Query gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 297
No_of_seqs 155 out of 2771
Neff 9.2
Searched_HMMs 39220
Date Mon May 30 02:26:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780960.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11133 serB phosphoserine ph 100.0 0 0 337.7 20.4 270 15-289 46-318 (322)
2 TIGR00338 serB phosphoserine p 100.0 0 0 339.8 12.9 211 76-286 10-223 (223)
3 COG0560 SerB Phosphoserine pho 100.0 3.6E-37 9.1E-42 246.3 13.7 210 78-287 3-212 (212)
4 PRK13582 thrH phosphoserine ph 100.0 2.8E-35 7E-40 234.7 13.5 192 80-286 1-195 (205)
5 KOG1615 consensus 100.0 5E-34 1.3E-38 227.0 7.7 211 77-292 13-227 (227)
6 TIGR01116 ATPase-IIA1_Ca calci 100.0 8.6E-31 2.2E-35 207.2 7.3 154 130-289 443-598 (800)
7 TIGR01522 ATPase-IIA2_Ca calci 100.0 6.7E-31 1.7E-35 207.9 6.6 278 6-285 320-640 (856)
8 COG0474 MgtA Cation transport 100.0 3.1E-29 7.8E-34 197.7 9.1 157 137-293 532-698 (917)
9 TIGR01511 ATPase-IB1_Cu copper 100.0 1.4E-30 3.7E-35 205.8 1.9 234 4-294 216-489 (545)
10 TIGR01517 ATPase-IIB_Ca calciu 100.0 6.2E-29 1.6E-33 195.8 9.2 147 138-285 532-680 (885)
11 TIGR01647 ATPase-IIIA_H plasma 100.0 1E-29 2.6E-34 200.6 4.5 156 138-293 472-640 (835)
12 PRK10517 magnesium-transportin 100.0 1.6E-28 4E-33 193.4 7.4 153 138-290 534-691 (900)
13 TIGR01494 ATPase_P-type ATPase 99.9 1.1E-28 2.8E-33 194.4 5.3 228 6-293 212-439 (478)
14 PRK10671 copA copper exporting 99.9 9.3E-29 2.4E-33 194.8 4.6 128 145-293 643-771 (834)
15 PRK01122 potassium-transportin 99.9 2.3E-27 5.8E-32 186.3 9.9 127 143-290 441-568 (684)
16 COG2217 ZntA Cation transport 99.9 3.9E-27 1E-31 184.8 8.8 130 143-293 528-658 (713)
17 TIGR01525 ATPase-IB_hvy heavy 99.9 2.5E-27 6.5E-32 186.0 6.7 135 142-293 440-583 (639)
18 KOG0202 consensus 99.9 5.4E-27 1.4E-31 184.0 6.1 150 138-287 570-731 (972)
19 PRK11033 zntA zinc/cadmium/mer 99.9 4.9E-26 1.3E-30 178.1 8.8 128 143-293 557-685 (739)
20 TIGR01512 ATPase-IB2_Cd cadmiu 99.9 5.2E-27 1.3E-31 184.1 3.4 188 78-291 232-441 (494)
21 KOG0207 consensus 99.9 1E-24 2.7E-29 170.0 7.0 128 145-293 716-844 (951)
22 TIGR01523 ATPase-IID_K-Na pota 99.9 8.4E-25 2.1E-29 170.6 6.0 266 16-286 436-746 (1001)
23 TIGR01497 kdpB K+-transporting 99.9 8E-25 2E-29 170.7 4.6 120 142-282 436-556 (675)
24 TIGR00099 Cof-subfamily Cof-li 99.9 2.2E-22 5.7E-27 155.7 12.6 251 6-286 9-270 (270)
25 TIGR01524 ATPase-IIIB_Mg magne 99.9 2.1E-23 5.5E-28 162.0 7.1 267 7-282 360-675 (892)
26 KOG0204 consensus 99.9 1.8E-23 4.7E-28 162.4 5.4 152 139-290 634-795 (1034)
27 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.9 4.6E-22 1.2E-26 153.8 11.1 183 82-264 1-202 (204)
28 PRK10976 putative sugar phosph 99.9 1.9E-21 4.9E-26 150.0 13.1 245 6-286 12-260 (266)
29 PRK10530 phosphotransferase; P 99.9 6.4E-21 1.6E-25 146.8 14.3 249 6-286 13-267 (272)
30 TIGR01488 HAD-SF-IB HAD-superf 99.9 4.5E-21 1.2E-25 147.7 11.8 173 82-254 1-204 (204)
31 pfam08282 Hydrolase_3 haloacid 99.9 2E-20 5.2E-25 143.7 13.6 246 6-286 8-254 (254)
32 TIGR01491 HAD-SF-IB-PSPlk Phos 99.9 3.7E-21 9.5E-26 148.2 9.8 187 78-265 3-195 (203)
33 PRK10513 sugar phosphatase; Pr 99.9 4.6E-20 1.2E-24 141.6 15.1 253 1-286 3-264 (270)
34 COG2216 KdpB High-affinity K+ 99.8 2.5E-21 6.4E-26 149.3 3.3 125 143-288 438-563 (681)
35 KOG0203 consensus 99.8 1.4E-20 3.5E-25 144.8 6.4 146 138-283 576-755 (1019)
36 PRK01158 phosphoglycolate phos 99.8 9.1E-19 2.3E-23 133.6 14.2 76 211-286 145-221 (226)
37 PRK00192 mannosyl-3-phosphogly 99.8 4.3E-18 1.1E-22 129.5 11.2 78 209-286 182-265 (275)
38 COG0561 Cof Predicted hydrolas 99.8 1.5E-17 3.9E-22 126.1 13.4 241 6-287 13-258 (264)
39 pfam05116 S6PP Sucrose-6F-phos 99.7 2.5E-17 6.5E-22 124.8 11.1 81 206-286 152-242 (247)
40 PRK13223 phosphoglycolate phos 99.7 9.1E-17 2.3E-21 121.4 13.8 206 76-294 9-237 (272)
41 KOG0205 consensus 99.7 1.6E-17 4E-22 126.1 6.4 152 142-293 482-643 (942)
42 PRK13227 consensus 99.7 4.7E-15 1.2E-19 110.9 13.8 129 149-289 93-227 (228)
43 TIGR01106 ATPase-IIC_X-K Na,H/ 99.7 6.7E-17 1.7E-21 122.2 4.0 161 123-283 538-733 (998)
44 PRK13222 phosphoglycolate phos 99.6 1.8E-14 4.6E-19 107.3 13.4 130 150-291 91-226 (228)
45 PRK13229 consensus 99.6 4.9E-14 1.3E-18 104.7 13.1 125 150-286 92-221 (234)
46 TIGR01487 SPP-like SPP-like hy 99.6 8.1E-15 2.1E-19 109.5 8.4 204 6-278 11-215 (223)
47 PRK13226 phosphoglycolate phos 99.6 1.3E-13 3.4E-18 102.0 12.9 191 78-278 2-210 (221)
48 PRK13288 pyrophosphatase PpaX; 99.6 2.4E-13 6.1E-18 100.5 14.0 125 151-287 81-211 (214)
49 TIGR02137 HSK-PSP phosphoserin 99.5 4.6E-14 1.2E-18 104.8 10.1 173 81-268 2-177 (203)
50 PRK13228 consensus 99.5 3.8E-13 9.7E-18 99.2 14.5 125 150-286 94-224 (232)
51 COG0546 Gph Predicted phosphat 99.5 1.4E-12 3.7E-17 95.7 14.6 125 151-287 88-218 (220)
52 PRK09552 mtnX 2-hydroxy-3-keto 99.5 5.3E-13 1.4E-17 98.3 12.0 202 80-286 2-211 (219)
53 TIGR03333 salvage_mtnX 2-hydro 99.5 3.8E-13 9.6E-18 99.3 11.0 200 82-286 1-208 (214)
54 PRK10826 2-deoxyglucose-6-phos 99.5 7.4E-13 1.9E-17 97.5 12.3 188 76-276 3-211 (222)
55 TIGR01657 P-ATPase-V P-type AT 99.4 4.9E-14 1.3E-18 104.7 3.7 158 105-262 713-999 (1350)
56 pfam00702 Hydrolase haloacid d 99.4 2.5E-12 6.3E-17 94.3 12.0 98 148-255 93-190 (190)
57 TIGR03351 PhnX-like phosphonat 99.4 4.9E-12 1.2E-16 92.4 13.3 191 81-285 2-218 (220)
58 PRK09484 3-deoxy-D-manno-octul 99.4 5.8E-13 1.5E-17 98.1 7.5 137 78-278 22-159 (186)
59 TIGR01652 ATPase-Plipid phosph 99.4 5.4E-13 1.4E-17 98.3 5.7 149 139-287 778-1009(1249)
60 KOG0209 consensus 99.4 3.3E-13 8.4E-18 99.6 4.5 127 138-264 661-836 (1160)
61 pfam06888 Put_Phosphatase Puta 99.3 2.9E-11 7.3E-16 87.7 11.4 176 82-260 2-195 (234)
62 KOG0206 consensus 99.3 4.7E-12 1.2E-16 92.5 6.8 151 138-288 637-850 (1151)
63 PRK11587 putative phosphatase; 99.3 4.5E-11 1.1E-15 86.6 11.7 116 150-276 81-199 (218)
64 PRK13224 consensus 99.3 5.4E-11 1.4E-15 86.1 11.5 123 150-286 84-211 (216)
65 COG4087 Soluble P-type ATPase 99.3 1.3E-11 3.3E-16 89.9 8.1 108 148-275 26-137 (152)
66 TIGR01449 PGP_bact phosphoglyc 99.2 1.5E-10 3.8E-15 83.4 9.7 147 130-286 80-230 (230)
67 PRK13478 phosphonoacetaldehyde 99.2 1.3E-09 3.2E-14 77.7 13.4 130 146-284 95-255 (267)
68 cd01427 HAD_like Haloacid deha 99.2 3E-10 7.6E-15 81.5 9.6 112 149-260 21-139 (139)
69 KOG0210 consensus 99.2 6.2E-11 1.6E-15 85.7 5.7 165 120-287 624-836 (1051)
70 TIGR01482 SPP-subfamily Sucros 99.1 7.6E-11 1.9E-15 85.2 6.1 110 171-281 118-234 (247)
71 KOG3120 consensus 99.1 1.7E-09 4.4E-14 76.9 12.6 180 78-260 11-208 (256)
72 COG1778 Low specificity phosph 99.1 6.3E-11 1.6E-15 85.7 4.6 137 78-278 6-143 (170)
73 PRK10563 6-phosphogluconate ph 99.1 8.6E-10 2.2E-14 78.7 9.8 194 79-286 3-212 (221)
74 PRK13225 phosphoglycolate phos 99.1 8.7E-10 2.2E-14 78.7 9.8 186 78-278 60-261 (273)
75 KOG0208 consensus 99.1 1.4E-10 3.5E-15 83.6 4.3 148 137-286 690-902 (1140)
76 TIGR01489 DKMTPPase-SF 2,3-dik 99.0 1.8E-09 4.5E-14 76.8 7.5 173 81-256 2-199 (207)
77 COG4030 Uncharacterized protei 99.0 1.8E-08 4.5E-13 70.7 11.5 150 138-289 69-264 (315)
78 PRK11590 hypothetical protein; 98.9 2.6E-08 6.6E-13 69.6 11.7 182 76-263 2-204 (211)
79 COG4359 Uncharacterized conser 98.9 2.2E-08 5.6E-13 70.1 9.9 174 81-260 4-184 (220)
80 COG0637 Predicted phosphatase/ 98.9 4.7E-08 1.2E-12 68.1 11.3 170 80-261 2-186 (221)
81 TIGR01670 YrbI-phosphatas 3-de 98.9 8.1E-09 2.1E-13 72.7 7.1 134 81-278 2-136 (154)
82 PRK10725 fructose-1-phosphatas 98.8 5.4E-08 1.4E-12 67.7 10.3 167 79-260 4-185 (188)
83 PRK09449 nucleotidase; Provisi 98.7 7.2E-07 1.8E-11 60.8 13.4 123 149-286 92-222 (225)
84 PRK08238 hypothetical protein; 98.7 1.9E-07 4.9E-12 64.4 9.2 163 79-270 11-176 (481)
85 PRK03669 mannosyl-3-phosphogly 98.7 3E-06 7.7E-11 57.0 15.1 93 158-261 135-232 (271)
86 PRK06698 bifunctional 5'-methy 98.7 5.6E-07 1.4E-11 61.5 11.3 189 78-283 239-450 (459)
87 TIGR02253 CTE7 HAD superfamily 98.7 2.5E-07 6.3E-12 63.7 9.3 118 148-275 109-238 (244)
88 PRK10748 flavin mononucleotide 98.3 1.9E-05 4.7E-10 52.2 11.2 116 150-285 111-237 (238)
89 PRK12702 mannosyl-3-phosphogly 98.3 3.1E-05 8E-10 50.8 11.9 42 219-260 208-251 (302)
90 COG1011 Predicted hydrolase (H 98.1 8.2E-05 2.1E-09 48.2 11.4 98 151-261 98-199 (229)
91 TIGR01990 bPGM beta-phosphoglu 98.1 3.6E-05 9.3E-10 50.4 9.5 165 81-260 2-189 (190)
92 TIGR02009 PGMB-YQAB-SF beta-ph 98.0 0.00012 3.1E-09 47.2 10.4 171 81-257 2-207 (211)
93 TIGR02254 YjjG/YfnB HAD superf 97.9 6.1E-05 1.6E-09 49.0 7.5 108 143-262 94-206 (233)
94 TIGR01484 HAD-SF-IIB HAD-super 97.9 1.1E-05 2.9E-10 53.5 3.7 54 207-260 199-261 (261)
95 TIGR01549 HAD-SF-IA-v1 HAD-sup 97.9 0.00014 3.6E-09 46.8 9.1 146 82-255 1-151 (151)
96 TIGR01428 HAD_type_II haloacid 97.6 0.00086 2.2E-08 42.0 9.6 169 81-260 2-199 (207)
97 TIGR01662 HAD-SF-IIIA hydrolas 97.5 0.00043 1.1E-08 43.8 7.2 107 152-258 28-162 (171)
98 TIGR02461 osmo_MPG_phos mannos 97.5 0.00011 2.8E-09 47.5 3.7 44 217-260 202-247 (248)
99 COG2179 Predicted hydrolase of 97.5 0.00025 6.3E-09 45.3 5.4 86 151-257 45-133 (175)
100 pfam05822 UMPH-1 Pyrimidine 5' 97.4 0.0015 3.7E-08 40.6 9.0 163 125-287 60-243 (246)
101 TIGR01509 HAD-SF-IA-v3 HAD-sup 97.3 0.0089 2.3E-07 35.8 11.5 151 82-258 1-153 (156)
102 PRK09456 phosphatase; Provisio 97.2 0.0093 2.4E-07 35.7 11.2 175 81-266 1-190 (199)
103 KOG2914 consensus 97.2 0.01 2.6E-07 35.4 11.3 184 78-275 8-213 (222)
104 PRK06769 hypothetical protein; 97.2 0.001 2.6E-08 41.5 6.2 125 151-286 27-172 (175)
105 PRK05446 imidazole glycerol-ph 97.2 0.0022 5.5E-08 39.5 7.6 112 150-262 28-149 (354)
106 PRK08942 D,D-heptose 1,7-bisph 97.2 0.0012 3.1E-08 41.1 6.2 123 151-285 28-175 (181)
107 TIGR02726 phenyl_P_delta pheny 97.2 0.00036 9.2E-09 44.3 3.3 97 162-277 44-141 (169)
108 TIGR01544 HAD-SF-IE HAD-superf 97.1 0.001 2.6E-08 41.6 5.2 177 76-252 24-236 (287)
109 TIGR02463 MPGP_rel mannosyl-3- 97.0 0.0006 1.5E-08 43.0 3.3 186 20-260 21-223 (224)
110 TIGR01993 Pyr-5-nucltdase pyri 96.9 0.0095 2.4E-07 35.6 8.3 100 153-253 87-197 (205)
111 KOG3085 consensus 96.8 0.019 5E-07 33.7 9.6 179 78-269 5-222 (237)
112 PRK10530 phosphotransferase; P 96.6 0.008 2E-07 36.1 6.6 16 80-95 3-18 (272)
113 COG0241 HisB Histidinol phosph 96.5 0.014 3.6E-07 34.5 7.2 107 151-260 30-146 (181)
114 PRK10187 trehalose-6-phosphate 96.3 0.011 2.8E-07 35.3 5.4 65 209-276 164-232 (266)
115 TIGR01485 SPP_plant-cyano sucr 96.2 0.0047 1.2E-07 37.5 3.4 81 156-267 137-223 (257)
116 TIGR01668 YqeG_hyp_ppase HAD s 96.2 0.017 4.3E-07 34.1 6.1 104 75-249 29-147 (196)
117 TIGR01656 Histidinol-ppas hist 96.2 0.029 7.3E-07 32.7 7.2 152 81-257 1-192 (208)
118 TIGR01548 HAD-SF-IA-hyp1 HAD s 96.1 0.017 4.5E-07 34.0 5.8 104 139-254 140-245 (245)
119 PRK10513 sugar phosphatase; Pr 95.9 0.022 5.6E-07 33.4 5.6 36 157-192 25-60 (270)
120 COG0561 Cof Predicted hydrolas 95.8 0.043 1.1E-06 31.6 6.9 41 153-193 21-61 (264)
121 TIGR01454 AHBA_synth_RP AHBA s 95.8 0.012 3.1E-07 34.9 4.1 101 149-259 72-172 (206)
122 TIGR01672 AphA HAD superfamily 95.6 0.038 9.7E-07 31.9 5.9 172 61-260 40-221 (248)
123 COG3700 AphA Acid phosphatase 95.5 0.018 4.6E-07 33.9 3.9 93 151-260 113-210 (237)
124 pfam09419 DUF2010 Protein of u 95.3 0.032 8.3E-07 32.3 4.7 79 151-245 56-144 (166)
125 pfam11019 DUF2608 Protein of u 95.2 0.22 5.5E-06 27.3 10.8 110 150-260 78-204 (251)
126 PRK01158 phosphoglycolate phos 95.2 0.035 8.9E-07 32.2 4.6 34 6-41 13-46 (226)
127 PRK10444 UMP phosphatase; Prov 95.1 0.066 1.7E-06 30.4 5.7 62 215-276 171-241 (248)
128 KOG3128 consensus 94.9 0.035 9E-07 32.1 4.0 168 116-283 98-287 (298)
129 TIGR01663 PNK-3'Pase polynucle 94.9 0.061 1.6E-06 30.7 5.2 117 75-245 163-294 (526)
130 PRK10976 putative sugar phosph 94.9 0.047 1.2E-06 31.4 4.6 36 157-192 24-59 (266)
131 TIGR01545 YfhB_g-proteo HAD su 94.9 0.15 3.9E-06 28.3 7.0 176 78-257 3-197 (210)
132 PRK11009 aphA acid phosphatase 94.6 0.15 3.8E-06 28.3 6.5 89 151-260 113-208 (235)
133 pfam05116 S6PP Sucrose-6F-phos 94.5 0.075 1.9E-06 30.1 4.8 34 6-41 12-45 (247)
134 TIGR01261 hisB_Nterm histidino 94.5 0.048 1.2E-06 31.3 3.8 104 149-255 26-140 (165)
135 PRK00192 mannosyl-3-phosphogly 94.5 0.075 1.9E-06 30.1 4.7 52 6-74 16-67 (275)
136 COG3769 Predicted hydrolase (H 94.4 0.035 8.8E-07 32.2 2.9 42 220-261 192-235 (274)
137 smart00775 LNS2 LNS2 domain. T 93.9 0.44 1.1E-05 25.4 8.1 107 150-258 25-142 (157)
138 pfam03767 Acid_phosphat_B HAD 93.0 0.62 1.6E-05 24.5 9.9 92 148-249 116-210 (230)
139 pfam08645 PNK3P Polynucleotide 92.3 0.35 9E-06 26.0 5.2 81 152-246 29-128 (158)
140 TIGR01684 viral_ppase viral ph 92.2 0.27 6.8E-06 26.8 4.5 136 76-241 136-274 (323)
141 TIGR00213 GmhB_yaeD D,D-heptos 92.2 0.39 9.8E-06 25.8 5.3 123 150-275 24-171 (178)
142 TIGR02252 DREG-2 REG-2-like, H 92.2 0.79 2E-05 23.9 6.9 92 152-256 116-220 (224)
143 TIGR02247 HAD-1A3-hyp Epoxide 91.9 0.24 6.2E-06 27.0 4.0 89 150-243 103-194 (228)
144 pfam06941 NT5C 5' nucleotidase 91.4 0.81 2.1E-05 23.8 6.3 33 149-181 70-102 (191)
145 TIGR01685 MDP-1 magnesium-depe 91.3 0.11 2.7E-06 29.2 1.6 137 80-245 2-149 (183)
146 pfam08235 LNS2 LNS2 (Lipin/Ned 91.2 1 2.6E-05 23.2 7.1 107 150-258 25-141 (156)
147 cd04871 ACT_PSP_2 ACT domains 91.0 0.68 1.7E-05 24.3 5.6 67 4-74 1-84 (84)
148 pfam02358 Trehalose_PPase Treh 90.9 0.42 1.1E-05 25.5 4.4 68 209-276 155-233 (235)
149 TIGR02471 sucr_syn_bact_C sucr 90.6 0.36 9.1E-06 26.0 3.9 92 150-271 124-217 (241)
150 KOG3109 consensus 90.4 1.2 3.1E-05 22.7 9.2 104 153-262 101-205 (244)
151 COG0647 NagD Predicted sugar p 89.5 1.4 3.7E-05 22.3 7.9 42 219-260 191-233 (269)
152 PTZ00174 phosphomannomutase; P 89.2 0.52 1.3E-05 25.0 3.8 52 213-268 182-238 (247)
153 TIGR01681 HAD-SF-IIIC HAD-supe 89.1 0.3 7.7E-06 26.4 2.5 80 81-188 1-86 (179)
154 pfam05152 DUF705 Protein of un 87.8 1.2 3.2E-05 22.7 4.9 21 77-97 119-139 (297)
155 PRK04554 consensus 86.0 1.1 2.9E-05 22.9 3.9 41 157-197 152-195 (327)
156 KOG3040 consensus 85.9 1 2.7E-05 23.1 3.7 31 218-248 181-211 (262)
157 TIGR01422 phosphonatase phosph 80.6 3.9 9.8E-05 19.7 5.1 109 138-255 83-193 (199)
158 PRK02270 consensus 80.2 2.7 6.9E-05 20.6 3.9 35 157-191 150-186 (327)
159 TIGR01459 HAD-SF-IIA-hyp4 HAD- 79.5 4.2 0.00011 19.4 6.2 24 15-38 24-47 (243)
160 PRK02812 ribose-phosphate pyro 79.2 3.5 8.8E-05 19.9 4.2 34 157-190 166-202 (331)
161 PRK02269 ribose-phosphate pyro 78.8 2.9 7.5E-05 20.4 3.8 41 156-196 149-194 (321)
162 COG4996 Predicted phosphatase 77.5 4.8 0.00012 19.1 5.0 123 81-245 1-126 (164)
163 pfam00875 DNA_photolyase DNA p 77.4 2.4 6.1E-05 20.9 3.0 67 155-234 53-119 (164)
164 TIGR01533 lipo_e_P4 5'-nucleot 76.2 5.2 0.00013 18.8 8.4 141 67-254 86-235 (295)
165 pfam03031 NIF NLI interacting 75.3 4.8 0.00012 19.1 4.0 96 150-260 26-122 (151)
166 KOG2882 consensus 74.9 2.7 7E-05 20.6 2.7 45 213-257 219-264 (306)
167 COG1877 OtsB Trehalose-6-phosp 74.7 1.6 4.1E-05 22.0 1.5 88 209-296 172-265 (266)
168 PRK05259 consensus 74.3 4.4 0.00011 19.3 3.6 36 160-195 148-187 (310)
169 PRK01132 consensus 74.1 5.9 0.00015 18.5 4.3 40 158-198 143-184 (286)
170 TIGR02346 chap_CCT_theta T-com 73.5 5.9 0.00015 18.5 4.1 37 156-192 277-313 (554)
171 COG4229 Predicted enolase-phos 73.5 6.1 0.00016 18.4 6.1 102 149-260 100-202 (229)
172 PRK00934 ribose-phosphate pyro 73.0 4.2 0.00011 19.4 3.3 40 157-196 142-183 (286)
173 PRK01999 consensus 71.0 5.8 0.00015 18.6 3.6 43 157-199 149-194 (311)
174 smart00577 CPDc catalytic doma 70.2 4.8 0.00012 19.1 3.0 84 149-245 42-125 (148)
175 TIGR01457 HAD-SF-IIA-hyp2 HAD- 69.6 3.6 9.1E-05 19.9 2.3 39 218-256 178-219 (251)
176 TIGR02076 pyrH_arch uridylate 67.4 4.1 0.0001 19.5 2.2 34 153-189 95-130 (232)
177 TIGR01452 PGP_euk phosphoglyco 65.3 4.7 0.00012 19.1 2.2 33 214-246 207-239 (288)
178 TIGR02995 ectoine_ehuB ectoine 63.6 9.8 0.00025 17.2 4.9 35 225-259 157-193 (285)
179 TIGR01188 drrA daunorubicin re 62.7 4.9 0.00012 19.0 1.9 127 66-192 55-202 (343)
180 TIGR00761 argB acetylglutamate 61.1 11 0.00028 16.9 3.5 30 149-178 135-164 (254)
181 pfam05761 5_nucleotid 5' nucle 52.9 15 0.00038 16.0 9.8 98 152-252 183-312 (448)
182 TIGR01664 DNA-3'-Pase DNA 3'-p 51.1 8.9 0.00023 17.4 1.6 20 77-96 16-35 (239)
183 COG2503 Predicted secreted aci 49.1 17 0.00044 15.7 6.6 88 149-254 119-212 (274)
184 COG5012 Predicted cobalamin bi 45.8 16 0.0004 15.9 2.2 43 153-195 168-211 (227)
185 TIGR01124 ilvA_2Cterm threonin 42.0 16 0.00041 15.8 1.8 80 148-246 228-307 (508)
186 TIGR02623 G1P_cyt_trans glucos 38.7 22 0.00055 15.1 2.0 23 227-249 113-135 (256)
187 CHL00202 argB acetylglutamate 37.5 13 0.00034 16.4 0.8 42 151-192 144-196 (284)
188 cd03334 Fab1_TCP TCP-1 like do 36.1 27 0.0007 14.4 3.2 39 154-192 116-154 (261)
189 PRK03092 ribose-phosphate pyro 35.0 29 0.00073 14.3 2.8 32 159-190 136-171 (304)
190 PRK13168 rumA 23S rRNA 5-methy 33.1 31 0.00078 14.1 3.9 10 272-281 392-401 (440)
191 TIGR01486 HAD-SF-IIB-MPGP mann 31.6 28 0.00073 14.3 1.7 45 217-261 181-227 (262)
192 TIGR02104 pulA_typeI pullulana 31.3 33 0.00084 14.0 2.5 18 156-173 250-267 (655)
193 PRK05279 N-acetylglutamate syn 31.1 25 0.00064 14.7 1.4 17 157-173 157-173 (441)
194 pfam10113 Fibrillarin_2 Fibril 31.0 33 0.00085 13.9 2.6 21 227-247 214-234 (505)
195 TIGR01460 HAD-SF-IIA HAD-super 30.8 34 0.00086 13.9 3.5 24 234-257 273-297 (304)
196 PRK10886 DnaA initiator-associ 30.1 35 0.00088 13.8 4.8 14 175-188 49-62 (196)
197 KOG2630 consensus 30.0 35 0.00088 13.8 6.9 101 150-260 121-222 (254)
198 PRK07199 phosphoribosylpyropho 30.0 33 0.00085 13.9 1.8 41 158-198 149-191 (301)
199 PRK02039 consensus 28.8 36 0.00093 13.7 4.4 37 159-195 153-192 (316)
200 TIGR01458 HAD-SF-IIA-hyp3 HAD- 28.8 36 0.00093 13.7 3.1 32 215-246 177-208 (258)
201 TIGR01283 nifE nitrogenase MoF 26.1 41 0.001 13.4 2.4 131 157-289 246-406 (470)
202 pfam05343 Peptidase_M42 M42 gl 25.2 42 0.0011 13.3 2.3 42 218-260 223-264 (292)
203 TIGR00397 mauM_napG MauM/NapG 24.7 34 0.00086 13.9 1.1 20 241-260 107-126 (213)
204 pfam05872 DUF853 Bacterial pro 24.2 44 0.0011 13.2 2.3 36 155-190 279-314 (504)
205 COG4739 Uncharacterized protei 24.1 18 0.00046 15.5 -0.4 28 248-277 115-142 (182)
206 PRK12290 thiE thiamine-phospha 23.4 46 0.0012 13.1 4.8 89 161-262 295-396 (439)
207 TIGR01493 HAD-SF-IA-v2 HAD-sup 22.8 47 0.0012 13.0 2.4 145 83-249 2-157 (162)
208 cd02067 B12-binding B12 bindin 22.7 47 0.0012 13.0 2.9 43 155-197 65-109 (119)
209 COG0731 Fe-S oxidoreductases [ 21.2 51 0.0013 12.8 6.3 94 150-249 90-189 (296)
210 TIGR00750 lao LAO/AO transport 21.0 51 0.0013 12.8 8.3 18 157-174 125-142 (333)
211 cd03017 PRX_BCP Peroxiredoxin 20.9 51 0.0013 12.8 3.7 37 157-193 46-82 (140)
No 1
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=100.00 E-value=0 Score=337.66 Aligned_cols=270 Identities=33% Similarity=0.538 Sum_probs=234.2
Q ss_pred CCCHHHHHHHHHHHCCCCCEECCCCEE-EEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCC--CCCCCEEEECCCEEE
Q ss_conf 689999999998607888357318804-99982688894899999998402168634621455--553444872275026
Q gi|254780960|r 15 ILNISLVKQIMQIVNSSIFYWLADSIA-CDIILPLEGMIDHHRSKILSIIADKPIDLIIHRHE--NRRKNLLIADMDSTM 91 (297)
Q Consensus 15 ~l~~~~~~~i~~~~~~~~~~~La~~~A-~e~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~--~~~~~l~~~d~d~tl 91 (297)
.+++.....++...+....+.-+=... .+. +-..+.+.+ .......+.++|++..... .|.+++++||||||+
T Consensus 46 ~l~~~~~~~~~~~~g~~~~i~~~w~v~~y~v-~~~~g~~~~---~~~~~~~~~~~d~~~~~~~p~l~~pgLvVfDMDSTl 121 (322)
T PRK11133 46 GLDKQRLTDYQFKLGAAMVIVAAWCVEDYQV-IRLAGSLTP---RATRLAHELGLDVAPLGKIPHLRTPGLLVMDMDSTA 121 (322)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEEEECCEEE-EEECCCCCH---HHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCC
T ss_conf 8998999999998387558987776156169-996376737---899999974876664146854467985999575403
Q ss_pred EECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 52452002788741223277888765202441001234556876420045689887421134543389999998419869
Q gi|254780960|r 92 IEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGAST 171 (297)
Q Consensus 92 i~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v 171 (297)
|.+|++|++++..|+..++.++|+++|+|+++|.+++.+|+.++++.+..++... ....+++||+++++++++++|+++
T Consensus 122 I~~E~IDELA~~aGv~~eVa~ITerAM~GELDF~eSL~~RVaLLkGl~~s~l~~v-~~~i~l~pGA~eLv~~lk~~G~k~ 200 (322)
T PRK11133 122 IQIECIDEIAKLAGVGEEVAEVTERAMRGELDFEASLRQRVATLKGADANILQQV-RENLPLMPGLTELVLKLQALGWKV 200 (322)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHH-HHHCCCCCCHHHHHHHHHHCCCEE
T ss_conf 2254599999980987899999999978987879999999999779999999999-974877966999999999879989
Q ss_pred EEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
Q ss_conf 99816723422322655086413431010000000000156310521138877532331037766799997892348899
Q gi|254780960|r 172 LLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDML 251 (297)
Q Consensus 172 ~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL 251 (297)
+++||+|.+|++++++++|++++++|.+++.++.+||++.++++++..|.+.+++++++++++.++|+|+|||.||++||
T Consensus 201 alVSGGFt~fa~~l~~~Lg~D~~~AN~Lei~dg~LTG~V~GpIvd~~~K~~~L~~la~~~gi~~~~tVAVGDGANDL~Ml 280 (322)
T PRK11133 201 AIASGGFTYFADYLKDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEYEIPLAQTVAIGDGANDLPMM 280 (322)
T ss_pred EEECCCHHHHHHHHHHHCCCCEEEEEEEEEECCEEECEECCCCCCHHHHHHHHHHHHHHHCCCHHHEEEEECCHHHHHHH
T ss_conf 99858817999999997398868702679878997443516657879999999999998098989989992378879999
Q ss_pred HHCCCEEEECCCHHHHHHCCEEEECCCHHHHHHHCCCC
Q ss_conf 84893189879578998589899569832767870988
Q gi|254780960|r 252 RVAGYGVAFHAKPALAKQAKIRIDHSDLEALLYIQGYK 289 (297)
Q Consensus 252 ~~AgvGVA~~a~~~v~~~Ad~~~~~~dl~~~l~~~g~~ 289 (297)
+.||+||||+|+|.|+++|++++++.||+++||+|--+
T Consensus 281 ~~AGlGVAf~AKP~V~~~A~~~In~~dL~~lL~iLs~~ 318 (322)
T PRK11133 281 KAAGLGIAYHAKPKVNEQAQVTIRHADLMGVLCILSGS 318 (322)
T ss_pred HHCCCCEEECCCHHHHHHCCEEECCCCHHHHHHHHCCC
T ss_conf 85798668448889997489667258887999982676
No 2
>TIGR00338 serB phosphoserine phosphatase SerB; InterPro: IPR004469 Phosphoserine phosphatase (SerB), (3.1.3.3 from EC), also known as O-phosphoserine phosphohydrolase, is involved in both serine and glycine biosynthesis. It catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate, which is the last step in the biosynthesis of serine from carbohydrates. The reaction proceeds via the formation of a phosphoryl-enzyme intermediate. It acts as a homodimer, and requires magnesium as a cofactor.; GO: 0004647 phosphoserine phosphatase activity, 0006564 L-serine biosynthetic process.
Probab=100.00 E-value=0 Score=339.79 Aligned_cols=211 Identities=43% Similarity=0.709 Sum_probs=205.4
Q ss_pred CCCCCCEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 55534448722750265245200278874122327788876520244100123455687642004568988742113454
Q gi|254780960|r 76 ENRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNP 155 (297)
Q Consensus 76 ~~~~~~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (297)
-.+.+++++||||||+|+.|+||++|+.+|+++++..+|++||+|+++|.++++.|+.++++.+..+.........|++|
T Consensus 10 ~~~~~~L~VFD~DSTli~~E~IDeiAk~AGVee~V~~iTerAM~Ge~dF~~SLr~RV~lLKg~~~~~~~~~v~~~l~L~~ 89 (223)
T TIGR00338 10 LLRSKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKESLRERVKLLKGLPVEVLLKKVRERLPLTE 89 (223)
T ss_pred HHHHCCCEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCC
T ss_conf 45205726860227877542588898751845789999999718998888999999986179827899999973789997
Q ss_pred CHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCH--HHHHCCCCH-HHCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 33899999984198699981672342232265508641--343101000-000000015631052113887753233103
Q gi|254780960|r 156 GGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ--YYANRFIEK-DDRLTGQVMEPIIDGTAKSQILLEAIQKLQ 232 (297)
Q Consensus 156 ~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~--~~a~~~~~~-~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~ 232 (297)
|+.++|+.|+.+||+|.++||||..++++++.+|+++. ++||.+.++ ++.+||.+.+.++....|.+.+..++..++
T Consensus 90 G~~Elv~~L~~~gykVav~SGGF~~~a~~~k~~L~LD~tn~faN~L~~~~dG~LTG~v~G~~v~~~~K~~~l~~l~~~e~ 169 (223)
T TIGR00338 90 GAEELVKTLKEKGYKVAVISGGFDLFAEHLKDKLGLDYTNAFANRLEVEFDGKLTGLVEGDIVDASYKGETLLKLLEKEG 169 (223)
T ss_pred CHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHCCCHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 87899999988690799985776888988899857886472102004622773148423650000035089999999738
Q ss_pred CCCCEEEEEECCCCHHHHHHHCCCEEEECCCHHHHHHCCEEEECCCHHHHHHHC
Q ss_conf 776679999789234889984893189879578998589899569832767870
Q gi|254780960|r 233 INPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 233 ~~~~~v~avGDg~ND~pmL~~AgvGVA~~a~~~v~~~Ad~~~~~~dl~~~l~~~ 286 (297)
++.++++|||||.||+||++.||.||||||+|++++.||++|++.||+.++++|
T Consensus 170 i~~~~~vavGDGANDl~m~~~AglgIAF~AKp~l~~~A~~~i~~~dL~~i~~~l 223 (223)
T TIGR00338 170 ISLENTVAVGDGANDLSMIKAAGLGIAFNAKPKLKQKADIVINKKDLTDILPLL 223 (223)
T ss_pred CCHHHEEEECCCCCHHHHHHHCCCEEEECCCCHHCCCCCEEECHHHHHHHHHHC
T ss_conf 882218776278560888862787341237600002157034547799998519
No 3
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-37 Score=246.27 Aligned_cols=210 Identities=42% Similarity=0.660 Sum_probs=202.4
Q ss_pred CCCCEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 53444872275026524520027887412232778887652024410012345568764200456898874211345433
Q gi|254780960|r 78 RRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGG 157 (297)
Q Consensus 78 ~~~~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (297)
+..++++||+|+||++.++++.++...+...++..++.++|++.+++..+...++..+.+.+............+++|++
T Consensus 3 ~~~~L~vFD~D~TLi~~~~~~~~~~~~g~~~~v~~~t~~~~~~~~~~~~~~~~~v~~l~g~~~~~v~~~~~~~~~l~~ga 82 (212)
T COG0560 3 RMKKLAVFDLDGTLINAELIDELARGAGVGEEVLAITERAMRGELDFEESLRLRVALLKGLPVEVLEEVREEFLRLTPGA 82 (212)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCH
T ss_conf 66656899668755408899999987176889999999984343208987999999967998999999998257678349
Q ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 89999998419869998167234223226550864134310100000000001563105211388775323310377667
Q gi|254780960|r 158 YELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPED 237 (297)
Q Consensus 158 ~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~ 237 (297)
.++++.|+..|+++++|||++..+++++++++|++.+++|.++.+++.+++.+.++.+.+..|...+.+++.++++++++
T Consensus 83 ~el~~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~~g~~~~~ 162 (212)
T COG0560 83 EELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAELGIPLEE 162 (212)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHH
T ss_conf 99999999769989999188699999999994975765020143177413615455526722899999999980989644
Q ss_pred EEEEECCCCHHHHHHHCCCEEEECCCHHHHHHCCEEEECCCHHHHHHHCC
Q ss_conf 99997892348899848931898795789985898995698327678709
Q gi|254780960|r 238 TIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEALLYIQG 287 (297)
Q Consensus 238 v~avGDg~ND~pmL~~AgvGVA~~a~~~v~~~Ad~~~~~~dl~~~l~~~g 287 (297)
++|||||.||+|||+.||.+||+|++|++++.|+..++..++..+++++|
T Consensus 163 ~~a~gDs~nDlpml~~ag~~ia~n~~~~l~~~a~~~~~~~~~~~~~~~~~ 212 (212)
T COG0560 163 TVAYGDSANDLPMLEAAGLPIAVNPKPKLRALADVRIWPIDLRAVLYLLG 212 (212)
T ss_pred EEEECCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCHHHHHHHHHHCC
T ss_conf 78873756139999967998698977799999886046135788887329
No 4
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=100.00 E-value=2.8e-35 Score=234.70 Aligned_cols=192 Identities=19% Similarity=0.290 Sum_probs=160.5
Q ss_pred CCEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCCCH
Q ss_conf 444872275026524520027887412232778887652024410012345568764--200456898874211345433
Q gi|254780960|r 80 KNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFK--GTSTKIIDSLLEKKITYNPGG 157 (297)
Q Consensus 80 ~~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 157 (297)
.++++||||||||. |+|+++++..|. .+ +...++++++|.+++.+|+.+++ +.+......... ..++.||+
T Consensus 1 mrLv~fDmDstLI~-Evi~elA~~~Gv-ee----~~~ttrgElDF~~sl~~RValLk~~Gl~~~~i~~v~~-~l~~~pGA 73 (205)
T PRK13582 1 MEIACLDLEGVLVP-EIWIAFAEKTGI-EE----LRATTRDIPDYDVLMKQRLDILDEHGLGLADIQEVIA-TLGPLPGA 73 (205)
T ss_pred CEEEEECCCCCCHH-HHHHHHHHHHCC-HH----HHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH-HCCCCCHH
T ss_conf 91899768777389-999999999794-89----9999859988899999999999777999899999999-67898139
Q ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCH-HHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899999984198699981672342232265508641343101000-0000000156310521138877532331037766
Q gi|254780960|r 158 YELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEK-DDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPE 236 (297)
Q Consensus 158 ~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~-~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~ 236 (297)
++.++.|+.+ ++++++||+|.+|++++++++|++.++||.++++ ++..+|.... ....|.+.+..+ +....
T Consensus 74 ~ell~~Lr~~-~~v~IvSGGF~~fa~~l~~~LG~d~~~aN~LeI~~~G~ltG~~~~---~~~~K~~~~~~l----~~~~~ 145 (205)
T PRK13582 74 VEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLETDENGRITGYQLR---QPDQKRQSVKAL----KSLNF 145 (205)
T ss_pred HHHHHHHHHC-CEEEEECCCHHHHHHHHHHHHCCCHHCCCCCEECCCCEEECCCCC---CCHHHHHHHHHH----HHCCC
T ss_conf 9999999970-739998686899999999994997530240376689949681324---727899999997----50027
Q ss_pred EEEEEECCCCHHHHHHHCCCEEEECCCHHHHHHCCEEEECCCHHHHHHHC
Q ss_conf 79999789234889984893189879578998589899569832767870
Q gi|254780960|r 237 DTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 237 ~v~avGDg~ND~pmL~~AgvGVA~~a~~~v~~~Ad~~~~~~dl~~~l~~~ 286 (297)
+|+|+|||+||+|||+.||.||||+|+|+|+++|-..-...++..|+=.+
T Consensus 146 ~tiAVGDGaNDL~Ml~~AglGIAF~Akp~V~~~ap~~~~~~~y~el~~~i 195 (205)
T PRK13582 146 RVIAAGDSYNDTTMLGEADAGILFHAPANVIAEFPQFPVVHDYDDLKKEI 195 (205)
T ss_pred CEEEEECCHHHHHHHHHCCCCEEECCCHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 87996476876999997796659549888898688995306899999999
No 5
>KOG1615 consensus
Probab=100.00 E-value=5e-34 Score=226.99 Aligned_cols=211 Identities=31% Similarity=0.477 Sum_probs=184.9
Q ss_pred CCCCCEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 55344487227502652452002788741223277888765202441001234556876420045689887421134543
Q gi|254780960|r 77 NRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPG 156 (297)
Q Consensus 77 ~~~~~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (297)
.+...+++||+|||+|.+|+||+++.+.|...++.++|+++|++.++|.+.+..|+.++.+....+..........++|+
T Consensus 13 ~~~~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~k~~lT~G 92 (227)
T KOG1615 13 WRSADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIKQKPTLTPG 92 (227)
T ss_pred HHHCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf 97537689956740327750899999967018999999998579876799999999874621999999986289866878
Q ss_pred HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCH--HHHHCCCCH-HHCCCC-CCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 3899999984198699981672342232265508641--343101000-000000-015631052113887753233103
Q gi|254780960|r 157 GYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ--YYANRFIEK-DDRLTG-QVMEPIIDGTAKSQILLEAIQKLQ 232 (297)
Q Consensus 157 ~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~--~~a~~~~~~-~~~~~~-~~~~~~~~~~~k~~~~~~l~~~~~ 232 (297)
+++++..|++.|.+++++||+|..++.+++.+|||+. +++|.+.++ ++.+++ ...++.+.+..|++.+..+++ +
T Consensus 93 i~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk--~ 170 (227)
T KOG1615 93 IRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRK--N 170 (227)
T ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--C
T ss_conf 99999999976986999747718889999987199676622222564357751354467862268861899999980--8
Q ss_pred CCCCEEEEEECCCCHHHHHHHCCCEEEECCCHHHHHHCCEEEECCCHHHHHHHCCCCHHH
Q ss_conf 776679999789234889984893189879578998589899569832767870988888
Q gi|254780960|r 233 INPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEALLYIQGYKKDE 292 (297)
Q Consensus 233 ~~~~~v~avGDg~ND~pmL~~AgvGVA~~a~~~v~~~Ad~~~~~~dl~~~l~~~g~~~~~ 292 (297)
...+.++|||||.||++|...|+..|++++ +.-.++...+..-+...+|.||++.+|
T Consensus 171 ~~~~~~~mvGDGatDlea~~pa~afi~~~g---~~~r~~vk~nak~~~~~f~~L~~~lde 227 (227)
T KOG1615 171 YNYKTIVMVGDGATDLEAMPPADAFIGFGG---NVIREGVKANAKWYVTDFYVLGGDLDE 227 (227)
T ss_pred CCHHEEEEECCCCCCCCCCCCHHHHHCCCC---CEECHHHHHCCHHHHHHHHHHCCCCCC
T ss_conf 882206785378654445783134422677---367476673107999999997132359
No 6
>TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782 This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=99.97 E-value=8.6e-31 Score=207.21 Aligned_cols=154 Identities=15% Similarity=0.193 Sum_probs=124.0
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCC
Q ss_conf 55687-64200456898874211345433899999984198699981672342232265508641343101000000000
Q gi|254780960|r 130 ERISL-FKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTG 208 (297)
Q Consensus 130 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~ 208 (297)
|.+++ .+.++..++.|+++.+||||+++++.++.||++||+|+|||||+..|+++|+++.|+...|.. -+++. -
T Consensus 443 RCLA~A~~~Es~Ltf~G~vGl~DPPR~EV~~ai~~CR~AGIrVImITGD~KeTA~AicR~IG~lsSfTG-~EF~~----m 517 (800)
T TIGR01116 443 RCLALAFKEESKLTFIGVVGLLDPPRPEVADAIEKCREAGIRVIMITGDNKETAEAICRRIGILSSFTG-REFDE----M 517 (800)
T ss_pred HHHHHEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCC-CHHHH----C
T ss_conf 411001214678678888506894816899999988737978999847982468999767501024200-03650----0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEECC-CHHHHHHCCEEEECCCHHHHHHHCC
Q ss_conf 015631052113887753233103776679999789234889984893189879-5789985898995698327678709
Q gi|254780960|r 209 QVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHA-KPALAKQAKIRIDHSDLEALLYIQG 287 (297)
Q Consensus 209 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~a-~~~v~~~Ad~~~~~~dl~~~l~~~g 287 (297)
+...-.++.+.-|.++.++++ ++...+.|+|+|||+||+||||.||+|||||. ++++|+++|.++-..||..+-.+.+
T Consensus 518 ~~~~~~~FSR~ePsHK~~lV~-~~~~~~i~AMTGDGVNDAPALK~AdIGIAMGSGTeVAK~ASdmVLADDNFaTIV~AV~ 596 (800)
T TIGR01116 518 GPKKALVFSRVEPSHKLRLVE-LQEQGQIVAMTGDGVNDAPALKKADIGIAMGSGTEVAKEASDMVLADDNFATIVKAVE 596 (800)
T ss_pred CCCCCEEEEECCCHHHHHHHH-HCCCCEEEEECCCCCCCCHHHCCCCCEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHC
T ss_conf 601466876058255787653-1156707873286977724334443023458616899998531002477254653310
Q ss_pred CC
Q ss_conf 88
Q gi|254780960|r 288 YK 289 (297)
Q Consensus 288 ~~ 289 (297)
==
T Consensus 597 EG 598 (800)
T TIGR01116 597 EG 598 (800)
T ss_pred CC
T ss_conf 46
No 7
>TIGR01522 ATPase-IIA2_Ca calcium-transporting P-type ATPase, PMR1-type; InterPro: IPR006413 This family describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates . The calcium P-type ATPases have been characterised as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump represented by IPR006408 from INTERPRO. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=99.97 E-value=6.7e-31 Score=207.87 Aligned_cols=278 Identities=16% Similarity=0.162 Sum_probs=179.5
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCCCEE----------------CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 998458887689999999998607888357----------------3188049998268889489999999840216863
Q gi|254780960|r 6 TLITHRSHPILNISLVKQIMQIVNSSIFYW----------------LADSIACDIILPLEGMIDHHRSKILSIIADKPID 69 (297)
Q Consensus 6 TLi~~~~~~~l~~~~~~~i~~~~~~~~~~~----------------La~~~A~e~~~~~~~~~~~~~~~l~~~~~~~~~d 69 (297)
.+||++++++||.+ ...+.+.|-.+...- ||+.--+.- =+..-...++.-+|-+.....|++
T Consensus 320 NVICSDKTGTLT~N-hMtvt~~~T~D~~~~~sl~~~~v~~~l~~G~lCNna~~~~-~a~~llG~ptd~ALie~~~~fgL~ 397 (856)
T TIGR01522 320 NVICSDKTGTLTKN-HMTVTKIWTVDELNAVSLDTVAVEKILEAGNLCNNAKFRN-EADTLLGNPTDVALIELLEKFGLE 397 (856)
T ss_pred EEEEECCCCCCCCC-CCEEEEEEECCEEEECCCCCHHHHHHHHHHHHHCCHHHCC-CHHHCCCCHHHHHHHHHHHHCCCC
T ss_conf 05731788887777-5313102422512530458888999998864202202201-012005873579999999864898
Q ss_pred EEECCCC--------CCCC-CEEEECCCEE--E-EE---CCCCHHHHHHHHCCCH-HHHHHHHHHH---CCCCCHHHHH-
Q ss_conf 4621455--------5534-4487227502--6-52---4520027887412232-7788876520---2441001234-
Q gi|254780960|r 70 LIIHRHE--------NRRK-NLLIADMDST--M-IE---QECIDELADLIGIKEK-VSLITARAMN---GEIPFQDSLR- 129 (297)
Q Consensus 70 ~~~~~~~--------~~~~-~l~~~d~d~t--l-i~---~~~l~~~a~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~- 129 (297)
-.-+.+. ..|+ ..+..--|++ . .. +.++.....+.....+ -..+|++... ....--....
T Consensus 398 D~r~t~~r~~E~pFsS~rK~M~v~~~~~~~~~~f~KGA~E~v~~yc~~Y~~~dG~kt~~Lt~~~k~~~~~~~~~Ma~~GL 477 (856)
T TIGR01522 398 DLRETYKRVAEVPFSSERKWMAVKVVTDSKEMVFVKGAYEQVLKYCTYYLKKDGKKTEELTEEQKEKIQEEAAEMASEGL 477 (856)
T ss_pred CCCCCCCEEECCCCCCCCCEEEEEEEECCCCEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 74210002321366864401356666178747886075101233454544057841157789999999898763200666
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCC---HHHHHCC-CCHHH
Q ss_conf 5568764-20045689887421134543389999998419869998167234223226550864---1343101-00000
Q gi|254780960|r 130 ERISLFK-GTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFD---QYYANRF-IEKDD 204 (297)
Q Consensus 130 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~---~~~a~~~-~~~~~ 204 (297)
|.++... .....++.|+.+..|||||+++++|+.|-.-|++++|||||...+|-.||+++|+. .-.+..+ ..++.
T Consensus 478 Rv~A~A~~~~~~L~F~GL~G~~DPPRp~V~~Av~~L~~gGV~v~MITGDS~~TAv~IA~~lG~~~~~~~~G~~Ld~md~~ 557 (856)
T TIGR01522 478 RVIAFASGTEKDLVFLGLVGINDPPRPDVKEAVERLLTGGVRVIMITGDSEETAVSIARRLGMPVKSSKEGEKLDEMDDQ 557 (856)
T ss_pred EEEEEEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCHH
T ss_conf 46656522568715761002659224862689999842891899981872899999987728657998541477631688
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEEC--CCHHHHHHCCEEEECCCHHHH
Q ss_conf 000001563105211388775323310377667999978923488998489318987--957899858989956983276
Q gi|254780960|r 205 RLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH--AKPALAKQAKIRIDHSDLEAL 282 (297)
Q Consensus 205 ~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~--a~~~v~~~Ad~~~~~~dl~~~ 282 (297)
.+..-+....++.+..|++|..+++.++..++.|+|+|||+||+||||.||+||||| +.|+.||+||.++...|+..+
T Consensus 558 ~L~~~v~~v~vFaRasP~hKmkIv~aLq~~GdVVAMTGDGVNDApALKlADIGvAMG~~GTDVAKEAADMiLtDDdF~TI 637 (856)
T TIGR01522 558 QLSEVVDKVAVFARASPEHKMKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAMGRTGTDVAKEAADMILTDDDFATI 637 (856)
T ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHCCCCEECCCHHHH
T ss_conf 89865230357630780678999999720898898868795517774053122116799851665524742115764667
Q ss_pred HHH
Q ss_conf 787
Q gi|254780960|r 283 LYI 285 (297)
Q Consensus 283 l~~ 285 (297)
|=+
T Consensus 638 LSA 640 (856)
T TIGR01522 638 LSA 640 (856)
T ss_pred HHH
T ss_conf 877
No 8
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.1e-29 Score=197.70 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHH-------HHCC-CCHHHCCCC
Q ss_conf 20045689887421134543389999998419869998167234223226550864134-------3101-000000000
Q gi|254780960|r 137 GTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYY-------ANRF-IEKDDRLTG 208 (297)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~-------a~~~-~~~~~~~~~ 208 (297)
.+...++.+.....||+|++++++++.|+++|++++|+|||+..++.+||+++|+..-. +..+ ...+..+..
T Consensus 532 ~E~dl~~lGl~g~~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~ 611 (917)
T COG0474 532 IESDLVFLGLTGIEDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAE 611 (917)
T ss_pred HHCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHCCHHHHHH
T ss_conf 20260402001212899711899999999889947998799989999999981998676642565159987368899999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEEC--CCHHHHHHCCEEEECCCHHHHHHHC
Q ss_conf 01563105211388775323310377667999978923488998489318987--9578998589899569832767870
Q gi|254780960|r 209 QVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH--AKPALAKQAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 209 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~--a~~~v~~~Ad~~~~~~dl~~~l~~~ 286 (297)
......++++..|++|.++++.++..++.|.|+|||+||+||||.||+||||+ +.+++|++||+++...++..+.-.+
T Consensus 612 ~~~~~~VfARvsP~qK~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGIamg~~Gtdaak~Aadivl~dd~~~~i~~av 691 (917)
T COG0474 612 LVEELSVFARVSPEQKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGGEGTDAAKEAADIVLLDDNFATIVLAV 691 (917)
T ss_pred HHHHCCEEEEECHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHCCEEEECCCHHHHHHHH
T ss_conf 88758989992789999999999977999999679716589997478267866653389883272088058789999999
Q ss_pred CCCHHHH
Q ss_conf 9888883
Q gi|254780960|r 287 GYKKDEI 293 (297)
Q Consensus 287 g~~~~~~ 293 (297)
-.-|.-|
T Consensus 692 ~eGR~~~ 698 (917)
T COG0474 692 VEGRRVY 698 (917)
T ss_pred HHHHHHH
T ss_conf 9989999
No 9
>TIGR01511 ATPase-IB1_Cu copper-translocating P-type ATPase; InterPro: IPR006403 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents P-type ATPases that specialise in cation and copper transport; those transporting copper (3.6.3.4 from EC) have been classified as belonging to the IB subfamily , , . These proteins are involved in a variety of processes in both prokaryotes and eukaryotes. Some of these P-ATPases import copper into cells, such as in Arabidopsis sp., which require copper to create functional hormone receptors for ethylene signalling. Other P-ATPases are involved in copper export out of cells, such as occurs with the efflux of hepatic copper into the bile in eukaryotes. In bacteria, some of these P-ATPases play a role in osmotic adaptation. Certain copper ATPases have been implicated in both Wilson and Menkes diseases . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0004008 copper-exporting ATPase activity, 0005524 ATP binding, 0046872 metal ion binding, 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0016020 membrane.
Probab=99.96 E-value=1.4e-30 Score=205.83 Aligned_cols=234 Identities=19% Similarity=0.202 Sum_probs=156.2
Q ss_pred EEEE-EECCCCCCCCHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCE
Q ss_conf 9999-845888768999999999860788835731880499982688894899999998402168634621455553444
Q gi|254780960|r 4 IATL-ITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSIIADKPIDLIIHRHENRRKNL 82 (297)
Q Consensus 4 v~TL-i~~~~~~~l~~~~~~~i~~~~~~~~~~~La~~~A~e~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~l 82 (297)
|++| |+||..-+|...++..+.....+...+.+..+.|.| ..+....
T Consensus 216 vtVliIACPCALGLA~Ptv~~VatG~aA~~GvL~K~g~alE--------------------------------~a~~~~~ 263 (545)
T TIGR01511 216 VTVLIIACPCALGLATPTVIMVATGVAAKNGVLIKDGDALE--------------------------------RAANIDT 263 (545)
T ss_pred HHEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEECCHHHH--------------------------------HHCCCCE
T ss_conf 11357746670047999999998788884572367647898--------------------------------5324898
Q ss_pred EEECCCEEEEECCC-------C-HHHHHH-HHC-----CCHHHHHHHHHHHCC------------CCCHHHHHHHHHHHH
Q ss_conf 87227502652452-------0-027887-412-----232778887652024------------410012345568764
Q gi|254780960|r 83 LIADMDSTMIEQEC-------I-DELADL-IGI-----KEKVSLITARAMNGE------------IPFQDSLRERISLFK 136 (297)
Q Consensus 83 ~~~d~d~tli~~~~-------l-~~~a~~-~~~-----~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 136 (297)
++||=.|||+.++. . +.+... ... +.....+.+.+.... .--++.+.++.++..
T Consensus 264 VvFDKTGTLT~G~~~V~~~~~~~~~~l~~a~~lE~~S~HPlA~AI~~y~~G~gv~g~~~g~~~~~~~Gn~~~~~~~~~~~ 343 (545)
T TIGR01511 264 VVFDKTGTLTQGKPTVTDVKVFSDSLLALAAALEASSEHPLAKAIVSYAKGKGVEGTVEGTKHKIQLGNEKLLGENGIKT 343 (545)
T ss_pred EEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCEEEEEEECHHHHHHCCCCC
T ss_conf 99847785316712798887666899999999741577808999999856972799983872489987679961104776
Q ss_pred H------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHH
Q ss_conf 2------------0045689887421134543389999998419869998167234223226550864134310100000
Q gi|254780960|r 137 G------------TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDD 204 (297)
Q Consensus 137 ~------------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~ 204 (297)
. .........+...|++||++++.|+.||+.|++++|+|||+..+++.+|+++||+ ++++
T Consensus 344 ~~~~~~~~~~~~~~~~~~l~~~~~~~D~lkp~a~~~i~~Lk~~Gi~~~mLtGDN~~~A~a~A~~lGI~-v~Ae------- 415 (545)
T TIGR01511 344 DEAAEGGTTSVLVAVNGELAGVLALADQLKPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN-VRAE------- 415 (545)
T ss_pred CCHHHCCEEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCE-EEEC-------
T ss_conf 63001570799998478279988664746886899999998759879998669879999999972833-3317-------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEECC-CHHHHHHCCEEEECCCHHHHH
Q ss_conf 0000015631052113887753233103776679999789234889984893189879-578998589899569832767
Q gi|254780960|r 205 RLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHA-KPALAKQAKIRIDHSDLEALL 283 (297)
Q Consensus 205 ~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~a-~~~v~~~Ad~~~~~~dl~~~l 283 (297)
+.+..|.+.++++.+ +.|+|||||+||+|+|..||+|||+++ .|...++||+++. +||.+++
T Consensus 416 ----------v~P~~K~a~ik~lq~------~~VaMVGDGiNDAPaLA~AdVGiAig~GtDVA~~aAD~vl~-~~L~~v~ 478 (545)
T TIGR01511 416 ----------VLPDDKAALIKELQE------KVVAMVGDGINDAPALAQADVGIAIGAGTDVAIEAADIVLL-NDLKDVA 478 (545)
T ss_pred ----------CCHHHHHHHHHHHHC------CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEC-CCCHHHH
T ss_conf ----------880768999999853------83788818867658997687766475566899973640131-7831489
Q ss_pred HHCCCCHHHHC
Q ss_conf 87098888830
Q gi|254780960|r 284 YIQGYKKDEIV 294 (297)
Q Consensus 284 ~~~g~~~~~~~ 294 (297)
.++-+|++.+-
T Consensus 479 ~ai~lSrkt~~ 489 (545)
T TIGR01511 479 TAIDLSRKTLR 489 (545)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999864
No 10
>TIGR01517 ATPase-IIB_Ca calcium-translocating P-type ATPase, PMCA-type; InterPro: IPR006408 This family describes the P-type ATPase responsible for translocating calcium ions across the plasma membrane of eukaryotes , out of the cell. In some organisms, this type of pump may also be found in vacuolar membranes . In humans and mice, at least, there are multiple isoforms of the PMCA pump with overlapping but not redundant functions. Accordingly, there are no human diseases linked to PMCA defects, although alterations of PMCA function do elicit physiological effects . The calcium P-type ATPases have been characterised as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump .; GO: 0005388 calcium-transporting ATPase activity, 0005509 calcium ion binding, 0005524 ATP binding, 0015085 calcium ion transmembrane transporter activity, 0006816 calcium ion transport, 0016020 membrane.
