HHsearch alignment for GI: 254780960 and conserved domain: TIGR01548
>TIGR01548 HAD-SF-IA-hyp1 HAD superfamily (subfamily IA) hydrolase, TIGR01548; InterPro: IPR006438 This entry represents a small and phylogenetically curious clade of sequences. Sequences are found from Halobacterium (an archaeon), Nostoc and Synechococcus (cyanobacteria) and Phytophthora (a stramenophile eukaryote). These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs. The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicating membership in subfamily IA..
Probab=96.08 E-value=0.017 Score=33.99 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCH
Q ss_conf 0456898874211345433899999984-198699981672342232265508641343101000000000015631052
Q gi|254780960|r 139 STKIIDSLLEKKITYNPGGYELVHTMKQ-NGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDG 217 (297)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~-~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (297)
T Consensus 140 P~~a~~G~i~--dE~lL~~~~~l~~L~Rra~~~~~v~tGrp~~~a~~~L~~~Gl~i~~~v~i~m~D----------~p~G 207 (245)
T TIGR01548 140 PDLAADGYIE--DEDLLLAKDLLDELSRRADKAVAVLTGRPSKEADVVLERRGLDILGEVRIAMDD----------APDG 207 (245)
T ss_pred CCCCCCCCCC--CCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECC----------CCCC
T ss_conf 8634477400--222348654445643106875589728983789998763388877642677415----------7875
Q ss_pred HHHHHHHHHHHHHHCCCCC-EEEEEECCCCHHHHHHHC
Q ss_conf 1138877532331037766-799997892348899848
Q gi|254780960|r 218 TAKSQILLEAIQKLQINPE-DTIAVGDGNNDLDMLRVA 254 (297)
Q Consensus 218 ~~k~~~~~~l~~~~~~~~~-~v~avGDg~ND~pmL~~A 254 (297)
T Consensus 208 KPnP~~li~aa~~lg~~~~l~a~~vGDTvdDi~t~r~A 245 (245)
T TIGR01548 208 KPNPEALILAAKRLGVDAHLSAVYVGDTVDDILTARKA 245 (245)
T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCC
T ss_conf 66747999999982746454257853878999974139