HHsearch alignment for GI: 254780960 and conserved domain: TIGR01116
>TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782 This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=99.97 E-value=8.6e-31 Score=207.21 Aligned_cols=154 Identities=15% Similarity=0.193 Sum_probs=124.0
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCC
Q ss_conf 55687-64200456898874211345433899999984198699981672342232265508641343101000000000
Q gi|254780960|r 130 ERISL-FKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTG 208 (297)
Q Consensus 130 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~ 208 (297)
T Consensus 443 RCLA~A~~~Es~Ltf~G~vGl~DPPR~EV~~ai~~CR~AGIrVImITGD~KeTA~AicR~IG~lsSfTG-~EF~~----m 517 (800)
T TIGR01116 443 RCLALAFKEESKLTFIGVVGLLDPPRPEVADAIEKCREAGIRVIMITGDNKETAEAICRRIGILSSFTG-REFDE----M 517 (800)
T ss_pred HHHHHEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCC-CHHHH----C
T ss_conf 411001214678678888506894816899999988737978999847982468999767501024200-03650----0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEECC-CHHHHHHCCEEEECCCHHHHHHHCC
Q ss_conf 015631052113887753233103776679999789234889984893189879-5789985898995698327678709
Q gi|254780960|r 209 QVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHA-KPALAKQAKIRIDHSDLEALLYIQG 287 (297)
Q Consensus 209 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~a-~~~v~~~Ad~~~~~~dl~~~l~~~g 287 (297)
T Consensus 518 ~~~~~~~FSR~ePsHK~~lV~-~~~~~~i~AMTGDGVNDAPALK~AdIGIAMGSGTeVAK~ASdmVLADDNFaTIV~AV~ 596 (800)
T TIGR01116 518 GPKKALVFSRVEPSHKLRLVE-LQEQGQIVAMTGDGVNDAPALKKADIGIAMGSGTEVAKEASDMVLADDNFATIVKAVE 596 (800)
T ss_pred CCCCCEEEEECCCHHHHHHHH-HCCCCEEEEECCCCCCCCHHHCCCCCEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHC
T ss_conf 601466876058255787653-1156707873286977724334443023458616899998531002477254653310
Q ss_pred CC
Q ss_conf 88
Q gi|254780960|r 288 YK 289 (297)
Q Consensus 288 ~~ 289 (297)
T Consensus 597 EG 598 (800)
T TIGR01116 597 EG 598 (800)
T ss_pred CC
T ss_conf 46