RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB
[Candidatus Liberibacter asiaticus str. psy62]
(297 letters)
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural
genomics, PSI, protein STRU initiative, nysgrc; 2.30A
{Vibrio cholerae}
Length = 335
Score = 231 bits (590), Expect = 2e-61
Identities = 77/208 (37%), Positives = 120/208 (57%), Gaps = 1/208 (0%)
Query: 78 RRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKG 137
+ L++ DMDST I+ ECIDE+A L G+ E+V+ +T RAM GE+ F+ SLR R+S K
Sbjct: 105 TKPGLIVLDMDSTAIQIECIDEIAKLAGVGEEVAEVTERAMQGELDFEQSLRLRVSKLKD 164
Query: 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYAN 197
+I+ + E + P ELV T+ G + +GGF+ F+ ++ + L D +N
Sbjct: 165 APEQILSQVRET-LPLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSN 223
Query: 198 RFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYG 257
+LTGQV+ ++ K+ ILL Q+ + +T+AVGDG NDL M+ AG G
Sbjct: 224 TLEIVSGKLTGQVLGEVVSAQTKADILLTLAQQYDVEIHNTVAVGDGANDLVMMAAAGLG 283
Query: 258 VAFHAKPALAKQAKIRIDHSDLEALLYI 285
VA+HAKP + +A+ + + L ++ I
Sbjct: 284 VAYHAKPKVEAKAQTAVRFAGLGGVVCI 311
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics,
structural genomics center for infectious disease,
hydrolas; 2.05A {Mycobacterium avium}
Length = 415
Score = 196 bits (499), Expect = 5e-51
Identities = 82/240 (34%), Positives = 136/240 (56%), Gaps = 3/240 (1%)
Query: 56 RSKILSIIADKPIDLIIHRHE--NRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLI 113
R+ + + +++ +D+ + + R K L++ D+DST+++ E I+ LA G + +V+ I
Sbjct: 159 RTALNRVSSEEHVDVAVEDYTLERRAKRLIVFDVDSTLVQGEVIEMLAAKAGAEGQVAAI 218
Query: 114 TARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLL 173
T AM GE+ F SL++R++ G +ID + + + PG + T+++ G + +
Sbjct: 219 TDAAMRGELDFAQSLQQRVATLAGLPATVIDEVAGQ-LELMPGARTTLRTLRRLGYACGV 277
Query: 174 VTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQI 233
V+GGF +A+ L D AN D LTG+V+ PIID K+ L E Q+ +
Sbjct: 278 VSGGFRRIIEPLAEELMLDYVAANELEIVDGTLTGRVVGPIIDRAGKATALREFAQRAGV 337
Query: 234 NPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEALLYIQGYKKDEI 293
T+AVGDG ND+DML AG G+AF+AKPAL + A + H L+ +L++ G + EI
Sbjct: 338 PMAQTVAVGDGANDIDMLAAAGLGIAFNAKPALREVADASLSHPYLDTVLFLLGVTRGEI 397
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine
phosphatase, protein structure initiative, structural
genomics; 2.40A {Helicobacter pylori}
Length = 217
Score = 161 bits (408), Expect = 2e-40
Identities = 68/209 (32%), Positives = 106/209 (50%), Gaps = 2/209 (0%)
Query: 80 KNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTS 139
+ L + D DST++ E I+ LA G+ ++V IT +AMNGE F SL R+S K
Sbjct: 4 QKLAVFDFDSTLVNAETIESLARAWGVFDEVKTITLKAMNGETDFHKSLILRVSKLKNMP 63
Query: 140 TKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRF 199
K+ + E + G ELV +K+ + +GGF + L D ++N
Sbjct: 64 LKLAKEVCES-LPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTL 122
Query: 200 IEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
I ++D L G V ++ +K ++LL + L I+ +T+ VGDG NDL M + A +A
Sbjct: 123 IVENDALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIA 182
Query: 260 FHAKPALAKQAKIRIDHSDLEALLY-IQG 287
F+AK L + A I+ DL + I+G
Sbjct: 183 FNAKEVLKQHATHCINEPDLALIKPLIEG 211
>1rku_A Homoserine kinase; phosphoserine phosphatase,
phosphoserine:homoserine phosphotransferase, THRH,
phosphoserine phosphoryl donor; 1.47A {Pseudomonas
aeruginosa PAO1} SCOP: c.108.1.11 PDB: 1rkv_A
Length = 206
Score = 128 bits (323), Expect = 1e-30
Identities = 31/206 (15%), Positives = 65/206 (31%), Gaps = 15/206 (7%)
Query: 81 NLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTST 140
+ D++ ++ E A+ GI + +++R+ +
Sbjct: 3 EIACLDLEGVLV-PEIWIAFAEKTGIDA-----LKATTRDIPDYDVLMKQRLRILDEHGL 56
Query: 141 KIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFI 200
K+ D G + ++++ F F++ + + LGF ++
Sbjct: 57 KLGDIQEVIATLKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPTLLCHKLE 116
Query: 201 EKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF 260
D D + ++ + IA GD ND ML A G+ F
Sbjct: 117 IDDSDRVVGYQLRQKDPKRQ------SVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILF 170
Query: 261 HAKPALAKQAK---IRIDHSDLEALL 283
HA + ++ + DL+
Sbjct: 171 HAPENVIREFPQFPAVHTYEDLKREF 196
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle,
B-hairpin, structural genomics, BSGC structure funded by
NIH; 1.48A {Methanocaldococcus jannaschii} SCOP:
c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Length = 211
Score = 127 bits (319), Expect = 3e-30
Identities = 84/209 (40%), Positives = 124/209 (59%), Gaps = 1/209 (0%)
Query: 77 NRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFK 136
++K L++ D DST++ E IDE+A G++E+V IT AM G++ F+ SLR+R+SL K
Sbjct: 2 EKKKKLILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLK 61
Query: 137 GTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYA 196
+ ++ + K+IT G E + +K G +V+GGF I I + LG D +A
Sbjct: 62 DLPIEKVEKAI-KRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFA 120
Query: 197 NRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGY 256
NR I KD +LTG V ++ AK +IL + + IN EDT+AVGDG ND+ M + AG
Sbjct: 121 NRLIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGL 180
Query: 257 GVAFHAKPALAKQAKIRIDHSDLEALLYI 285
+AF AKP L ++A I I+ DL +L
Sbjct: 181 KIAFCAKPILKEKADICIEKRDLREILKY 209
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 119 bits (299), Expect = 6e-28
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 6/212 (2%)
Query: 78 RRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKG 137
+ + D+DST+I +E IDELA + G+++ VS +T RAM G +PF+ +L ER++L +
Sbjct: 12 YSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTERLALIQP 71
Query: 138 TSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFD--QYY 195
+ ++ + E+ PG ELV +++ L++GGF +A L +
Sbjct: 72 SREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVF 131
Query: 196 ANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAG 255
ANR + E + + + + K + + + I +GDG D++ A
Sbjct: 132 ANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKFHFKKIIMIGDGATDMEACPPAD 191
Query: 256 YGVAFHAKPAL---AKQAKIRIDH-SDLEALL 283
+ F AK I +L L
Sbjct: 192 AFIGFGGNVIRQQVKDNAKWYITDFVELLGEL 223
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein structure initiative; 2.10A
{Bordetella pertussis}
Length = 232
Score = 118 bits (296), Expect = 1e-27
Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 19/213 (8%)
Query: 80 KNLLIADMDSTMIEQECIDELA----------DLIGIKEKVSLITARAMNGEIPFQDSLR 129
+ L + D+D T++ + + A D + + + R GE+ + +
Sbjct: 4 RRLALFDLDHTLLPLDSDYQWADFLARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAE 63
Query: 130 ERISLFKGTSTKIIDSLLEK------KITYNPGGYELVHTMKQNGASTLLVTGGFSIFAR 183
+ L S + + E+ + + ++V G LVT S
Sbjct: 64 FMLGLLAAHSPVELAAWHEEFMRDVIRPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTA 123
Query: 184 FIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPED---TIA 240
IA+ G A +D R TG++ K + + + + + D +
Sbjct: 124 PIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMGLALGDFAESYF 183
Query: 241 VGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIR 273
D ND+ +L +A + P L + A+ R
Sbjct: 184 YSDSVNDVPLLEAVTRPIAANPSPGLREIAQAR 216
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase;
2633731, structural genomics, joint center for
structural genomics, JCSG; HET: MSE; 2.00A {Bacillus
subtilis} SCOP: c.108.1.20
Length = 236
Score = 110 bits (274), Expect = 6e-25
Identities = 27/219 (12%), Positives = 67/219 (30%), Gaps = 6/219 (2%)
Query: 77 NRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFK 136
RK +I D D T+ + I + + + ++ + ++ + L
Sbjct: 3 TTRKPFIICDFDGTITMNDNIINIMKTFA-PPEWMALKDGVLSKTLSIKEGVGRMFGLLP 61
Query: 137 GTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYA 196
+ + I S + + G E V + ++ +++GG F + + +
Sbjct: 62 SSLKEEITSFVLEDAKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEKDRIY 121
Query: 197 NRFIEKDD---RLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRV 253
D+ + I +L + I +GD D++ ++
Sbjct: 122 CNHASFDNDYIHIDWPHSCKGTCSNQCGCCKPSVIHELSEPNQYIIMIGDSVTDVEAAKL 181
Query: 254 AGYGVAFHAKPALAKQAKIRIDHSD--LEALLYIQGYKK 290
+ A ++ + E I+ K+
Sbjct: 182 SDLCFARDYLLNECREQNLNHLPYQDFYEIRKEIENVKE 220
>1y8a_A Hypothetical protein AF1437; structural genomics, protein structure
initiative, PSI, midwest center for structural genomics,
MCSG; 1.40A {Archaeoglobus fulgidus dsm 4304} SCOP:
c.108.1.24
Length = 332
Score = 107 bits (268), Expect = 3e-24
Identities = 31/260 (11%), Positives = 74/260 (28%), Gaps = 55/260 (21%)
Query: 78 RRKNLLIADMDSTMIEQECIDELA----------DLIGIKEKVSLITARAMNGEIPFQDS 127
+ ++ D + I + EL + + R E +
