RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB
[Candidatus Liberibacter asiaticus str. psy62]
(297 letters)
>gnl|CDD|161826 TIGR00338, serB, phosphoserine phosphatase SerB. Phosphoserine
phosphatase catalyzes the reaction 3-phospho-serine +
H2O = L-serine + phosphate. It catalyzes the last of
three steps in the biosynthesis of serine from
D-3-phosphoglycerate. Note that this enzyme acts on free
phosphoserine, not on phosphoserine residues of
phosphoproteins.
Length = 219
Score = 207 bits (530), Expect = 2e-54
Identities = 92/209 (44%), Positives = 137/209 (65%), Gaps = 1/209 (0%)
Query: 77 NRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFK 136
R K L++ DMDST+I E IDE+A + G++E+VS IT RAM GE+ F+ SLRER++L K
Sbjct: 11 LRSKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLK 70
Query: 137 GTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYA 196
G +++ + + + G ELV T+K+ G +++GGF +FA + LG D +A
Sbjct: 71 GLPVELLKEV-RENLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFA 129
Query: 197 NRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGY 256
NR +D +LTG V PI+D + K + LL ++K I+PE+T+AVGDG NDL M++ AG
Sbjct: 130 NRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKEGISPENTVAVGDGANDLSMIKAAGL 189
Query: 257 GVAFHAKPALAKQAKIRIDHSDLEALLYI 285
G+AF+AKP L ++A I I+ DL +L +
Sbjct: 190 GIAFNAKPKLQQKADICINKKDLTDILPL 218
>gnl|CDD|182988 PRK11133, serB, phosphoserine phosphatase; Provisional.
Length = 322
Score = 198 bits (505), Expect = 2e-51
Identities = 84/204 (41%), Positives = 123/204 (60%), Gaps = 1/204 (0%)
Query: 82 LLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTK 141
LL+ DMDST I+ ECIDE+A L G E+V+ +T RAM GE+ F+ SLR+R++ KG
Sbjct: 112 LLVMDMDSTAIQIECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKGADAN 171
Query: 142 IIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIE 201
I+ + E + PG ELV ++ G + +GGF+ FA ++ L D AN
Sbjct: 172 ILQQVREN-LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEI 230
Query: 202 KDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH 261
D +LTG V+ I+D K+ L Q+ +I T+A+GDG NDL M++ AG G+A+H
Sbjct: 231 MDGKLTGNVLGDIVDAQYKADTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAYH 290
Query: 262 AKPALAKQAKIRIDHSDLEALLYI 285
AKP + +QA++ I H+DL +L I
Sbjct: 291 AKPKVNEQAQVTIRHADLMGVLCI 314
>gnl|CDD|162386 TIGR01488, HAD-SF-IB, Haloacid Dehalogenase superfamily, subfamily
IB, phosphoserine phosphatase-like. Subfamily IA
includes the enzyme phosphoserine phosphatase
(TIGR00338) as well as three hypothetical equivalogs.
Many members of these hypothetical equivalogs have been
annotated as PSPase-like or PSPase-family proteins. In
particular, the hypothetical equivalog which appears to
be most closely related to PSPase contains only Archaea
(while TIGR00338 contains only eukaryotes and bacteria)
of which some are annotated as PSPases. Although this is
a reasonable conjecture, none of these sequences has
sufficient evidence for this assignment. If such should
be found, this model should be retired while the PSPase
model should be broadened to include these sequences.
Length = 177
Score = 107 bits (268), Expect = 5e-24
Identities = 63/177 (35%), Positives = 101/177 (57%), Gaps = 4/177 (2%)
Query: 82 LLIADMDSTMIEQEC-IDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGT-S 139
L I D D T+ Q+ ID LA L+G ++V +T A +G I F+D+L R++L + S
Sbjct: 1 LAIFDFDGTLTRQDSLIDLLAKLLGTNDEVIELTRLAPSGRISFEDALGRRLALLHRSRS 60
Query: 140 TKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRF 199
++ L +++ PG EL+ +K+ G T++V+GGF F +A+ LG D +ANR
Sbjct: 61 EEVAKEFLARQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRL 120
Query: 200 IEKDD-RLTGQ-VMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVA 254
D+ LTG + +G K ++L E +++ +I + IAVGD NDL ML++A
Sbjct: 121 EFDDNGLLTGPIEGQVNPEGECKGKVLKELLEESKITLKKIIAVGDSVNDLPMLKLA 177
>gnl|CDD|178540 PLN02954, PLN02954, phosphoserine phosphatase.
Length = 224
Score = 105 bits (264), Expect = 2e-23
Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 10/170 (5%)
Query: 86 DMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDS 145
D+DST+ E IDELA+ G E V+ TA+AM G +PF+++L R+SLFK + +++ +
Sbjct: 18 DVDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEF 77
Query: 146 LLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGF--DQYYANRFIEKD 203
L ++ +PG ELV ++ G LV+GGF +A LG + +AN+ + D
Sbjct: 78 LEKRPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGD 137
Query: 204 D-RLTG-QVMEPIIDGTAKSQILLEAIQKL-QINPEDTIA-VGDGNNDLD 249
G EP T++S EA+Q + + + T+ +GDG DL+
Sbjct: 138 SGEYAGFDENEP----TSRSGGKAEAVQHIKKKHGYKTMVMIGDGATDLE 183
>gnl|CDD|162387 TIGR01490, HAD-SF-IB-hyp1, HAD-superfamily subfamily IB hydrolase,
TIGR01490. A subset of these sequences, including the
Caulobacter crescentus CicA protein, cluster together
and may represent a separate equivalog.