Probab=99.96 E-value=6.2e-29 Score=195.85 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCH
Q ss_conf 00456898874211345433899999984198699981672342232265508641343101000000000015631052
Q gi|254780960|r 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDG 217 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (297)
+...++....++.||+||++++.++.||++|+-|.|+||||-.||++||+..||...-..-.+-.+-+...-.....+.+
T Consensus 532 n~gl~~~~~vGI~DP~RpgV~eav~~cqrAGiTVRMVTGDNi~TA~AIAr~CgIL~~g~~~~EG~~FR~~~ILPkl~VlA 611 (885)
T TIGR01517 532 NKGLTLIAVVGIKDPVRPGVREAVQECQRAGITVRMVTGDNISTAKAIARNCGILTEGGLAMEGKEFRKDKILPKLRVLA 611 (885)
T ss_pred CCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCEEEE
T ss_conf 97369999970688989885216887301863899872881579999986325688983005773116666676337863
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEEC--CCHHHHHHCCEEEECCCHHHHHHH
Q ss_conf 11388775323310377667999978923488998489318987--957899858989956983276787
Q gi|254780960|r 218 TAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH--AKPALAKQAKIRIDHSDLEALLYI 285 (297)
Q Consensus 218 ~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~--a~~~v~~~Ad~~~~~~dl~~~l~~ 285 (297)
++.|..|+-|+. +...++.|+.+|||.||+||||.||+|.||+ +++.++|++|++++..|++++-..
T Consensus 612 RS~P~DK~lLV~-L~~~GeVVAVTGDGTNDaPALk~AdVGF~MGI~GTeVA~~aSDiiL~DDNF~sIV~A 680 (885)
T TIGR01517 612 RSSPLDKQLLVE-LKDMGEVVAVTGDGTNDAPALKLADVGFAMGIAGTEVAKEASDIILLDDNFASIVRA 680 (885)
T ss_pred CCCCHHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHCCCEEEECCHHHHHHHHHCCEEEECCCCHHHHEE
T ss_conf 388633378784-336831899846899864665115720560760578997609878874880352000
No 11
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase; InterPro: IPR006534 These sequences represent the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast . ; GO: 0016887 ATPase activity, 0015992 proton transport, 0016021 integral to membrane.
Probab=99.96 E-value=1e-29 Score=200.62 Aligned_cols=156 Identities=21% Similarity=0.151 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHH--HCCCCHHH----------C
Q ss_conf 00456898874211345433899999984198699981672342232265508641343--10100000----------0
Q gi|254780960|r 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYA--NRFIEKDD----------R 205 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a--~~~~~~~~----------~ 205 (297)
.....+.+++...||||++.+++|+..+..|++|+|||||+-.+++.+|++||+..-+- ..+...+. .
T Consensus 472 ~g~W~~~GllplfDPPR~DT~eTI~~A~~~GV~VKMvTGDhlaIAKEtaR~LGlGtni~~~~~L~~~~~~~~~~~~~~~~ 551 (835)
T TIGR01647 472 KGRWHFLGLLPLFDPPRHDTKETIERARELGVEVKMVTGDHLAIAKETARRLGLGTNIYNADVLLKKDNRDKLPSGAEED 551 (835)
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 87358887200278369873899999987697698970026787766532157987534741004677766566664222
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECCCHHHHHH
Q ss_conf 0000156310521138877532331037766799997892348899848931898-795789985898995698327678
Q gi|254780960|r 206 LTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSDLEALLY 284 (297)
Q Consensus 206 ~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~dl~~~l~ 284 (297)
....+....-+++.-||+|.++++.||..++.|.|+|||+||+|+||.||+|||+ ||+|++|.+||+|+..+.|+.+.-
T Consensus 552 ~~E~ve~aDGFA~VFPEHKY~IVe~LQ~~gH~vgMTGDGVNDAPALKkAD~GIAV~GATDAARsAADIVLT~PGLSvIv~ 631 (835)
T TIGR01647 552 LGELVESADGFAEVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVAGATDAARSAADIVLTEPGLSVIVE 631 (835)
T ss_pred HHHHEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 01111105883026740224655776138837983487867604540278331147711588863125650462487788
Q ss_pred HCCCCHHHH
Q ss_conf 709888883
Q gi|254780960|r 285 IQGYKKDEI 293 (297)
Q Consensus 285 ~~g~~~~~~ 293 (297)
++--||+=|
T Consensus 632 Ai~~SR~IF 640 (835)
T TIGR01647 632 AILESRKIF 640 (835)
T ss_pred HHHHHHHHH
T ss_conf 999976874
No 12
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.95 E-value=1.6e-28 Score=193.38 Aligned_cols=153 Identities=18% Similarity=0.140 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHH---HHCC-CCHHHCCCCCCCCC
Q ss_conf 0045689887421134543389999998419869998167234223226550864134---3101-00000000001563
Q gi|254780960|r 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYY---ANRF-IEKDDRLTGQVMEP 213 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~---a~~~-~~~~~~~~~~~~~~ 213 (297)
+...++.+.+...||+||+++++++.|+++|++++|+|||++.++.+||+++||+.-. +..+ ...+..+.......
T Consensus 534 e~dl~flGlv~~~DPpR~e~~~aI~~l~~aGI~V~MITGD~~~TA~aIA~~lGI~~~~v~tG~el~~lsd~el~~~~~~~ 613 (900)
T PRK10517 534 ESDLILEGYIAFLDPPKETTAPALKALKASGITVKILTGDSELVAAKVCHEVGLDAGEVVIGSDIETLSDDELANLAERT 613 (900)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHC
T ss_conf 66747999997307897109999999997799389989999899999999819995444022534409999999998647
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECCCHHHHHHHCCCCH
Q ss_conf 10521138877532331037766799997892348899848931898-795789985898995698327678709888
Q gi|254780960|r 214 IIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSDLEALLYIQGYKK 290 (297)
Q Consensus 214 ~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~dl~~~l~~~g~~~ 290 (297)
.++++..|++|.++++.++..++.|+|+|||+||+|+||.||+|||| ++.+.+||+||+++..+||..+....-.-|
T Consensus 614 ~VfAR~sPe~K~rIV~aLq~~G~vVAmtGDGVNDAPALk~ADVGIAMgsGTDVAKeAADIVLlDDnf~tIv~aV~eGR 691 (900)
T PRK10517 614 TLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVDGAVDIAREAADIILLEKSLMVLEEGVIEGR 691 (900)
T ss_pred CEEEEECHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCEEEEECCCCHHHHHHCCEEEECCCHHHHHHHHHHHH
T ss_conf 789751899999999999977997999738855678885388657746600999984288994297489999999989
No 13
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC; InterPro: IPR001757 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the several classes of P-type ATPases, including those that transport K^+ (3.6.3.12 from EC), Mg^2+ (3.6.3.2 from EC), Cd^2+ (3.6.3.3 from EC), Cu ^2+ (3.6.3.4 from EC), Zn^2+ (3.6.3.5 from EC), Na^+ (3.6.3.7 from EC), Ca^2+ (3.6.3.8 from EC), Na^+/K^+ (3.6.3.9 from EC), and H^+/K^+ (3.6.3.10 from EC). These P-ATPases are found in both prokaryotes and eukaryotes. More information about this protein can be found at Protein of the Month: ATP Synthases . ; GO: 0005524 ATP binding, 0015662 ATPase activity coupled to transmembrane movement of ions phosphorylative mechanism, 0006810 transport, 0016020 membrane.
Probab=99.95 E-value=1.1e-28 Score=194.36 Aligned_cols=228 Identities=16% Similarity=0.156 Sum_probs=165.0
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEE
Q ss_conf 99845888768999999999860788835731880499982688894899999998402168634621455553444872
Q gi|254780960|r 6 TLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSIIADKPIDLIIHRHENRRKNLLIA 85 (297)
Q Consensus 6 TLi~~~~~~~l~~~~~~~i~~~~~~~~~~~La~~~A~e~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~l~~~ 85 (297)
+.||.+|++|||....+.- ... ........++...++.+.... .++........++...++-
T Consensus 212 ~~i~sDKTGTLT~n~m~~~-~~~----------------~~~~~~~~~P~e~Alv~~a~~-~~~~~~F~s~~krm~~i~~ 273 (478)
T TIGR01494 212 DYICSDKTGTLTENKMTFK-KVY----------------IGGEYQAGSPDEKALVKFAKK-ILDVLPFTSERKRMSVIVR 273 (478)
T ss_pred CEEEECCCCCCCCCCEEEE-EEE----------------ECCCCCCCCHHHHHHHHHHHH-HCCEECCCCCEEEEEEEEE
T ss_conf 2799857753307862799-987----------------246232477457999986544-3112203554047899998
Q ss_pred CCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 27502652452002788741223277888765202441001234556876420045689887421134543389999998
Q gi|254780960|r 86 DMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMK 165 (297)
Q Consensus 86 d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 165 (297)
+-++.+..+..--.........+++.....+. ...+.-.....+.+.....||+++++++.++.|+
T Consensus 274 ~~~~~~~KGa~~~~~~~~~~~~~~~~~~~~~G--------------~R~l~~a~~~~~lG~~~~~D~lr~~~~~~i~~L~ 339 (478)
T TIGR01494 274 DPDGKYVKGAPEVILERCSDTEEHLEELASEG--------------LRTLAVAYKEELLGLTAIEDPLREDVKETIEELK 339 (478)
T ss_pred CCCCEEECCCHHHHHHHHHHHHHHHHHHHHCC--------------CEEEEEEEECEEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 58965871834678998888999988763178--------------7089999806078999973457772689999998
Q ss_pred HCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 41986999816723422322655086413431010000000000156310521138877532331037766799997892
Q gi|254780960|r 166 QNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGN 245 (297)
Q Consensus 166 ~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ 245 (297)
++|++++|+|||+..++.+||+++|+ ..+.+|++|.++++.++..++.|+|+|||.
T Consensus 340 ~agi~v~mlTGD~~~tA~~ia~~~g~------------------------~aR~~P~qK~~~V~~~~~~g~~V~m~GDG~ 395 (478)
T TIGR01494 340 RAGIKVWMLTGDNVETAIAIAKECGL------------------------FARVSPEQKAEIVELLQKRGAIVAMIGDGA 395 (478)
T ss_pred HCCCEEEEEECCCHHHHHHHHHHCCC------------------------EECCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 65998999957987999999985242------------------------012884899999999986699899980883
Q ss_pred CHHHHHHHCCCEEEECCCHHHHHHCCEEEECCCHHHHHHHCCCCHHHH
Q ss_conf 348899848931898795789985898995698327678709888883
Q gi|254780960|r 246 NDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEALLYIQGYKKDEI 293 (297)
Q Consensus 246 ND~pmL~~AgvGVA~~a~~~v~~~Ad~~~~~~dl~~~l~~~g~~~~~~ 293 (297)
||+||||+||+||||+| +++||+.+...|+..+.-++=..|.-|
T Consensus 396 ND~~AL~~AdVGia~~A----~~a~D~~l~~~~~~~~~~~~~~GR~~~ 439 (478)
T TIGR01494 396 NDAPALKAADVGIAIGA----KAAADIVLTDDNLSLIVLLLVHGRWTY 439 (478)
T ss_pred CCHHHHHHCCCCEEHHH----HHHCCHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 32788962165333137----876013441688037999999999988
No 14
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.95 E-value=9.3e-29 Score=194.78 Aligned_cols=128 Identities=22% Similarity=0.276 Sum_probs=115.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 88742113454338999999841986999816723422322655086413431010000000000156310521138877
Q gi|254780960|r 145 SLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQIL 224 (297)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 224 (297)
+.+...|++||++++.++.|++.|++++|+|||++.+++.+|+++||++++++ ..|+.|
T Consensus 643 g~i~l~D~~R~~a~~~I~~L~~~Gi~v~mlTGD~~~tA~~iA~~lGI~~v~a~---------------------~~PedK 701 (834)
T PRK10671 643 ALLAVRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIAG---------------------VLPDGK 701 (834)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCHHHHHC---------------------CCHHHH
T ss_conf 99997067753899999999987996999899985899999998394752025---------------------988999
Q ss_pred HHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECCCHHHHHHHCCCCHHHH
Q ss_conf 532331037766799997892348899848931898-795789985898995698327678709888883
Q gi|254780960|r 225 LEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSDLEALLYIQGYKKDEI 293 (297)
Q Consensus 225 ~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~dl~~~l~~~g~~~~~~ 293 (297)
.+++++++..++.|+|+|||+||+|+|++||+|||| ++.+..+++||+++..+||..+++++.++++.+
T Consensus 702 ~~~V~~Lq~~G~~VaMvGDGiNDApALa~ADVGIAmg~GtdvA~eaADivLl~~~L~~i~~ai~lsr~t~ 771 (834)
T PRK10671 702 ADAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGSDVAIETAAITLMRHSLMGVADALAISRATL 771 (834)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHHCCEEEECCCCHHHHHHHCCEEEECCCHHHHHHHHHHHHHHH
T ss_conf 9999999978997999889717589896489778727760999985699997898899999999999999
No 15
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=99.95 E-value=2.3e-27 Score=186.27 Aligned_cols=127 Identities=24% Similarity=0.280 Sum_probs=112.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 89887421134543389999998419869998167234223226550864134310100000000001563105211388
Q gi|254780960|r 143 IDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQ 222 (297)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~ 222 (297)
+.+.+...|++||++++.++.|++.|++++|+|||++.+++.+|+++|+++++ ++.+|+
T Consensus 441 ~lG~i~L~D~iRp~a~eaI~~Lr~~GI~vvMITGDn~~TA~aIA~elGIDd~~---------------------A~~tPe 499 (684)
T PRK01122 441 VLGVIYLKDIVKPGIKERFAQLRKMGIKTVMITGDNPLTAAAIAAEAGVDDFL---------------------AEATPE 499 (684)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCHHHH---------------------HCCCHH
T ss_conf 99999726889754999999999879929999898969999999984956556---------------------579999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEEC-CCHHHHHHCCEEEECCCHHHHHHHCCCCH
Q ss_conf 775323310377667999978923488998489318987-95789985898995698327678709888
Q gi|254780960|r 223 ILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH-AKPALAKQAKIRIDHSDLEALLYIQGYKK 290 (297)
Q Consensus 223 ~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~-a~~~v~~~Ad~~~~~~dl~~~l~~~g~~~ 290 (297)
.|.+++++++..++.|+|+|||.||+|+|++||+||||| +.+..||+||+++..+|+..++-..-+-|
T Consensus 500 dKl~iVk~LQ~~G~vVAMtGDGvNDAPALa~ADVGIAMgsGTdvAkEAADmVLLDdnf~~iv~aV~~Gr 568 (684)
T PRK01122 500 DKLALIRQEQAEGRLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVEIGK 568 (684)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCEEEEECCCCHHHHHHHCEEEECCCHHHHHHHHHHHH
T ss_conf 999999999848597999628821588884099778737756899986089994598488999999999
No 16
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.9e-27 Score=184.81 Aligned_cols=130 Identities=23% Similarity=0.291 Sum_probs=113.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 89887421134543389999998419869998167234223226550864134310100000000001563105211388
Q gi|254780960|r 143 IDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQ 222 (297)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~ 222 (297)
..+.+...|++||+++++++.||+.|++++|+|||+..+++.+|+++||++++++.+ |+
T Consensus 528 ~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~A~ll---------------------Pe 586 (713)
T COG2217 528 LVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAELL---------------------PE 586 (713)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCHHHEECCCC---------------------CH
T ss_conf 999999707888349999999998799399985999899999999739262350799---------------------18
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEEC-CCHHHHHHCCEEEECCCHHHHHHHCCCCHHHH
Q ss_conf 775323310377667999978923488998489318987-95789985898995698327678709888883
Q gi|254780960|r 223 ILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH-AKPALAKQAKIRIDHSDLEALLYIQGYKKDEI 293 (297)
Q Consensus 223 ~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~-a~~~v~~~Ad~~~~~~dl~~~l~~~g~~~~~~ 293 (297)
.|.+.+++++..++.|+|||||+||+|+|+.||+||||+ +.+..+|+||+++.++||+.++.++.++++..
T Consensus 587 dK~~~V~~l~~~g~~VamVGDGINDAPALA~AdVGIAmG~GtDvA~eaADvvL~~~dL~~v~~ai~lSr~t~ 658 (713)
T COG2217 587 DKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEAADVVLMRDDLSAVPEAIDLSRATR 658 (713)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCEEEEECCCCHHHHHHCCEEEECCCHHHHHHHHHHHHHHH
T ss_conf 899999999965997999828831578885178436536861878975899996698888999999999999
No 17
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase; InterPro: IPR006416 This group encompasses the copper and cadmium-type heavy metal transporting P-type ATPases as well as those which cannot be assigned to one or other of the groups. ; GO: 0015662 ATPase activity coupled to transmembrane movement of ions phosphorylative mechanism, 0030001 metal ion transport, 0016021 integral to membrane.
Probab=99.94 E-value=2.5e-27 Score=185.98 Aligned_cols=135 Identities=22% Similarity=0.262 Sum_probs=112.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHHHHCC--CHHHHHCCCCHHHCCCCCCCCCCCCH
Q ss_conf 689887421134543389999998419--86999816723422322655086--41343101000000000015631052
Q gi|254780960|r 142 IIDSLLEKKITYNPGGYELVHTMKQNG--ASTLLVTGGFSIFARFIAQHLGF--DQYYANRFIEKDDRLTGQVMEPIIDG 217 (297)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~l~~~g--~~v~iisg~~~~~~~~ia~~lgi--~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (297)
.+.+.+...|++||++++.++.||+.+ .+++|+|||+...++.+|+++|| ++++++ +.+
T Consensus 440 ~~~g~~~l~D~~R~~a~~~i~~Lk~~~g~~~~~mLTGD~~~~A~~~A~~lGI~~~~v~Ae-----------------l~P 502 (639)
T TIGR01525 440 ELLGVIALRDQLRPEAKEAIAALKRKGGIIEVVMLTGDNRAAAEAVAAELGIEIDEVHAE-----------------LLP 502 (639)
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEC-----------------CCH
T ss_conf 399999960557854799999999743873477621888899999999829850000444-----------------784
Q ss_pred HHHHHHHHHHHHHH--CCCCCEEEEEECCCCHHHHHHHCCCEEEEC-C-CHHHHHHCCEEEECC-CHHHHHHHCCCCHHH
Q ss_conf 11388775323310--377667999978923488998489318987-9-578998589899569-832767870988888
Q gi|254780960|r 218 TAKSQILLEAIQKL--QINPEDTIAVGDGNNDLDMLRVAGYGVAFH-A-KPALAKQAKIRIDHS-DLEALLYIQGYKKDE 292 (297)
Q Consensus 218 ~~k~~~~~~l~~~~--~~~~~~v~avGDg~ND~pmL~~AgvGVA~~-a-~~~v~~~Ad~~~~~~-dl~~~l~~~g~~~~~ 292 (297)
+.|.+.++++.++. +...+.|+|||||+||+|+|+.||+||||| . .+...++||+++.++ ||+.|++++.++++.
T Consensus 503 ~dK~~~v~~l~~~~~S~~~~~~v~MVGDGiNDAPALA~AdvGiAmG~~G~dvA~e~AD~Vl~~d~~L~~~~~~i~lsr~t 582 (639)
T TIGR01525 503 EDKLAIVKELQAERYSEEGGHVVAMVGDGINDAPALAAADVGIAMGASGSDVAIEAADIVLLNDNDLSSLPTAIDLSRKT 582 (639)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88999999998520412258658998288332799865546535256168999986068566489820089999999998
Q ss_pred H
Q ss_conf 3
Q gi|254780960|r 293 I 293 (297)
Q Consensus 293 ~ 293 (297)
.
T Consensus 583 ~ 583 (639)
T TIGR01525 583 R 583 (639)
T ss_pred H
T ss_conf 8
No 18
>KOG0202 consensus
Probab=99.94 E-value=5.4e-27 Score=183.97 Aligned_cols=150 Identities=19% Similarity=0.203 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHH----------HCCCCHHHCCC
Q ss_conf 00456898874211345433899999984198699981672342232265508641343----------10100000000
Q gi|254780960|r 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYA----------NRFIEKDDRLT 207 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a----------~~~~~~~~~~~ 207 (297)
+...++.++++..||+|++++++++.|++.|++|+|||||+..++.+|++++|+...-- ..-...+....
T Consensus 570 E~~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~ 649 (972)
T KOG0202 570 ESDLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELD 649 (972)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCHHHHH
T ss_conf 25438998742468996568999999997397799983898789999999839876774211232234444049989998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEEC--CCHHHHHHCCEEEECCCHHHHHHH
Q ss_conf 001563105211388775323310377667999978923488998489318987--957899858989956983276787
Q gi|254780960|r 208 GQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH--AKPALAKQAKIRIDHSDLEALLYI 285 (297)
Q Consensus 208 ~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~--a~~~v~~~Ad~~~~~~dl~~~l~~ 285 (297)
.......++.+..|+++.++++.|+..++.|+|+|||+||+|+||.|++||||| +.++.|+++|.++...|+..++-+
T Consensus 650 ~~~~~~~vFaR~~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~~GTdVaKeAsDMVL~DDnFstIvaA 729 (972)
T KOG0202 650 DAVRRVLVFARAEPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGISGTDVAKEASDMVLADDNFSTIVAA 729 (972)
T ss_pred HHHHCCEEEEECCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHCCCCEEECCCCCHHHHHHHHCEEECCCHHHHHHH
T ss_conf 77642359996383658999999986498898327986650666320235220677317667554208734858999999
Q ss_pred CC
Q ss_conf 09
Q gi|254780960|r 286 QG 287 (297)
Q Consensus 286 ~g 287 (297)
..
T Consensus 730 VE 731 (972)
T KOG0202 730 VE 731 (972)
T ss_pred HH
T ss_conf 99
No 19
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.93 E-value=4.9e-26 Score=178.09 Aligned_cols=128 Identities=22% Similarity=0.294 Sum_probs=108.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 89887421134543389999998419869998167234223226550864134310100000000001563105211388
Q gi|254780960|r 143 IDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQ 222 (297)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~ 222 (297)
+.+.+...|++|++++++++.|++.|++++|+|||++.+++.+|+++||+ +++ ...|+
T Consensus 557 ~~g~i~l~D~lR~~a~~aI~~Lk~~Gi~v~mlTGD~~~ta~~iA~~lGId-~~a---------------------~l~Pe 614 (739)
T PRK11033 557 VLGLIALQDTLRADAAQAISELKALGIKGVMLTGDNPRAAAAIAGELGLD-FKA---------------------GLLPE 614 (739)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCC-EEC---------------------CCCHH
T ss_conf 99999960688655999999999869907997899779999999982998-103---------------------76969
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECCCHHHHHHHCCCCHHHH
Q ss_conf 77532331037766799997892348899848931898-795789985898995698327678709888883
Q gi|254780960|r 223 ILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSDLEALLYIQGYKKDEI 293 (297)
Q Consensus 223 ~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~dl~~~l~~~g~~~~~~ 293 (297)
.|.+++++++.. +.|+|+|||+||+|+|+.||+|||| ++.+..+++||+++.++||..+..++-++++.+
T Consensus 615 dK~~~V~~Lq~~-~~VaMvGDGINDAPAL~~ADVGIAmg~GtDvA~eaADiVLl~~~L~~i~~ai~lsr~t~ 685 (739)
T PRK11033 615 DKVKAVTALNQH-APLAMVGDGINDAPAMKAASIGIAMGSGTDVALETADAALTHNRLRGLAQMIELSRATH 685 (739)
T ss_pred HHHHHHHHHHCC-CCEEEECCCHHHHHHHHHCCEEEECCCHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHH
T ss_conf 999999998589-94899879737699998689888737507999985899996899899999999999999
No 20
>TIGR01512 ATPase-IB2_Cd cadmium-translocating P-type ATPase; InterPro: IPR006404 These sequences describe the P-type ATPase primarily responsible for translocating cadmium ions (and other closely-related divalent heavy metals such as cobalt, mercury, lead and zinc) across biological membranes. These transporters are found in prokaryotes and plants. Experimentally characterised members include P37617 from SWISSPROT from Escherichia coli, Q10866 from SWISSPROT from Mycobacterium tuberculosis and Q59998 from SWISSPROT from Synechocystis PCC6803. The cadmium P-type ATPases have been characterised as Type IB based on a phylogenetic analysis which combines the copper-translocating ATPases with the cadmium-translocating species . This family and that describing the copper-ATPases (IPR006403 from INTERPRO) are well separated, and thus the copper-ATPases can be typed as IB1 and the cadmium-ATPases as IB2. ; GO: 0005524 ATP binding, 0016818 hydrolase activity acting on acid anhydrides in phosphorus-containing anhydrides, 0046872 metal ion binding, 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0016020 membrane.
Probab=99.93 E-value=5.2e-27 Score=184.07 Aligned_cols=188 Identities=21% Similarity=0.206 Sum_probs=129.4
Q ss_pred CCCCEEEECCCEEEEECCCC-------HHHHHHHHCCCHHHHHHHHHHH-----CCCCCHHHHH-HHHH------HHHHH
Q ss_conf 53444872275026524520-------0278874122327788876520-----2441001234-5568------76420
Q gi|254780960|r 78 RRKNLLIADMDSTMIEQECI-------DELADLIGIKEKVSLITARAMN-----GEIPFQDSLR-ERIS------LFKGT 138 (297)
Q Consensus 78 ~~~~l~~~d~d~tli~~~~l-------~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~------~~~~~ 138 (297)
-..+.++||=.|||+.++.. ..+.-....+.+......++.. .+.-+..... +.+. ..--.
T Consensus 232 ~~~~tv~fDKTGTLT~G~~~v~~~~~~~~l~laaa~E~~S~HPlA~AIv~~~e~pG~G~~a~~~g~~v~~G~~~t~~~v~ 311 (494)
T TIGR01512 232 AKVKTVAFDKTGTLTTGKPKVVDVEPLELLRLAAAAEQQSSHPLARAIVAAEEVPGEGVKAVVDGEEVRIGNKRTLVLVA 311 (494)
T ss_pred HCCCEEEECCCCCEECCEEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCEEEEE
T ss_conf 08547998077400123069874405679999999731066868999997420477744899957799997376589999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCH
Q ss_conf 045689887421134543389999998419-8699981672342232265508641343101000000000015631052
Q gi|254780960|r 139 STKIIDSLLEKKITYNPGGYELVHTMKQNG-ASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDG 217 (297)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g-~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (297)
.+..+.+.+...|++|+++++.++.||+.| .+++|+|||+...++.+|+++| +++++
T Consensus 312 ~~~~~~G~i~l~D~~R~~a~~ai~~L~~~G~~~~~mLTGD~~~~A~~vA~~lG-d~v~A--------------------- 369 (494)
T TIGR01512 312 VDGKLIGVILLSDELRPEAAEAIAELKALGVKKIVMLTGDRRAVAEAVAAELG-DEVHA--------------------- 369 (494)
T ss_pred ECCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHCC-CEEEE---------------------
T ss_conf 85849999997335662279999999861630001014884899999998739-10252---------------------
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEEC--CCHHHHHHCCEEEECCCHHHHHHHCCCCHH
Q ss_conf 11388775323310377667999978923488998489318987--957899858989956983276787098888
Q gi|254780960|r 218 TAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH--AKPALAKQAKIRIDHSDLEALLYIQGYKKD 291 (297)
Q Consensus 218 ~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~--a~~~v~~~Ad~~~~~~dl~~~l~~~g~~~~ 291 (297)
+.+|+.|.+.+++++ +++|||||+||+|+|+.||+||||| +.+.+.|.||+++.++||+.+.+...++++
T Consensus 370 eL~PEDK~~~v~~l~----~~~mVGDGiNDAPALA~AdvGiAMG~~Gsd~A~e~AD~vl~~d~l~~l~~~~~lar~ 441 (494)
T TIGR01512 370 ELLPEDKLEIVKELQ----KVAMVGDGINDAPALAAADVGIAMGASGSDVALETADIVLLDDDLSRLPEAIRLARR 441 (494)
T ss_pred CCCHHHHHHHHHHHH----HHEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCEEEECCCHHHHHHHHHHHHH
T ss_conf 288078999998750----105644870048998320031002676889999851333454782127999999999
No 21
>KOG0207 consensus
Probab=99.91 E-value=1e-24 Score=169.98 Aligned_cols=128 Identities=26% Similarity=0.341 Sum_probs=109.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 88742113454338999999841986999816723422322655086413431010000000000156310521138877
Q gi|254780960|r 145 SLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQIL 224 (297)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 224 (297)
+.+...|++||++..++..||+.|++++|+|||+..++.++|+++|+++++++. +|+.+
T Consensus 716 gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~~V~aev---------------------~P~~K 774 (951)
T KOG0207 716 GVFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGIDNVYAEV---------------------LPEQK 774 (951)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCEEEECC---------------------CCHHH
T ss_conf 999834445532799999999658338998478789999999862810477435---------------------83336
Q ss_pred HHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEECC-CHHHHHHCCEEEECCCHHHHHHHCCCCHHHH
Q ss_conf 53233103776679999789234889984893189879-5789985898995698327678709888883
Q gi|254780960|r 225 LEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHA-KPALAKQAKIRIDHSDLEALLYIQGYKKDEI 293 (297)
Q Consensus 225 ~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~a-~~~v~~~Ad~~~~~~dl~~~l~~~g~~~~~~ 293 (297)
.++++.++..++.|+|+|||.||+|+|.+|++||||++ .+.+.|+||+++..+||++++...-.||+.+
T Consensus 775 ~~~Ik~lq~~~~~VaMVGDGINDaPALA~AdVGIaig~gs~vAieaADIVLmrn~L~~v~~ai~LSrkt~ 844 (951)
T KOG0207 775 AEKIKEIQKNGGPVAMVGDGINDAPALAQADVGIAIGAGSDVAIEAADIVLMRNDLRDVPFAIDLSRKTV 844 (951)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCEEECCCCHHHHHHCCEEEECCCHHHHHHHHHHHHHHH
T ss_conf 8999999854883799707877637788522253322661777750778997350341588999988777
No 22
>TIGR01523 ATPase-IID_K-Na potassium/sodium efflux P-type ATPase, fungal-type; InterPro: IPR006414 Initially described as a calcium efflux ATPase , more recent work has shown that the Schizosaccharomyces pombe CTA3 gene is in fact a potassium ion efflux pump . These sequences form the clade which represents the fungal P-type ATPases which are responsible for potassium and sodium efflux. The degree to which these pumps show preference for sodium or potassium varies. This group of ATPases has been classified by phylogentic analysis as type IID . ; GO: 0015662 ATPase activity coupled to transmembrane movement of ions phosphorylative mechanism, 0006812 cation transport, 0016021 integral to membrane.
Probab=99.91 E-value=8.4e-25 Score=170.57 Aligned_cols=266 Identities=15% Similarity=0.198 Sum_probs=171.4
Q ss_pred CCHHHHHHHHHHH-CCCCCEECCCCEEEEEEECCC---CCHH-HHHHHHHHHHHHCCCCEEECCCC-------CCCCCEE
Q ss_conf 8999999999860-788835731880499982688---8948-99999998402168634621455-------5534448
Q gi|254780960|r 16 LNISLVKQIMQIV-NSSIFYWLADSIACDIILPLE---GMID-HHRSKILSIIADKPIDLIIHRHE-------NRRKNLL 83 (297)
Q Consensus 16 l~~~~~~~i~~~~-~~~~~~~La~~~A~e~~~~~~---~~~~-~~~~~l~~~~~~~~~d~~~~~~~-------~~~~~l~ 83 (297)
|....+..+.... +.....|.+.|.++||.++.- -+.- .....--++.++.|+|..+.+.. +....++
T Consensus 436 L~T~~L~N~~TV~k~~~T~~W~~~G~PTEIA~~VF~~~~~~G~~~~~~~N~~~~EyPFDS~~KRM~~~Y~~~~~~tY~~Y 515 (1001)
T TIGR01523 436 LKTAALANLATVFKDDETDEWKVKGDPTEIALQVFAKKFDLGKKDLLKSNEFVAEYPFDSEVKRMAVVYEDNQNETYTVY 515 (1001)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCEEEEEEEEECCCCCEEEEE
T ss_conf 98887656654215666661255058504577789876225513444105503316888750466777763788767886
Q ss_pred EECC-CEEE-----EECCCCHHHHHH---------HHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7227-5026-----524520027887---------412232778887652024410012345568764200456898874
Q gi|254780960|r 84 IADM-DSTM-----IEQECIDELADL---------IGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLE 148 (297)
Q Consensus 84 ~~d~-d~tl-----i~~~~l~~~a~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (297)
..+. ++.+ .++.++.+...+ ..-+.++-.+..+.. .+........|.++ ++...+.++++
T Consensus 516 ~KGA~E~I~~~CS~~~G~~L~~~D~E~I~~~~~~L~~EGLRVL~lA~K~~-~K~~~~~T~~R~~A----ES~L~F~~L~G 590 (1001)
T TIGR01523 516 AKGAVERILERCSSSYGSTLEDPDVELIIKNVESLAAEGLRVLALASKVI-DKDDVNITLNRDVA----ESDLVFLSLVG 590 (1001)
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHCCCCCCCCHH----HHCEEEEEEEE
T ss_conf 04057888865056788867654289999998886631255455664200-02120235653010----00315676665
Q ss_pred HHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCH--HHHHCCCC--------------HHHCCCCCCCC
Q ss_conf 211345433899999984198699981672342232265508641--34310100--------------00000000156
Q gi|254780960|r 149 KKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ--YYANRFIE--------------KDDRLTGQVME 212 (297)
Q Consensus 149 ~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~--~~a~~~~~--------------~~~~~~~~~~~ 212 (297)
..||+|.+.+-+++.|+++|++|+|+||||..++++||++.||-. .+...-+. .+...+.-..-
T Consensus 591 IYDPPR~E~~GAV~~~H~AGI~VHMLTGD~~~TAKAIA~EVGI~P~nl~~~~~~~~~~MVMTGSQFD~LS~EEVD~L~~L 670 (1001)
T TIGR01523 591 IYDPPRTESKGAVKKFHRAGIRVHMLTGDFVETAKAIAREVGILPTNLISDRDEIVDSMVMTGSQFDALSDEEVDDLKVL 670 (1001)
T ss_pred ECCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 02888875244899885479668874389657889987423678850010121000001312431356660000145633
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE--CCCHHHHHHCCEEEECCCHHHHHHHC
Q ss_conf 310521138877532331037766799997892348899848931898--79578998589899569832767870
Q gi|254780960|r 213 PIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF--HAKPALAKQAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 213 ~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~--~a~~~v~~~Ad~~~~~~dl~~~l~~~ 286 (297)
+.+-+++.|+.+.++++.|+....-|.|+|||+||.|-||.|.+|||| |+.++.|++.|+++...++.+++-..
T Consensus 671 ~LVIARC~PQTKV~MIEALHRRK~F~~MTGDGVNDSPSLK~ANVGIAMG~NGSDV~K~ASDIVL~DDNF~SI~NA~ 746 (1001)
T TIGR01523 671 PLVIARCAPQTKVKMIEALHRRKKFVAMTGDGVNDSPSLKQANVGIAMGINGSDVAKDASDIVLSDDNFASILNAV 746 (1001)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCCCEECCCCCCCHHHCCCCCEECCCCHHHHHHHH
T ss_conf 0024317886326776654202322640178737873221111101217885401020055033255057887655
No 23
>TIGR01497 kdpB K+-transporting ATPase, B subunit; InterPro: IPR006391 These sequences describe the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In Escherichia coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit . The function of KdpC is unclear, although it has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex . The potassium P-type ATPases have been characterised as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB) . Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics . ; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016021 integral to membrane.
Probab=99.90 E-value=8e-25 Score=170.70 Aligned_cols=120 Identities=28% Similarity=0.316 Sum_probs=105.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHH
Q ss_conf 68988742113454338999999841986999816723422322655086413431010000000000156310521138
Q gi|254780960|r 142 IIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKS 221 (297)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~ 221 (297)
..++.+..+|.+++|.+|-+++||+.|+|++|+|||++.++..||++-|.|+..| +++|
T Consensus 436 ~iyGVIyLKDiVK~Gi~ERF~qLR~~GikTiM~TGDNrlTAa~IA~EAGVDdFiA---------------------Ea~P 494 (675)
T TIGR01497 436 KIYGVIYLKDIVKSGIKERFEQLRKMGIKTIMLTGDNRLTAAVIAKEAGVDDFIA---------------------EATP 494 (675)
T ss_pred EEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCC---------------------CCCC
T ss_conf 7898898730137860457888722586689972897578999997628885201---------------------5883
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEECC-CHHHHHHCCEEEECCCHHHH
Q ss_conf 87753233103776679999789234889984893189879-57899858989956983276
Q gi|254780960|r 222 QILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHA-KPALAKQAKIRIDHSDLEAL 282 (297)
Q Consensus 222 ~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~a-~~~v~~~Ad~~~~~~dl~~~ 282 (297)
|.+..+.++.|-+++-|+|+|||.||+|+|.+||+|||||. ...+||+|+.+=..+|-+=|
T Consensus 495 EdKi~~I~~eQaeGkLVAMTGDGTNDAPALAQAdVgvAMNsGTqAAKEAaNMVDLDSdPTKl 556 (675)
T TIGR01497 495 EDKIEVIKKEQAEGKLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAANMVDLDSDPTKL 556 (675)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCEE
T ss_conf 67899998751178179774889760467876435545223014888723755478888307
No 24
>TIGR00099 Cof-subfamily Cof-like hydrolase; InterPro: IPR000150 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification . Proteins in this entry are mostly uncharacterised, though they form a distinct subgroup within the HAD superfamily. Members are found almost exclusively in bacteria and many species contain several paralogs, for example Escherichia coli contains a total of six proteins from this entry. Sequence similarities suggest that these enzymes are phosphatases which work on phosphorylated sugars. The YbiV (P75792 from SWISSPROT) protein from E. coli has been experimentally characterised . This enzyme catalyzes the hydrolysis of sugar phosphate to sugar and inorganic phosphate. It has a wide substrate specificity, catalyzing the hydrolysis of ribose-5-phosphate and glucose-6-phosphate most efficiently, but it is not known if these are the real substrates in vivo. The protein appears to be a monomer that contains two domains, an alpha-beta hydrolase domain that forms a Rossman fold, and an alpha-beta domain. The active site is found in a negatively charged cavity found at the interface between the two domains. ; GO: 0016787 hydrolase activity, 0008152 metabolic process.
Probab=99.89 E-value=2.2e-22 Score=155.74 Aligned_cols=251 Identities=19% Similarity=0.155 Sum_probs=170.3
Q ss_pred EEEE-CCCCCCCCHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCC--EEECCCCCCCCCE
Q ss_conf 9984-588876899999999986078883573188049998268889489999999840216863--4621455553444
Q gi|254780960|r 6 TLIT-HRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSIIADKPID--LIIHRHENRRKNL 82 (297)
Q Consensus 6 TLi~-~~~~~~l~~~~~~~i~~~~~~~~~~~La~~~A~e~~~~~~~~~~~~~~~l~~~~~~~~~d--~~~~~~~~~~~~l 82 (297)
||+. +.. .+++....++..+...|....|||||.+. + +...+.+...+.+.+ ..+...+. .
T Consensus 9 TLL~~~~~--~i~~~~~~al~~l~~~G~~~~laTGR~~~------g----~~~~~~~~~~~~~~~~~~~i~~nGg----~ 72 (270)
T TIGR00099 9 TLLNKDDK--EISPSTKEALAKLREKGIKVVLATGRPLA------G----VYKELKEILKELGLDTDPYISANGG----A 72 (270)
T ss_pred EEECCCCC--CCCHHHHHHHHHHHHCCCEEEEEECCCCC------C----HHHHHHHHHHHHCCCCCEEEEECCC----E
T ss_conf 03559987--51888999999999669889998188643------4----7899999888506785568761784----8
Q ss_pred EEECCCE-EEEECCCCHHHHHHHHCCCHHHHHHHHHHHCC--CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 8722750-26524520027887412232778887652024--41001234-55687642004568988742113454338
Q gi|254780960|r 83 LIADMDS-TMIEQECIDELADLIGIKEKVSLITARAMNGE--IPFQDSLR-ERISLFKGTSTKIIDSLLEKKITYNPGGY 158 (297)
Q Consensus 83 ~~~d~d~-tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (297)
++.+..+ ..+....++ ...+..+........ +.+.-... ..+...+...............+..+...
T Consensus 73 ~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (270)
T TIGR00099 73 VIDEGGGNEILYKKPLD--------LDLVEELLNFLKKHGQELDVILYSDSDSIYALKNDPEYFTIFKKKLAEPKLEVVK 144 (270)
T ss_pred EEEECCCCEEEEECCCC--------HHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCEEEHHHHHCCCCCCCCCC
T ss_conf 99846870056302478--------8899999999973489257999817762565237875241123420002222345
Q ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHH-HCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 999999841986999816723422322655086413431010000-0000001563105211388775323310377667
Q gi|254780960|r 159 ELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKD-DRLTGQVMEPIIDGTAKSQILLEAIQKLQINPED 237 (297)
Q Consensus 159 ~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~ 237 (297)
. .++....+..++..++..+..-..+.-++ ......+.. ..+.....+....+.+|+.+++.+.++++++.++
T Consensus 145 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~s~~~~~ei~~~g~~Kg~a~~~l~~~~g~~~~~ 218 (270)
T TIGR00099 145 N---LLEDDILKILLLFLDPEDLDKLIEALNKI---LEFEENLSVNVSSGEDSIEITAKGVSKGSALQSLAEKLGISLED 218 (270)
T ss_pred C---CCCCCCEEEEEEECCHHHHHHHHHHHHHH---HHHCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 5---35566058999865866777999998755---43205236988524531367228997689999999972878103
Q ss_pred EEEEECCCCHHHHHHHCCCE-EEE-CCCHHHHHHCCEEEEC-CCHHHHHHHC
Q ss_conf 99997892348899848931-898-7957899858989956-9832767870
Q gi|254780960|r 238 TIAVGDGNNDLDMLRVAGYG-VAF-HAKPALAKQAKIRIDH-SDLEALLYIQ 286 (297)
Q Consensus 238 v~avGDg~ND~pmL~~AgvG-VA~-~a~~~v~~~Ad~~~~~-~dl~~~l~~~ 286 (297)
|+|||||.||+|||+.||+| ||| ||.|.+|+.|++++.+ ++=.+|..+|
T Consensus 219 ~~afGD~~NDi~Ml~~ag~g~vAM~nA~~~~K~~A~~v~~~~n~~~Gv~~~l 270 (270)
T TIGR00099 219 VIAFGDGENDIEMLEAAGYGIVAMGNADEELKALADYVTDSGNDEDGVALAL 270 (270)
T ss_pred EEEEECCCCCHHHHHHHCCCEEEECCCCHHHHHHCCCCCCCCCCCCHHEECC
T ss_conf 8998088421789987081248736884888974430006887631120029
No 25
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase; InterPro: IPR006415 This group describes the magnesium translocating P-type ATPase found in a limited number of bacterial species and best described in Salmonella typhimurium, which contains two isoforms . These transporters are active in low external Mg2+ concentrations and pump the ion into the cytoplasm. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis .; GO: 0015444 magnesium-importing ATPase activity, 0015693 magnesium ion transport, 0016021 integral to membrane.
Probab=99.89 E-value=2.1e-23 Score=161.95 Aligned_cols=267 Identities=16% Similarity=0.183 Sum_probs=187.3
Q ss_pred EEECCCCCCCCHHHHHHHHHHHCCCC--CEECCCCEEEEE--EECCCCCHHHHHHHH---------------HHHHHHCC
Q ss_conf 98458887689999999998607888--357318804999--826888948999999---------------98402168
Q gi|254780960|r 7 LITHRSHPILNISLVKQIMQIVNSSI--FYWLADSIACDI--ILPLEGMIDHHRSKI---------------LSIIADKP 67 (297)
Q Consensus 7 Li~~~~~~~l~~~~~~~i~~~~~~~~--~~~La~~~A~e~--~~~~~~~~~~~~~~l---------------~~~~~~~~ 67 (297)
++|.+++++||.....-....=-+|. .+.|.- | .+ .+++ |...-...++ |....+.|
T Consensus 360 iLCTDKTGTLT~Dki~L~~h~D~sG~~SerVL~~--A-wLNS~~Qt-G~kNvlD~Avl~~~de~~A~~t~~rw~K~dEiP 435 (892)
T TIGR01524 360 ILCTDKTGTLTQDKIVLEKHLDVSGKKSERVLKL--A-WLNSYYQT-GLKNVLDRAVLEKVDESIARSTKARWKKVDEIP 435 (892)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH--H-HHHCCHHH-HHHHHHHHHHHHHCCCHHHHHHCCCCEEECCCC
T ss_conf 2113888874301332211102588734578887--7-75120231-467876799984214101123225745204778
Q ss_pred CCEEECCCCCCCCCEEEECCC---EEEEECCCCHHHHHHHH---CC-----------CHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 634621455553444872275---02652452002788741---22-----------32778887652024410012345
Q gi|254780960|r 68 IDLIIHRHENRRKNLLIADMD---STMIEQECIDELADLIG---IK-----------EKVSLITARAMNGEIPFQDSLRE 130 (297)
Q Consensus 68 ~d~~~~~~~~~~~~l~~~d~d---~tli~~~~l~~~a~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 130 (297)
+|+ ..||.++++.|-. ..+|..-.+.|+-..+. .+ .++...|+..-+.++.+-....+
T Consensus 436 FdF-----~RRR~SVvVe~~~~G~~~licKGAveE~l~VcTh~r~gg~vv~L~e~~~~~l~~~t~~~NrqG~RV~avAtk 510 (892)
T TIGR01524 436 FDF-----ERRRLSVVVEDAAEGVRRLICKGAVEEMLTVCTHVREGGAVVALDESEKERLKDVTEELNRQGLRVVAVATK 510 (892)
T ss_pred CCC-----CCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 875-----443377897306678805331337899987621101188030376257899999998743278578767763
Q ss_pred HHH--------HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCH---HHHHCC
Q ss_conf 568--------764200456898874211345433899999984198699981672342232265508641---343101
Q gi|254780960|r 131 RIS--------LFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ---YYANRF 199 (297)
Q Consensus 131 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~---~~a~~~ 199 (297)
... -..++.+.+..|.+...||+++.+.++++.|++.|+.|+++|||++.++.+|..+.||+. ..+...
T Consensus 511 ~l~~~e~~Pt~~~~DE~~liieG~l~FlDPpKest~~AiaaL~~ngi~VKvLTGDne~VtariC~EVGida~d~l~G~di 590 (892)
T TIGR01524 511 KLDASEADPTYSKEDEEELIIEGYLAFLDPPKESTKKAIAALKKNGIAVKVLTGDNEVVTARICLEVGIDANDVLLGADI 590 (892)
T ss_pred ECCCCCCCCCCCEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCCCCCEEECCCH
T ss_conf 04678888664130777888997764068801017999999985797899961886578732110045576775753234
Q ss_pred -CCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECC
Q ss_conf -0000000000156310521138877532331037766799997892348899848931898-79578998589899569
Q gi|254780960|r 200 -IEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHS 277 (297)
Q Consensus 200 -~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~ 277 (297)
...|..++.......++++-.|-+|.+++..|+..+|.|-+.|||+||+|||+.||+||.+ .|-|.+||++|+++...
T Consensus 591 E~lSD~eLa~e~~k~~~FArLTPmqK~RI~~lLkk~GHtVGFlGDGINDAPALR~ADvGISVD~AaDIakeasdiILLEK 670 (892)
T TIGR01524 591 EELSDEELAAEVEKRAVFARLTPMQKERIVTLLKKEGHTVGFLGDGINDAPALRKADVGISVDSAADIAKEASDIILLEK 670 (892)
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 32267999999873322220487647899999976795698628774652454106754021314546554332333422
Q ss_pred CHHHH
Q ss_conf 83276
Q gi|254780960|r 278 DLEAL 282 (297)
Q Consensus 278 dl~~~ 282 (297)
+|..|
T Consensus 671 sL~VL 675 (892)
T TIGR01524 671 SLMVL 675 (892)
T ss_pred HHHHH
T ss_conf 23544
No 26
>KOG0204 consensus
Probab=99.88 E-value=1.8e-23 Score=162.37 Aligned_cols=152 Identities=17% Similarity=0.145 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCC--------HHHCCCCCC
Q ss_conf 045689887421134543389999998419869998167234223226550864134310100--------000000001
Q gi|254780960|r 139 STKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIE--------KDDRLTGQV 210 (297)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~--------~~~~~~~~~ 210 (297)
...++....+++||+||+++++++.|+++|+.|.|||||+-.++++||.+.||-.--...... .+.....-+
T Consensus 634 ~~lt~laivGIkDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~ 713 (1034)
T KOG0204 634 GGLTLLAIVGIKDPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIW 713 (1034)
T ss_pred CCEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCEECCHHHHHCCHHHHHHHH
T ss_conf 88389999623688898868999999875967999837847889999997563567986203315644213899998642
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEEC--CCHHHHHHCCEEEECCCHHHHHHHCCC
Q ss_conf 563105211388775323310377667999978923488998489318987--957899858989956983276787098
Q gi|254780960|r 211 MEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH--AKPALAKQAKIRIDHSDLEALLYIQGY 288 (297)
Q Consensus 211 ~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~--a~~~v~~~Ad~~~~~~dl~~~l~~~g~ 288 (297)
....+.+++.|..+..+++.+...++.|+.+|||.||+|+|+.||+|.||+ +.+++||++|+++...|+.++.-..-.
T Consensus 714 pkl~VlARSSP~DK~lLVk~L~~~g~VVAVTGDGTNDaPALkeADVGlAMGIaGTeVAKEaSDIIi~DDNFssIVk~v~W 793 (1034)
T KOG0204 714 PKLRVLARSSPNDKHLLVKGLIKQGEVVAVTGDGTNDAPALKEADVGLAMGIAGTEVAKEASDIIILDDNFSSIVKAVKW 793 (1034)
T ss_pred HHHEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCHHCCCCCHHHHHHCCCEEEECCCHHHHHHHHHH
T ss_conf 02315304797107799999986596899946988872334213544101444126556307769974866999999986
Q ss_pred CH
Q ss_conf 88
Q gi|254780960|r 289 KK 290 (297)
Q Consensus 289 ~~ 290 (297)
.|
T Consensus 794 GR 795 (1034)
T KOG0204 794 GR 795 (1034)
T ss_pred HH
T ss_conf 36
No 27
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490; InterPro: IPR006385 This group of sequences belong to the IB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences are all bacterial. The IB subfamily includes the enzyme phosphoserine phosphatase. Due to this relationship, several of these sequences have been annotated as "phosphoserine phosphatase related proteins," or "phosphoserine phosphatase-family enzymes." There is presently no evidence that any of the proteins in this family possess PSPase activity. .
Probab=99.88 E-value=4.6e-22 Score=153.78 Aligned_cols=183 Identities=21% Similarity=0.345 Sum_probs=140.0
Q ss_pred EEEECCCEEEEECCCCHHHHHHHH-CCCHH--HHH---HHH---HH---HCCCCCHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 487227502652452002788741-22327--788---876---52---024410012345568764200456898----
Q gi|254780960|r 82 LLIADMDSTMIEQECIDELADLIG-IKEKV--SLI---TAR---AM---NGEIPFQDSLRERISLFKGTSTKIIDS---- 145 (297)
Q Consensus 82 l~~~d~d~tli~~~~l~~~a~~~~-~~~~~--~~~---~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 145 (297)
+++||+|+||+...++..+.+... ..... ..+ ..+ .. +...............+.+........
T Consensus 1 ~A~FD~D~TL~~~~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 80 (204)
T TIGR01490 1 LAFFDLDGTLTAKDTLLEFLKFLASKNILTEEERLPKVLARFEFFLNGKRNKDAMAAKRAIALDALAGLLEEDVREIVEE 80 (204)
T ss_pred CEEECCCCCHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 94514332011101098899997321430267875889999999850263563689999999998703208899999999
Q ss_pred HHH--HHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCC-HHHCCCCCCCCCCCCHHHHHH
Q ss_conf 874--21134543389999998419869998167234223226550864134310100-000000001563105211388
Q gi|254780960|r 146 LLE--KKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIE-KDDRLTGQVMEPIIDGTAKSQ 222 (297)
Q Consensus 146 ~~~--~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~-~~~~~~~~~~~~~~~~~~k~~ 222 (297)
+.. ....+++.+++.++.|+..|.++++|||++...++++|+.+|++++.++.+.. +++.+||++.+....+..|..
T Consensus 81 ~~~~~i~~~~~~~a~~~~~~H~~~G~~~vlvSaS~~~~v~~~A~~~G~~~~~g~~~~~~~dG~~tG~~~G~~~~~~~K~~ 160 (204)
T TIGR01490 81 FVNQKIESLLYPEARDLIKAHKAEGHTIVLVSASLEILVKPLARKLGIDNAIGTRLEEAEDGIYTGEIIGNNCKGEGKVH 160 (204)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEECCCCCCHHHHH
T ss_conf 86367653005899999999998089389981678899999998718660301200210277055235053235868999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEECCCH
Q ss_conf 775323310377667999978923488998489318987957
Q gi|254780960|r 223 ILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKP 264 (297)
Q Consensus 223 ~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~a~~ 264 (297)
.++++....++++++++||||+.||+|||+.+|..+..|+.+
T Consensus 161 al~~~~~~~~~~L~~syaY~Ds~~D~pll~lVG~p~~vnp~~ 202 (204)
T TIGR01490 161 ALAELLAEEQIDLKDSYAYSDSISDLPLLSLVGHPVVVNPDP 202 (204)
T ss_pred HHHHHHCCCCCCCCCEEEECCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 999983203788200245318702489999568982125687
No 28
>PRK10976 putative sugar phosphatase; Provisional
Probab=99.87 E-value=1.9e-21 Score=149.99 Aligned_cols=245 Identities=18% Similarity=0.176 Sum_probs=137.0
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEE
Q ss_conf 99845888768999999999860788835731880499982688894899999998402168634621455553444872
Q gi|254780960|r 6 TLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSIIADKPIDLIIHRHENRRKNLLIA 85 (297)
Q Consensus 6 TLi~~~~~~~l~~~~~~~i~~~~~~~~~~~La~~~A~e~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~l~~~ 85 (297)
||+.+.. .+++.+..+++.+.+.|....+|+||.. ..+.......+++..+...++. .+.
T Consensus 12 TLl~~~~--~is~~~~~ai~~l~~~Gi~~viATGR~~--------------~~~~~~~~~l~~~~~~I~~NGa----~i~ 71 (266)
T PRK10976 12 TLLSPDH--TLSPYAKETLKLLTARGIHFVFATGRHH--------------VDVGQIRDNLEIKSYMITSNGA----RVH 71 (266)
T ss_pred CCCCCCC--CCCHHHHHHHHHHHHCCCEEEEECCCCH--------------HHHHHHHHHCCCCCEEEECCCE----EEE
T ss_conf 6558879--7199999999999978999999979997--------------9999999973997418962877----999
Q ss_pred CCCEEEEECCCCHH-HHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 27502652452002-78874122327788876520244100123455687642004568988742113454338999999
Q gi|254780960|r 86 DMDSTMIEQECIDE-LADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTM 164 (297)
Q Consensus 86 d~d~tli~~~~l~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 164 (297)
|.++.++....++. .... +....... ..+...-+.............. .............. + ...+
T Consensus 72 d~~~~~i~~~~l~~~~~~~------i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~-~~~~ 139 (266)
T PRK10976 72 DTDGNLIFSHNLDRDIASD------LFGVVNDN--PDIITNVYRDDEWFMNRHRPEE-MRFFKEAVFNYQLY--E-PGLL 139 (266)
T ss_pred ECCCEEEEEECCCHHHHHH------HHHHHHHC--CCEEEEEEECCEEEEECCCHHH-HHHHHHCCCCCEEE--C-CCCC
T ss_conf 1798199972699999999------99999768--9858999967858991587778-99987503674031--3-0005
Q ss_pred HHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 84198699981672342232265508641343101000000000015631052113887753233103776679999789
Q gi|254780960|r 165 KQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDG 244 (297)
Q Consensus 165 ~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg 244 (297)
...++..++++.+.......+.+.+. ..+...... ..+.....+....+.+|+.+++.+|+.++++.++|++||||
T Consensus 140 ~~~~i~ki~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~s~~~~lEI~~~gvsKg~al~~l~~~lgi~~~eviafGD~ 215 (266)
T PRK10976 140 EPEGVSKVFFTCDSHEKLLPLEQAIN--ARWGDRVNV--SFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDG 215 (266)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHH--HHHCCCEEE--EEECCCHHHHCCCCCCHHHHHHHHHHHHCCCHHHEEEECCC
T ss_conf 76660599996699899999999999--871797899--98268478746999989999999999809998997996476
Q ss_pred CCHHHHHHHCCCEEEE-CCCHHHHHHCCE--EEECCCHHHHHHHC
Q ss_conf 2348899848931898-795789985898--99569832767870
Q gi|254780960|r 245 NNDLDMLRVAGYGVAF-HAKPALAKQAKI--RIDHSDLEALLYIQ 286 (297)
Q Consensus 245 ~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~--~~~~~dl~~~l~~~ 286 (297)
.||+|||++||+|||| ||.|.||+.|+. ++.+||-++|..+|
T Consensus 216 ~NDl~Ml~~ag~gvAM~NA~~~vK~~a~~~~v~~sN~edGVa~~l 260 (266)
T PRK10976 216 MNDAEMLSMAGKGCIMGNAHQRLKDLLPELEVIGSNADDAVPHYL 260 (266)
T ss_pred HHHHHHHHHCCCEEECCCCCHHHHHHCCCCEECCCCHHHHHHHHH
T ss_conf 445999997794798779889999757899835776223799999
No 29
>PRK10530 phosphotransferase; Provisional
Probab=99.87 E-value=6.4e-21 Score=146.80 Aligned_cols=249 Identities=16% Similarity=0.149 Sum_probs=131.9
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEE
Q ss_conf 99845888768999999999860788835731880499982688894899999998402168634621455553444872
Q gi|254780960|r 6 TLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSIIADKPIDLIIHRHENRRKNLLIA 85 (297)
Q Consensus 6 TLi~~~~~~~l~~~~~~~i~~~~~~~~~~~La~~~A~e~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~l~~~ 85 (297)
||+.+.+ .+++.+..+++.+.+.|....+|+||.. ..+.......+++......++ .+++
T Consensus 13 TLl~~~~--~i~~~~~~ai~~l~~~Gi~~~iaTGR~~--------------~~~~~~~~~l~~~~~~I~~NG----a~i~ 72 (272)
T PRK10530 13 TLLTPKK--TILPSSLEALARAREAGYQLIIVTGRHH--------------VAIHPFYQALALDTPAICCNG----TYLY 72 (272)
T ss_pred CCCCCCC--CCCHHHHHHHHHHHHCCCEEEEECCCCH--------------HHHHHHHHHHCCCCCEEEECC----EEEE
T ss_conf 6358989--5999999999999978999999959987--------------888999998099986897688----5999
Q ss_pred CC-CEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHH--HHHHHHHHHHHHHHHHHHH-HHCCCCCCHHHHH
Q ss_conf 27-502652452002788741223277888765202441001234--5568764200456898874-2113454338999
Q gi|254780960|r 86 DM-DSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLR--ERISLFKGTSTKIIDSLLE-KKITYNPGGYELV 161 (297)
Q Consensus 86 d~-d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i 161 (297)
|. ++.++....++.-.. ...+................... ....... ....+..... ...+.........
T Consensus 73 d~~~~~~l~~~~l~~~~~----~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 146 (272)
T PRK10530 73 DYQAKTVLEADPMPVQQA----LQLIELLNEHQIHGLMYVDDAMLYEHPTGHVI--RTSNWAQTLPPEQRPTFTQVASLA 146 (272)
T ss_pred ECCCCEEEEECCCCHHHH----HHHHHHHHHCCCCEEEEECCCEEEECCCHHHH--HHHHHHHHCCHHHCCCEEECCCHH
T ss_conf 779987999547999999----99999999849957999658489942516788--877777517664468657626387
Q ss_pred HHHHHC-CCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 999841-9869998167234223226550864134310100000000001563105211388775323310377667999
Q gi|254780960|r 162 HTMKQN-GASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIA 240 (297)
Q Consensus 162 ~~l~~~-g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~a 240 (297)
+..+.. .+....++.......+.+.+.+. .........+.....+....+.+|+.+++.+++.++++.++|++
T Consensus 147 ~~~~~~~~i~k~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~lei~~~g~sKg~al~~l~~~~gi~~~~via 220 (272)
T PRK10530 147 QAARQVNAIWKFALTHEDLPQLQHFAAHVE------HELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMENVVA 220 (272)
T ss_pred HHHHCCCCEEEEEECCCCHHHHHHHHHHHH------HHCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHEEE
T ss_conf 754312416999953889999999999877------75176898617870797579998999999999982989899798
Q ss_pred EECCCCHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECCCHHHHHHHC
Q ss_conf 97892348899848931898-79578998589899569832767870
Q gi|254780960|r 241 VGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 241 vGDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~dl~~~l~~~ 286 (297)
||||.||+|||+.||+|||| ||.|.+|+.||+++.++|-+++..+|
T Consensus 221 fGD~~NDl~Ml~~ag~gvAM~NA~~~vK~~Ad~Vt~sn~edGVa~~i 267 (272)
T PRK10530 221 FGDNFNDISMLEAAGTGVAMGNADDAVKARADLVIGDNTTDSIAQFI 267 (272)
T ss_pred ECCCHHHHHHHHHCCCEEECCCCCHHHHHHCCEECCCCCCCHHHHHH
T ss_conf 76856669999976947985799899998479856887656799999
No 30
>TIGR01488 HAD-SF-IB HAD-superfamily hydrolase, subfamily IB (PSPase-like); InterPro: IPR006383 This group represents a subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. Subfamily IA, B, C and D are distinguished from the rest of the superfamily by the presence of a variable domain between the first and second conserved catalytic motifs. In subfamilies IA and IB, this domain consists of an alpha-helical bundle. It was necessary to model these two subfamilies separately, breaking them at an apparent phylogenetic bifurcation, so that the resulting model(s) are not so broadly defined that members of subfamily III (which lack the variable domain) are included. ; GO: 0016791 phosphoric monoester hydrolase activity, 0008152 metabolic process.