Sbjct: 19 FQGHMFFTDWEGPWILTDFALELCMAVFNNARFFSNLSEYDDYLAYEVRREGYEAGYTLK 78
Query: 128 LRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQ 187
L G + ++ + E + P + + T+++ ++++ ++ + R A
Sbjct: 79 LLTPFLAAAGVKNRDVERIAELSAKFVPDAEKAMATLQERWT-PVVISTSYTQYLRRTAS 137
Query: 188 HLGFDQYYANRFIEKDD--------RLTGQVMEPIID----------------------- 216
+G ++ D +++ I
Sbjct: 138 MIGVRGELHGTEVDFDSIAVPEGLREELLSIIDVIASLSGEELFRKLDELFSRSEVRKIV 197
Query: 217 -------GTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVA----GYGVAFHAKPA 265
K++I+ + I+ + VGD +D M A G +AF+
Sbjct: 198 ESVKAVGAGEKAKIMRGYCESKGIDF--PVVVGDSISDYKMFEAARGLGGVAIAFNGNEY 255
Query: 266 LAKQAKIRIDHSDLEALLYI 285
K A + I + +
Sbjct: 256 ALKHADVVIISPTAMSEAKV 275
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid,
structural genomics; 1.70A {Francisella tularensis
subsp}
Length = 219
Score = 103 bits (258), Expect = 4e-23
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 13/214 (6%)
Query: 82 LLIADMDSTMIEQECIDE-----LADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFK 136
+I D DST+I++E ++ L +++ IT M G+I F+DSL++R+++
Sbjct: 6 NIIFDFDSTLIKKESLELILEPILQKSPAKLKEIEYITNLGMQGDISFRDSLQKRLAIAS 65
Query: 137 GTSTKIID-SLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYY 195
T I + S G ELV +K G + +GG S + A +L +
Sbjct: 66 PTKQSIKEFSNKYCPNLLTDGIKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNIPREN 125
Query: 196 ANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLR--V 253
+E G E A L + + + IA+GDG D +
Sbjct: 126 IFA-VETIWNSDGSFKELDNSNGACDSKLSAFDKAKGLIDGEVIAIGDGYTDYQLYEKGY 184
Query: 254 AGYGVAF---HAKPALAKQAKIRIDH-SDLEALL 283
A +A+ + + +K + ++L +L+
Sbjct: 185 ATKFIAYMEHIEREKVINLSKYVARNVAELASLI 218
>1l6r_A Hypothetical protein TA0175; structural genomics, putative
hydrolase, midwest center for structural genomics, MCSG,
PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10
PDB: 1kyt_A
Length = 227
Score = 73.4 bits (179), Expect = 6e-14
Identities = 32/214 (14%), Positives = 71/214 (33%), Gaps = 10/214 (4%)
Query: 82 LLIADMDSTM------IEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLF 135
L D+D + I + I+ + VSL++ + + L +F
Sbjct: 7 LAAIDVDGNLTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGPVF 66
Query: 136 KGTSTKIID-SLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQY 194
+ D KK N G + + M + + ++T + + Y
Sbjct: 67 GENGGIMFDNDGSIKKFFSNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDIDPEDVDY 126
Query: 195 YANRFIEKDD--RLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLR 252
+ +G + G K+ + + + + ++ + +GD NND+ M +
Sbjct: 127 VRKEAESRGFVIFYSGYSWHLMNRGEDKAFAVNKLKEMYSLEYDEILVIGDSNNDMPMFQ 186
Query: 253 VAGYGVAF-HAKPALAKQAKIRIDHSDLEALLYI 285
+ +A + + D+S E + I
Sbjct: 187 LPVRKACPANATDNIKAVSDFVSDYSYGEEIGQI 220
>2g09_A Cytosolic 5'-nucleotidase III; uniprot Q9D020, UMPH-1, pyrimidine
5'-nucleotidase 1, P5N-1, NT5C3 protein, AAH38029,
BC038029, MM.158936; HET: PIN; 2.10A {Mus musculus} PDB:
2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A
2vkq_A 2cn1_A
Length = 297
Score = 70.6 bits (172), Expect = 4e-13
Identities = 28/206 (13%), Positives = 58/206 (28%), Gaps = 32/206 (15%)
Query: 78 RRKNLLIADMDSTMIEQECIDELADLIG------------IKEKVSLITARAMNGEIPFQ 125
K +I D D T+ + + K+ + + E+
Sbjct: 41 AAKLQIITDFDMTLSRFSYNGKRCPTCHNIIDNCKLVTDECRRKLLQLKEQYYAIEVDPV 100
Query: 126 DSLRERISLFKGTSTKIIDSLLEKKIT--------------YNPGGYELVHTMKQNGAST 171
++ E+ TK L+E+ I G ++Q+G
Sbjct: 101 LTVEEKFPYMVEWYTKSHGLLIEQGIPKAKLKEIVADSDVMLKEGYENFFGKLQQHGIPV 160
Query: 172 LLVTGGFSIFARFIAQHLGFD----QYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEA 227
+ + G + + G + +N ++ + +I K L+
Sbjct: 161 FIFSAGIGDVLEEVIRQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFNKHDGALKN 220
Query: 228 IQKLQI--NPEDTIAVGDGNNDLDML 251
+ + I +GD DL M
Sbjct: 221 TDYFSQLKDNSNIILLGDSQGDLRMA 246
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolase, structural genomics; HET:
MSE; 2.10A {Clostridium difficile 630}
Length = 274
Score = 64.7 bits (156), Expect = 2e-11
Identities = 38/261 (14%), Positives = 76/261 (29%), Gaps = 57/261 (21%)
Query: 82 LLIADMDSTM------IEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLR------ 129
LLI D+D T+ I + + V + T R+M SL
Sbjct: 7 LLILDIDGTLRDEVYGIPESAKHAIRLCQKNHCSVVICTGRSMGTIQDDVLSLGVDGYIA 66
Query: 130 -------------ERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTG 176
S + +++ L ++++ ++ E V ++ +
Sbjct: 67 GGGNYIQYHGELLYNQSFNQRLIKEVVCLLKKREVAFSIESQEKVFMNQKAKEIFETMNQ 126
Query: 177 GFSIFARFIAQHLGFDQYYANRFIEKDD-------------------------------R 205
+ QH+ Y N E
Sbjct: 127 LKGTNSCINKQHIQEKITYENNIEEYKSQDIHKICLWSNEKVFDEVKDILQDKMELAQRD 186
Query: 206 LTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKP 264
++ Q E I K + + ++L + ++TI GDG ND+ M + + +A ++
Sbjct: 187 ISSQYYEIIQKDFHKGKAIKRLQERLGVTQKETICFGDGQNDIVMFQASDVTIAMKNSHQ 246
Query: 265 ALAKQAKIRIDHSDLEALLYI 285
L A + +
Sbjct: 247 QLKDIATSICEDIFDNGIYKE 267
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily,
cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10
PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A*
2b1r_A* 2d2v_A*
Length = 244
Score = 64.7 bits (156), Expect = 2e-11
Identities = 35/224 (15%), Positives = 76/224 (33%), Gaps = 21/224 (9%)
Query: 79 RKNLLIADMDSTMI-EQECIDELADLIGIKEK---VSLITARAMNGEIPFQDSLRERISL 134
R+ LLI+D+D+T + +Q+ ++ L + +G + ++ T R+ + Q +
Sbjct: 2 RQLLLISDLDNTWVGDQQALEHLQEYLGDRRGNFYLAYATGRSYHSARELQKQVGLMEPD 61
Query: 135 FKGTS-------TKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQ 187
+ T+ + +D ++ + L A + +
Sbjct: 62 YWLTAVGSEIYHPEGLDQHWADYLSEHWQRDILQAIADGFEALKPQSPLEQNPWKISYHL 121
Query: 188 HLGFDQYYANRFIEK---------DDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDT 238
++ E +G+ ++ + + K Q L + P T
Sbjct: 122 DPQACPTVIDQLTEMLKETGIPVQVIFSSGKDVDLLPQRSNKGNATQYLQQHLAMEPSQT 181
Query: 239 IAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSDLEA 281
+ GD ND+ + + GV +A+P L D A
Sbjct: 182 LVCGDSGNDIGLFETSARGVIVRNAQPELLHWYDQWGDSRHYRA 225
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; IDP02274,
hydrolase, lipopolysaccharide biosynthesis, magnesium,
structural genomics; 1.95A {Yersinia pestis CO92}
Length = 211
Score = 63.0 bits (153), Expect = 7e-11
Identities = 29/167 (17%), Positives = 48/167 (28%), Gaps = 30/167 (17%)
Query: 123 PFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYEL----------VHTMKQNGASTL 172
P D + +R + + + + + I G EL + + +
Sbjct: 37 PVADDVIQRAANIRLLICDVDGVMSDGLIYMGNQGEELKAFNVRDGYGIRCLITSDIDVA 96
Query: 173 LVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQ 232
++TG + A LG Y + K E + LQ
Sbjct: 97 IITGRRAKLLEDRANTLGITHLYQG-------------------QSDKLVAYHELLATLQ 137
Query: 233 INPEDTIAVGDGNNDLDMLRVAGYGVA-FHAKPALAKQAKIRIDHSD 278
PE +GD D ++ G VA A P L +A
Sbjct: 138 CQPEQVAYIGDDLIDWPVMAQVGLSVAVADAHPLLLPKAHYVTRIKG 184
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomics; 1.60A {Pyrococcus
horikoshii OT3} SCOP: c.108.1.10
Length = 231
Score = 57.3 bits (137), Expect = 4e-09
Identities = 33/216 (15%), Positives = 67/216 (31%), Gaps = 12/216 (5%)
Query: 82 LLIADMDSTM------IEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLF 135
+ D+D T+ I ++ ++ + + + L+T + + +
Sbjct: 5 AISIDIDGTITYPNRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSGPVV 64
Query: 136 KGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYY 195
I + + L + +++ + A + +
Sbjct: 65 AEDGGAISYKKKRIFLASMDEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVET 124
Query: 196 ANRFIEKDD-----RLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDM 250
I + + +G + K + +A + L I P++ VGDG NDLD
Sbjct: 125 VREIINELNLNLVAVDSGFAIHVKKPWINKGSGIEKASEFLGIKPKEVAHVGDGENDLDA 184
Query: 251 LRVAGYGVAF-HAKPALAKQAKIRIDHSDLEALLYI 285
+V GY VA A L + A E
Sbjct: 185 FKVVGYKVAVAQAPKILKENADYVTKKEYGEGGAEA 220
>3dao_A Putative phosphatse; RER070207001050, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE 1PE CIT; 1.80A {Eubacterium
rectale}
Length = 283
Score = 56.2 bits (134), Expect = 9e-09
Identities = 33/256 (12%), Positives = 63/256 (24%), Gaps = 52/256 (20%)
Query: 82 LLIADMDSTM-------IEQECIDELADLIGIKEKVSLITARAMNGEIPF---------- 124
L+ D+D T+ I+ E + + LI + + R + E
Sbjct: 23 LIATDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCSGRQFSSEFKLFAPIKHKLLY 82
Query: 125 ---------------------QDSLRERISLFKGTSTKIIDSLLEKKITY--NPGGYELV 161
+D + + + + + G
Sbjct: 83 ITDGGTVVRTPKEILKTYPMDEDIWKGMCRMVRDELPACDYFAATPDFCFAEDGGSPIFH 142
Query: 162 HTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDR----------LTGQVM 211
G V + I + F G+
Sbjct: 143 LLRDSYGFEMREVDDITRLDRNDIIKFTVFHPDKCEELCTPVFIPAWNKKAHLAAAGKEW 202
