HHsearch alignment for GI: 254780960 and conserved domain: TIGR02009
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase; InterPro: IPR010976 Phosphoglucomutases interconvert D-glucose 1-phosphate and D-glucose 6-phosphate, a reaction which is important for energy metabolism in many organisms and for cell wall biosynthesis in bacteria , . Beta-phosphoglucomutases are monomeric enzymes which interconvert the beta anomers of these compounds using Mg2+ as a cofactor. This entry groups together three clades: the characterised beta-phosphoglucomutases (bPGMs) (including those from Escherichia coli, Bacillus subtilus and Lactococcus lactis, a clade of putative bPGMs from mycobacteria and a clade including the uncharacterised Escherichia coli and Haemophilus influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the 'variant 3' Glu-Asp version of the third conserved HAD domain. The Lactococcus enzyme has been crystallised and studied in detail . It is composed of two distinct regions, an alpha/beta core domain similar to that found in other HAD family members, and a helical cap domain. The core domain contains a central six-stranded parallel beta sheet surrounded by six alpha helices, while the cap domain consists of an antiparallel four alpha-helix bundle. Overall, the monomer forms a "kidney-bean" shape similar to that observed in other HAD family members such as phosphoserine phosphatase. The active site of the enzyme is located at the interface of the two domains..
Probab=97.99 E-value=0.00012 Score=47.17 Aligned_cols=171 Identities=21% Similarity=0.275 Sum_probs=109.3
Q ss_pred CEEEECCCEEEEECCCCH-----HHHHHHHCC-------CHHHHHHHHHHHCC-------------------CCC-HHHH
Q ss_conf 448722750265245200-----278874122-------32778887652024-------------------410-0123
Q gi|254780960|r 81 NLLIADMDSTMIEQECID-----ELADLIGIK-------EKVSLITARAMNGE-------------------IPF-QDSL 128 (297)
Q Consensus 81 ~l~~~d~d~tli~~~~l~-----~~a~~~~~~-------~~~~~~~~~~~~~~-------------------~~~-~~~~ 128 (297)
T Consensus 2 ~a~IFDmDGVi~DT~~~H~~AW~~~~~~~g~~r~~~~~~Fdp~~~~~~~l~G~~r~~~~~~il~~~~~~IP~~~~ed~~~ 81 (211)
T TIGR02009 2 KAVIFDMDGVIVDTAPLHAQAWKALADKYGIERAEKFVLFDPEEQYNESLKGLSREDILRAILKLRAVDIPDGSKEDGLS 81 (211)
T ss_pred CEEEECCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 64665177500021689999999999983558876666589899999983899768999999874277699988896889
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HH-CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHC
Q ss_conf 45568764200456898874--21-1345433899999984198699981672342232265508641343101000000
Q gi|254780960|r 129 RERISLFKGTSTKIIDSLLE--KK-ITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDR 205 (297)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~ 205 (297)
T Consensus 82 ~~~~~~l~~~K~~~y~~ll~qE~~~~~~lp~~~~~l~~l~~~~i~~a~gS~SGP~Na~~~L~~~~L~~~F~~~Vda~~v- 160 (211)
T TIGR02009 82 LEKIEQLAERKNELYRELLRQELTGAEVLPGIENLLKELKKKGIAVALGSSSGPKNADRILAKLGLTDYFDAVVDASEV- 160 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCEEECHHHH-
T ss_conf 8899999999999999998622672100365589999998669857884054502479999986126580143276899-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCE
Q ss_conf 0000156310521138877532331037766799997892348899848931
Q gi|254780960|r 206 LTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG 257 (297)
Q Consensus 206 ~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG 257 (297)
T Consensus 161 -----k~~~~AgKP~Pe~FL~AA~~Lgv~P~~C~vfEDA~~G~~Aa~aaGm~ 207 (211)
T TIGR02009 161 -----KEEGLAGKPHPETFLLAAELLGVSPEECVVFEDADAGVQAARAAGMF 207 (211)
T ss_pred -----HHHCCCCCCCHHHHHHHHHHCCCCHHHEEEEECHHHHHHHHHHCCCC
T ss_conf -----76147998871058999987478975803322257899999836981