Length = 202
Score = 64.7 bits (158), Expect = 3e-11
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 154 NPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIE-KDDRLTGQVME 212
P +L+ K G + +LV+ +I + +A+ LG D R E +D TG +
Sbjct: 89 YPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDG 148
Query: 213 PIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAG 255
G K L E + + QI+ +D+ A GD +DL +L + G
Sbjct: 149 NNCKGEGKVHALAELLAEEQIDLKDSYAYGDSISDLPLLSLVG 191
>gnl|CDD|162388 TIGR01491, HAD-SF-IB-PSPlk, HAD-superfamily, subfamily-IB
PSPase-like hydrolase, archaeal. This hypothetical
equivalog is a member of the IB subfamily (TIGR01488) of
the haloacid dehalogenase (HAD) superfamily of
aspartate-nucleophile hydrolases. The sequences modelled
by this alignment are all from archaeal species. The
phylogenetically closest group of sequences to these are
phosphoserine phosphatases (TIGR00338). There are no
known archaeal phosphoserine phosphatases, and no
archaea fall within TIGR00338. It is likely, then, that
This model represents the archaeal branch of the PSPase
equivalog.
Length = 201
Score = 61.8 bits (150), Expect = 2e-10
Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 8/192 (4%)
Query: 78 RRKNLLIADMDSTMIEQECIDELADL-IGIKEKVSLITARAMNGEIPFQDSLRERISLFK 136
R L+I D+D T+ + E + +G I +++ R SL+K
Sbjct: 2 RMIKLIIFDLDGTLTDVMSSWEYLHRRLETCGLAKKNAELFFSGRISYEEWARLDASLWK 61
Query: 137 GTSTKIIDSLLE---KKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ 193
S ++ +E K+I+ ELV +K+ G T +V+GG A+ +A+ L D
Sbjct: 62 RRSGRLRREEVEEIFKEISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY 121
Query: 194 YYANRFI-EKDDRLTGQVMEPIIDGTAKSQILLEAIQK-LQINPEDTIAVGDGNNDLDML 251
Y+N + ++ + + + +E +++ L + +T+AVGD NDL M
Sbjct: 122 VYSNELVFDEKGFIQPDGI--VRVTFDNKGEAVERLKRELNPSLTETVAVGDSKNDLPMF 179
Query: 252 RVAGYGVAFHAK 263
VA ++ +
Sbjct: 180 EVADISISLGDE 191
>gnl|CDD|161707 TIGR00099, Cof-subfamily, Cof subfamily of IIB subfamily of
haloacid dehalogenase superfamily. The members of this
subfamily are restricted almost exclusively to bacteria
(one sequences from S. pombe scores above trusted, while
another is between trusted and noise). It is notable
that no archaea are found in this group, the closest
relations to the archaea found here being two
Deinococcus sequences.
Length = 256
Score = 53.8 bits (130), Expect = 6e-08
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 211 MEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH-AKPALAKQ 269
+E G +K L + L I+ ED IA GDG ND++ML AGYGVA A L
Sbjct: 180 IEITAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNADEELKAL 239
Query: 270 AKIRIDHSD 278
A D ++
Sbjct: 240 ADYVTDSNN 248
>gnl|CDD|179236 PRK01158, PRK01158, phosphoglycolate phosphatase; Provisional.
Length = 230
Score = 52.7 bits (127), Expect = 1e-07
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 224 LLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
L + + + I+PE+ A+GD NDL+M VAG+GVA
Sbjct: 162 LKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVA 197
>gnl|CDD|116866 pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This
family contains haloacid dehalogenase-like hydrolase
enzymes.
Length = 254
Score = 51.9 bits (125), Expect = 2e-07
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 217 GTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFH-AKPALAKQAKIRID 275
G +K L + L I+ E+ IA GDG ND++ML +AG GVA A P + A
Sbjct: 184 GVSKGTALKALAKHLGIDLEEVIAFGDGENDIEMLELAGLGVAMGNASPEVKAAADYVTG 243
Query: 276 HSD 278
++
Sbjct: 244 SNN 246
>gnl|CDD|162384 TIGR01482, SPP-subfamily, Sucrose-phosphate phosphatase subfamily.
catalyze the same reaction as SPP.
Length = 225
Score = 49.0 bits (117), Expect = 1e-06
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 217 GTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRID 275
G K + + +KL I P +T+ GD ND+D+ V G+GVA +A+P L + A +
Sbjct: 147 GVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGVAVANAQPELKEWADYVTE 206
Query: 276 HSDLEA 281
E
Sbjct: 207 SPYGEG 212
>gnl|CDD|130551 TIGR01487, SPP-like, sucrose-phosphate phosphatase-like hydrolase,
Archaeal. TIGR01482, in turn, is a member of the IIB
subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases.
Length = 215
Score = 47.4 bits (113), Expect = 4e-06
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 202 KDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
D +M+ +D K + + + L I PE+ A+GD ND+D+ RV G+ VA
Sbjct: 133 VDSGFAIHIMKKGVD---KGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVA 187
>gnl|CDD|184163 PRK13582, thrH, phosphoserine phosphatase; Provisional.