Query: 212 EPIIDGTAKS-QILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQ 269
L I + + P++ GD ND++ML+ AG A +A+ +
Sbjct: 203 VDCNAKGVSKWTALSYLIDRFDLLPDEVCCFGDNLNDIEMLQNAGISYAVSNARQEVIAA 262
Query: 270 AKIRIDHSDLEALLYI 285
AK +L +
Sbjct: 263 AKHTCAPYWENGVLSV 278
>3niw_A Haloacid dehalogenase-like hydrolase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.90A
{Bacteroides thetaiotaomicron}
Length = 279
Score = 54.0 bits (129), Expect = 4e-08
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 210 VMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAK 268
+E + G K+ L ++ + + E+ IA+GDG NDL M++ AG GVA +A+ + K
Sbjct: 188 FLELVPQGIDKALSLSVLLENIGMTREEVIAIGDGYNDLSMIKFAGMGVAMGNAQEPVKK 247
Query: 269 QAKIRIDHSD-------LEALLYIQG 287
A +D +E + ++G
Sbjct: 248 AADYITLTNDEDGVAEAIERIFNVEG 273
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 54.1 bits (129), Expect = 4e-08
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 217 GTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRID 275
+K Q L ++L I E+T AVGD ND ML AG GVA +A+ + A
Sbjct: 214 KASKGQALKRLAKQLNIPLEETAAVGDSLNDKSMLEAAGKGVAMGNAREDIKSIADAVTL 273
Query: 276 HSDLEALLYI 285
+D + ++
Sbjct: 274 TNDEHGVAHM 283
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like hydrolase; 2.45A
{Bacillus subtilis subsp}
Length = 289
Score = 53.9 bits (128), Expect = 4e-08
Identities = 39/273 (14%), Positives = 71/273 (26%), Gaps = 59/273 (21%)
Query: 77 NRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPF----QDSLRERI 132
+ ++ D D T ++ I E + ++ +GE+ S+ +
Sbjct: 19 EHPQYIVFCDFDETYFPHTIDEQ--KQQDIYELEDYLEQKSKDGELIIGWVTGSSIESIL 76
Query: 133 SLFK-----------------------GTSTKIIDSLLEKKI------------------ 151
+ D+ +I
Sbjct: 77 DKMGRGKFRYFPHFIASDLGTEITYFSEHNFGQQDNKWNSRINEGFSKEKVEKLVKQLHE 136
Query: 152 ----TYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKD---D 204
NP K N I + N D
Sbjct: 137 NHNILLNPQTQLGKSRYKHNFYYQEQDEINDKKNLLAIEKICEEYGVSVNINRCNPLAGD 196
Query: 205 RLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAK 263
++ I GT K++I+ ++K +N E IA GD ND+ ML+ G G +A
Sbjct: 197 PEDSYDVDFIPIGTGKNEIVTFMLEKYNLNTERAIAFGDSGNDVRMLQTVGNGYLLKNAT 256
Query: 264 PALAKQAKIRIDHSD----LEALLYIQGYKKDE 292
+ D L + G+ + +
Sbjct: 257 QEAKNLHNLITDSEYSKGITNTLKKLIGFMRRK 289
>3mmz_A Putative HAD family hydrolase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.84A {Streptomyces avermitilis}
Length = 176
Score = 53.7 bits (129), Expect = 5e-08
Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 31/140 (22%)
Query: 150 KITYNPGGYEL----------VHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRF 199
++ + G E + ++++G + L+++ + A+ L +
Sbjct: 27 RVLIDSDGREFVSVHRGDGLGIAALRKSGLTMLILSTEQNPVVAARARKLKIPVLH---- 82
Query: 200 IEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
K L + ++ I PE + VG+ NDL + G+ VA
Sbjct: 83 ----------------GIDRKDLALKQWCEEQGIAPERVLYVGNDVNDLPCFALVGWPVA 126
Query: 260 -FHAKPALAKQAKIRIDHSD 278
A + A+
Sbjct: 127 VASAHDVVRGAARAVTTVPG 146
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.60A {Pseudomonas fluorescens}
Length = 205
Score = 53.1 bits (127), Expect = 8e-08
Identities = 41/205 (20%), Positives = 65/205 (31%), Gaps = 20/205 (9%)
Query: 86 DMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDS 145
DMD T+ + D I+E +S+ + + +L S K +
Sbjct: 12 DMDGTLT-----IAVHDFAAIREALSIPAEDDILTHL---AALPADESAAKHAWLLEHER 63
Query: 146 LLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDR 205
L + PG ELV + G ++T A + +G +A
Sbjct: 64 DLAQGSRPAPGAVELVRELAGRGYRLGILTRNARELAHVTLEAIGLADCFAEAD------ 117
Query: 206 LTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGY---GVAFHA 262
+ LL+ + ++P + VGD DLD R AG V
Sbjct: 118 ---VLGRDEAPPKPHPGGLLKLAEAWDVSPSRMVMVGDYRFDLDCGRAAGTRTVLVNLPD 174
Query: 263 KPALAKQAKIRIDHSDLEALLYIQG 287
P D + L LL +G
Sbjct: 175 NPWPELTDWHARDCAQLRDLLSAEG 199
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron vpi-5482}
SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 51.8 bits (123), Expect = 2e-07
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 192 DQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDML 251
+ + + R + G K + + E I+ I E+T++ GDG ND+ ML
Sbjct: 160 KEVLPSIPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISML 219
Query: 252 RVAGYGVAF-HAKPALAKQAKIRIDHSDLEALLY 284
R A GVA AK + A D + +
Sbjct: 220 RHAAIGVAMGQAKEDVKAAADYVTAPIDEDGISK 253
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 52.1 bits (124), Expect = 2e-07
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 211 MEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQ 269
+E + +K L E + +L + +D + +GD NDL M++ AG GVA +A + +
Sbjct: 189 IEVMNRRASKGGTLSELVDQLGLTADDVMTLGDQGNDLTMIKYAGLGVAMGNAIDEVKEA 248
Query: 270 AKIRIDHSD 278
A+ +
Sbjct: 249 AQAVTLTNA 257
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 51.9 bits (123), Expect = 2e-07
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 211 MEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQ 269
+E + K + L I PE+ +A+GD ND+ M+ AG GVA +A P++ +
Sbjct: 190 LEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDNAIPSVKEV 249
Query: 270 AKIRIDHSDLEALLYI 285
A + + + +
Sbjct: 250 ANFVTKSNLEDGVAFA 265
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 50.4 bits (119), Expect = 5e-07
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 211 MEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQ 269
E G K + ++ I+ + + VGD ND+ ML Y A +A +
Sbjct: 216 AEVTKLGHDKYTGINYLLKHYNISNDQVLVVGDAENDIAMLSNFKYSFAVANATDSAKSH 275
Query: 270 AKIRIDHSDLE 280
AK + S E
Sbjct: 276 AKCVLPVSHRE 286
>3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein
structure initiative, midwest center for structural
genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 50.3 bits (119), Expect = 6e-07
Identities = 45/264 (17%), Positives = 89/264 (33%), Gaps = 58/264 (21%)
Query: 80 KNLLIADMDSTM------IEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERIS 133
K LL ++D + I Q D + + V+L+T R SL+
Sbjct: 6 KQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAK 65
Query: 134 LFKGTSTKIIDS---LLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIA---- 186
L + I + +K + + +V ++ + L+ +SI +
Sbjct: 66 LITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESYQCNIRLLHEKYSIGNKKKVNSNL 125
Query: 187 -----QHLGFDQYYANRFIEKDDRL----------------------------------- 206
H +Y +F+E L
Sbjct: 126 LGKALIHPSDPIFYPVQFVESLSDLLMDEPVSAPVIEVYTEHDIQHDITETITKAFPAVD 185
Query: 207 ----TGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-H 261
+ + + G +K L +L ++ +D +A+G +DL M+ +AG GVA +
Sbjct: 186 VIRVNDEKLNIVPKGVSKEAGLALVASELGLSMDDVVAIGHQYDDLPMIELAGLGVAMGN 245
Query: 262 AKPALAKQAKIRIDHSDLEALLYI 285
A P + ++A +D + + Y+
Sbjct: 246 AVPEIKRKADWVTRSNDEQGVAYM 269
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant 1; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ALS
collaborative crystallography; 1.90A {Ehrlichia
chaffeensis}
Length = 231
Score = 49.9 bits (118), Expect = 7e-07
Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 19/214 (8%)
Query: 78 RRKNLLIADMDSTM------IEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRER 131
++ +I D +T+ I++ ++ D +G K + + L +R
Sbjct: 23 KQPTAVIFDWYNTLIDTSINIDRTTFYQVLDQMGYKNIDLDSIPNSTIPKY-LITLLGKR 81
Query: 132 ISLFKGTSTKIID-SLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLG 190
++ S N G EL+ T+K+N + +V+ R H
Sbjct: 82 WKEATILYENSLEKSQKSDNFMLNDGAIELLDTLKENNITMAIVSNKNGERLRSEIHHKN 141
Query: 191 FDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINP-EDTIAVGDGNNDLD 249
Y+ + + +L A+ + I P ++ +GD +D+
Sbjct: 142 LTHYFDSIIG----------SGDTGTIKPSPEPVLAALTNINIEPSKEVFFIGDSISDIQ 191
Query: 250 MLRVAGYGVAFHAKPALAKQAKIRIDHSDLEALL 283
AG + + K + D+ +
Sbjct: 192 SAIEAGCLPIKYGSTNIIKDILSFKNFYDIRNFI 225
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function, NPPSFA; 2.60A
{Geobacillus kaustophilus HTA426} PDB: 2qyh_A
Length = 258
Score = 49.5 bits (117), Expect = 9e-07
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 208 GQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPAL 266
+ + G +K++ + I+KL I+ +D A GDG ND++ML G GVA +A +
Sbjct: 172 DVSTDVLPAGGSKAEGIRMMIEKLGIDKKDVYAFGDGLNDIEMLSFVGTGVAMGNAHEEV 231
Query: 267 AKQAKIRIDHSDLEALLYI 285
+ A D E + Y
Sbjct: 232 KRVADFVTKPVDKEGIWYG 250
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 49.3 bits (116), Expect = 9e-07
Identities = 18/164 (10%), Positives = 44/164 (26%), Gaps = 5/164 (3%)
Query: 121 EIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSI 180
++ ++ + KI + L + + Y Y + + +
Sbjct: 78 DVKGKEVGNYIVIELGIRVEKIREELKKLENIYGLKYYGNSTKEEIEKFTGMPPELVPLA 137
