RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780959|ref|YP_003065372.1| putative hydrolase serine
protease transmembrane protein [Candidatus Liberibacter asiaticus str.
psy62]
         (302 letters)



>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
           membrane fusion, trafficking, transmembrane, membrane
           protein; 3.20A {Pyrococcus horikoshii}
          Length = 188

 Score = 70.2 bits (171), Expect = 5e-13
 Identities = 31/166 (18%), Positives = 67/166 (40%), Gaps = 9/166 (5%)

Query: 61  VDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRL 120
            ++   +  +   L++        D     V+A++ +R++DP      V           
Sbjct: 3   FEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNY----IMAT 58

Query: 121 RTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQE 180
                 ++R V G    D+ LS++  K+ M++   +    +  GI +  V +   +L   
Sbjct: 59  SQISQTTLRSVIGQAHLDELLSERD-KLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAG 117

Query: 181 VSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEA 226
           + +    + +AER   A    A    E +++ +   R+A +I+SE 
Sbjct: 118 MQKAMARQAEAERERRARITLA----EAERQAAEKLREAAEIISEH 159


>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus
           horikoshii}
          Length = 113

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 69  KQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASI 128
            +   +++    V   D     VDA++ Y++IDP     +VS D + A  +L      ++
Sbjct: 7   LREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVS-DFLMAIVKL---AQTNL 62

Query: 129 RRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQE 180
           R + G    D+ LS  R+ +   + E+L    ++ G+ I  V + R D  ++
Sbjct: 63  RAIIGEMELDETLS-GRDIINARLREELDKITDRWGVKITRVEIQRIDPPKD 113


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 43.8 bits (102), Expect = 5e-05
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 16/78 (20%)

Query: 190 KAERLA-EAEFIRARGREEGQKRMSIADRKATQILSE-----ARRDSEINYGKGEAER-- 241
           +A+RL  E E IR + REE +KR+   D  A++++ +     A++D E  + + ++E+  
Sbjct: 76  QADRLTQEPESIR-KWREEQRKRLQELD-AASKVMEQEWREKAKKDLE-EWNQRQSEQVE 132

Query: 242 -----GRILSNVFQKDPE 254
                 RI    F + P+
Sbjct: 133 KNKINNRIADKAFYQQPD 150


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 32/224 (14%), Positives = 64/224 (28%), Gaps = 51/224 (22%)

Query: 95  MTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSKQRE---KMM-- 149
           +++  ++  L    V        S+L+ + +  +         DD  +   E   K +  
Sbjct: 11  LSHGSLEHVL---LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67

Query: 150 --MEVCEDLR-YDAEKLGISI----------EDVRVLRTDLTQEVSQQTYDRMKAERLAE 196
               V         + L + +           D+  L   L QE             +  
Sbjct: 68  VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN--------DTTLVKT 119

Query: 197 AEFIRA--RGREEGQKRMSIADRKATQILSEARRDSEIN-Y----GKGEAERGRILSNVF 249
            E I+     R   ++        A   L  A  +          G+G  +      + F
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSA---LFRAVGEGNAQLVAIFGGQGNTD------DYF 170

Query: 250 QKDPEFFEFYRSMRAYTDSL--ASSDTFLVLSPDSD-FFKYFDR 290
           +   E  + Y++       L   S++T   L   +    K F +
Sbjct: 171 E---ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211



 Score = 36.8 bits (85), Expect = 0.006
 Identities = 40/209 (19%), Positives = 80/209 (38%), Gaps = 58/209 (27%)

Query: 20  SFSSFFIVDARQQAIVTRF--G-KIHATY-R---EPGIY-------FKMPFSFM----NV 61
           S+ SFF   + ++AI   F  G + +  Y      P I          +P S M    N+
Sbjct: 288 SWESFF--VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNL 344

Query: 62  DRVKYLQKQIMRLN--L-DNIRVQVSDGKFYEVDAMMTYRIIDP--SL--FCQSVSCDRI 114
            + + +Q  + + N  L    +V++S      V+      +  P  SL     ++   + 
Sbjct: 345 TQ-EQVQDYVNKTNSHLPAGKQVEIS-----LVNGAKNLVVSGPPQSLYGLNLTL--RKA 396

Query: 115 AAESRL-RTRLDASIRRVYGLRRF------------DDALSKQREKMMMEVCEDLRYDAE 161
            A S L ++R+  S R++    RF              A     + +   V  ++ ++A+
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL---VKNNVSFNAK 453

Query: 162 KLGISI------EDVRVLRTDLTQEVSQQ 184
            + I +       D+RVL   +++ +   
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDC 482



 Score = 31.8 bits (72), Expect = 0.20
 Identities = 17/157 (10%), Positives = 44/157 (28%), Gaps = 36/157 (22%)

Query: 172 VLRTDLTQEVSQQT----YD---RMKAERLAEA-EFIRARGREEGQKRMSIADRKATQIL 223
            L+    + + + T     D      AE + +   ++ +        +         Q+L
Sbjct: 32  QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF-------DQVL 84

