HHsearch alignment for GI: 254780960 and conserved domain: TIGR01512
>TIGR01512 ATPase-IB2_Cd cadmium-translocating P-type ATPase; InterPro: IPR006404 These sequences describe the P-type ATPase primarily responsible for translocating cadmium ions (and other closely-related divalent heavy metals such as cobalt, mercury, lead and zinc) across biological membranes. These transporters are found in prokaryotes and plants. Experimentally characterised members include P37617 from SWISSPROT from Escherichia coli, Q10866 from SWISSPROT from Mycobacterium tuberculosis and Q59998 from SWISSPROT from Synechocystis PCC6803. The cadmium P-type ATPases have been characterised as Type IB based on a phylogenetic analysis which combines the copper-translocating ATPases with the cadmium-translocating species . This family and that describing the copper-ATPases (IPR006403 from INTERPRO) are well separated, and thus the copper-ATPases can be typed as IB1 and the cadmium-ATPases as IB2. ; GO: 0005524 ATP binding, 0016818 hydrolase activity acting on acid anhydrides in phosphorus-containing anhydrides, 0046872 metal ion binding, 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0016020 membrane.
Probab=99.93 E-value=5.2e-27 Score=184.07 Aligned_cols=188 Identities=21% Similarity=0.206 Sum_probs=129.4
Q ss_pred CCCCEEEECCCEEEEECCCC-------HHHHHHHHCCCHHHHHHHHHHH-----CCCCCHHHHH-HHHH------HHHHH
Q ss_conf 53444872275026524520-------0278874122327788876520-----2441001234-5568------76420
Q gi|254780960|r 78 RRKNLLIADMDSTMIEQECI-------DELADLIGIKEKVSLITARAMN-----GEIPFQDSLR-ERIS------LFKGT 138 (297)
Q Consensus 78 ~~~~l~~~d~d~tli~~~~l-------~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~------~~~~~ 138 (297)
T Consensus 232 ~~~~tv~fDKTGTLT~G~~~v~~~~~~~~l~laaa~E~~S~HPlA~AIv~~~e~pG~G~~a~~~g~~v~~G~~~t~~~v~ 311 (494)
T TIGR01512 232 AKVKTVAFDKTGTLTTGKPKVVDVEPLELLRLAAAAEQQSSHPLARAIVAAEEVPGEGVKAVVDGEEVRIGNKRTLVLVA 311 (494)
T ss_pred HCCCEEEECCCCCEECCEEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCEEEEE
T ss_conf 08547998077400123069874405679999999731066868999997420477744899957799997376589999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCH
Q ss_conf 045689887421134543389999998419-8699981672342232265508641343101000000000015631052
Q gi|254780960|r 139 STKIIDSLLEKKITYNPGGYELVHTMKQNG-ASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDG 217 (297)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g-~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (297)
T Consensus 312 ~~~~~~G~i~l~D~~R~~a~~ai~~L~~~G~~~~~mLTGD~~~~A~~vA~~lG-d~v~A--------------------- 369 (494)
T TIGR01512 312 VDGKLIGVILLSDELRPEAAEAIAELKALGVKKIVMLTGDRRAVAEAVAAELG-DEVHA--------------------- 369 (494)
T ss_pred ECCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHCC-CEEEE---------------------
T ss_conf 85849999997335662279999999861630001014884899999998739-10252---------------------
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEEC--CCHHHHHHCCEEEECCCHHHHHHHCCCCHH
Q ss_conf 11388775323310377667999978923488998489318987--957899858989956983276787098888
Q gi|254780960|r 218 TAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH--AKPALAKQAKIRIDHSDLEALLYIQGYKKD 291 (297)
Q Consensus 218 ~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~--a~~~v~~~Ad~~~~~~dl~~~l~~~g~~~~ 291 (297)
T Consensus 370 eL~PEDK~~~v~~l~----~~~mVGDGiNDAPALA~AdvGiAMG~~Gsd~A~e~AD~vl~~d~l~~l~~~~~lar~ 441 (494)
T TIGR01512 370 ELLPEDKLEIVKELQ----KVAMVGDGINDAPALAAADVGIAMGASGSDVALETADIVLLDDDLSRLPEAIRLARR 441 (494)
T ss_pred CCCHHHHHHHHHHHH----HHEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCEEEECCCHHHHHHHHHHHHH
T ss_conf 288078999998750----105644870048998320031002676889999851333454782127999999999