Probab=99.86 E-value=4.5e-21 Score=147.72 Aligned_cols=173 Identities=34% Similarity=0.607 Sum_probs=152.4
Q ss_pred EEEECCCEEEEECCC-CHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH----------HHHHH---HHH
Q ss_conf 487227502652452-0027887412232778887652024410012345568764200----------45689---887
Q gi|254780960|r 82 LLIADMDSTMIEQEC-IDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTS----------TKIID---SLL 147 (297)
Q Consensus 82 l~~~d~d~tli~~~~-l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~---~~~ 147 (297)
+++||+|+||+..++ ++.+....+...++...+...+.+.+.+.+...++........ ..+.. ..+
T Consensus 1 l~~fDfDgTLt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~a~~~~~ 80 (204)
T TIGR01488 1 LAIFDFDGTLTRQDSLIDLLKKLLGTNDEVKELTRLALSGRISFEDALGRRLKLLERSRSFLEIKVDAKEELAKAVEEFL 80 (204)
T ss_pred CEEEECCCHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 86772051011201168999986176716899998875200448998755666653101235611455888988899888
Q ss_pred HHHCCCC---CCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCH----HHHHCCCCH-HH-CCCCCCCC----CC
Q ss_conf 4211345---433899999984198699981672342232265508641----343101000-00-00000156----31
Q gi|254780960|r 148 EKKITYN---PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ----YYANRFIEK-DD-RLTGQVME----PI 214 (297)
Q Consensus 148 ~~~~~~~---~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~----~~a~~~~~~-~~-~~~~~~~~----~~ 214 (297)
.....+. |++++.++.+|.+|+++++|||++..+++++++.+|++. ++++.+.++ ++ .+++.+.+ ..
T Consensus 81 ~~~~~~~r~~~~~~~~~~~~~~~G~~~~ivSgg~~~~~~~~~e~~g~~~~F~~~~~~~~~~~~~G~~~~g~~~~~~~~~~ 160 (204)
T TIGR01488 81 AKEVAIDRLYPGARELIKWLKEKGIKTVIVSGGLDFLVEPLAEKLGVDEVFKEVYANELEFDDNGVLLTGRIEGEKCDVN 160 (204)
T ss_pred HHHCCHHHCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHEEEEECCCEEECCCCCCCCCCCC
T ss_conf 64110132253089999999847992999808867999999975284344322232000454287054365444201266
Q ss_pred CCHHHHHHHHHHH-HHHHCC---CCCEEEEEECCCCHHHHHHHC
Q ss_conf 0521138877532-331037---766799997892348899848
Q gi|254780960|r 215 IDGTAKSQILLEA-IQKLQI---NPEDTIAVGDGNNDLDMLRVA 254 (297)
Q Consensus 215 ~~~~~k~~~~~~l-~~~~~~---~~~~v~avGDg~ND~pmL~~A 254 (297)
+....|+..+..+ ....+. ..+.++|+|||.||+||++.+
T Consensus 161 ~~~~~K~~~~~~~~~~~~~~~~~~~~~~~a~GD~~~D~~~~~~~ 204 (204)
T TIGR01488 161 VEGEEKGKVLKELELEESGLNRIDRKEIIAVGDSVNDLPMLKLA 204 (204)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHCC
T ss_conf 55220389999998730578874421077873698647866119
No 31
>pfam08282 Hydrolase_3 haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.
Probab=99.85 E-value=2e-20 Score=143.72 Aligned_cols=246 Identities=17% Similarity=0.218 Sum_probs=138.3
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEE
Q ss_conf 99845888768999999999860788835731880499982688894899999998402168634621455553444872
Q gi|254780960|r 6 TLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSIIADKPIDLIIHRHENRRKNLLIA 85 (297)
Q Consensus 6 TLi~~~~~~~l~~~~~~~i~~~~~~~~~~~La~~~A~e~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~l~~~ 85 (297)
||+.+.. .+++....+++...+.|....+|+||.. ..+.......+++..+...++ .+++
T Consensus 8 TLl~~~~--~i~~~~~~ai~~l~~~G~~~~iaTGR~~--------------~~~~~~~~~l~~~~~~I~~NG----a~i~ 67 (254)
T pfam08282 8 TLLNSDK--KISERTKEAIKKLQEKGIKVVIATGRPY--------------RGALPVLEELGLDLPVICFNG----AYIY 67 (254)
T ss_pred CCCCCCC--CCCHHHHHHHHHHHHCCCEEEEECCCCH--------------HHHHHHHHHCCCCCCEEECCC----CEEE
T ss_conf 5616959--3899999999999988999999949879--------------999999998099975997797----1999
Q ss_pred CCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 27502652452002788741223277888765202441001234556876420045689887421134543389999998
Q gi|254780960|r 86 DMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMK 165 (297)
Q Consensus 86 d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 165 (297)
+.++..+....++.- .+..+..........+.-+................. .............. .....
T Consensus 68 ~~~~~~l~~~~i~~~--------~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~ 137 (254)
T pfam08282 68 DENGKILYKNPISKE--------DVKEIIEYLKENNLSILLYTDDGAYILNDVSEKIVR-EERYVKSFVLVIDD-FELLE 137 (254)
T ss_pred ECCCEEEEEECCCHH--------HHHHHHHHHHHCCCEEEEEECCEEEEECCCHHHHHH-HHHHCCCCCCCCCC-HHHCC
T ss_conf 689869999349999--------999999999986986999989849996787077899-98621466653477-66716
Q ss_pred HCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 41986999816723422322655086413431010000000000156310521138877532331037766799997892
Q gi|254780960|r 166 QNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGN 245 (297)
Q Consensus 166 ~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ 245 (297)
...+..+++.++.... +.+.+.+. ..+...... ........+....+.+|+.+++.+++.++++.++|+++|||.
T Consensus 138 ~~~i~ki~~~~~~~~~-~~~~~~l~--~~~~~~~~~--~~s~~~~leI~~~~~~Kg~al~~l~~~lgi~~~~~~a~GD~~ 212 (254)
T pfam08282 138 DEDINKILIVTDPEDL-DELEKELK--ELFGSLITI--TSSGPGYLEIMPKGVSKGTALKALAKHLGIDLEEVIAFGDGE 212 (254)
T ss_pred CCCCEEEEEECCHHHH-HHHHHHHH--HHCCCCEEE--EEECCCEEEEEECCCCHHHHHHHHHHHCCCCHHHEEEECCCH
T ss_conf 7984699998798999-99999998--863994999--996895899994999999999999998599931599996867
Q ss_pred CHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECCCHHHHHHHC
Q ss_conf 348899848931898-79578998589899569832767870
Q gi|254780960|r 246 NDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 246 ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~dl~~~l~~~ 286 (297)
||+|||+.||+|||| ||.|.+|+.||+++.++|-.++..+|
T Consensus 213 NDi~Ml~~ag~~vAm~NA~~~vK~~A~~vt~s~~e~GVa~~i 254 (254)
T pfam08282 213 NDIEMLELAGLGVAMGNASPEVKAAADYVTGSNNEDGVAKAL 254 (254)
T ss_pred HHHHHHHHCCCEEECCCCCHHHHHHCCEECCCCCCCHHHHHC
T ss_conf 779999867947990798699998629126987557478659
No 32
>TIGR01491 HAD-SF-IB-PSPlk Phosphoserine phosphatase-like hydrolase, archaeal; InterPro: IPR006386 This group of sequences belong to the IB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases. As there are no known archaeal phosphoserine phosphatases, it seems likely that this group of sequences represent the archaeal branch of PSPase..
Probab=99.85 E-value=3.7e-21 Score=148.24 Aligned_cols=187 Identities=22% Similarity=0.321 Sum_probs=167.4
Q ss_pred CCCCEEEECCCEEEE-ECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHC
Q ss_conf 534448722750265-24520027887412232778887652024410012345568764200-----456898874211
Q gi|254780960|r 78 RRKNLLIADMDSTMI-EQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTS-----TKIIDSLLEKKI 151 (297)
Q Consensus 78 ~~~~l~~~d~d~tli-~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 151 (297)
|..+|++||+||||+ ...++..+.+..+...+.....+...+|.++|.+++.-.+.+..... ..-..+.+ ...
T Consensus 3 rmiKL~iFD~dGtLt~~~sSWey~Hrrl~t~~~A~kn~elf~~G~IsY~Ew~rlD~~lW~r~~~GRL~r~~~~ei~-~ei 81 (203)
T TIGR01491 3 RMIKLVIFDLDGTLTDEKSSWEYVHRRLETEELAKKNAELFESGSISYEEWARLDVELWLRASGGRLKREEVEEIL-KEI 81 (203)
T ss_pred CCEEEEEEECCCEEECCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH-HCC
T ss_conf 6205899806746744665465643231121056787898735960177888776998611688964388777766-125
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 34543389999998419869998167234223226550864134310100000000001563105211388775323310
Q gi|254780960|r 152 TYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKL 231 (297)
Q Consensus 152 ~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~ 231 (297)
+++.++.++++.||..|.++.+||||...+++.+++++++|..++|.+.++.+.+..-..-+.+....|..++.++...|
T Consensus 82 ~lrd~a~E~vr~Lke~Gl~~a~vsgGi~~L~~~vae~~~~Dy~~sN~l~fde~Gf~~p~g~~rV~~d~kg~av~rl~~eL 161 (203)
T TIGR01491 82 KLRDEAEEVVRMLKEKGLKTAVVSGGISLLVKKVAEKLNADYVLSNELVFDEKGFVQPDGIVRVIVDKKGIAVKRLKREL 161 (203)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 43310689999997567578641201889999999760805576403301588678887169984546527899999871
Q ss_pred CCCCCEEEEEECCCCHHHHHHHCCCEEEECCCHH
Q ss_conf 3776679999789234889984893189879578
Q gi|254780960|r 232 QINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPA 265 (297)
Q Consensus 232 ~~~~~~v~avGDg~ND~pmL~~AgvGVA~~a~~~ 265 (297)
+++.++|++|||+.||+||+..+++.|++|.+..
T Consensus 162 ~~S~~et~~vGDs~~d~~~~~~~~~~i~~g~~g~ 195 (203)
T TIGR01491 162 NASKEETVAVGDSKEDASIFEVADLAIALGDEGR 195 (203)
T ss_pred CCCCEEEEEEECCCCCCCEEEECCCCEEECCCCC
T ss_conf 8762306875235126644322252045569976
No 33
>PRK10513 sugar phosphatase; Provisional
Probab=99.85 E-value=4.6e-20 Score=141.55 Aligned_cols=253 Identities=17% Similarity=0.214 Sum_probs=133.6
Q ss_pred CCEEE-----EEEECCCCCCCCHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCC
Q ss_conf 96799-----9984588876899999999986078883573188049998268889489999999840216863462145
Q gi|254780960|r 1 MALIA-----TLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSIIADKPIDLIIHRH 75 (297)
Q Consensus 1 m~~v~-----TLi~~~~~~~l~~~~~~~i~~~~~~~~~~~La~~~A~e~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~ 75 (297)
|++|+ ||+.+.. .+++.+..+++...+.|....+|+||.. ......+.......+.+..+...
T Consensus 3 iKli~~DlDGTLl~~~~--~i~~~~~~ai~~l~~~Gi~~~iaTGR~~----------~~~~~~~~~l~~~~~~~~~I~~N 70 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH--TISPAVKNAIAAARAKGVNVVLTTGRPY----------AGVHRYLKELHMEQPGDYCITYN 70 (270)
T ss_pred CCEEEEECCCCCCCCCC--CCCHHHHHHHHHHHHCCCEEEEECCCCH----------HHHHHHHHHHCCCCCCCEEEECC
T ss_conf 42999936625258979--6899999999999978999999979986----------87899999838888998899859
Q ss_pred CCCCCCEEEEC-CCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHCCC
Q ss_conf 55534448722-7502652452002788741223277888765202441001234556876-420045689887421134
Q gi|254780960|r 76 ENRRKNLLIAD-MDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLF-KGTSTKIIDSLLEKKITY 153 (297)
Q Consensus 76 ~~~~~~l~~~d-~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (297)
+. ++.+ .++..+....+..-. .. .+..+.. .-...+.......+... ................++
T Consensus 71 Ga-----~i~~~~~~~~i~~~~l~~~~-~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (270)
T PRK10513 71 GA-----LVQKAADGSTVAQTALSYDD-YL----YLEKLSR---EVGSHFHALDRNTLYTANRDISYYTVHESFVATIPL 137 (270)
T ss_pred CE-----EEEECCCCCEEEECCCCHHH-HH----HHHHHHH---HHCCEEEEEECCEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 85-----99987999589971579899-99----9999999---729649996067799626651055346777615874
Q ss_pred CCCHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 5433899999984-198699981672342232265508641343101000000000015631052113887753233103
Q gi|254780960|r 154 NPGGYELVHTMKQ-NGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQ 232 (297)
Q Consensus 154 ~~~~~~~i~~l~~-~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~ 232 (297)
. ...+..+.. ..+...++...+....+.+.+ +. ......+. .........+....+.+|+.+++.++++++
T Consensus 138 ~---~~~~~~~~~~~~~~ki~~~~~~~~~~~~~~~-~~--~~~~~~~~--~~~s~~~~ieI~~~~~sKg~al~~l~~~lg 209 (270)
T PRK10513 138 V---FCEVEKMDPNTQFLKVMMIDEPEILDRAIAR-IP--AEVKEKYT--VLKSAPYFLEILDKRVNKGTGVKSLAEHLG 209 (270)
T ss_pred E---EEEHHHCCCCCCEEEEEEECCHHHHHHHHHH-HH--HHHHCCEE--EEEECCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 0---1017662755534599996888999999999-88--98539699--999679389997699988999999999819
Q ss_pred CCCCEEEEEECCCCHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECCCHHHHHHHC
Q ss_conf 7766799997892348899848931898-79578998589899569832767870
Q gi|254780960|r 233 INPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 233 ~~~~~v~avGDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~dl~~~l~~~ 286 (297)
++.++|++||||.||++||+.||.|||| ||.|.+|+.||+++.+++-+++.++|
T Consensus 210 i~~~~v~afGD~~NDl~Ml~~ag~~vAM~NA~~~vK~~Ad~vt~sn~edGVa~~l 264 (270)
T PRK10513 210 IKPEEVMAIGDQENDIAMIEYAGVGVAMGNAIPSVKEVANFVTKSNLEDGVAFAI 264 (270)
T ss_pred CCHHHEEEECCCHHHHHHHHHCCCEEECCCCCHHHHHHCCEECCCCCCCHHHHHH
T ss_conf 8989968845762559999976928992799899998469616987556799999
No 34
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.5e-21 Score=149.31 Aligned_cols=125 Identities=26% Similarity=0.291 Sum_probs=106.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 89887421134543389999998419869998167234223226550864134310100000000001563105211388
Q gi|254780960|r 143 IDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQ 222 (297)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~ 222 (297)
..+.+..+|.+.||.++-+.++++.|++++|+|||++.++..|+++.|+|++.++ ++|+
T Consensus 438 ~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiAe---------------------atPE 496 (681)
T COG2216 438 ILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIAE---------------------ATPE 496 (681)
T ss_pred EEEEEEEHHHCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCHHHHHC---------------------CCHH
T ss_conf 9999986431353489999999965975999808977779999987180146552---------------------8958
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEEC-CCHHHHHHCCEEEECCCHHHHHHHCCC
Q ss_conf 775323310377667999978923488998489318987-957899858989956983276787098
Q gi|254780960|r 223 ILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH-AKPALAKQAKIRIDHSDLEALLYIQGY 288 (297)
Q Consensus 223 ~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~-a~~~v~~~Ad~~~~~~dl~~~l~~~g~ 288 (297)
.+..++++.|..++-|+|+|||.||+|+|.+||+|+||| +...+||+|+.+=..+|-+-|+-...+
T Consensus 497 dK~~~I~~eQ~~grlVAMtGDGTNDAPALAqAdVg~AMNsGTqAAkEAaNMVDLDS~PTKlievV~I 563 (681)
T COG2216 497 DKLALIRQEQAEGRLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAANMVDLDSNPTKLIEVVEI 563 (681)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCHHHHHCCHHHHHCCCCHHHHHHHCCCCCCCCCHHEEHHHHH
T ss_conf 8999999887459589980799876456650362344445448889763542368995011017533
No 35
>KOG0203 consensus
Probab=99.82 E-value=1.4e-20 Score=144.76 Aligned_cols=146 Identities=22% Similarity=0.227 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHH-------HHCCC----CHHHC-
Q ss_conf 0045689887421134543389999998419869998167234223226550864134-------31010----00000-
Q gi|254780960|r 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYY-------ANRFI----EKDDR- 205 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~-------a~~~~----~~~~~- 205 (297)
.....+.+.....+|+|..+++++..|+.+|++++|+|||++.+++++|+..||-..- +.... ..+.+
T Consensus 576 ~~nl~FlGl~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~ 655 (1019)
T KOG0203 576 TDNLRFLGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRD 655 (1019)
T ss_pred CHHCCCCCHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCEEECCCCHHHHHHHHHCCCCEECCCCCC
T ss_conf 01021012343038986568166666576081599993775415666565302313784546777875497604046555
Q ss_pred ------------------CCC--CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEEC--CC
Q ss_conf ------------------000--01563105211388775323310377667999978923488998489318987--95
Q gi|254780960|r 206 ------------------LTG--QVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH--AK 263 (297)
Q Consensus 206 ------------------~~~--~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~--a~ 263 (297)
+.. .+...+++++.+|+++..+++..+..+..|..+|||+||.|+||.||+||||| +.
T Consensus 656 a~a~VihG~eL~~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGiaGS 735 (1019)
T KOG0203 656 AKAAVIHGSELPDMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGS 735 (1019)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCEEEEEHHHHHCCCEEEEECCCCCCCHHHCCCCCCEEECCCCC
T ss_conf 75478845001226999999999608737997268002254361344168689995898678744400354645323430
Q ss_pred HHHHHHCCEEEECCCHHHHH
Q ss_conf 78998589899569832767
Q gi|254780960|r 264 PALAKQAKIRIDHSDLEALL 283 (297)
Q Consensus 264 ~~v~~~Ad~~~~~~dl~~~l 283 (297)
+..|.+||.++...++.++.
T Consensus 736 DvsKqAADmILLDDNFASIV 755 (1019)
T KOG0203 736 DVSKQAADMILLDDNFASIV 755 (1019)
T ss_pred HHHHHHCCEEEECCCCHHHE
T ss_conf 67774244698617505422
No 36
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.81 E-value=9.1e-19 Score=133.63 Aligned_cols=76 Identities=32% Similarity=0.415 Sum_probs=71.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECCCHHHHHHHC
Q ss_conf 56310521138877532331037766799997892348899848931898-79578998589899569832767870
Q gi|254780960|r 211 MEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 211 ~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~dl~~~l~~~ 286 (297)
.+....+.+|+.+++.++++++++.++|+++|||.||++||+.||+|||| ||.|.+|+.||+++.+++-+++..+|
T Consensus 145 ~ei~~~~vsKg~al~~l~~~~gi~~~~viafGD~~NDi~Ml~~ag~~vAM~NA~~~vK~~A~~Vt~~~~edGva~~l 221 (226)
T PRK01158 145 IHIKSKGVNKGSGLKKLAEILGIEPEEVAAIGDSENDLPMFKVAGFGIAVANADENLKEAADYVTKASYGEGVAEAI 221 (226)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCHHHEEEECCCCCCHHHHHHCCCEEEECCCCHHHHHHCCEECCCCCCHHHHHHH
T ss_conf 99972898899999999998496989967646874689999858918994799889998559856988763999999
No 37
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.77 E-value=4.3e-18 Score=129.52 Aligned_cols=78 Identities=23% Similarity=0.218 Sum_probs=70.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCHHHHHHHCCCEEEE-CCC----HHHHHHCCEEEECCCHHHH
Q ss_conf 0156310521138877532331037766-799997892348899848931898-795----7899858989956983276
Q gi|254780960|r 209 QVMEPIIDGTAKSQILLEAIQKLQINPE-DTIAVGDGNNDLDMLRVAGYGVAF-HAK----PALAKQAKIRIDHSDLEAL 282 (297)
Q Consensus 209 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~-~v~avGDg~ND~pmL~~AgvGVA~-~a~----~~v~~~Ad~~~~~~dl~~~ 282 (297)
+..+....+.+|+.+++.+++++++..+ +|+|||||.||+|||++||+|||| ||. +.+++.|+++..+++-+++
T Consensus 182 ~~leI~~~gv~Kg~al~~l~~~lgi~~~~e~iAfGD~~NDl~Ml~~ag~gVAMgNa~~~~~~~~k~~~~~~t~~n~~~Gv 261 (275)
T PRK00192 182 RFLHLLGGGSDKGKAVNWLKEYYQRGEDVKTIALGDSPNDLPMLEAADIAVVIPGPDGPNPPLLRGIEFTLASAPGPEGW 261 (275)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEECCCCCCHHH
T ss_conf 16981489999999999999984799854489967970109999848975996389889834123246598789996899
Q ss_pred HHHC
Q ss_conf 7870
Q gi|254780960|r 283 LYIQ 286 (297)
Q Consensus 283 l~~~ 286 (297)
.+.+
T Consensus 262 a~ai 265 (275)
T PRK00192 262 AEAV 265 (275)
T ss_pred HHHH
T ss_conf 9999
No 38
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=126.11 Aligned_cols=241 Identities=18% Similarity=0.184 Sum_probs=131.6
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEE
Q ss_conf 99845888768999999999860788835731880499982688894899999998402168634621455553444872
Q gi|254780960|r 6 TLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSIIADKPIDLIIHRHENRRKNLLIA 85 (297)
Q Consensus 6 TLi~~~~~~~l~~~~~~~i~~~~~~~~~~~La~~~A~e~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~l~~~ 85 (297)
||+.+... +++.+..+++.+.+.|....+++||.. ..+.......+++..+...++. .++
T Consensus 13 TLl~~~~~--i~~~~~~al~~~~~~g~~v~iaTGR~~--------------~~~~~~~~~l~~~~~~I~~NGa----~i~ 72 (264)
T COG0561 13 TLLDSNKT--ISPETKEALARLREKGVKVVLATGRPL--------------PDVLSILEELGLDGPLITFNGA----LIY 72 (264)
T ss_pred CCCCCCCC--CCHHHHHHHHHHHHCCCEEEEECCCCH--------------HHHHHHHHHCCCCCCEEECCCC----EEE
T ss_conf 67489998--899999999999978298999889987--------------9999999972999849986895----999
Q ss_pred CCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 27502652452002788741223277888765202-44100123455687642004568988742113454338999999
Q gi|254780960|r 86 DMDSTMIEQECIDELADLIGIKEKVSLITARAMNG-EIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTM 164 (297)
Q Consensus 86 d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 164 (297)
+. +..+....++.- .+..+....... ...+............... ..........+..+.... ....
T Consensus 73 ~~-~~~i~~~~l~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~ 140 (264)
T COG0561 73 NG-GELLFQKPLSRE--------DVEELLELLEDFQGIALVLYTDDGIYLTKKRG--TFAEARIGFANLSPVGRE-AAEL 140 (264)
T ss_pred EC-CEEEEECCCCHH--------HHHHHHHHHHHCCCCCEEEEECCCEEEECCCC--CHHHHHHCCCCCCCCCCC-CCCC
T ss_conf 89-988882469999--------99999999986678628999326414513575--025555213444422232-0003
Q ss_pred HHCCCEEEEEECCCHHHHH---HHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8419869998167234223---2265508641343101000000000015631052113887753233103776679999
Q gi|254780960|r 165 KQNGASTLLVTGGFSIFAR---FIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAV 241 (297)
Q Consensus 165 ~~~g~~v~iisg~~~~~~~---~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~av 241 (297)
.. .....+.-+.....+ .+.+.+.- .............+....+.+|+.+++.+++++++..++|+++
T Consensus 141 ~~--~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~s~~~~lei~~~g~~K~~al~~l~~~lgi~~~~v~af 211 (264)
T COG0561 141 ED--NKIIALDKDHEILEELVEALRKRFPD-------LGLTVSSSGPISLDITPKGVSKGYALQRLAKLLGIKLEEVIAF 211 (264)
T ss_pred CC--CEEEEEECCHHHHHHHHHHHHHHCCC-------CCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 54--20355302355489999999876376-------6269985588458999899989999999999839992119998
Q ss_pred ECCCCHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECCCHHHHHHHCC
Q ss_conf 7892348899848931898-795789985898995698327678709
Q gi|254780960|r 242 GDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSDLEALLYIQG 287 (297)
Q Consensus 242 GDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~dl~~~l~~~g 287 (297)
|||.||++||+.||.|||| ||.|.+|+.|+++..+++-.++..+|-
T Consensus 212 GD~~ND~~Ml~~ag~gvam~Na~~~~k~~A~~vt~~n~~~Gv~~~l~ 258 (264)
T COG0561 212 GDSTNDIEMLEVAGLGVAMGNADEELKELADYVTTSNDEDGVAEALE 258 (264)
T ss_pred CCCCCCHHHHHHCCCEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 89743398897449306717978989853702146755317999999
No 39
>pfam05116 S6PP Sucrose-6F-phosphate phosphohydrolase. This family consists of Sucrose-6F-phosphate phosphohydrolase proteins found in plants and cyanobacteria. Sucrose-6(F)-phosphate phosphohydrolase catalyses the final step in the pathway of sucrose biosynthesis.
Probab=99.74 E-value=2.5e-17 Score=124.79 Aligned_cols=81 Identities=22% Similarity=0.231 Sum_probs=73.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE-CCCHHHHHHCC---------EEEE
Q ss_conf 0000156310521138877532331037766799997892348899848931898-79578998589---------8995
Q gi|254780960|r 206 LTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAK---------IRID 275 (297)
Q Consensus 206 ~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad---------~~~~ 275 (297)
+.+...+....+.+|+.+++.++++++++.++|++||||.||++||+.||.|||| ||.|.||+.++ ++..
T Consensus 152 s~~~~ldI~~~gvsKg~aL~~L~~~lgi~~eev~afGD~~NDl~Ml~~ag~gvAM~NA~pElkq~~~~~~~~~~~~y~~~ 231 (247)
T pfam05116 152 SSGRDLDILPLRASKGQALRYLAKKWGLPPENTLVCGDSGNDAELFIGGVRGVVVGNAQPELLQWYLENARDNPRIYFAS 231 (247)
T ss_pred ECCCEEEEECCCCCHHHHHHHHHHHHCCCHHHCEEECCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHCCCCCCEEEEC
T ss_conf 88947998079999999999999984939899475267620299996269589925997999998875314677269867
Q ss_pred CCCHHHHHHHC
Q ss_conf 69832767870
Q gi|254780960|r 276 HSDLEALLYIQ 286 (297)
Q Consensus 276 ~~dl~~~l~~~ 286 (297)
.++-++++-.|
T Consensus 232 ~~~~~gi~~~~ 242 (247)
T pfam05116 232 GRCAAGILEGL 242 (247)
T ss_pred CCCCHHHHHHH
T ss_conf 97701999999
No 40
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.74 E-value=9.1e-17 Score=121.39 Aligned_cols=206 Identities=18% Similarity=0.240 Sum_probs=136.8
Q ss_pred CCCCCCEEEECCCEEEEECCC-----CHHHHHHHHCCCHHHHHHHH------------HHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 555344487227502652452-----00278874122327788876------------5202441001234556876420
Q gi|254780960|r 76 ENRRKNLLIADMDSTMIEQEC-----IDELADLIGIKEKVSLITAR------------AMNGEIPFQDSLRERISLFKGT 138 (297)
Q Consensus 76 ~~~~~~l~~~d~d~tli~~~~-----l~~~a~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 138 (297)
.++.+++++||+||||++.+. ++......|......+.... ...+..................
T Consensus 9 ~~~~pKaVIFDLDGTLvDS~p~~~~a~~~~L~~lG~~~~~~e~vr~~iG~g~~~lv~r~L~~~~~~~~i~~~~~e~~~~~ 88 (272)
T PRK13223 9 PGRLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALAL 88 (272)
T ss_pred CCCCCEEEEECCCCCHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 99996399987987565099999999999999888998999999999638899999998643245456679999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHH
Q ss_conf 04568988742113454338999999841986999816723422322655086413431010000000000156310521
Q gi|254780960|r 139 STKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGT 218 (297)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (297)
-...+... ....++.|+++++++.|+++|+++.++|+.+..++.++-+.+|+.++|......++ ...+.
T Consensus 89 f~~~y~~~-~~~~~lyPGV~e~L~~L~~~Gi~laIvTnk~~~~~~~iL~~lgL~~~Fd~VvggDd----------v~~~K 157 (272)
T PRK13223 89 FMEAYAES-HELTVVYPGVRDTLKWLRKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDT----------LPQKK 157 (272)
T ss_pred HHHHHHHH-CCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCHHHCCCCCCCCC----------CCCCC
T ss_conf 99999973-65567684799999999978997899639817899999987497241464534576----------99999
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCE---EEE--C-CCHHHHHHCCEEEECCCHHHHHHHCCCCHHH
Q ss_conf 138877532331037766799997892348899848931---898--7-9578998589899569832767870988888
Q gi|254780960|r 219 AKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG---VAF--H-AKPALAKQAKIRIDHSDLEALLYIQGYKKDE 292 (297)
Q Consensus 219 ~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG---VA~--~-a~~~v~~~Ad~~~~~~dl~~~l~~~g~~~~~ 292 (297)
-.|+.+...+++++++.++|+||||+.||+.|=+.||+- |.| | +.+.....+|++++ +|+.||+.+|.-..|
T Consensus 158 PdP~~ll~ale~lGv~P~e~l~VGDS~~DI~AAkaAGi~~VgVtyGYn~g~~i~~~~pd~v~d--~~~ellp~~~~~~~~ 235 (272)
T PRK13223 158 PDPAALLFVMKMAGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPTLVID--DLRALLPGCADPAAE 235 (272)
T ss_pred CCHHHHHHHHHHHCCCHHHEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCCCEEEC--CHHHHCCCCCCCCCC
T ss_conf 998999999999598976888888988899999986995899747999986366749998976--799872333787644
Q ss_pred HC
Q ss_conf 30
Q gi|254780960|r 293 IV 294 (297)
Q Consensus 293 ~~ 294 (297)
++
T Consensus 236 ~~ 237 (272)
T PRK13223 236 IT 237 (272)
T ss_pred EE
T ss_conf 14
No 41
>KOG0205 consensus
Probab=99.71 E-value=1.6e-17 Score=126.05 Aligned_cols=152 Identities=17% Similarity=0.109 Sum_probs=120.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCC---CH-HHCCC-----CCCCC
Q ss_conf 68988742113454338999999841986999816723422322655086413431010---00-00000-----00156
Q gi|254780960|r 142 IIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFI---EK-DDRLT-----GQVME 212 (297)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~---~~-~~~~~-----~~~~~ 212 (297)
.+.+.....+|+|....+.++.-...|.+|.|+|||...+...-.+++|...-+.+... .. ++... ..+..
T Consensus 482 ~~~gllp~fdpprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~elie~ 561 (942)
T KOG0205 482 EFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEK 561 (942)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 01365656789754358899999851642554122288877665243246657678243226777887777838988663
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECCCHHHHHHHCCCCHH
Q ss_conf 310521138877532331037766799997892348899848931898-7957899858989956983276787098888
Q gi|254780960|r 213 PIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSDLEALLYIQGYKKD 291 (297)
Q Consensus 213 ~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~dl~~~l~~~g~~~~ 291 (297)
..-++..-++++.+++++++..++.|.|+|||+||+|+||.||+|||. +|.+.++.++|+++..+.|+.+...+=+|+.
T Consensus 562 adgfAgVfpehKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiava~atdaar~asdiVltepglSviI~avltSra 641 (942)
T KOG0205 562 ADGFAGVFPEHKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRA 641 (942)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCHHHCCCCCCEEECCCHHHHCCCCCEEECCCCCHHHHHHHHHHHH
T ss_conf 25762127888899999986368255145788665412224653226536045542534478737883014688998999
Q ss_pred HH
Q ss_conf 83
Q gi|254780960|r 292 EI 293 (297)
Q Consensus 292 ~~ 293 (297)
=|
T Consensus 642 If 643 (942)
T KOG0205 642 IF 643 (942)
T ss_pred HH
T ss_conf 99
No 42
>PRK13227 consensus
Probab=99.66 E-value=4.7e-15 Score=110.93 Aligned_cols=129 Identities=24% Similarity=0.327 Sum_probs=101.6
Q ss_pred HHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 21134543389999998419869998167234223226550864134310100000000001563105211388775323
Q gi|254780960|r 149 KKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAI 228 (297)
Q Consensus 149 ~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~ 228 (297)
....+.|++.++++.|+++|+++.++|+.....++.+.+.+|+.+++......++ ...+.-.|+.....+
T Consensus 93 ~~~~l~pgv~~~L~~Lk~~g~~~~ivTn~~~~~~~~~l~~~gl~~~Fd~iv~~dd----------v~~~KP~P~~~~~~~ 162 (228)
T PRK13227 93 EGSFLYPNVKETLEALKAQGYPLALVTNKPTPFVAPLLEALGIADYFSVVIGGDS----------LPNKKPHPAPLLLVC 162 (228)
T ss_pred HCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHCCCC----------CCCCCCCHHHHHHHH
T ss_conf 2286182699999999987996578845706766678886093554344300333----------577799759999999
Q ss_pred HHHCCCCCEEEEEECCCCHHHHHHHCCCE-EE--EC--CCHHHH-HHCCEEEECCCHHHHHHHCCCC
Q ss_conf 31037766799997892348899848931-89--87--957899-8589899569832767870988
Q gi|254780960|r 229 QKLQINPEDTIAVGDGNNDLDMLRVAGYG-VA--FH--AKPALA-KQAKIRIDHSDLEALLYIQGYK 289 (297)
Q Consensus 229 ~~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA--~~--a~~~v~-~~Ad~~~~~~dl~~~l~~~g~~ 289 (297)
++++++.++|++|||+.+|+.+=+.||+- |+ ++ ..+.++ ..||++++ ++..||-+||..
T Consensus 163 ~~l~~~p~~~l~VGDs~~Di~aA~~AG~~~i~v~~G~~~~~~l~~~~ad~vi~--~~~eL~~~L~~~ 227 (228)
T PRK13227 163 EKLGIAPEQMLFVGDSRNDILAAKAAGCPSVGLTYGYNYGEPIALSNPDVVFD--SFADLLPALGLP 227 (228)
T ss_pred HHHCCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCEEEC--CHHHHHHHHCCC
T ss_conf 98196975499977788899999996990999878999876898789999989--999999982899
No 43
>TIGR01106 ATPase-IIC_X-K Na,H/K antiporter P-type ATPase, alpha subunit; InterPro: IPR005775 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the alpha subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H^+/K^+-ATPases (3.6.3.10 from EC) and Na^+/K^+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases , . These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H^+ or Na^+) in exchange for K^+. These ATPases contain an alpha subunit that is the catalytic component, and a regulatory beta subunit (IPR000402 from INTERPRO) that stabilizes the alpha/beta assembly . Different alpha and beta isoforms exist, permitting greater regulatory control. An example of a H^+/K^+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalization of potassium ions, using ATP hydrolysis to drive the pump . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0005524 ATP binding, 0015077 monovalent inorganic cation transmembrane transporter activity, 0016820 hydrolase activity acting on acid anhydrides catalyzing transmembrane movement of substances, 0015672 monovalent inorganic cation transport, 0016021 integral to membrane.
Probab=99.65 E-value=6.7e-17 Score=122.19 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=121.2
Q ss_pred CCHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCH-------H
Q ss_conf 10012345568-764200456898874211345433899999984198699981672342232265508641-------3
Q gi|254780960|r 123 PFQDSLRERIS-LFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ-------Y 194 (297)
Q Consensus 123 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~-------~ 194 (297)
.|...+..... .-.......+.++....+|+|..+++++..|+.+|++++|+|||++.+++++++..|+-- -
T Consensus 538 ~~P~~~~f~~~~~nf~~~~l~f~Gl~smidPPr~~vPdav~kCr~aGi~vimvtGdhPitakaia~~vGiis~~~e~~ed 617 (998)
T TIGR01106 538 QYPEGFKFDVDEVNFPTENLCFVGLLSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGNETVED 617 (998)
T ss_pred CCCCCCCCCHHHHCCCHHCCEEEEEEEECCCCCCCCHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHCCEEECCCCHHHH
T ss_conf 37863220112211541000003311103886443304677552257079998179851477775112312257420788
Q ss_pred HHHCCCC-----------------------HHHCCC--CCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf 4310100-----------------------000000--001563105211388775323310377667999978923488
Q gi|254780960|r 195 YANRFIE-----------------------KDDRLT--GQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLD 249 (297)
Q Consensus 195 ~a~~~~~-----------------------~~~~~~--~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~p 249 (297)
++..+.+ ....+. -.....+++++..|+.+..+++..+.....|+.+|||+||.|
T Consensus 618 ia~rl~~~~~~v~~~~a~a~v~~G~~l~d~~~~~l~~~l~~~~e~vfartsPqqkl~ive~Cqr~~a~vavtGdGvndsP 697 (998)
T TIGR01106 618 IAARLNIPVEQVNKRDAKACVVHGAELKDMSSEQLDEILKNHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSP 697 (998)
T ss_pred HHHHHCCCHHHCCCCCCCEEEEECCHHCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCEEEEECCCCCCCC
T ss_conf 99873023664021012121341511104788899999851241677514886117897324555537897258745660
Q ss_pred HHHHCCCEEEEC--CCHHHHHHCCEEEECCCHHHHH
Q ss_conf 998489318987--9578998589899569832767
Q gi|254780960|r 250 MLRVAGYGVAFH--AKPALAKQAKIRIDHSDLEALL 283 (297)
Q Consensus 250 mL~~AgvGVA~~--a~~~v~~~Ad~~~~~~dl~~~l 283 (297)
+||.||+||||+ +.+..|.+||.++...++.++.
T Consensus 698 alkkadiG~amGiaGsd~~k~aadm~llddnfasiv 733 (998)
T TIGR01106 698 ALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIV 733 (998)
T ss_pred HHHHCCCCEEECCCCCHHHHHHHCEEEECCCCEEEE
T ss_conf 011112303430131123332211433304520001
No 44
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.62 E-value=1.8e-14 Score=107.33 Aligned_cols=130 Identities=25% Similarity=0.343 Sum_probs=102.4
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 11345433899999984198699981672342232265508641343101000000000015631052113887753233
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQ 229 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~ 229 (297)
...+.|++.++++.|+++|+++.++|+.....++.+-+++|+.+++......++ ...+.-.|+.....++
T Consensus 91 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~F~~i~~~d~----------v~~~KP~P~~~~~a~~ 160 (228)
T PRK13222 91 LSRLYPGVKETLAALKAAGYPLAVVTNKPEPFVAPLLEALGIADYFSVVIGGDS----------LPNKKPDPAPLLLACE 160 (228)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCC----------CCCCCCCHHHHHHHHH
T ss_conf 186483599999999987996477548749999999886276533234663222----------4777878699999999
Q ss_pred HHCCCCCEEEEEECCCCHHHHHHHCCCE-EEE--C--CCHHHH-HHCCEEEECCCHHHHHHHCCCCHH
Q ss_conf 1037766799997892348899848931-898--7--957899-858989956983276787098888
Q gi|254780960|r 230 KLQINPEDTIAVGDGNNDLDMLRVAGYG-VAF--H--AKPALA-KQAKIRIDHSDLEALLYIQGYKKD 291 (297)
Q Consensus 230 ~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~--~--a~~~v~-~~Ad~~~~~~dl~~~l~~~g~~~~ 291 (297)
+++++.++|++|||+.+|+.+=+.||+- |++ + ..+..+ ..||++++ ++..|+-+||....
T Consensus 161 ~lg~~p~e~l~VGDs~~Di~aA~~aG~~~i~v~~G~~~~~~l~~~~ad~vi~--~~~eL~~~Lg~~~~ 226 (228)
T PRK13222 161 KLGIDPEQMLFVGDSRNDIQAAKAAGCPSVGVTYGYNYGEDIALSEPDVVID--HFAELLPALGLALS 226 (228)
T ss_pred HCCCCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEC--CHHHHHHHHCHHCC
T ss_conf 8197934348980688899999996994999878999977897689999989--99999998553202
No 45
>PRK13229 consensus
Probab=99.59 E-value=4.9e-14 Score=104.68 Aligned_cols=125 Identities=18% Similarity=0.231 Sum_probs=94.4
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 11345433899999984198699981672342232265508641343101000000000015631052113887753233
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQ 229 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~ 229 (297)
...+.|++.++++.|+++|+++.++|+.....++.+.+.+|+..++......++ ...+.-.|+.....++
T Consensus 92 ~~~~~pGv~e~L~~L~~~G~~laI~Tn~~~~~~~~~l~~~gl~~~F~~i~~~d~----------~~~~KP~P~~~~~al~ 161 (234)
T PRK13229 92 HSSPYPGLLEAMDRFASAGYQLAVCTNKYEELSVKLLESLGLAARFAAICGGDT----------FSWRKPDPRHLTETIA 161 (234)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCHHHHCEEEECCC----------CCCCCCCHHHHHHHHH
T ss_conf 181574799999999977997452169707888877521362123036761355----------7789988999999999
Q ss_pred HHCCCCCEEEEEECCCCHHHHHHHCCCE---EEEC-C-CHHHHHHCCEEEECCCHHHHHHHC
Q ss_conf 1037766799997892348899848931---8987-9-578998589899569832767870
Q gi|254780960|r 230 KLQINPEDTIAVGDGNNDLDMLRVAGYG---VAFH-A-KPALAKQAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 230 ~~~~~~~~v~avGDg~ND~pmL~~AgvG---VA~~-a-~~~v~~~Ad~~~~~~dl~~~l~~~ 286 (297)
+++++.++|++|||+.+|+.+=+.||+- |.+| + .+.-...+|++++ ++..|...|
T Consensus 162 ~l~~~p~~~l~VGDs~~Di~aA~~AGi~~i~v~~G~~~~~l~~~~pd~ii~--~~~EL~~~l 221 (234)
T PRK13229 162 RAGGDRDRALMVGDSRTDIDTAKAAGIPVVAVDFGYSDVPVQHLEPSRVIS--HFDELTPEL 221 (234)
T ss_pred HHCCCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCHHHCCCCEEEC--CHHHHHHHH
T ss_conf 819996367999268989999999699089986899966576769999989--999989999
No 46
>TIGR01487 SPP-like SPP-like hydrolase, Archaeal; InterPro: IPR006382 This group of Archaeal sequences is most closely related to the sucrose-phosphate phosphatases (SPP) from plants and cyanobacteria. If it should be shown that the proteins in this family possess sucrose-phosphatase activity then SPP would represent a broad family of functionally related proteins..
Probab=99.58 E-value=8.1e-15 Score=109.47 Aligned_cols=204 Identities=18% Similarity=0.186 Sum_probs=124.1
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEE
Q ss_conf 99845888768999999999860788835731880499982688894899999998402168634621455553444872
Q gi|254780960|r 6 TLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSIIADKPIDLIIHRHENRRKNLLIA 85 (297)
Q Consensus 6 TLi~~~~~~~l~~~~~~~i~~~~~~~~~~~La~~~A~e~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~l~~~ 85 (297)
||.-......++...+.+++.+...|.++.|.+|+.. +.. +.+.-..+++..+...++ .++.|
T Consensus 11 TLT~~~~~~~I~~~A~e~iRk~~k~GI~V~LvtGN~~-----------~f~---~al~~~i~~~G~v~~ENG---g~~~~ 73 (223)
T TIGR01487 11 TLTDEEKNRLISLRAIEAIRKAEKKGIKVSLVTGNVV-----------PFA---RALAVLIGVSGPVVAENG---GVVFF 73 (223)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCHH-----------HHH---HHHHHHHCCCCCEEEECC---CEEEE
T ss_conf 4254444631088899999867527836999808827-----------998---888875068886896268---38997
Q ss_pred CCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 27502652452002788741223277888765202441001234556876420045689887421134543389999998
Q gi|254780960|r 86 DMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMK 165 (297)
Q Consensus 86 d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 165 (297)
.-++.-+ .++ .+. ............ . +...-..+.-.
T Consensus 74 ~~~~~~~------~~~---~~~-------------------------------~~~~~~~~~~~~-~--~~~~~~~~y~~ 110 (223)
T TIGR01487 74 NDDSEDI------FLS---NEE-------------------------------KESFLDEVKKKI-E--LRDLLKNEYSI 110 (223)
T ss_pred CCCCEEE------EEE---CCC-------------------------------HHHHHHHHHHHH-H--HHHHHEEECCC
T ss_conf 5798035------320---232-------------------------------145667777665-3--43320111145
Q ss_pred HCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 41986999816723422322655086413431010000000000156310521138877532331037766799997892
Q gi|254780960|r 166 QNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGN 245 (297)
Q Consensus 166 ~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ 245 (297)
.+-..+.|+.|--...+..++++.|+.=. ..+. +.-......+..|+-+++.+++++|+..++++++|||.
T Consensus 111 ~R~~~~~~~~~~~~d~~~~~~~~~gl~~~------~vDS---G~a~Hi~~~~~~KG~gv~~~~EllGlk~~e~~~iGDSe 181 (223)
T TIGR01487 111 GRASLVVDREGKDVDEVRKIAKERGLEVV------SVDS---GYAVHIMKKGVDKGVGVKKLKELLGLKKEEIAAIGDSE 181 (223)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHCCEEEE------EEEC---CCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 52676786055008899999884884899------9706---52467516999840899999986088810188985884
Q ss_pred CHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECCC
Q ss_conf 348899848931898-795789985898995698
Q gi|254780960|r 246 NDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSD 278 (297)
Q Consensus 246 ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~d 278 (297)
||++||+.||.+||. ||.|.+|+.||+++.+++
T Consensus 182 ND~~~F~v~gfk~AvANA~d~lKe~AD~VT~~~~ 215 (223)
T TIGR01487 182 NDIDLFRVAGFKVAVANADDELKEIADYVTENPY 215 (223)
T ss_pred CCHHHHCCCCCEEEECCCCHHHHHHCCCCCCCCC
T ss_conf 4368770586158733798465423150256889
No 47
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.55 E-value=1.3e-13 Score=101.99 Aligned_cols=191 Identities=18% Similarity=0.216 Sum_probs=119.1
Q ss_pred CCCCEEEECCCEEEEECCC-----CHHHHHHHHCCCHHHHHHHHHHH-CC---C--CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5344487227502652452-----00278874122327788876520-24---4--100123455687642004568988
Q gi|254780960|r 78 RRKNLLIADMDSTMIEQEC-----IDELADLIGIKEKVSLITARAMN-GE---I--PFQDSLRERISLFKGTSTKIIDSL 146 (297)
Q Consensus 78 ~~~~l~~~d~d~tli~~~~-----l~~~a~~~~~~~~~~~~~~~~~~-~~---~--~~~~~~~~~~~~~~~~~~~~~~~~ 146 (297)
+.++.++||+||||++.+. +.......|.............. +. + .+..........+...-...+...
T Consensus 2 ~~pKaViFDlDGTLvDS~~~~~~~~~~~l~~~g~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 81 (221)
T PRK13226 2 RFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGSRAMLAVAFAELDAAARQALVPEFLQRYEAL 81 (221)
T ss_pred CCCEEEEEECCCCHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99859999187864518999999999999988699999999999952348888751034689999999999999999997
Q ss_pred HHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 74211345433899999984198699981672342232265508641343101000000000015631052113887753
Q gi|254780960|r 147 LEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLE 226 (297)
Q Consensus 147 ~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 226 (297)
......+.||+.++++.|++.|+++.++|+.+...++.+-+++|+.+.+......++. ..+.-.|+....
T Consensus 82 ~~~~~~l~pGv~e~L~~L~~~g~~~~VvTnk~~~~~~~~l~~~gl~~~F~~iv~~ddv----------~~~KP~Pd~~l~ 151 (221)
T PRK13226 82 IGTQSQLFDGVEMMLARLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTL----------AERKPHPLPLLT 151 (221)
T ss_pred HHCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCCCC----------CCCCCCHHHHHH
T ss_conf 6214864567999999999779908985598188899999983985223300014445----------677888699999
Q ss_pred HHHHHCCCCCEEEEEECCCCHHHHHHHCCCE-EEE--C--C-C-HHHHHHCCEEEECCC
Q ss_conf 2331037766799997892348899848931-898--7--9-5-789985898995698
Q gi|254780960|r 227 AIQKLQINPEDTIAVGDGNNDLDMLRVAGYG-VAF--H--A-K-PALAKQAKIRIDHSD 278 (297)
Q Consensus 227 l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~--~--a-~-~~v~~~Ad~~~~~~d 278 (297)
.++++++..++|+||||+.+|+.+=+.||+- |+. | . . +..+..||++|+++.
T Consensus 152 a~~~lgv~p~e~v~VGDs~~Di~aA~aAG~~~I~v~~Gy~~~~~~l~~~~ad~~i~~p~ 210 (221)
T PRK13226 152 AAERIGVAPTQCVYVGDDERDILAARAAAMPSVAALWGYRLHDDDPLTWQADVLVEQPQ 210 (221)
T ss_pred HHHHHCCCHHHEEEECCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHCCCCEEECCHH
T ss_conf 99994989536888899987999999969999997789999853866659899988999
No 48
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.55 E-value=2.4e-13 Score=100.49 Aligned_cols=125 Identities=22% Similarity=0.315 Sum_probs=98.3
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 13454338999999841986999816723422322655086413431010000000000156310521138877532331
Q gi|254780960|r 151 ITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQK 230 (297)
Q Consensus 151 ~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~ 230 (297)
..+.|++.+.++.|++.|+++.++|+.....+....+.+|+..++......++ ...+.-.|+.....+++
T Consensus 81 ~~~~~gv~e~L~~L~~~g~~l~ivTn~~~~~~~~~l~~~gl~~~Fd~iv~~dd----------v~~~KP~P~~~~~a~~~ 150 (214)
T PRK13288 81 VEEYETVYETLQTLKKQGYKLGIVTTKARDTVEMGLKLTGLDKFFDVVVTLDD----------VEHAKPDPEPVQKALEL 150 (214)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCC----------CCCCCCCHHHHHHHHHH
T ss_conf 86374799999999977992677535756999999997222144315786133----------44569879999999999
Q ss_pred HCCCCCEEEEEECCCCHHHHHHHCCCE---EEEC--CCHHHH-HHCCEEEECCCHHHHHHHCC
Q ss_conf 037766799997892348899848931---8987--957899-85898995698327678709
Q gi|254780960|r 231 LQINPEDTIAVGDGNNDLDMLRVAGYG---VAFH--AKPALA-KQAKIRIDHSDLEALLYIQG 287 (297)
Q Consensus 231 ~~~~~~~v~avGDg~ND~pmL~~AgvG---VA~~--a~~~v~-~~Ad~~~~~~dl~~~l~~~g 287 (297)
++.+.++|++|||+.+|+.+=+.||+- |.++ ..+... ..||++++ ++..|+-+|+
T Consensus 151 l~~~p~e~l~VGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~~~ad~vi~--~~~eL~~il~ 211 (214)
T PRK13288 151 LGAKPEEALMVGDNYHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLD--KMSDLLAIVG 211 (214)
T ss_pred HCCCCCCEEEEECCHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEC--CHHHHHHHHH
T ss_conf 395978689996898999999995995999938999876797689999989--9999999998
No 49
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; InterPro: IPR011863 This protein is has been characterised as both a phosphoserine phosphatase and a phosphoserine:homoserine phosphotransferase . In Pseudomonas aeruginosa, where the characterization was done, a second phosphoserine phosphatase (SerB) and a second homoserine kinase (thrB) are found, but in Fibrobacter succinogenes neither are present. .
Probab=99.55 E-value=4.6e-14 Score=104.84 Aligned_cols=173 Identities=21% Similarity=0.380 Sum_probs=137.2
Q ss_pred CEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCHH
Q ss_conf 4487227502652452002788741223277888765202441001234556876420045--68988742113454338
Q gi|254780960|r 81 NLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTK--IIDSLLEKKITYNPGGY 158 (297)
Q Consensus 81 ~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 158 (297)
.+++.|++|.|. .|.|=..|+..|+.. .+...+...+|+-.+..|+.+++..... -..+.++ ...+-+|++
T Consensus 2 ~~~~LDLEGVL~-PEIWIA~AEKTGI~~-----L~~TTRDIPDYDVLMK~R~~IL~~~~~KL~DIQ~VIA-~L~~L~GA~ 74 (203)
T TIGR02137 2 EVVTLDLEGVLV-PEIWIAVAEKTGIDD-----LKLTTRDIPDYDVLMKQRLKILDRENLKLSDIQEVIA-TLKLLDGAV 74 (203)
T ss_pred EEEEEECCCCCC-CHHHHHHHHHCCHHH-----HHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH-HCCCCCHHH
T ss_conf 268863265101-235433410025366-----5310378984344655566554215871245688876-156320268
Q ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHH-HCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 999999841986999816723422322655086413431010000-0000001563105211388775323310377667
Q gi|254780960|r 159 ELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKD-DRLTGQVMEPIIDGTAKSQILLEAIQKLQINPED 237 (297)
Q Consensus 159 ~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~ 237 (297)
+-+++|+.. .+|+++|..|.+|+.|+.+.+||+..+|..+.+++ +...|.-....-.+...+.+++.|-- +
T Consensus 75 ~F~D~LR~~-~QV~ILSDTF~EF~~P~M~~LGFPT~lCH~L~~~~sD~~~GY~LR~~D~K~~~V~~l~~L~y-------~ 146 (203)
T TIGR02137 75 DFVDTLRDR-AQVVILSDTFYEFAYPLMKNLGFPTLLCHKLVVDDSDRVKGYQLRQKDQKRKVVKALKELYY-------K 146 (203)
T ss_pred HHHHHHHHH-CCEEEEECCCHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCC-------E
T ss_conf 998866541-20678703304543588874588503310035528870431221466733689998874030-------5
Q ss_pred EEEEECCCCHHHHHHHCCCEEEECCCHHHHH
Q ss_conf 9999789234889984893189879578998
Q gi|254780960|r 238 TIAVGDGNNDLDMLRVAGYGVAFHAKPALAK 268 (297)
Q Consensus 238 v~avGDg~ND~pmL~~AgvGVA~~a~~~v~~ 268 (297)
|+|-|||+||-.||+.|+-|+-|+|.+.+-.
T Consensus 147 V~A~G~SyNDT~ML~~A~~G~lF~AP~~~~~ 177 (203)
T TIGR02137 147 VIAAGDSYNDTTMLKEADKGILFHAPDSVVA 177 (203)
T ss_pred EEEECCCCCHHHHHHHHCCCCEEECCHHHHH
T ss_conf 7860477212457887628705527547863
No 50
>PRK13228 consensus
Probab=99.55 E-value=3.8e-13 Score=99.24 Aligned_cols=125 Identities=22% Similarity=0.254 Sum_probs=96.0
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 11345433899999984198699981672342232265508641343101000000000015631052113887753233
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQ 229 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~ 229 (297)
...+.|++.++++.|+..|+++.++|+.....+..+.+.+|+..++......++ ...+.-.|+.....++
T Consensus 94 ~~~~~pG~~e~L~~L~~~g~~l~ivT~~~~~~~~~~l~~~gl~~~Fd~iv~~d~----------v~~~KP~P~~~l~a~~ 163 (232)
T PRK13228 94 HTRPYPGVEAGLALLKALGYRLACITNKPEILAVPLLKQTGLADYFELILGGDS----------LPEKKPDPLPLLHACE 163 (232)
T ss_pred HCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEECCC----------CCCCCCCHHHHHHHHH
T ss_conf 086085799999999977996899808968999998753023333105530433----------6788987999999999
Q ss_pred HHCCCCCEEEEEECCCCHHHHHHHCCCE-EEE--C--CCHHHHH-HCCEEEECCCHHHHHHHC
Q ss_conf 1037766799997892348899848931-898--7--9578998-589899569832767870
Q gi|254780960|r 230 KLQINPEDTIAVGDGNNDLDMLRVAGYG-VAF--H--AKPALAK-QAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 230 ~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~--~--a~~~v~~-~Ad~~~~~~dl~~~l~~~ 286 (297)
+++++.++|++|||+.+|+.+=+.||+- |++ + ..+.+++ .||++++ ++..|+-+|
T Consensus 164 ~lg~~p~~~v~VgDs~~di~aA~~AGi~~i~V~~G~~~~~~l~~~~ad~vv~--~l~el~~lL 224 (232)
T PRK13228 164 VLGIDPANMVLVGDSANDVIAARAAGCPVFCVPYGYADGHGLAALDCDAIVD--SLPEAYALL 224 (232)
T ss_pred HHCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEC--CHHHHHHHH
T ss_conf 9297934089884888799999995993999879999977898789999999--999999997
No 51
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.50 E-value=1.4e-12 Score=95.69 Aligned_cols=125 Identities=28% Similarity=0.386 Sum_probs=99.4
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 13454338999999841986999816723422322655086413431010000000000156310521138877532331
Q gi|254780960|r 151 ITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQK 230 (297)
Q Consensus 151 ~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~ 230 (297)
..+.|++.+++..+++.|++..++|+.+...++.+.+.+|+..++......++ .....-.|..+..++.+
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~----------~~~~KP~P~~l~~~~~~ 157 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDD----------VPPPKPDPEPLLLLLEK 157 (220)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCC----------CCCCCCCHHHHHHHHHH
T ss_conf 66789899999999867991899948966799999997397554007983577----------88899886999999998
Q ss_pred HCCCCCEEEEEECCCCHHHHHHHCC---CEEEECC--CHHHH-HHCCEEEECCCHHHHHHHCC
Q ss_conf 0377667999978923488998489---3189879--57899-85898995698327678709
Q gi|254780960|r 231 LQINPEDTIAVGDGNNDLDMLRVAG---YGVAFHA--KPALA-KQAKIRIDHSDLEALLYIQG 287 (297)
Q Consensus 231 ~~~~~~~v~avGDg~ND~pmL~~Ag---vGVA~~a--~~~v~-~~Ad~~~~~~dl~~~l~~~g 287 (297)
++.+.++++||||+.+|+.|=+.|| +||.++. .+... ..+|++++ ++..|+..+.
T Consensus 158 ~~~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~--~~~el~~~l~ 218 (220)
T COG0546 158 LGLDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVID--SLAELLALLA 218 (220)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCEEEC--CHHHHHHHHH
T ss_conf 099975389982789999999987996799835888744023338987988--9999998862
No 52
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.50 E-value=5.3e-13 Score=98.34 Aligned_cols=202 Identities=18% Similarity=0.191 Sum_probs=145.5
Q ss_pred CCEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 44487227502652452002788741223277888765202441001234556876420045689887421134543389
Q gi|254780960|r 80 KNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYE 159 (297)
Q Consensus 80 ~~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (297)
+..+..|+|||++.+.+.+.+.+..+... -.++..++..+.+.+.+.+.+....+...........+....+++|+-.+
T Consensus 2 ~~~if~DFDGTIT~~D~~~~ll~~fa~~~-w~~i~~~~~~g~is~re~~~~~~~~i~~~~~~e~~~~l~~~~~idpgF~e 80 (219)
T PRK09552 2 SIQVFCDFDGTITNNDNIISIMEKFAPPE-AEELKDRILSQELSIQEGVGQMFQLLPTNLKDEIIQFLLETAEIRNGFHE 80 (219)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHCHHH-HHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHH
T ss_conf 71899448988772063899999859298-99999999819866999999999847886278999999956996867999
Q ss_pred HHHHHHHCCCEEEEEECCCHHHHHHHHHHHCC-CHHHHHCCCCHHHCCCCCCCCC------CCCHHHHHHHHHHHHHHHC
Q ss_conf 99999841986999816723422322655086-4134310100000000001563------1052113887753233103
Q gi|254780960|r 160 LVHTMKQNGASTLLVTGGFSIFARFIAQHLGF-DQYYANRFIEKDDRLTGQVMEP------IIDGTAKSQILLEAIQKLQ 232 (297)
Q Consensus 160 ~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi-~~~~a~~~~~~~~~~~~~~~~~------~~~~~~k~~~~~~l~~~~~ 232 (297)
.++.+++.|+.++++|+|...+++++-+.+.. ..+++|...+.+....-.+... .-.+.+|...++. +.
T Consensus 81 F~~~~~~~~ip~~IvS~G~d~~I~~~L~~~~~~~~I~aN~~~~~~~~i~~~~p~~~~~~c~~~~G~cK~~~i~~----~~ 156 (219)
T PRK09552 81 FVQFVNENNISFYVISGGMDFFVYPLLQGLIPKEQIYCNETDFSNEYITINWPHPCDGHCQNHCGCCKSSLIRK----LS 156 (219)
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHH----HH
T ss_conf 99999985997999879946999999996088774896356873984689457878654567778545999997----53
Q ss_pred CCCCEEEEEECCCCHHHHHHHCCCEEEEC-CCHHHHHHCCEEEECCCHHHHHHHC
Q ss_conf 77667999978923488998489318987-9578998589899569832767870
Q gi|254780960|r 233 INPEDTIAVGDGNNDLDMLRVAGYGVAFH-AKPALAKQAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 233 ~~~~~v~avGDg~ND~pmL~~AgvGVA~~-a~~~v~~~Ad~~~~~~dl~~~l~~~ 286 (297)
.+...++++|||+.|++|-+.||+=.|=+ =.+..++.---.+-+.++.+++-.|
T Consensus 157 ~~~~~~i~iGDG~SD~~aA~~aD~vFAr~~L~~~c~~~gip~~~F~~F~DI~~~l 211 (219)
T PRK09552 157 DTNDFHIVIGDSITDLQAAKQADKVFARDFLITKCEENHISYTPFETFHDVQTEL 211 (219)
T ss_pred CCCCEEEEEECCHHHHHHHHHCCEEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 3698699983882555588746843507799999998599963439999999999
No 53
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.49 E-value=3.8e-13 Score=99.26 Aligned_cols=200 Identities=16% Similarity=0.206 Sum_probs=143.4
Q ss_pred EEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 48722750265245200278874122327788876520244100123455687642004568988742113454338999
Q gi|254780960|r 82 LLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELV 161 (297)
Q Consensus 82 l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 161 (297)
+++.|.|||++.+.+.+.+.+..+... -.++..++..+.+.+.+.+.+....+................+++|+-.+.+
T Consensus 1 ~If~DFDGTIT~~D~~~~il~~fa~~~-~~~i~~~~~~g~is~re~~~~~~~~l~~~~~~e~~~~l~~~~~idpgF~eF~ 79 (214)
T TIGR03333 1 FIICDFDGTITNNDNIISIMKQFAPPE-WEALKDGVLSKTLSIQEGVGRMFGLLPSSLKEEITSFVLETAEIREGFREFV 79 (214)
T ss_pred CEEECCCCCCCCCHHHHHHHHHHCCHH-HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 978368998783055999999858488-9999999981986599999999983788727999999985598685799999
Q ss_pred HHHHHCCCEEEEEECCCHHHHHHHHHHHC-CCHHHHHCCCCHHHCCCCCCCCC------CCCHHHHHHHHHHHHHHHCCC
Q ss_conf 99984198699981672342232265508-64134310100000000001563------105211388775323310377
Q gi|254780960|r 162 HTMKQNGASTLLVTGGFSIFARFIAQHLG-FDQYYANRFIEKDDRLTGQVMEP------IIDGTAKSQILLEAIQKLQIN 234 (297)
Q Consensus 162 ~~l~~~g~~v~iisg~~~~~~~~ia~~lg-i~~~~a~~~~~~~~~~~~~~~~~------~~~~~~k~~~~~~l~~~~~~~ 234 (297)
+.+++.|+.++++|+|...+++++-+.+. -..+++|...+.+....-....+ .-.+..|...++ ++..+
T Consensus 80 ~~~~~~~ip~~IvS~G~d~~I~~lL~~~~~~~~i~an~~~~~~~~i~~~~p~~~~~~c~~~~G~cK~~~i~----~~~~~ 155 (214)
T TIGR03333 80 AFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSLIR----KLSEP 155 (214)
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHH----HHHCC
T ss_conf 99998599789986993389999999637876679704675098778946788876566755744499999----74167
Q ss_pred CCEEEEEECCCCHHHHHHHCCCEEEEC-CCHHHHHHCCEEEECCCHHHHHHHC
Q ss_conf 667999978923488998489318987-9578998589899569832767870
Q gi|254780960|r 235 PEDTIAVGDGNNDLDMLRVAGYGVAFH-AKPALAKQAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 235 ~~~v~avGDg~ND~pmL~~AgvGVA~~-a~~~v~~~Ad~~~~~~dl~~~l~~~ 286 (297)
...++++|||..|++|-+.||+=.|=+ =.+..++.---.+.+.++.+++-.|
T Consensus 156 ~~~~i~iGDG~SD~~aA~~aD~vFAk~~L~~~c~~~gip~~~F~~F~DI~~~l 208 (214)
T TIGR03333 156 NDYHIVIGDSVTDVEAAKQSDLCFARDYLLNECEELGLNHAPFQDFYDVRKEL 208 (214)
T ss_pred CCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 98499982875656899857922017899999998599974538999999999
No 54
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.49 E-value=7.4e-13 Score=97.48 Aligned_cols=188 Identities=16% Similarity=0.193 Sum_probs=119.7
Q ss_pred CCCCCCEEEECCCEEEEECCCCH-----HHHHHHHCCCHHHHHHHHHHHCCCCCHHH---HHHHH--------HHHHHHH
Q ss_conf 55534448722750265245200-----27887412232778887652024410012---34556--------8764200
Q gi|254780960|r 76 ENRRKNLLIADMDSTMIEQECID-----ELADLIGIKEKVSLITARAMNGEIPFQDS---LRERI--------SLFKGTS 139 (297)
Q Consensus 76 ~~~~~~l~~~d~d~tli~~~~l~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~ 139 (297)
.++..+.++||+||||++.+.+. ......|.............. ..+... +..+. .......