Query: 224 SEARRDSEINYGKGEAERGRILSNVFQKDPEFFEFYRSMRAYTDSLASSDTFLVLSPDSD 283
           +    + E  Y +G          + + D    +    ++ Y  +   +        +S 
Sbjct: 85  NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144

Query: 284 FFK---------------------YFDRFQERQKNYR 299
            F+                     YF+  ++  + Y 
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH 181



 Score = 31.5 bits (71), Expect = 0.22
 Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 17/67 (25%)

Query: 243 RILSNVFQ-KDPEFFEFYRSMRAYTDSLASSDTF-----LVLSPDSDFFKYF--DRFQER 294
                  Q ++    +F + +   T+  A+ D       LV       F  +     +  
Sbjct: 25  ASFFIASQLQE----QFNKILPEPTEGFAADDEPTTPAELVGK-----FLGYVSSLVEPS 75

Query: 295 QKNYRKE 301
           +     +
Sbjct: 76  KVGQFDQ 82



 Score = 29.5 bits (66), Expect = 0.94
 Identities = 51/352 (14%), Positives = 93/352 (26%), Gaps = 161/352 (45%)

Query: 22  SSFFIVDARQQA-IVTRFG-------------KIHATYREPGIYFKMPFSFMNVDR-VKY 66
           S+ F       A +V  FG              ++ TY               V   +K+
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH--------VL----VGDLIKF 190

Query: 67  LQKQIMRLNLDNIRVQVSDGKFY----EVDAMMTYRIIDP----------SL-------F 105
             + +  L    +  +    K +     +   +      P          S         
Sbjct: 191 SAETLSELIRTTLDAE----KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL 246

Query: 106 CQ-SVSCDRIAAES--RLRTRLDASIRRVYGL------------RRFDDALSKQREKMMM 150
               V+  ++   +   LR+ L  +     GL              F  ++     +  +
Sbjct: 247 AHYVVTA-KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV-----RKAI 300

Query: 151 EVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQK 210
            V   L +    +G     VR            + Y       L  +  I     E  + 
Sbjct: 301 TV---LFF----IG-----VR----------CYEAYPNTS---LPPS--ILEDSLENNEG 333

Query: 211 R---M-SIAD--RKATQ--I------LSEARRD--SEIN--------------YG----- 235
               M SI++  ++  Q  +      L   ++   S +N              YG     
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393

Query: 236 -KGEAERG----RILSNVF-QKDPEFFEFYRSMRAYTDSLASSDTFLVLS-P 280
            K +A  G    RI    F ++  +F     S R           FL ++ P
Sbjct: 394 RKAKAPSGLDQSRIP---FSERKLKF-----SNR-----------FLPVASP 426


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 35.4 bits (80), Expect = 0.018
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 13/39 (33%)

Query: 117 ESR-LRTRLDASIRRVYGLRRFDD---ALSKQREKMMME 151
           E + L+ +L AS+ ++Y     DD   AL+    K  ME
Sbjct: 18  EKQALK-KLQASL-KLYA----DDSAPALAI---KATME 47


>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI,
           lipoyl, structural genomics; 1.75A {Mycobacterium
           tuberculosis} PDB: 3ift_A
          Length = 155

 Score = 34.2 bits (78), Expect = 0.039
 Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 11/106 (10%)

Query: 143 KQREKMMMEVCEDLRYDAEKLGISIEDVRVLR---TDLTQEVSQQTYD----RMKAERLA 195
            Q    M ++  DL Y AE   I       +R   TD  Q             +     A
Sbjct: 16  TQGPGSMSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTA 75

Query: 196 EAEFIRARGREEGQKRMSIADRKATQILSEARRDSE-IN---YGKG 237
              F      +      +    K +++ S+     + +N   YG G
Sbjct: 76  GETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAG 121


>2ppv_A Uncharacterized protein; NP_764104.1, structural genomics, joint
           center for structural genomics, JCSG; 2.00A
           {Staphylococcus epidermidis atcc 12228}
          Length = 332

 Score = 31.9 bits (72), Expect = 0.18
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 18/119 (15%)

Query: 90  EVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFD----------- 138
            +   +             ++         ++  +DA + R  G    D           
Sbjct: 200 GISEALLRTSAPKLYVSNVMTQPGETDNYDVKEHIDA-LTRQVGEPFIDFVICSSESYSK 258

Query: 139 DALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEA 197
           D L +  EK    V    +   +  GI     RVL      E+S + Y R   + L++ 
Sbjct: 259 DVLQRYEEKNSKPVAVH-KEQLKDSGI-----RVLTASNLVEISNEHYVRHNTKVLSKM 311


>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
           barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
           SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
          Length = 907

 Score = 29.9 bits (67), Expect = 0.71
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 160 AEKLGISIEDVRVLRTDLTQEV--------SQQTYDRMKAERLAEAEFIRARGREEGQKR 211
              LGI+ E++ ++  D T +         S+       A R+A  E +    R+ G   
Sbjct: 671 LRPLGITPENIHLVMND-TSKTPNSGPAGGSRSQVVTGNAIRVA-CEMLIEGMRKPGGGF 728