Query: 181 FARFIAQHLGFDQYYANRFIEKDDRLT----GQVMEPIIDGTAKSQILLEAIQKLQINPE 236
R ++ + + + + + + ++
Sbjct: 138 MEREYSETIFEWSRDGWEEVLVEGGFKVTMGSRFYTVHGNSDKGKAAKILLDFYKRLGQI 197
Query: 237 DTIAVGDGNNDLDMLRVAGYGVA-FHAKPALAKQAKIRIDHSDL 279
++ AVGD ND M V K A+ ID ++
Sbjct: 198 ESYAVGDSYNDFPMFEVVDKVFIVGSLKHKKAQNVSSIIDVLEV 241
>1nf2_A Phosphatase; structural proteomics, HAD family, NEW fold,
structural genomics, BSGC structure funded by NIH,
protein structure initiative; 2.20A {Thermotoga
maritima} SCOP: c.108.1.10
Length = 268
Score = 49.2 bits (116), Expect = 1e-06
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 211 MEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQ 269
+E + K + L +++ E+ + GD NDL M AG VA +A + +
Sbjct: 182 LEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAIEKVKEA 241
Query: 270 AKIRIDHSDLEALLYI 285
+ I ++ + Y+
Sbjct: 242 SDIVTLTNNDSGVSYV 257
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 48.2 bits (114), Expect = 2e-06
Identities = 30/140 (21%), Positives = 48/140 (34%), Gaps = 9/140 (6%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYAN----RFIEKDDRLTGQV 210
Y+ V K G S ++TG AR ++ LG N D +V
Sbjct: 538 HDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEV 597
Query: 211 MEPIIDGTAKSQIL----LEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPAL 266
+ + +++ ++ LQ GDG ND L+ A G+A
Sbjct: 598 YDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDA 657
Query: 267 AKQ-AKIRIDHSDLEALLYI 285
A+ A I L A++
Sbjct: 658 ARSAADIVFLAPGLGAIIDA 677
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 47.6 bits (113), Expect = 4e-06
Identities = 67/368 (18%), Positives = 116/368 (31%), Gaps = 143/368 (38%)
Query: 3 LIATLITHRSHPILNISLVKQIMQIVNSSIFY--------WLADSIAC-D--------II 45
L+ LI S L+ L++ + ++ + WL + D I
Sbjct: 183 LVGDLI-KFSAETLS-ELIRTTL---DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 46 LPLEGMID--HHR--SKILSIIADKPIDLIIHRHENRRKNL--------------LIADM 87
PL G+I H+ +K+L P +L R L IA+
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGF---TPGEL--------RSYLKGATGHSQGLVTAVAIAET 286
Query: 88 DSTMIEQECIDELADLIGIKEKVSL---ITAR----AMNGEIP---FQDSLRERISLFKG 137
DS E ++ +++ I R N +P +DSL +G
Sbjct: 287 DS----WESFFVSV-----RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN----EG 333
Query: 138 TST--------------KIIDSL---L--EKKITYNPGGYELVHTMKQNGASTLLVTG-- 176
+ ++ L K++ LV NGA L+V+G
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-----EISLV-----NGAKNLVVSGPP 383
Query: 177 ----GFSIFARFIAQHLGFDQYYANR--FIEKDDRLTGQVMEPIIDGTA--KSQILLEAI 228
G ++ R G DQ +R F E+ + + + + P+ + S +L+ A
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQ---SRIPFSERKLKFSNRFL-PV---ASPFHSHLLVPAS 436
Query: 229 QKLQ---------INPED-TIAV---GDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRID 275
+ N +D I V DG++ LRV ++ + I
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSD----LRVLSGSIS----ERIVDC--IIRL 486
Query: 276 HSDLEALL 283
E
Sbjct: 487 PVKWETTT 494
Score = 34.1 bits (78), Expect = 0.038
Identities = 69/383 (18%), Positives = 120/383 (31%), Gaps = 141/383 (36%)
Query: 1 MALIATLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDI---ILPLEGMIDHHRS 57
+ +++L+ S ++ + + L + DI L D
Sbjct: 65 LGYVSSLV-EPSKVGQFDQVLNLCLTEFENCY---LEGN---DIHALAAKLLQENDTTLV 117
Query: 58 KILSII---------ADKPIDLIIHRHENRRKNLL--IADMDSTM---------IEQECI 97
K +I A +P D + + L + + ++ + + +
Sbjct: 118 KTKELIKNYITARIMAKRPFD---KKSNS---ALFRAVGEGNAQLVAIFGGQGNTD-DYF 170
Query: 98 DELADL-------IGIKEKVSLITARAMNGEIPFQDSLRE---RISLF-KG--------- 137
+EL DL +G LI A + +R +F +G
Sbjct: 171 EELRDLYQTYHVLVG-----DLIKFSAET----LSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 138 -TSTKIIDSLLEKKITYNP--GGYELVH---TMKQNGAS-----TLL--VTG---GFSIF 181
++T D LL I+ P G +L H T K G + + L TG G +
Sbjct: 222 PSNTPDKDYLLSIPISC-PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL-VT 279
Query: 182 ARFIAQHLGFDQYYANR--------FIEKDDRLTG---------QVMEPII--D------ 216
A IA+ ++ ++ + FI G + P I D
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFI-------GVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 217 GTAKSQIL------LEAIQKL--QIN---PEDT-IAVGDGNNDLDMLRVAG-----YGVA 259
G S +L E +Q + N P + + N L V+G YG+
Sbjct: 333 GVP-SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA-KNLVVSGPPQSLYGLN 390
Query: 260 FH---AK-PALAKQAKIRIDHSD 278
AK P+ Q+ RI S+
Sbjct: 391 LTLRKAKAPSGLDQS--RIPFSE 411
Score = 33.0 bits (75), Expect = 0.082
Identities = 37/157 (23%), Positives = 57/157 (36%), Gaps = 42/157 (26%)
Query: 175 TGGFSIFARFIAQHLGFDQYYANRFIEKDDRL----TGQVMEPIIDGTAKSQI------- 223
T GFSI I + ++ EK R+ + + E I+DG K++
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGG---EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 224 ------------LLEAIQKLQINPEDTIAVGDGNNDLDM-------LRVAGYGVAFHAKP 264
LL A Q Q P T+ DL AG+ + +A
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQ--PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA-- 1768
Query: 265 ALAKQAKIRIDHSDLEALLY----IQ-GYKKDEIVKS 296
ALA A + S +E + Y +Q +DE+ +S
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Score = 30.3 bits (68), Expect = 0.59
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 53 DHHRSKILSIIADKPIDLIIHRHENRRKNLLIADMDSTMIEQECID 98
D + IL I+ + P++L IH + K I + S MI + +D
Sbjct: 1655 DTYGFSILDIVINNPVNLTIHFGGEKGKR--IRENYSAMIFETIVD 1698
Score = 29.1 bits (65), Expect = 1.1
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 78 RRKNLLIADMD---STMIEQECIDELADLIGIKEKVSLITARAMNGE--IPFQDSL-RER 131
+ K L+ AD ++ E + LAD++ I+ V ++ R M + +P +D L R
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVP-RDELGRSN 1806
Query: 132 ISLFKGTSTKIIDSLLEKKITY 153
+ ++ S ++ + Y
Sbjct: 1807 YGMIAINPGRVAASFSQEALQY 1828
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 47.0 bits (111), Expect = 5e-06
Identities = 31/163 (19%), Positives = 47/163 (28%), Gaps = 27/163 (16%)
Query: 148 EKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYY-ANRFIEKDDRL 206
E + L++ +K G + TG ++LG Y+ A+ D L
Sbjct: 211 EIILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDVL 270
Query: 207 TGQVMEPIIDGTAK----------------SQILLEAIQKLQINPEDTIAVGDGNNDLDM 250
+ M P K Q +N +D VGD DL
Sbjct: 271 EAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLS 330
Query: 251 LRVA---------GYGVAFHAKPALAKQAKIRIDH-SDLEALL 283
+ G A A A I+H +L +L
Sbjct: 331 AQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVL 373
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, cytoplasm,
detoxification, magnesium, metal-binding, peroxisome,
polymorphism; HET: 34N; 1.95A {Homo sapiens} PDB:
1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A*
Length = 555
Score = 45.7 bits (107), Expect = 1e-05
Identities = 32/214 (14%), Positives = 59/214 (27%), Gaps = 35/214 (16%)
Query: 83 LIADMDSTMIE---QECIDELADLIGI----------KEKVSLITARAMNGEIPFQD--- 126
+ D+D + + + + + K T R M GEI
Sbjct: 6 AVFDLDGVLALPAVFGVLGRTEEALALPRGLLNDAFQKGGPEGATTRLMKGEITLSQWIP 65
Query: 127 ---------SLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGG 177
S ++ L K S K I N + +++ G +T ++T
Sbjct: 66 LMEENCRKCSETAKVCLPKNFSIKEIFDKAISARKINRPMLQAALMLRKKGFTTAILTNT 125
Query: 178 FSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAK--SQILLEAIQKLQINP 235
+ F D + + G K QI + L+ +P
Sbjct: 126 WLDDRAERDGLAQLMCELKMHF---DFLIESCQV-----GMVKPEPQIYKFLLDTLKASP 177
Query: 236 EDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQ 269
+ + + D +L R G A +
Sbjct: 178 SEVVFLDDIGANLKPARDLGMVTILVQDTDTALK 211
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein
structure initiative, NYSG phosphatase; 1.80A
{Pseudomonas syringae PV} PDB: 3nrj_A
Length = 189
Score = 45.3 bits (107), Expect = 2e-05
Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 39/165 (23%)
Query: 150 KITYNPGGYELV----------HTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRF 199
++ + G E+ + +G +T +++G + A+ LG + + R
Sbjct: 34 RLYFMEDGSEIKTFNTLDGQGIKMLIASGVTTAIISGRKTAIVERRAKSLGIEHLFQGR- 92
Query: 200 IEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
K +L + + +LQ+ E +GD DL ++R G G+A
Sbjct: 93 ------------------EDKLVVLDKLLAELQLGYEQVAYLGDDLPDLPVIRRVGLGMA 134
Query: 260 -FHAKPALAKQAKIRIDHSD--------LEALLYIQGYKKDEIVK 295
+A + + A E +L QG +
Sbjct: 135 VANAASFVREHAHGITRAQGGEGAAREFCELILSAQG-NLEAAHS 178
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A
{Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A*
2hf2_A
Length = 271
Score = 45.0 bits (105), Expect = 2e-05
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 214 IIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKI 272
II G K+ + +++ ++P++ +A+GD ND +ML++A Y A +A + + A+