T Consensus 3 ~p~~IkAViFD~DGTLvDSe~~~~~a~~~~~~~~g~~~~~~~~~~~~~G--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (222)
T PRK10826 3 TPRQILAAIFDMDGLLIDSEPLWQRAELDVMASLGVDISRREELPDTLG--LRIDQVVDLWYARQPWNGPDRQEVVQRII 80 (222)
T ss_pred CCCCCCEEEECCCCCHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 9987718999994973348999999999999987989997999999719--88999999999867888988999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHH
Q ss_conf 45689887421134543389999998419869998167234223226550864134310100000000001563105211
Q gi|254780960|r 140 TKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTA 219 (297)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 219 (297)
...........++.|++.++++.|++.|+++.++|+.+...++.+-+.+|+.+++......++ ...+.-
T Consensus 81 -~~~~~~~~~~~~~~pGv~e~L~~l~~~g~~l~i~Ts~~~~~~~~~L~~~gl~~~Fd~iv~~dd----------v~~~KP 149 (222)
T PRK10826 81 -ARVISLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMLDLRDYFDALASAEK----------LPYSKP 149 (222)
T ss_pred -HHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCC----------CCCCCC
T ss_conf -999999862698186699999999977997588628848999999987499641105763532----------567799
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCE-EEE-C--C-CHHHHHHCCEEEEC
Q ss_conf 38877532331037766799997892348899848931-898-7--9-57899858989956
Q gi|254780960|r 220 KSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG-VAF-H--A-KPALAKQAKIRIDH 276 (297)
Q Consensus 220 k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~-~--a-~~~v~~~Ad~~~~~ 276 (297)
.|+.....+++++.+.++|++|||+.+|+.+=+.||+- ||+ + . .+.-...||+++++
T Consensus 150 ~Pe~yl~A~~~lg~~p~e~lvveDS~~gi~aA~~AGm~~v~v~~~~~~~~~~~~~Ad~v~~~ 211 (222)
T PRK10826 150 HPEVYLNCAAKLGVDPLTCVALEDSFNGLIAAKAARMRSIVVPAPEQRNDPRWALAHVQLES 211 (222)
T ss_pred CHHHHHHHHHHHCCCHHHEEEECCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEECC
T ss_conf 84999999999598988968783899999999987997999899888664120468989799
No 55
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V); InterPro: IPR006544 These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V .; GO: 0016887 ATPase activity, 0006812 cation transport, 0016021 integral to membrane.
Probab=99.45 E-value=4.9e-14 Score=104.67 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=111.0
Q ss_pred HCCCHHHHHHHHHHHCCCCCHHHHHHHHH-HH-----------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf 12232778887652024410012345568-76-----------4200456898874211345433899999984198699
Q gi|254780960|r 105 GIKEKVSLITARAMNGEIPFQDSLRERIS-LF-----------KGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTL 172 (297)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~ 172 (297)
.+-....+......+.+..+.+...+.+. .. .-+.+..+.|++-..-++++...++++.|++..++++
T Consensus 713 ~vP~d~~~~~~~~t~~G~RviAlA~K~Lpt~~~~~~~~~l~Rd~vEsnl~f~Gf~v~~n~LK~~t~~Vi~~L~~a~~r~v 792 (1350)
T TIGR01657 713 TVPSDYQEVLKSYTREGYRVIALASKELPTKLTLQKAQDLSRDAVESNLTFLGFIVFENPLKPDTKEVIKELKRANIRTV 792 (1350)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEE
T ss_conf 68654899999998579879998035788877778875078658412300113256645886133799999973787489
Q ss_pred EEECCCHHHHHHHHHHHCCCHH----H-----------HHCCCCH--HH-C-----------------------------
Q ss_conf 9816723422322655086413----4-----------3101000--00-0-----------------------------
Q gi|254780960|r 173 LVTGGFSIFARFIAQHLGFDQY----Y-----------ANRFIEK--DD-R----------------------------- 205 (297)
Q Consensus 173 iisg~~~~~~~~ia~~lgi~~~----~-----------a~~~~~~--~~-~----------------------------- 205 (297)
|||||+..|+-++|+++|+-.- + .+...+. +. .
T Consensus 793 miTGDn~lTav~VA~e~g~v~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~s~~~evieddasvsismCsstWkGsse~~~ 872 (1350)
T TIGR01657 793 MITGDNLLTAVSVARECGIVEPSNVLILAEAEPPESGKPAQIKFEVIDSNSSSDEVIEDDASVSISMCSSTWKGSSETQV 872 (1350)
T ss_pred EEECCCHHHHHHHHHCEEEECCCCEEEECCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCC
T ss_conf 98288636863122100122588606872467888887755788857887650122003550478750243457654676
Q ss_pred --C-CCC------------------------------------------------------------------CCCCCCC
Q ss_conf --0-000------------------------------------------------------------------1563105
Q gi|254780960|r 206 --L-TGQ------------------------------------------------------------------VMEPIID 216 (297)
Q Consensus 206 --~-~~~------------------------------------------------------------------~~~~~~~ 216 (297)
. ... .....++
T Consensus 873 ~~~~~~~~~~P~~~~~~S~~~~~~~~~y~La~~G~~~~~l~~~~~~~~~sfkPeWvkmqDksvqkii~~~~~ll~~~~VF 952 (1350)
T TIGR01657 873 IPIASTQVEIPVKLGKDSYLEDLLASRYHLALSGKAFAVLQAHSPTDHISFKPEWVKMQDKSVQKIIELLLKLLLHTTVF 952 (1350)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEECCHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCEE
T ss_conf 23334531167744212532013422665122438999999756888501176424411147899999998775427178
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE-CC
Q ss_conf 21138877532331037766799997892348899848931898-79
Q gi|254780960|r 217 GTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HA 262 (297)
Q Consensus 217 ~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~-~a 262 (297)
++-.|+.|..++..++.-.-.|.|+|||.||-.|||+||+|||. +|
T Consensus 953 ARmaP~QK~~lv~~Lq~~dy~V~MCGDGANDcgALK~AdVGiSLs~~ 999 (1350)
T TIGR01657 953 ARMAPDQKETLVELLQKLDYTVGMCGDGANDCGALKQADVGISLSEA 999 (1350)
T ss_pred EEECHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHC
T ss_conf 96181789999999986298999862881478999622045515406
No 56
>pfam00702 Hydrolase haloacid dehalogenase-like hydrolase. This family are structurally different from the alpha/ beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of (S)-2-haloacid dehalogenase from Pseudomonas sp. CBS3. The rest of the fold is composed of the core alpha/beta domain.
Probab=99.44 E-value=2.5e-12 Score=94.26 Aligned_cols=98 Identities=28% Similarity=0.419 Sum_probs=80.9
Q ss_pred HHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 42113454338999999841986999816723422322655086413431010000000000156310521138877532
Q gi|254780960|r 148 EKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEA 227 (297)
Q Consensus 148 ~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l 227 (297)
....++.+++.++++.|+++|+++.++|++....+..+.+.+|+...+......... .....+++.....
T Consensus 93 ~~~~~~~~~~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----------~~~Kp~~~~~~~~ 162 (190)
T pfam00702 93 ALADKLYPGAREALKALKERGIKVAILTNGDRANAEAVLEALGLADLFDVIVDSDDV----------GPVKPKPEIFLKA 162 (190)
T ss_pred HCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCHHHCCCCCCCCCC----------CCCCCCHHHHHHH
T ss_conf 406984807999999999879907874599879999999862607641000022001----------2679999999999
Q ss_pred HHHHCCCCCEEEEEECCCCHHHHHHHCC
Q ss_conf 3310377667999978923488998489
Q gi|254780960|r 228 IQKLQINPEDTIAVGDGNNDLDMLRVAG 255 (297)
Q Consensus 228 ~~~~~~~~~~v~avGDg~ND~pmL~~Ag 255 (297)
+++++.+.++|+||||+.||++|.+.||
T Consensus 163 ~~~l~~~~~~~~~iGD~~~d~~a~~~aG 190 (190)
T pfam00702 163 LERLGVKPEEVLMVGDGVNDAPALAAAG 190 (190)
T ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHHC
T ss_conf 9994899996999889988999999609
No 57
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.44 E-value=4.9e-12 Score=92.45 Aligned_cols=191 Identities=18% Similarity=0.250 Sum_probs=112.8
Q ss_pred CEEEECCCEEEEECCCC-----HHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH----------HHHHHHHHHHH
Q ss_conf 44872275026524520-----0278874122327788876520244100123455687----------64200456898
Q gi|254780960|r 81 NLLIADMDSTMIEQECI-----DELADLIGIKEKVSLITARAMNGEIPFQDSLRERISL----------FKGTSTKIIDS 145 (297)
Q Consensus 81 ~l~~~d~d~tli~~~~l-----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 145 (297)
++++||+||||++.+.. .......|....-.+.....+. ......+...... ........+..
T Consensus 2 kaViFD~DGTLvDs~~~~~~a~~~~~~~~G~~~~~~~~~~~~~G--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (220)
T TIGR03351 2 SLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMG--QSKIEAIRALLALDGADEAEAQAAFADFEERLAE 79 (220)
T ss_pred EEEEEECCCCHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC--CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 79999387767758999999999999987889898999998359--9899999999876499989999999999999999
Q ss_pred HHH-HHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCC--HHHHHCCCCHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 874-21134543389999998419869998167234223226550864--134310100000000001563105211388
Q gi|254780960|r 146 LLE-KKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFD--QYYANRFIEKDDRLTGQVMEPIIDGTAKSQ 222 (297)
Q Consensus 146 ~~~-~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~--~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~ 222 (297)
... ....+.||+.++++.|+++|+++.++|+.....++.+-+.+|+. +.+......++ ...+.-.|+
T Consensus 80 ~~~~~~~~~~pG~~elL~~L~~~gi~~av~T~~~~~~~~~~l~~~g~~~~~~fd~vv~~~d----------v~~~KP~Pd 149 (220)
T TIGR03351 80 AYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSD----------VAAGRPAPD 149 (220)
T ss_pred HHHCCCCEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCHHHHCCCCCCCCC----------CCCCCCCHH
T ss_conf 9861898067119999999998799776635997799999999827640432240456343----------566798789
Q ss_pred HHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHCCCE--EEE--C--CCHHHH-HHCCEEEECCCHHHHHHH
Q ss_conf 775323310377-66799997892348899848931--898--7--957899-858989956983276787
Q gi|254780960|r 223 ILLEAIQKLQIN-PEDTIAVGDGNNDLDMLRVAGYG--VAF--H--AKPALA-KQAKIRIDHSDLEALLYI 285 (297)
Q Consensus 223 ~~~~l~~~~~~~-~~~v~avGDg~ND~pmL~~AgvG--VA~--~--a~~~v~-~~Ad~~~~~~dl~~~l~~ 285 (297)
.....+++++.. .++|+++||+.||+.+=+.||+. |++ + ..+.++ .-||+++. ++..|+-+
T Consensus 150 ~~l~a~~~lg~~~~~~~~vigDs~~di~aA~~AG~~~~igv~~G~~~~~~L~~~gad~v~~--~~~eL~~~ 218 (220)
T TIGR03351 150 LILRAMELTGVQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLD--SVADLPAL 218 (220)
T ss_pred HHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCEEEC--CHHHHHHH
T ss_conf 9999999958896433135378788999999859987999838999999998789999999--99999886
No 58
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.42 E-value=5.8e-13 Score=98.13 Aligned_cols=137 Identities=22% Similarity=0.256 Sum_probs=109.2
Q ss_pred CCCCEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 53444872275026524520027887412232778887652024410012345568764200456898874211345433
Q gi|254780960|r 78 RRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGG 157 (297)
Q Consensus 78 ~~~~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (297)
+..++++||+||+|+++...- .+.- ........+.+
T Consensus 22 ~~IKl~i~DvDGVLTDG~i~~--------------------------~~~G-----------------~e~k~f~~~DG- 57 (186)
T PRK09484 22 ENIKLLICDVDGVFSDGLIYM--------------------------GNNG-----------------EELKAFNTRDG- 57 (186)
T ss_pred HCCCEEEECCEECEECCCEEE--------------------------CCCC-----------------CEEEEEECCHH-
T ss_conf 689899984716407890898--------------------------7999-----------------79999975275-
Q ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 89999998419869998167234223226550864134310100000000001563105211388775323310377667
Q gi|254780960|r 158 YELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPED 237 (297)
Q Consensus 158 ~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~ 237 (297)
-.++.+++.|+++.+|||.....++.-++++|+.+++.. ...|.+.+..++++++++.++
T Consensus 58 -~gi~~l~~~Gi~v~iISg~~s~~v~~Ra~~Lgi~~~~~g-------------------~~dK~~~l~~l~~~~gl~~ee 117 (186)
T PRK09484 58 -YGIRCLLTSGIEVAIITGRKSKIVEDRMTTLGITHIYQG-------------------QSNKLIAYSDLLEKLAIAPEQ 117 (186)
T ss_pred -HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCEEEEC-------------------HHHHHHHHHHHHHHHCCCHHH
T ss_conf -999999987996999947888899999996189889937-------------------076999999999980989999
Q ss_pred EEEEECCCCHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECCC
Q ss_conf 99997892348899848931898-795789985898995698
Q gi|254780960|r 238 TIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSD 278 (297)
Q Consensus 238 v~avGDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~d 278 (297)
|+.+||..||+|+|+.+|++++. +|.|.|++.||+++..+.
T Consensus 118 vayiGDDi~Dl~~m~~vGls~~P~DA~~~Vk~~ad~Vt~~~G 159 (186)
T PRK09484 118 VAYIGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAG 159 (186)
T ss_pred EEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHHCCEECCCCC
T ss_conf 152068722699998769521666407999986889857988
No 59
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase; InterPro: IPR006539 These sequences represent the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other . These ATPases are found only in eukaryotes. ; GO: 0000287 magnesium ion binding, 0004012 phospholipid-translocating ATPase activity, 0005524 ATP binding, 0015914 phospholipid transport, 0016021 integral to membrane.
Probab=99.39 E-value=5.4e-13 Score=98.28 Aligned_cols=149 Identities=20% Similarity=0.232 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCH-------------------------
Q ss_conf 0456898874211345433899999984198699981672342232265508641-------------------------
Q gi|254780960|r 139 STKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ------------------------- 193 (297)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~------------------------- 193 (297)
.+..+.+.-+..|.+.+|+++.|+.|+.+|+|++|+|||..+||-.|+-...+-.
T Consensus 778 ~~L~LlG~TAiEDkLQ~gVP~tIe~L~~AGIKiWVLTGDK~ETAInIg~Sc~Ll~~~M~~~~i~~~sd~I~~~E~~~~~~ 857 (1249)
T TIGR01652 778 KDLILLGATAIEDKLQEGVPETIELLREAGIKIWVLTGDKVETAINIGYSCRLLSENMELIVIKEESDDIRELEDAGDLD 857 (1249)
T ss_pred HHHHHHCCCCCCHHHCCCCHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCHH
T ss_conf 22576445320001026657799999657908999758852478899999741466866999824846899985047523
Q ss_pred --------HHHHC----CCCH-------HHC---CCCCCCCCCCCH-----------------------------HHHHH
Q ss_conf --------34310----1000-------000---000015631052-----------------------------11388
Q gi|254780960|r 194 --------YYANR----FIEK-------DDR---LTGQVMEPIIDG-----------------------------TAKSQ 222 (297)
Q Consensus 194 --------~~a~~----~~~~-------~~~---~~~~~~~~~~~~-----------------------------~~k~~ 222 (297)
...+. .... ... ........+++| ++.|.
T Consensus 858 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~h~~~~~~ALvIDG~sL~~aL~~~dl~~~fL~la~~C~aViCCRvsP~ 937 (1249)
T TIGR01652 858 ATERVVEAAIKKILKEYFELEGTEEEFNELKKDHVPSGNVALVIDGKSLKYALDEEDLEKEFLQLALKCKAVICCRVSPS 937 (1249)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCH
T ss_conf 68899999999988751364547899987225777788667998240131014700489999998650881699768823
Q ss_pred HH---HHHHHHHC-CCCCEEEEEECCCCHHHHHHHCCCEEEECC--CHHHHHHCCEEE-ECCCHHHHHHHCC
Q ss_conf 77---53233103-776679999789234889984893189879--578998589899-5698327678709
Q gi|254780960|r 223 IL---LEAIQKLQ-INPEDTIAVGDGNNDLDMLRVAGYGVAFHA--KPALAKQAKIRI-DHSDLEALLYIQG 287 (297)
Q Consensus 223 ~~---~~l~~~~~-~~~~~v~avGDg~ND~pmL~~AgvGVA~~a--~~~v~~~Ad~~~-~~~dl~~~l~~~g 287 (297)
+| .+++++.+ ....-|.|+|||.||++|++.|||||+.-+ +-++--+||+.| -+.-|..||=.=|
T Consensus 938 QKA~vv~LVK~~~G~~~~~TLAIGDGANDVSMIQ~ADVGvGI~G~EG~QA~masDfAI~QF~fL~~LLLVHG 1009 (1249)
T TIGR01652 938 QKADVVKLVKKSTGRLSKITLAIGDGANDVSMIQEADVGVGISGKEGMQAVMASDFAIGQFRFLEKLLLVHG 1009 (1249)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 468998888743798452588752777364553012243134576479999867878899886352211014
No 60
>KOG0209 consensus
Probab=99.38 E-value=3.3e-13 Score=99.61 Aligned_cols=127 Identities=19% Similarity=0.223 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHH-----------HHHCCCCH----
Q ss_conf 004568988742113454338999999841986999816723422322655086413-----------43101000----
Q gi|254780960|r 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQY-----------YANRFIEK---- 202 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~-----------~a~~~~~~---- 202 (297)
+.+..+.+.+...-|++++++..++.++..+++++|||||++.++-++++++||-.- -.+.+.+.
T Consensus 661 EsdLtFaGFlif~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~ 740 (1160)
T KOG0209 661 ESDLTFAGFLIFSCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLEWVSVDG 740 (1160)
T ss_pred HHCCEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHEEHHEEEEECCCCEEECCCCCCCCCEEEEECCCC
T ss_conf 31224410699967888127999999865685389993798420101001100340672354057667786026753787
Q ss_pred -------HH------------CCCCC--------------CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf -------00------------00000--------------1563105211388775323310377667999978923488
Q gi|254780960|r 203 -------DD------------RLTGQ--------------VMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLD 249 (297)
Q Consensus 203 -------~~------------~~~~~--------------~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~p 249 (297)
.+ ..+|. ....-++++..|.++..++..++..+..+.|.|||.||..
T Consensus 741 t~~lp~~p~~~~~~l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK~~Gy~TLMCGDGTNDVG 820 (1160)
T KOG0209 741 TIVLPLKPGKKKTLLAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLKKLGYVTLMCGDGTNDVG 820 (1160)
T ss_pred CEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHCCEEEEEECCCCCCHH
T ss_conf 36604798863034565530300416899886327999864232688861705678999999862808999469985210
Q ss_pred HHHHCCCEEEE-CCCH
Q ss_conf 99848931898-7957
Q gi|254780960|r 250 MLRVAGYGVAF-HAKP 264 (297)
Q Consensus 250 mL~~AgvGVA~-~a~~ 264 (297)
+||+|.+|||. |+.+
T Consensus 821 ALK~AhVGVALL~~~~ 836 (1160)
T KOG0209 821 ALKQAHVGVALLNNPE 836 (1160)
T ss_pred HHHHCCCCEEHHCCCH
T ss_conf 2331450200123974
No 61
>pfam06888 Put_Phosphatase Putative Phosphatase. This family contains a number of putative eukaryotic acid phosphatases. Some family members represent the products of the PSI14 phosphatase family in Lycopersicon esculentum (Tomato).
Probab=99.32 E-value=2.9e-11 Score=87.75 Aligned_cols=176 Identities=22% Similarity=0.309 Sum_probs=124.5
Q ss_pred EEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 48722750265245200278874122327788876520244100123455687642--0045689887421134543389
Q gi|254780960|r 82 LLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKG--TSTKIIDSLLEKKITYNPGGYE 159 (297)
Q Consensus 82 l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 159 (297)
+++||+|.|+|++++-.++.+..+....-..+ ...+ ....|.+++.+....+.. .........+ ...|+.|++.+
T Consensus 2 LvvFDFD~TIid~nSD~~V~~~l~~~~~~~~L-~~~~-~~~~Wt~~M~~vl~~Lh~~g~t~~~I~~~l-~~iP~~pgm~~ 78 (234)
T pfam06888 2 LVVFDFDKTIIDVDSDNWVVDELPTTQLFEQL-RPTM-PKGFWNELMDRVMKELHDQGVSIADIKAVL-RSIPLVPGMVR 78 (234)
T ss_pred EEEEECCCCCCCCCCCHHHHHHCCCCHHHHHH-HHHC-CCCCCHHHHHHHHHHHHHCCCCHHHHHHHH-HCCCCCCCHHH
T ss_conf 79992898530178504579764950227999-9745-466349999999999997699999999999-74999945899
Q ss_pred HHHHHHH--CCCEEEEEECCCHHHHHHHHHHHCCCHH----HHHCCCCHH-HCCCCCCC-----CCCCCHHHHHHHHHHH
Q ss_conf 9999984--1986999816723422322655086413----431010000-00000015-----6310521138877532
Q gi|254780960|r 160 LVHTMKQ--NGASTLLVTGGFSIFARFIAQHLGFDQY----YANRFIEKD-DRLTGQVM-----EPIIDGTAKSQILLEA 227 (297)
Q Consensus 160 ~i~~l~~--~g~~v~iisg~~~~~~~~ia~~lgi~~~----~a~~~~~~~-~~~~~~~~-----~~~~~~~~k~~~~~~l 227 (297)
+++.+.+ .+..+.+||..+..|++.+-+..|+..+ +.|...+++ +.+.-... ...+..-+|+..+.++
T Consensus 79 li~~l~~~~~~~d~~IiSDaNs~FI~~iL~~~gl~~~fs~I~TNPa~~d~~G~L~v~pyh~H~C~~Cp~NmCKg~il~~~ 158 (234)
T pfam06888 79 LIKFLAKNGLGCDLIIISDANSFFIETILRAAGLHDLFSEIFTNPASVDARGRLTVLPYHDHSCNLCPSNMCKGKVLDEI 158 (234)
T ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCEEEECCCCCCCCCCCHHHCHHHHHHHH
T ss_conf 99999847678319999587077899999847925335366427874078885885277788899686331406999999
Q ss_pred HHHH---CCCCCEEEEEECCCCHH-HHHHHCCCEEEE
Q ss_conf 3310---37766799997892348-899848931898
Q gi|254780960|r 228 IQKL---QINPEDTIAVGDGNNDL-DMLRVAGYGVAF 260 (297)
Q Consensus 228 ~~~~---~~~~~~v~avGDg~ND~-pmL~~AgvGVA~ 260 (297)
..+. +...++++.+|||.||. |+++.-.--+||
T Consensus 159 ~~~~~~~g~~y~rviYvGDG~ND~CP~l~L~~~D~a~ 195 (234)
T pfam06888 159 VASQAREGVRYERVIYVGDGANDFCPSLRLRECDVAM 195 (234)
T ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCEEE
T ss_conf 9987613887146999889997748274477787788
No 62
>KOG0206 consensus
Probab=99.31 E-value=4.7e-12 Score=92.54 Aligned_cols=151 Identities=21% Similarity=0.193 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHC------------
Q ss_conf 00456898874211345433899999984198699981672342232265508641343101000000------------
Q gi|254780960|r 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDR------------ 205 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~------------ 205 (297)
+++.++.+.-+..|++..++++.++.|+++|++++++|||..++|-.|+-..++-+-.-....+....
T Consensus 637 Ek~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll~~~m~~i~i~~~~~~~~~~~~~~~~ 716 (1151)
T KOG0206 637 EKDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLLRQDMKLIIINTETSEELSSLDATAA 716 (1151)
T ss_pred HHHCHHHCCEEEECHHHCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHCCCHHHHHH
T ss_conf 73023112035514100586679999997598798875707999888887605788984479995487032032145788
Q ss_pred -----------------CCC--CCCCCCCCH----------------------------HHHHHHHHHHHHH-HCCCCCE
Q ss_conf -----------------000--015631052----------------------------1138877532331-0377667
Q gi|254780960|r 206 -----------------LTG--QVMEPIIDG----------------------------TAKSQILLEAIQK-LQINPED 237 (297)
Q Consensus 206 -----------------~~~--~~~~~~~~~----------------------------~~k~~~~~~l~~~-~~~~~~~ 237 (297)
... .....++++ +..|.++..+++- ....+..
T Consensus 717 ~~~~l~~~~~~~~~~~~~~~~~~~~aLVIDGktl~~aL~~~~~~~Fl~la~~C~sViCCR~sPlQKA~Vv~lVk~~~~~~ 796 (1151)
T KOG0206 717 LKETLLRKFTEELEEAKLEHSEKPFALVIDGKTLAYALEDELRKKFLELAKRCKSVICCRVSPLQKALVVKLVKKGLKAV 796 (1151)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCE
T ss_conf 88999876667788775235777705999888788664823677899998754678772689799989999998068852
Q ss_pred EEEEECCCCHHHHHHHCCCEEEECC--CHHHHHHCCEEEE-CCCHHHHHHHCCC
Q ss_conf 9999789234889984893189879--5789985898995-6983276787098
Q gi|254780960|r 238 TIAVGDGNNDLDMLRVAGYGVAFHA--KPALAKQAKIRID-HSDLEALLYIQGY 288 (297)
Q Consensus 238 v~avGDg~ND~pmL~~AgvGVA~~a--~~~v~~~Ad~~~~-~~dl~~~l~~~g~ 288 (297)
+.|+|||+||.+|++.|++||...+ +-.+.-.+|+.+- +.-|..||...|.
T Consensus 797 TLAIGDGANDVsMIQ~AhVGVGIsG~EGmQAvmsSD~AIaqFrfL~rLLLVHGh 850 (1151)
T KOG0206 797 TLAIGDGANDVSMIQEAHVGVGISGQEGMQAVMSSDFAIAQFRFLERLLLVHGH 850 (1151)
T ss_pred EEEEECCCCCCHHEEECCCCEEECCCHHHHHHHCCCCHHHHHHHHHHHHEEECC
T ss_conf 798517985401214377670564532110243551058887887654156356
No 63
>PRK11587 putative phosphatase; Provisional
Probab=99.31 E-value=4.5e-11 Score=86.58 Aligned_cols=116 Identities=21% Similarity=0.279 Sum_probs=86.1
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 11345433899999984198699981672342232265508641343101000000000015631052113887753233
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQ 229 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~ 229 (297)
..++.||+.++++.|++.|+++.++|.....+.....+..++... ..+ .++. ....+.--|+.....++
T Consensus 81 ~~~~~pG~~elL~~L~~~gi~~avvTs~~~~~~~~~~~~~~l~~~--~~~------v~~d---dv~~~KP~Pd~yl~A~~ 149 (218)
T PRK11587 81 GITALPGAIALLNHLNKAGIPWAIVTSGSMPVASARHKAAGLPAP--EVF------VTAE---RVKRGKPEPDAYLLGAQ 149 (218)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCC--CEE------EECC---CCCCCCCCCHHHHHHHH
T ss_conf 983794899999999877997788726827899999972389978--699------9711---05578998689999999
Q ss_pred HHCCCCCEEEEEECCCCHHHHHHHCCCE-EEEC--CCHHHHHHCCEEEEC
Q ss_conf 1037766799997892348899848931-8987--957899858989956
Q gi|254780960|r 230 KLQINPEDTIAVGDGNNDLDMLRVAGYG-VAFH--AKPALAKQAKIRIDH 276 (297)
Q Consensus 230 ~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~~--a~~~v~~~Ad~~~~~ 276 (297)
+++.+.++|++|||+.+|+.+=+.||+- ||++ ....-.+.||.++++
T Consensus 150 ~Lg~~p~~~lvieDS~~gi~AA~~AG~~~v~V~~~~~~~~~~~Ad~vi~s 199 (218)
T PRK11587 150 LLGLAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTPRLDEVDLVLHS 199 (218)
T ss_pred HCCCCHHHEEEEECCHHHHHHHHHCCCEEEEECCCCCHHHHHCCCEEECC
T ss_conf 82989777899947788899999869989998799974576249999898
No 64
>PRK13224 consensus
Probab=99.30 E-value=5.4e-11 Score=86.09 Aligned_cols=123 Identities=20% Similarity=0.169 Sum_probs=86.6
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 11345433899999984198699981672342232265508641343101000000000015631052113887753233
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQ 229 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~ 229 (297)
...+.|++.++++.|+++|+++.++|+.+...++.+-+.+|+..++......++ .....-.|+.....++
T Consensus 84 ~~~~~pG~~e~L~~L~~~g~~laivTn~~~~~~~~~L~~~gl~~~Fd~iv~~d~----------v~~~KP~Pe~~l~a~~ 153 (216)
T PRK13224 84 LTRVYPGVEAALRHLKAEGWRLGLCTNKPVGPTRAILAHFGLAELFDVVIGGDS----------LPQRKPDPAPLRAAFA 153 (216)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCHHHCCEEECCCC----------CCCCCCCHHHHHHHHH
T ss_conf 487283799999999977996687608934778889987394432474654466----------8999999999999997
Q ss_pred HHCCCCCEEEEEECCCCHHHHHHHCCCE-EEE--CCCH-HHHH-HCCEEEECCCHHHHHHHC
Q ss_conf 1037766799997892348899848931-898--7957-8998-589899569832767870
Q gi|254780960|r 230 KLQINPEDTIAVGDGNNDLDMLRVAGYG-VAF--HAKP-ALAK-QAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 230 ~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~--~a~~-~v~~-~Ad~~~~~~dl~~~l~~~ 286 (297)
+++. +.+++|||+.+|+.+=+.||+- |++ |-++ .+.+ .++.+++ |+..|+-+|
T Consensus 154 ~l~~--~~~l~VGDs~~D~~aA~~AGi~~i~v~~Gy~~~~~~~~~~~~~i~--~~~el~~~l 211 (216)
T PRK13224 154 ALGD--EPVLYVGDSEVDAETAENAGVPFLLFTEGYRKAPVHELPHHGAFD--DHAELPDLV 211 (216)
T ss_pred HCCC--CCEEEECCCHHHHHHHHHHCCCEEEECCCCCCCCHHHCCCCCHHC--CHHHHHHHH
T ss_conf 3799--998997598878999999499889977797998967738462617--999899999
No 65
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.29 E-value=1.3e-11 Score=89.87 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=91.0
Q ss_pred HHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 42113454338999999841986999816723422322655086413431010000000000156310521138877532
Q gi|254780960|r 148 EKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEA 227 (297)
Q Consensus 148 ~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l 227 (297)
.....+-+.+.+.++.|+.. +++++-|||...+....++..|++.. .++..+-++.+..+
T Consensus 26 atgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~-------------------rv~a~a~~e~K~~i 85 (152)
T COG4087 26 ATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVE-------------------RVFAGADPEMKAKI 85 (152)
T ss_pred CCCCEECHHHHHHHHHHHHH-HEEEEECCCCCHHHHHHHHHCCCCEE-------------------EEECCCCHHHHHHH
T ss_conf 01867707557899999876-13788428732379999987399605-------------------11034678789999
Q ss_pred HHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE----CCCHHHHHHCCEEEE
Q ss_conf 331037766799997892348899848931898----795789985898995
Q gi|254780960|r 228 IQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF----HAKPALAKQAKIRID 275 (297)
Q Consensus 228 ~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~----~a~~~v~~~Ad~~~~ 275 (297)
...++.+.+.|+|+|||.||.+||+.||+||-. |+.....+.||+++.
T Consensus 86 i~eLkk~~~k~vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik 137 (152)
T COG4087 86 IRELKKRYEKVVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLK 137 (152)
T ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHCHHHHH
T ss_conf 9984477717999647752277765312314896368841677751213445
No 66
>TIGR01449 PGP_bact phosphoglycolate phosphatase, bacterial; InterPro: IPR006346 This family of sequences represent 2-phosphoglycolate phosphatase which is limited to the prokaryotes. PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. In Ralstonia eutropha and Rhodobacter sphaeroides, the PGP gene (CbbZ) is located on an operon along with other Calvin cycle enzymes including RubisCO , . The only other pertinent experimental evidence concerns the gene from Escherichia coli . The in vitro activity of the Ralstonia and Escherichia enzymes was determined with crude cell extracts of strains containing PGP on expression plasmids and compared to controls. In E. coli, however, there does not appear to be a functional Calvin cycle (RubisCO is absent), although the E. coli PGP gene (gph) is on the same operon (dam) with ribulose-5-phosphate-3-epimerase (rpe), a gene in the pentose-phosphate pathway (along with other, unrelated genes). The E. coli enzyme is not expressed under normal laboratory conditions; the pathway to which it belongs has not been determined. In fact, the possibility exists, although unlikely, that this enzyme and others within this equivalog have as their physiological substrate another, closely related molecule. The protein from Xylella fastidiosa has no experimental evidence, but is a plant pathogen and thus may obtain phosphoglycolate from its host. This model has been restricted to encompass only proteobacteria as no related PGP has been verified outside of this clade. Sequences from Aquifex aeolicus and Treponema pallidum fall between the trusted and noise cut-offs. Just below the noise cut-off is a gene which is part of the operon for the biosynthesis of the blue pigment, indigoidine, from Erwinia chrysanthemi, a plant pathogen . It does not seem likely, considering the proposed biosynthetic mechanism, that the dephosphorylation of phosphoglycolate or a closely related compound is required. Possibly, this gene is fortuitously located in this operon, or has an indirect relationship to the necessity for the biosynthesis of this compound. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes.; GO: 0008967 phosphoglycolate phosphatase activity.
Probab=99.20 E-value=1.5e-10 Score=83.38 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCC
Q ss_conf 55687642004568988742113454338999999841986999816723422322655086413431010000000000
Q gi|254780960|r 130 ERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQ 209 (297)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~ 209 (297)
+.+..+.......+.+.....-.+-|++...++.|+..|++..+||..+..++.++-..+|+..++....-.++
T Consensus 80 eq~~~l~~~F~~~Y~~~~~~~~~~FpGve~~L~aL~~~G~~lGlvTNKP~~~~~~lL~llgl~~~~~v~iGGd~------ 153 (230)
T TIGR01449 80 EQVAELVKLFLRHYEEVAGELTSVFPGVEAALEALRAKGLRLGLVTNKPEALARPLLELLGLAKYFEVLIGGDS------ 153 (230)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCHHHHHHHHHCCCC------
T ss_conf 89999999988865232105798770389999999877976888616866899999987268877511324775------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE---CCC-HHHHHHCCEEEECCCHHHHHHH
Q ss_conf 156310521138877532331037766799997892348899848931898---795-7899858989956983276787
Q gi|254780960|r 210 VMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF---HAK-PALAKQAKIRIDHSDLEALLYI 285 (297)
Q Consensus 210 ~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~---~a~-~~v~~~Ad~~~~~~dl~~~l~~ 285 (297)
+..+.-.|+-++..|+++++...+++.|||+.||+.+=++||+-+.. |-. +.--+..........+..++.+
T Consensus 154 ----~~~~KPdP~PL~~~A~~l~v~~~~~vyVGDs~~Di~AA~AAG~P~~~~~yGY~~~~~~~~~~~~~l~~~~~~l~~l 229 (230)
T TIGR01449 154 ----LAQRKPDPEPLLLAAERLGVEPAQMVYVGDSEVDIAAARAAGLPSVLLTYGYRYGEAVEELPADVLLDSLEELPDL 229 (230)
T ss_pred ----CCCCCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHCHHHHHHHHHHHHHHC
T ss_conf ----0125779747899999818850002464488789999987388543313155678785223022588749988840
Q ss_pred C
Q ss_conf 0
Q gi|254780960|r 286 Q 286 (297)
Q Consensus 286 ~ 286 (297)
|
T Consensus 230 L 230 (230)
T TIGR01449 230 L 230 (230)
T ss_pred C
T ss_conf 9
No 67
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.18 E-value=1.3e-09 Score=77.71 Aligned_cols=130 Identities=18% Similarity=0.261 Sum_probs=89.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 87421134543389999998419869998167234223226550864134310100000000001563105211388775
Q gi|254780960|r 146 LLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILL 225 (297)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 225 (297)
.......+.|++.++++.|+++|+++.+.||-+....+.+.+..+...+.-... .+.. ....++-.|..+.
T Consensus 95 ~l~~~~~piPGv~e~l~~Lr~~Gikig~~TG~~~~~~~~vl~~a~~~g~~pd~~------vs~d---dv~~grP~P~mi~ 165 (267)
T PRK13478 95 KLADYAAPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPAAAAQGYRPDHV------VATD---DVPAGRPAPWMAL 165 (267)
T ss_pred HHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEE------ECCC---CCCCCCCCHHHHH
T ss_conf 887306667449999999987498399978997899999999998559777758------5200---0799998979999
Q ss_pred HHHHHHCC-CCCEEEEEECCCCHHHHHHHCCC---EEEECC-------------------------CHHHH-HHCCEEEE
Q ss_conf 32331037-76679999789234889984893---189879-------------------------57899-85898995
Q gi|254780960|r 226 EAIQKLQI-NPEDTIAVGDGNNDLDMLRVAGY---GVAFHA-------------------------KPALA-KQAKIRID 275 (297)
Q Consensus 226 ~l~~~~~~-~~~~v~avGDg~ND~pmL~~Agv---GVA~~a-------------------------~~~v~-~~Ad~~~~ 275 (297)
+-+.++++ +.+.|+.|||+.+|+.+=+.||+ ||+.++ ....+ +-|+++|+
T Consensus 166 ~a~~~Lgv~~~~~vvkVgDT~~dI~~G~nAG~~tVGv~~~~~~~gl~~~e~~~l~~~e~~~~~~~~~~~l~~aGa~yvi~ 245 (267)
T PRK13478 166 KNVIELGVYDVAACVKVDDTVPGIEEGRNAGMWTVGLILSGNELGLTEEEYQALDAAELAARRERARAKLRAAGAHYVID 245 (267)
T ss_pred HHHHHCCCCCHHHEEEECCCHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 99998089986893777898889999997899289997056555879999984899999999999999999749998944
Q ss_pred C-CCHHHHHH
Q ss_conf 6-98327678
Q gi|254780960|r 276 H-SDLEALLY 284 (297)
Q Consensus 276 ~-~dl~~~l~ 284 (297)
+ .||-.++-
T Consensus 246 ~i~dLp~~i~ 255 (267)
T PRK13478 246 TIADLPAVIA 255 (267)
T ss_pred CHHHHHHHHH
T ss_conf 8988899999
No 68
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.16 E-value=3e-10 Score=81.52 Aligned_cols=112 Identities=26% Similarity=0.359 Sum_probs=78.9
Q ss_pred HHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHH-----CC-CCCCCCCCCCHHHHHH
Q ss_conf 21134543389999998419869998167234223226550864134310100000-----00-0001563105211388
Q gi|254780960|r 149 KKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDD-----RL-TGQVMEPIIDGTAKSQ 222 (297)
Q Consensus 149 ~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~-----~~-~~~~~~~~~~~~~k~~ 222 (297)
....+.|++.++++.+++.|+++.++|+.+...+..+.+.+++...+......... .. ............-++.
T Consensus 21 ~~~~~~pg~~e~l~~L~~~G~~v~ivTn~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~KP~~~ 100 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPD 100 (139)
T ss_pred HHCEECCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99179858999999999879979999298899999999985997775889954655300113445555554678898906
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCE-EEE
Q ss_conf 77532331037766799997892348899848931-898
Q gi|254780960|r 223 ILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG-VAF 260 (297)
Q Consensus 223 ~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~ 260 (297)
.....++.+++..++++|+||+.||+.|.+.||.- |+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~aG~~~i~V 139 (139)
T cd01427 101 KLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCEEEEC
T ss_conf 877778745868240899947888999999849989979
No 69
>KOG0210 consensus
Probab=99.15 E-value=6.2e-11 Score=85.69 Aligned_cols=165 Identities=19% Similarity=0.206 Sum_probs=103.1
Q ss_pred CCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCH----
Q ss_conf 24410012345568764--200456898874211345433899999984198699981672342232265508641----
Q gi|254780960|r 120 GEIPFQDSLRERISLFK--GTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ---- 193 (297)
Q Consensus 120 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~---- 193 (297)
..+.+..+.++.....+ -+.+..+.++-+..|.+...++..++.|+.+|++++|+|||.-+++..+|+..++..
T Consensus 624 A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGVEDkLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ 703 (1051)
T KOG0210 624 AKLSISDRDQKMANVVERYLERDLELLGLTGVEDKLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQY 703 (1051)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHEEEEEHHCCCEECCCE
T ss_conf 51751058789999999999856677631570777764527599988604848999837514320322010232106854
Q ss_pred --HHH---------HCCC---CHHH---CCCC----------------------CCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf --343---------1010---0000---0000----------------------01563105211388775323310377
Q gi|254780960|r 194 --YYA---------NRFI---EKDD---RLTG----------------------QVMEPIIDGTAKSQILLEAIQKLQIN 234 (297)
Q Consensus 194 --~~a---------~~~~---~~~~---~~~~----------------------~~~~~~~~~~~k~~~~~~l~~~~~~~ 234 (297)
++. +.+. .+.+ ...| .+......+..|++..+.+.++-
T Consensus 704 ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~G~Sl~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t--- 780 (1051)
T KOG0210 704 IHVIRSVTSRGDAHNELNNLRRKTDCALVIDGESLEFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKT--- 780 (1051)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHH---
T ss_conf 89987147723788999986267881799738337899999999999998726727997068057889999999863---
Q ss_pred CCEEEEEECCCCHHHHHHHCCCEEEECC--CHHHHHHCCEEEE-CCCHHHHHHHCC
Q ss_conf 6679999789234889984893189879--5789985898995-698327678709
Q gi|254780960|r 235 PEDTIAVGDGNNDLDMLRVAGYGVAFHA--KPALAKQAKIRID-HSDLEALLYIQG 287 (297)
Q Consensus 235 ~~~v~avGDg~ND~pmL~~AgvGVA~~a--~~~v~~~Ad~~~~-~~dl~~~l~~~g 287 (297)
+..|.|+|||=||.+|++.|++||+.-+ +..+-=+||+-|+ +.-+..||..-|
T Consensus 781 ~krvc~IGDGGNDVsMIq~A~~GiGI~gkEGkQASLAADfSItqF~Hv~rLLl~HG 836 (1051)
T KOG0210 781 GKRVCAIGDGGNDVSMIQAADVGIGIVGKEGKQASLAADFSITQFSHVSRLLLWHG 836 (1051)
T ss_pred CCEEEEECCCCCCCHHEEECCCCEEEECCCCCCCCHHCCCCHHHHHHHHHHHHCCC
T ss_conf 85689986898632102422454203216565000010555788887887761015
No 70
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily; InterPro: IPR006378 This family of sequences includes both the members of the sucrose-phosphate phosphatase (SPP) family, encompassing plants and cyanobacteria, as well as those archaeal sequences which are the closest relatives. It remains to be shown whether these archaeal sequences catalyze the same reaction as SPP. .
Probab=99.15 E-value=7.6e-11 Score=85.17 Aligned_cols=110 Identities=25% Similarity=0.272 Sum_probs=79.8
Q ss_pred EEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC---CCEEEEEECCCCH
Q ss_conf 9998167234223226550864134310100000000001563105211388775323310377---6679999789234
Q gi|254780960|r 171 TLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQIN---PEDTIAVGDGNND 247 (297)
Q Consensus 171 v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~---~~~v~avGDg~ND 247 (297)
.+|.-+-=...++.+.+.+++.= ....++..--...|.-......+..|+.+++.+++++++. .++++.+|||-||
T Consensus 118 ~~~~~~~D~~~~~~~i~~~~~~l-~~~G~~~~~Iy~SG~d~~il~~~~~KG~a~~~l~E~lg~~GkPp~~~lv~GDSeND 196 (247)
T TIGR01482 118 VKDSYGLDVDEVREVIEKLGLEL-VKVGLDVKVIYDSGFDLHILPKGVDKGKAVKYLKEKLGIKGKPPEEILVIGDSEND 196 (247)
T ss_pred EEEEECCCHHHHHHHHHHCCEEE-EEECCCEEEEEECCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf 35630458889998986052578-85356369995077540113778882489999998715688872238988178477
Q ss_pred HHHHHHC-CCEEEE-CCCHHHHHHCCEEE--ECCCHHH
Q ss_conf 8899848-931898-79578998589899--5698327
Q gi|254780960|r 248 LDMLRVA-GYGVAF-HAKPALAKQAKIRI--DHSDLEA 281 (297)
Q Consensus 248 ~pmL~~A-gvGVA~-~a~~~v~~~Ad~~~--~~~dl~~ 281 (297)
++||+.+ +.||++ ||.|.+|+.||.+. ++.+-.+
T Consensus 197 ~~lF~v~G~~~v~vaNA~~~lk~~aD~vtkd~~~~~~g 234 (247)
T TIGR01482 197 IDLFRVAGVFGVAVANAQDELKEWADLVTKDESPYGEG 234 (247)
T ss_pred HHHHHCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCC
T ss_conf 77760776317885178868887502013788856665
No 71
>KOG3120 consensus
Probab=99.14 E-value=1.7e-09 Score=76.87 Aligned_cols=180 Identities=21% Similarity=0.271 Sum_probs=125.1
Q ss_pred CCCCEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCCC
Q ss_conf 5344487227502652452002788741223277888765202441001234556876420--04568988742113454
Q gi|254780960|r 78 RRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGT--STKIIDSLLEKKITYNP 155 (297)
Q Consensus 78 ~~~~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 155 (297)
....+++||+|.|+|.+.+-+++....+.......+.... .+--|.+++.+....+... ..... ...-...|+.|
T Consensus 11 ~~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~--p~~~Wne~M~rv~k~Lheqgv~~~~i-k~~~r~iP~~P 87 (256)
T KOG3120 11 SPRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTY--PKGFWNELMDRVFKELHEQGVRIAEI-KQVLRSIPIVP 87 (256)
T ss_pred CCCEEEEEECCCEEECCCCCHHHHHHCCCCHHHHHHHHHC--CCCHHHHHHHHHHHHHHHCCCCHHHH-HHHHHCCCCCC
T ss_conf 8857999855750333776258998646204579998762--13139999999999998738899999-99985188983
Q ss_pred CHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHCCCHHHH----HCCCCHH-HCCCCCCCC------CCCCHHHHHHH
Q ss_conf 33899999984198-699981672342232265508641343----1010000-000000156------31052113887
Q gi|254780960|r 156 GGYELVHTMKQNGA-STLLVTGGFSIFARFIAQHLGFDQYYA----NRFIEKD-DRLTGQVME------PIIDGTAKSQI 223 (297)
Q Consensus 156 ~~~~~i~~l~~~g~-~v~iisg~~~~~~~~ia~~lgi~~~~a----~~~~~~~-~~~~~~~~~------~~~~~~~k~~~ 223 (297)
++.++++.+++.|. .++|||..+..|++.+-+..|+...|. |...++. +.+...... ..+..-+|+..
T Consensus 88 gmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg~V 167 (256)
T KOG3120 88 GMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKGLV 167 (256)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 48999999986788328999467443799999972579999998369766287786885458887766768356401478
Q ss_pred HHHHHHHH---CCCCCEEEEEECCCCHH-HHHHHCCCEEEE
Q ss_conf 75323310---37766799997892348-899848931898
Q gi|254780960|r 224 LLEAIQKL---QINPEDTIAVGDGNNDL-DMLRVAGYGVAF 260 (297)
Q Consensus 224 ~~~l~~~~---~~~~~~v~avGDg~ND~-pmL~~AgvGVA~ 260 (297)
+.++.... ++..+..+.+|||.||. |+++...--+||
T Consensus 168 l~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~am 208 (256)
T KOG3120 168 LDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAM 208 (256)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHCCCCCEEC
T ss_conf 99999988623775036899747987727211204674322
No 72
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.12 E-value=6.3e-11 Score=85.67 Aligned_cols=137 Identities=24% Similarity=0.341 Sum_probs=110.1
Q ss_pred CCCCEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 53444872275026524520027887412232778887652024410012345568764200456898874211345433
Q gi|254780960|r 78 RRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGG 157 (297)
Q Consensus 78 ~~~~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (297)
...+++++|+||+|+++...- .+.. ........+.|
T Consensus 6 ~~IkLli~DVDGvLTDG~ly~--------------------------~~~G-----------------ee~KaFnv~DG- 41 (170)
T COG1778 6 KNIKLLILDVDGVLTDGKLYY--------------------------DENG-----------------EEIKAFNVRDG- 41 (170)
T ss_pred HHCEEEEEECCCEEECCEEEE--------------------------CCCC-----------------CEEEEEECCCC-
T ss_conf 313289994564056674888--------------------------4897-----------------56543303576-
Q ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 89999998419869998167234223226550864134310100000000001563105211388775323310377667
Q gi|254780960|r 158 YELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPED 237 (297)
Q Consensus 158 ~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~ 237 (297)
-.++.+.+.|+++.+|||-....++.-++.+||.+++.. ...|.....++++++++..++
T Consensus 42 -~Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG-------------------~~dK~~a~~~L~~~~~l~~e~ 101 (170)
T COG1778 42 -HGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQG-------------------ISDKLAAFEELLKKLNLDPEE 101 (170)
T ss_pred -HHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEEC-------------------HHHHHHHHHHHHHHHCCCHHH
T ss_conf -999999985992899967878789999997597002424-------------------186899999999994899899
Q ss_pred EEEEECCCCHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECCC
Q ss_conf 99997892348899848931898-795789985898995698
Q gi|254780960|r 238 TIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSD 278 (297)
Q Consensus 238 v~avGDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~d 278 (297)
|+.+||-.||+|+++..|+++|. +|.|.+++.|++++..+.
T Consensus 102 ~ayiGDD~~Dlpvm~~vGls~a~~dAh~~v~~~a~~Vt~~~G 143 (170)
T COG1778 102 VAYVGDDLVDLPVMEKVGLSVAVADAHPLLKQRADYVTSKKG 143 (170)
T ss_pred HHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 402057521379999819662667657999987575445147
No 73
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.10 E-value=8.6e-10 Score=78.72 Aligned_cols=194 Identities=16% Similarity=0.213 Sum_probs=109.8
Q ss_pred CCCEEEECCCEEEEECCCCH-----HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH---------HHHHHHHHHHH
Q ss_conf 34448722750265245200-----27887412232778887652024410012345568---------76420045689
Q gi|254780960|r 79 RKNLLIADMDSTMIEQECID-----ELADLIGIKEKVSLITARAMNGEIPFQDSLRERIS---------LFKGTSTKIID 144 (297)
Q Consensus 79 ~~~l~~~d~d~tli~~~~l~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 144 (297)
..+.++||+||||++.+.+. ......|......+..... .+....+....... .+.........
T Consensus 3 ~ikaViFD~DGtLvDSe~~~~~a~~~~~~~~G~~~~~~e~~~~~--~G~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 80 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICSRAYVTMFREFGITLDLEEVFKRF--KGVKLYEIIDIISKEHGVTLAKAELEHVYRAEVA 80 (221)
T ss_pred CCCEEEECCCCCHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHC--CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999899949844389999999999999869998999999981--7997999999999973999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 88742113454338999999841986999816723422322655086413431010000000000156310521138877
Q gi|254780960|r 145 SLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQIL 224 (297)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 224 (297)
.......++.|++.++++. .+++..++|+++...++..-+++|+.+++.......+. ...+.-.|+..
T Consensus 81 ~~~~~~~~~~pga~elL~~---l~~~~aivS~~~~~~~~~~L~~~gl~~~F~d~ivs~dd---------v~~~KP~Pdiy 148 (221)
T PRK10563 81 RLFDTELEAIAGANALLES---ITVPMCVVSNGPVSKMQHSLGKLGMLHYFPDKLFSGYD---------IQRWKPDPALM 148 (221)
T ss_pred HHHHCCCCCCCCHHHHHHH---CCCCCEEEECCHHHHHHHHHHHCCCHHHCCCEEECHHH---------CCCCCCCCHHH
T ss_conf 9876358707139999996---68997898498799999999975982516878971100---------67899880999
Q ss_pred HHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCE-EEECCCHHHHHHCC-EEEECCCHHHHHHHC
Q ss_conf 532331037766799997892348899848931-89879578998589-899569832767870
Q gi|254780960|r 225 LEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG-VAFHAKPALAKQAK-IRIDHSDLEALLYIQ 286 (297)
Q Consensus 225 ~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~~a~~~v~~~Ad-~~~~~~dl~~~l~~~ 286 (297)
...+++++.+.++|++|||+.||+.+=+.||+- |+|.+.+.=+...+ ..-.++|+..|.-++
T Consensus 149 l~A~~~lgv~p~~clviEDS~~Gi~AA~aAGm~vi~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 212 (221)
T PRK10563 149 FHAAEAMNVNVENCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPIVHPKVTTFTDLAQLPELW 212 (221)
T ss_pred HHHHHHCCCCHHHEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHCHHHHHHHH
T ss_conf 9999982998678487848999999999859969998999876544344323410799819999
No 74
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.10 E-value=8.7e-10 Score=78.68 Aligned_cols=186 Identities=13% Similarity=0.151 Sum_probs=120.1
Q ss_pred CCCCEEEECCCEEEEEC-----CCCHHHHHHHHCCCHHHHHHHHHHH----CCCCCHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 53444872275026524-----5200278874122327788876520----244100123-4556876420045689887
Q gi|254780960|r 78 RRKNLLIADMDSTMIEQ-----ECIDELADLIGIKEKVSLITARAMN----GEIPFQDSL-RERISLFKGTSTKIIDSLL 147 (297)
Q Consensus 78 ~~~~l~~~d~d~tli~~-----~~l~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 147 (297)
...+.++||+||||.+. +..+.++...|....-.....+..+ ..+...+.. .+.-.+++....+.. ..
T Consensus 60 ~tl~aIIFDFDGTLADT~~afv~I~NrLA~eFGY~Pi~~~dl~~LrnlsaReIIk~SgIs~~KiPflLkrVk~el~--~~ 137 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRRAGLSPWQQARLLQRVQRQLG--DC 137 (273)
T ss_pred HHHEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH--HH
T ss_conf 1343889806871451189999999998997398999989999996478999999848987776899999999998--40
Q ss_pred HHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 42113454338999999841986999816723422322655086413431010000000000156310521138877532
Q gi|254780960|r 148 EKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEA 227 (297)
Q Consensus 148 ~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l 227 (297)
.....+.++.++.+..|+..|++..+||.....-++++-+..|+...+.... .+..++ +|...++.+
T Consensus 138 i~~l~pf~GI~e~L~~L~~~G~~LGIITSNs~~NV~~fL~~~~L~~lFdfI~-----------sg~tLF--GK~~~i~~l 204 (273)
T PRK13225 138 LPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQ-----------AGTPIL--SKRRALSQL 204 (273)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH-----------CCCCCC--CCCHHHHHH
T ss_conf 4304567777999999997796799970682889999998623898877884-----------687324--762569999
Q ss_pred HHHHCCCCCEEEEEECCCCHHHHHHHCCCE---EEE--CCCHHHH-HHCCEEEECCC
Q ss_conf 331037766799997892348899848931---898--7957899-85898995698
Q gi|254780960|r 228 IQKLQINPEDTIAVGDGNNDLDMLRVAGYG---VAF--HAKPALA-KQAKIRIDHSD 278 (297)
Q Consensus 228 ~~~~~~~~~~v~avGDg~ND~pmL~~AgvG---VA~--~a~~~v~-~~Ad~~~~~~d 278 (297)
+++.++..++++.|||..+|+.+=+.+++- |++ |..+.++ ...|+.++++.
T Consensus 205 lk~~~l~p~~viYVGDEtRDIeAAkka~i~~iAVtWGFns~e~La~~~PDfLi~~P~ 261 (273)
T PRK13225 205 VAREGWQPAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPS 261 (273)
T ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCHHHCCHH
T ss_conf 998289964468966641207889874985999944779889998729983536999
No 75
>KOG0208 consensus
Probab=99.06 E-value=1.4e-10 Score=83.60 Aligned_cols=148 Identities=17% Similarity=0.165 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCH----HH---H-------------
Q ss_conf 200456898874211345433899999984198699981672342232265508641----34---3-------------
Q gi|254780960|r 137 GTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ----YY---A------------- 196 (297)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~----~~---a------------- 196 (297)
.+.+..+.+++-..-++++.....++.|+++.++++|+|||+-.++-.+|++.|+-. ++ .
T Consensus 690 vEs~l~FlGLiVmeNkLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgmi~p~~~v~~~~~~~~~~~~~~~i~w 769 (1140)
T KOG0208 690 VESNLEFLGLIVMENKLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGMIEPQVKVIIPELEPPEDDSIAQIVW 769 (1140)
T ss_pred HHCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCEEEEECCCCHHEEEEHHHCCCCCCCCCEEEEEECCCCCCCCCCEEEE
T ss_conf 50455256788861445643289999988626379998177543023223036645787708998724776678752699
Q ss_pred ----HCCCC----HHHC-C-------------------CCCCC----------------CCCCCHHHHHHHHHHHHHHHC
Q ss_conf ----10100----0000-0-------------------00015----------------631052113887753233103
Q gi|254780960|r 197 ----NRFIE----KDDR-L-------------------TGQVM----------------EPIIDGTAKSQILLEAIQKLQ 232 (297)
Q Consensus 197 ----~~~~~----~~~~-~-------------------~~~~~----------------~~~~~~~~k~~~~~~l~~~~~ 232 (297)
+...+ +... . .|... ...++++=.|..+..+++.+|
T Consensus 770 ~~ve~~~~~~~~~~~~~~~~~~~~~~d~~~~~~yhlA~sG~~f~~i~~~~~~l~~~Il~~~~VfARMsP~qK~~Lie~lQ 849 (1140)
T KOG0208 770 LCVESQTQFLDPKEPDPDLASVKLSLDVLSEKDYHLAMSGKTFQVILEHFPELVPKILLKGTVFARMSPDQKAELIEALQ 849 (1140)
T ss_pred EECCCHHCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEECCCHHHHHHHHCHHHHHHHHHCCEEEEECCCHHHHHHHHHHH
T ss_conf 98268100578776573325676474341254059996384557788636778999986072776438304899999999
Q ss_pred CCCCEEEEEECCCCHHHHHHHCCCEEEEC-CCHHHHHHCCEEEECCCHHHHHHHC
Q ss_conf 77667999978923488998489318987-9578998589899569832767870
Q gi|254780960|r 233 INPEDTIAVGDGNNDLDMLRVAGYGVAFH-AKPALAKQAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 233 ~~~~~v~avGDg~ND~pmL~~AgvGVA~~-a~~~v~~~Ad~~~~~~dl~~~l~~~ 286 (297)
.-.-.|.|.|||+||--|||+||+||+.. | ++--+|.++-.-.+.+.++-++
T Consensus 850 kl~y~VgfCGDGANDCgALKaAdvGISLSea--EASvAApFTSk~~~I~cVp~vI 902 (1140)
T KOG0208 850 KLGYKVGFCGDGANDCGALKAADVGISLSEA--EASVAAPFTSKTPSISCVPDVI 902 (1140)
T ss_pred HCCCEEEECCCCCCHHHHHHHCCCCCCHHHH--HHHHCCCCCCCCCCHHHHHHHH
T ss_conf 7196899637995146666533347453033--4755076646898500477787
No 76
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; InterPro: IPR006384 This group of sequences belong to the IB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. With exceptions from Bacillus subtilis and Clostridium acetabutylicum, the members of this group are all eukaryotic, spanning metazoa, plants and fungi. .
