HHsearch alignment for GI: 254780960 and conserved domain: pfam08645
>pfam08645 PNK3P Polynucleotide kinase 3 phosphatase. Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin.
Probab=92.29 E-value=0.35 Score=26.00 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCHH----------HHHH---HHHHHCCCHHHHHCCCCHHHCCCCCCCCCCCCHH
Q ss_conf 34543389999998419869998167234----------2232---2655086413431010000000000156310521
Q gi|254780960|r 152 TYNPGGYELVHTMKQNGASTLLVTGGFSI----------FARF---IAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGT 218 (297)
Q Consensus 152 ~~~~~~~~~i~~l~~~g~~v~iisg~~~~----------~~~~---ia~~lgi~~~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (297)
T Consensus 29 ~~~p~V~~~L~~L~~~gY~iVIvTNQ~Gi~~~~~~~~~~~~~ki~~~~~~~~~~~~~--------------~~~~~~d~~ 94 (158)
T pfam08645 29 WLYPSVPEKLKKLHEDGYKIVIFTNQGGIGTKGKKSAESFKNKIEAILKKLDVPLQV--------------YAATKKDKY 94 (158)
T ss_pred ECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE--------------EEECCCCCC
T ss_conf 807788999999998898799994775335577347999999999999986997899--------------994487656
Q ss_pred HHHHH--HHHHHHHHC----CCCCEEEEEECCCC
Q ss_conf 13887--753233103----77667999978923
Q gi|254780960|r 219 AKSQI--LLEAIQKLQ----INPEDTIAVGDGNN 246 (297)
Q Consensus 219 ~k~~~--~~~l~~~~~----~~~~~v~avGDg~N 246 (297)
T Consensus 95 RKP~~GM~~~~~~~~~~~~~iD~~~Sf~vGDaag 128 (158)
T pfam08645 95 RKPNTGMWDELLEDYNDGITIDLEKSFYVGDAAG 128 (158)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCC
T ss_conf 7997369999999725675446530189843668