Sbjct: 186 IIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARY 245
Query: 273 RIDHSDLEALLYI 285
D ++ E L +
Sbjct: 246 ATDDNNHEGALNV 258
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Bacteroides
fragilis nctc 9343}
Length = 225
Score = 44.5 bits (104), Expect = 3e-05
Identities = 31/223 (13%), Positives = 69/223 (30%), Gaps = 34/223 (15%)
Query: 82 LLIADMDSTMIE-----QECIDELADLIGIKEKVSLITARAMNG-------EIPFQDSLR 129
+ + D D T+ + C + + G ++ + G I +
Sbjct: 8 VYLFDFDYTLADSSRGIVTCFRSVLERHGYTG-ITDDMIKRTIGKTLEESFSILTGITDA 66
Query: 130 ERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHL 189
+++ F+ +K D + P + +K+ G +++ + ++
Sbjct: 67 DQLESFRQEYSKEADIYMNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNH 126
Query: 190 GFDQYYANRFIEKDDRLTGQVMEPIIDGTAKS--QILLEAIQKLQINPEDTIAVGDGNND 247
D ++ ++ K + LL AI +L+ PE+ + +GD D
Sbjct: 127 MPDDWFD------------IIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVLYIGDSTVD 174
Query: 248 LDMLRVAGYGVAF------HAKPALAKQAKIRIDH-SDLEALL 283
AG A+ A I L ++
Sbjct: 175 AGTAAAAGVSFTGVTSGMTTAQEFQAYPYDRIISTLGQLISVP 217
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein, phophatase-like
domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12}
SCOP: c.108.1.10
Length = 275
Score = 43.5 bits (101), Expect = 5e-05
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 225 LEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF----HAKPALAKQAKIRIDHSDLE 280
+ Q+L T+ +GDG ND +L V Y V L + R+ + E
Sbjct: 198 IATYQQLSGKRPTTLGLGDGPNDAPLLEVMDYAVIVKGLNREGVHLHDEDPARVWRTQRE 257
Query: 281 A 281
Sbjct: 258 G 258
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics,
PSI-2; 1.80A {Legionella pneumophila}
Length = 191
Score = 43.4 bits (102), Expect = 6e-05
Identities = 32/188 (17%), Positives = 61/188 (32%), Gaps = 20/188 (10%)
Query: 117 AMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTG 176
++N EI + L E+ K + L + + + G EL + V
Sbjct: 2 SLNTEIEMNE-LLEKAKKIKCLICDVDGVLSDGLLHIDNHGNELK---------SFHVQD 51
Query: 177 GFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPE 236
G + A A + + K + L +N +
Sbjct: 52 GMGLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQVDKRSAYQHLKKTLGLNDD 111
Query: 237 DTIAVGDGNNDLDMLRVAGYGVA-FHAKPALAKQAKIRIDHSD--------LEALLYIQG 287
+ +GD DL +++ G GVA +A P + + A R + + + +L Q
Sbjct: 112 EFAYIGDDLPDLPLIQQVGLGVAVSNAVPQVLEFADWRTERTGGRGAVRELCDLILNAQN 171
Query: 288 YKKDEIVK 295
K + +
Sbjct: 172 -KAELAIT 178
>1o08_A Beta-phosphoglucomutase; haloacid dehalogenase superfamily,
phosphotransferase, pentavalent phosphate intermediate,
isomerase; HET: G16; 1.20A {Lactococcus lactis} SCOP:
c.108.1.6 PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A*
2whe_A 1lvh_A* 3fm9_A
Length = 221
Score = 42.7 bits (99), Expect = 1e-04
Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 10/215 (4%)
Query: 82 LLIADMDSTMIEQE-----CIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFK 136
++ D+D + + LA+ IGI + ++ K
Sbjct: 4 AVLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKK 63
Query: 137 GTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYA 196
++ + + K Y ++ G LL + +A +
Sbjct: 64 VSAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLL 123
Query: 197 NRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGY 256
R + I + A + + P ++I + D + ++ +G
Sbjct: 124 ERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGA 183
Query: 257 GVAFHAKPALAKQAKIRID---HSDLEAL--LYIQ 286
+P + + H LE L +++Q
Sbjct: 184 LPIGVGRPEDLGDDIVIVPDTSHYTLEFLKEVWLQ 218
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 42.5 bits (99), Expect = 1e-04
Identities = 28/139 (20%), Positives = 46/139 (33%), Gaps = 10/139 (7%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFI----EKDDRLTGQV 210
E + G + ++TG + + LG KD L
Sbjct: 491 HDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKDANLASIP 550
Query: 211 MEPIIDGT-----AKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPA 265
+E +I+ + E ++KLQ GDG ND L+ A G+A
Sbjct: 551 VEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVADATD 610
Query: 266 LAKQAK-IRIDHSDLEALL 283
A+ A I + L ++
Sbjct: 611 AARGASDIVLTEPGLSVII 629
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter
autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A*
1aq6_A
Length = 253
Score = 40.8 bits (94), Expect = 3e-04
Identities = 21/227 (9%), Positives = 60/227 (26%), Gaps = 27/227 (11%)
Query: 83 LIADMDSTMIEQE-CIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERIS-------- 133
++ D T+ + + D + + R E + +L R +
Sbjct: 5 VVFDAYGTLFDVQSVADATERAYPGRGEYITQVWRQKQLEYSWLRALMGRYADFWSVTRE 64
Query: 134 --------LFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFI 185
L + + + P + +++ G + +
Sbjct: 65 ALAYTLGTLGLEPDESFLADMAQAYNRLTPYPDAAQCLAELAPLKRAILSNGAPDMLQAL 124
Query: 186 AQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGN 245
+ G + ++ + L + P + + V
Sbjct: 125 VANAGLTDSFDAVIS----------VDAKRVFKPHPDSYALVEEVLGVTPAEVLFVSSNG 174
Query: 246 NDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEALLYIQGYKKDE 292
D+ + G+ VA A+ + A+ + + ++ ++E
Sbjct: 175 FDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREE 221
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural
genomics, phosphatase, PSI-2, protein structure
initiative; HET: MSE; 1.76A {Vibrio cholerae}
Length = 195
Score = 40.7 bits (95), Expect = 4e-04
Identities = 28/134 (20%), Positives = 39/134 (29%), Gaps = 30/134 (22%)
Query: 150 KITYNPGGYELV----------HTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRF 199
I G EL + G ++TG S + LG Y +
Sbjct: 40 LIYMGNQGEELKTFHTRDGYGVKALMNAGIEIAIITGRRSQIVENRMKALGISLIYQGQ- 98
Query: 200 IEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
K Q + QKL I PE T +GD D ++ V
Sbjct: 99 ------------------DDKVQAYYDICQKLAIAPEQTGYIGDDLIDWPVMEKVALRVC 140
Query: 260 -FHAKPALAKQAKI 272
P LA++A
Sbjct: 141 VADGHPLLAQRANY 154
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue,
haloacid dehalogenase superfamily, isomerase,
phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis}
PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A*
1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Length = 221
Score = 40.9 bits (95), Expect = 4e-04
Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 17/143 (11%)
Query: 149 KKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTG 208
PG +L+ ++ N L + S F+ + + Y+
Sbjct: 88 SPADVYPGILQLLKDLRSNKIKIALASA--SKNGPFLLERMNLTGYFDAIAD-------- 137
Query: 209 QVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAK 268
+ I + A + + P ++I + D + ++ +G +P
Sbjct: 138 --PAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGALPIGVGRPEDLG 195
Query: 269 QAKIRID---HSDLEAL--LYIQ 286
+ + H LE L +++Q
Sbjct: 196 DDIVIVPDTSHYTLEFLKEVWLQ 218
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid
9-phosphate phosphohydrolase, nucleotidyltransferase;
HET: PEG PG4 EDO PGE; 1.10A {Bacteroides
thetaiotaomicron} PDB: 3e84_A 3e81_A*
Length = 164
Score = 40.4 bits (94), Expect = 5e-04
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 229 QKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSDL-----EAL 282
+L IN E +GD ND +L+ G A + + + I ++ E +
Sbjct: 89 NELGINLEQVAYIGDDLNDAKLLKRVGIAGVPASAPFYIRRLSTIFLEKRGGEGVFREFV 148
Query: 283 LYIQGYKKDEIVK 295
+ G ++ +
Sbjct: 149 EKVLGINLEDFIA 161
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics,
protein structure initiative, NEW research center for
structural genomics; 3.00A {Bacillus subtilis}
Length = 233
Score = 40.5 bits (94), Expect = 5e-04
Identities = 33/218 (15%), Positives = 61/218 (27%), Gaps = 7/218 (3%)
Query: 86 DMDSTMIE-----QECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTST 140
D+D + + +A+ I I + +S+ +
Sbjct: 8 DLDGVITDTAEYHFLAWKHIAEQIDIPFDRDMNERLKGISREESLESILIFGGAETKYTN 67
Query: 141 KIIDSLLEKKITYNPGGYELVHTMK-QNGASTLLVTGGFSIFARFIAQHLGFDQYYANRF 199
L+ +K + G LL +A R
Sbjct: 68 AEKQELMHRKNRDYQMLISKLTPEDLLPGIGRLLCQLKNENIKIGLASSSRNAPKILRRL 127
Query: 200 IEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA 259
DD + G I L A L ++P D A+ D + ++ AG
Sbjct: 128 AIIDDFHAIVDPTTLAKGKPDPDIFLTAAAMLDVSPADCAAIEDAEAGISAIKSAGMFAV 187
Query: 260 FHAKPALAKQAKIRIDH-SDLEALLYIQGYKKDEIVKS 296
+ A + + SDL L + +++ I +S
Sbjct: 188 GVGQGQPMLGADLVVRQTSDLTLELLHEEWEQYRIRES 225
>1wpg_A Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; membrane
protein, P-type ATPase, HAD fold, hydrolase; HET: ADP
TG1; 2.30A {Oryctolagus cuniculus} SCOP: b.82.7.1
c.108.1.7 d.220.1.1 f.33.1.1 PDB: 1kju_A 1iwo_A 1t5s_A*
1t5t_A* 1vfp_A* 1su4_A* 1xp5_A* 2agv_A* 2by4_A* 2c88_A*
2c8k_A* 2c8l_A* 2c9m_A 2o9j_A* 2oa0_A* 3b9b_A 3b9r_A*
3fgo_A* 3fpb_A* 3fps_A* ...