Probab=98.99 E-value=1.8e-09 Score=76.77 Aligned_cols=173 Identities=22% Similarity=0.354 Sum_probs=118.6
Q ss_pred CEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 4487227502652452002788741223277888765202--44100123455687642004568988742113454338
Q gi|254780960|r 81 NLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNG--EIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGY 158 (297)
Q Consensus 81 ~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (297)
-+++||+|+|++.....+++-..++...... .....+.. ...+..+....+... +.........+..-.+++++.+
T Consensus 2 ~~~v~DFDgTI~~~Ds~~~i~~~~~~~~~~~-~~~~~~~~~l~i~~~d~~~~~L~~~-g~~~de~~~~l~~n~~id~~~~ 79 (207)
T TIGR01489 2 VVVVSDFDGTITKQDSDDWITDKFGKKEAKR-LLKEVLSKDLSIKFMDRLMKVLSSE-GLKEDEILEVLKSNAPIDPGFK 79 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCHHHHH-HHCCHHHCCCCEEECCEEEEEEECC-CCCHHHHHHHHHHCCCCCHHHH
T ss_conf 0889843875342201467765418113677-6242223066101012278886012-5888899999861277673279
Q ss_pred HHHHHHHHCC--CEEEEEECCCHHHHHHHHHHHCCCH------HHHHCCCCHHHC-CCCCCCC-----------CCCCHH
Q ss_conf 9999998419--8699981672342232265508641------343101000000-0000156-----------310521
Q gi|254780960|r 159 ELVHTMKQNG--ASTLLVTGGFSIFARFIAQHLGFDQ------YYANRFIEKDDR-LTGQVME-----------PIIDGT 218 (297)
Q Consensus 159 ~~i~~l~~~g--~~v~iisg~~~~~~~~ia~~lgi~~------~~a~~~~~~~~~-~~~~~~~-----------~~~~~~ 218 (297)
+.+..++.++ +.++++|++..+|++.+-+..++.+ +++|...++++. +..-+.. ....+.
T Consensus 80 ef~~~~~~~~dr~d~~v~S~g~~~FI~~vlE~~~~~~~fss~~I~~N~a~fd~~G~~~~~~~~dPddss~~~~~~~~~g~ 159 (207)
T TIGR01489 80 EFIEFIKEKGDRIDFIVISDGMEFFIDKVLEQIGVKDVFSSVEIYSNPASFDDDGRLIVLNHHDPDDSSAHGCSSCPKGL 159 (207)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCEECCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 99999983588113798858863678999987420363122036635537778812886088888767766441677888
Q ss_pred HH---HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCC
Q ss_conf 13---887753233103776679999789234889984893
Q gi|254780960|r 219 AK---SQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGY 256 (297)
Q Consensus 219 ~k---~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~Agv 256 (297)
+| ++.+.++.+. +.....++++|||.+|+.+=+..+-
T Consensus 160 cK~~~g~~i~~l~e~-~~~~~~~~YiGDg~~D~~p~~~~~~ 199 (207)
T TIGR01489 160 CKSLLGKVIEKLSEK-AVKYEHIVYIGDGVSDVCPAKLSKK 199 (207)
T ss_pred CCCCCHHHHHHHHHH-CCCCCEEEEEECCCCHHHHHHHCCC
T ss_conf 534421567763020-3786259998279624667643178
No 77
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.95 E-value=1.8e-08 Score=70.65 Aligned_cols=150 Identities=18% Similarity=0.265 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCC--HHHHHCCCCHHHCCC--------
Q ss_conf 0045689887421134543389999998419869998167234223226550864--134310100000000--------
Q gi|254780960|r 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFD--QYYANRFIEKDDRLT-------- 207 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~--~~~a~~~~~~~~~~~-------- 207 (297)
.....+...-.....+.|++.++.+.++.. +..+++|.+....+.++++.+|+. +.++.....++-...
T Consensus 69 Vt~~dlrr~sE~sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~PeeeR~E~L 147 (315)
T COG4030 69 VTNRDLRRISELSAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPRGELHGTEVDLDSIAVPEEEREELL 147 (315)
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHCC-CCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 768889999886310489859999987421-7866874229999999987629775543343114744568707799998
Q ss_pred ----------C------------CCC----C------CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHC-
Q ss_conf ----------0------------015----6------310521138877532331037766799997892348899848-
Q gi|254780960|r 208 ----------G------------QVM----E------PIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVA- 254 (297)
Q Consensus 208 ----------~------------~~~----~------~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~A- 254 (297)
+ +.. + ..+-+..|+..+..+|+-.+++-. .+++|||+.|..||+.+
T Consensus 148 ~~~~~~~~~~geelfe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d~s-a~~VGDSItDv~ml~~~r 226 (315)
T COG4030 148 SIIDVIASLSGEELFEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGIDFS-AVVVGDSITDVKMLEAAR 226 (315)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC-EEEECCCCCCHHHHHHHH
T ss_conf 8507511144778898899998602788898998764102675023899988761289965-267337531058999861
Q ss_pred ---CCEEEECCCHHHHHHCCEEEECCCHHHHHHHCCCC
Q ss_conf ---93189879578998589899569832767870988
Q gi|254780960|r 255 ---GYGVAFHAKPALAKQAKIRIDHSDLEALLYIQGYK 289 (297)
Q Consensus 255 ---gvGVA~~a~~~v~~~Ad~~~~~~dl~~~l~~~g~~ 289 (297)
|+.||||+.+-.-..||+.+-++++.++++++-..
T Consensus 227 grGglAvaFNGNeYal~eAdVAvisp~~~a~~pvielf 264 (315)
T COG4030 227 GRGGLAVAFNGNEYALKEADVAVISPTAMAEAPVIELF 264 (315)
T ss_pred CCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 46865899558701235454478655045440799999
No 78
>PRK11590 hypothetical protein; Provisional
Probab=98.93 E-value=2.6e-08 Score=69.64 Aligned_cols=182 Identities=13% Similarity=0.110 Sum_probs=98.4
Q ss_pred CCCCCCEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHH---H-HHHCCCCCHHHHHH---HH---HHHHHHHHHHH--
Q ss_conf 5553444872275026524520027887412232778887---6-52024410012345---56---87642004568--
Q gi|254780960|r 76 ENRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITA---R-AMNGEIPFQDSLRE---RI---SLFKGTSTKII-- 143 (297)
Q Consensus 76 ~~~~~~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~---~~---~~~~~~~~~~~-- 143 (297)
..+.+++++||+|+||..+++...+-++.-...-...+.. . .+.-.+-......+ .. ....+.++..+
T Consensus 2 ~~~~r~vv~FDfDgTL~~~DS~~~flr~~lrr~pl~~ll~lp~lp~~gl~ll~~gr~~r~~~s~~lw~~t~G~~e~~l~a 81 (211)
T PRK11590 2 ATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPLLPIIGIGLLVKGRAARWPMSLLLWGCTFGHSEARLQA 81 (211)
T ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 87451699982788663675379999999985728999998989873214412525556536677766634888999999
Q ss_pred -----HHHHHHHCCCCCCHHHHHHHH-HHCCCEEEEEECCCHHHHHHHHHHHCCC---HHHHHCCCCHHHCCCCCCCCCC
Q ss_conf -----988742113454338999999-8419869998167234223226550864---1343101000000000015631
Q gi|254780960|r 144 -----DSLLEKKITYNPGGYELVHTM-KQNGASTLLVTGGFSIFARFIAQHLGFD---QYYANRFIEKDDRLTGQVMEPI 214 (297)
Q Consensus 144 -----~~~~~~~~~~~~~~~~~i~~l-~~~g~~v~iisg~~~~~~~~ia~~lgi~---~~~a~~~~~~~~~~~~~~~~~~ 214 (297)
...........|.+.+-++.+ .+.|.+|++|||.+...++++..+..+. .+++..+....+ +.+....
T Consensus 82 ~~~~Fa~~~r~~~~~~P~~~~rl~~~l~a~g~~V~vvTaSP~~lv~~v~~~~~~l~~V~viGT~l~~r~G---G~vl~~~ 158 (211)
T PRK11590 82 LQADFVRWFRDNVTAFPVVQERLTTYLLSSDADIWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQRRYG---GWVLTLR 158 (211)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEEEECCC---CEECCCC
T ss_conf 9999999999860335089999999997699879999669299999998747777774278656663258---4662635
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEECCC
Q ss_conf 0521138877532331037766799997892348899848931898795
Q gi|254780960|r 215 IDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAK 263 (297)
Q Consensus 215 ~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~~a~ 263 (297)
+.+..|+. ++.+.++.+..--.+||||..|.|||..+..---+++.
T Consensus 159 C~G~EKV~---rL~~~lg~~~~l~~aYsDS~~D~PlL~~~~~~w~v~~~ 204 (211)
T PRK11590 159 CLGHEKVA---QLERKIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVTPR 204 (211)
T ss_pred CCCHHHHH---HHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCEEECCC
T ss_conf 67679999---99985189950565057874657899846645678871
No 79
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=2.2e-08 Score=70.11 Aligned_cols=174 Identities=20% Similarity=0.250 Sum_probs=129.3
Q ss_pred CEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 44872275026524520027887412232778887652024410012345568764200456898874211345433899
Q gi|254780960|r 81 NLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYEL 160 (297)
Q Consensus 81 ~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (297)
-.++.|+|||+.-....+.+-+..+.+... .+......+.+.+.+.+.+....+...-.++. +.+.....+.|+.++.
T Consensus 4 ~vi~sDFDGTITl~Ds~~~itdtf~~~e~k-~l~~~vls~tiS~rd~~g~mf~~i~~s~~Eil-e~llk~i~Idp~fKef 81 (220)
T COG4359 4 PVIFSDFDGTITLNDSNDYITDTFGPGEWK-ALKDGVLSKTISFRDGFGRMFGSIHSSLEEIL-EFLLKDIKIDPGFKEF 81 (220)
T ss_pred EEEEECCCCCEEECCHHHHHHHCCCCHHHH-HHHHHHHHCCEEHHHHHHHHHHHCCCCHHHHH-HHHHHHCCCCCCHHHH
T ss_conf 089961777067130467887503852789-99998860750289999999876388889999-9998613568207999
Q ss_pred HHHHHHCCCEEEEEECCCHHHHHHHHHHHC----CC--HHHHHCCCCHHH-CCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999984198699981672342232265508----64--134310100000-00000156310521138877532331037
Q gi|254780960|r 161 VHTMKQNGASTLLVTGGFSIFARFIAQHLG----FD--QYYANRFIEKDD-RLTGQVMEPIIDGTAKSQILLEAIQKLQI 233 (297)
Q Consensus 161 i~~l~~~g~~v~iisg~~~~~~~~ia~~lg----i~--~~~a~~~~~~~~-~~~~~~~~~~~~~~~k~~~~~~l~~~~~~ 233 (297)
++.++.+++.+++||+|-.+++.++-+.++ |. ++..|...+..+ ...--+..-...+..|+..+..+.+..
T Consensus 82 ~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~vI~~l~e~~-- 159 (220)
T COG4359 82 VEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSSVIHELSEPN-- 159 (220)
T ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCEECCCCCEEEECCCCCCCCCCCCHHHHHHHCCC--
T ss_conf 999997599889993897547999998643533045557740572675788634325776534777403578764587--
Q ss_pred CCCEEEEEECCCCHHHHHHHCCCEEEE
Q ss_conf 766799997892348899848931898
Q gi|254780960|r 234 NPEDTIAVGDGNNDLDMLRVAGYGVAF 260 (297)
Q Consensus 234 ~~~~v~avGDg~ND~pmL~~AgvGVA~ 260 (297)
+-+.+.|||+.|+++-+..++=.|=
T Consensus 160 --e~~fy~GDsvsDlsaaklsDllFAK 184 (220)
T COG4359 160 --ESIFYCGDSVSDLSAAKLSDLLFAK 184 (220)
T ss_pred --CEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf --3499936986633176653367548
No 80
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.87 E-value=4.7e-08 Score=68.07 Aligned_cols=170 Identities=22% Similarity=0.277 Sum_probs=106.3
Q ss_pred CCEEEECCCEEEEECCCCH-----HHHHHHHCCCHHHHHHHHHHHCCCCC--HHHHHHHHHHHH-----HHHHH--HHHH
Q ss_conf 4448722750265245200-----27887412232778887652024410--012345568764-----20045--6898
Q gi|254780960|r 80 KNLLIADMDSTMIEQECID-----ELADLIGIKEKVSLITARAMNGEIPF--QDSLRERISLFK-----GTSTK--IIDS 145 (297)
Q Consensus 80 ~~l~~~d~d~tli~~~~l~-----~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~--~~~~ 145 (297)
.+.++|||||||++.+.+. ++.+..|........... .+...+ .....+...... ..... ....
T Consensus 2 ~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (221)
T COG0637 2 IKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIREL--HGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEA 79 (221)
T ss_pred CCEEEECCCCCEECCHHHHHHHHHHHHHHCCCCCCHHHHHHH--HCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 978998798980723999999999999985999888999986--277615789999987346664458999999999876
Q ss_pred HHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 87421134543389999998419869998167234223226550864134310100000000001563105211388775
Q gi|254780960|r 146 LLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILL 225 (297)
Q Consensus 146 ~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 225 (297)
......++.||+.+++..|+.+|+.....|+.....++.+.+.+|+.+++.....-.+ ...+.-.|+.-.
T Consensus 80 ~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~d----------v~~~KP~Pd~yL 149 (221)
T COG0637 80 LELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADD----------VARGKPAPDIYL 149 (221)
T ss_pred HCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCHHHCCEEEECCC----------CCCCCCCCHHHH
T ss_conf 4135677551199999998755998899749838889999998388331563773210----------467898979999
Q ss_pred HHHHHHCCCCCEEEEEECCCCHHHHHHHCCCE-EEEC
Q ss_conf 32331037766799997892348899848931-8987
Q gi|254780960|r 226 EAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG-VAFH 261 (297)
Q Consensus 226 ~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~~ 261 (297)
.-+++++.+.++|+.|.|+.|.+.+-+.||+- |++.
T Consensus 150 ~Aa~~Lgv~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~ 186 (221)
T COG0637 150 LAAERLGVDPEECVVVEDSPAGIQAAKAAGMRVVGVP 186 (221)
T ss_pred HHHHHCCCCHHHEEEEECCHHHHHHHHHCCCEEEEEC
T ss_conf 9999849991257989577888999998799899973
No 81
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; InterPro: IPR010023 This entry is a part of the haloacid dehalogenase (HAD) superfamily of hydrolases from beta, gamma and epsilon proteobacteria, Aquifex, Fusobacterium, Porphyromonas and Methanosarcina. All characterised members of the HAD-superfamily hydrolase, subfamily IIIA and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs , all of which are found conserved in this family. Lipopolysaccharides of Gram-negative bacteria consist of a heteropolysaccharide component (O-antigen) and a hydrophobic component (lipid A). Linking the two portions is 3-Deoxy-D-manno-octulosonate (KDO), an 8-carbon sugar. Biosynthesis of KDO linked to lipid A proceeds via five steps, one of which involves removal of a phosphate from KDO 8-P via the action of KDO 8-P phosphatase (3.1.3.45 from EC; IPR008230 from INTERPRO) . One member of this family, the YrbI protein from Haemophilus influenzae has been cloned, expressed, purified and found to be an active phosphatase. Furthermore, its crystal structure has been determined . The sequence from Methanosarcina acetivorans, Q8TJL6 from SWISSPROT, is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (IPR003329 from INTERPRO) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences are also closely related to this family; one such sequence is the CMP-N-acetylneuraminic acid synthetase from mouse, but in this case as in the others the phosphatase domain is clearly inactive as many of the active site residues are not conserved.; GO: 0019143 3-deoxy-manno-octulosonate-8-phosphatase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=98.86 E-value=8.1e-09 Score=72.74 Aligned_cols=134 Identities=22% Similarity=0.285 Sum_probs=109.7
Q ss_pred CEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 44872275026524520027887412232778887652024410012345568764200456898874211345433899
Q gi|254780960|r 81 NLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYEL 160 (297)
Q Consensus 81 ~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (297)
+|++.|.||.|+++..... . + +-......++.| -.
T Consensus 2 ~LlilDvDGvLtDGkiyyt-----~---------------------------------n-----GE~iK~FNV~DG--~g 36 (154)
T TIGR01670 2 KLLILDVDGVLTDGKIYYT-----E---------------------------------N-----GEEIKAFNVKDG--IG 36 (154)
T ss_pred EEEEEECCCEEECCEEEEC-----C---------------------------------C-----CCEEEEECCCCC--HH
T ss_conf 3688842723106706663-----8---------------------------------8-----844312015452--89
Q ss_pred HHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99998419869998167234223226550864134310100000000001563105211388775323310377667999
Q gi|254780960|r 161 VHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIA 240 (297)
Q Consensus 161 i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~a 240 (297)
++.+.+.|+++.+|||=....++.=++.||+.+.|.. ...|-..-..+.+++.+..++|++
T Consensus 37 I~~~lk~gi~~AiItGR~~~~v~~R~k~Lgi~~lY~G-------------------~~~KL~~~~~ileKl~l~~e~~a~ 97 (154)
T TIGR01670 37 IKLLLKLGIKVAIITGRDAKLVEKRLKELGIKELYQG-------------------SKDKLAIYEEILEKLALKDEEVAY 97 (154)
T ss_pred HHHHHHCCCEEEEEECCCCHHHHHHHHHCCCEEEECC-------------------CHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9999974986989817987568988877582032058-------------------656899999988874787022136
Q ss_pred EECCCCHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECCC
Q ss_conf 97892348899848931898-795789985898995698
Q gi|254780960|r 241 VGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSD 278 (297)
Q Consensus 241 vGDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~d 278 (297)
+||-.||.|.++..|.+||. +|.+.++..||+++..+.
T Consensus 98 iGDd~~D~~vmekVGlsvav~da~~~l~~~adyvt~~~G 136 (154)
T TIGR01670 98 IGDDLVDKEVMEKVGLSVAVKDAHKELRKVADYVTRKKG 136 (154)
T ss_pred ECCCCCCHHHHHHCCCCCCCCCCHHHCCCEEEEEECCCC
T ss_conf 625100658885369952301221211041556861556
No 82
>PRK10725 fructose-1-phosphatase; Provisional
Probab=98.83 E-value=5.4e-08 Score=67.72 Aligned_cols=167 Identities=22% Similarity=0.312 Sum_probs=93.1
Q ss_pred CCCEEEECCCEEEEECCCCH-----HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHH---------HHHHHHHHHHH
Q ss_conf 34448722750265245200-----27887412232778887652024410012345568---------76420045689
Q gi|254780960|r 79 RKNLLIADMDSTMIEQECID-----ELADLIGIKEKVSLITARAMNGEIPFQDSLRERIS---------LFKGTSTKIID 144 (297)
Q Consensus 79 ~~~l~~~d~d~tli~~~~l~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 144 (297)
+.+.++||+||||++.+.+. ......|....... .....+...+. ....... .+.........
T Consensus 4 k~kaviFDlDGTLvDS~~~~~~a~~~~~~~~g~~~~~~~--~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (188)
T PRK10725 4 RYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQA--MVALNGSPTWR-IAQAIIELNQADLDPHALAREKTEAVK 80 (188)
T ss_pred CCCEEEECCCCCHHCCHHHHHHHHHHHHHHCCCCCCHHH--HHHHCCCCHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 588988999685543899999999999998699999999--99846986999-999999852588999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 88742113454338999999841986999816723422322655086413431010000000000156310521138877
Q gi|254780960|r 145 SLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQIL 224 (297)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 224 (297)
........+.|. .+.++.++. .....+.|+.....++.+-+.+|+.+++......++ ...+.-.|+..
T Consensus 81 ~~~~~~~~~~p~-~e~l~~~~~-~~~~av~T~~~~~~~~~~l~~~gl~~~Fd~iv~~dd----------v~~~KP~Pd~y 148 (188)
T PRK10725 81 SMLLDSVEPLPL-VEVVKSWHG-RRPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADH----------VKHHKPAPDTF 148 (188)
T ss_pred HHHHCCCCCCCH-HHHHHHHCC-CCCEEEEECCCHHHHHHHHHHCCCCHHCCEEEECCC----------CCCCCCCCHHH
T ss_conf 998703875648-999998559-999999979838999999997599122124354343----------45799886999
Q ss_pred HHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCE-EEE
Q ss_conf 532331037766799997892348899848931-898
Q gi|254780960|r 225 LEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG-VAF 260 (297)
Q Consensus 225 ~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~ 260 (297)
...+++++++.++|++|||+.+|+.+=+.||+- |++
T Consensus 149 l~a~~~lg~~p~~clvieDS~~gi~aA~~AG~~~I~V 185 (188)
T PRK10725 149 LLCAQRMGVQPTQCVVFEDADFGIQAARAAGMDAVDV 185 (188)
T ss_pred HHHHHHHCCCHHHEEEEECCHHHHHHHHHCCCEEEEE
T ss_conf 9999991969779687938988999999979918998
No 83
>PRK09449 nucleotidase; Provisional
Probab=98.72 E-value=7.2e-07 Score=60.81 Aligned_cols=123 Identities=20% Similarity=0.303 Sum_probs=84.8
Q ss_pred HHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHH--HHHHH
Q ss_conf 2113454338999999841986999816723422322655086413431010000000000156310521138--87753
Q gi|254780960|r 149 KKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKS--QILLE 226 (297)
Q Consensus 149 ~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~--~~~~~ 226 (297)
....+.|++.++++.|+.. +++.+||.++.......-+.+|+.+++-.....+ -.+..|| +....
T Consensus 92 ~~~~~~pgv~e~L~~Lk~~-~~lgIiTNG~~~~q~~kL~~~gL~~~Fd~iv~Se------------~~g~~KPdp~iF~~ 158 (225)
T PRK09449 92 EICTPLPGAVELLNALRGK-VKMGIITNGFTELQQVRLERTGLRDYFDLLVISE------------QVGVAKPDKKIFDY 158 (225)
T ss_pred HHCCCCCCHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHCCHHHHCCEEEEEC------------CCCCCCCCHHHHHH
T ss_conf 7487695599999999748-9899996988899999998367665146688633------------45767887499999
Q ss_pred HHHHHCCCC-CEEEEEECC-CCHHHHHHHCCCEEEE-CC--CHHH-HHHCCEEEECCCHHHHHHHC
Q ss_conf 233103776-679999789-2348899848931898-79--5789-98589899569832767870
Q gi|254780960|r 227 AIQKLQINP-EDTIAVGDG-NNDLDMLRVAGYGVAF-HA--KPAL-AKQAKIRIDHSDLEALLYIQ 286 (297)
Q Consensus 227 l~~~~~~~~-~~v~avGDg-~ND~pmL~~AgvGVA~-~a--~~~v-~~~Ad~~~~~~dl~~~l~~~ 286 (297)
.+.+++... ++|+||||+ .+|+-.=+.||+--.+ |. .+.- ....++.|. +|..|.=+|
T Consensus 159 al~~l~~~~~e~~l~VGDs~~~Di~gA~~aG~~tvw~N~~~~~~~~~~~p~~~I~--~l~eL~~il 222 (225)
T PRK09449 159 ALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYTVS--SLHELEQLL 222 (225)
T ss_pred HHHHCCCCCHHHEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEC--CHHHHHHHH
T ss_conf 9998499986885875687304679899879959998999997866799998988--999999998
No 84
>PRK08238 hypothetical protein; Validated
Probab=98.67 E-value=1.9e-07 Score=64.35 Aligned_cols=163 Identities=22% Similarity=0.299 Sum_probs=106.4
Q ss_pred CCCEEEECCCEEEEECCCCHHHHHHH-HC-CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 34448722750265245200278874-12-23277888765202441001234556876420045689887421134543
Q gi|254780960|r 79 RKNLLIADMDSTMIEQECIDELADLI-GI-KEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPG 156 (297)
Q Consensus 79 ~~~l~~~d~d~tli~~~~l~~~a~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (297)
+..-++.|+|+||+..+.+.|..-.. .. -...-....-..+|...+-+...++. .......|.++.
T Consensus 11 ~~~PLvVDLDGTLi~tD~L~Es~~~~l~~~p~~~~~l~~~l~~Gka~lK~~La~~~------------~~d~~~LPyn~~ 78 (481)
T PRK08238 11 RSLPLVVDLDGTLLRSDLLHESIFALLKRNPLALFRLPLWLLRGKAALKRRLAERV------------DLDVATLPYNEE 78 (481)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHC------------CCCHHHCCCCHH
T ss_conf 99996986898643465799999999987879999999999679499999997407------------889774798989
Q ss_pred HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCC-CHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 38999999841986999816723422322655086-41343101000000000015631052113887753233103776
Q gi|254780960|r 157 GYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGF-DQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINP 235 (297)
Q Consensus 157 ~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi-~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~ 235 (297)
+-+.++.-|+.|-+++++|+.+..+++++++++|+ +.++++... ....+..|.+.+.+.....+
T Consensus 79 vl~~l~~~k~~GR~vvL~Tas~~~~a~~IA~hLglFd~v~aSd~~------------~NL~g~~Ka~~L~~~fG~~g--- 143 (481)
T PRK08238 79 VLDYLRAERAAGRPIVLATASDERLAQAVAAHLGLFDGVLASDGT------------TNLKGAAKAAALVEAFGEKG--- 143 (481)
T ss_pred HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCCEEECCCCC------------CCCCCHHHHHHHHHHCCCCC---
T ss_conf 999999999869979999588699999999857985535516885------------34676489999998758767---
Q ss_pred CEEEEEECCCCHHHHHHHCCCEEEECCCHHHHHHC
Q ss_conf 67999978923488998489318987957899858
Q gi|254780960|r 236 EDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQA 270 (297)
Q Consensus 236 ~~v~avGDg~ND~pmL~~AgvGVA~~a~~~v~~~A 270 (297)
=.-+||+..|+|-.+.|.-.|-+|+.+.++..+
T Consensus 144 --FdY~Gns~~DlpVW~~A~~ai~V~~~~~~~~~~ 176 (481)
T PRK08238 144 --FDYAGNSRADLPVWAAARRAIVVGASAGVARKA 176 (481)
T ss_pred --CCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHH
T ss_conf --530478724526698516208747987899999
No 85
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.67 E-value=3e-06 Score=57.01 Aligned_cols=93 Identities=22% Similarity=0.216 Sum_probs=53.2
Q ss_pred HHHHHHHHHCCCEEEEEECCCHHHHH--HHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHH---HHC
Q ss_conf 89999998419869998167234223--2265508641343101000000000015631052113887753233---103
Q gi|254780960|r 158 YELVHTMKQNGASTLLVTGGFSIFAR--FIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQ---KLQ 232 (297)
Q Consensus 158 ~~~i~~l~~~g~~v~iisg~~~~~~~--~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~---~~~ 232 (297)
.++-...++..-...+..|+.....+ ...++.|+.-.. .+ +..........|+.+++.+.. .+.
T Consensus 135 ~~a~~A~~Re~Sep~~w~g~~~~~~~f~~~l~~~gl~~~~-------GG----Rf~hi~~~~~dKg~A~~~L~~~~~~~~ 203 (271)
T PRK03669 135 SQAALTRLHEASVTLIWRDSDERMAQFTARLNELGLQFVQ-------GA----RFWHVLDASAGKDQAANWLIATYQQLS 203 (271)
T ss_pred HHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCEEEE-------CC----CEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999886400630168679899999999999976957974-------78----169960689886999999999999852
Q ss_pred CCCCEEEEEECCCCHHHHHHHCCCEEEEC
Q ss_conf 77667999978923488998489318987
Q gi|254780960|r 233 INPEDTIAVGDGNNDLDMLRVAGYGVAFH 261 (297)
Q Consensus 233 ~~~~~v~avGDg~ND~pmL~~AgvGVA~~ 261 (297)
...-.++++|||.||++||+.||++|-+.
T Consensus 204 ~~~~~tIAlGDs~NDi~ML~~aD~~vvV~ 232 (271)
T PRK03669 204 GKRPTTLGLGDGPNDAPLLDVMDYAVVVK 232 (271)
T ss_pred CCCCEEEEECCCCCCHHHHHHCCEEEEEC
T ss_conf 89855999469811299998589539977
No 86
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=98.66 E-value=5.6e-07 Score=61.49 Aligned_cols=189 Identities=24% Similarity=0.337 Sum_probs=122.2
Q ss_pred CCCCEEEECCCEEEEECCCCHHHH--HHHHCCCHH--------HHHHHHHHHCCCCCHHHHHHHHH----HHHH-----H
Q ss_conf 534448722750265245200278--874122327--------78887652024410012345568----7642-----0
Q gi|254780960|r 78 RRKNLLIADMDSTMIEQECIDELA--DLIGIKEKV--------SLITARAMNGEIPFQDSLRERIS----LFKG-----T 138 (297)
Q Consensus 78 ~~~~l~~~d~d~tli~~~~l~~~a--~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~ 138 (297)
...+.++|||||||...+.+-+.+ +.+...... -+.+.+.|. .+....|...+. -.+. .
T Consensus 239 ~~~~a~ifdmdgtlfqt~~il~~al~~tf~~lr~~~~w~~~tpi~~y~~img--vplp~vw~~l~p~~s~~~r~~~~~~f 316 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMG--VPLPKVWEALLPDHSLEIREQTDAYF 316 (459)
T ss_pred HHHHHHEECCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC--CCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 8888853357785000636878888999999976277678995899999858--96179999878774488999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHH
Q ss_conf 04568988742113454338999999841986999816723422322655086413431010000000000156310521
Q gi|254780960|r 139 STKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGT 218 (297)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (297)
...+......-...+.|++.++++.|+..|+.+++-|.+.....++|-..++++.++...+..+. ....
T Consensus 317 ~~~li~~i~~g~g~ly~~v~~~~~~l~~~~~~~~iasng~~~yl~aiv~~y~l~~~~~~~~si~~-----------~~~~ 385 (459)
T PRK06698 317 LERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQ-----------INSL 385 (459)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHH-----------HHCC
T ss_conf 99999998658986464799999999974996799648569999999999706788873135988-----------7134
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCE-EE--E-CCCHHHHHHCCEEEECCCHHHHH
Q ss_conf 138877532331037766799997892348899848931-89--8-79578998589899569832767
Q gi|254780960|r 219 AKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG-VA--F-HAKPALAKQAKIRIDHSDLEALL 283 (297)
Q Consensus 219 ~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA--~-~a~~~v~~~Ad~~~~~~dl~~~l 283 (297)
+|.+-++.+...+++. .-+||||-.+|+.+-|..|+- |. | -|.+.=-..||++++ ||+.|.
T Consensus 386 ~ksdlv~~i~~~~~i~--~~~~vgdr~sdi~aak~n~l~~igc~f~fa~~~el~~ad~vi~--~~~el~ 450 (459)
T PRK06698 386 NKSDLVKSILNKYDIK--EAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDELAQADIVID--DLLELK 450 (459)
T ss_pred CHHHHHHHHHHHCCCC--CCEEECCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHCCCHHH--HHHHHH
T ss_conf 5768999999873975--1158515155555687569378413657665767763463587--799999
No 87
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253; InterPro: IPR011950 This family of sequences from archaea and metazoans includes the human uncharacterised protein CTE7. Pyrococcus species appear to have three different forms of this enzyme, so it is unclear whether all members of this family have the same function. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterised by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA ..
Probab=98.65 E-value=2.5e-07 Score=63.68 Aligned_cols=118 Identities=16% Similarity=0.295 Sum_probs=89.0
Q ss_pred HHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 42113454338999999841986999816723422322655086413431010000000000156310521138877532
Q gi|254780960|r 148 EKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEA 227 (297)
Q Consensus 148 ~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l 227 (297)
.....+.|++.+++..|++.|+++.|||.|.+...-.--.++|+.++|-....-++. ....-.|+.-..-
T Consensus 109 ~~~l~~~p~~~~~L~~LR~~Gy~Lg~iT~G~~~~Q~eKl~~lg~~~fFD~V~~s~e~----------g~~KPhP~IF~~A 178 (244)
T TIGR02253 109 FAYLKVYPDVVDTLMELRESGYRLGLITDGLTVKQWEKLERLGIRDFFDAVITSEEL----------GVEKPHPKIFYAA 178 (244)
T ss_pred HHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEECCCC----------CCCCCCHHHHHHH
T ss_conf 653366876889999998647788998668778999999982775357705722444----------7769785899999
Q ss_pred HHHHCCCCCEEEEEECCC-CHHHHHHHCCCEEEE--C-C--C------HHHHHHCCEEEE
Q ss_conf 331037766799997892-348899848931898--7-9--5------789985898995
Q gi|254780960|r 228 IQKLQINPEDTIAVGDGN-NDLDMLRVAGYGVAF--H-A--K------PALAKQAKIRID 275 (297)
Q Consensus 228 ~~~~~~~~~~v~avGDg~-ND~pmL~~AgvGVA~--~-a--~------~~v~~~Ad~~~~ 275 (297)
|.++|+.+++|+||||.. .|+.==+.||++-.+ + . . +++...+|+.|+
T Consensus 179 l~~~gV~p~eaVmVGD~L~~Di~GAk~~Gm~tTvwi~~~~~~~~~~~~~d~~~~pDf~i~ 238 (244)
T TIGR02253 179 LRRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTTVWINRGKYKKMEQSLDDVYPKPDFEIS 238 (244)
T ss_pred HHHHCCCCCCEEEECCCCCCCCHHHHHHHHHEEEEECCCCCHHHHHHHHCCCCCCCEEEC
T ss_conf 997088936666767850002223564120103763478873345321034558886617
No 88
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=98.29 E-value=1.9e-05 Score=52.19 Aligned_cols=116 Identities=16% Similarity=0.249 Sum_probs=79.3
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHH--HHHHHH
Q ss_conf 113454338999999841986999816723422322655086413431010000000000156310521138--877532
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKS--QILLEA 227 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~--~~~~~l 227 (297)
...+.|++.+.++.|++. +++.+||.|+... +..|+.+++-..+..+ -.+..|| +.-...
T Consensus 111 ~~~~~~~~~~~L~~L~~~-y~L~iITNG~~~~-----q~~gL~~~Fd~vi~Se------------e~G~~KP~~~IF~~A 172 (238)
T PRK10748 111 RIDVPQATHDTLKQLAKK-WPLVAITNGNAQP-----ELFGLGDYFEFVLRAG------------PHGRSKPFSDMYHLA 172 (238)
T ss_pred CCCCCHHHHHHHHHHHHC-CEEEEEECCCHHH-----HHCCHHHHHHHHCCCC------------CCCCCCCCHHHHHHH
T ss_conf 177454689999999734-7189995794278-----7638677516624412------------148899897999999
Q ss_pred HHHHCCCCCEEEEEECC-CCHHHHHHHCCCEEEE-CCC--HH-----HHHHCCEEEECCCHHHHHHH
Q ss_conf 33103776679999789-2348899848931898-795--78-----99858989956983276787
Q gi|254780960|r 228 IQKLQINPEDTIAVGDG-NNDLDMLRVAGYGVAF-HAK--PA-----LAKQAKIRIDHSDLEALLYI 285 (297)
Q Consensus 228 ~~~~~~~~~~v~avGDg-~ND~pmL~~AgvGVA~-~a~--~~-----v~~~Ad~~~~~~dl~~~l~~ 285 (297)
+++++.+.++|+||||+ .||+--=+.||+--.+ |.. +. ..-..++.|. +|..|+-+
T Consensus 173 l~~lg~~pee~l~VGD~~~~DI~GA~~aGm~~vW~N~~~~~~~~~~~~~~~P~~eI~--~l~eL~~l 237 (238)
T PRK10748 173 AEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEIS--RLASLTSL 237 (238)
T ss_pred HHHCCCCHHHEEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEC--CHHHHHHH
T ss_conf 998298989945435881887898998798699978999987778866899987977--99999854
No 89
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.26 E-value=3.1e-05 Score=50.78 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHCC--CCCEEEEEECCCCHHHHHHHCCCEEEE
Q ss_conf 138877532331037--766799997892348899848931898
Q gi|254780960|r 219 AKSQILLEAIQKLQI--NPEDTIAVGDGNNDLDMLRVAGYGVAF 260 (297)
Q Consensus 219 ~k~~~~~~l~~~~~~--~~~~v~avGDg~ND~pmL~~AgvGVA~ 260 (297)
.|.++++.+...++. ..-.+++.|||-||+|||..||++|-+
T Consensus 208 ~~~~a~~~l~~~y~~~~~~v~tIaLGDspNDi~MLeaaD~aVvI 251 (302)
T PRK12702 208 PGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVL 251 (302)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCEEEEE
T ss_conf 59999999999998547985499971877659999858876996
No 90
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.11 E-value=8.2e-05 Score=48.23 Aligned_cols=98 Identities=28% Similarity=0.399 Sum_probs=68.2
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHH--HHHHHHHH
Q ss_conf 1345433899999984198699981672342232265508641343101000000000015631052113--88775323
Q gi|254780960|r 151 ITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAK--SQILLEAI 228 (297)
Q Consensus 151 ~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k--~~~~~~l~ 228 (297)
.+..+++.+.++.++.. +++.++|.+.........+++|+...+-..+.... .+..| ++.-...+
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~------------~g~~KP~~~~f~~~~ 164 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISED------------VGVAKPDPEIFEYAL 164 (229)
T ss_pred CCCCHHHHHHHHHCCCC-CCEEEEECCCCHHHHHHHHHCCCHHHCCEEEEECC------------CCCCCCCHHHHHHHH
T ss_conf 67748899999971545-73899878980889999997685766778999766------------898899999999999
Q ss_pred HHHCCCCCEEEEEECCC-CHHHHHHHCCCE-EEEC
Q ss_conf 31037766799997892-348899848931-8987
Q gi|254780960|r 229 QKLQINPEDTIAVGDGN-NDLDMLRVAGYG-VAFH 261 (297)
Q Consensus 229 ~~~~~~~~~v~avGDg~-ND~pmL~~AgvG-VA~~ 261 (297)
++++++.+++++|||+. ||+..-+.+|+- |-++
T Consensus 165 ~~~g~~p~~~l~VgD~~~~di~gA~~~G~~~vwi~ 199 (229)
T COG1011 165 EKLGVPPEEALFVGDSLENDILGARALGMKTVWIN 199 (229)
T ss_pred HHCCCCCHHEEEECCCHHHHHHHHHHHCCEEEEEC
T ss_conf 98398920189975987899999998198899863
No 91
>TIGR01990 bPGM beta-phosphoglucomutase; InterPro: IPR010972 This model represents the beta-phosphoglucomutase enzyme which catalyses the interconversion of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha to beta or vice versa) while the 1-phosphate is not. A separate enzyme is responsible for the isomerisation of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorolysis of maltose (2.4.1.8 from EC), trehalose (2.4.1.64 from EC) or trehalose-6-phosphate (2.4.1.216 from EC). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterised by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold . Beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily , . The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes. The enzyme from Lactococcus lactis has been extensively characterised including a remarkable crystal structure which traps the pentacoordinate transition state . .
Probab=98.10 E-value=3.6e-05 Score=50.40 Aligned_cols=165 Identities=22% Similarity=0.313 Sum_probs=100.3
Q ss_pred CEEEECCCEEEEECCCCH-----HHHHHHHCCCH---------HHH--HHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 448722750265245200-----27887412232---------778--887652-0244100123455687642004568
Q gi|254780960|r 81 NLLIADMDSTMIEQECID-----ELADLIGIKEK---------VSL--ITARAM-NGEIPFQDSLRERISLFKGTSTKII 143 (297)
Q Consensus 81 ~l~~~d~d~tli~~~~l~-----~~a~~~~~~~~---------~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (297)
+-++||+||++++....+ .+|+..|+.-. +.+ -.+... .+.. =..+......-+....+..+
T Consensus 2 kavIFDLDGVItDTA~yHy~AWk~~AdelGI~fd~~~NE~LKGvSR~dSL~~IL~~~~~-En~~s~~e~~~la~~KN~~Y 80 (190)
T TIGR01990 2 KAVIFDLDGVITDTAEYHYLAWKHLADELGIPFDEEFNESLKGVSREDSLERILKLGGK-ENKYSEEEKEELAERKNDYY 80 (190)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHH
T ss_conf 44786268731144268899999999883982064877412898878999999733798-88857789999999877999
Q ss_pred HHHH-HH--HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHH
Q ss_conf 9887-42--11345433899999984198699981672342232265508641343101000000000015631052113
Q gi|254780960|r 144 DSLL-EK--KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAK 220 (297)
Q Consensus 144 ~~~~-~~--~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k 220 (297)
..++ .. ...+-||+..++++||++++++.+=|.+. =+.-|-++|++..+|. .+..+.--+.+|
T Consensus 81 ~~LlD~~lTp~d~LPGi~~lL~~Lk~~~ikialASaSk--NA~~vLekL~L~~~Fd------------~IvDp~~~~~gK 146 (190)
T TIGR01990 81 VELLDKELTPEDVLPGIKSLLEDLKKKNIKIALASASK--NAPTVLEKLELRDYFD------------AIVDPAEIKKGK 146 (190)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHCCCCEEEEEHHH--HHHHHHHHHHHHHCCC------------EEECHHHHCCCC
T ss_conf 99975068986604018999999998489488730234--4899999821422042------------264545621787
Q ss_pred H--HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCE-EEE
Q ss_conf 8--877532331037766799997892348899848931-898
Q gi|254780960|r 221 S--QILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG-VAF 260 (297)
Q Consensus 221 ~--~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~ 260 (297)
| +....-|+.++++.++|+.|=|+.-=+.+++.||+- |++
T Consensus 147 PdPEIFL~AA~~LGv~P~~cigiEDA~AGI~ai~~aGm~avGv 189 (190)
T TIGR01990 147 PDPEIFLAAAEGLGVSPEECIGIEDAQAGIEAIKAAGMFAVGV 189 (190)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHEECHHHHHHHHHHCCCEEEEC
T ss_conf 7867999999763897557010122589999999759537721
No 92
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase; InterPro: IPR010976 Phosphoglucomutases interconvert D-glucose 1-phosphate and D-glucose 6-phosphate, a reaction which is important for energy metabolism in many organisms and for cell wall biosynthesis in bacteria , . Beta-phosphoglucomutases are monomeric enzymes which interconvert the beta anomers of these compounds using Mg2+ as a cofactor. This entry groups together three clades: the characterised beta-phosphoglucomutases (bPGMs) (including those from Escherichia coli, Bacillus subtilus and Lactococcus lactis, a clade of putative bPGMs from mycobacteria and a clade including the uncharacterised Escherichia coli and Haemophilus influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the 'variant 3' Glu-Asp version of the third conserved HAD domain. The Lactococcus enzyme has been crystallised and studied in detail . It is composed of two distinct regions, an alpha/beta core domain similar to that found in other HAD family members, and a helical cap domain. The core domain contains a central six-stranded parallel beta sheet surrounded by six alpha helices, while the cap domain consists of an antiparallel four alpha-helix bundle. Overall, the monomer forms a "kidney-bean" shape similar to that observed in other HAD family members such as phosphoserine phosphatase. The active site of the enzyme is located at the interface of the two domains..
Probab=97.99 E-value=0.00012 Score=47.17 Aligned_cols=171 Identities=21% Similarity=0.275 Sum_probs=109.3
Q ss_pred CEEEECCCEEEEECCCCH-----HHHHHHHCC-------CHHHHHHHHHHHCC-------------------CCC-HHHH
Q ss_conf 448722750265245200-----278874122-------32778887652024-------------------410-0123
Q gi|254780960|r 81 NLLIADMDSTMIEQECID-----ELADLIGIK-------EKVSLITARAMNGE-------------------IPF-QDSL 128 (297)
Q Consensus 81 ~l~~~d~d~tli~~~~l~-----~~a~~~~~~-------~~~~~~~~~~~~~~-------------------~~~-~~~~ 128 (297)
+-++|||||++++.-.++ .+++.++.. ..-..-.....+|. -.. ....
T Consensus 2 ~a~IFDmDGVi~DT~~~H~~AW~~~~~~~g~~r~~~~~~Fdp~~~~~~~l~G~~r~~~~~~il~~~~~~IP~~~~ed~~~ 81 (211)
T TIGR02009 2 KAVIFDMDGVIVDTAPLHAQAWKALADKYGIERAEKFVLFDPEEQYNESLKGLSREDILRAILKLRAVDIPDGSKEDGLS 81 (211)
T ss_pred CEEEECCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 64665177500021689999999999983558876666589899999983899768999999874277699988896889
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HH-CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHC
Q ss_conf 45568764200456898874--21-1345433899999984198699981672342232265508641343101000000
Q gi|254780960|r 129 RERISLFKGTSTKIIDSLLE--KK-ITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDR 205 (297)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~ 205 (297)
...+.-+.......+..++. .. ..+-|+.+..++++++.++.+.+.|..-+.-+..|-..+++..+|.-......-
T Consensus 82 ~~~~~~l~~~K~~~y~~ll~qE~~~~~~lp~~~~~l~~l~~~~i~~a~gS~SGP~Na~~~L~~~~L~~~F~~~Vda~~v- 160 (211)
T TIGR02009 82 LEKIEQLAERKNELYRELLRQELTGAEVLPGIENLLKELKKKGIAVALGSSSGPKNADRILAKLGLTDYFDAVVDASEV- 160 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCEEECHHHH-
T ss_conf 8899999999999999998622672100365589999998669857884054502479999986126580143276899-
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCE
Q ss_conf 0000156310521138877532331037766799997892348899848931
Q gi|254780960|r 206 LTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG 257 (297)
Q Consensus 206 ~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG 257 (297)
-+..+-+.--|+.-..-+++||.+.++|+.|=|+.-=+.+..+||+.
T Consensus 161 -----k~~~~AgKP~Pe~FL~AA~~Lgv~P~~C~vfEDA~~G~~Aa~aaGm~ 207 (211)
T TIGR02009 161 -----KEEGLAGKPHPETFLLAAELLGVSPEECVVFEDADAGVQAARAAGMF 207 (211)
T ss_pred -----HHHCCCCCCCHHHHHHHHHHCCCCHHHEEEEECHHHHHHHHHHCCCC
T ss_conf -----76147998871058999987478975803322257899999836981
No 93
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254; InterPro: IPR011951 This family consists of uncharacterised proteobacterial and Gram-positive bacterial sequences including YjjG from Escherichia coli and YfnB from Bacillus subtilis..
Probab=97.90 E-value=6.1e-05 Score=49.01 Aligned_cols=108 Identities=21% Similarity=0.400 Sum_probs=80.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 89887421134543389999998419869998167234223226550864134310100000000001563105211388
Q gi|254780960|r 143 IDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQ 222 (297)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~ 222 (297)
+.......-.+.||+-++++.|++...++++||.|++.+...--+..|+...+-..+..++. |..||.
T Consensus 94 yl~~l~~~~~L~pGA~el~~~L~~~d~~l~ivtNG~~~~Q~~rl~~~gL~~Ff~~v~~SEd~------------G~~KP~ 161 (233)
T TIGR02254 94 YLEFLEEKARLLPGALELMEALQKKDLRLYIVTNGVREVQEKRLRKSGLAPFFDQVLVSEDA------------GIEKPD 161 (233)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHEEECHHH------------CCCCCC
T ss_conf 99998732023700799999870077137888777066777887634772105144402221------------455888
Q ss_pred H--HHHHHHHH-CCCCCEEEEEECCC-CHHHHHHHCCCEEEE-CC
Q ss_conf 7--75323310-37766799997892-348899848931898-79
Q gi|254780960|r 223 I--LLEAIQKL-QINPEDTIAVGDGN-NDLDMLRVAGYGVAF-HA 262 (297)
Q Consensus 223 ~--~~~l~~~~-~~~~~~v~avGDg~-ND~pmL~~AgvGVA~-~a 262 (297)
. -.-..++. +...++|+||||+. .|+.==+.||+---+ |+
T Consensus 162 ~~iF~~aLer~~~~~k~~~L~vGD~~~aDi~Ga~naGl~~vw~n~ 206 (233)
T TIGR02254 162 KKIFDYALERMGKLKKEEVLMVGDSLEADIKGARNAGLDTVWLNP 206 (233)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCEEEEEECC
T ss_conf 567789987178887231678607804578766661400355177
No 94
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB; InterPro: IPR006379 This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class II subfamilies are characterised by a domain that is located between the second and third conserved catalytic motifs of the superfamily domain. The IIB subfamily is distinguished from the IIA subfamily (IPR006357 from INTERPRO) by homology and the predicted secondary structure of this domain by PSI-PRED. The IIB subfamilys Class II domain has the following predicted structure: Helix-Sheet-Sheet-(Helix or Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB subfamily consists of trehalose-6-phosphatase, plant and cyanobacterial sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase, a large subfamily of Cof-like hydrolases, containing many closely related bacterial sequences, a hypothetical equivalog containing the Escherichia coli YedP protein, as well as two other small clusters whose relationship to the other groups is unclear.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=97.89 E-value=1.1e-05 Score=53.47 Aligned_cols=54 Identities=30% Similarity=0.520 Sum_probs=48.1
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHHHHC-----CCCCEEEEEEC---CCCHHHHHHHCCCEEEE
Q ss_conf 000156310-52113887753233103-----77667999978---92348899848931898
Q gi|254780960|r 207 TGQVMEPII-DGTAKSQILLEAIQKLQ-----INPEDTIAVGD---GNNDLDMLRVAGYGVAF 260 (297)
Q Consensus 207 ~~~~~~~~~-~~~~k~~~~~~l~~~~~-----~~~~~v~avGD---g~ND~pmL~~AgvGVA~ 260 (297)
.....+..+ .+.+|..+++.+.++++ +...+++++|| |.||.+||+.++.+++|
T Consensus 199 ~~~~~~~~p~~~~~Kg~a~~~~~~~~~~~~~~~~~~~~~~~GD~T~~~ND~~~~~~~~~~~~v 261 (261)
T TIGR01484 199 GKTLLEVLPLAGVDKGSALQALLEELNKRSDDLKKDEILAFGDKTYSGNDEEMFEVAGLAVAV 261 (261)
T ss_pred CCCCEECCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCC
T ss_conf 340000122366888899999997303100026878689872168884518999738862129
No 95
>TIGR01549 HAD-SF-IA-v1 HAD-superfamily hydrolase, subfamily IA, variant 1; InterPro: IPR006439 This family represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs . The subfamilies are defined based on the location and the observed or predicted fold of a so-called capping domain , or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single HMM is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an apparent phylogenetic bifurcation. Subfamily IA is still too broad to model, but can be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)(D/E), (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily 1A. ; GO: 0008967 phosphoglycolate phosphatase activity, 0008152 metabolic process.
Probab=97.88 E-value=0.00014 Score=46.82 Aligned_cols=146 Identities=21% Similarity=0.250 Sum_probs=78.8
Q ss_pred EEEECCCEEEEECCCCHHHHHH--HHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 4872275026524520027887--41223277888765202441001234556876420045689887421134543389
Q gi|254780960|r 82 LLIADMDSTMIEQECIDELADL--IGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYE 159 (297)
Q Consensus 82 l~~~d~d~tli~~~~l~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (297)
.++||.|+||+........-.. .........+....+.....+ .. ......+.+. .......++..+
T Consensus 1 ~i~FD~dGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~-~~~~~~~~~~~~ 69 (151)
T TIGR01549 1 AILFDIDGTLVDSEAIREALEQTFEEFGASFKRLKALRLAEELLW---------RI-ATSLEELQGL-EAEEAYIRDAVD 69 (151)
T ss_pred CEEECCCCCEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---------HH-HCCHHHHHHH-HHHHHHCCCHHH
T ss_conf 857613771436505788999999862310778999988888787---------75-0137998854-211101246689
Q ss_pred HHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHH--HHHHHHHHCCCCCE
Q ss_conf 9999984198699981672342232265508641343101000000000015631052113887--75323310377667
Q gi|254780960|r 160 LVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQI--LLEAIQKLQINPED 237 (297)
Q Consensus 160 ~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~~l~~~~~~~~~~ 237 (297)
.+.. ..++++.++|++.........+.+...+.+.... ...+..||+. ....|+.++. ..+
T Consensus 70 ~l~~--l~~~~~~i~S~~~~~~~~~~~~~~~~~f~~~~~~--------------~~~~~~Kp~~~~~~~~~~~~~~-~~~ 132 (151)
T TIGR01549 70 LLKR--LAGYRLGIISNGSLRAQKLLLRLLYDYFELILVS--------------DEPGVSKPNPEIFLAALESLGL-GPE 132 (151)
T ss_pred HHHH--HCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEC--------------CCCCCCCCCHHHHHHHHHHCCC-CCC
T ss_conf 9998--6178289986786899999998632100001212--------------6667658898999999997189-997
Q ss_pred EEEEECC-CCHHHHHHHCC
Q ss_conf 9999789-23488998489
Q gi|254780960|r 238 TIAVGDG-NNDLDMLRVAG 255 (297)
Q Consensus 238 v~avGDg-~ND~pmL~~Ag 255 (297)
|++|||. .||+.|=+.||
T Consensus 133 ~l~vGD~~~~D~~~a~~aG 151 (151)
T TIGR01549 133 VLHVGDNLLNDIEGARNAG 151 (151)
T ss_pred EEEECCCHHHHHHHHHHCC
T ss_conf 8988288268776465149
No 96
>TIGR01428 HAD_type_II haloacid dehalogenase, type II; InterPro: IPR006328 These proteins catalyze the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids . They belong to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, class (subfamily) I. Note that the Type I HAD enzymes have not yet been fully characterised, but clearly utilise a substantially different catalytic mechanism and are thus unlikely to be related.; GO: 0019120 hydrolase activity acting on acid halide bonds in C-halide compounds, 0008152 metabolic process.
Probab=97.60 E-value=0.00086 Score=42.00 Aligned_cols=169 Identities=18% Similarity=0.247 Sum_probs=113.2
Q ss_pred CEEEECCCEEEEECCCCHHHH-HHHHCC--CHHHH----------HHHHHHH----CCCCCHHHHHHHHHHHHHHHHHH-
Q ss_conf 448722750265245200278-874122--32778----------8876520----24410012345568764200456-
Q gi|254780960|r 81 NLLIADMDSTMIEQECIDELA-DLIGIK--EKVSL----------ITARAMN----GEIPFQDSLRERISLFKGTSTKI- 142 (297)
Q Consensus 81 ~l~~~d~d~tli~~~~l~~~a-~~~~~~--~~~~~----------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~- 142 (297)
+.++||+=|||++-+.+-+-. +..+-. ..+.. .....|. .-.+|.+.....+..+.......
T Consensus 2 ~a~vFD~yGTL~D~~s~~~~~~~~~~~~G~~~~~~lWR~~~l~y~~~~~~mg~~w~~y~df~~~~~~al~~~~~~~~~~~ 81 (207)
T TIGR01428 2 KALVFDVYGTLVDVHSVVERFAELFGGRGLEALSQLWRQKQLEYSWLRTLMGQNWTPYKDFWDLTAEALRYLLGRLGLAS 81 (207)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 55774164357658999999885158534899999999988889888762588888888889999999999997558776
Q ss_pred ---------HHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHC--CCHHHHHCCCCHHHCCCCCCC
Q ss_conf ---------898874211345433899999984198699981672342232265508--641343101000000000015
Q gi|254780960|r 143 ---------IDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLG--FDQYYANRFIEKDDRLTGQVM 211 (297)
Q Consensus 143 ---------~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lg--i~~~~a~~~~~~~~~~~~~~~ 211 (297)
+.+.. ...++.|++...++.|+++|++++++|.+++.....+.+..| ++..+-..+..+.-+.
T Consensus 82 ~~~~~~~~~L~~~~-~~L~p~pD~~~gL~~L~~~G~~l~iLSNg~~~~~~~~~~~aGvdL~~~Fd~~lS~d~~~~----- 155 (207)
T TIGR01428 82 TLDEAAADRLAEAY-LRLPPHPDVPAGLRALKERGLRLAILSNGSPAMLKSLVKHAGVDLDLPFDAVLSADAVRA----- 155 (207)
T ss_pred CCCHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----
T ss_conf 78988899998776-358998661889999976432365214898678999999628875300001014131235-----
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE
Q ss_conf 6310521138877532331037766799997892348899848931898
Q gi|254780960|r 212 EPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF 260 (297)
Q Consensus 212 ~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~ 260 (297)
+.+ .++.=.-.++.++...++|.||-=+.-|+..=+..|+..++
T Consensus 156 -YKP----~P~vY~~~~~~lg~~p~ev~~Vasn~wD~~GA~~~G~~~~w 199 (207)
T TIGR01428 156 -YKP----APQVYQLALEALGVPPEEVLFVASNAWDLGGAKKFGFKTAW 199 (207)
T ss_pred -CCC----CHHHHHHHHHHHCCCHHHEEECCCCHHHHHHHHHCCCCEEE
T ss_conf -588----77888888876368787821101475678999776966688
No 97
>TIGR01662 HAD-SF-IIIA hydrolase, HAD-superfamily, subfamily IIIA; InterPro: IPR006549 This group of proteins is a part of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class III subfamilies are characterised by the lack of any domains located either between the first and second conserved catalytic motifs (as in the Class I subfamilies) or between the second and third conserved catalytic motifs (as in the Class II subfamilies) of the superfamily domain , . The IIIA subfamily contains five major clades: histidinol-phosphatase , histidinol-phosphatase-related protein, DNA 3-phosphatase and sequences related to YqeG and YrbI..
Probab=97.53 E-value=0.00043 Score=43.84 Aligned_cols=107 Identities=22% Similarity=0.325 Sum_probs=69.3
Q ss_pred CCCCCHHH--HHHHHH-HCCCEEEEEECCC----------------HHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCC
Q ss_conf 34543389--999998-4198699981672----------------3422322655086413431010000000000156
Q gi|254780960|r 152 TYNPGGYE--LVHTMK-QNGASTLLVTGGF----------------SIFARFIAQHLGFDQYYANRFIEKDDRLTGQVME 212 (297)
Q Consensus 152 ~~~~~~~~--~i~~l~-~~g~~v~iisg~~----------------~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~ 212 (297)
.+.+++++ .++.++ ..|++++++|... ..-+..+.+++++..-+--..+.....-.|...+
T Consensus 28 ~~~~~~~~Gl~~~~l~W~~G~~v~i~tN~~Gigrg~~~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~GkG~~~~ 107 (171)
T TIGR01662 28 ELYPGVIDGLALAELKWKAGYKVVIVTNQSGIGRGYFSDAVSVREVSERVARRLEELGVPIDVLYACPHHHSDGKGEAVE 107 (171)
T ss_pred HHCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 40688600189998887459769999788742111268078999999999988876088256888850106677777666
Q ss_pred CCCCHHH--HHHHHHHHHHHH---CCCCCEEEEEEC-CC---CHHHHHHHCCCEE
Q ss_conf 3105211--388775323310---377667999978-92---3488998489318
Q gi|254780960|r 213 PIIDGTA--KSQILLEAIQKL---QINPEDTIAVGD-GN---NDLDMLRVAGYGV 258 (297)
Q Consensus 213 ~~~~~~~--k~~~~~~l~~~~---~~~~~~v~avGD-g~---ND~pmL~~AgvGV 258 (297)
-.....- ++.....+++++ .++.++++|||| .. +|+.+-+.+|.-.
T Consensus 108 ~c~~RKPlC~~g~~~~~~~~~NdG~~~~~~~~~vGD~~~~L~~D~~~~~~~G~~~ 162 (171)
T TIGR01662 108 DCSCRKPLCKPGMFLEALKRLNDGEIDPKESVVVGDQDLSLSTDLEAAKRVGLAT 162 (171)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCC
T ss_conf 8885578577889999998588998780388887116767221267886268621
No 98
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase; InterPro: IPR012813 Members of this family are mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC). It acts sequentially after mannosyl-3-phosphoglycerate synthase (2.4.1.217 from EC) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.; GO: 0050531 mannosyl-3-phosphoglycerate phosphatase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm.
Probab=97.48 E-value=0.00011 Score=47.46 Aligned_cols=44 Identities=20% Similarity=0.422 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHCCCC--CEEEEEECCCCHHHHHHHCCCEEEE
Q ss_conf 2113887753233103776--6799997892348899848931898
Q gi|254780960|r 217 GTAKSQILLEAIQKLQINP--EDTIAVGDGNNDLDMLRVAGYGVAF 260 (297)
Q Consensus 217 ~~~k~~~~~~l~~~~~~~~--~~v~avGDg~ND~pmL~~AgvGVA~ 260 (297)
+..|+++++.+.+-+..+. ..++++|||.||+|||...|..+-+
T Consensus 202 ~~DKG~A~~~L~~ly~~~~~~~~~vg~GDS~ND~Pm~~~VD~af~V 247 (248)
T TIGR02461 202 GSDKGKAIKRLLELYRLRLGAIETVGLGDSENDFPMLEAVDLAFLV 247 (248)
T ss_pred CCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCCCEEC
T ss_conf 7883789999997046787867999831884561366427724251
No 99
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.47 E-value=0.00025 Score=45.30 Aligned_cols=86 Identities=21% Similarity=0.278 Sum_probs=68.1
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHH--HHHHHHH
Q ss_conf 13454338999999841986999816723422322655086413431010000000000156310521138--8775323
Q gi|254780960|r 151 ITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKS--QILLEAI 228 (297)
Q Consensus 151 ~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~--~~~~~l~ 228 (297)
....|..++.+..++.+|+++.++|.....=+...++.+|+++++. ..|| ..+.+.+
T Consensus 45 ~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~---------------------A~KP~~~~fr~Al 103 (175)
T COG2179 45 PDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYR---------------------AKKPFGRAFRRAL 103 (175)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCEEEC---------------------CCCCCHHHHHHHH
T ss_conf 9899999999999986597799981897888876665259723402---------------------2596279999999
Q ss_pred HHHCCCCCEEEEEECCC-CHHHHHHHCCCE
Q ss_conf 31037766799997892-348899848931
Q gi|254780960|r 229 QKLQINPEDTIAVGDGN-NDLDMLRVAGYG 257 (297)
Q Consensus 229 ~~~~~~~~~v~avGDg~-ND~pmL~~AgvG 257 (297)
+.++++.++|+||||.. .|+-.=..+|+-
T Consensus 104 ~~m~l~~~~vvmVGDqL~TDVlggnr~G~~ 133 (175)
T COG2179 104 KEMNLPPEEVVMVGDQLFTDVLGGNRAGMR 133 (175)
T ss_pred HHCCCCHHHEEEECCHHHHHHHCCCCCCCE
T ss_conf 980998368799851255666413414727
No 100
>pfam05822 UMPH-1 Pyrimidine 5'-nucleotidase (UMPH-1). This family consists of several eukaryotic pyrimidine 5'-nucleotidase proteins. P5'N-1, also known as uridine monophosphate hydrolase-1 (UMPH-1), is a member of a large functional group of enzymes, characterized by the ability to dephosphorylate nucleic acids. P5'N-1 catalyses the dephosphorylation of pyrimidine nucleoside monophosphates to the corresponding nucleosides. Deficiencies in this proteins function can lead to several different disorders in humans.
