HHsearch alignment for GI: 254780960 and conserved domain: TIGR01494

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC; InterPro: IPR001757 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the several classes of P-type ATPases, including those that transport K^+ (3.6.3.12 from EC), Mg^2+ (3.6.3.2 from EC), Cd^2+ (3.6.3.3 from EC), Cu ^2+ (3.6.3.4 from EC), Zn^2+ (3.6.3.5 from EC), Na^+ (3.6.3.7 from EC), Ca^2+ (3.6.3.8 from EC), Na^+/K^+ (3.6.3.9 from EC), and H^+/K^+ (3.6.3.10 from EC). These P-ATPases are found in both prokaryotes and eukaryotes. More information about this protein can be found at Protein of the Month: ATP Synthases . ; GO: 0005524 ATP binding, 0015662 ATPase activity coupled to transmembrane movement of ions phosphorylative mechanism, 0006810 transport, 0016020 membrane.
Probab=99.95  E-value=1.1e-28  Score=194.36  Aligned_cols=228  Identities=16%  Similarity=0.156  Sum_probs=165.0

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEE
Q ss_conf             99845888768999999999860788835731880499982688894899999998402168634621455553444872
Q gi|254780960|r    6 TLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSIIADKPIDLIIHRHENRRKNLLIA   85 (297)
Q Consensus         6 TLi~~~~~~~l~~~~~~~i~~~~~~~~~~~La~~~A~e~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~l~~~   85 (297)
T Consensus       212 ~~i~sDKTGTLT~n~m~~~-~~~----------------~~~~~~~~~P~e~Alv~~a~~-~~~~~~F~s~~krm~~i~~  273 (478)
T TIGR01494       212 DYICSDKTGTLTENKMTFK-KVY----------------IGGEYQAGSPDEKALVKFAKK-ILDVLPFTSERKRMSVIVR  273 (478)
T ss_pred             CEEEECCCCCCCCCCEEEE-EEE----------------ECCCCCCCCHHHHHHHHHHHH-HCCEECCCCCEEEEEEEEE
T ss_conf             2799857753307862799-987----------------246232477457999986544-3112203554047899998


Q ss_pred             CCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             27502652452002788741223277888765202441001234556876420045689887421134543389999998
Q gi|254780960|r   86 DMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMK  165 (297)
Q Consensus        86 d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  165 (297)
T Consensus       274 ~~~~~~~KGa~~~~~~~~~~~~~~~~~~~~~G--------------~R~l~~a~~~~~lG~~~~~D~lr~~~~~~i~~L~  339 (478)
T TIGR01494       274 DPDGKYVKGAPEVILERCSDTEEHLEELASEG--------------LRTLAVAYKEELLGLTAIEDPLREDVKETIEELK  339 (478)
T ss_pred             CCCCEEECCCHHHHHHHHHHHHHHHHHHHHCC--------------CEEEEEEEECEEEEEEEEECCCCCCHHHHHHHHH
T ss_conf             58965871834678998888999988763178--------------7089999806078999973457772689999998


Q ss_pred             HCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             41986999816723422322655086413431010000000000156310521138877532331037766799997892
Q gi|254780960|r  166 QNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGN  245 (297)
Q Consensus       166 ~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~  245 (297)
T Consensus       340 ~agi~v~mlTGD~~~tA~~ia~~~g~------------------------~aR~~P~qK~~~V~~~~~~g~~V~m~GDG~  395 (478)
T TIGR01494       340 RAGIKVWMLTGDNVETAIAIAKECGL------------------------FARVSPEQKAEIVELLQKRGAIVAMIGDGA  395 (478)
T ss_pred             HCCCEEEEEECCCHHHHHHHHHHCCC------------------------EECCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             65998999957987999999985242------------------------012884899999999986699899980883


Q ss_pred             CHHHHHHHCCCEEEECCCHHHHHHCCEEEECCCHHHHHHHCCCCHHHH
Q ss_conf             348899848931898795789985898995698327678709888883
Q gi|254780960|r  246 NDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEALLYIQGYKKDEI  293 (297)
Q Consensus       246 ND~pmL~~AgvGVA~~a~~~v~~~Ad~~~~~~dl~~~l~~~g~~~~~~  293 (297)
T Consensus       396 ND~~AL~~AdVGia~~A----~~a~D~~l~~~~~~~~~~~~~~GR~~~  439 (478)
T TIGR01494       396 NDAPALKAADVGIAIGA----KAAADIVLTDDNLSLIVLLLVHGRWTY  439 (478)
T ss_pred             CCHHHHHHCCCCEEHHH----HHHCCHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             32788962165333137----876013441688037999999999988