Length = 994
Score = 40.3 bits (93), Expect = 5e-04
Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 11/140 (7%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFI------EKDDRLTG 208
+ + G +++TG A I + +G E DD
Sbjct: 605 KEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLA 664
Query: 209 QVMEPIIDGTAKSQIL----LEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKP 264
+ E +++ + ++ LQ E T GDG ND L+ A G+A +
Sbjct: 665 EQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGT 724
Query: 265 ALAKQ-AKIRIDHSDLEALL 283
A+AK +++ + + ++
Sbjct: 725 AVAKTASEMVLADDNFSTIV 744
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 1iwc_A
1iwf_A
Length = 1034
Score = 38.2 bits (88), Expect = 0.002
Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 34/163 (20%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEP- 213
+ V + G ++VTG I A+ IA +G + + RL V +
Sbjct: 607 ATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVN 666
Query: 214 -------IIDGTAKSQIL------------------------LEAIQKLQINPEDTIAVG 242
+I+G + L ++ Q G
Sbjct: 667 RKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTG 726
Query: 243 DGNNDLDMLRVAGYGVAFHAKPA-LAKQ-AKIRIDHSDLEALL 283
DG ND L+ A GVA + AK A + + + +++
Sbjct: 727 DGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIV 769
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A
Length = 1028
Score = 38.3 bits (88), Expect = 0.002
Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 34/163 (20%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEP- 213
+ V + G ++VTG I A+ IA+ +G + RL + +
Sbjct: 602 AAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVN 661
Query: 214 -------IIDGTAKSQIL------------------------LEAIQKLQINPEDTIAVG 242
++ G+ + L ++ Q G
Sbjct: 662 PRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTG 721
Query: 243 DGNNDLDMLRVAGYGVAFHAK--PALAKQAKIRIDHSDLEALL 283
DG ND L+ A GVA + A + + + +++
Sbjct: 722 DGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIV 764
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphatase; structural
genomics, KDO 8-P phosphatase, structure 2 function
project, S2F; HET: MES; 1.67A {Haemophilus influenzae rd
KW20} SCOP: c.108.1.5 PDB: 1j8d_A*
Length = 180
Score = 38.1 bits (88), Expect = 0.003
Identities = 14/124 (11%), Positives = 33/124 (26%), Gaps = 10/124 (8%)
Query: 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQ 209
++ Y+ G + ++G ++ A + +
Sbjct: 23 QLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPILRRRIADLGI-------- 74
Query: 210 VMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-HAKPALAK 268
+ K + +++ + E T +GD + DL G A A +
Sbjct: 75 -KLFFLGKLEKETACFDLMKQAGVTAEQTAYIGDDSVDLPAFAACGTSFAVADAPIYVKN 133
Query: 269 QAKI 272
Sbjct: 134 AVDH 137
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural
genomics, PSI, protein structure initiative; 1.92A
{Thermoplasma acidophilum} SCOP: c.108.1.15
Length = 239
Score = 37.3 bits (85), Expect = 0.004
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 214 IIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIR 273
II+ AI+ ++ I GD D + AK
Sbjct: 151 IIELRVPGVNKGSAIRSVR-GERPAIIAGDDATDEAAFEANDDALTIKVGEGETH-AKFH 208
Query: 274 I-DHSDLEALL 283
+ D+ ++ +L
Sbjct: 209 VADYIEMRKIL 219
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI,
divalent metal, HAD superfamily, KDO 8-P, hydrolase;
1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A
3hyc_A 3i6b_A*
Length = 188
Score = 36.7 bits (84), Expect = 0.007
Identities = 29/183 (15%), Positives = 49/183 (26%), Gaps = 18/183 (9%)
Query: 123 PFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFA 182
P + + + + L + I G EL ++G A
Sbjct: 14 PVSADVMAKAENIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVA 73
Query: 183 RFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVG 242
+ + + ++KL I PE+ VG
Sbjct: 74 IITGRKAKLVEDRCATLGITHLYQGQSNKLIAFS---------DLLEKLAIAPENVAYVG 124
Query: 243 DGNNDLDMLRVAGYGVAF-HAKPALAKQAKIRIDHSD--------LEALLYIQGYKKDEI 293
D D ++ G VA A P L +A + + LL QG +
Sbjct: 125 DDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIAGGRGAVREVCDLLLLAQGKLDEAK 184
Query: 294 VKS 296
+S
Sbjct: 185 GQS 187
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural
genomics, protein structure initiative; 2.40A {Aquifex
aeolicus VF5}
Length = 162
Score = 36.6 bits (84), Expect = 0.007
Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 18/170 (10%)
Query: 127 SLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIA 186
+LR+R+ K I L + K+ Y G + +G L+ A
Sbjct: 1 ALRDRVKKLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISG 60
Query: 187 QHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNN 246
+ ++ I + + +K + E+ +GD
Sbjct: 61 RDSAPLITRLKELGVEEIYTGSYKKLEIYE---------KIKEKYSLKDEEIGFIGDDVV 111
Query: 247 DLDMLRVAGYGVA-FHAKPALAKQAKIRIDHSD--------LEALLYIQG 287
D+++++ G+ VA +A + K A + E + +++
Sbjct: 112 DIEVMKKVGFPVAVRNAVEEVRKVAVYITQRNGGEGALREVAELIHFLKN 161
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 35.9 bits (82), Expect = 0.012
Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 27/215 (12%)
Query: 86 DMDSTMIE-----QECIDELADLIGIKEK-----VSLITARAMNGEIPFQDSLRERISLF 135
D+D T+ + + + + I+ + + + + + E ++
Sbjct: 10 DLDGTLTDSAEGITKSVKYSLNKFDIQVEDLSSLNKFVGPPLKTSFMEYYNFDEETATVA 69
Query: 136 KGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYY 195
+ + G L+ ++K G ++ T ++F++ I +H Y+
Sbjct: 70 IDYYRDYFKAKGMFENKVYDGIEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLAFYF 129
Query: 196 ANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAG 255
D + K ++ A++ L I +D I +GD D+
Sbjct: 130 DAIVGSSLDG----------KLSTKEDVIRYAMESLNIKSDDAIMIGDREYDVIGALKNN 179
Query: 256 YGVA-----FHAKPALAK-QAKIRIDH-SDLEALL 283
F + L A ++ +L +
Sbjct: 180 LPSIGVTYGFGSYEELKNAGANYIVNSVDELHKKI 214
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 35.9 bits (82), Expect = 0.012
Identities = 26/129 (20%), Positives = 39/129 (30%), Gaps = 23/129 (17%)
Query: 155 PGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPI 214
V +K+ G ++TG A I++ L D A +
Sbjct: 166 ESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSE--------- 216
Query: 215 IDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQ-AKIR 273
K E VGDG ND L A G+A + +A + I
Sbjct: 217 -------------EVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIV 263
Query: 274 IDHSDLEAL 282
+ DL +
Sbjct: 264 LIRDDLRDV 272
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.0 bits (79), Expect = 0.022
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 20/47 (42%)
Query: 226 EAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKI 272
+A++KLQ + L++ Y A + PALA +A +
Sbjct: 20 QALKKLQAS----------------LKL--Y--ADDSAPALAIKATM 46
Score = 26.1 bits (56), Expect = 9.1
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 8/27 (29%)
Query: 22 KQIMQIVNSSI-FYWLADSIACDIILP 47
KQ ++ + +S+ Y AD A P
Sbjct: 19 KQALKKLQASLKLY--ADDSA-----P 38
>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex,
protein glycosylation; HET: MSE M1P; 1.75A {Homo
sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*
Length = 262
Score = 33.1 bits (74), Expect = 0.082
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 231 LQINPEDTIAVGD----GNNDLDMLRVAG-YGVAF-HAKPALAKQAKIRIDHSDLEA 281
Q + + G+ G ND ++ G + + + + +I + EA
Sbjct: 206 DQDSFDTIHFFGNETSPGGNDFEIFADPRTVGHSVVSPQDTVQRCREIFFPETAHEA 262
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural
genomics, PSI, protein structure initiative; HET: G1P;
2.00A {Escherichia coli K12} SCOP: c.108.1.2
Length = 206
Score = 32.0 bits (71), Expect = 0.16
Identities = 23/188 (12%), Positives = 58/188 (30%), Gaps = 21/188 (11%)
Query: 80 KNLLIADMDSTMIE---QECIDELADLIGI-------KEKVSLITARAMNGEIPFQDSLR 129
K L I D+ + +++ + +DL I + + GEI +
Sbjct: 7 KMLYIFDLGNVIVDIDFNRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEISDEAFAE 66
Query: 130 E--RISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQ 187
+ + + P ++H +++ G ++++ + F +
Sbjct: 67 ALCHEMALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPE 126
Query: 188 HLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNND 247
+ A+ D + +I +Q +P DT+ D ++
Sbjct: 127 EYPEIRDAADHIYLSQDLGMRKPEA---------RIYQHVLQAEGFSPSDTVFFDDNADN 177
Query: 248 LDMLRVAG 255