Probab=97.44 E-value=0.0015 Score=40.60 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHH--HHH-HHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCC----HHHHH
Q ss_conf 0123455687642--004-5689887421134543389999998419869998167234223226550864----13431
Q gi|254780960|r 125 QDSLRERISLFKG--TST-KIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFD----QYYAN 197 (297)
Q Consensus 125 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~----~~~a~ 197 (297)
.+.|.+...++.. ... .+..........+|.+..+.+..|.+..+-+.+.|+|...+.+.+-++.+.. ++.+|
T Consensus 60 ~EWw~k~h~Ll~~~~~~k~~i~~~v~~s~~~LRdg~~~ff~~L~~~~IP~lIfSAGlgdvIe~vl~q~~~~~~Nv~vvSN 139 (246)
T pfam05822 60 VEWWGKSHDLLIEQGLQKDAIAEVVKESDIMLRDGYDEFFDKLQQLNIPVLIFSAGLGDVLEEVLRQANVYHPNVKVVSN 139 (246)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 99999999999966979999999999740788765799999998669988999466179999999865867787089860
Q ss_pred CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHH--HHCCCCCEEEEEECCCCHHHHHHHC-----CCEEEE-CC-----CH
Q ss_conf 01000000000015631052113887753233--1037766799997892348899848-----931898-79-----57
Q gi|254780960|r 198 RFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQ--KLQINPEDTIAVGDGNNDLDMLRVA-----GYGVAF-HA-----KP 264 (297)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~--~~~~~~~~v~avGDg~ND~pmL~~A-----gvGVA~-~a-----~~ 264 (297)
...+++........++.++--.|-+...+-.. .......+|+-.||+..|+.|-.-. =+.|+| |- -+
T Consensus 140 ~m~Fd~~G~l~gfk~~lIH~~NKn~~~l~~~~yf~~~~~R~NiiLlGDslGD~~MadGv~~~~~ilkIGFLnd~ve~~l~ 219 (246)
T pfam05822 140 FMDFDDNGVLNGFKGPLIHTFNKNESVLDGTEYFDQLKKRTNIILLGDSLGDLGMADGVPSVEHILKIGFLNDKVEENLD 219 (246)
T ss_pred EEEECCCCCEEECCCCEEEEECCCCHHCCCCHHHHHCCCCCEEEEECCCCCCCCHHCCCCCCCCEEEEEECCCCHHHHHH
T ss_conf 48887898374125762477537601204743443005675179956752322131277665646899861002898999
Q ss_pred HHHHHCCEEEEC-CCHHHHHHHCC
Q ss_conf 899858989956-98327678709
Q gi|254780960|r 265 ALAKQAKIRIDH-SDLEALLYIQG 287 (297)
Q Consensus 265 ~v~~~Ad~~~~~-~dl~~~l~~~g 287 (297)
...+.=|+++.. ..+..++.+|.
T Consensus 220 ~Y~~~yDIVlv~D~tm~v~~~il~ 243 (246)
T pfam05822 220 KYMDSYDIVLVDDETMDVPNAILQ 243 (246)
T ss_pred HHHHHCCEEEECCCCCHHHHHHHH
T ss_conf 988725989978998329999999
No 101
>TIGR01509 HAD-SF-IA-v3 HAD-superfamily hydrolase, subfamily IA, variant 3; InterPro: IPR006402 This group of sequences represent part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs . The subfamilies are defined based on the location and the observed or predicted fold of a so-called capping domain , or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single HMM is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but can be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. .
Probab=97.28 E-value=0.0089 Score=35.78 Aligned_cols=151 Identities=19% Similarity=0.292 Sum_probs=88.6
Q ss_pred EEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 48722750265245200278874122327788876520244100123-45568764200456898874211345433899
Q gi|254780960|r 82 LLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSL-RERISLFKGTSTKIIDSLLEKKITYNPGGYEL 160 (297)
Q Consensus 82 l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (297)
.++||+|+||+..+.-..-. ...... ...........+.+.. ....... ..............+++|++...
T Consensus 1 ~~~FD~DgvL~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 73 (156)
T TIGR01509 1 AILFDLDGVLVDTELGLVPD-ELGVSA----RLELALTLFKEYGRTDSPEDAQLL--KKQLFLDEILEEELKPLPGVRKL 73 (156)
T ss_pred CEEEECCCEEECCCCCCCHH-HHHHHH----HHHHHHHHHHHHCCCCCHHHHHHH--HHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 75871077665276652027-788766----567777776541121126889864--45456888886303556038999
Q ss_pred HHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEE
Q ss_conf 99998419869998167234223226550864134310100000000001563105211388775323310377-66799
Q gi|254780960|r 161 VHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQIN-PEDTI 239 (297)
Q Consensus 161 i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~-~~~v~ 239 (297)
++.+++.| +.++|..+....-.+.+.... .+. .....+.-.++.....+++++.+ .++|+
T Consensus 74 l~~L~~~g--~~~~t~~~~~~~~~l~~~f~~--~~~---------------~~~~~~KP~p~~~~~~~~~~g~~~P~~~~ 134 (156)
T TIGR01509 74 LEALRARG--VALLTNSPRAVRLGLRDAFDV--VID---------------EDVGRGKPDPDIYLQALKKLGLKPPSECL 134 (156)
T ss_pred HHHHHHCC--EEEEECCCHHHHHHHHHHCCE--EEE---------------ECCCCCCCCHHHHHHHHHHHCCCCCHHEE
T ss_conf 99885688--589877604445212443260--333---------------03578997589999999982898605377
Q ss_pred EEECCCCHHHHHHHCCCEE
Q ss_conf 9978923488998489318
Q gi|254780960|r 240 AVGDGNNDLDMLRVAGYGV 258 (297)
Q Consensus 240 avGDg~ND~pmL~~AgvGV 258 (297)
.|=|+.+=+.+-+.+|+-+
T Consensus 135 ~~dD~~~gi~aa~~~G~~~ 153 (156)
T TIGR01509 135 FVDDSPAGIEAAKAAGMHT 153 (156)
T ss_pred EECCCHHHHHHHHHCCCEE
T ss_conf 7515887899998669748
No 102
>PRK09456 phosphatase; Provisional
Probab=97.24 E-value=0.0093 Score=35.66 Aligned_cols=175 Identities=14% Similarity=0.179 Sum_probs=98.0
Q ss_pred CEEEECCCEEEEECCCCHHHH---HHHHCCC-HHH------HHHHHHHHCCCCCHHHHHHHHHHHH-HHHHHHHHH-HHH
Q ss_conf 448722750265245200278---8741223-277------8887652024410012345568764-200456898-874
Q gi|254780960|r 81 NLLIADMDSTMIEQECIDELA---DLIGIKE-KVS------LITARAMNGEIPFQDSLRERISLFK-GTSTKIIDS-LLE 148 (297)
Q Consensus 81 ~l~~~d~d~tli~~~~l~~~a---~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 148 (297)
.+++||+.++|+.-..-..+. +..+... .+. ..-.+..+|.+...++......... ......+.. ...
T Consensus 1 ~~~IFDlG~VLv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~G~is~e~f~~~~~~~~~~~~~~e~~~~~w~~ 80 (199)
T PRK09456 1 MLYIFDLGNVIVDIDFNRVLGVWSDLSRVPLATLKKSFTMGEAFHQHERGEISDEAFAEALCHEMALPLSYEQFAHGWQA 80 (199)
T ss_pred CEEEECCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 95996079963868879999999863599889999863788278998779999999999999870899889999999999
Q ss_pred HHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHH--HHHHH
Q ss_conf 2113454338999999841986999816723422322655086413431010000000000156310521138--87753
Q gi|254780960|r 149 KKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKS--QILLE 226 (297)
Q Consensus 149 ~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~--~~~~~ 226 (297)
....+.|++.++++.++.+|++++++|..+........+++. .... ..+..+. ..-.+..|| +.-+.
T Consensus 81 ~~~~~~p~~~~ll~~Lk~~gy~l~lLSNt~~~~~~~~~~~~~--~~~~----~fd~~~~-----S~~~g~~KPd~~IY~~ 149 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYP--EVRA----AADHIYL-----SQDLGMRKPEARIYQH 149 (199)
T ss_pred HHCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCH--HHHH----HCCEEEE-----EEECCCCCCCHHHHHH
T ss_conf 863677779999999997699489970897565789998776--8898----6897999-----6464886897999999
Q ss_pred HHHHHCCCCCEEEEEECCCCHHHHHHHCCCE-EEECCCHHH
Q ss_conf 2331037766799997892348899848931-898795789
Q gi|254780960|r 227 AIQKLQINPEDTIAVGDGNNDLDMLRVAGYG-VAFHAKPAL 266 (297)
Q Consensus 227 l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~~a~~~v 266 (297)
++++++...++|+++-|..--+.+=+..|+- |-|.....+
T Consensus 150 ~l~~~~l~P~e~lFiDD~~eNv~aA~~lGi~~i~~t~~~~l 190 (199)
T PRK09456 150 VLQAEGFSAADAVFFDDNADNIEGANQLGITSILVKDKTTI 190 (199)
T ss_pred HHHHCCCCHHHEEEECCCHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 99982979668688659988899999869979997888899
No 103
>KOG2914 consensus
Probab=97.23 E-value=0.01 Score=35.42 Aligned_cols=184 Identities=21% Similarity=0.304 Sum_probs=104.9
Q ss_pred CCCCEEEECCCEEEEECCCCH-----HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH----------HHHHHHHHHH
Q ss_conf 534448722750265245200-----2788741223277888765202441001234556----------8764200456
Q gi|254780960|r 78 RRKNLLIADMDSTMIEQECID-----ELADLIGIKEKVSLITARAMNGEIPFQDSLRERI----------SLFKGTSTKI 142 (297)
Q Consensus 78 ~~~~l~~~d~d~tli~~~~l~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 142 (297)
.....+.||+||+++..+.+. ++...+|... -..+-.+.| |....+ ..+.-+ ... ......
T Consensus 8 ~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~-~~~~~~~~m-G~~~~e-aa~~~~~~~~dp~s~ee~~-~e~~~~ 83 (222)
T KOG2914 8 LKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPY-PWDVKVKSM-GKRTSE-AARLFVKKLPDPVSREEFN-KEEEEI 83 (222)
T ss_pred CCEEEEEEECCCCEEECHHHHHHHHHHHHHHCCCCC-CHHHHHHHC-CCCHHH-HHHHHHHHCCCCCCHHHHH-HHHHHH
T ss_conf 650157886477577027779999999999839998-088978860-897799-9999986368988999999-999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHC-CCHHHHHCCCCHHHCCCCCCCCCCC-CHHHH
Q ss_conf 898874211345433899999984198699981672342232265508-6413431010000000000156310-52113
Q gi|254780960|r 143 IDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLG-FDQYYANRFIEKDDRLTGQVMEPII-DGTAK 220 (297)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lg-i~~~~a~~~~~~~~~~~~~~~~~~~-~~~~k 220 (297)
..... ....+.||+.++++.|+..|+.+.+.|+......+..-+..+ +...+......++ +.+ .+...
T Consensus 84 ~~~~~-~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~i~~~f~~~v~~d~---------~~v~~gKP~ 153 (222)
T KOG2914 84 LDRLF-MNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDD---------PEVKNGKPD 153 (222)
T ss_pred HHHHC-CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC---------CCCCCCCCC
T ss_conf 99853-44536872999999998579976687458710489998775669874487712678---------535579999
Q ss_pred HHHHHHHHHHHCCCC-CEEEEEECCCCHHHHHHHCCCEEEECCC----HHHHHHCCEEEE
Q ss_conf 887753233103776-6799997892348899848931898795----789985898995
Q gi|254780960|r 221 SQILLEAIQKLQINP-EDTIAVGDGNNDLDMLRVAGYGVAFHAK----PALAKQAKIRID 275 (297)
Q Consensus 221 ~~~~~~l~~~~~~~~-~~v~avGDg~ND~pmL~~AgvGVA~~a~----~~v~~~Ad~~~~ 275 (297)
|+.-..-..+++... +.|..+.|+.+=+.|-+.||.-+=|.+. ....+.+++++.
T Consensus 154 Pdi~l~A~~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vv~v~~~~~~~~~~~~~~~~~~ 213 (222)
T KOG2914 154 PDIYLKAAKRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPDLSNLFSAGATLILE 213 (222)
T ss_pred CHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHCCCEEEEECCCCCCHHHHHCCCEECC
T ss_conf 569999998539998411589778788899999669847985587726566521211023
No 104
>PRK06769 hypothetical protein; Validated
Probab=97.22 E-value=0.001 Score=41.52 Aligned_cols=125 Identities=17% Similarity=0.165 Sum_probs=74.6
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECCCHH-----HHHHHHH---HHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 134543389999998419869998167234-----2232265---50864134310100000000001563105211388
Q gi|254780960|r 151 ITYNPGGYELVHTMKQNGASTLLVTGGFSI-----FARFIAQ---HLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQ 222 (297)
Q Consensus 151 ~~~~~~~~~~i~~l~~~g~~v~iisg~~~~-----~~~~ia~---~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~ 222 (297)
..+.|++.+++..|+++|+.+++||.=.-. +.+.+-+ ..+++.++......+ ....-..-++-
T Consensus 27 ~~~~~~~~~ai~~L~~~g~~i~vvTNQsgI~rG~~t~~d~~~~l~~~~id~iy~CPh~~~---------~~c~cRKP~pG 97 (175)
T PRK06769 27 FTLFPFTKASLQKLKAKNIKIFSFTNQPGIADGIATVADFVQELKGFGFDDIYVCPHKHG---------DGCECRKPSTG 97 (175)
T ss_pred EEECCCHHHHHHHHHHCCCEEEEEECCCHHCCCCCCHHHHHHHHCCCCCCEEEECCCCCC---------CCCCCCCCCCH
T ss_conf 378788899999999869959999688211368779999999974999898998899996---------78989899878
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCE-EEE--C-CCHHHH---H-----HCCEEEECCCHH-HHHHHC
Q ss_conf 77532331037766799997892348899848931-898--7-957899---8-----589899569832-767870
Q gi|254780960|r 223 ILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG-VAF--H-AKPALA---K-----QAKIRIDHSDLE-ALLYIQ 286 (297)
Q Consensus 223 ~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~--~-a~~~v~---~-----~Ad~~~~~~dl~-~~l~~~ 286 (297)
.+.+.+++++++++++.||||...|+.+=+.||+- |-+ | +.+... + .+|++.+ ||. ++-|+|
T Consensus 98 Mi~~a~~~~~idl~~s~~IGD~~sDi~aa~~ag~k~IlV~TG~G~~~~~~~~~~~~~~~pd~i~~--dl~~Av~~Il 172 (175)
T PRK06769 98 MLLQAAEKHGLDLTQCAVIGDRWTDIVAGAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAE--NFEDATNWVL 172 (175)
T ss_pred HHHHHHHHCCCCHHHCEEEECCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCCCCEEHH--HHHHHHHHHH
T ss_conf 99999998098666537996989999999987991899827988301444320245789986043--0999999998
No 105
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.20 E-value=0.0022 Score=39.53 Aligned_cols=112 Identities=13% Similarity=0.222 Sum_probs=67.2
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHC---CCHHHHHCCCCHHHCCCCCCC------CCCCCHHHH
Q ss_conf 11345433899999984198699981672342232265508---641343101000000000015------631052113
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLG---FDQYYANRFIEKDDRLTGQVM------EPIIDGTAK 220 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lg---i~~~~a~~~~~~~~~~~~~~~------~~~~~~~~k 220 (297)
...+.|++.++++.+++.|+.+++||.=.- +.+..-.+-. +.+...+.+......+..-+. +...-..-+
T Consensus 28 ~f~f~pgv~~aLk~L~~~GY~liVVTNQsG-IgrG~~t~ed~~~ih~~m~~~L~~~Gi~id~Iy~CPH~p~d~C~CRKP~ 106 (354)
T PRK05446 28 KLAFEPGVIPALLKLQKAGYKLVMVTNQDG-LGTDSFPQEDFDGPHNLMMQIFESQGIKFDDVLICPHFPEDNCSCRKPK 106 (354)
T ss_pred HEEECCCHHHHHHHHHHCCCEEEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 948876789999999987998999948851-1479889999999999999999977973475998899885779889996
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCE-EEECC
Q ss_conf 8877532331037766799997892348899848931-89879
Q gi|254780960|r 221 SQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG-VAFHA 262 (297)
Q Consensus 221 ~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~~a 262 (297)
+-.+...++.+++++++..|+||-..|+.+=+.+|+- |-++.
T Consensus 107 ~GMl~~a~~~~~IDl~~S~mIGDr~tDIe~A~N~G~kgi~~~~ 149 (354)
T PRK05446 107 TGLVEEYLAEGAIDLANSYVIGDRETDIQLAENMGIRGLQYDR 149 (354)
T ss_pred HHHHHHHHHHCCCCHHHEEEEECCHHHHHHHHHCCCCEEEECC
T ss_conf 7999999985599745418980758889999968982698589
No 106
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.18 E-value=0.0012 Score=41.08 Aligned_cols=123 Identities=24% Similarity=0.277 Sum_probs=74.5
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECCCH------------HHHHHHHHHH---C--CCHH-HHHCCCCHHHCCCCCCCC
Q ss_conf 13454338999999841986999816723------------4223226550---8--6413-431010000000000156
Q gi|254780960|r 151 ITYNPGGYELVHTMKQNGASTLLVTGGFS------------IFARFIAQHL---G--FDQY-YANRFIEKDDRLTGQVME 212 (297)
Q Consensus 151 ~~~~~~~~~~i~~l~~~g~~v~iisg~~~------------~~~~~ia~~l---g--i~~~-~a~~~~~~~~~~~~~~~~ 212 (297)
..+.|++.++++.++..|+.+++||.=.- .+-..+.+.+ | |+.+ +|...+. +
T Consensus 28 ~~~~~g~~~al~~l~~~g~~~~ivTNQsGI~rG~~t~~~~~~i~~~m~~~l~~~g~~id~iy~CPh~p~----------~ 97 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGDLDGIYYCPHHPE----------D 97 (181)
T ss_pred EEECCCHHHHHHHHHHCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC----------C
T ss_conf 578778899999999879969999587134258677999999999999999976994313787689971----------4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCE-EEE--C-CCHHHHHHCC---EEEECCCHHHHHHH
Q ss_conf 310521138877532331037766799997892348899848931-898--7-9578998589---89956983276787
Q gi|254780960|r 213 PIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG-VAF--H-AKPALAKQAK---IRIDHSDLEALLYI 285 (297)
Q Consensus 213 ~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG-VA~--~-a~~~v~~~Ad---~~~~~~dl~~~l~~ 285 (297)
...-..-++-.+...+++++++.+++.||||...|+.+=+.||+- |-+ + +....++... ++.+ ||.++.=+
T Consensus 98 ~c~cRKP~pGMl~~a~~~~~id~~~s~mIGD~~sDi~aa~~aG~k~ILV~TG~G~~~~~~~~~~~~~i~~--~l~d~~~~ 175 (181)
T PRK08942 98 GCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVKTLAEGAAPGTWVLD--SLADVPAA 175 (181)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCHHHCEEECCCHHHHHHHHHCCCEEEEECCCCCCEEHHHCCCCCCEEEC--CHHHHHHH
T ss_conf 4778899849999999980988421847659899999999879908997789972007445999887331--89999999
No 107
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit; InterPro: IPR014098 Members of this protein family are the delta subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases..
Probab=97.16 E-value=0.00036 Score=44.31 Aligned_cols=97 Identities=21% Similarity=0.278 Sum_probs=79.8
Q ss_pred HHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99984198699981672342232265508641343101000000000015631052113887753233103776679999
Q gi|254780960|r 162 HTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAV 241 (297)
Q Consensus 162 ~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~av 241 (297)
-.|+-.|+.+.++|....-.+++-++++.+...+-. +. .|.+.-.++.+..+++-.++..+
T Consensus 44 ivlqlCG~~vaiitskksGavrhraeelkikrfheG-----------------ik--kktePyaqmleemnisdaevCyv 104 (169)
T TIGR02726 44 IVLQLCGVEVAIITSKKSGAVRHRAEELKIKRFHEG-----------------IK--KKTEPYAQMLEEMNISDAEVCYV 104 (169)
T ss_pred EEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHH-----------------HC--CCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 898752606899851355530001445333334310-----------------01--25555788887505554304663
Q ss_pred ECCCCHHHHHHHCCCEEEE-CCCHHHHHHCCEEEECC
Q ss_conf 7892348899848931898-79578998589899569
Q gi|254780960|r 242 GDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHS 277 (297)
Q Consensus 242 GDg~ND~pmL~~AgvGVA~-~a~~~v~~~Ad~~~~~~ 277 (297)
||-.-|++|+|..|+.||+ .|...+||.|.++....
T Consensus 105 GddlvdlsmmkrvGlavavGdavadvke~a~yvttar 141 (169)
T TIGR02726 105 GDDLVDLSMMKRVGLAVAVGDAVADVKEVAAYVTTAR 141 (169)
T ss_pred CCHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHCCC
T ss_conf 3104566665452010120024666777655421046
No 108
>TIGR01544 HAD-SF-IE HAD-superfamily (subfamily IE) hydrolase, TIGR01544; InterPro: IPR006434 This family is a small group of metazoan sequences with one sequence from Arabidopsis thaliana. The sequences from mouse are annotated as pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the human homolog. However, no such annotation can currently be found for this gene. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB..
Probab=97.12 E-value=0.001 Score=41.59 Aligned_cols=177 Identities=16% Similarity=0.223 Sum_probs=108.7
Q ss_pred CCCCCCEEEECCCEEEEECC------------------------CCHHHHHHHHCCCHHHHHHHHHHHCCCCCHH-HHHH
Q ss_conf 55534448722750265245------------------------2002788741223277888765202441001-2345
Q gi|254780960|r 76 ENRRKNLLIADMDSTMIEQE------------------------CIDELADLIGIKEKVSLITARAMNGEIPFQD-SLRE 130 (297)
Q Consensus 76 ~~~~~~l~~~d~d~tli~~~------------------------~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 130 (297)
++..+..++-|+|-||.... +-.++.....+..-++-.....+..++++-. .|.+
T Consensus 24 GGa~k~~iisDFDyTlsrf~~e~G~r~pt~hgifd~nc~~l~~e~~~k~~~Lk~KYypIE~dP~lt~eEK~pyM~eWwtk 103 (287)
T TIGR01544 24 GGAEKLQIISDFDYTLSRFATEDGERVPTSHGIFDDNCKRLKEELKKKLVKLKEKYYPIEVDPVLTVEEKVPYMVEWWTK 103 (287)
T ss_pred CCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCHHHCCCHHHHEECC
T ss_conf 68765689852364122323115860552001022210017467788898886245544506888654224200010035
Q ss_pred HHHHHHH--HHH-HHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHC-CC----HHHHHCCCCH
Q ss_conf 5687642--004-56898874211345433899999984198699981672342232265508-64----1343101000
Q gi|254780960|r 131 RISLFKG--TST-KIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLG-FD----QYYANRFIEK 202 (297)
Q Consensus 131 ~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lg-i~----~~~a~~~~~~ 202 (297)
...++-+ .+. .+..-.......++++..+-++.|+++++-+.+.|.|.--.++.+-++-+ .. .+.+|.+.++
T Consensus 104 Sh~L~v~~~f~k~~i~~iv~~s~~~lkdg~e~Ff~~Lq~h~IP~~iFSAGiGn~~e~vlrQa~Gv~hpNvkvvSNf~~FD 183 (287)
T TIGR01544 104 SHELLVNEKFDKAKIEEIVAKSDVVLKDGAEDFFEKLQRHSIPVLIFSAGIGNVVEEVLRQALGVLHPNVKVVSNFLDFD 183 (287)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCCCC
T ss_conf 55200067687546999998756766247167999987458989999357217999999863588899743886321047
Q ss_pred HHCCCCCCCCCCCCHHHHH-HHHHHHHHHHC--CCCCEEEEEECCCCHHHHHH
Q ss_conf 0000000156310521138-87753233103--77667999978923488998
Q gi|254780960|r 203 DDRLTGQVMEPIIDGTAKS-QILLEAIQKLQ--INPEDTIAVGDGNNDLDMLR 252 (297)
Q Consensus 203 ~~~~~~~~~~~~~~~~~k~-~~~~~l~~~~~--~~~~~v~avGDg~ND~pmL~ 252 (297)
.+.......++.++--+|- ..+.+-.+.++ ....+++..|||..|+.|=.
T Consensus 184 edg~l~gF~~plIHtFnKn~~v~~~~teyf~~~~~r~niIllGDS~GD~~Ma~ 236 (287)
T TIGR01544 184 EDGVLKGFKEPLIHTFNKNEDVLQKETEYFDDVKDRSNIILLGDSIGDLDMAS 236 (287)
T ss_pred CCCCHHHCCCCCEEEECCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCHHC
T ss_conf 32202221787147760775101114303554315740899708714440214
No 109
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase homolog; InterPro: IPR012815 This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbour-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (IPR012812 from INTERPRO). Members of this family are likely to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.; GO: 0050531 mannosyl-3-phosphoglycerate phosphatase activity, 0005737 cytoplasm.
Probab=97.02 E-value=0.0006 Score=42.96 Aligned_cols=186 Identities=16% Similarity=0.141 Sum_probs=94.9
Q ss_pred HHHHHHHHHCCCCCEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCC-EEECCCCCCCCCEEEECCCEEEEECCCC-
Q ss_conf 99999986078883573188049998268889489999999840216863-4621455553444872275026524520-
Q gi|254780960|r 20 LVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSIIADKPID-LIIHRHENRRKNLLIADMDSTMIEQECI- 97 (297)
Q Consensus 20 ~~~~i~~~~~~~~~~~La~~~A~e~~~~~~~~~~~~~~~l~~~~~~~~~d-~~~~~~~~~~~~l~~~d~d~tli~~~~l- 97 (297)
....++...+.+.++.+|+... .+++..+....+++ -.+...++. .|.++..
T Consensus 21 A~~~l~~L~e~~iPvI~CtSKT--------------AAEv~~lr~~L~L~~~PyIvENGa------------~I~g~~~~ 74 (224)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKT--------------AAEVEALRKALGLTGDPYIVENGA------------AIHGETLW 74 (224)
T ss_pred HHHHHHHHHHCCCCEEECCCCC--------------HHHHHHHHHHHCCCCCCEEEECCE------------EEECCCCC
T ss_conf 7999999997589764258730--------------789999999848898981776460------------56775214
Q ss_pred ---H-HHHHHHHCCCHHHHHHHHHH-----HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
Q ss_conf ---0-27887412232778887652-----02441001234556876420045689887421134543389999998419
Q gi|254780960|r 98 ---D-ELADLIGIKEKVSLITARAM-----NGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNG 168 (297)
Q Consensus 98 ---~-~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g 168 (297)
+ ......|....+-..--... -.-..+++...+.+.-+.|. .....+.-+.+.
T Consensus 75 ~~~~~yp~~~~G~~y~~l~~~L~~l~~~~~f~l~~l~d~~daei~ElTGL------------------~~~~~~la~~r~ 136 (224)
T TIGR02463 75 REEPEYPRLILGISYEILRLVLEELSEELSFKLTPLDDLSDAEIAELTGL------------------SGEQLALAQDRE 136 (224)
T ss_pred CCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC------------------CHHHHHHHHHHC
T ss_conf 56666520213885378999999998862588778786445667553077------------------787999986321
Q ss_pred CEEEEEECCCH---HHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC---CCEEEEEE
Q ss_conf 86999816723---4223226550864134310100000000001563105211388775323310377---66799997
Q gi|254780960|r 169 ASTLLVTGGFS---IFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQIN---PEDTIAVG 242 (297)
Q Consensus 169 ~~v~iisg~~~---~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~---~~~v~avG 242 (297)
.-+-++--+.. .-...+...+|+..+.++.+ ....-...+|.++...+...++.+ -=.|++-|
T Consensus 137 ~Svpll~~p~~~~~~~~~~~~~~~Gl~~~~GnRm-----------~H~Lg~~~~KG~A~n~lk~~~~~~~g~~~k~lgLG 205 (224)
T TIGR02463 137 ASVPLLWRPSDSRMERFTALLADLGLAIVRGNRM-----------SHVLGASSSKGKAANWLKKQYNEPYGTDVKVLGLG 205 (224)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCE-----------EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 6737779686645899999998727003207713-----------46627788811799999999867526896698617
Q ss_pred CCCCHHHHHHHCCCEEEE
Q ss_conf 892348899848931898
Q gi|254780960|r 243 DGNNDLDMLRVAGYGVAF 260 (297)
Q Consensus 243 Dg~ND~pmL~~AgvGVA~ 260 (297)
||-||+|.|..+|+.|=+
T Consensus 206 DsPNDlPLL~v~D~Avvi 223 (224)
T TIGR02463 206 DSPNDLPLLEVADYAVVI 223 (224)
T ss_pred CCCCCHHHHHHCCEEEEC
T ss_conf 885551357458823652
No 110
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase; InterPro: IPR010237 This family of proteins includes the SDT1/SSM1 gene from yeast, which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily..
Probab=96.85 E-value=0.0095 Score=35.60 Aligned_cols=100 Identities=17% Similarity=0.268 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCC--------CCCCCCCCCHHHHHH
Q ss_conf 4543389999998419--869998167234223226550864134310100000000--------001563105211388
Q gi|254780960|r 153 YNPGGYELVHTMKQNG--ASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLT--------GQVMEPIIDGTAKSQ 222 (297)
Q Consensus 153 ~~~~~~~~i~~l~~~g--~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~k~~ 222 (297)
+.|..++++..|++.| .|.++.|.+...-+.+..++|||.+.|-....++..... . ..++.+-..-.++
T Consensus 87 pdp~L~~~L~~LpqsGK~~Rk~iFTN~~~~Ha~r~l~~LGi~d~FD~i~~~~~~~~~lfGeaP~ss-dd~~~~~~KP~~~ 165 (205)
T TIGR01993 87 PDPELRNLLLRLPQSGKKGRKIIFTNGDRAHARRALNRLGIEDCFDGIFDIDTANPDLFGEAPYSS-DDETLLIPKPSPE 165 (205)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCHHHCCCCEEEHHHHCHHHCCCCCCCC-CCCCCCCCCCCHH
T ss_conf 898899999973412655556776158789999999864721204642305120412316888788-8876312088889
Q ss_pred HHHHHHHHHC-CCCCEEEEEECCCCHHHHHHH
Q ss_conf 7753233103-776679999789234889984
Q gi|254780960|r 223 ILLEAIQKLQ-INPEDTIAVGDGNNDLDMLRV 253 (297)
Q Consensus 223 ~~~~l~~~~~-~~~~~v~avGDg~ND~pmL~~ 253 (297)
+-...+...+ .+.++++|+=|+.-=+..=|+
T Consensus 166 ay~~~~~~~~~vd~~~~~f~DDS~rNi~~~ka 197 (205)
T TIGR01993 166 AYEKALREAGVVDPERAIFFDDSARNIAAAKA 197 (205)
T ss_pred HHHHHHHHHCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 99999998558872001753046878887887
No 111
>KOG3085 consensus
Probab=96.80 E-value=0.019 Score=33.71 Aligned_cols=179 Identities=20% Similarity=0.296 Sum_probs=95.5
Q ss_pred CCCCEEEECCCEEEEE--CCC---CHHHHHHHHCCCHHHHH---HHHHH-------------HCCCCCHHHHHHHHHHHH
Q ss_conf 5344487227502652--452---00278874122327788---87652-------------024410012345568764
Q gi|254780960|r 78 RRKNLLIADMDSTMIE--QEC---IDELADLIGIKEKVSLI---TARAM-------------NGEIPFQDSLRERISLFK 136 (297)
Q Consensus 78 ~~~~l~~~d~d~tli~--~~~---l~~~a~~~~~~~~~~~~---~~~~~-------------~~~~~~~~~~~~~~~~~~ 136 (297)
.+.+++.||+.+||+. ... .-.+++..|....-..+ ....- .+.+...+.+...+....
T Consensus 5 ~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~f 84 (237)
T KOG3085 5 MRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVESTF 84 (237)
T ss_pred CCEEEEEEECCCCEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 42579999578723403785188999999995898787887676667787621358854545786668999999999983
Q ss_pred HHHHH----HHHH------HHH---HHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHH
Q ss_conf 20045----6898------874---2113454338999999841986999816723422322655086413431010000
Q gi|254780960|r 137 GTSTK----IIDS------LLE---KKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKD 203 (297)
Q Consensus 137 ~~~~~----~~~~------~~~---~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~ 203 (297)
..... .... ... ..-.+-.++.++++.+++.|..+.++|---+.. +.+...+|+...+.-...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~-~~~l~~~~l~~~fD~vv~--- 160 (237)
T KOG3085 85 GKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRL-RLLLLPLGLSAYFDFVVE--- 160 (237)
T ss_pred CCCCCHHHHHHHHHHHHHEECCCCCCCCEECCHHHHHHHHHHHCCEEEEEECCCCHHH-HHHHHCCCHHHHHHHHHH---
T ss_conf 2255036788776530200102355572116379999999986793999952772777-777640187876335311---
Q ss_pred HCCCCCCCCCCCCHHHHH--HHHHHHHHHHCCCCCEEEEEECC-CCHHHHHHHCCCE-EEE-CCCHHHHHH
Q ss_conf 000000156310521138--87753233103776679999789-2348899848931-898-795789985
Q gi|254780960|r 204 DRLTGQVMEPIIDGTAKS--QILLEAIQKLQINPEDTIAVGDG-NNDLDMLRVAGYG-VAF-HAKPALAKQ 269 (297)
Q Consensus 204 ~~~~~~~~~~~~~~~~k~--~~~~~l~~~~~~~~~~v~avGDg-~ND~pmL~~AgvG-VA~-~a~~~v~~~ 269 (297)
..--+..|| +.-...+++++...++|+.+||. .||...=+.+|.- +-+ |.....++.
T Consensus 161 ---------S~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~~~~~~ 222 (237)
T KOG3085 161 ---------SCEVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSITALKEL 222 (237)
T ss_pred ---------HHHHCCCCCCHHHHHHHHHHHCCCHHHEEEECCCCCCCCHHHHHCCCEEEEECCCCCHHHHH
T ss_conf ---------43424678986899999988189968868846853212276897497799972565232433
No 112
>PRK10530 phosphotransferase; Provisional
Probab=96.64 E-value=0.008 Score=36.06 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=12.1
Q ss_pred CCEEEECCCEEEEECC
Q ss_conf 4448722750265245
Q gi|254780960|r 80 KNLLIADMDSTMIEQE 95 (297)
Q Consensus 80 ~~l~~~d~d~tli~~~ 95 (297)
.+++++|+||||...+
T Consensus 3 ~KlIa~DlDGTLl~~~ 18 (272)
T PRK10530 3 YRVIALDLDGTLLTPK 18 (272)
T ss_pred CCEEEEECCCCCCCCC
T ss_conf 5299990873635898
No 113
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=96.50 E-value=0.014 Score=34.55 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=66.3
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECC----CHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCC------CCCCHHHH
Q ss_conf 134543389999998419869998167----23422322655086413431010000000000156------31052113
Q gi|254780960|r 151 ITYNPGGYELVHTMKQNGASTLLVTGG----FSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVME------PIIDGTAK 220 (297)
Q Consensus 151 ~~~~~~~~~~i~~l~~~g~~v~iisg~----~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~------~~~~~~~k 220 (297)
..+.+++.+++..+++.|++++|+|.- ..++.+.--.. +.+..-..+......+.+.+.- ...-..-|
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~--~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~ 107 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDK--LHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPK 107 (181)
T ss_pred HCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHH--HHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 122745899999988679769999877775566766899998--999999999974970364998788987777666997
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE
Q ss_conf 8877532331037766799997892348899848931898
Q gi|254780960|r 221 SQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF 260 (297)
Q Consensus 221 ~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~ 260 (297)
+-.+.++++++++++...++|||...|+.+=..+|+. .+
T Consensus 108 ~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~-~~ 146 (181)
T COG0241 108 PGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK-GV 146 (181)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHCCCC-CE
T ss_conf 5899999998288822017840768878999977998-65
No 114
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.25 E-value=0.011 Score=35.28 Aligned_cols=65 Identities=25% Similarity=0.253 Sum_probs=51.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHC----CCEEEECCCHHHHHHCCEEEEC
Q ss_conf 0156310521138877532331037766799997892348899848----9318987957899858989956
Q gi|254780960|r 209 QVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVA----GYGVAFHAKPALAKQAKIRIDH 276 (297)
Q Consensus 209 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~A----gvGVA~~a~~~v~~~Ad~~~~~ 276 (297)
.+.+..+.+..|+.++..+..+.......++++||-..|..||+.. |++|.++.++ -.|.+.+..
T Consensus 164 ~V~Elrp~~~~KG~Av~~ll~~~~~~~~~pvfiGDD~TDEdaF~al~~~~g~~IkVG~~~---T~A~~rl~~ 232 (266)
T PRK10187 164 CVVEIKPRGTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA---TQASWRLAG 232 (266)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEECCCC---CCCEEECCC
T ss_conf 289847999984999999997478679943898788707899985121597799988889---877286889
No 115
>TIGR01485 SPP_plant-cyano sucrose phosphatase; InterPro: IPR012847 This entry describes the sucrose phosphate phosphohydrolase from plants and cyanobacteria (SPP). However, a closely related group of sequences from bacteria and archaea may prove to catalyze the same reaction. SPP is a member of the Class IIB subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain, which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain..
Probab=96.21 E-value=0.0047 Score=37.46 Aligned_cols=81 Identities=28% Similarity=0.484 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHCCCEEEEE-ECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 3389999998419869998-167234223226550864134310100000000001563105211388775323310377
Q gi|254780960|r 156 GGYELVHTMKQNGASTLLV-TGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQIN 234 (297)
Q Consensus 156 ~~~~~i~~l~~~g~~v~ii-sg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~ 234 (297)
-++.+-..|++.|+.|.+| |+ |.-....+.+..|.+++.=|.+++.+.
T Consensus 137 V~~~L~~~L~~~g~~vk~iYSs-------------------------------G~dlDilP~~s~KG~A~~YL~~kL~~~ 185 (257)
T TIGR01485 137 VIKQLEEELKKSGLDVKLIYSS-------------------------------GKDLDILPQGSGKGQALQYLLQKLKIE 185 (257)
T ss_pred HHHHHHHHHHHCCCCEEEEEEC-------------------------------CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9998998887428975899758-------------------------------823775027788567999999999843
Q ss_pred ---CCEEEEEECCCCHHHHHHH-CCCEEEE-CCCHHHH
Q ss_conf ---6679999789234889984-8931898-7957899
Q gi|254780960|r 235 ---PEDTIAVGDGNNDLDMLRV-AGYGVAF-HAKPALA 267 (297)
Q Consensus 235 ---~~~v~avGDg~ND~pmL~~-AgvGVA~-~a~~~v~ 267 (297)
.++|+..|||=||+..|.. --.||=+ ||.+.+-
T Consensus 186 GK~p~~TlVCGDSGNDi~LF~~~~~~GviV~NA~~ELL 223 (257)
T TIGR01485 186 GKQPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEELL 223 (257)
T ss_pred CCCCCCCEEECCCCCCHHHHCCCCCCEEEEECCCHHHH
T ss_conf 88977717858842347652179731488446714440
No 116
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs , all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family. .
Probab=96.18 E-value=0.017 Score=34.09 Aligned_cols=104 Identities=18% Similarity=0.300 Sum_probs=75.4
Q ss_pred CCCCCCCEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 55553444872275026524520027887412232778887652024410012345568764200456898874211345
Q gi|254780960|r 75 HENRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYN 154 (297)
Q Consensus 75 ~~~~~~~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (297)
...+..+-+++|.|.||+.. ....+.
T Consensus 29 lK~~~~KGvvlD~DnTl~~~------------------------------------------------------d~~~~~ 54 (196)
T TIGR01668 29 LKKKGIKGVVLDLDNTLVEP------------------------------------------------------DSREAA 54 (196)
T ss_pred EEECCCCEEEECCCCCCCCC------------------------------------------------------CCCCCC
T ss_conf 01048516896251130552------------------------------------------------------221036
Q ss_pred CCHHHHHHHHHHC--CCEEEEEECCC--------HHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHH---H
Q ss_conf 4338999999841--98699981672--------342232265508641343101000000000015631052113---8
Q gi|254780960|r 155 PGGYELVHTMKQN--GASTLLVTGGF--------SIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAK---S 221 (297)
Q Consensus 155 ~~~~~~i~~l~~~--g~~v~iisg~~--------~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k---~ 221 (297)
|..++.++.+|.. |.++.++|... ..-+..+.+.+||..+..- .++..+ .
T Consensus 55 P~l~~w~E~~k~~yPG~~l~ivSN~~~~~~yD~D~~r~k~~~~~lgI~~~~~a-----------------~Kp~~~Gdei 117 (196)
T TIGR01668 55 PELREWIEELKAAYPGLKLLIVSNNAGLLEYDKDESRVKALEKELGIPVLLHA-----------------VKPPGKGDEI 117 (196)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCC-----------------CCCCCCCHHH
T ss_conf 36678899998537995799987687654312014788888875188511477-----------------8878883378
Q ss_pred HHHHHHHHHHCCC-CCEEEEEECCC-CHHH
Q ss_conf 8775323310377-66799997892-3488
Q gi|254780960|r 222 QILLEAIQKLQIN-PEDTIAVGDGN-NDLD 249 (297)
Q Consensus 222 ~~~~~l~~~~~~~-~~~v~avGDg~-ND~p 249 (297)
-...+.....+.. .++|+||||.. .|+=
T Consensus 118 m~~~~A~~~~~l~s~~~~~vvGDrL~TDv~ 147 (196)
T TIGR01668 118 MAFRRALKEMGLTSSEQVVVVGDRLFTDVL 147 (196)
T ss_pred HHHHHHHHHCCCCCCCCEEEECCCCHHHHH
T ss_conf 999999875179873237887895146788
No 117
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain; InterPro: IPR006543 This is a group of authentic histidinol-phosphate phosphatases which are sometimes found as stand-alone entities and sometimes as fusions with imidazoleglycerol-phosphate dehydratase. Additionally, a family of proteins including YaeD from Escherichia coli and various other proteins are closely related but may not have the same substrate specificity. This protein is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing a conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the region modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.; GO: 0004401 histidinol-phosphatase activity, 0000105 histidine biosynthetic process.
Probab=96.17 E-value=0.029 Score=32.67 Aligned_cols=152 Identities=18% Similarity=0.268 Sum_probs=93.9
Q ss_pred CEEEECCCEEEEECCCCH-----HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 448722750265245200-----278874122327788876520244100123455687642004568988742113454
Q gi|254780960|r 81 NLLIADMDSTMIEQECID-----ELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNP 155 (297)
Q Consensus 81 ~l~~~d~d~tli~~~~l~-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (297)
+.+++|+|||++....-| ..++++|... |++-..+...+ ........+.|
T Consensus 1 ~~lflDRDGvin~~~~~drqaiidtarhfGvsv-----thedid~~~~~--------------------~~~~~~~~l~p 55 (208)
T TIGR01656 1 PALFLDRDGVINEDTDSDRQAIIDTARHFGVSV-----THEDIDHRKYY--------------------VRSLDDLQLEP 55 (208)
T ss_pred CEEEEECCCEEECCCCCHHHHHHHHHHHCCEEE-----EEECCCCCCCC--------------------CCCHHHCEECC
T ss_conf 937862485330247504678765343512035-----53035788788--------------------88865624061
Q ss_pred CHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCH---------HHHH-CCCC------HH--------HCCCCCCC
Q ss_conf 33899999984198699981672342232265508641---------3431-0100------00--------00000015
Q gi|254780960|r 156 GGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ---------YYAN-RFIE------KD--------DRLTGQVM 211 (297)
Q Consensus 156 ~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~---------~~a~-~~~~------~~--------~~~~~~~~ 211 (297)
++-.++..+++.|+.+++||.=|..+.+-|+...|... ...+ .+.. +. ..+..+-.
T Consensus 56 ~~~~a~~~l~~~g~~~~vVTNQfealy~GvGntrg~~~~~~~~~~~~~~~~l~l~~P~G~~~~~GrPrkdCa~~~CpH~~ 135 (208)
T TIGR01656 56 GAVDALLKLRAAGYTLVVVTNQFEALYSGVGNTRGYFSAEDFRAVNARLLELLLRQPLGVAVDGGRPRKDCAVFFCPHHD 135 (208)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEECCCH
T ss_conf 47999997640688689976422442000111304334789989889999887217897132288664431477304652
Q ss_pred -CC-----CCCH---HHHHHHHHHHHHHHC-CCCCEEEEEECC-CCHHHHHHHCCCE
Q ss_conf -63-----1052---113887753233103-776679999789-2348899848931
Q gi|254780960|r 212 -EP-----IIDG---TAKSQILLEAIQKLQ-INPEDTIAVGDG-NNDLDMLRVAGYG 257 (297)
Q Consensus 212 -~~-----~~~~---~~k~~~~~~l~~~~~-~~~~~v~avGDg-~ND~pmL~~AgvG 257 (297)
+. -.-. .-++.-+.+...+++ .+.....+|||. ..|+.+-+.+|.-
T Consensus 136 ~~~~P~~I~~c~CRPKP~Pgl~~~a~~~~~d~d~~~S~vVGD~d~~D~~~a~~~G~~ 192 (208)
T TIGR01656 136 ADNFPVAIWLCSCRPKPKPGLILEALKRLGDVDLSRSLVVGDRDLRDVQAARNAGLA 192 (208)
T ss_pred HCCCCEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCC
T ss_conf 037733201686212228526899996446655226157617856889999982555
No 118
>TIGR01548 HAD-SF-IA-hyp1 HAD superfamily (subfamily IA) hydrolase, TIGR01548; InterPro: IPR006438 This entry represents a small and phylogenetically curious clade of sequences. Sequences are found from Halobacterium (an archaeon), Nostoc and Synechococcus (cyanobacteria) and Phytophthora (a stramenophile eukaryote). These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs. The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicating membership in subfamily IA..
Probab=96.08 E-value=0.017 Score=33.99 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCH
Q ss_conf 0456898874211345433899999984-198699981672342232265508641343101000000000015631052
Q gi|254780960|r 139 STKIIDSLLEKKITYNPGGYELVHTMKQ-NGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDG 217 (297)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~-~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (297)
+..-..+++. +..+--.++..+.|.+ +++-+.++||-++.-+..+-++.||+..+-..+-.++ ...+
T Consensus 140 P~~a~~G~i~--dE~lL~~~~~l~~L~Rra~~~~~v~tGrp~~~a~~~L~~~Gl~i~~~v~i~m~D----------~p~G 207 (245)
T TIGR01548 140 PDLAADGYIE--DEDLLLAKDLLDELSRRADKAVAVLTGRPSKEADVVLERRGLDILGEVRIAMDD----------APDG 207 (245)
T ss_pred CCCCCCCCCC--CCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECC----------CCCC
T ss_conf 8634477400--222348654445643106875589728983789998763388877642677415----------7875
Q ss_pred HHHHHHHHHHHHHHCCCCC-EEEEEECCCCHHHHHHHC
Q ss_conf 1138877532331037766-799997892348899848
Q gi|254780960|r 218 TAKSQILLEAIQKLQINPE-DTIAVGDGNNDLDMLRVA 254 (297)
Q Consensus 218 ~~k~~~~~~l~~~~~~~~~-~v~avGDg~ND~pmL~~A 254 (297)
.-.|+.+..++++++.+.+ .++|+||.+.|+-.-+.|
T Consensus 208 KPnP~~li~aa~~lg~~~~l~a~~vGDTvdDi~t~r~A 245 (245)
T TIGR01548 208 KPNPEALILAAKRLGVDAHLSAVYVGDTVDDILTARKA 245 (245)
T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCC
T ss_conf 66747999999982746454257853878999974139
No 119
>PRK10513 sugar phosphatase; Provisional
Probab=95.89 E-value=0.022 Score=33.40 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=18.6
Q ss_pred HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 389999998419869998167234223226550864
Q gi|254780960|r 157 GYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFD 192 (297)
Q Consensus 157 ~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~ 192 (297)
..++++.+++.|+++++.||=+...+.++.+++++.
T Consensus 25 ~~~ai~~l~~~Gi~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 25 VKNAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCC
T ss_conf 999999999789999999799868789999983888
No 120
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=95.85 E-value=0.043 Score=31.60 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCH
Q ss_conf 45433899999984198699981672342232265508641
Q gi|254780960|r 153 YNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ 193 (297)
Q Consensus 153 ~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~ 193 (297)
+.+...++++.++..|+++++.||-+...+.++.++++++.
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCC
T ss_conf 89999999999997829899988998799999999729998
No 121
>TIGR01454 AHBA_synth_RP AHBA synthesis associated protein; InterPro: IPR006351 The enzymes in this family are all located in the operons for the biosynthesis of 3-amino-5-hydroxybenzoic acid (AHBA), which is a precursor of several antibiotics including ansatrienin , naphthomycin , rifamycin and mitomycin . The role that this enzyme plays in this biosynthesis has not been elucidated. It is a member of the haloacid dehalogenase superfamily (IPR005834 from INTERPRO) of aspartate-nucleophile hydrolases. This enzyme is closely related to phosphoglycolate phosphatase (IPR006346 from INTERPRO), but it is unclear what purpose a PGPase or PGPase-like activity would serve in these biosyntheses. The family is restricted to the Gram-positive actinobacteria. .
Probab=95.84 E-value=0.012 Score=34.94 Aligned_cols=101 Identities=26% Similarity=0.357 Sum_probs=82.8
Q ss_pred HHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 21134543389999998419869998167234223226550864134310100000000001563105211388775323
Q gi|254780960|r 149 KKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAI 228 (297)
Q Consensus 149 ~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~ 228 (297)
....+.+++.+++..++..|..+.+.+|....-++.+...+|+...+-.....++ .......++.++...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~g~~~~~~~~~~g~~~~~~~~~g~d~----------~~~p~p~pd~~~~~~ 141 (206)
T TIGR01454 72 GEVEVFPGVPELLADLRADGLGTAIATGKSGPRARSLLDALGLLPLFDHVIGSDE----------VPRPKPAPDIVRLAL 141 (206)
T ss_pred HHHHHCCCHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC----------CCCCCCCHHHHHHHH
T ss_conf 1121015537899987630110000105654146788876325677776614432----------367777257899887
Q ss_pred HHHCCCCCEEEEEECCCCHHHHHHHCCCEEE
Q ss_conf 3103776679999789234889984893189
Q gi|254780960|r 229 QKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259 (297)
Q Consensus 229 ~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA 259 (297)
..++...+..+++||...|+..-+.+|+.-.
T Consensus 142 ~~~~~~~~~~~~~gd~~~d~~~~~~~g~~~~ 172 (206)
T TIGR01454 142 GLLDVPPEDAVLVGDAPTDLASGRAAGTAAL 172 (206)
T ss_pred HHHCCCCHHHHHHCCHHHHHHHHHCCCCHHH
T ss_conf 6404660011000211333321100230122
No 122
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672; InterPro: IPR010025 This family of proteins is a member of the IIIB subfamily (IPR001001 from INTERPRO) of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of subfamily III and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs , all of which are found conserved in this family. AphA is a periplasmic acid phosphatase of Escherichia coli belonging to class B bacterial phosphatases , which is part of the DDDD superfamily of phosphohydrolases. The crystal structure of AphA has been determined at 2.2A and its resolution extended to 1.7A. Despite the lack of sequence homology, the AphA structure reveals a haloacid dehalogenase-like fold. This finding suggests that this fold could be conserved among members of the DDDD superfamily of phosphohydrolases. The active enzyme is a homotetramer built by using an extended N-terminal arm intertwining the four monomers. The active site of the native enzyme hosts a magnesium ion, which can be replaced by other metal ions. The structure explains the non-specific behaviour of AphA towards substrates, while a structure-based alignment with other phosphatases provides clues about the catalytic mechanism . ; GO: 0003993 acid phosphatase activity, 0030288 outer membrane-bounded periplasmic space.
Probab=95.61 E-value=0.038 Score=31.92 Aligned_cols=172 Identities=17% Similarity=0.136 Sum_probs=82.2
Q ss_pred HHHHHCCCCEEE-----CCCCCCCCCEEEECCCEE-EEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 840216863462-----145555344487227502-65245200278874122327788876520244100123455687
Q gi|254780960|r 61 SIIADKPIDLII-----HRHENRRKNLLIADMDST-MIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISL 134 (297)
Q Consensus 61 ~~~~~~~~d~~~-----~~~~~~~~~l~~~d~d~t-li~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (297)
++..+.++..+- .+..++.+-.|.||.|-| +.-... .. +.|...- -.+.- +++....-
T Consensus 40 ~~~~qa~i~wiSvaqI~~SLeG~~Pi~VsFDIDDTv~LFsSp-~F---~~Gk~~f--------sPgs~---DyLknq~F- 103 (248)
T TIGR01672 40 RLAEQAAIHWISVAQIESSLEGKKPIAVSFDIDDTVLLFSSP-GF---YRGKKKF--------SPGSE---DYLKNQKF- 103 (248)
T ss_pred HHHHHCCEEEEEHHHHHHHHCCCCCCEEECCCCCEEEEECCC-CC---CCCCEEC--------CCCCC---CCCCCHHH-
T ss_conf 897509825875878886651798823435513303231264-20---0573012--------88842---22468136-
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHH-HCCCCCCCCC
Q ss_conf 642004568988742113454338999999841986999816723422322655086413431010000-0000001563
Q gi|254780960|r 135 FKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKD-DRLTGQVMEP 213 (297)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~-~~~~~~~~~~ 213 (297)
+ +.+..++ -..-.+.+-++++|+-|+++|.++++|||=-+-..-.-.+--+.....+..+.++. +..... +
T Consensus 104 W----~~vn~g~-D~~SIPKe~A~qLI~MH~~RGD~i~F~TGRt~gsmykkGk~d~v~k~Lak~F~i~~tnm~pv~---f 175 (248)
T TIGR01672 104 W----EKVNKGG-DKYSIPKEVAKQLIDMHQKRGDKIFFVTGRTAGSMYKKGKVDKVAKILAKDFKIDKTNMNPVE---F 175 (248)
T ss_pred H----HHHHCCC-CCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEE---E
T ss_conf 8----9986578-877775789999999887609879998468764433256214333003530687667886335---3
Q ss_pred CCCHHHHH--HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCC-EEEE
Q ss_conf 10521138--87753233103776679999789234889984893-1898
Q gi|254780960|r 214 IIDGTAKS--QILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGY-GVAF 260 (297)
Q Consensus 214 ~~~~~~k~--~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~Agv-GVA~ 260 (297)
.-++..+| ..+-..+...+ .-+.+|||-||+-|=|.||+ ||=+
T Consensus 176 ~Gdk~~~P~~y~Kt~~i~~~~----~~IhYGDSD~Di~AAkeaGaRgIRi 221 (248)
T TIGR01672 176 AGDKERKPYKYDKTQYIKDKK----VRIHYGDSDDDILAAKEAGARGIRI 221 (248)
T ss_pred ECCCCCCCCCCCCCHHHHHCC----CEEEECCCHHHHHHHHHCCCCCEEE
T ss_conf 178888885434308987588----6488758856889998678885224
No 123
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=95.52 E-value=0.018 Score=33.92 Aligned_cols=93 Identities=22% Similarity=0.227 Sum_probs=56.0
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHH----HHHHH
Q ss_conf 13454338999999841986999816723422322655086413431010000000000156310521138----87753
Q gi|254780960|r 151 ITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKS----QILLE 226 (297)
Q Consensus 151 ~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~----~~~~~ 226 (297)
..+.+-+++++.-++++|..++++||-.+--++.+.+.|.-++-+.|.- ++.+...|+ ..+-.
T Consensus 113 SIPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~nm~-------------pv~f~Gdk~k~~qy~Kt~ 179 (237)
T COG3700 113 SIPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMN-------------PVIFAGDKPKPGQYTKTQ 179 (237)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCC-------------CEEECCCCCCCCCCCCCH
T ss_conf 4659999999999985388489993677875432116678534658875-------------424316888756555338
Q ss_pred HHHHHCCCCCEEEEEECCCCHHHHHHHCCC-EEEE
Q ss_conf 233103776679999789234889984893-1898
Q gi|254780960|r 227 AIQKLQINPEDTIAVGDGNNDLDMLRVAGY-GVAF 260 (297)
Q Consensus 227 l~~~~~~~~~~v~avGDg~ND~pmL~~Agv-GVA~ 260 (297)
.+... .--+.+||+.||+-+-+.||+ ||-.
T Consensus 180 ~i~~~----~~~IhYGDSD~Di~AAkeaG~RgIRi 210 (237)
T COG3700 180 WIQDK----NIRIHYGDSDNDITAAKEAGARGIRI 210 (237)
T ss_pred HHHHC----CCEEEECCCCHHHHHHHHCCCCCEEE
T ss_conf 77746----82587168710566777628653367
No 124
>pfam09419 DUF2010 Protein of unknown function. This is a family of proteins which show sequence similarity to the HAD superfamily of hydrolases.
Probab=95.33 E-value=0.032 Score=32.35 Aligned_cols=79 Identities=16% Similarity=0.092 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHC--CCEEEEEECC-------CHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHH
Q ss_conf 13454338999999841--9869998167-------23422322655086413431010000000000156310521138
Q gi|254780960|r 151 ITYNPGGYELVHTMKQN--GASTLLVTGG-------FSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKS 221 (297)
Q Consensus 151 ~~~~~~~~~~i~~l~~~--g~~v~iisg~-------~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~ 221 (297)
..+.|...+.++.|++. |.++.++|.. ...-++++++.+|+....... -++.+..
T Consensus 56 ~~~~~~~~~~~~~lk~~~~g~~v~IvSNnags~~~~~~~~~~~~~~~lgipv~~h~~----------------kKP~~~~ 119 (166)
T pfam09419 56 DKIWPPYQEKWERLRSVYPGKRLLIVSNSAGSSDDPDGEQAEALEKSTGIPVLRHPV----------------KKPGCGE 119 (166)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCC----------------CCCCCHH
T ss_conf 868989999999999863997699995896666670089999999864995786268----------------7998869
Q ss_pred HHHHHHH-HHHCCCCCEEEEEECCC
Q ss_conf 8775323-31037766799997892
Q gi|254780960|r 222 QILLEAI-QKLQINPEDTIAVGDGN 245 (297)
Q Consensus 222 ~~~~~l~-~~~~~~~~~v~avGDg~ 245 (297)
+.++.+. .....+.++|+||||=.
T Consensus 120 ~~~~~f~~~~~~~~p~evavVGDql 144 (166)
T pfam09419 120 EILEYFKERGVVTRPSEIAVVGDRL 144 (166)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCHH
T ss_conf 9999998712689930299988547
No 125
>pfam11019 DUF2608 Protein of unknown function (DUF2608). This family is conserved in Bacteria. The function is not known.
Probab=95.21 E-value=0.22 Score=27.31 Aligned_cols=110 Identities=19% Similarity=0.222 Sum_probs=73.0
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH---HHCCCHHHHHCCCCH-----------HHCCCCCCCC-CC
Q ss_conf 11345433899999984198699981672342232265---508641343101000-----------0000000156-31
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQ---HLGFDQYYANRFIEK-----------DDRLTGQVME-PI 214 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~---~lgi~~~~a~~~~~~-----------~~~~~~~~~~-~~ 214 (297)
...+-+.+...+..++..++.+.-+|..++.......+ ++|++.--.. ++.+ .....-...| ..
T Consensus 78 ~~lie~~~~~~i~~l~~~~~~v~glT~~~~~~~~~t~~~Lk~l~i~Fs~~a-~~~~~~~~~~~~~~~~~~~~~~~~GIlf 156 (251)
T pfam11019 78 MELIESDVPSLINKLQNKGITVLGLTERPPNMESWTLRELKRLGIDFSSSS-FPEDGFIKFPVTDSALSRAPVFYKGILF 156 (251)
T ss_pred EEEECHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEECEEE
T ss_conf 487157389999999978993999838981069999999998795655577-8766641154456777888735616688
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHC--CCEEEE
Q ss_conf 0521138877532331037766799997892348899848--931898
Q gi|254780960|r 215 IDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVA--GYGVAF 260 (297)
Q Consensus 215 ~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~A--gvGVA~ 260 (297)
..+..|++.+..+..+.+...+.++++.|....+..+..+ +.+|.|
T Consensus 157 t~~~~Kg~~L~~fL~~~~~~P~~IIfIDd~~enl~s~~~~ck~~~I~f 204 (251)
T pfam11019 157 TGGLNKGEMLKYFLDKTNQSPKKIIFVDDNKENLESMGEACKKANILF 204 (251)
T ss_pred ECCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCE
T ss_conf 479643899999999707688659997598899999999996589947
No 126
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=95.21 E-value=0.035 Score=32.16 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=29.1
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCCCEECCCCEE
Q ss_conf 998458887689999999998607888357318804
Q gi|254780960|r 6 TLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIA 41 (297)
Q Consensus 6 TLi~~~~~~~l~~~~~~~i~~~~~~~~~~~La~~~A 41 (297)
||+.+.. .+++.+..+++...+.|....+|+||.