Length = 205
Score = 43.8 bits (104), Expect = 5e-05
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRF-IEKDDRLTGQVMEP 213
PG E + +++ ++++ F FA + + LG+ + + +++D +TG +
Sbjct: 71 PGAVEFLDWLRERF-QVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLR- 128
Query: 214 IIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQA 270
DG +A++ L+ IA GD ND ML A G+ F + +
Sbjct: 129 QPDGK------RQAVKALKSLGYRVIAAGDSYNDTTMLGEADAGILFRPPANVIAEF 179
>gnl|CDD|162385 TIGR01484, HAD-SF-IIB, HAD-superfamily hydrolase, subfamily IIB.
The IIB subfamily consists of Trehalose-6-phosphatase
(TIGR00685), plant and cyanobacterial
Sucrose-phosphatase and a closely related group of
bacterial and archaeal sequences, eukaryotic
phosphomannomutase (pfam03332), a large subfamily
("Cof-like hydrolases", TIGR00099) containing many
closely related bacterial sequences, a hypothetical
equivalog containing the E. coli YedP protein, as well
as two small clusters containing sequences whose
relationship to the other groups is unclear.
Length = 204
Score = 42.4 bits (100), Expect = 1e-04
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 220 KSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
K L +++L ++ +A GD ND +M VAG VA
Sbjct: 164 KGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVA 203
>gnl|CDD|130521 TIGR01454, AHBA_synth_RP, 3-amino-5-hydroxybenoic acid synthesis
related protein. The most closely related enzyme below
the noise cutoff is IndB which is involved in the
biosynthesis of Indigoidine in Pectobacterium (Erwinia)
chrysanthemi, a gamma proteobacter. This enzyme is
similarly related to PGP. In this case, too it is
unclear what role would be be played by a PGPase
activity.
Length = 205
Score = 41.8 bits (98), Expect = 2e-04
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTG--QVME 212
PG EL+ ++ +G T + TG AR + + LG + D + G +V
Sbjct: 78 PGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLF--------DHVIGSDEVPR 129
Query: 213 PIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
P I+ EA++ L + PED + VGD DL R AG
Sbjct: 130 P----KPAPDIVREALRLLDVPPEDAVMVGDAVTDLASARAAGTATV 172
>gnl|CDD|162399 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This alignment encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 41.5 bits (98), Expect = 3e-04
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 23/133 (17%)
Query: 155 PGGYELVHTMKQ-NGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEP 213
P E + +K+ G +++TG A +A LG D+ +A
Sbjct: 387 PEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAE---------------- 430
Query: 214 IIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQ-AKI 272
+ L +++LQ VGDG ND L A G+A A +A + A I
Sbjct: 431 -----LLPEDKLAIVKELQEEGGVVAMVGDGINDAPALAAADVGIAMGAGSDVAIEAADI 485
Query: 273 RIDHSDLEALLYI 285
+ + DL +L
Sbjct: 486 VLLNDDLSSLPTA 498
>gnl|CDD|130575 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. One member from Halobacterium is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification.
Length = 562
Score = 40.3 bits (95), Expect = 6e-04
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 22/116 (18%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPI 214
P E++ +K+ G +++TG A+ +A+ LG + A
Sbjct: 408 PEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN-VRAE----------------- 449
Query: 215 IDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQA 270
I++LQ VGDG ND L A G+A A +A +A
Sbjct: 450 ----VLPDDKAALIKELQEKGRVVAMVGDGINDAPALAQADVGIAIGAGTDVAIEA 501
>gnl|CDD|178475 PLN02887, PLN02887, hydrolase family protein.
Length = 580
Score = 40.2 bits (94), Expect = 6e-04
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 210 VMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
++E + GT+K + + L ++P++ +A+GDG ND++ML++A GVA
Sbjct: 498 MLEIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVA 547
>gnl|CDD|162723 TIGR02137, HSK-PSP, phosphoserine phosphatase/homoserine
phosphotransferase bifunctional protein. This enzyme is
a member of the haloacid dehalogenase (HAD) superfamily,
specifically part of subfamily IB by virtue of the
presence of an alpha helical domain in between motifs I
and II of the HAD domain . The closest homologs to this
family are monofunctional phosphoserine phosphatases
(TIGR00338).
Length = 203
Score = 39.9 bits (93), Expect = 9e-04
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 104 IGIKEKVSLITARAMNGEIPFQDSL-RERISLFKGTSTKIIDSLLEKKITYNP--GGYEL 160
I EK + +A +IP D L ++R+ + K+ D + E T P G E
Sbjct: 18 IAFAEKTGIDALKATTRDIPDYDVLMKQRLRILDEHGLKLGD-IQEVIATLKPLEGAVEF 76
Query: 161 VHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRF-IEKDDRLTGQVMEPIIDGTA 219
V +++ ++++ F F++ + + LGF ++ I+ DR+ G + D
Sbjct: 77 VDWLRER-FQVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLR-QKDPKR 134
Query: 220 KSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQ 269
+S I A + L IA GD ND ML A G+ FHA + ++
Sbjct: 135 QSVI---AFKSLYYR---VIAAGDSYNDTTMLSEAHAGILFHAPENVIRE 178
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit. One sequence
is apparently mis-annotated in the primary literature,
but properly annotated by TIGR.