++ G
Sbjct: 178 IEGANQLG 185
>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310,
phosphatase, PFAM PF03332, HAD superfamily, jaecken
disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB:
2q4r_A
Length = 246
Score = 31.6 bits (70), Expect = 0.24
Identities = 24/221 (10%), Positives = 49/221 (22%), Gaps = 46/221 (20%)
Query: 80 KNLLIADMDSTM------IEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERIS 133
L + D+D T+ I +E D L L K K+ ++ +
Sbjct: 6 PALCLFDVDGTLTAPRQKITKEMDDFLQKLRQ-KIKIGVVGGSDFEKVQEQLGNDVVEKY 64
Query: 134 LFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ 193
+ ++ K + L + Q+ + L + + F
Sbjct: 65 DYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRN 124
Query: 194 YYANRFIEKDDRLTGQVMEPII----------------------------------DGTA 219
N + +E D
Sbjct: 125 GMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQISFDVFP 184
Query: 220 KSQILLEAIQKL-QINPEDTIAVGD----GNNDLDMLRVAG 255
++ + + GD G ND ++
Sbjct: 185 DGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPR 225
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like,
rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A
{Mus musculus}
Length = 168
Score = 31.2 bits (70), Expect = 0.29
Identities = 6/46 (13%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 228 IQKLQINPEDTIAVGDGNNDLDMLRVAGYGVA-FHAKPALAKQAKI 272
+++ + ++ +G+ +D + L+ G A K
Sbjct: 92 RKEMGLCWKEVAYLGNEVSDEECLKRVGLSAVPADACSGAQKAVGY 137
>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein),
structural genomics, PSI, protein structure initiative;
2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22
Length = 253
Score = 31.0 bits (69), Expect = 0.31
Identities = 10/112 (8%), Positives = 33/112 (29%)
Query: 153 YNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVME 212
Y + + + G + + ++ A+ ++ + + G
Sbjct: 122 IKAPVYADAIDFIKRKKRVFIYSSGSVKAQKLLFGYVQDPNAPAHDSLDLNSYIDGYFDI 181
Query: 213 PIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKP 264
++Q ++ + + + + D +LD G ++P
Sbjct: 182 NTSGKKTETQSYANILRDIGAKASEVLFLSDNPLELDAAAGVGIATGLASRP 233
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; HET: MSE; 1.76A {Escherichia coli O157}
SCOP: c.108.1.6
Length = 226
Score = 30.5 bits (67), Expect = 0.49
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 226 EAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAF-----HAKPALAKQAKIRIDH-SDL 279
+ KL ++P +A+ D N + + A A +++ ++L
Sbjct: 158 DCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTEL 217
Query: 280 EA 281
A
Sbjct: 218 TA 219
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.6 bits (68), Expect = 0.50
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 27/123 (21%)
Query: 157 GYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIID 216
G E++ + Q GA ++ T +RF Q YY + + + + + ++ P
Sbjct: 490 GAEVLQGLLQGGAKVVVTT------SRFSKQ---VTDYYQSIYAKYGAKGSTLIVVPFNQ 540
Query: 217 GTAKS-QILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRID 275
G+ + + L+E I DT G DLD + + F A P + I ++
Sbjct: 541 GSKQDVEALIEFIY-------DTEKNGGLGWDLDAI------IPFAAIP----EQGIELE 583
Query: 276 HSD 278
H D
Sbjct: 584 HID 586
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase,
coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Length = 264
Score = 30.4 bits (67), Expect = 0.56
Identities = 20/141 (14%), Positives = 51/141 (36%), Gaps = 8/141 (5%)
Query: 3 LIATLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSI 62
+ + +L+ + I++ + W+ D IA ++ +E + S+ +
Sbjct: 53 IGDVRLISCKTTTECKALIDRGYDILHPN---WVLDCIAYKRLILIEPNYCFNVSQKMRA 109
Query: 63 IADKPIDLIIHRHENRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITAR-----A 117
+A+K +D + EN ++ + + + + EL ++ + +
Sbjct: 110 VAEKRVDCLGDSFENDISETKLSSLYKSQLSLPPMGELEIDSEVRRFPLFLFSNRIAYVP 169
Query: 118 MNGEIPFQDSLRERISLFKGT 138
D + +I LF G
Sbjct: 170 RRKISTEDDIIEMKIKLFGGK 190
>2go7_A Hydrolase, haloacid dehalogenase-like family; NP_346487.1,
structural genomics, PSI, protein structure initiative;
2.10A {Streptococcus pneumoniae TIGR4} SCOP: c.108.1.6
Length = 207
Score = 30.2 bits (66), Expect = 0.58
Identities = 21/210 (10%), Positives = 52/210 (24%), Gaps = 13/210 (6%)
Query: 79 RKNLLIADMDSTMIEQE-----CIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERIS 133
+K I D+D T+++ I+E I + +
Sbjct: 3 QKTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLV------ 56
Query: 134 LFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ 193
+ +L + + + L I
Sbjct: 57 -RVAEDRNLDVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQFIYTHKGNNAF 115
Query: 194 YYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRV 253
+ + + + K Q+N ++T +GD D++ +
Sbjct: 116 TILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQN 175
Query: 254 AGYGVAFHAKPALAKQAKIRIDHSDLEALL 283
+G + +I+ +D+ +
Sbjct: 176 SGIQSINFLESTYEGNHRIQ-ALADISRIF 204
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP:
c.108.1.22 PDB: 1zs9_A
Length = 261
Score = 29.8 bits (65), Expect = 0.68
Identities = 12/115 (10%), Positives = 30/115 (26%), Gaps = 9/115 (7%)
Query: 150 KITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQ 209
K + V ++ G + + G + + H
Sbjct: 128 KAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVD---------G 178
Query: 210 VMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKP 264
+ I +S+ + + + + + + D + A VA +P
Sbjct: 179 HFDTKIGHKVESESYRKIADSIGCSTNNILFLTDVTREASAAEEADVHVAVVVRP 233
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I
protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB:
3m6k_A* 3m7d_A 3m7g_A
Length = 380
Score = 29.3 bits (65), Expect = 1.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 95 ECIDELADLIGIKEKVSLITARAMNGEI 122
EC +L D GI+E V+L ARA +G I
Sbjct: 296 ECALKLQDRYGIREDVALCLARAFDGSI 323
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-
hairpin-helix, HHH motif, three helix bundle; 2.30A
{Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4
a.60.2.4 a.267.1.1 PDB: 2csd_A
Length = 519
Score = 29.3 bits (65), Expect = 1.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 95 ECIDELADLIGIKEKVSLITARAMNGEI 122
EC +L D GI+E V+L ARA +G I
Sbjct: 296 ECALKLQDRYGIREDVALCLARAFDGSI 323
>3e58_A Putative beta-phosphoglucomutase; structural genomics, PSI-2,
protein structure initiative; 1.86A {Streptococcus
thermophilus lmg 18311}
Length = 214
Score = 28.7 bits (62), Expect = 1.6
Identities = 26/207 (12%), Positives = 55/207 (26%), Gaps = 6/207 (2%)
Query: 83 LIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKI 142
+I DMD + + E + +K I + I L
Sbjct: 8 IIFDMDGVLFDTEKYYYDRRASFLGQKGISIDHLPPSFFIGGNTKQVWENILRDEYDKWD 67
Query: 143 IDSLLEKKITYNPGGYELVHTMKQNGASTLLVTG--GFSIFARFIAQHLGFDQYYANRFI 200
+ +L E+ TY + +L +
Sbjct: 68 VSTLQEEYNTYKQNNPLPYKELIFPDVLKVLNEVKSQGLEIGLASSSVKADIFRALEENR 127
Query: 201 EKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAG---YG 257
+ E + +I L A+++L + + + D + A +
Sbjct: 128 LQGFFDIVLSGEEFKESKPNPEIYLTALKQLNVQASRALIIEDSEKGIAAGVAADVEVWA 187
Query: 258 VAFHAKPALAKQAKIRIDH-SDLEALL 283
+ + AK +D +D+ L+
Sbjct: 188 IRDNEFGMDQSAAKGLLDSLTDVLDLI 214
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein,
isopeptide bond, protein binding; 2.05A {Mus musculus}
Length = 391
Score = 28.5 bits (63), Expect = 2.0
Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 8/128 (6%)
Query: 11 RSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKILSIIA------ 64
R+ L ++ + L S I+ +GMI + ++ L ++
Sbjct: 244 RALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFSLMDKV 303
Query: 65 DKPIDLIIHRHENRRKNLLIADMDSTM--IEQECIDELADLIGIKEKVSLITARAMNGEI 122
I+ ++ E + +ADM + I + L + + S + A +
Sbjct: 304 PNGIEPMLKDLEEHIISAGLADMVAAAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDP 363
Query: 123 PFQDSLRE 130
F + +
Sbjct: 364 RFLTARDK 371
>1zup_A Hypothetical protein TM1739; structural genomics, PSI, protein
structure initiative, joint center for structural
genomics, JCSG; 2.20A {Thermotoga maritima} SCOP:
c.55.3.11
Length = 315
Score = 28.3 bits (63), Expect = 2.1
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 192 DQYYAN--RFIEKDDRLTGQVMEPII--DGTAKSQILLE 226
DQ + RF+E+D++ G++++ II DG +S + +
Sbjct: 33 DQTFVEESRFLEEDEQREGEILDQIIFVDGKRRSFVRIT 71
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold,