Query: 212 MSIADRKA 219
            + A+ KA
Sbjct: 729 FTPAEMKA 736


>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction
            intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A
            {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1
            d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A*
            2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C*
            3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A*
            3eub_A* 3etr_A*
          Length = 1332

 Score = 29.3 bits (65), Expect = 1.0
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 160  AEKLGISIEDVRVLRTDLTQEV--------SQQTYDRMKAERLAEAEFIRARGREEGQKR 211
            ++ L I I  + +  T  T  V        S  T    +A   A  + I  R     +K 
Sbjct: 1051 SKALKIPISKIYISETS-TNTVPNSSPTAASVSTDIYGQAVYEA-CQTILKRLEPFKKKN 1108

Query: 212  MSIA 215
               +
Sbjct: 1109 PDGS 1112


>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
           genomics, protein structure initiative, NYSGXRC, PSI;
           2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2
           d.41.2.2
          Length = 449

 Score = 28.4 bits (63), Expect = 1.9
 Identities = 18/109 (16%), Positives = 29/109 (26%), Gaps = 8/109 (7%)

Query: 173 LRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQI--LSEAR-RD 229
           + TD  + +  Q   ++  E  A    I  R +               Q+      R   
Sbjct: 32  IDTDFYKLLMLQMIWKLYPEVDATFSLIN-RTKTVRLAEEIDEMELREQLDHARTLRLSK 90

Query: 230 SEINYGKGEAERGRILSNVFQKDPEFFEFYRSMRAYTDSLASSDTFLVL 278
            E  +  G              +PEF  +  S +     L   D    L
Sbjct: 91  KENIWLAGN----TFYGRSQIFEPEFLSWLSSYQLPEYELFKRDGQYEL 135


>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein
           structure initiative, PSI; 1.85A {Archaeoglobus
           fulgidus} SCOP: a.60.4.3 c.52.1.30
          Length = 199

 Score = 28.0 bits (62), Expect = 3.1
 Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 19/135 (14%)

Query: 112 DRIAAESRLRTRLDAS--IRRVYGLRRFDDALSKQREKMMM----EVCEDLRYDAEKLGI 165
           +R   E +       +     +Y   RF D       +  +    +  E+ +  A  +GI
Sbjct: 59  ERYMIECKFHNIPVYTGLKEAMYTYARFLDVEKHGFTQPWIFTNTKFSEEAKKYAGCVGI 118

Query: 166 SIEDVRVLRTDLTQ---------EVSQQTYDRMKAERLAEAEFIRAR----GREEGQKRM 212
            +        +  +          ++    D+   + L  A  +  R      EE  + +
Sbjct: 119 KLTGWSYPEKEGIEVLLESKGLYPITILRIDKEVLDELVRAGLVFCRDVVSAGEEKLREI 178

Query: 213 SIADRKATQILSEAR 227
            ++ +KA ++++EA+
Sbjct: 179 GLSAKKAREVIAEAK 193


>2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural genomics,
           PSI, protein structure initiative, midwest center for
           structural genomics; HET: NAD 1PE; 2.15A {Escherichia
           coli K12}
          Length = 385

 Score = 27.4 bits (60), Expect = 4.0
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 9/91 (9%)

Query: 95  MTYRIIDPSLFCQSVSCDRIAA-ESRLRTRLDASIRRVY--GLRRFDDALSKQREK---- 147
           MT  II+P LF       +  A    ++       + +   G         ++R+K    
Sbjct: 294 MTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEV--NTRRERQKQGIP 351

Query: 148 MMMEVCEDLRYDAEKLGISIEDVRVLRTDLT 178
           +     + +   A ++G+  E ++     L 
Sbjct: 352 LDAGSWQAICDAARQIGMPEETLQAFCQQLA 382


>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; 1.85A {Pyrococcus horikoshii OT3}
           SCOP: d.81.4.1 PDB: 2dma_A
          Length = 198

 Score = 27.3 bits (60), Expect = 4.6
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 183 QQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERG 242
           +     +  E   + E+I    R++ +K    A R A        R ++    + E E+ 
Sbjct: 5   ELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKT---QAELEKQ 61

Query: 243 RILSNVFQKD 252
           RI++N   + 
Sbjct: 62  RIIANARLEV 71


>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
           HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
           PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
          Length = 219

 Score = 26.5 bits (57), Expect = 8.7
 Identities = 7/27 (25%), Positives = 13/27 (48%)

Query: 181 VSQQTYDRMKAERLAEAEFIRARGREE 207
           VS      +  E + + EF+  +G +E
Sbjct: 179 VSAMVAQYVPDEEIIKREFLELKGIDE 205


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.326    0.138    0.388 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,603,422
Number of extensions: 123433
Number of successful extensions: 560
Number of sequences better than 10.0: 1
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 35
Length of query: 302
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 210
Effective length of database: 3,462,782
Effective search space: 727184220
Effective search space used: 727184220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.0 bits)