Length = 675
Score = 39.5 bits (92), Expect = 0.001
Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 27/166 (16%)
Query: 116 RAMNGEIPFQ-DSLRERISLFKGTSTKI-----IDSLLEKKITYNPGGYELVHTMKQNGA 169
A G IP D ++++ GT + I ++ K G E +++ G
Sbjct: 404 EANGGHIPTDLDQAVDQVARQGGTPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKMGI 463
Query: 170 STLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQ 229
T+++TG + A IA G D + A A + + I+
Sbjct: 464 KTIMITGDNRLTAAAIAAEAGVDDFIAE---------------------ATPEDKIALIR 502
Query: 230 KLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRID 275
+ Q + GDG ND L A GVA ++ AK+A +D
Sbjct: 503 QEQAEGKLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAANMVD 548
>gnl|CDD|182509 PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.
Length = 270
Score = 38.1 bits (89), Expect = 0.003
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 229 QKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
+ L I PE+ +A+GD ND+ M+ AG GVA
Sbjct: 206 EHLGIKPEEVMAIGDQENDIAMIEYAGVGVA 236
>gnl|CDD|162389 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The crystal structure of one
calcium-pumping ATPase and an analysis of the fold of
the catalytic domain of the P-type ATPases have been
published. These reveal that the catalytic core of these
enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 499
Score = 38.0 bits (89), Expect = 0.003
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 24/111 (21%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPI 214
E + +++ G +++TG + A+ IA+ LG +A + P
Sbjct: 350 DDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI---FAR-------------VTP- 392
Query: 215 IDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPA 265
K+ + ++ LQ GDG ND L+ A G+A AK A
Sbjct: 393 ---EEKAAL----VEALQKKGRVVAMTGDGVNDAPALKKADVGIAMGAKAA 436
>gnl|CDD|162397 TIGR01512, ATPase-IB2_Cd, heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Length = 536
Score = 35.8 bits (83), Expect = 0.016
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 24/131 (18%)
Query: 155 PGGYELVHTMKQNGAS-TLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEP 213
P E + +K G +++TG A +A+ LG D+ +A
Sbjct: 365 PDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAE---------------- 408
Query: 214 IIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAK-PALAKQ-AK 271
+ LE +++L+ VGDG ND L A G+A A +A + A
Sbjct: 409 -----LLPEDKLEIVKELREKYGPVAMVGDGINDAPALAAADVGIAMGASGSDVAIETAD 463
Query: 272 IRIDHSDLEAL 282
+ + + DL L
Sbjct: 464 VVLLNDDLSRL 474
>gnl|CDD|181313 PRK08238, PRK08238, hypothetical protein; Validated.
Length = 479
Score = 35.2 bits (82), Expect = 0.018
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 153 YNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLG-FDQYYANRFIEKDDRLTGQVM 211
YN + + + G +L T A+ +A HLG FD +A+ D
Sbjct: 73 YNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLFDGVFAS-----DGTTN---- 123
Query: 212 EPIIDGTAKSQILLEAIQKLQINPEDTIA-VGDGNNDLDMLRVAGYGVAFHAKPALAKQA 270
+ G AK+ L+EA E G+ DL + A + A P +A+ A
Sbjct: 124 ---LKGAAKAAALVEAF------GERGFDYAGNSAADLPVWAAARRAIVVGASPGVARAA 174
Query: 271 K 271
+
Sbjct: 175 R 175
>gnl|CDD|182878 PRK10976, PRK10976, putative hydrolase; Provisional.
Length = 266
Score = 35.4 bits (82), Expect = 0.018
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 211 MEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG 257
+E + G +K L +KL + +D IA GDG ND +ML +AG G
Sbjct: 182 LEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKG 228
>gnl|CDD|182523 PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase;
Provisional.
Length = 272
Score = 35.4 bits (82), Expect = 0.020
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 236 EDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDH 276
++ +A GD ND+ ML AG GVA +A A+ +A + I
Sbjct: 216 KNVVAFGDNFNDISMLEAAGLGVAMGNADDAVKARADLVIGD 257
>gnl|CDD|178922 PRK00192, PRK00192, mannosyl-3-phosphoglycerate phosphatase;
Reviewed.
Length = 273
Score = 34.9 bits (81), Expect = 0.027
Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 238 TIAVGDGNNDLDMLRVAGYGV----AFHAKPALAKQ-AKIRIDHSDLE 280
TIA+GD NDL ML A V P L A +
Sbjct: 210 TIALGDSPNDLPMLEAADIAVVVPGPDGPNPPLLPGIADGEFILASAP 257
>gnl|CDD|130516 TIGR01449, PGP_bact, 2-phosphoglycolate phosphatase, prokaryotic.
This enzyme is a member of the Haloacid Dehalogenase
(HAD) superfamily of aspartate-nucleophile hydrolase
enzymes (pfam00702).
Length = 213
Score = 32.5 bits (74), Expect = 0.12
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 224 LLEAIQKLQINPEDTIAVGDGNNDLDMLRVAG-------YGVAFHAKPALAKQAKIRIDH 276
LL A ++L + P+ + VGD D+ R AG YG + L +
Sbjct: 147 LLLAAERLGVAPQQMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSL 206
Query: 277 SDLEALL 283
++L LL
Sbjct: 207 NELPPLL 213
>gnl|CDD|162049 TIGR00805, oat, sodium-independent organic anion transporter.
Proteins of the OAT family catalyze the Na+-independent
facilitated transport of organic anions such as
bromosulfobromophthalein and prostaglandins as well as
conjugated and unconjugated bile acids (taurocholate and
cholate, respectively). These transporters have been
characterized in mammals, but homologues are present in
C. elegans and A. thaliana. Some of the mammalian
proteins exhibit a high degree of tissue specificity.