T Consensus 13 TLl~~~~--~i~~~~~~ai~~l~~~Gi~v~iaTGR~ 46 (226)
T PRK01158 13 TITDPDR--RLHLKAVEAIRKAEKLGVPVILVTGNI 46 (226)
T ss_pred CCCCCCC--CCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 7646919--719999999999998899899989997
No 127
>PRK10444 UMP phosphatase; Provisional
Probab=95.09 E-value=0.066 Score=30.44 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHCCCEEEE--CC--C-HHHHHH---CCEEEEC
Q ss_conf 05211388775323310377667999978923-48899848931898--79--5-789985---8989956
Q gi|254780960|r 215 IDGTAKSQILLEAIQKLQINPEDTIAVGDGNN-DLDMLRVAGYGVAF--HA--K-PALAKQ---AKIRIDH 276 (297)
Q Consensus 215 ~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~N-D~pmL~~AgvGVA~--~a--~-~~v~~~---Ad~~~~~ 276 (297)
+.+.-.+......+.+++...++++||||... |+.+=+.+|+-=.+ -+ + +.+++. -|+++++
T Consensus 171 ~~GKP~~~~~~~al~~l~~~~~~~vmIGD~l~TDI~~a~~~G~~siLVlTG~t~~~~~~~~~~~Pd~v~~s 241 (248)
T PRK10444 171 YVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPS 241 (248)
T ss_pred ECCCCCHHHHHHHHHHHCCCHHHEEEECCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCEEECC
T ss_conf 72798799999999981988100799878805679999987998899845999989997379999999898
No 128
>KOG3128 consensus
Probab=94.94 E-value=0.035 Score=32.12 Aligned_cols=168 Identities=16% Similarity=0.219 Sum_probs=96.2
Q ss_pred HHHHCCCCC-HHHHHHHHHHHH--HHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCC
Q ss_conf 652024410-012345568764--2004568988-742113454338999999841986999816723422322655086
Q gi|254780960|r 116 RAMNGEIPF-QDSLRERISLFK--GTSTKIIDSL-LEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGF 191 (297)
Q Consensus 116 ~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi 191 (297)
..+....++ .+.|.+...++- +.+....... ......+|++..+.+..|+++++.+.+.|.+.-...+.+-++.+.
T Consensus 98 ltieEKvp~MeeWW~kSH~Lliq~~f~k~~I~~~Va~s~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~ 177 (298)
T KOG3128 98 LTIEEKVPHMEEWWTKSHELLIQGGFSKNAIDDIVAESNIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLV 177 (298)
T ss_pred CCHHHHCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHC
T ss_conf 77665033899998306554345885778999999970499998799999999847986588733107899999998721
Q ss_pred ----CHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHH-HHHHHHHH--CCCCCEEEEEECCCCHHHHHHHC-CC----EEE
Q ss_conf ----41343101000000000015631052113887-75323310--37766799997892348899848-93----189
Q gi|254780960|r 192 ----DQYYANRFIEKDDRLTGQVMEPIIDGTAKSQI-LLEAIQKL--QINPEDTIAVGDGNNDLDMLRVA-GY----GVA 259 (297)
Q Consensus 192 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~~l~~~~--~~~~~~v~avGDg~ND~pmL~~A-gv----GVA 259 (297)
....+|...+....+......+....-.|-.. ++.-+.++ .....+|+.-||+..|+.|=.-+ ++ -|.
T Consensus 178 ~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~~~~s~yf~~~~~~~nVillGdsigdl~ma~gv~~~~~iLkig 257 (298)
T KOG3128 178 LHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVLQNESEYFHQLAGRVNVILLGDSIGDLHMADGVPRVGHILKIG 257 (298)
T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCCCEEEE
T ss_conf 27417765115543321003210278998870631887766678852168816999545213121302875556523541
Q ss_pred E-C-----CCHHHHHHCCEEEECCCHHHHH
Q ss_conf 8-7-----9578998589899569832767
Q gi|254780960|r 260 F-H-----AKPALAKQAKIRIDHSDLEALL 283 (297)
Q Consensus 260 ~-~-----a~~~v~~~Ad~~~~~~dl~~~l 283 (297)
| | +.....+.=|+++.+..+-+|.
T Consensus 258 ~l~d~vee~~~~ymd~ydIvL~~D~tldv~ 287 (298)
T KOG3128 258 YLNDSVEEALEKYMDSYDIVLVHDETLDVA 287 (298)
T ss_pred CCCCHHHHHHHHHHHHCCEEEECCCCCCHH
T ss_conf 023458999998776606588528531066
No 129
>TIGR01663 PNK-3'Pase polynucleotide kinase 3'-phosphatase; InterPro: IPR006550 These sequences represent the metazoan 5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is believed to be involved in repair of oxidative DNA damage. Removal of 3'-phosphates is essential for the further processing of the break by DNA polymerases , . The central phosphatase domain is a member of the IIIA subfamily (IPR006549 from INTERPRO) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is replaced by a conserved arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Very close relatives of this domain are also found separate from the N- and C-terminal domains seen here, as in the 3'-phosphatase found in plants. The larger family of these domains is described by IPR006551 from INTERPRO. Outside of the phosphatase domain is a P-loop ATP-binding motif associated with the kinase activity. The entry for the mouse homolog appears to be missing a large piece of sequence corresponding to the first conserved catalytic motif of the phosphatase domain as well as the conserved threonine of the second motif. Either this is a sequencing artifact or this may represent a pseudo- or non-functional gene. .
Probab=94.91 E-value=0.061 Score=30.66 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=64.5
Q ss_pred CCCCCCCEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 55553444872275026524520027887412232778887652024410012345568764200456898874211345
Q gi|254780960|r 75 HENRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYN 154 (297)
Q Consensus 75 ~~~~~~~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (297)
.-...-++..||||||||..++=-. | ... -...-.+.
T Consensus 163 GVK~~~K~AGyDlDGT~I~T~SG~V------------------------F------------P~~-------~~DW~I~y 199 (526)
T TIGR01663 163 GVKGSEKVAGYDLDGTLIKTKSGKV------------------------F------------PKN-------TDDWRILY 199 (526)
T ss_pred CCCCCCCEEEEECCCCEEECCCCEE------------------------C------------CCC-------CCCCEEEC
T ss_conf 2257873442425773673134302------------------------0------------688-------88657845
Q ss_pred CCHHHHHHHHHHCCCEEEEEEC------------CCHHHHHHHHHHHCCCH--HHHHCCCCHHHCCCCCCCCCCCCHHHH
Q ss_conf 4338999999841986999816------------72342232265508641--343101000000000015631052113
Q gi|254780960|r 155 PGGYELVHTMKQNGASTLLVTG------------GFSIFARFIAQHLGFDQ--YYANRFIEKDDRLTGQVMEPIIDGTAK 220 (297)
Q Consensus 155 ~~~~~~i~~l~~~g~~v~iisg------------~~~~~~~~ia~~lgi~~--~~a~~~~~~~~~~~~~~~~~~~~~~~k 220 (297)
|++.+-++.|++.|++++|.|. +|..-+++|-+.||+.. .+|...-+.-.-.||.+
T Consensus 200 PE~P~KL~~L~~~GyK~~~FTNQ~~I~RGK~~~~~FK~K~~~~V~KLGVP~QVl~A~~~GlYRKP~TGMW---------- 269 (526)
T TIGR01663 200 PEVPRKLKELEKDGYKLVLFTNQGSIARGKLNLDDFKVKVKAVVEKLGVPIQVLVAIGDGLYRKPLTGMW---------- 269 (526)
T ss_pred CCCCHHHHHHHHCCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHH----------
T ss_conf 6544578887418827999845773001555656766688888986189768876506872027752047----------
Q ss_pred HHHHHH-HHHHHCCCCCEEEEEECCC
Q ss_conf 887753-2331037766799997892
Q gi|254780960|r 221 SQILLE-AIQKLQINPEDTIAVGDGN 245 (297)
Q Consensus 221 ~~~~~~-l~~~~~~~~~~v~avGDg~ 245 (297)
++++. .-.--.|+.+++++|||.+
T Consensus 270 -~HL~~~~NDG~~I~~~~~~FVGDAA 294 (526)
T TIGR01663 270 -DHLKEEANDGVEISIDDSIFVGDAA 294 (526)
T ss_pred -HHHHHHCCCCCEEECCCEEEECCCC
T ss_conf -8988753688123117757871667
No 130
>PRK10976 putative sugar phosphatase; Provisional
Probab=94.91 E-value=0.047 Score=31.36 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=17.2
Q ss_pred HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 389999998419869998167234223226550864
Q gi|254780960|r 157 GYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFD 192 (297)
Q Consensus 157 ~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~ 192 (297)
.+++++.+++.|+++++.||=+...+.++.+.++++
T Consensus 24 ~~~ai~~l~~~Gi~~viATGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 24 AKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 999999999789999999799979999999973997
No 131
>TIGR01545 YfhB_g-proteo HAD superfamily (subfamily IF) hydrolase, YfhB; InterPro: IPR006435 This group describes a clade of sequences limited to the gamma proteobacteria. This group is a member of the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases and all of the conserved catalytic motifs are present . Although structurally similar to subfamily IA in that the variable domain is predicted to consist of five consecutive alpha helices (by PSI-PRED), it is sufficiently divergent to warrant being regarded as a separate sub-family (IF)..
Probab=94.86 E-value=0.15 Score=28.26 Aligned_cols=176 Identities=13% Similarity=0.102 Sum_probs=97.2
Q ss_pred CCCCEEEECCCEEEEECCCCHHHHHHH------------------HCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 534448722750265245200278874------------------12232778887652024410012345568764200
Q gi|254780960|r 78 RRKNLLIADMDSTMIEQECIDELADLI------------------GIKEKVSLITARAMNGEIPFQDSLRERISLFKGTS 139 (297)
Q Consensus 78 ~~~~l~~~d~d~tli~~~~l~~~a~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (297)
..++++.||+|||+-.++..-...++. ++...+..-..++.-.-+-|.-.+.++-+.+....
T Consensus 3 ~~~r~~ffdldGtlhqqdmfGsflr~llr~~Pln~llv~PllP~i~~~ll~~Gr~arWPmslllW~~tfG~~ea~l~~l~ 82 (210)
T TIGR01545 3 GEKRVVFFDLDGTLHQQDMFGSFLRYLLRRLPLNLLLVLPLLPLIAVALLVKGRAARWPMSLLLWAMTFGRREARLRDLE 82 (210)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 87347998358621146667899999987340778889866889998888435311002889998643051156888889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCC-CCHH
Q ss_conf 456898874211345433899999984198699981672342232265508641343101000000000015631-0521
Q gi|254780960|r 140 TKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPI-IDGT 218 (297)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 218 (297)
...........-.+.--...+-+.+......+.+|||.+...++.+-..-.+- .....-.....-.+.+-. ....
T Consensus 83 ~~fv~~fr~~vt~fP~v~~rl~~yl~ssda~~WlitGsPq~lve~vy~d~~~~----~r~~li~s~~~r~~GGWvl~~rC 158 (210)
T TIGR01545 83 ADFVAAFRDKVTEFPLVAERLRTYLLSSDAEVWLITGSPQRLVEAVYFDSNFL----HRLRLIASRIERRYGGWVLTLRC 158 (210)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCHHH----HHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 99999998732016278999999862057736897468678888775042157----78888876542046863787652
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCE
Q ss_conf 138877532331037766799997892348899848931
Q gi|254780960|r 219 AKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG 257 (297)
Q Consensus 219 ~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvG 257 (297)
-..+.+..+-.+++.+.+----+.|+..|-|.|..+..-
T Consensus 159 lG~ekv~qle~~~G~Pl~lysGysds~qdnPll~fC~hr 197 (210)
T TIGR01545 159 LGHEKVVQLERKLGSPLKLYSGYSDSKQDNPLLAFCEHR 197 (210)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHCCC
T ss_conf 465889999876088501201444343364365542000
No 132
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=94.59 E-value=0.15 Score=28.26 Aligned_cols=89 Identities=21% Similarity=0.306 Sum_probs=55.4
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHH----HHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHH--HHH
Q ss_conf 134543389999998419869998167234223226----55086413431010000000000156310521138--877
Q gi|254780960|r 151 ITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIA----QHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKS--QIL 224 (297)
Q Consensus 151 ~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia----~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~--~~~ 224 (297)
..+.+.++++++-+.++|.++++|||-...-.+.+. +..+|++ ..++++...|+ ..+
T Consensus 113 SiPK~~a~~LI~MH~~RGD~IyFITGRt~~~~e~~t~~L~~~F~i~~-----------------m~pVifagdkp~~~~K 175 (235)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTQTKTETVSKTLAKNFHIDN-----------------MNPVIFAGDKPGQNTK 175 (235)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCC-----------------CCCEEEECCCCCCCCH
T ss_conf 67179999999999972995999958888875148899998718687-----------------7643774788776515
Q ss_pred HHHHHHHCCCCCEEEEEECCCCHHHHHHHCCC-EEEE
Q ss_conf 53233103776679999789234889984893-1898
Q gi|254780960|r 225 LEAIQKLQINPEDTIAVGDGNNDLDMLRVAGY-GVAF 260 (297)
Q Consensus 225 ~~l~~~~~~~~~~v~avGDg~ND~pmL~~Agv-GVA~ 260 (297)
..+.+..+ .-+.+||+.||+-+-+.||+ ||-+
T Consensus 176 t~~ik~~~----i~i~YGDsD~DI~aA~eaGargIRv 208 (235)
T PRK11009 176 TQWLKDKN----IRIFYGDSDNDITAAREAGARGIRI 208 (235)
T ss_pred HHHHHHCC----CEEEECCCCHHHHHHHHCCCCEEEE
T ss_conf 48998669----1498358703589998749753788
No 133
>pfam05116 S6PP Sucrose-6F-phosphate phosphohydrolase. This family consists of Sucrose-6F-phosphate phosphohydrolase proteins found in plants and cyanobacteria. Sucrose-6(F)-phosphate phosphohydrolase catalyses the final step in the pathway of sucrose biosynthesis.
Probab=94.52 E-value=0.075 Score=30.14 Aligned_cols=34 Identities=12% Similarity=0.027 Sum_probs=28.4
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCCCEECCCCEE
Q ss_conf 998458887689999999998607888357318804
Q gi|254780960|r 6 TLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIA 41 (297)
Q Consensus 6 TLi~~~~~~~l~~~~~~~i~~~~~~~~~~~La~~~A 41 (297)
||+.++. .+++.+..+++.....|....+|+||.
T Consensus 12 TLL~~~~--~i~~~~~~al~~l~~~Gi~vviaTGR~ 45 (247)
T pfam05116 12 TLVDGDN--EALARLNQLLEAQYRPDSLLVFATGRS 45 (247)
T ss_pred CCCCCCC--CCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 7809349--588999999999995898899988999
No 134
>TIGR01261 hisB_Nterm histidinol-phosphatase; InterPro: IPR005954 This entry describes a histidinol phosphatase domain. This domain occurs in bifunctional proteins at the N-terminal region, followed by an imidazoleglycerol-phosphate dehydratase domain (IPR000807 from INTERPRO). These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis. ; GO: 0004401 histidinol-phosphatase activity, 0004424 imidazoleglycerol-phosphate dehydratase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm.
Probab=94.51 E-value=0.048 Score=31.32 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=62.1
Q ss_pred HHCCCCCCHHHHHHHHHHCCCEEEEEEC-------CCHHHHHHHHH--HHCCCHHHHHCC-CCHHHCCCCCCCC-CCCCH
Q ss_conf 2113454338999999841986999816-------72342232265--508641343101-0000000000156-31052
Q gi|254780960|r 149 KKITYNPGGYELVHTMKQNGASTLLVTG-------GFSIFARFIAQ--HLGFDQYYANRF-IEKDDRLTGQVME-PIIDG 217 (297)
Q Consensus 149 ~~~~~~~~~~~~i~~l~~~g~~v~iisg-------~~~~~~~~ia~--~lgi~~~~a~~~-~~~~~~~~~~~~~-~~~~~ 217 (297)
.+..+.+++...+..|++.|++.+|||. +|+..--..+. ++.| +.+.. .+++--.-.+... ...-.
T Consensus 26 eKL~f~~~vIp~LlkL~~~GYkfVmvtNQDGLGt~sFP~~~Fd~pH~~Ml~i---F~S~Gi~F~dvLICPH~~~dnC~CR 102 (165)
T TIGR01261 26 EKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQEDFDGPHNLMLQI---FRSQGIIFDDVLICPHFPDDNCDCR 102 (165)
T ss_pred HHHHCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH---HCCCCEEEEEEEECCCCCCCCCCCC
T ss_conf 6521155414347888756975889854477888655646742234899998---5049843224631498876677888
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCC
Q ss_conf 11388775323310377667999978923488998489
Q gi|254780960|r 218 TAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAG 255 (297)
Q Consensus 218 ~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~Ag 255 (297)
.-|..-+..+.++..++.++.++|||=..|+..=+.=+
T Consensus 103 KPkikLl~~Yl~~~~~D~~~SyVIGDR~TD~qLA~NL~ 140 (165)
T TIGR01261 103 KPKIKLLEPYLKKNKIDKARSYVIGDRETDMQLAENLG 140 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHCC
T ss_conf 88525678886453100461852436777999986258
No 135
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.48 E-value=0.075 Score=30.11 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=33.3
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECC
Q ss_conf 998458887689999999998607888357318804999826888948999999984021686346214
Q gi|254780960|r 6 TLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSIIADKPIDLIIHR 74 (297)
Q Consensus 6 TLi~~~~~~~l~~~~~~~i~~~~~~~~~~~La~~~A~e~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~ 74 (297)
||+.+ +. .+++ +..+++.+.+.|....+|+||.. ..+.....+.+++..+..
T Consensus 16 TLL~~-~~-~~~~-~~~ai~~l~~~Gi~vviaTGR~~--------------~~~~~~~~~l~l~~~~I~ 67 (275)
T PRK00192 16 TLLDH-TY-DWEP-AKPTLKALKEKGIPVIPCTSKTA--------------AEVEVLRAELGLEDPFIV 67 (275)
T ss_pred CCCCC-CC-CCCH-HHHHHHHHHHCCCEEEEECCCCH--------------HHHHHHHHHHCCCCEEEE
T ss_conf 78489-99-8368-99999999978999999689889--------------999999999589974999
No 136
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.41 E-value=0.035 Score=32.18 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHCC-CC-CEEEEEECCCCHHHHHHHCCCEEEEC
Q ss_conf 38877532331037-76-67999978923488998489318987
Q gi|254780960|r 220 KSQILLEAIQKLQI-NP-EDTIAVGDGNNDLDMLRVAGYGVAFH 261 (297)
Q Consensus 220 k~~~~~~l~~~~~~-~~-~~v~avGDg~ND~pmL~~AgvGVA~~ 261 (297)
|.++.+-+.+.+.. .. +.++.+|||.||+|||...|..+-++
T Consensus 192 Kg~Aa~~ll~~y~rl~~~r~t~~~GDg~nD~Pl~ev~d~AfiV~ 235 (274)
T COG3769 192 KGQAANWLLETYRRLGGARTTLGLGDGPNDAPLLEVMDYAFIVK 235 (274)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHEEEC
T ss_conf 44779999999985376058885178877651787633330323
No 137
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=93.90 E-value=0.44 Score=25.41 Aligned_cols=107 Identities=19% Similarity=0.049 Sum_probs=60.2
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHH-------CCCCC-CCCCCC--CHHH
Q ss_conf 1134543389999998419869998167234223226550864134310100000-------00000-156310--5211
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDD-------RLTGQ-VMEPII--DGTA 219 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~-------~~~~~-~~~~~~--~~~~ 219 (297)
+|+..+++.+++..+++.|+++.-+|+=+...+....+-|. ....+......+ .+... ..+.+. ...-
T Consensus 25 ~Dwth~Gva~l~~~i~~nGY~ilYLTaRpi~qa~~Tr~~L~--~~~Q~g~~LP~Gpv~~sp~~~~~al~rEvi~~~pe~F 102 (157)
T smart00775 25 KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLS--QIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVF 102 (157)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--HHHHCCCCCCCCCEEECCCCHHHHHHHHHHHCCHHHH
T ss_conf 55212109999999997894699981543667999999999--7350776389987787673058763567740686999
Q ss_pred HHHHHHHHHHHHCCCC-CEEEEEECCCCHHHHHHHCCCEE
Q ss_conf 3887753233103776-67999978923488998489318
Q gi|254780960|r 220 KSQILLEAIQKLQINP-EDTIAVGDGNNDLDMLRVAGYGV 258 (297)
Q Consensus 220 k~~~~~~l~~~~~~~~-~~v~avGDg~ND~pmL~~AgvGV 258 (297)
|-..++.+..-+.... --.+.+|.-.||+.+-+.+|+-.
T Consensus 103 Ki~~L~di~~lf~~~~~pfyagFGNr~tD~~aY~~vGip~ 142 (157)
T smart00775 103 KIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPP 142 (157)
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCCH
T ss_conf 9999999998648888952676078562799999769995
No 138
>pfam03767 Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase). This family proteins includes acid phosphatases and a number of vegetative storage proteins.
Probab=93.01 E-value=0.62 Score=24.51 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=48.4
Q ss_pred HHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH---HHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 4211345433899999984198699981672342232265---5086413431010000000000156310521138877
Q gi|254780960|r 148 EKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQ---HLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQIL 224 (297)
Q Consensus 148 ~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~---~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 224 (297)
....+..|++.++.+.++..|+++.+|||=....-..-.+ ..|+..+-.-.+...+. .+ .....-|-..-
T Consensus 116 ~~~apaipg~l~l~~~~~~~Gvkif~lT~R~e~~r~~T~~NL~~~G~~~w~~Lilr~~~~------~~-~~~~~yKs~~R 188 (230)
T pfam03767 116 KGEAPALPGALELYNYLVELGVKIFFVSGRSEDLRAATVENLKKAGFHGWEKLILRGKKD------SN-KSATSYKSERR 188 (230)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCC------CC-CCCCCCCHHHH
T ss_conf 176867735999999999779279997287378889879999975999845663668654------68-85400008999
Q ss_pred HHHHHHHCCCCCEEEEEECCCCHHH
Q ss_conf 5323310377667999978923488
Q gi|254780960|r 225 LEAIQKLQINPEDTIAVGDGNNDLD 249 (297)
Q Consensus 225 ~~l~~~~~~~~~~v~avGDg~ND~p 249 (297)
+.+.+. ....+..+||..+|+.
T Consensus 189 ~~l~~~---GYrIvg~iGDQwsDl~ 210 (230)
T pfam03767 189 KKLVKK---GYNIVGNIGDQWSDFL 210 (230)
T ss_pred HHHHHC---CCEEEEEECCCHHHHC
T ss_conf 999976---9879998678888726
No 139
>pfam08645 PNK3P Polynucleotide kinase 3 phosphatase. Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin.
Probab=92.29 E-value=0.35 Score=26.00 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCHH----------HHHH---HHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHH
Q ss_conf 34543389999998419869998167234----------2232---2655086413431010000000000156310521
Q gi|254780960|r 152 TYNPGGYELVHTMKQNGASTLLVTGGFSI----------FARF---IAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGT 218 (297)
Q Consensus 152 ~~~~~~~~~i~~l~~~g~~v~iisg~~~~----------~~~~---ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (297)
.+.|++.+.++.|++.|+++++||.=.-. +... +.+.+++.-.+ ..-..-...
T Consensus 29 ~~~p~V~~~L~~L~~~gY~iVIvTNQ~Gi~~~~~~~~~~~~~ki~~~~~~~~~~~~~--------------~~~~~~d~~ 94 (158)
T pfam08645 29 WLYPSVPEKLKKLHEDGYKIVIFTNQGGIGTKGKKSAESFKNKIEAILKKLDVPLQV--------------YAATKKDKY 94 (158)
T ss_pred ECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE--------------EEECCCCCC
T ss_conf 807788999999998898799994775335577347999999999999986997899--------------994487656
Q ss_pred HHHHH--HHHHHHHHC----CCCCEEEEEECCCC
Q ss_conf 13887--753233103----77667999978923
Q gi|254780960|r 219 AKSQI--LLEAIQKLQ----INPEDTIAVGDGNN 246 (297)
Q Consensus 219 ~k~~~--~~~l~~~~~----~~~~~v~avGDg~N 246 (297)
.||.. ...+.+.++ ++.+++.||||.++
T Consensus 95 RKP~~GM~~~~~~~~~~~~~iD~~~Sf~vGDaag 128 (158)
T pfam08645 95 RKPNTGMWDELLEDYNDGITIDLEKSFYVGDAAG 128 (158)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCC
T ss_conf 7997369999999725675446530189843668
No 140
>TIGR01684 viral_ppase viral phosphatase; InterPro: IPR007827 This family contains uncharacterised baculoviral proteins..
Probab=92.22 E-value=0.27 Score=26.76 Aligned_cols=136 Identities=16% Similarity=0.158 Sum_probs=62.5
Q ss_pred CCCCCCEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 55534448722750265245200278874122327788876520244100123455687642004568988742113454
Q gi|254780960|r 76 ENRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNP 155 (297)
Q Consensus 76 ~~~~~~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (297)
.-..+.+++||||+|||.++.--.+.+ ..+ ...+.-++.... ..-++...+. .
T Consensus 136 ~~e~PHV~VFDlDsTLITd~~~V~iRD-----~~i------------------Y~~L~eLk~~gc--~L~LWSYGdr--~ 188 (323)
T TIGR01684 136 VFEPPHVVVFDLDSTLITDEEEVRIRD-----PRI------------------YDSLEELKKRGC--ILVLWSYGDR--D 188 (323)
T ss_pred EEECCCEEEECCCCCCCCCCCCCEECC-----CCC------------------HHHHHHHHHCCE--EEEEEECCCH--H
T ss_conf 323780589807787556556641268-----600------------------347999974780--8999403997--8
Q ss_pred CHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHHH--HCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 3389999998419-86999816723422322655--08641343101000000000015631052113887753233103
Q gi|254780960|r 156 GGYELVHTMKQNG-ASTLLVTGGFSIFARFIAQH--LGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQ 232 (297)
Q Consensus 156 ~~~~~i~~l~~~g-~~v~iisg~~~~~~~~ia~~--lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~ 232 (297)
-+.+.++.++-.+ +--+++|||+..-.....+. .-++..+-..+.-..-.+....... .+ .+|..+......+|
T Consensus 189 HV~~Sm~~vkl~~RYFd~i~~gG~~~~~~~~~~t~~~~~d~~y~~~~~~~pf~l~~~~~~~-LP--KSPrvVL~~L~~~G 265 (323)
T TIGR01684 189 HVVESMRKVKLDRRYFDIILSGGHKAEEYSTASTERVLLDRVYKKVFTKTPFYLNLTDGKR-LP--KSPRVVLWYLADKG 265 (323)
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEEHEECEEEEEEEECCEECCCCCCCC-CC--CCCCHHHHHHHHCC
T ss_conf 9999998607775124589817820255788642200100101033531333527874224-79--98705453324669
Q ss_pred CCCCEEEEE
Q ss_conf 776679999
Q gi|254780960|r 233 INPEDTIAV 241 (297)
Q Consensus 233 ~~~~~v~av 241 (297)
+..-.++.-
T Consensus 266 ~~~~KsitL 274 (323)
T TIGR01684 266 VNYIKSITL 274 (323)
T ss_pred CEEEEEEEE
T ss_conf 168644888
No 141
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase; InterPro: IPR004446 In a number of species, including Escherichia coli, the histidine biosynthetic enzymes imidazole glycerol phosphate dehydratase and histidinol phosphatase are found together in the bifunctional protein HisB. This family represents a protein closely related to the histidinol phosphatase domain of HisB. The protein is found both in Helicobacter pylori, for which the histidine biosynthetic pathway appears to be absent, and in species that also have a bifunctional HisB protein..
Probab=92.17 E-value=0.39 Score=25.77 Aligned_cols=123 Identities=22% Similarity=0.275 Sum_probs=75.7
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECC------------CHHHHHHHHHHH----C--CCH-HHHHCCCCHHHCCCCCC
Q ss_conf 1134543389999998419869998167------------234223226550----8--641-34310100000000001
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGG------------FSIFARFIAQHL----G--FDQ-YYANRFIEKDDRLTGQV 210 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~------------~~~~~~~ia~~l----g--i~~-~~a~~~~~~~~~~~~~~ 210 (297)
...+..|+.++++.+|+.|+.+++||.- |..+++-+...| + ++. +||...+.. ..+++
T Consensus 24 ~F~F~~Gv~~~l~~~K~~Gy~L~lvTNQSGI~RG~ft~~~F~~LT~~~~~SLf~e~d~~LDGIYyC~H~p~~---~~~e~ 100 (178)
T TIGR00213 24 NFEFIDGVIDALRELKKLGYKLVLVTNQSGIARGYFTEKQFEQLTEWLDWSLFAERDVDLDGIYYCPHHPEG---SKEEY 100 (178)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC---CHHHH
T ss_conf 321556699999998745827889874565543542778899999999888765248873632445789732---01356
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE---CC---CHHHHHHCCEEEE
Q ss_conf 56310521138877532331037766799997892348899848931898---79---5789985898995
Q gi|254780960|r 211 MEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF---HA---KPALAKQAKIRID 275 (297)
Q Consensus 211 ~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~---~a---~~~v~~~Ad~~~~ 275 (297)
-...-=..-|+..+..-.+.++|.+.+.+||||-..|+.|==.|-|+.-+ .+ +|.....+|++++
T Consensus 101 ~~~C~CRKPkp~~lL~A~~~~~I~~~~S~MvGDK~~D~~Ag~~A~Vk~~~L~~~~~~~Tp~~e~i~~~~l~ 171 (178)
T TIGR00213 101 KENCDCRKPKPGLLLQAAKELKIDLEQSFMVGDKVEDMKAGLNAKVKNNVLVRTGKPVTPESEWIADKVLK 171 (178)
T ss_pred HHCCCCCCCCHHHHHHHHHHHCCCHHHCEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 62267789761358877787213523222203777898887511012346775088569852114677777
No 142
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase; InterPro: IPR011949 This family of proteins includes uncharacterised sequences from eukaryotes, cyanobacteria and Leptospira as well as the DREG-2 protein from Drosophila melanogaster which has been identified as a rhythmically (diurnally) regulated gene . This family is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs . The subfamilies are defined based on the location and the observed or predicted fold of a so-called, capping domain, , or the absence of such a domain. This family is a member of subfamily 1A in which the cap domain consists of a predicted alpha helical bundle found in between the first and second catalytic motifs. A distinctive feature of this family is a conserved tandem pair of tryptophan residues in the cap domain. The most divergent sequences included within the scope of this entry are from plants and have "FW" at this position instead. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes..
Probab=92.16 E-value=0.79 Score=23.87 Aligned_cols=92 Identities=24% Similarity=0.465 Sum_probs=65.0
Q ss_pred CCCC-CHHHHHHHHHHCCC--EEEEEECCCHHHHHHHHHHHCC-CHHHHHCCCCHHHCCCCCCCCCCCCHHHHH--HHHH
Q ss_conf 3454-33899999984198--6999816723422322655086-413431010000000000156310521138--8775
Q gi|254780960|r 152 TYNP-GGYELVHTMKQNGA--STLLVTGGFSIFARFIAQHLGF-DQYYANRFIEKDDRLTGQVMEPIIDGTAKS--QILL 225 (297)
Q Consensus 152 ~~~~-~~~~~i~~l~~~g~--~v~iisg~~~~~~~~ia~~lgi-~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~--~~~~ 225 (297)
.+.+ ++.++++.+|+.|+ .+.+||. ++.-.+.+-+.+|+ .+.+.-...-.+ -+..|| ..-.
T Consensus 116 ~~~~~d~~~~L~~~r~~g~k~~lgviSN-FD~RL~~~L~~~GL~~~~fd~~~~S~e------------~g~eKPDp~IF~ 182 (224)
T TIGR02252 116 QVYPPDAQKLLKDLREEGLKVKLGVISN-FDSRLRGVLEALGLFLEYFDFVVTSYE------------VGAEKPDPKIFQ 182 (224)
T ss_pred EECCCCHHHHHHHHHHCCCCEEEEEEEC-CHHHHHHHHHHCCCCHHHHHHEEEHHH------------HCCCCCCHHHHH
T ss_conf 2037557899999997289658998746-513378999760824354404301466------------257898867899
Q ss_pred HHHHHHC------CCCCEEEEEECCC-CHHHHHHHCCC
Q ss_conf 3233103------7766799997892-34889984893
Q gi|254780960|r 226 EAIQKLQ------INPEDTIAVGDGN-NDLDMLRVAGY 256 (297)
Q Consensus 226 ~l~~~~~------~~~~~v~avGDg~-ND~pmL~~Agv 256 (297)
.-+++.+ +++++|+=|||+. ||...=|.+|.
T Consensus 183 ~Al~~~~~~~~~~~~p~~~~HiGD~~~~D~~gA~~~G~ 220 (224)
T TIGR02252 183 KALERAGKKLTKEISPEEALHIGDSLRNDYEGARAAGW 220 (224)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCC
T ss_conf 99999888750357723377626880333365787386
No 143
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase; InterPro: IPR011945 This entry represents a small clade of sequences from the metazoa and bacteria. In eukaryotes, this domain exists as an N-terminal fusion to the soluble epoxide hydrolase enzyme and has recently been shown to be an active phosphatase, although the nature of the biological substrate is unclear . These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain indicate membership in subfamily IA..
Probab=91.86 E-value=0.24 Score=26.99 Aligned_cols=89 Identities=19% Similarity=0.253 Sum_probs=63.8
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHH-HHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHH--HHH
Q ss_conf 113454338999999841986999816723422-32265508641343101000000000015631052113887--753
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFA-RFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQI--LLE 226 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~-~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~~ 226 (297)
.-++.|.+.++++.||.+|+++.++|..+.--- --+|+.-+- ..++.+-....+.+.|-...+..||+. -..
T Consensus 103 ~tkl~p~m~~~i~~~~~~Gfkt~~lTNN~~l~~GPGmaq~~~~-----~~~p~~~~~~FD~VvESc~~G~~KPD~riY~L 177 (228)
T TIGR02247 103 VTKLLPEMVKAIKSLRAKGFKTALLTNNFYLDKGPGMAQEAEE-----ALLPSDVMALFDEVVESCLEGLRKPDPRIYQL 177 (228)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHCCC-----CCCHHHHHHHCCHHHHHHHCCCCCCCHHHHHH
T ss_conf 0256878999999997577758886167305677640122046-----61136676441065566360788997679999
Q ss_pred HHHHHCCCCCEEEEEEC
Q ss_conf 23310377667999978
Q gi|254780960|r 227 AIQKLQINPEDTIAVGD 243 (297)
Q Consensus 227 l~~~~~~~~~~v~avGD 243 (297)
.+++++..+++|+.-=|
T Consensus 178 ~~~rl~l~P~~~vFLDD 194 (228)
T TIGR02247 178 VLERLGLKPEECVFLDD 194 (228)
T ss_pred HHHHCCCCCCCEEEECC
T ss_conf 99970799101677244
No 144
>pfam06941 NT5C 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C). This family consists of several 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C (NT5C) proteins. 5'(3')-Deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known.
Probab=91.45 E-value=0.81 Score=23.78 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=26.6
Q ss_pred HHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHH
Q ss_conf 211345433899999984198699981672342
Q gi|254780960|r 149 KKITYNPGGYELVHTMKQNGASTLLVTGGFSIF 181 (297)
Q Consensus 149 ~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~ 181 (297)
...++.|++.++++.|...|..+++||..+...
T Consensus 70 ~~l~pi~gA~e~l~~L~~~g~~~~~Its~~~~~ 102 (191)
T pfam06941 70 LDLEPIPGAREALRELADEGFTIVFITTSPFQH 102 (191)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 379968109999999997799589997888757
No 145
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues , ..
Probab=91.26 E-value=0.11 Score=29.23 Aligned_cols=137 Identities=16% Similarity=0.170 Sum_probs=81.8
Q ss_pred CCEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 44487227502652452002788741223277888765202441001234556876420045689887421134543389
Q gi|254780960|r 80 KNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYE 159 (297)
Q Consensus 80 ~~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (297)
.++++||+|+|+...+.+..+.. +..+++....+ ...+.....+....+.+.+++
T Consensus 2 p~vi~fDlD~T~W~~~~~~~l~~------------------------sPFK~~~~~~~-evl~i~D~~G~eltL~~~~Rd 56 (183)
T TIGR01685 2 PKVIVFDLDGTLWDHYDISLLKG------------------------SPFKPVKSENS-EVLIIIDKEGAELTLFKEVRD 56 (183)
T ss_pred CEEEEECCCCCCCCCCCHHCCCC------------------------CCCCCCCCCCC-CEEEEEECCCCEEEECCCCHH
T ss_conf 53899827887588300001479------------------------88644378887-478998389976886152047
Q ss_pred HHHHHHH----CCCEEEEEECC-CHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC--
Q ss_conf 9999984----19869998167-2342232265508641343101000000000015631052113887753233103--
Q gi|254780960|r 160 LVHTMKQ----NGASTLLVTGG-FSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQ-- 232 (297)
Q Consensus 160 ~i~~l~~----~g~~v~iisg~-~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~-- 232 (297)
.++.++. .|..+.+.|-. .+..++.+-+.+.|.++-+...+..+- |.....+.. ..|...+..++.+.+
T Consensus 57 ~L~~l~~nPkW~g~~l~~~s~~~~P~~A~e~L~~f~~~dYAG~~~Pl~~l-F~~~~~~~~---p~K~~~~~~~L~~~~~~ 132 (183)
T TIGR01685 57 VLQSLKDNPKWAGLFLATASWNDVPEVAYEILKIFKIKDYAGKVVPLAEL-FDELVEKEK---PSKIKFLEEILKKLKEK 132 (183)
T ss_pred HHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCEECCCCCEECHHHH-HHHHHHCCC---CCHHHHHHHHHHHHHHC
T ss_conf 88887607220242322022157458999998872230357733046775-468650568---72478999999998632
Q ss_pred ----CCCCEEEEEECCC
Q ss_conf ----7766799997892
Q gi|254780960|r 233 ----INPEDTIAVGDGN 245 (297)
Q Consensus 233 ----~~~~~v~avGDg~ 245 (297)
+...+++.+=|-.
T Consensus 133 ~~~~~k~~~i~f~Dd~~ 149 (183)
T TIGR01685 133 SGVELKPKEILFIDDRS 149 (183)
T ss_pred CCCEECCCCEEEECCCC
T ss_conf 89213403147621675
No 146
>pfam08235 LNS2 LNS2 (Lipin/Ned1/Smp2). This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain (Pfam: PF04571) and phosphatidylinositol transfer proteins. SMP2 (also known as PAH1) is involved in plasmid maintenance and respiration, and has been identified as a Mg2+-dependent phosphatidate phosphatase (EC:3.1.3.4) that contains a haloacid dehalogenase (HAD)-like domain. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=91.18 E-value=1 Score=23.19 Aligned_cols=107 Identities=20% Similarity=0.088 Sum_probs=63.0
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHH-------CCCC-CCCCCCC--CHHH
Q ss_conf 1134543389999998419869998167234223226550864134310100000-------0000-0156310--5211
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDD-------RLTG-QVMEPII--DGTA 219 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~-------~~~~-~~~~~~~--~~~~ 219 (297)
+|+..+|+.++...+++.|++..-+|+=+...+....+-+. +...+.....++ .+.. -..+.+. ...-
T Consensus 25 ~Dwth~Gva~ly~~i~~nGY~ilYLTaR~i~qa~~Tr~yL~--~~~Q~~~~LP~GPv~lsp~~l~~al~rEvi~k~p~~F 102 (156)
T pfam08235 25 KDWVHAGVVDLVRKIQENGYLIIYLTARPDGQADRTRAYLS--QHKQDGYNLPHGPVILSPDRLFAALHREVILKKPLVF 102 (156)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--HHHCCCCCCCCCCEEECCHHHHHHHHHHHHCCCCHHH
T ss_conf 99763019999999997893699983425666899999999--8351885388998897763378875635550790899
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEE
Q ss_conf 388775323310377667999978923488998489318
Q gi|254780960|r 220 KSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGV 258 (297)
Q Consensus 220 k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGV 258 (297)
|...++.+........--.+.+|...||+-+-+.+|+-.
T Consensus 103 Ki~~L~di~~lfp~~~pfyAgFGNr~tD~~aY~~vgip~ 141 (156)
T pfam08235 103 KIACLRDIRQLFPNRNPFYAGFGNRIKDVIVYRSVGVPP 141 (156)
T ss_pred HHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHCCCCH
T ss_conf 999999999876888982661689653799999769994
No 147
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=91.02 E-value=0.68 Score=24.26 Aligned_cols=67 Identities=15% Similarity=0.297 Sum_probs=45.4
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHH-----HCCCCCEECCC-----------CEEEEEEECCC-CCHHHHHHHHHHHHHHC
Q ss_conf 999984588876899999999986-----07888357318-----------80499982688-89489999999840216
Q gi|254780960|r 4 IATLITHRSHPILNISLVKQIMQI-----VNSSIFYWLAD-----------SIACDIILPLE-GMIDHHRSKILSIIADK 66 (297)
Q Consensus 4 v~TLi~~~~~~~l~~~~~~~i~~~-----~~~~~~~~La~-----------~~A~e~~~~~~-~~~~~~~~~l~~~~~~~ 66 (297)
+.||++.+ +++..+.++... .+.+...+|+. ...+|+.++.. .+.+..+.++...+.+.
T Consensus 1 IvTlLgr~----lta~~la~Vs~~ia~~glNID~I~RLSgr~~l~~~~~~p~aciE~svrG~~~d~~~lr~~l~~la~~l 76 (84)
T cd04871 1 IVTLLGRP----LTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELASEL 76 (84)
T ss_pred CEEEECCC----CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 98996597----99999999999999769996678615577655456789608999999805788899999999988772
Q ss_pred CCCEEECC
Q ss_conf 86346214
Q gi|254780960|r 67 PIDLIIHR 74 (297)
Q Consensus 67 ~~d~~~~~ 74 (297)
++|++++.
T Consensus 77 ~vDIA~Q~ 84 (84)
T cd04871 77 NVDIAFQR 84 (84)
T ss_pred CCCEEEEC
T ss_conf 97278759
No 148
>pfam02358 Trehalose_PPase Trehalose-phosphatase. This family consist of trehalose-phosphatases EC:3.1.3.12 these enzyme catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. The aligned region is present in trehalose-phosphatases and comprises the entire length of the protein it is also found in the C-terminus of trehalose-6-phosphate synthase EC:2.4.1.15 adjacent to the trehalose-6-phosphate synthase domain - pfam00982. It would appear that the two equivalent genes in the E. coli otsBA operon otsA the trehalose-6-phosphate synthase and otsB trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance.
Probab=90.89 E-value=0.42 Score=25.54 Aligned_cols=68 Identities=24% Similarity=0.327 Sum_probs=46.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCC---CEEEEEECCCCHHHHHHHC------CCEEEECCCH--HHHHHCCEEEEC
Q ss_conf 015631052113887753233103776---6799997892348899848------9318987957--899858989956
Q gi|254780960|r 209 QVMEPIIDGTAKSQILLEAIQKLQINP---EDTIAVGDGNNDLDMLRVA------GYGVAFHAKP--ALAKQAKIRIDH 276 (297)
Q Consensus 209 ~~~~~~~~~~~k~~~~~~l~~~~~~~~---~~v~avGDg~ND~pmL~~A------gvGVA~~a~~--~v~~~Ad~~~~~ 276 (297)
.+.+..+.+..|+.+++.+.++++... .-++++||..+|..|+++. |++|-++..+ .-.-.|.+.+..
T Consensus 155 ~vvEv~p~~~~KG~Av~~ll~~~~~~~~~~~~~l~~GDD~TDEd~F~~l~~~~~~g~~i~v~~v~vg~~~t~A~~~l~d 233 (235)
T pfam02358 155 KVVEVRPVGVSKGKAAERLLEELGSAGSPPDFPLCIGDDRTDEDMFDVVNPTKMSGLSIEVGATSVGSKPSSAKYFLDD 233 (235)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEECCC
T ss_conf 5999994899849999999985651269986799981896289999997624679985499975369967523376899
No 149
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain; InterPro: IPR012821 Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by IPR012822 from INTERPRO..
Probab=90.64 E-value=0.36 Score=25.96 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=70.5
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 11345433899999984198699981672342232265508641343101000000000015631052113887753233
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQ 229 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~ 229 (297)
.+.-.|..++.-+.|++++.++.+|-- .+....+++...+|..+++-+.-
T Consensus 124 ~p~~~p~l~~~~~~Lr~~~~~~~~~ls------------------------------~~~FLDv~P~RAS~~~A~Ryls~ 173 (241)
T TIGR02471 124 DPEDEPSLKQIRQRLRQQELAVKVILS------------------------------LGAFLDVLPLRASKGLALRYLSY 173 (241)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEEE------------------------------CCCCCCEEECCCCCHHHHHHHHH
T ss_conf 767787878999998615874779860------------------------------46745434203770489999999
Q ss_pred HHCCCCCEEEEEECCCCHHHHHHHCCCEEEE-C-CCHHHHHHCC
Q ss_conf 1037766799997892348899848931898-7-9578998589
Q gi|254780960|r 230 KLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-H-AKPALAKQAK 271 (297)
Q Consensus 230 ~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~-~-a~~~v~~~Ad 271 (297)
++++++++...+||+-||..|++=--.||=+ | =.|.+-.-++
T Consensus 174 ~wGlpLe~~Lvag~~g~De~ml~G~T~~VVvgnrhdpeLe~Lr~ 217 (241)
T TIGR02471 174 RWGLPLEQLLVAGDSGNDEEMLRGDTLGVVVGNRHDPELEKLRE 217 (241)
T ss_pred HHCCCHHHEEEEECCCCCHHHHCCCCEEEEEECCCCHHHHHHHC
T ss_conf 82797458145406888545542770158851353844433203
No 150
>KOG3109 consensus
Probab=90.39 E-value=1.2 Score=22.74 Aligned_cols=104 Identities=13% Similarity=0.218 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 45433899999984198699981672342232265508641343101000000000015631052113887753233103
Q gi|254780960|r 153 YNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQ 232 (297)
Q Consensus 153 ~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~ 232 (297)
+-+..++.+-.+++.+ .++.|.+...-+.++-+.+||.+++-....++...-. ....+.++ .+++.....+..|
T Consensus 101 PD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~--~~~~vcKP--~~~afE~a~k~ag 174 (244)
T KOG3109 101 PDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPI--EKTVVCKP--SEEAFEKAMKVAG 174 (244)
T ss_pred CCHHHHHHHHHCCCCC--EEEECCCCHHHHHHHHHHHCHHHHCCCEEEEECCCCC--CCCEEECC--CHHHHHHHHHHHC
T ss_conf 9878999998374135--7984177289999999985768760230675116877--78545457--8899999999818
Q ss_pred CC-CCEEEEEECCCCHHHHHHHCCCEEEECC
Q ss_conf 77-6679999789234889984893189879
Q gi|254780960|r 233 IN-PEDTIAVGDGNNDLDMLRVAGYGVAFHA 262 (297)
Q Consensus 233 ~~-~~~v~avGDg~ND~pmL~~AgvGVA~~a 262 (297)
+. .++++++-||.+-+..=+..|..--+.+
T Consensus 175 i~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~ 205 (244)
T KOG3109 175 IDSPRNTYFFDDSERNIQTAKEVGLKTVLVG 205 (244)
T ss_pred CCCCCCEEEECCCHHHHHHHHHCCCEEEEEE
T ss_conf 7886744897175266898885366469997
No 151
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=89.45 E-value=1.4 Score=22.28 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCC-CHHHHHHHCCCEEEE
Q ss_conf 138877532331037766799997892-348899848931898
Q gi|254780960|r 219 AKSQILLEAIQKLQINPEDTIAVGDGN-NDLDMLRVAGYGVAF 260 (297)
Q Consensus 219 ~k~~~~~~l~~~~~~~~~~v~avGDg~-ND~pmL~~AgvGVA~ 260 (297)
-.+......++.++...+++.||||+. +|+.+=+.+|+.-.+
T Consensus 191 P~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~L 233 (269)
T COG0647 191 PSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLL 233 (269)
T ss_pred CCHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 8899999999981798320899858824569999985997799
No 152
>PTZ00174 phosphomannomutase; Provisional
Probab=89.24 E-value=0.52 Score=24.97 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC----CCCHHHHHHHC-CCEEEECCCHHHHH
Q ss_conf 3105211388775323310377667999978----92348899848-93189879578998
Q gi|254780960|r 213 PIIDGTAKSQILLEAIQKLQINPEDTIAVGD----GNNDLDMLRVA-GYGVAFHAKPALAK 268 (297)
Q Consensus 213 ~~~~~~~k~~~~~~l~~~~~~~~~~v~avGD----g~ND~pmL~~A-gvGVA~~a~~~v~~ 268 (297)
+.+.+..|...++.+.. ..++++.||| |=||-|..... ..|+.+..-+...+
T Consensus 182 I~p~G~DK~~~l~~~~~----~~~~i~FfGD~~~~gGNDy~i~~~~~~~g~~V~~~~dT~~ 238 (247)
T PTZ00174 182 VFPKGWDKTYCLRHVEN----KFKEIHFFGDKTFEGGNDYEIYNDPRVIGHKVKSPKDTIK 238 (247)
T ss_pred ECCCCCCHHHHHHHHHC----CCCEEEEEECCCCCCCCCHHHHHCCCCCEEECCCHHHHHH
T ss_conf 20178878999986524----7776999826888999868888488967687699999999
No 153
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC; InterPro: IPR010033 This entry represents the IIIC subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate nucleophile hydrolases. Subfamily III, which includes subfamily IIIA (IPR006549 from INTERPRO) and subfamily IIIB (IPR005519 from INTERPRO) contains sequences which do not contain either of the insert domains between the 1st and 2nd conserved catalytic motifs, subfamily I (IPR006388 from INTERPRO, IPR006402 from INTERPRO, IPR006439 from INTERPRO, IPR006383 from INTERPRO, IPR006545 from INTERPRO, IPR006434 from INTERPRO, and IPR006435 from INTERPRO), or between the 2nd and 3rd, subfamily II (IPR006357 from INTERPRO, and IPR006379 from INTERPRO). Subfamily IIIC contains five relatively distantly related clades: a family of viral proteins (IPR007827 from INTERPRO), a family of eukaryotic proteins called MDP-1 and a family of archaeal proteins most closely related to MDP-1 (IPR010036 from INTERPRO), a family of bacteria including the Streptomyces FkbH protein (IPR010037 from INTERPRO), and a small clade including the Pasteurella multocida BcbF and EcbF proteins. The overall lack of species overlap among these clades may indicate a conserved function, but the degree of divergence between the clades and the differences in architecture outside of the domain in some clades warns against such a conclusion. No member of this subfamily is characterised with respect to function, however the MDP-1 protein is a characterised phosphatase. All of the characterised enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC..
Probab=89.11 E-value=0.3 Score=26.42 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=48.5
Q ss_pred CEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCCCCHH
Q ss_conf 44872275026524520027887412232778887652024410012345568764200--4568988742113454338
Q gi|254780960|r 81 NLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTS--TKIIDSLLEKKITYNPGGY 158 (297)
Q Consensus 81 ~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 158 (297)
++++||+|+||+.++....+.. +| +.+.- .+ .....+.......+.+.++
T Consensus 1 ~v~vfDLD~TLw~~~~~~~l~~--------------------PF-----K~~~~---~~~~~~~~~l~~~~~~~l~k~~~ 52 (179)
T TIGR01681 1 KVIVFDLDNTLWTGENDSLLKG--------------------PF-----KVVGE---DPSIIEDIELTEVTELTLIKEIR 52 (179)
T ss_pred CEEEEECCCCCCCCCCCCCCCC--------------------CC-----CCCCC---CCCEEEECCCCCCCCCCHHHHHH
T ss_conf 9688846874356656230368--------------------62-----21058---88713213478885520236789
Q ss_pred HHHHHHHHC---CCEEEEEECC-CHHHHHHHHHH
Q ss_conf 999999841---9869998167-23422322655
Q gi|254780960|r 159 ELVHTMKQN---GASTLLVTGG-FSIFARFIAQH 188 (297)
Q Consensus 159 ~~i~~l~~~---g~~v~iisg~-~~~~~~~ia~~ 188 (297)
+.++++++. |+.+++.|-. -...+..+.+.
T Consensus 53 ~~L~~l~~~PWaG~~l~l~S~n~~~~~~~~~~~~ 86 (179)
T TIGR01681 53 DVLQTLKKNPWAGFLLALASYNDDEHVAYELLKI 86 (179)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 9999997289886799986438857999998731
No 154
>pfam05152 DUF705 Protein of unknown function (DUF705). This family contains several uncharacterized Baculovirus proteins.
Probab=87.84 E-value=1.2 Score=22.65 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=16.2
Q ss_pred CCCCCEEEECCCEEEEECCCC
Q ss_conf 553444872275026524520
Q gi|254780960|r 77 NRRKNLLIADMDSTMIEQECI 97 (297)
Q Consensus 77 ~~~~~l~~~d~d~tli~~~~l 97 (297)
...+.+++||+|+|||.++-.
T Consensus 119 ~e~PHViVFDLDsTLITde~~ 139 (297)
T pfam05152 119 WEPPHVIVFDLDSTLITDEEE 139 (297)
T ss_pred CCCCEEEEECCCCCCCCCCCC
T ss_conf 579848998387765146542
No 155
>PRK04554 consensus
Probab=86.01 E-value=1.1 Score=22.90 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=25.1
Q ss_pred HHHHHHHHHHCC-CEEEEEECCCH--HHHHHHHHHHCCCHHHHH
Q ss_conf 389999998419-86999816723--422322655086413431
Q gi|254780960|r 157 GYELVHTMKQNG-ASTLLVTGGFS--IFARFIAQHLGFDQYYAN 197 (297)
Q Consensus 157 ~~~~i~~l~~~g-~~v~iisg~~~--~~~~~ia~~lgi~~~~a~ 197 (297)
.....+.++... -+++++|-|.. ..++.+|+.+|.+..+..
T Consensus 152 ~~~l~~~i~~~~~~~~vvVsPD~G~~~ra~~~A~~L~~~~a~~~ 195 (327)
T PRK04554 152 TPILLNDIKQQRIENLTVVSPDIGGVVRARAVAKSLNADLAIID 195 (327)
T ss_pred HHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 19999999860778728983795389999999975688779999
No 156
>KOG3040 consensus
Probab=85.93 E-value=1 Score=23.13 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf 1138877532331037766799997892348
Q gi|254780960|r 218 TAKSQILLEAIQKLQINPEDTIAVGDGNNDL 248 (297)
Q Consensus 218 ~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~ 248 (297)
.-.+.....-...++.+.++++|+||-.||=
T Consensus 181 KP~~~fFe~al~~~gv~p~~aVMIGDD~~dD 211 (262)
T KOG3040 181 KPSPFFFESALQALGVDPEEAVMIGDDLNDD 211 (262)
T ss_pred CCCHHHHHHHHHHCCCCHHHHEEECCCCCCC
T ss_conf 9977899999976389847916775622322
No 157
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase; InterPro: IPR006323 These sequences represent an enzyme that catalyzes the cleavage of the carbon phosphorous bond of a phosphonate. The mechanism depends on the substrate having a carbonyl one carbon away from the cleavage position. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base . The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilised by microorganisms as a chemical warfare agent..
Probab=80.59 E-value=3.9 Score=19.65 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCC-CCCCCCCCCC
Q ss_conf 004568988742113454338999999841986999816723422322655086413431010000000-0001563105
Q gi|254780960|r 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRL-TGQVMEPIID 216 (297)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~-~~~~~~~~~~ 216 (297)
....+....+...-.+.|.+.+.|+.||..|+|+.=-||=+...-+-+.+.-....+....+...|+.- .|+......
T Consensus 83 ~F~pl~ia~~a~haapIp~~levia~lR~rGiKIGScsGYpr~vMd~v~~~Aa~~GY~pD~vVatDdvpq~GRP~P~~a- 161 (199)
T TIGR01422 83 EFMPLQIAKVAEHAAPIPAVLEVIAELRERGIKIGSCSGYPREVMDIVVAEAALQGYKPDFVVATDDVPQAGRPYPFMA- 161 (199)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHH-
T ss_conf 6168999986554055536899999997388444247987578999999999747897664246622467889747899-
Q ss_pred HHHHHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHCC
Q ss_conf 211388775323310377-667999978923488998489
Q gi|254780960|r 217 GTAKSQILLEAIQKLQIN-PEDTIAVGDGNNDLDMLRVAG 255 (297)
Q Consensus 217 ~~~k~~~~~~l~~~~~~~-~~~v~avGDg~ND~pmL~~Ag 255 (297)
++.. -.||+. ...|+=|||...|+.==+.||
T Consensus 162 -------lkNv-ieLGv~dv~a~vKVdDt~pgi~EGrnAG 193 (199)
T TIGR01422 162 -------LKNV-IELGVDDVNACVKVDDTLPGIKEGRNAG 193 (199)
T ss_pred -------HHHH-HHCCCCCCCCEEECCCCCCCHHHCCCCC
T ss_conf -------9989-8707522100353267764212021257
No 158
>PRK02270 consensus
Probab=80.24 E-value=2.7 Score=20.59 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=23.8
Q ss_pred HHHHHHHHHHCCCEEEEEECCCHH--HHHHHHHHHCC
Q ss_conf 389999998419869998167234--22322655086
Q gi|254780960|r 157 GYELVHTMKQNGASTLLVTGGFSI--FARFIAQHLGF 191 (297)
Q Consensus 157 ~~~~i~~l~~~g~~v~iisg~~~~--~~~~ia~~lgi 191 (297)
...+.+.++....+++++|-|.-. -++.+++.+|-
T Consensus 150 ~~~l~~~i~~~~~~~vvVsPD~G~~~ra~~~a~~Lg~ 186 (327)
T PRK02270 150 QYILAKELKKKNEKFTVVSPDHGGAVRARILAEIISD 186 (327)
T ss_pred CHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 2787998864068718997697489999999998538
No 159
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily subfamily IIA hydrolase, TIGR01459; InterPro: IPR006356 These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are restricted to the Gram-negative and primarily alpha proteobacteria. Only one sequence has been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some scepticism..
Probab=79.55 E-value=4.2 Score=19.44 Aligned_cols=24 Identities=4% Similarity=0.030 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHCCCCCEECCC
Q ss_conf 689999999998607888357318
Q gi|254780960|r 15 ILNISLVKQIMQIVNSSIFYWLAD 38 (297)
Q Consensus 15 ~l~~~~~~~i~~~~~~~~~~~La~ 38 (297)
..-|-.++.+.+....+.++|+=+
T Consensus 24 ~~yPGav~~l~~~~a~gk~V~f~s 47 (243)
T TIGR01459 24 EAYPGAVEALAKLKAEGKTVYFVS 47 (243)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 895168999999985589189997
No 160
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=79.21 E-value=3.5 Score=19.93 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=19.7
Q ss_pred HHHHHHHHHHCC-CEEEEEECCCH--HHHHHHHHHHC
Q ss_conf 389999998419-86999816723--42232265508
Q gi|254780960|r 157 GYELVHTMKQNG-ASTLLVTGGFS--IFARFIAQHLG 190 (297)
Q Consensus 157 ~~~~i~~l~~~g-~~v~iisg~~~--~~~~~ia~~lg 190 (297)
.....+.++..+ -++++||-|.- .-++.+++.++
T Consensus 166 ~~~l~~yi~~~~~~~~vVVsPD~G~~krA~~~A~~L~ 202 (331)
T PRK02812 166 SPVLIDYLASKNLEDIVVVSPDVGGVARARAFAKKLN 202 (331)
T ss_pred CCHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCC
T ss_conf 6067999986288871797479408999999999727
No 161
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=78.77 E-value=2.9 Score=20.36 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHCC---CEEEEEECCCH--HHHHHHHHHHCCCHHHH
Q ss_conf 3389999998419---86999816723--42232265508641343
Q gi|254780960|r 156 GGYELVHTMKQNG---ASTLLVTGGFS--IFARFIAQHLGFDQYYA 196 (297)
Q Consensus 156 ~~~~~i~~l~~~g---~~v~iisg~~~--~~~~~ia~~lgi~~~~a 196 (297)
......+.+++.+ -+++++|-|.- ..++.+++.+|.+..+.
T Consensus 149 ~~~~~~~~i~~~~~~~~~~vvVsPD~G~~~ra~~~A~~l~~~~~~~ 194 (321)
T PRK02269 149 GAPLIADYFDRHGLVGEDVVVVSPDHGGVTRARKLAQFLKTPIAII 194 (321)
T ss_pred ECHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 0389999999847987670897179319999999998627878999
No 162
>COG4996 Predicted phosphatase [General function prediction only]
Probab=77.51 E-value=4.8 Score=19.07 Aligned_cols=123 Identities=22% Similarity=0.253 Sum_probs=72.3
Q ss_pred CEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 44872275026524520027887412232778887652024410012345568764200456898874211345433899
Q gi|254780960|r 81 NLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYEL 160 (297)
Q Consensus 81 ~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (297)
++++||.|+|+.+...+..+. .+| +++.. .......+....+.+.+++.
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~--------------------pPf-----~rVs~------n~i~Ds~G~ev~L~~~v~~~ 49 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLE--------------------PPF-----RRVSS------NTIEDSKGREVHLFPDVKET 49 (164)
T ss_pred CCEEEECCCCCCCCCCCHHCC--------------------CCC-----EECCC------CCEECCCCEEEEECHHHHHH
T ss_conf 917981777500346612108--------------------860-----14475------62442898089973789999
Q ss_pred HHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHH-HHHHH--HHHCCCCCE
Q ss_conf 999984198699981672342232265508641343101000000000015631052113887-75323--310377667
Q gi|254780960|r 161 VHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQI-LLEAI--QKLQINPED 237 (297)
Q Consensus 161 i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~~l~--~~~~~~~~~ 237 (297)
.+..+..|+-+...|=.++..+-..-+.+++.+++.- .+.++.+.+..-... ++++- ..+.+...+
T Consensus 50 l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy-----------~ViePhP~K~~ML~~llr~i~~er~~~ikP~~ 118 (164)
T COG4996 50 LKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHY-----------IVIEPHPYKFLMLSQLLREINTERNQKIKPSE 118 (164)
T ss_pred HHHHHHCCCEEEEEECCCHHHHHHHHHHHCHHHHEEE-----------EEECCCCHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 9998747838987652766899999998363653788-----------99537870677999999999885165127430
Q ss_pred EEEEECCC
Q ss_conf 99997892
Q gi|254780960|r 238 TIAVGDGN 245 (297)
Q Consensus 238 v~avGDg~ 245 (297)
++.+-|--
T Consensus 119 Ivy~DDR~ 126 (164)
T COG4996 119 IVYLDDRR 126 (164)
T ss_pred EEEEECCC
T ss_conf 79982553
No 163
>pfam00875 DNA_photolyase DNA photolyase. This domain binds a light harvesting cofactor.
Probab=77.43 E-value=2.4 Score=20.93 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 43389999998419869998167234223226550864134310100000000001563105211388775323310377
Q gi|254780960|r 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQIN 234 (297)
Q Consensus 155 ~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~~ 234 (297)
....++-+.|++.|+...+..|++......+.++.++..++++..... .....-+.+...+...++.
