HHsearch alignment for GI: 254780960 and conserved domain: COG4030
>COG4030 Uncharacterized protein conserved in archaea [Function unknown].
Probab=98.95 E-value=1.8e-08 Score=70.65 Aligned_cols=150 Identities=18% Similarity=0.265 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCC--HHHHHCCCCHHHCCC--------
Q ss_conf 0045689887421134543389999998419869998167234223226550864--134310100000000--------
Q gi|254780960|r 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFD--QYYANRFIEKDDRLT-------- 207 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~--~~~a~~~~~~~~~~~-------- 207 (297)
T Consensus 69 Vt~~dlrr~sE~sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~PeeeR~E~L 147 (315)
T COG4030 69 VTNRDLRRISELSAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPRGELHGTEVDLDSIAVPEEEREELL 147 (315)
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHCC-CCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 768889999886310489859999987421-7866874229999999987629775543343114744568707799998
Q ss_pred ----------C------------CCC----C------CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHC-
Q ss_conf ----------0------------015----6------310521138877532331037766799997892348899848-
Q gi|254780960|r 208 ----------G------------QVM----E------PIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVA- 254 (297)
Q Consensus 208 ----------~------------~~~----~------~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~A- 254 (297)
T Consensus 148 ~~~~~~~~~~geelfe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d~s-a~~VGDSItDv~ml~~~r 226 (315)
T COG4030 148 SIIDVIASLSGEELFEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGIDFS-AVVVGDSITDVKMLEAAR 226 (315)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC-EEEECCCCCCHHHHHHHH
T ss_conf 8507511144778898899998602788898998764102675023899988761289965-267337531058999861
Q ss_pred ---CCEEEECCCHHHHHHCCEEEECCCHHHHHHHCCCC
Q ss_conf ---93189879578998589899569832767870988
Q gi|254780960|r 255 ---GYGVAFHAKPALAKQAKIRIDHSDLEALLYIQGYK 289 (297)
Q Consensus 255 ---gvGVA~~a~~~v~~~Ad~~~~~~dl~~~l~~~g~~ 289 (297)
T Consensus 227 grGglAvaFNGNeYal~eAdVAvisp~~~a~~pvielf 264 (315)
T COG4030 227 GRGGLAVAFNGNEYALKEADVAVISPTAMAEAPVIELF 264 (315)
T ss_pred CCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 46865899558701235454478655045440799999