For example, the rat OAT is found at high levels in
liver and kidney and at lower levels in other tissues.
These proteins possess 10-12 putative a-helical
transmembrane spanners. They may catalyze electrogenic
anion uniport or anion exchange.
Length = 633
Score = 32.4 bits (74), Expect = 0.14
Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 15/90 (16%)
Query: 126 DSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFI 185
D R++ S KII LL I Y LV + +L G + +++
Sbjct: 306 DKSRKKNSDITKDFPKIIKRLLCNPI------YMLVILAQV--IDSLAFNGYITFLPKYL 357
Query: 186 AQHLGFDQYYANRFIEKDDRLTGQVMEPII 215
G AN L G V P
Sbjct: 358 ENQYGISSAEAN-------FLIGVVNLPAA 380
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
Length = 834
Score = 31.6 bits (72), Expect = 0.22
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 21/94 (22%)
Query: 166 QNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILL 225
+ G +++TG A IA+ G D+ A V+ DG A
Sbjct: 664 KAGYRLVMLTGDNPTTANAIAKEAGIDEVIAG------------VLP---DGKA------ 702
Query: 226 EAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
EAI++LQ VGDG ND L A G+A
Sbjct: 703 EAIKRLQSQGRQVAMVGDGINDAPALAQADVGIA 736
>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B;
Provisional.
Length = 673
Score = 31.6 bits (71), Expect = 0.22
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 21/112 (18%)
Query: 164 MKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQI 223
+++ G T++ TG + A IA+ G D++ A K +
Sbjct: 453 LREMGIETVMCTGDNELTAATIAKEAGVDRFVAE---------------------CKPED 491
Query: 224 LLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRID 275
+ I++ Q GDG ND L A G+A ++ AK+A ID
Sbjct: 492 KINVIREEQAKGHIVAMTGDGTNDAPALAEANVGLAMNSGTMSAKEAANLID 543
>gnl|CDD|183901 PRK13222, PRK13222, phosphoglycolate phosphatase; Provisional.
Length = 226
Score = 31.7 bits (73), Expect = 0.24
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 22/107 (20%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPI 214
PG E + +K G +VT + F + + LG Y+ +
Sbjct: 96 PGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYF----------------SVV 139
Query: 215 IDGTAKSQI------LLEAIQKLQINPEDTIAVGDGNNDLDMLRVAG 255
I G + LL A +KL ++PE+ + VGD ND+ R AG
Sbjct: 140 IGGDSLPNKKPDPAPLLLACEKLGLDPEEMLFVGDSRNDIQAARAAG 186
>gnl|CDD|130549 TIGR01485, SPP_plant-cyano, sucrose-6F-phosphate phosphohydrolase.
Sucrose phosphate synthase (SPS), the prior step in the
biosynthesis of sucrose contains a domain which exhibits
considerable similarity to SPP albeit without
conservation of the catalytic residues. The catalytic
machinery of the synthase resides in another domain. It
seems likely that the phosphatase-like domain is
involved in substrate binding, possibly binding both
substrates in a "product-like" orientation prior to
ligation by the synthase catalytic domain.
Length = 249
Score = 31.3 bits (71), Expect = 0.28
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 208 GQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAG-YGV 258
G+ ++ + G+ K Q L +QKL + P T+ GD ND+++ + GV
Sbjct: 156 GKDLDILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGV 207
>gnl|CDD|183951 PRK13288, PRK13288, pyrophosphatase PpaX; Provisional.
Length = 214
Score = 31.2 bits (71), Expect = 0.33
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 224 LLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGY---GVAFHAKPA 265
+L+A++ L PE+ + VGD ++D+ + AG GVA+ K
Sbjct: 144 VLKALELLGAKPEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGR 188
>gnl|CDD|130550 TIGR01486, HAD-SF-IIB-MPGP, mannosyl-3-phosphoglycerate phosphatase
family. This small group of proteins is a member of the
IIB subfamily (TIGR01484) of the Haloacid Dehalogenase
(HAD) superfamily of aspartate-nucleophile hydrolases.
Several members of this family from thermophiles (and
from Dehalococcoides ethenogenes) are now known to act
as mannosyl-3-phosphoglycerate (MPG) phosphatase. In
these cases, the enzyme acts after MPG synthase to make
the compatible solute mannosylglycerate. We propose that
other mesophilic members of this family do not act as
mannosyl-3-phosphoglycerate phosphatase. A member of
this family is found in Escherichia coli, which appears
to lack MPG synthase. Mannosylglycerate is imported in
E. coli by phosphoenolpyruvate-dependent transporter
(PubMed:14645248), but it appears the phosphorylation is
not on the glycerate moiety, that the phosphorylated
import is degraded by an alpha-mannosidase from an
adjacent gene, and that E. coli would have no pathway to
obtain MPG.
Length = 256
Score = 30.8 bits (70), Expect = 0.38
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 217 GTAKSQILLEAIQKLQINPED--TIAVGDGNNDLDMLRVAGYGV 258
G+ K + Q + +GD NDL +L V V
Sbjct: 174 GSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAV 217
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. The calcium P-type ATPases have been
characterized as Type IIA based on a phylogenetic
analysis which distinguishes this group from the Type
IIB PMCA calcium pump modelled by TIGR01517. A separate
analysis divides Type IIA into sub-types, SERCA and PMR1
the former of which is modelled by TIGR01116.
