HHsearch alignment for GI: 254780960 and conserved domain: TIGR01548

>TIGR01548 HAD-SF-IA-hyp1 HAD superfamily (subfamily IA) hydrolase, TIGR01548; InterPro: IPR006438 This entry represents a small and phylogenetically curious clade of sequences. Sequences are found from Halobacterium (an archaeon), Nostoc and Synechococcus (cyanobacteria) and Phytophthora (a stramenophile eukaryote). These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs. The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicating membership in subfamily IA..
Probab=96.08  E-value=0.017  Score=33.99  Aligned_cols=104  Identities=21%  Similarity=0.246  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCH
Q ss_conf             0456898874211345433899999984-198699981672342232265508641343101000000000015631052
Q gi|254780960|r  139 STKIIDSLLEKKITYNPGGYELVHTMKQ-NGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDG  217 (297)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~-~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~  217 (297)
T Consensus       140 P~~a~~G~i~--dE~lL~~~~~l~~L~Rra~~~~~v~tGrp~~~a~~~L~~~Gl~i~~~v~i~m~D----------~p~G  207 (245)
T TIGR01548       140 PDLAADGYIE--DEDLLLAKDLLDELSRRADKAVAVLTGRPSKEADVVLERRGLDILGEVRIAMDD----------APDG  207 (245)
T ss_pred             CCCCCCCCCC--CCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECC----------CCCC
T ss_conf             8634477400--222348654445643106875589728983789998763388877642677415----------7875


Q ss_pred             HHHHHHHHHHHHHHCCCCC-EEEEEECCCCHHHHHHHC
Q ss_conf             1138877532331037766-799997892348899848
Q gi|254780960|r  218 TAKSQILLEAIQKLQINPE-DTIAVGDGNNDLDMLRVA  254 (297)
Q Consensus       218 ~~k~~~~~~l~~~~~~~~~-~v~avGDg~ND~pmL~~A  254 (297)
T Consensus       208 KPnP~~li~aa~~lg~~~~l~a~~vGDTvdDi~t~r~A  245 (245)
T TIGR01548       208 KPNPEALILAAKRLGVDAHLSAVYVGDTVDDILTARKA  245 (245)
T ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCC
T ss_conf             66747999999982746454257853878999974139