HHsearch alignment for GI: 254780960 and conserved domain: TIGR01544
>TIGR01544 HAD-SF-IE HAD-superfamily (subfamily IE) hydrolase, TIGR01544; InterPro: IPR006434 This family is a small group of metazoan sequences with one sequence from Arabidopsis thaliana. The sequences from mouse are annotated as pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the human homolog. However, no such annotation can currently be found for this gene. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB..
Probab=97.12 E-value=0.001 Score=41.59 Aligned_cols=177 Identities=16% Similarity=0.223 Sum_probs=108.7
Q ss_pred CCCCCCEEEECCCEEEEECC------------------------CCHHHHHHHHCCCHHHHHHHHHHHCCCCCHH-HHHH
Q ss_conf 55534448722750265245------------------------2002788741223277888765202441001-2345
Q gi|254780960|r 76 ENRRKNLLIADMDSTMIEQE------------------------CIDELADLIGIKEKVSLITARAMNGEIPFQD-SLRE 130 (297)
Q Consensus 76 ~~~~~~l~~~d~d~tli~~~------------------------~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 130 (297)
T Consensus 24 GGa~k~~iisDFDyTlsrf~~e~G~r~pt~hgifd~nc~~l~~e~~~k~~~Lk~KYypIE~dP~lt~eEK~pyM~eWwtk 103 (287)
T TIGR01544 24 GGAEKLQIISDFDYTLSRFATEDGERVPTSHGIFDDNCKRLKEELKKKLVKLKEKYYPIEVDPVLTVEEKVPYMVEWWTK 103 (287)
T ss_pred CCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCHHHCCCHHHHEECC
T ss_conf 68765689852364122323115860552001022210017467788898886245544506888654224200010035
Q ss_pred HHHHHHH--HHH-HHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHC-CC----HHHHHCCCCH
Q ss_conf 5687642--004-56898874211345433899999984198699981672342232265508-64----1343101000
Q gi|254780960|r 131 RISLFKG--TST-KIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLG-FD----QYYANRFIEK 202 (297)
Q Consensus 131 ~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lg-i~----~~~a~~~~~~ 202 (297)
T Consensus 104 Sh~L~v~~~f~k~~i~~iv~~s~~~lkdg~e~Ff~~Lq~h~IP~~iFSAGiGn~~e~vlrQa~Gv~hpNvkvvSNf~~FD 183 (287)
T TIGR01544 104 SHELLVNEKFDKAKIEEIVAKSDVVLKDGAEDFFEKLQRHSIPVLIFSAGIGNVVEEVLRQALGVLHPNVKVVSNFLDFD 183 (287)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCCCC
T ss_conf 55200067687546999998756766247167999987458989999357217999999863588899743886321047
Q ss_pred HHCCCCCCCCCCCCHHHHH-HHHHHHHHHHC--CCCCEEEEEECCCCHHHHHH
Q ss_conf 0000000156310521138-87753233103--77667999978923488998
Q gi|254780960|r 203 DDRLTGQVMEPIIDGTAKS-QILLEAIQKLQ--INPEDTIAVGDGNNDLDMLR 252 (297)
Q Consensus 203 ~~~~~~~~~~~~~~~~~k~-~~~~~l~~~~~--~~~~~v~avGDg~ND~pmL~ 252 (297)
T Consensus 184 edg~l~gF~~plIHtFnKn~~v~~~~teyf~~~~~r~niIllGDS~GD~~Ma~ 236 (287)
T TIGR01544 184 EDGVLKGFKEPLIHTFNKNEDVLQKETEYFDDVKDRSNIILLGDSIGDLDMAS 236 (287)
T ss_pred CCCCHHHCCCCCEEEECCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCHHC
T ss_conf 32202221787147760775101114303554315740899708714440214