Length = 884
Score = 31.0 bits (70), Expect = 0.43
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGF-----DQYYANRFIEKDDRLTGQ 209
PG E V T+ G +++TG A IA+ LG + DD+ Q
Sbjct: 531 PGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQ 590
Query: 210 VMEPI-IDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
++ + + A + ++ ++ LQ + GDG ND L++A GVA
Sbjct: 591 IVPKVAVFARASPEHKMKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVA 641
>gnl|CDD|129317 TIGR00213, GmhB_yaeD, D,D-heptose 1,7-bisphosphate phosphatase.
This family of proteins formerly designated yaeD
resembles the histidinol phosphatase domain of the
bifunctional protein HisB. The member from E. coli has
been characterized as D,D-heptose 1,7-bisphosphate
phosphatase, GmhB, involved in inner core LPS assembly
(PubMed:11751812).
Length = 176
Score = 30.3 bits (68), Expect = 0.70
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 220 KSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDL 279
K +LL+A ++L I+ + VGD D+ AG L + K ++
Sbjct: 108 KPGMLLQARKELHIDMAQSYMVGDKLEDM----QAGVAAKVKTN-VLVRTGKPITPEAE- 161
Query: 280 EALLYIQGYKKDEIVKSP 297
I + + + P
Sbjct: 162 ----NIADWVLNSLADLP 175
>gnl|CDD|130580 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1), which are modelled
by the corresponding TIGR01116 and TIGR01522. This model
is well separated from the two others.
Length = 941
Score = 30.1 bits (68), Expect = 0.71
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDD--RLTGQVME 212
PG E V ++ G + +VTG A+ IA++ G + +E + RL + M+
Sbjct: 582 PGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGI-LTFGGLAMEGKEFRRLVYEEMD 640
Query: 213 PIIDG---TAKS-----QILLEAIQKLQINPEDTIAV-GDGNNDLDMLRVAGYGVA 259
PI+ A+S Q+L+ ++ + + +AV GDG ND L++A G +
Sbjct: 641 PILPKLRVLARSSPLDKQLLVLMLKDMG----EVVAVTGDGTNDAPALKLADVGFS 692
>gnl|CDD|177475 PHA02693, PHA02693, hypothetical protein; Provisional.
Length = 710
Score = 30.0 bits (67), Expect = 0.80
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 226 EAIQKLQINPEDTIAVGDGNN 246
E I KL+I+PED +A+ D N
Sbjct: 166 EMIPKLEISPEDLVALADKGN 186
>gnl|CDD|178732 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 29.5 bits (66), Expect = 0.99
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 238 TIAVGDGNNDLDMLRVAGYGVAFHAK 263
T+A+GDG ND+ M+++A GV +
Sbjct: 874 TLAIGDGANDVSMIQMADVGVGISGQ 899
>gnl|CDD|131516 TIGR02463, MPGP_rel, mannosyl-3-phosphoglycerate
phosphatase-related protein. This family consists of
members of the HAD superfamily, subfamily IIB. All
members are closely related to
mannosyl-3-phosphoglycerate phosphatase, the second
enzyme in a two-step pathway for biosynthesis of
mannosylglycerate, a compatible solute present in some
thermophiles and in Dehalococcoides ethenogenes.
However, members of this family are separable in a
neighbor-joining tree constructed from a multiple
sequence alignment and are found only in mesophiles that
lack the companion mannosyl-3-phosphoglycerate synthase
(TIGR02460). Members of this family are like to act on a
compound related to yet distinct from
mannosyl-3-phosphoglycerate.
Length = 221
Score = 29.7 bits (67), Expect = 1.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 217 GTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGV 258
++K + T+ +GDG NDL +L VA Y V
Sbjct: 177 SSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAV 218
>gnl|CDD|162429 TIGR01574, miaB-methiolase, tRNA-N(6)-(isopentenyl)adenosine-37
thiotransferase enzyme MiaB. Hits to this model span
all major groups of bacteria and eukaryotes, but not
archaea, which are known to lack this particular tRNA
modification. The enzyme from Thermotoga maritima has
been cloned, expressed, spectroscopically characterized
and shown to complement the E. coli MiaB enzyme.
Length = 438
Score = 29.4 bits (66), Expect = 1.1
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 8/108 (7%)
Query: 39 SIACDIILPLEGMIDHHRSKILSIIADKPIDLIIHRHENRRKNLLIADMDSTMIEQECID 98
SI+ DII+ G + + L ++ + D + R ADM + E+
Sbjct: 299 SISTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPRPGTPAADMPDQIPEEIKKR 358
Query: 99 ELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSL 146
L L ++ R G+ ++ L +G S + L
Sbjct: 359 RLQRLQARHNEILDKKMRKQEGKT-------FKV-LVEGLSRNNPEEL 398
>gnl|CDD|183902 PRK13226, PRK13226, phosphoglycolate phosphatase; Provisional.
Length = 229
Score = 29.1 bits (65), Expect = 1.5
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 224 LLEAIQKLQINPEDTIAVGDGNNDLDMLRVAG-------YGVAFHAKPALAKQAKIRIDH 276
LL A +++ + P D + VGD D+ R AG +G H LA QA + ++
Sbjct: 157 LLVAAERIGVAPTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQ 216
Query: 277 SDL 279
L
Sbjct: 217 PQL 219
>gnl|CDD|162465 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 28.1 bits (63), Expect = 2.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 238 TIAVGDGNNDLDMLRVAGYGV 258
T+A+GDG ND+ M++ A GV
Sbjct: 771 TLAIGDGANDVSMIQEADVGV 791
>gnl|CDD|131514 TIGR02461, osmo_MPG_phos, mannosyl-3-phosphoglycerate phosphatase.
