HHsearch alignment for GI: 254780960 and conserved domain: TIGR01517
>TIGR01517 ATPase-IIB_Ca calcium-translocating P-type ATPase, PMCA-type; InterPro: IPR006408 This family describes the P-type ATPase responsible for translocating calcium ions across the plasma membrane of eukaryotes , out of the cell. In some organisms, this type of pump may also be found in vacuolar membranes . In humans and mice, at least, there are multiple isoforms of the PMCA pump with overlapping but not redundant functions. Accordingly, there are no human diseases linked to PMCA defects, although alterations of PMCA function do elicit physiological effects . The calcium P-type ATPases have been characterised as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump .; GO: 0005388 calcium-transporting ATPase activity, 0005509 calcium ion binding, 0005524 ATP binding, 0015085 calcium ion transmembrane transporter activity, 0006816 calcium ion transport, 0016020 membrane.
Probab=99.96 E-value=6.2e-29 Score=195.85 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCH
Q ss_conf 00456898874211345433899999984198699981672342232265508641343101000000000015631052
Q gi|254780960|r 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDG 217 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (297)
T Consensus 532 n~gl~~~~~vGI~DP~RpgV~eav~~cqrAGiTVRMVTGDNi~TA~AIAr~CgIL~~g~~~~EG~~FR~~~ILPkl~VlA 611 (885)
T TIGR01517 532 NKGLTLIAVVGIKDPVRPGVREAVQECQRAGITVRMVTGDNISTAKAIARNCGILTEGGLAMEGKEFRKDKILPKLRVLA 611 (885)
T ss_pred CCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCEEEE
T ss_conf 97369999970688989885216887301863899872881579999986325688983005773116666676337863
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEEC--CCHHHHHHCCEEEECCCHHHHHHH
Q ss_conf 11388775323310377667999978923488998489318987--957899858989956983276787
Q gi|254780960|r 218 TAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH--AKPALAKQAKIRIDHSDLEALLYI 285 (297)
Q Consensus 218 ~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~--a~~~v~~~Ad~~~~~~dl~~~l~~ 285 (297)
T Consensus 612 RS~P~DK~lLV~-L~~~GeVVAVTGDGTNDaPALk~AdVGF~MGI~GTeVA~~aSDiiL~DDNF~sIV~A 680 (885)
T TIGR01517 612 RSSPLDKQLLVE-LKDMGEVVAVTGDGTNDAPALKLADVGFAMGIAGTEVAKEASDIILLDDNFASIVRA 680 (885)
T ss_pred CCCCHHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHCCCEEEECCHHHHHHHHHCCEEEECCCCHHHHEE
T ss_conf 388633378784-336831899846899864665115720560760578997609878874880352000