HHsearch alignment for GI: 254780960 and conserved domain: pfam08645

>pfam08645 PNK3P Polynucleotide kinase 3 phosphatase. Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin.
Probab=92.29  E-value=0.35  Score=26.00  Aligned_cols=81  Identities=20%  Similarity=0.213  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHHHCCCEEEEEECCCHH----------HHHH---HHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHH
Q ss_conf             34543389999998419869998167234----------2232---2655086413431010000000000156310521
Q gi|254780960|r  152 TYNPGGYELVHTMKQNGASTLLVTGGFSI----------FARF---IAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGT  218 (297)
Q Consensus       152 ~~~~~~~~~i~~l~~~g~~v~iisg~~~~----------~~~~---ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~  218 (297)
T Consensus        29 ~~~p~V~~~L~~L~~~gY~iVIvTNQ~Gi~~~~~~~~~~~~~ki~~~~~~~~~~~~~--------------~~~~~~d~~   94 (158)
T pfam08645        29 WLYPSVPEKLKKLHEDGYKIVIFTNQGGIGTKGKKSAESFKNKIEAILKKLDVPLQV--------------YAATKKDKY   94 (158)
T ss_pred             ECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE--------------EEECCCCCC
T ss_conf             807788999999998898799994775335577347999999999999986997899--------------994487656


Q ss_pred             HHHHH--HHHHHHHHC----CCCCEEEEEECCCC
Q ss_conf             13887--753233103----77667999978923
Q gi|254780960|r  219 AKSQI--LLEAIQKLQ----INPEDTIAVGDGNN  246 (297)
Q Consensus       219 ~k~~~--~~~l~~~~~----~~~~~v~avGDg~N  246 (297)
T Consensus        95 RKP~~GM~~~~~~~~~~~~~iD~~~Sf~vGDaag  128 (158)
T pfam08645        95 RKPNTGMWDELLEDYNDGITIDLEKSFYVGDAAG  128 (158)
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCC
T ss_conf             7997369999999725675446530189843668