Members of this family are mannosyl-3-phosphoglycerate
phosphatase (EC 3.1.3.70). It acts sequentially after
mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a
two-step pathway of biosynthesis of the compatible
solute mannosylglycerate, a typical osmolyte of
thermophiles.
Length = 225
Score = 28.2 bits (63), Expect = 2.5
Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 36/144 (25%)
Query: 115 ARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLV 174
A G + +S E + G ++ L K+ Y+ E + + G +LV
Sbjct: 105 AENEYGLKYYGNSTAEEVEKLTGLPRELAP--LAKRREYS----ETIFLWSREGWEAILV 158
Query: 175 T---GGFSIF--ARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQ 229
T G RF H G D+ K+ L +
Sbjct: 159 TARARGLKYTHGGRFYTVHGGSDK-------------------------GKAIKRLLDLY 193
Query: 230 KLQINPEDTIAVGDGNNDLDMLRV 253
KL+ +++ +GD ND M V
Sbjct: 194 KLRPGAIESVGLGDSENDFPMFEV 217
>gnl|CDD|179628 PRK03669, PRK03669, mannosyl-3-phosphoglycerate phosphatase;
Reviewed.
Length = 271
Score = 28.1 bits (63), Expect = 2.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 224 LLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGV 258
L+ Q+L T+ +GDG ND +L V Y V
Sbjct: 195 LIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAV 229
>gnl|CDD|179122 PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional.
Length = 304
Score = 28.1 bits (64), Expect = 2.9
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 17/61 (27%)
Query: 238 TIA-VGDGNN----------DLDM-LRVA---GYGV--AFHAKPALAKQAKIRIDHSDLE 280
+A VGDGNN L LRVA GY K A A I + H E
Sbjct: 154 KVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKE 213
Query: 281 A 281
A
Sbjct: 214 A 214
>gnl|CDD|162415 TIGR01549, HAD-SF-IA-v1, haloacid dehalogenase superfamily,
subfamily IA, variant 1 with third motif having Dx(3-4)D
or Dx(3-4)E. HAD subfamilies caused by an overly broad
single model.
Length = 154
Score = 28.1 bits (63), Expect = 2.9
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 153 YNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVME 212
Y G +L+ +K+ G +++ G + + + D I D
Sbjct: 65 YIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKHLGDY---FDLILGSDE------- 114
Query: 213 PIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAG 255
+ +I L A++ L + PE + VGD ND++ R AG
Sbjct: 115 --FGAKPEPEIFLAALESLGLPPE-VLHVGDNLNDIEGARNAG 154
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
The magnesium ATPases have been classified as type IIIB
by a phylogenetic analysis.
Length = 867
Score = 27.9 bits (62), Expect = 3.3
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 159 ELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIE-------KDDRLTGQVM 211
E + + +NG + ++TG I I Q +G D AN F+ D+ L ++
Sbjct: 522 EAIAALFKNGINVKVLTGDNEIVTARICQEVGID---ANDFLLGADIEELSDEELARELR 578
Query: 212 EPII----DGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALA 267
+ I KS+I I L+ +GDG ND LR A G++ +A
Sbjct: 579 KYHIFARLTPMQKSRI----IGLLKKAGHTVGFLGDGINDAPALRKADVGISVDTAADIA 634
Query: 268 KQA 270
K+A
Sbjct: 635 KEA 637
>gnl|CDD|184275 PRK13723, PRK13723, conjugal transfer pilus assembly protein TraH;
Provisional.
Length = 451
Score = 27.8 bits (62), Expect = 3.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 8 ITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIIL 46
I+ + P+ LV M V++S+ Y L D I DI+L
Sbjct: 332 ISSTTIPVFKY-LVDPQMLGVSNSLIYQLTDYIGYDILL 369
>gnl|CDD|132376 TIGR03333, salvage_mtnX,
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase. Members of this family are the methionine
salvage enzyme MnxX, a member of the HAD-superfamily
hydrolases, subfamily IB (see TIGR01488). Members are
found in Bacillus subtilis and related species, paired
with MtnW (TIGR03332). In most species that recycle
methionine from methylthioadenosine, the single protein
MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX
was first known as ykrX.
Length = 214
Score = 27.4 bits (61), Expect = 3.9
Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 24/128 (18%)
Query: 82 LLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTST- 140
+I D D T+ + I I I ++ + A+ + L + +S+ +G
Sbjct: 1 FIICDFDGTITNNDNI------ISIMKQFAPPEWEALKDGV-----LSKTLSIQEGVGRM 49
Query: 141 ----------KIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHL- 189
+I +LE G E V + ++G +++GG F + + +
Sbjct: 50 FGLLPSSLKEEITSFVLETAEI-REGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIV 108
Query: 190 GFDQYYAN 197
D+ Y N
Sbjct: 109 EKDRIYCN 116
>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional.