hydrolase; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Length = 240
Score = 28.2 bits (61), Expect = 2.3
Identities = 28/216 (12%), Positives = 62/216 (28%), Gaps = 15/216 (6%)
Query: 83 LIADMDSTMIEQE-CIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTK 141
+ D T+++ + AD +G + + R E + +L + + F + +
Sbjct: 17 CVFDAYGTLLDVHSAVMRNADEVGASAEALSMLWRQRQLEYSWTRTLMHQYADFWQLTDE 76
Query: 142 IIDSLL--------EKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQ 193
+ L + Y+ + + + I A + Q
Sbjct: 77 ALTFALRTYHLEDRKGLKDRLMSAYKELSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQ 136
Query: 194 YYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRV 253
+ + + +I A +L +NP + V DL
Sbjct: 137 AALKASKLDRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCFVSSNAWDLGGAGK 196
Query: 254 AGYGVAF-----HAKPALAKQAKIRIDH-SDLEALL 283
G+ + K +++ S+L LL
Sbjct: 197 FGFNTVRINRQGNPPEYEFAPLKHQVNSLSELWPLL 232
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 28.1 bits (62), Expect = 2.4
Identities = 30/210 (14%), Positives = 51/210 (24%), Gaps = 15/210 (7%)
Query: 47 PLEGMIDHHRSKILSIIADKPIDLIIHRHENRRKNLLIADMDSTMIEQECIDELADLIGI 106
E + K+ + D P ++ R+ R + D+ +M +
Sbjct: 95 AWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKS------------ 142
Query: 107 KEKVSLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQ 166
+ + P +L K D NP EL
Sbjct: 143 MREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYAL 202
Query: 167 NGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLE 226
G ++V+G S ++ L Q D + E
Sbjct: 203 MGYQIVVVSGRESGTKEDPTKYY--RMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEE 260
Query: 227 AIQKLQINPEDTIAV-GDGNNDLDMLRVAG 255
K D D ++M R G
Sbjct: 261 IFWKHIAPHFDVKLAIDDRTQVVEMWRRIG 290
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of
haloacid dehalogenase- like superfamily; HET: MSE PG4;
1.66A {Deinococcus radiodurans R1}
Length = 200
Score = 28.2 bits (61), Expect = 2.6
Identities = 22/183 (12%), Positives = 52/183 (28%), Gaps = 21/183 (11%)
Query: 83 LIADMDSTMI----EQECIDELADLIGIKEKVSLITARAMNGEI------PFQDSLRERI 132
L D+ ++ ++E ++A G+ R E+ + +
Sbjct: 7 LFWDIGGVLLTNGWDREQRADVAQRFGLDTDDFTERHRLAAPELELGRMTLAEYLEQVVF 66
Query: 133 SLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFD 192
+ + + +++E++ P L + Q L G + I +
Sbjct: 67 YQPRDFTPEDFRAVMEEQSQPRPEVLALARDLGQRYRMYSLNNEGRDLNEYRIRTFGLGE 126
Query: 193 QYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLR 252
A + + + Q+ PE+ + V D ++ R
Sbjct: 127 FLLAFFT-----------SSALGVMKPNPAMYRLGLTLAQVRPEEAVMVDDRLQNVQAAR 175
Query: 253 VAG 255
G
Sbjct: 176 AVG 178
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure,
structural genomics, structural proteomics in europe,
spine, hydrolase; 2.60A {Escherichia coli} PDB: 2obc_A*
2o7p_A*
Length = 402
Score = 27.6 bits (60), Expect = 3.5
Identities = 19/158 (12%), Positives = 52/158 (32%), Gaps = 8/158 (5%)
Query: 51 MIDHHRSKILSIIADKPIDLIIHRHENRRKNLLIADMDSTMIEQECIDELADLIGIKEKV 110
+ R++ +I+ L R + L + +Q + +I + +V
Sbjct: 206 DVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRV 265
Query: 111 SLITARAMNGEIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGAS 170
+ + + +E + T ++ + + L+ + + +
Sbjct: 266 TPVHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLV----VLMMQLGKQQIN 321
Query: 171 TLLVTGGFSIFARFIAQHLGFDQ---YYANRFIEKDDR 205
++ V G ++ + L D+ Y A + + D R
Sbjct: 322 SIWVEAGPTLAGALLQAGL-VDELIVYIAPKLLGSDAR 358
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), structural genomics;
HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 27.4 bits (59), Expect = 4.0
Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 7/72 (9%)
Query: 48 LEGMIDHHRSKILSIIADKPIDL---IIHRHENRRKNLLIADMD--STMIEQECIDELAD 102
+ + I + + + I+ NL + + ++E++ + L
Sbjct: 23 RSLDLKYEDGNIFGSMCSNVLPITRKIVDIFLE--TNLGDPGLFKGTKLLEEKAVALLGS 80
Query: 103 LIGIKEKVSLIT 114
L+ K+ I
Sbjct: 81 LLNNKDAYGHIV 92
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function,
PSI-2, protein structure initiative; HET: CDP; 1.85A
{Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2
PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Length = 146
Score = 27.3 bits (61), Expect = 4.8
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 38 DSIACDIILPLEGMIDHHRSKILSIIADKPIDLIIHRHENRRKNLLIADMDSTMIE 93
I I++P +H S+I+ IIA + R+ + D D I
Sbjct: 89 KKIDGAIVVP---KKTYHSSEIIEIIAPMKL----------REQFNLKDGDVIKIL 131
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.2 bits (59), Expect = 5.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 76 ENRRKNLLIADMDSTMIEQE 95
E +RK L D S ++EQE
Sbjct: 92 EEQRKRLQELDAASKVMEQE 111
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase
maturation, [4Fe-4S] cluster, thiol redox; HET: CSW;
2.07A {Thermococcus kodakarensis KOD1}
Length = 372
Score = 27.0 bits (60), Expect = 5.2
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 224 LLEAIQKLQINPEDTIAVGDGNNDLDMLRVAG-YGVAFHAKPALAKQAKIRIDHSDLEAL 282
+ ++K + E+ I G DM ++ G K ++ +RI + +
Sbjct: 79 MQLIMRKAREEGEEIILTTFG----DMYKIPTPMGSFADLK---SEGFDVRIVYGIFDTY 131
Query: 283 LYIQGYKKDEIV 294
+ +V
Sbjct: 132 RIAKENPDKTVV 143
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
PSI, protein structure initiative; 1.40A {Streptococcus
pneumoniae TIGR4} SCOP: c.108.1.3
Length = 190
Score = 27.0 bits (58), Expect = 5.8
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 220 KSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAG 255
+ +L +K + +GD D++ + AG
Sbjct: 139 NPESMLYLREKY--QISSGLVIGDRPIDIEAGQAAG 172
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP:
c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Length = 232
Score = 26.3 bits (56), Expect = 8.0
Identities = 20/216 (9%), Positives = 53/216 (24%), Gaps = 15/216 (6%)
Query: 83 LIADMDSTMIEQE-CIDELADLIGIKEKVSLITARAMNGEIPFQDSLRERISLFKGTSTK 141
+ D+ T+ + + + + + R E + SL R F+ +
Sbjct: 7 IAFDLYGTLFDVHSVVGRCDEAFPGRGREISALWRQKQLEYTWLRSLMNRYVNFQQATED 66
Query: 142 IIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHLGFDQYYANRFIE 201
+ + + L + + I+
Sbjct: 67 ALRFTCRHLGLDLDARTRSTLCDAYLRLAPFSEVPDSLRELKRRGLKLAILSNGSPQSID 126
Query: 202 KDDRLTGQV--------MEPIIDGTAKSQILLEAIQKLQINPEDTIAVGDGNNDLDMLRV 253
G ++P+ +++ A Q L ++ + V D R
Sbjct: 127 AVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAILFVASNAWDATGARY 186
Query: 254 AGYGVAF-----HAKPALAKQAKIRIDH-SDLEALL 283
G+ + + + + + + L
Sbjct: 187 FGFPTCWINRTGNVFEEMGQTPDWEVTSLRAVVELF 222
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A
{Methylobacterium extorquens AM1} SCOP: c.37.1.10 PDB:
2qm7_A*
Length = 337
Score = 26.4 bits (57), Expect = 8.5
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 76 ENRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNGEI-PFQ--DSLRERI 132
+R+ + M + ++ + L +++ + GE P D++ I
Sbjct: 269 AGKRREQDVKWMWA-LVHERLHQRLVGSAEVRQATAEAERAVAGGEHSPAAGADAIATLI 327
Query: 133 SLFK 136
L +
Sbjct: 328 GLLE 331
>2bde_A Cytosolic IMP-GMP specific 5'-nucleotidase; alpha beta protein,
structural genomics, PSI, protein structure initiative;
2.90A {Legionella pneumophila} SCOP: c.108.1.23
Length = 470
Score = 26.4 bits (58), Expect = 8.6
Identities = 9/55 (16%), Positives = 20/55 (36%)
Query: 135 FKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSIFARFIAQHL 189
GT II L+K + E + + G ++T +++ + +
Sbjct: 169 SDGTLKNIIIKNLKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYA 223
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 26.1 bits (57), Expect = 9.9
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 80 KNLLIADMD--STMIEQECIDELADLIG 105
N L D+ + E E + A ++G
Sbjct: 126 SNPLHPDLWPSTAKFEAEVVAMTAHMLG 153
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.139 0.390
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,550,616
Number of extensions: 120844
Number of successful extensions: 503
Number of sequences better than 10.0: 1
Number of HSP's gapped: 477
Number of HSP's successfully gapped: 106
Length of query: 297
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 205
Effective length of database: 3,462,782
Effective search space: 709870310
Effective search space used: 709870310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)