T Consensus 53 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~i~~v~~n~~~~~-------------~~~~rd~~v~~~l~~~~i~ 119 (164)
T pfam00875 53 ESLADLDESLAKLGIPLIVRRGDPAEVLPELAKELGASAVYWNRDYEP-------------YERRRDAAVKEALREAGIE 119 (164)
T ss_pred HHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCEEEEECCCCH-------------HHHHHHHHHHHHHHHCCCE
T ss_conf 999999999996688631058985899999999679999999167898-------------9999999999999854746
No 164
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family; InterPro: IPR006423 This group of sequences represents a set of bacterial lipoproteins belonging to a larger acid phosphatase family, which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles..
Probab=76.17 E-value=5.2 Score=18.84 Aligned_cols=141 Identities=15% Similarity=0.228 Sum_probs=74.5
Q ss_pred CCCEEECCCC-CCCCCEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 8634621455-553444872275026524520027887412232778887652024410-01234556876420045689
Q gi|254780960|r 67 PIDLIIHRHE-NRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPF-QDSLRERISLFKGTSTKIID 144 (297)
Q Consensus 67 ~~d~~~~~~~-~~~~~l~~~d~d~tli~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 144 (297)
.+|-...... +..++-++.|.|.|+.+...=--+ ....+..| .+.|.+=+
T Consensus 86 ~ld~~~~~~k~G~kk~AivlDlDETvLDNsPY~gy----------------~v~~~k~f~~E~W~~W~------------ 137 (295)
T TIGR01533 86 RLDEELKKEKDGEKKYAIVLDLDETVLDNSPYQGY----------------QVLNNKPFDPEDWDKWV------------ 137 (295)
T ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHH----------------HHHCCCCCCCCCHHHHH------------
T ss_conf 99975321247898743771153201037655799----------------98807897987558998------------
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCC-H----HHHHHHHHHHCCCHHHHHCCC-CHHHCCCCCCCCCCCCHH
Q ss_conf 8874211345433899999984198699981672-3----422322655086413431010-000000000156310521
Q gi|254780960|r 145 SLLEKKITYNPGGYELVHTMKQNGASTLLVTGGF-S----IFARFIAQHLGFDQYYANRFI-EKDDRLTGQVMEPIIDGT 218 (297)
Q Consensus 145 ~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~-~----~~~~~ia~~lgi~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 218 (297)
......+.+|+.+-++.-..+|++|.-||.=. . .|.+.+ ++.||+.+--..+. .. -++.
T Consensus 138 --~~~~a~~vaGA~~Fl~ya~~kGv~iFYvsnR~~~~~~~aTl~nL-k~~g~P~~~~~hllll~------------~d~k 202 (295)
T TIGR01533 138 --QAAQAKPVAGALEFLNYANSKGVKIFYVSNRSDEKEKEATLENL-KKKGFPQADEEHLLLLK------------KDKK 202 (295)
T ss_pred --HHHCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH-HHCCCCCCCHHHEEEEC------------CCCC
T ss_conf --63117775107889999987592589965687301244207999-86387955501200003------------6899
Q ss_pred HHHHHHHHHHH-HHCCCCCEEEEEECCCCHHHHHHHC
Q ss_conf 13887753233-1037766799997892348899848
Q gi|254780960|r 219 AKSQILLEAIQ-KLQINPEDTIAVGDGNNDLDMLRVA 254 (297)
Q Consensus 219 ~k~~~~~~l~~-~~~~~~~~v~avGDg~ND~pmL~~A 254 (297)
+|...-..+.+ .+ +.|+-|||...|..-+...
T Consensus 203 ~KesRR~~v~kq~y----~iVLl~GDNL~DF~~~~~~ 235 (295)
T TIGR01533 203 SKESRRQKVQKQDY----EIVLLFGDNLLDFSDFFYK 235 (295)
T ss_pred CCHHHHHHHHHCCC----EEEEEECCCHHHHHHHHHH
T ss_conf 72578887521571----3899865872224576544
No 165
>pfam03031 NIF NLI interacting factor-like phosphatase. This family contains a number of NLI interacting factor isoforms and also an N-terminal regions of RNA polymerase II CTC phosphatase and FCP1 serine phosphatase. This region has been identified as the minimal phosphatase domain.
Probab=75.27 E-value=4.8 Score=19.09 Aligned_cols=96 Identities=15% Similarity=0.249 Sum_probs=55.7
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCH-HHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 11345433899999984198699981672342232265508641-34310100000000001563105211388775323
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ-YYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAI 228 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~-~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~ 228 (297)
....||+..+.++.+ ...+.+++-|.+....++++.+.+.... .+...+--+.....+. +...+ =.
T Consensus 26 ~v~~RP~l~~FL~~l-~~~yev~v~Ta~~~~ya~~vl~~ldp~~~~~~~~l~R~~c~~~~~-----------~~~~K-dL 92 (151)
T pfam03031 26 YVKKRPGLDEFLQEL-SKYYEIVIFTASSKEYADPVLDKLDPKKKYFKHRLYRESCTLTGG-----------NYYVK-DL 92 (151)
T ss_pred EEEECCCHHHHHHHH-HHCCEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCCEECCC-----------CEEEE-EH
T ss_conf 999896899999999-856589999078577999999986868888989998264688479-----------85788-87
Q ss_pred HHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE
Q ss_conf 31037766799997892348899848931898
Q gi|254780960|r 229 QKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF 260 (297)
Q Consensus 229 ~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~ 260 (297)
..++.++++|+.+=|+..=..+ .-+-||-+
T Consensus 93 ~~l~r~l~~vviVDd~~~~~~~--~p~N~i~i 122 (151)
T pfam03031 93 SLLGRDLSRVVIVDNSPRSFLL--QPDNGIPI 122 (151)
T ss_pred HHHCCCHHHEEEEECCHHHHCC--CCCCEEEE
T ss_conf 8838886788999398788545--84677175
No 166
>KOG2882 consensus
Probab=74.89 E-value=2.7 Score=20.55 Aligned_cols=45 Identities=27% Similarity=0.479 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHCCCE
Q ss_conf 3105211388775323310377667999978923-48899848931
Q gi|254780960|r 213 PIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNN-DLDMLRVAGYG 257 (297)
Q Consensus 213 ~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~N-D~pmL~~AgvG 257 (297)
+.+.+.-.......+.++.+++.++|+||||..| |+--=+.+|..
T Consensus 219 P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~ 264 (306)
T KOG2882 219 PIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFK 264 (306)
T ss_pred CEECCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCCC
T ss_conf 8105898889999999971889533889766320245676516961
No 167
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=74.70 E-value=1.6 Score=21.97 Aligned_cols=88 Identities=18% Similarity=0.128 Sum_probs=58.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCC----CEEEEC-CCHHHHHH-CCEEEECCCHHHH
Q ss_conf 01563105211388775323310377667999978923488998489----318987-95789985-8989956983276
Q gi|254780960|r 209 QVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAG----YGVAFH-AKPALAKQ-AKIRIDHSDLEAL 282 (297)
Q Consensus 209 ~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~Ag----vGVA~~-a~~~v~~~-Ad~~~~~~dl~~~ 282 (297)
.+.+..+.+.+|+..++.+..+......-+++.||-..|-.|+++.. ..|-++ +...++.- ++..-....+..+
T Consensus 172 ~vVEvrp~~~~KG~a~~~i~~~~~~~~~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~~~~t~a~~~~~~~~~~~~~l~~~ 251 (266)
T COG1877 172 MVVELRPPGVSKGAAIKYIMDELPFDGRFPIFAGDDLTDEDAFAAVNKLDSITVKVGVGSTQAKFRLAGVYGFLRSLYKL 251 (266)
T ss_pred EEEEEEECCCCHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 28999507743689999987338877774266279875688997632578733770577565443455507899989999
Q ss_pred HHHCCCCHHHHCCC
Q ss_conf 78709888883028
Q gi|254780960|r 283 LYIQGYKKDEIVKS 296 (297)
Q Consensus 283 l~~~g~~~~~~~~~ 296 (297)
++.+|-...++-++
T Consensus 252 ~~~~~~~~~~~~~~ 265 (266)
T COG1877 252 LEALGNEARTLREA 265 (266)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99865267666534
No 168
>PRK05259 consensus
Probab=74.31 E-value=4.4 Score=19.32 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=21.2
Q ss_pred HHHHHHHC--CCEEEEEECCCHH--HHHHHHHHHCCCHHH
Q ss_conf 99999841--9869998167234--223226550864134
Q gi|254780960|r 160 LVHTMKQN--GASTLLVTGGFSI--FARFIAQHLGFDQYY 195 (297)
Q Consensus 160 ~i~~l~~~--g~~v~iisg~~~~--~~~~ia~~lgi~~~~ 195 (297)
..+.++.. .-++++++-|... .++.+++.+|.+..+
T Consensus 148 l~~~i~~~~~~~~~vvVsPD~G~~~ra~~~a~~l~~~~~~ 187 (310)
T PRK05259 148 MARDIKARYDLGNVMVVSPDVGGVVRARALAKRLDAPLAI 187 (310)
T ss_pred HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 1678986389766399914926999999999981996789
No 169
>PRK01132 consensus
Probab=74.08 E-value=5.9 Score=18.51 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=22.3
Q ss_pred HHHHHHHHHCCCEEEEEECCCH--HHHHHHHHHHCCCHHHHHC
Q ss_conf 8999999841986999816723--4223226550864134310
Q gi|254780960|r 158 YELVHTMKQNGASTLLVTGGFS--IFARFIAQHLGFDQYYANR 198 (297)
Q Consensus 158 ~~~i~~l~~~g~~v~iisg~~~--~~~~~ia~~lgi~~~~a~~ 198 (297)
....+.++..... ++++-|.. ..++.+++.+|.+..+...
T Consensus 143 ~~l~~~~~~~~~~-vVVsPD~G~~~rA~~~A~~Lg~~~~~~~K 184 (286)
T PRK01132 143 DSIADYYKNVDID-YVVSPDDGGLERVKSIAKYLGKKAFYIEK 184 (286)
T ss_pred HHHHHHHHHCCCC-EEECCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 8999998733856-12579852889999999981998699975
No 170
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit; InterPro: IPR012721 Members of this eukaryotic family are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT theta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=73.52 E-value=5.9 Score=18.52 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 3389999998419869998167234223226550864
Q gi|254780960|r 156 GGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFD 192 (297)
Q Consensus 156 ~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~ 192 (297)
.+...++...+.|++|++..|.-..++.|..++++|-
T Consensus 277 ~~e~~iK~iad~Gv~VIv~gG~v~d~AlHy~~~Y~im 313 (554)
T TIGR02346 277 QIEALIKAIADSGVKVIVTGGSVGDMALHYVEKYNIM 313 (554)
T ss_pred HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCEE
T ss_conf 9999878998689859994684889999878155826
No 171
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=73.49 E-value=6.1 Score=18.42 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=66.9
Q ss_pred HHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCC-CCHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 211345433899999984198699981672342232265508641343101-0000000000156310521138877532
Q gi|254780960|r 149 KKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRF-IEKDDRLTGQVMEPIIDGTAKSQILLEA 227 (297)
Q Consensus 149 ~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~-~~~~~~~~~~~~~~~~~~~~k~~~~~~l 227 (297)
...++.|.+.+.++.-+..|.++++-|.+.-. |+.+=|.+..+..+ ...++.++..+ + +..--..-.++
T Consensus 100 lkahlypDav~~ik~wk~~g~~vyiYSSGSV~-----AQkL~Fghs~agdL~~lfsGyfDtti-G----~KrE~~SY~kI 169 (229)
T COG4229 100 LKAHLYPDAVQAIKRWKALGMRVYIYSSGSVK-----AQKLFFGHSDAGDLNSLFSGYFDTTI-G----KKRESQSYAKI 169 (229)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCH-----HHHHHHCCCCCCCHHHHHCCEEECCC-C----CCCCCHHHHHH
T ss_conf 04646775999999999749837997278703-----67772245432327766131112144-6----64320369999
Q ss_pred HHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE
Q ss_conf 331037766799997892348899848931898
Q gi|254780960|r 228 IQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF 260 (297)
Q Consensus 228 ~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~ 260 (297)
+...+++..++.+..|..+.+.+-+.+|+-...
T Consensus 170 a~~iGl~p~eilFLSDn~~EL~AA~~vGl~t~l 202 (229)
T COG4229 170 AGDIGLPPAEILFLSDNPEELKAAAGVGLATGL 202 (229)
T ss_pred HHHCCCCCHHEEEECCCHHHHHHHHHCCHHEEE
T ss_conf 986299802247734997998888741613043
No 172
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=72.99 E-value=4.2 Score=19.44 Aligned_cols=40 Identities=18% Similarity=0.131 Sum_probs=25.1
Q ss_pred HHHHHHHHHHCCCEEEEEECCC--HHHHHHHHHHHCCCHHHH
Q ss_conf 3899999984198699981672--342232265508641343
Q gi|254780960|r 157 GYELVHTMKQNGASTLLVTGGF--SIFARFIAQHLGFDQYYA 196 (297)
Q Consensus 157 ~~~~i~~l~~~g~~v~iisg~~--~~~~~~ia~~lgi~~~~a 196 (297)
.....+.++....+.++++-|. ...++.+++.+|.+..+.
T Consensus 142 ~~~~~~~~~~~~~~~vVVsPD~G~~~ra~~~a~~Lg~~~~~~ 183 (286)
T PRK00934 142 MPAIAEYIKEKLVDPLVLAPDKGALERAKEVAEILGCEYDYL 183 (286)
T ss_pred CHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 714589998438887898479748999999999753646589
No 173
>PRK01999 consensus
Probab=71.03 E-value=5.8 Score=18.58 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=26.0
Q ss_pred HHHHHHHHHHC-CCEEEEEECCCH--HHHHHHHHHHCCCHHHHHCC
Q ss_conf 38999999841-986999816723--42232265508641343101
Q gi|254780960|r 157 GYELVHTMKQN-GASTLLVTGGFS--IFARFIAQHLGFDQYYANRF 199 (297)
Q Consensus 157 ~~~~i~~l~~~-g~~v~iisg~~~--~~~~~ia~~lgi~~~~a~~~ 199 (297)
.....+.++.. ..++++++-|.. ..++.+++.+|.+..+....
T Consensus 149 ~~~~~~~~~~~~~~~~vvVsPD~g~~kra~~~A~~Lg~~~~~~~K~ 194 (311)
T PRK01999 149 STVFLPYIRSLKLDNLVIATPDVGGSKRASAYSKYLGVPVVICYKS 194 (311)
T ss_pred CHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 5889999996398760898159049999999998617872331102
No 174
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=70.21 E-value=4.8 Score=19.08 Aligned_cols=84 Identities=17% Similarity=0.274 Sum_probs=52.1
Q ss_pred HHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 21134543389999998419869998167234223226550864134310100000000001563105211388775323
Q gi|254780960|r 149 KKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAI 228 (297)
Q Consensus 149 ~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~ 228 (297)
.....||+..+.++.+... +.+++-|.+....|+++.+.+.-...+-...-..+.. .. .+...++.|
T Consensus 42 ~~v~~RP~l~~FL~~l~~~-yei~i~Ta~~~~YA~~v~~~lDp~~~~~~~~l~R~~c---------~~--~~~~~~KdL- 108 (148)
T smart00577 42 VYVKKRPGVDEFLKRASEL-FELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDEC---------VF--VKGKYVKDL- 108 (148)
T ss_pred EEEEECCCHHHHHHHHHHC-CEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEECCCC---------CE--ECCEEEEEH-
T ss_conf 9999795799999998753-5799994784779999999868788565799975757---------01--688784537-
Q ss_pred HHHCCCCCEEEEEECCC
Q ss_conf 31037766799997892
Q gi|254780960|r 229 QKLQINPEDTIAVGDGN 245 (297)
Q Consensus 229 ~~~~~~~~~v~avGDg~ 245 (297)
..++.++++|+.+=|..
T Consensus 109 ~~l~r~l~~viivDd~~ 125 (148)
T smart00577 109 SLLGRDLSNVIIIDDSP 125 (148)
T ss_pred HHCCCCCCCEEEEECCH
T ss_conf 45399821499998988
No 175
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457; InterPro: IPR006354 These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are all from the Gram-positive (low-GC) bacteria..
Probab=69.63 E-value=3.6 Score=19.86 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=27.0
Q ss_pred HHHHHH--HHHHHHHHCCCCCEEEEEECCCC-HHHHHHHCCC
Q ss_conf 113887--75323310377667999978923-4889984893
Q gi|254780960|r 218 TAKSQI--LLEAIQKLQINPEDTIAVGDGNN-DLDMLRVAGY 256 (297)
Q Consensus 218 ~~k~~~--~~~l~~~~~~~~~~v~avGDg~N-D~pmL~~Agv 256 (297)
..||+. +.+-+++||...++++||||++. |+-|==.||+
T Consensus 178 iGKP~~II~e~A~~~LGt~~eEtlmvGDNY~TDI~AGI~aGi 219 (251)
T TIGR01457 178 IGKPEAIIMEKALKRLGTEKEETLMVGDNYATDILAGIDAGI 219 (251)
T ss_pred EECCCHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHCCC
T ss_conf 717873579989987089702467860770467786253176
No 176
>TIGR02076 pyrH_arch uridylate kinase, putative; InterPro: IPR011818 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the archaeal and spirochete proteins.; GO: 0009041 uridylate kinase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=67.38 E-value=4.1 Score=19.48 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEECC-CH-HHHHHHHHHH
Q ss_conf 4543389999998419869998167-23-4223226550
Q gi|254780960|r 153 YNPGGYELVHTMKQNGASTLLVTGG-FS-IFARFIAQHL 189 (297)
Q Consensus 153 ~~~~~~~~i~~l~~~g~~v~iisg~-~~-~~~~~ia~~l 189 (297)
+.....++.+..+. . -+.|+|| ++ .++.++|..+
T Consensus 95 vP~~~~EA~~~~~~--~-~ivVmGGt~PGhtTDAVAA~l 130 (232)
T TIGR02076 95 VPENFEEALEAMSL--G-KIVVMGGTEPGHTTDAVAALL 130 (232)
T ss_pred CCCCHHHHHHHHHC--C-CEEEECCCCCCCHHHHHHHHH
T ss_conf 98898999999826--9-879866878985289999999
No 177
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family; InterPro: IPR006349 This family of sequences represent 2-phosphoglycolate phosphatase which is limited to the eukaryotic lineage. PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. In mammals, PGP is found in many tissues, notably in red blood cells where P-glycolate is and important activator of the hydrolysis of 2,3-bisphosphoglycerate, a major modifier of the oxygen affinity of hemoglobin. The PGPase enzyme described here is a member of the Haloacid dehalogenase superfamily of hydrolase enzymes. Unlike the bacterial PGP equivalog (IPR006346 from INTERPRO), which is a member of class (subfamily) I, this enzyme is a member of class (subfamily) II . These two enzymes have almost certainly arisen from convergent evolution (although these two ancestors may themselves have diverged from a more distant HAD superfamily progenitor). One of the sequences in the group comes from Chlamydomonas reinhardtii, a photosynthetic alga. The enzyme has been purified and characterised and these data are fully consistent with the assignment of function as a PGPase involved in photorespiration . Another, from Homo sapiens, is supported as a member of the family indirectly. Biochemical characterization of partially purified PGP's from various tissues including red blood cells have been performed while one gene for PGP has been localized to chromosome 16p13.3 . The Homo sapiens sequence maps to chromosome 22. There is indeed a related gene on chromosome 16 (and it is expressed, since EST's are found) which shows 46 0dentity and 59603b08ositives by BLAST2 (E=1e-66). Presumably, these two genes are isoforms and have the same catalytic function while being expressed in different tissues and may be differently regulated. The sequence from Caenorhabditis elegans, is only supported by sequence similarity. This family is closely related to a family of bacterial sequences including the Escherichia coli NagD and Bacillus subtilus AraL genes which are characterised by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The Chlamydomonas reinhardtii PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this family have been annotated as pNPPases due to this association.; GO: 0016791 phosphoric monoester hydrolase activity, 0008152 metabolic process.
Probab=65.31 E-value=4.7 Score=19.15 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 105211388775323310377667999978923
Q gi|254780960|r 214 IIDGTAKSQILLEAIQKLQINPEDTIAVGDGNN 246 (297)
Q Consensus 214 ~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~N 246 (297)
++-+.-..-.++-+.+++++++.+++||||=.|
T Consensus 207 lvVGKPs~~mf~~I~~~~~i~P~r~~MvGDRl~ 239 (288)
T TIGR01452 207 LVVGKPSDYMFEYIKEKLSIDPARTLMVGDRLE 239 (288)
T ss_pred EEECCCCHHHHHHHHHHHCCCCCCEEEECCCCH
T ss_conf 365589847899988751788012677517720
No 178
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein; InterPro: IPR014337 Members of this entry are the extracellular solute-binding proteins of ABC transporters and they closely resemble amino acid transporters. The member from Sinorhizobium meliloti (Rhizobium meliloti) is involved in ectoine uptake, both for osmoprotection and for catabolism. All other members of the seed alignment are found associated with ectoine catabolic genes..
Probab=63.63 E-value=9.8 Score=17.16 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=20.8
Q ss_pred HHHHHHHCCCCCEEEEEECCCCHHHHHHH--CCCEEE
Q ss_conf 53233103776679999789234889984--893189
Q gi|254780960|r 225 LEAIQKLQINPEDTIAVGDGNNDLDMLRV--AGYGVA 259 (297)
Q Consensus 225 ~~l~~~~~~~~~~v~avGDg~ND~pmL~~--AgvGVA 259 (297)
..++..-|+.-++++.|=|+..-++|++. +|+-++
T Consensus 157 ~~~ar~~GVk~eqi~~vPd~~~~l~~vq~~RaDay~~ 193 (285)
T TIGR02995 157 VKYAREAGVKEEQIVVVPDTASALKAVQDKRADAYAA 193 (285)
T ss_pred HHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCEECC
T ss_conf 8999865898660788248716788877403422003
No 179
>TIGR01188 drrA daunorubicin resistance ABC transporter, ATP-binding protein; InterPro: IPR005894 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. In other words it functions as an ATP dependent antiporter. .
Probab=62.68 E-value=4.9 Score=19.04 Aligned_cols=127 Identities=13% Similarity=0.188 Sum_probs=83.0
Q ss_pred CCCCEEECCC--CCCCCCEEEEC---CCEEEEECCCCHHHHHHHHCCC-----------HHHHHHHHHHHCCCCCHHHHH
Q ss_conf 6863462145--55534448722---7502652452002788741223-----------277888765202441001234
Q gi|254780960|r 66 KPIDLIIHRH--ENRRKNLLIAD---MDSTMIEQECIDELADLIGIKE-----------KVSLITARAMNGEIPFQDSLR 129 (297)
Q Consensus 66 ~~~d~~~~~~--~~~~~~l~~~d---~d~tli~~~~l~~~a~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 129 (297)
.|+|+.-++. ..|+.=-++|. +|.-|..-|.+...+..+|... +.-++++.+.+.--.|..-++
T Consensus 55 ~GYDvvreP~kl~VRr~IG~v~Q~~s~D~~LTg~ENl~m~g~LyGlp~~~~~~Ra~ELLe~~~L~~aa~r~V~tySGGMr 134 (343)
T TIGR01188 55 AGYDVVREPRKLKVRRRIGIVPQYASVDEDLTGRENLVMMGRLYGLPKKEAEERAEELLELFELTEAADRKVKTYSGGMR 134 (343)
T ss_pred EEEECCCCHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCE
T ss_conf 83210236304032113204468555564577475444533334896899998888876230014662543322677112
Q ss_pred HHHHHHHHHH---HHHHH--HHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 5568764200---45689--887421134543389999998419869998167234223226550864
Q gi|254780960|r 130 ERISLFKGTS---TKIID--SLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFD 192 (297)
Q Consensus 130 ~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~ 192 (297)
+|+.+....- ...+. --.+....-+..+++.|+.+++..-.++++|.=+.+=|+.++.+.+|-
T Consensus 135 RRL~iA~sli~~P~vLFLDEPT~GLDP~tR~~iWd~i~~lk~~~g~TilLTThYmeEAd~L~DriaiI 202 (343)
T TIGR01188 135 RRLEIAASLIHQPEVLFLDEPTTGLDPRTRRAIWDYIEALKKEEGVTILLTTHYMEEADKLCDRIAII 202 (343)
T ss_pred EHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEE
T ss_conf 14454311103882565148876888866999999999987407969997437869998236887886
No 180
>TIGR00761 argB acetylglutamate kinase; InterPro: IPR004662 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) This entry describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts as well as some, as yet, uncharacterised proteins.; GO: 0003991 acetylglutamate kinase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm.
Probab=61.13 E-value=11 Score=16.88 Aligned_cols=30 Identities=7% Similarity=0.038 Sum_probs=16.3
Q ss_pred HHCCCCCCHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 211345433899999984198699981672
Q gi|254780960|r 149 KKITYNPGGYELVHTMKQNGASTLLVTGGF 178 (297)
Q Consensus 149 ~~~~~~~~~~~~i~~l~~~g~~v~iisg~~ 178 (297)
+--.+.+.-.+.++.|-+.|+-+++=|=+.
T Consensus 135 ~VG~~~~Vn~~~~~~Ll~~G~~PVi~sla~ 164 (254)
T TIGR00761 135 YVGEIKKVNKALLEALLKAGIIPVIASLAL 164 (254)
T ss_pred CEEEECCCCHHHHHHHHHCCCCCEECCCCC
T ss_conf 412313278899999996498517716658
No 181
>pfam05761 5_nucleotid 5' nucleotidase family. This family of eukaryotic proteins includes 5' nucleotidase enzymes, such as purine 5'-nucleotidase EC:3.1.3.5.
Probab=52.94 E-value=15 Score=16.04 Aligned_cols=98 Identities=12% Similarity=0.042 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHH-CC-----CHH----------------HHHCCCC---H--HH
Q ss_conf 34543389999998419869998167234223226550-86-----413----------------4310100---0--00
Q gi|254780960|r 152 TYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHL-GF-----DQY----------------YANRFIE---K--DD 204 (297)
Q Consensus 152 ~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~l-gi-----~~~----------------~a~~~~~---~--~~ 204 (297)
...|.....+..+++.|-++.++|.++..++..+...+ |- ..+ +....++ + .+
T Consensus 183 ~kdp~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~~~FDvVIv~A~KP~FF~~~~pfr~vd~~~g 262 (448)
T pfam05761 183 IKDPELPPALSRLRESGKKLFLLTNSPWDYTDKGMSYLFDGFLPEGPSWRDLFDVVIVGARKPLFFNDGTPLREVDTETG 262 (448)
T ss_pred HCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCEEEECCCCCCCCCCCCCEEEEECCCC
T ss_conf 35930889999999719749998189557899989875288677887867653178865888865257982388867888
Q ss_pred CCC-C---CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC-CHHHHHH
Q ss_conf 000-0---0156310521138877532331037766799997892-3488998
Q gi|254780960|r 205 RLT-G---QVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGN-NDLDMLR 252 (297)
Q Consensus 205 ~~~-~---~~~~~~~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~-ND~pmL~ 252 (297)
... + ......+...+. ...+.+-++..+.+|.-|||.+ .|+--.|
T Consensus 263 ~l~~~~~~~l~~g~vY~gG~---~~~l~~l~g~~g~~VLY~GDHiy~Di~~~k 312 (448)
T pfam05761 263 LLRITKVGPLEKGKVYSGGS---LDLFERLLGWRGSRVLYVGDHIYGDILKSK 312 (448)
T ss_pred CEECCCCCCCCCCCCCCCCC---HHHHHHHHCCCCCCEEEECCCCCHHHHHHH
T ss_conf 34045455556787556778---999999858999847996685207677788
No 182
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase; InterPro: IPR006551 These proteins catalyse the dephosphorylation of DNA 3'-phosphates. It is believed that this activity is important for the repair of single-strand breaks in DNA caused by radiation or oxidative damage. This region is often , , but not always linked to a DNA 5'-kinase domain , . As is common in this superfamily, DNA 3-phosphatase is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the usual site which may indicate a slightly different fold in this region..
Probab=51.09 E-value=8.9 Score=17.43 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.0
Q ss_pred CCCCCEEEECCCEEEEECCC
Q ss_conf 55344487227502652452
Q gi|254780960|r 77 NRRKNLLIADMDSTMIEQEC 96 (297)
Q Consensus 77 ~~~~~l~~~d~d~tli~~~~ 96 (297)
.+...+++||+|+|||..++
T Consensus 16 ehGln~~~FDLDgTLI~t~S 35 (239)
T TIGR01664 16 EHGLNVAAFDLDGTLIKTRS 35 (239)
T ss_pred CCCCEEEEEECCCCEECCCC
T ss_conf 45546889705643205578
No 183
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=49.08 E-value=17 Score=15.67 Aligned_cols=88 Identities=20% Similarity=0.269 Sum_probs=51.7
Q ss_pred HHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHH-----HHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHH-H
Q ss_conf 211345433899999984198699981672342-----2322655086413431010000000000156310521138-8
Q gi|254780960|r 149 KKITYNPGGYELVHTMKQNGASTLLVTGGFSIF-----ARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKS-Q 222 (297)
Q Consensus 149 ~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~-----~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~-~ 222 (297)
......||+.+.++....+|..+..||.--... .+.+ ++.|+..+.-..+.+. +..|. +
T Consensus 119 ~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nL-k~~g~~~~~~~~~llk--------------k~~k~Ke 183 (274)
T COG2503 119 KKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENL-KSEGLPQVLESHLLLK--------------KDKKSKE 183 (274)
T ss_pred HHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHCCHHHHHH-HHHCCCCCCCCEEEEE--------------ECCCCHH
T ss_conf 022658558999999985596799983654120011058889-8707654465406886--------------0787489
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHC
Q ss_conf 77532331037766799997892348899848
Q gi|254780960|r 223 ILLEAIQKLQINPEDTIAVGDGNNDLDMLRVA 254 (297)
Q Consensus 223 ~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~A 254 (297)
.-+..+++ ..+.|+-|||..+|..-....
T Consensus 184 ~R~~~v~k---~~~iVm~vGDNl~DF~d~~~k 212 (274)
T COG2503 184 VRRQAVEK---DYKIVMLVGDNLDDFGDNAYK 212 (274)
T ss_pred HHHHHHHH---CCCEEEEECCCHHHCCCHHHH
T ss_conf 99999861---210677745754420234330
No 184
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=45.84 E-value=16 Score=15.93 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEEC-CCHHHHHHHHHHHCCCHHH
Q ss_conf 454338999999841986999816-7234223226550864134
Q gi|254780960|r 153 YNPGGYELVHTMKQNGASTLLVTG-GFSIFARFIAQHLGFDQYY 195 (297)
Q Consensus 153 ~~~~~~~~i~~l~~~g~~v~iisg-~~~~~~~~ia~~lgi~~~~ 195 (297)
..++.++.++.|+..|+|-.++.+ +..++.+..++++|.+-+.
T Consensus 168 tm~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~a~~iGAD~~~ 211 (227)
T COG5012 168 TMIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDWADKIGADAYA 211 (227)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCCC
T ss_conf 79979999999997688547488526862468999971877567
No 185
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=42.01 E-value=16 Score=15.83 Aligned_cols=80 Identities=18% Similarity=0.112 Sum_probs=36.7
Q ss_pred HHHCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 42113454338999999841986999816723422322655086413431010000000000156310521138877532
Q gi|254780960|r 148 EKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEA 227 (297)
Q Consensus 148 ~~~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l 227 (297)
..---++.--.++++.|++.-...+.| |-+.+..+|+.- +++.+...+ +.+.-....++++
T Consensus 228 aDGVAVk~vG~~TF~LC~~YvDd~v~V--dtD~vCaAiKD~------------F~dtRav~E-----PaGALalAGLK~Y 288 (508)
T TIGR01124 228 ADGVAVKEVGDETFRLCQQYVDDIVRV--DTDEVCAAIKDL------------FEDTRAVLE-----PAGALALAGLKKY 288 (508)
T ss_pred ECCEEEHHHHHHHHHHHHHHCCCEEEE--CCHHHHHHHHHH------------HHCHHHHCC-----HHHHHHHHHHHHH
T ss_conf 267354004344589999744554862--644554455533------------222122105-----0267899999999
Q ss_pred HHHHCCCCCEEEEEECCCC
Q ss_conf 3310377667999978923
Q gi|254780960|r 228 IQKLQINPEDTIAVGDGNN 246 (297)
Q Consensus 228 ~~~~~~~~~~v~avGDg~N 246 (297)
+++.++..+.-+++-=|.|
T Consensus 289 va~~g~~~~~Lvai~sGAN 307 (508)
T TIGR01124 289 VAKHGIEGQTLVAITSGAN 307 (508)
T ss_pred HHHCCCCCCEEEEEECCCC
T ss_conf 9954899864688713675
No 186
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase; InterPro: IPR013446 Glucose-1-phosphate cytidylyltransferases, also known as CDP-glucose pyrophosphorylase, are the product of the rfbF gene and produce CDP-D-glucose..
Probab=38.70 E-value=22 Score=15.06 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=9.6
Q ss_pred HHHHHCCCCCEEEEEECCCCHHH
Q ss_conf 23310377667999978923488
Q gi|254780960|r 227 AIQKLQINPEDTIAVGDGNNDLD 249 (297)
Q Consensus 227 l~~~~~~~~~~v~avGDg~ND~p 249 (297)
+...++.+..-|.-+|||+.|+.
T Consensus 113 v~~~~~~d~~Fc~TYGDGv~~~~ 135 (256)
T TIGR02623 113 VREYLEDDEAFCLTYGDGVADID 135 (256)
T ss_pred HHHHHCCCCCEEEEECCCCCCCC
T ss_conf 99984378768987158503325
No 187
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=37.47 E-value=13 Score=16.36 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECC-----------CHHHHHHHHHHHCCC
Q ss_conf 134543389999998419869998167-----------234223226550864
Q gi|254780960|r 151 ITYNPGGYELVHTMKQNGASTLLVTGG-----------FSIFARFIAQHLGFD 192 (297)
Q Consensus 151 ~~~~~~~~~~i~~l~~~g~~v~iisg~-----------~~~~~~~ia~~lgi~ 192 (297)
..++.--.+.+..+-+.|+-+++-+=+ ....+.++|..++-+
T Consensus 144 G~V~~Vd~~~I~~lL~~g~IpVIspig~~~~G~~~NvnaD~~A~~iA~aL~A~ 196 (284)
T CHL00202 144 GEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAE 196 (284)
T ss_pred CCCEEECHHHHHHHHHCCCEEEEECCEECCCCCEEEECHHHHHHHHHHHHCCC
T ss_conf 44123267999999708975998044067999989509999999999986419
No 188
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=36.13 E-value=27 Score=14.43 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 543389999998419869998167234223226550864
Q gi|254780960|r 154 NPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFD 192 (297)
Q Consensus 154 ~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~ 192 (297)
....++.++.+.+.|.+++++.++....+.+.-.+.|+.
T Consensus 116 ~~~l~~~v~~I~~~g~nVVl~~k~I~d~A~~~l~k~gI~ 154 (261)
T cd03334 116 KEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGIT 154 (261)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCE
T ss_conf 999999999999609999998897798999999987996
No 189
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=35.01 E-value=29 Score=14.32 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=17.0
Q ss_pred HHHHHHHHC--CCEEEEEECCC--HHHHHHHHHHHC
Q ss_conf 999999841--98699981672--342232265508
Q gi|254780960|r 159 ELVHTMKQN--GASTLLVTGGF--SIFARFIAQHLG 190 (297)
Q Consensus 159 ~~i~~l~~~--g~~v~iisg~~--~~~~~~ia~~lg 190 (297)
...+.++.. .-+++++|-|. ...++.+++.+|
T Consensus 136 ~l~~~i~~~~~~~~~vvvsPD~Ga~~ra~~~a~~Lg 171 (304)
T PRK03092 136 LLADYIRSNYDLDNMTVVSPDAGRVRVAEKWADRLG 171 (304)
T ss_pred HHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf 999999851887661898069746899999999867
No 190
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=33.12 E-value=31 Score=14.13 Aligned_cols=10 Identities=10% Similarity=-0.037 Sum_probs=4.8
Q ss_pred EEEECCCHHH
Q ss_conf 8995698327
Q gi|254780960|r 272 IRIDHSDLEA 281 (297)
Q Consensus 272 ~~~~~~dl~~ 281 (297)
++.-+.|-.+
T Consensus 392 IvYVSCnPaT 401 (440)
T PRK13168 392 IVYVSCNPAT 401 (440)
T ss_pred EEEECCCHHH
T ss_conf 9999389899
No 191
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family; InterPro: IPR006381 This small group of proteins is a member of the IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (IPR005834 from INTERPRO). Nothing is known about the function of this group of proteins, however given that the other known enzymes of the IIB subfamily are sugar phosphatases or mutases, it would not be unreasonable to predict that these also acts on sugars.; GO: 0050531 mannosyl-3-phosphoglycerate phosphatase activity, 0008152 metabolic process, 0005737 cytoplasm.
Probab=31.57 E-value=28 Score=14.34 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHCCC--CCEEEEEECCCCHHHHHHHCCCEEEEC
Q ss_conf 211388775323310377--667999978923488998489318987
Q gi|254780960|r 217 GTAKSQILLEAIQKLQIN--PEDTIAVGDGNNDLDMLRVAGYGVAFH 261 (297)
Q Consensus 217 ~~~k~~~~~~l~~~~~~~--~~~v~avGDg~ND~pmL~~AgvGVA~~ 261 (297)
...|......+....... ...+...||+.||.|++...+..+-..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (262)
T TIGR01486 181 GSDKGKAVNALKALYLQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVP 227 (262)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 01101345666543101222210110244310012232200000002
No 192
>TIGR02104 pulA_typeI pullulanase, type I; InterPro: IPR011840 Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the entries in IPR011838 from INTERPRO and IPR011839 from INTERPRO but having a different domain architecture with shorter sequences. Members are called type I pullulanases ..
Probab=31.35 E-value=33 Score=13.95 Aligned_cols=18 Identities=11% Similarity=0.412 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHCCCEEEE
Q ss_conf 338999999841986999
Q gi|254780960|r 156 GGYELVHTMKQNGASTLL 173 (297)
Q Consensus 156 ~~~~~i~~l~~~g~~v~i 173 (297)
+.+++|++|+++|++|+|
T Consensus 250 ELKqmi~~lH~~GirVIm 267 (655)
T TIGR02104 250 ELKQMIQALHENGIRVIM 267 (655)
T ss_pred HHHHHHHHHHHCCCEEEE
T ss_conf 888999999866887998
No 193
>PRK05279 N-acetylglutamate synthase; Validated
Probab=31.13 E-value=25 Score=14.66 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=7.1
Q ss_pred HHHHHHHHHHCCCEEEE
Q ss_conf 38999999841986999
Q gi|254780960|r 157 GYELVHTMKQNGASTLL 173 (297)
Q Consensus 157 ~~~~i~~l~~~g~~v~i 173 (297)
-.+.++.+-+.|.-+++
T Consensus 157 d~~~I~~~L~~g~Ipvi 173 (441)
T PRK05279 157 DTEAIRRQLDNGAIVLL 173 (441)
T ss_pred CHHHHHHHHHCCCEEEE
T ss_conf 38999999978982998
No 194
>pfam10113 Fibrillarin_2 Fibrillarin-like archaeal protein. Members of this family of proteins include archaeal fibrillarin homologs.
Probab=30.96 E-value=33 Score=13.91 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=7.2
Q ss_pred HHHHHCCCCCEEEEEECCCCH
Q ss_conf 233103776679999789234
Q gi|254780960|r 227 AIQKLQINPEDTIAVGDGNND 247 (297)
Q Consensus 227 l~~~~~~~~~~v~avGDg~ND 247 (297)
++++++...+-+..+|||+-|
T Consensus 214 ~A~k~gkGvEaI~hiGDGyDd 234 (505)
T pfam10113 214 TARKYGKGVEAIFHVGDGYDD 234 (505)
T ss_pred HHHHHCCCCEEEEEECCCHHH
T ss_conf 999848783489971477488
No 195
>TIGR01460 HAD-SF-IIA HAD-superfamily hydrolase, subfamily IIA; InterPro: IPR006357 These sequences form one of the structural subclass of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs . The classes are defined based on the location and the observed or predicted fold of a so-called "capping domain" , or the absence of such a domain. Class I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Class II consists of sequences in which the capping domain is found between the second and third motifs. Class III sequences have no capping domain in either of these positions. The Class IIA capping domain is predicted to consist of a mixed alpha-beta fold with the basic pattern: Helix-Helix-Helix-Sheet-Helix-Loop-Sheet-Helix-Sheet-Helix. Presently, this subfamily covers the eukaryotic phosphoglycolate phosphatase, as well as four further subfamilies covering closely related sequences in eukaryotes, in Gram-positive bacteria and in Gram-negative bacteria. The Escherichia coli NagD gene and the Bacillus subtilis AraL gene are members of this subfamily but are not members of the any of the presently defined equivalogs within it. NagD is part of the NAG operon responsible for N-acetylglucosamine metabolism . Genes from several organisms have been annotated as NagD, or NagD-like. However, without data on the presence of other members of this pathway, (such as in the case of Yersinia pestis) these assignments should not be given great weight. The AraL gene is similar and is part of the L-arabinose operon . A gene from Halobacterium has been annotated as AraL, but no other Ara operon genes have been annotated. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant. The structure of NagD from Escherichia coli K12 has been reported and its activity against various substrates determined. It has high specificity for nucleotide monophosphates, and in particular UMP and GMP. In the context of its occurrence in the NAG operon, it may well be involved in the recycling of cell wall metabolites . ; GO: 0016787 hydrolase activity, 0008152 metabolic process.
Probab=30.82 E-value=34 Score=13.90 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=15.9
Q ss_pred CCCEEEEEECCC-CHHHHHHHCCCE
Q ss_conf 766799997892-348899848931
Q gi|254780960|r 234 NPEDTIAVGDGN-NDLDMLRVAGYG 257 (297)
Q Consensus 234 ~~~~v~avGDg~-ND~pmL~~AgvG 257 (297)
+-+.|+||||+. .|+..=+.+|+-
T Consensus 273 pf~~~~mvGD~l~tD~~~A~~~G~~ 297 (304)
T TIGR01460 273 PFERVLMVGDNLRTDVLGAKNAGFD 297 (304)
T ss_pred CCEEEEEECCCCHHHHHHHHHCCCC
T ss_conf 4106878708832334778744500
No 196
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=30.06 E-value=35 Score=13.82 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=4.9
Q ss_pred ECCCHHHHHHHHHH
Q ss_conf 16723422322655
Q gi|254780960|r 175 TGGFSIFARFIAQH 188 (297)
Q Consensus 175 sg~~~~~~~~ia~~ 188 (297)
.|+....+++++.+
T Consensus 49 NGGSaa~A~Hfa~e 62 (196)
T PRK10886 49 NGTSAANAQHFAAS 62 (196)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 84748899999999
No 197
>KOG2630 consensus
Probab=30.00 E-value=35 Score=13.81 Aligned_cols=101 Identities=11% Similarity=0.078 Sum_probs=65.8
Q ss_pred HCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCH-HHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 11345433899999984198699981672342232265508641-34310100000000001563105211388775323
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ-YYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAI 228 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~-~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~ 228 (297)
..++.+.+...++.-+..|+++++-|.|.......+ +.+ ..++..+.-++.++..+. ...--+.-..+.
T Consensus 121 k~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKll-----fg~s~~gdl~~y~~gyfDt~iG-----~K~e~~sy~~I~ 190 (254)
T KOG2630 121 KAHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLL-----FGYSDAGDLRKYISGYFDTTIG-----LKVESQSYKKIG 190 (254)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHH-----HCCCCCCHHHHHHHHHHHCCCC-----CEEHHHHHHHHH
T ss_conf 355651137899998626846999768739999998-----7056741178876422003336-----530447999999
Q ss_pred HHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE
Q ss_conf 31037766799997892348899848931898
Q gi|254780960|r 229 QKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF 260 (297)
Q Consensus 229 ~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~ 260 (297)
+..+.+..++.+.-|-.+-+.+.+.||+-..+
T Consensus 191 ~~Ig~s~~eiLfLTd~~~Ea~aa~~aGl~a~l 222 (254)
T KOG2630 191 HLIGKSPREILFLTDVPREAAAARKAGLQAGL 222 (254)
T ss_pred HHHCCCHHHEEEECCCHHHHHHHHHCCCCEEE
T ss_conf 98389705447730586889998852601001
No 198
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=29.98 E-value=33 Score=13.92 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=26.3
Q ss_pred HHHHHHHHHCCCEEEEEECCC--HHHHHHHHHHHCCCHHHHHC
Q ss_conf 899999984198699981672--34223226550864134310
Q gi|254780960|r 158 YELVHTMKQNGASTLLVTGGF--SIFARFIAQHLGFDQYYANR 198 (297)
Q Consensus 158 ~~~i~~l~~~g~~v~iisg~~--~~~~~~ia~~lgi~~~~a~~ 198 (297)
....+.++..--+.++++-|. ...++.+++.+|.+..+...
T Consensus 149 ~~l~~~i~~~~~~~vvVsPD~G~~~ra~~~a~~lg~~~~~~~K 191 (301)
T PRK07199 149 PAIAAWIRAHVPKPLLIGPDSESEQWVSAVAGRAGAPHAVLRK 191 (301)
T ss_pred HHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 8789999851877536788877799999999865998799998
No 199
>PRK02039 consensus
Probab=28.83 E-value=36 Score=13.69 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=22.4
Q ss_pred HHHHHHHHCC-CEEEEEECCCH--HHHHHHHHHHCCCHHH
Q ss_conf 9999998419-86999816723--4223226550864134
Q gi|254780960|r 159 ELVHTMKQNG-ASTLLVTGGFS--IFARFIAQHLGFDQYY 195 (297)
Q Consensus 159 ~~i~~l~~~g-~~v~iisg~~~--~~~~~ia~~lgi~~~~ 195 (297)
..++.++..+ -+.++||-|.. ..++.+++.+|.+..+
T Consensus 153 ~~~~~~~~~~~~~~vvVsPD~G~~~ra~~~a~~L~~~~~~ 192 (316)
T PRK02039 153 ILLGDLRKQNYSDLLVVSPDVGGVVRARALAKQLNCDLAI 192 (316)
T ss_pred HHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 8889998617787389846940889999999982999799
No 200
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458; InterPro: IPR006355 These sequences are all members of the IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. .
Probab=28.78 E-value=36 Score=13.68 Aligned_cols=32 Identities=25% Similarity=0.554 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 05211388775323310377667999978923
Q gi|254780960|r 215 IDGTAKSQILLEAIQKLQINPEDTIAVGDGNN 246 (297)
Q Consensus 215 ~~~~~k~~~~~~l~~~~~~~~~~v~avGDg~N 246 (297)
+-+.-.+...++-....|...++.+||||-.-
T Consensus 177 vvGKPs~~fF~~al~a~G~epeeaVMiGDD~~ 208 (258)
T TIGR01458 177 VVGKPSKEFFKEALRALGVEPEEAVMIGDDLV 208 (258)
T ss_pred EECCCCHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 84188858998886625888102688647345
No 201
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=26.06 E-value=41 Score=13.39 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=69.2
Q ss_pred HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCC-CCCCCCCHH-------------HHH-
Q ss_conf 38999999841986999816723422322655086413431010000000000-156310521-------------138-
Q gi|254780960|r 157 GYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQ-VMEPIIDGT-------------AKS- 221 (297)
Q Consensus 157 ~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~-~~~~~~~~~-------------~k~- 221 (297)
...-|+.-+++..+++.-|+....+++.+.+++||+....+++-+.+....-+ +.....+.. .|.
T Consensus 246 r~~ev~~aHrA~lN~v~CSks~~nlA~~m~~~YGIPyf~~SFyGi~Dt~~aLr~~A~~fgd~~l~~RtE~li~~E~~~~~ 325 (470)
T TIGR01283 246 RYAEVQTAHRAKLNMVQCSKSMINLARKMEEKYGIPYFEVSFYGIEDTSKALRDIAELFGDEELLKRTEELIAEEEAKIR 325 (470)
T ss_pred CHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 78998404115543357523678899999964689758721410888999999999763988799999999999999999
Q ss_pred HHHHHHHHHHCCCCCEEEEE-EC---CCCHHHHHHHCCCEEEE-C---C----CHHHHHHCC---EEEECCCHHHHHHHC
Q ss_conf 87753233103776679999-78---92348899848931898-7---9----578998589---899569832767870
Q gi|254780960|r 222 QILLEAIQKLQINPEDTIAV-GD---GNNDLDMLRVAGYGVAF-H---A----KPALAKQAK---IRIDHSDLEALLYIQ 286 (297)
Q Consensus 222 ~~~~~l~~~~~~~~~~v~av-GD---g~ND~pmL~~AgvGVA~-~---a----~~~v~~~Ad---~~~~~~dl~~~l~~~ 286 (297)
..+.. .+-...++.++-| |= +..=+.+|+.=|+-|=| + + +...++... +.++..+=+.|+-+|
T Consensus 326 ~~l~~--yR~~L~GKkaaiY~GGa~KswSlv~Al~dLGMeVV~~GTqkg~~EDy~~I~e~~~~~~~m~Dd~~p~~L~~~~ 403 (470)
T TIGR01283 326 PELEP--YRERLKGKKAAIYTGGAVKSWSLVSALQDLGMEVVATGTQKGTEEDYERIRELMGEGTVMLDDANPRELLKLL 403 (470)
T ss_pred HHHHH--HHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHH
T ss_conf 99999--8997349889986586478999998884579179998300798889999999707996786258878999999
Q ss_pred CCC
Q ss_conf 988
Q gi|254780960|r 287 GYK 289 (297)
Q Consensus 287 g~~ 289 (297)
-=.
T Consensus 404 ~~~ 406 (470)
T TIGR01283 404 LEY 406 (470)
T ss_pred HHH
T ss_conf 872
No 202
>pfam05343 Peptidase_M42 M42 glutamyl aminopeptidase. These peptidases are found in Archaea and Bacteria. The example in Lactococcus lactis, PepA, aids growth on milk. Pyrococcus horikoshii contain a thermostable de-blocking aminopeptidase member of this family used commercially for N-terminal protein sequencing.
Probab=25.19 E-value=42 Score=13.29 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCEEEE
Q ss_conf 1138877532331037766799997892348899848931898
Q gi|254780960|r 218 TAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF 260 (297)
Q Consensus 218 ~~k~~~~~~l~~~~~~~~~~v~avGDg~ND~pmL~~AgvGVA~ 260 (297)
..-.+.+..++++.+|+....++.| |-+|+.++..++.||.-
T Consensus 223 ~~l~~~l~~~A~~~~Ip~Q~~~~~~-~gTDa~~~~~~~~Gi~~ 264 (292)
T pfam05343 223 PKLRKFLLELAKKNNIPYQVEVYPG-GGTDAGAAHLTGGGVPT 264 (292)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCC-CCCHHHHHHHHCCCCCE
T ss_conf 8999999999987699728985688-77669999983899878
No 203
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein; InterPro: IPR004494 MauM ferredoxin-type protein is involved in methylamine utilization. NapG ferredoxin-type protein is associated with nitrate reductase activity.; GO: 0006118 electron transport.
Probab=24.68 E-value=34 Score=13.89 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=11.0
Q ss_pred EECCCCHHHHHHHCCCEEEE
Q ss_conf 97892348899848931898
Q gi|254780960|r 241 VGDGNNDLDMLRVAGYGVAF 260 (297)
Q Consensus 241 vGDg~ND~pmL~~AgvGVA~ 260 (297)
+|==..|++-++.||+|||+
T Consensus 107 TGAL~~~l~~Ir~ADMGVAV 126 (213)
T TIGR00397 107 TGALDPLLTDIRKADMGVAV 126 (213)
T ss_pred CCCCCCCHHHHHHHCCCEEE
T ss_conf 65454110124541471278
No 204
>pfam05872 DUF853 Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. One member from Brucella melitensis is thought to be an ATPase.
Probab=24.16 E-value=44 Score=13.17 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHC
Q ss_conf 433899999984198699981672342232265508
Q gi|254780960|r 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLG 190 (297)
Q Consensus 155 ~~~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lg 190 (297)
+.+...++..+.+|+-+++||..+..+-+.+..++|
T Consensus 279 ~kIEqvVRLIRSKGVGVyFvTQnP~DiPd~VL~QLG 314 (504)
T pfam05872 279 EKVEQVVRLIRSKGVGVYFVTQNPLDLPDTVLAQLG 314 (504)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 999999987530673599972787647088999887
No 205
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=24.09 E-value=18 Score=15.53 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=18.4
Q ss_pred HHHHHHCCCEEEECCCHHHHHHCCEEEECC
Q ss_conf 889984893189879578998589899569
Q gi|254780960|r 248 LDMLRVAGYGVAFHAKPALAKQAKIRIDHS 277 (297)
Q Consensus 248 ~pmL~~AgvGVA~~a~~~v~~~Ad~~~~~~ 277 (297)
..|+|..|+|||.++ .++.+.|.+++..
T Consensus 115 ~C~~k~iDLGIAlGs--A~~~a~dl~iDnR 142 (182)
T COG4739 115 NCMFKYIDLGIALGS--AAKVAKDLCIDNR 142 (182)
T ss_pred CHHHHHHHHHHHHHH--HHHHHHHHCCCHH
T ss_conf 043344333155507--8888877502135
No 206
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=23.39 E-value=46 Score=13.07 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=49.8
Q ss_pred HHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHHCC------
Q ss_conf 999984198699981672342232265508641343101000000000015631052-1138877532331037------
Q gi|254780960|r 161 VHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDG-TAKSQILLEAIQKLQI------ 233 (297)
Q Consensus 161 i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~-~~k~~~~~~l~~~~~~------ 233 (297)
+..++++|++..+-|-+..++.++.+-... +++- |.+.....+. ..+|+.+.++....+.
T Consensus 295 L~aI~~AGlrLGiSTH~~~El~rAl~~~Ps---YIAL----------G~IfpT~tK~Mp~~PQGL~rL~~y~~l~~~~p~ 361 (439)
T PRK12290 295 LAALTDAGIRLGLSTHGYYELLRIVQIQPS---YIAL----------GHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPY 361 (439)
T ss_pred HHHHHHCCCEEEECCCCHHHHHHHHHCCCC---EEEE----------CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 999986796576516999999999744998---4875----------573675545799887249999999998513554
Q ss_pred ---CCCEEEEE-ECCCCHHHHHHHCCCE-EEE-CC
Q ss_conf ---76679999-7892348899848931-898-79
Q gi|254780960|r 234 ---NPEDTIAV-GDGNNDLDMLRVAGYG-VAF-HA 262 (297)
Q Consensus 234 ---~~~~v~av-GDg~ND~pmL~~AgvG-VA~-~a 262 (297)
..=-++|+ |=+..-+|.....|+| ||+ .|
T Consensus 362 ~~~~~~PtVAIGGI~~~r~~~V~~tGV~siAVV~A 396 (439)
T PRK12290 362 TEQTGFPTVAIGGIDQSNAEQVWQCGVSSLAVVRA 396 (439)
T ss_pred CCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEH
T ss_conf 34579983889771688889999819981798863
No 207
>TIGR01493 HAD-SF-IA-v2 HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); InterPro: IPR006388 This group of sequences represent part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs . The subfamilies are defined based on the location and the observed or predicted fold of a so-called capping domain , or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single HMM is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an apparent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where s refers to a small amino acid and h to a hydrophobic one. All three of these variants are found in subfamily IA. ; GO: 0019120 hydrolase activity acting on acid halide bonds in C-halide compounds.
Probab=22.79 E-value=47 Score=13.00 Aligned_cols=145 Identities=12% Similarity=0.147 Sum_probs=73.8
Q ss_pred EEECCCEEEEECCCCHHHHHHHHCCCHH----------HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8722750265245200278874122327----------788876520244100123455687642004568988742113
Q gi|254780960|r 83 LIADMDSTMIEQECIDELADLIGIKEKV----------SLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKIT 152 (297)
Q Consensus 83 ~~~d~d~tli~~~~l~~~a~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (297)
++||+=|||++.+.-.-+........-. ....+..|.....|.+........+. ..-+.... ...+
T Consensus 2 ~vFDv~GTL~D~~v~~~~~~~~~~~~A~s~~~~~~~~~~~~~~s~~~~~~~f~~~~~~~~~~~G---l~~L~~a~-~~L~ 77 (162)
T TIGR01493 2 LVFDVYGTLVDVHVRACLAAIAPAGDATSDLLRAKQLEYSWRRSLMGDRRAFEEALRYVADRLG---LDRLADAY-KNLP 77 (162)
T ss_pred EEECCCCCEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHH-HCCC
T ss_conf 2540010000088899986246331156753037899999999998778758999998740048---51356655-4179
Q ss_pred CCCCHHHHHHHHHHCCCEEEE-EECCCHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 454338999999841986999-8167234223226550864134310100000000001563105211388775323310
Q gi|254780960|r 153 YNPGGYELVHTMKQNGASTLL-VTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKL 231 (297)
Q Consensus 153 ~~~~~~~~i~~l~~~g~~v~i-isg~~~~~~~~ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~ 231 (297)
+.|+..+.++. +.| .|.+.......++...+++-.+-..+..+...+...+. + -..-...+
T Consensus 78 p~pD~~~~L~~-------~a~~~~N~s~~~~~~~~~~~~l~~~~d~~lS~d~~a~KP~P~---V--------Y~~~~~~~ 139 (162)
T TIGR01493 78 PWPDSAAALKR-------VAIAASNASHAAVEQVAKQAGLPWAFDRLLSVDTRAYKPDPK---V--------YELALDTV 139 (162)
T ss_pred CCCCHHHHHHH-------HHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCH---H--------HHHHHHHH
T ss_conf 99872889999-------999830453678999876403602343220236654169725---6--------77666531
Q ss_pred CCCCCEEEEEECCCCHHH
Q ss_conf 377667999978923488
Q gi|254780960|r 232 QINPEDTIAVGDGNNDLD 249 (297)
Q Consensus 232 ~~~~~~v~avGDg~ND~p 249 (297)
+++.++|.|+--+.-|+-
T Consensus 140 ~~~pd~vl~Va~~~wD~~ 157 (162)
T TIGR01493 140 GLPPDRVLFVAAHQWDLA 157 (162)
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 278622578665256664
No 208
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.65 E-value=47 Score=12.99 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHCCC-EEEEEECCCHHHHH-HHHHHHCCCHHHHH
Q ss_conf 433899999984198-69998167234223-22655086413431
Q gi|254780960|r 155 PGGYELVHTMKQNGA-STLLVTGGFSIFAR-FIAQHLGFDQYYAN 197 (297)
Q Consensus 155 ~~~~~~i~~l~~~g~-~v~iisg~~~~~~~-~ia~~lgi~~~~a~ 197 (297)
+.+++.++.+++.|. ++.++-|+...... ..++++|.+.++.+
T Consensus 65 ~~~~~~i~~l~~~g~~~i~v~vGG~~~~~~~~~~~~~Gad~~~~~ 109 (119)
T cd02067 65 TLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCEEECC
T ss_conf 899999999997699998599989989743999998699799778
No 209
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=21.25 E-value=51 Score=12.81 Aligned_cols=94 Identities=22% Similarity=0.268 Sum_probs=47.4
Q ss_pred HCCCCCCHHHHHHHHHHCC-CEEEEEECCCHHHHHHHHHHHC-CCHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1134543389999998419-8699981672342232265508-6413431010000000000156310521138877532
Q gi|254780960|r 150 KITYNPGGYELVHTMKQNG-ASTLLVTGGFSIFARFIAQHLG-FDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEA 227 (297)
Q Consensus 150 ~~~~~~~~~~~i~~l~~~g-~~v~iisg~~~~~~~~ia~~lg-i~~~~a~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l 227 (297)
.+.+.|...+.++.+++.| ..+.+||.+.. ..+.+.+. .+.++...-..+.. ..-++..+. .....+.+.+-
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~L~~~dql~~sLdA~~~~-~~~~InRP~--~~~~~e~ile~ 163 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEELKLPDQLYVSLDAPDEK-TFRRINRPH--KKDSWEKILEG 163 (296)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEECCCH---HHHHHHHCCCCEEEEEECCCCHH-HHHHHCCCC--CCCHHHHHHHH
T ss_conf 8334648899999998607950899938976---99998740588799981468888-999834888--74529999999
Q ss_pred HHHHCC--CCCEE--EEEECCCCHHH
Q ss_conf 331037--76679--99978923488
Q gi|254780960|r 228 IQKLQI--NPEDT--IAVGDGNNDLD 249 (297)
Q Consensus 228 ~~~~~~--~~~~v--~avGDg~ND~p 249 (297)
...+.- .+.-+ .|...|.||-.
T Consensus 164 L~~~~~~~~~~~vir~tlvkg~N~~~ 189 (296)
T COG0731 164 LEIFRSEYKGRTVIRTTLVKGINDDE 189 (296)
T ss_pred HHHHHHCCCCCEEEEEEEECCCCCCH
T ss_conf 99740127874899999852646870
No 210
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=20.95 E-value=51 Score=12.77 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=7.8
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 389999998419869998
Q gi|254780960|r 157 GYELVHTMKQNGASTLLV 174 (297)
Q Consensus 157 ~~~~i~~l~~~g~~v~ii 174 (297)
+.+.+..|.+.|+.+++|
T Consensus 125 t~~~~~lldA~G~DVI~v 142 (333)
T TIGR00750 125 TRELVKLLDAAGYDVILV 142 (333)
T ss_pred HHHHHHHHHHCCCCEEEE
T ss_conf 999999998638987999
No 211
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=20.89 E-value=51 Score=12.76 Aligned_cols=37 Identities=19% Similarity=0.068 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCH
Q ss_conf 3899999984198699981672342232265508641
Q gi|254780960|r 157 GYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ 193 (297)
Q Consensus 157 ~~~~i~~l~~~g~~v~iisg~~~~~~~~ia~~lgi~~ 193 (297)
..+..+.+++.|..++.||.|.....+..+++.|+..
T Consensus 46 ~~~~~~~~~~~g~~vv~IS~d~~~~~~~~~~~~~~~f 82 (140)
T cd03017 46 FRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPF 82 (140)
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCC
T ss_conf 9999999874198489982788999999999869983
Done!