Length = 402
Score = 27.3 bits (61), Expect = 4.5
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 261 HAKPALAKQAKI-RIDHSDLEALLYI-QGYKK 290
K A + ++ IDH+DL+AL I + K
Sbjct: 150 ILKGICADETEVETIDHNDLDALEDICKTNKT 181
>gnl|CDD|130731 TIGR01670, YrbI-phosphatas, 3-deoxy-D-manno-octulosonate
8-phosphate phosphatase, YrbI family. The
Methanosarcina sequence is distinctive in that it is
linked to an N-terminal cytidylyltransferase domain
(pfam02348) and is annotated as acylneuraminate
cytidylyltransferase. This may give some clue as the
function of these phosphatases. Several eukaryotic
sequences scoring between trusted and noise are also
closely related to this function such as the
CMP-N-acetylneuraminic acid synthetase from mouse, but
in these cases the phosphatase domain is clearly
inactive as many of the active site residues are not
conserved.
Length = 154
Score = 27.1 bits (60), Expect = 5.0
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 203 DDRLTGQVMEPIIDGTAKSQILLEAI-QKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
+DR + + G + I I +KL + PE+ +GD D ++ G VA
Sbjct: 59 EDRCKTLGITHLYQGQSNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGLSVA 116
>gnl|CDD|132560 TIGR03521, GldG, gliding-associated putative ABC transporter
substrate-binding component GldG. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldG
is a protein linked to a type of rapid surface gliding
motility found in certain Bacteroidetes, such as
Flavobacterium johnsoniae and Cytophaga hutchinsonii.
Knockouts of GldG abolish the gliding phenotype. GldG,
along with GldA and GldF are believed to compose an ABC
transporter and are observed as an operon. Gliding
motility appears closely linked to chitin utilization in
the model species Flavobacterium johnsoniae.
Bacteroidetes with members of this protein family appear
to have all of the genes associated with gliding
motility.
Length = 552
Score = 27.3 bits (61), Expect = 5.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 224 LLEAIQKLQINPEDTIAVGDGNNDLDMLRVAG 255
+AI KL E IAV GN +L L++A
Sbjct: 171 FADAISKLINPREKRIAVLKGNGELADLQIAD 202
>gnl|CDD|184712 PRK14501, PRK14501, putative bifunctional trehalose-6-phosphate
synthase/HAD hydrolase subfamily IIB; Provisional.
Length = 726
Score = 26.4 bits (59), Expect = 8.5
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 23 QIMQ--IVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSIIADKPIDLIIHRHENRRK 80
Q MQ + + W A D + L + +++ I + II R+ +
Sbjct: 438 QAMQERLRRYDVHKW-----ASDFLDELREAAEKNKAFASKPITPAAAEEIIARYRAASR 492
Query: 81 NLLIADMDST 90
LL+ D D T
Sbjct: 493 RLLLLDYDGT 502
>gnl|CDD|177855 PLN02205, PLN02205, alpha,alpha-trehalose-phosphate synthase
[UDP-forming].
Length = 854
Score = 26.5 bits (58), Expect = 8.8
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 224 LLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKI 272
LL +Q+ + P+ + +GD +D DM V + A P++A +A++
Sbjct: 770 LLSIMQERGMLPDFVLCIGDDRSDEDMFEVITSSM---AGPSIAPRAEV 815
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 26.5 bits (58), Expect = 8.9
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 55 HRSKILSIIADKPIDLIIHRHENRRKNLLIADMD------STMIEQECID--ELADLIGI 106
H S + I D+ + +I R+ NR + LL +MD +++ E ID ++ DL+
Sbjct: 536 HMSDETARIIDQEVKALIERNYNRARQLLTDNMDILHAMKDALMKYETIDAPQIDDLMAR 595
Query: 107 KE 108
++
Sbjct: 596 RD 597
>gnl|CDD|162209 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1, the latter of which is
modelled by TIGR01522.
Length = 917
Score = 26.3 bits (58), Expect = 9.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 225 LEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQA 270
E ++ LQ E GDG ND L+ A G+A + +AK+A
Sbjct: 620 SELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMGSGTEVAKEA 665
>gnl|CDD|148965 pfam07651, ANTH, ANTH domain. AP180 is an endocytotic accessory
proteins that has been implicated in the formation of
clathrin-coated pits. The domain is involved in
phosphatidylinositol 4,5-bisphosphate binding and is a
universal adaptor for nucleation of clathrin coats.
Length = 276
Score = 26.5 bits (59), Expect = 9.4
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 25/114 (21%)
Query: 87 MDSTMIEQECIDELADLIG--IKEKVSLITARAMNGEI---PFQDSLRERISLFKGTSTK 141
S + I +L L+ +K K T A+ E ++E L+ +
Sbjct: 148 TMSMEDLLDIIPKLQKLLDRLLKCKP---TGNALTNECIIAALILLIKESFGLYG-AINE 203
Query: 142 IIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYY 195
I +LL K + + A L I+ RF++Q ++Y
Sbjct: 204 GIINLLSK-----------FFELSKPDADAAL-----GIYKRFVSQFERLKEFY 241
>gnl|CDD|180482 PRK06233, PRK06233, hypothetical protein; Provisional.
Length = 372
Score = 26.2 bits (58), Expect = 10.0
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 162 HTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPI 214
H + N ST L +GG+ A+++ Q L +D + F+E D+ +G EP+
Sbjct: 242 HICRGNFKSTYLFSGGYEPVAKYLGQ-LNYDGF----FLEYDNDRSGS-FEPL 288
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.139 0.390
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,902,670
Number of extensions: 325101
Number of successful extensions: 778
Number of sequences better than 10.0: 1
Number of HSP's gapped: 770
Number of HSP's successfully gapped: 87
Length of query: 297
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 204
Effective length of database: 3,984,929
Effective search space: 812925516
Effective search space used: 812925516
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)