BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB
[Candidatus Liberibacter asiaticus str. psy62]
         (297 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780960|ref|YP_003065373.1| phosphoserine phosphatase SerB [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 297

 Score =  606 bits (1562), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/297 (100%), Positives = 297/297 (100%)

Query: 1   MALIATLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKIL 60
           MALIATLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKIL
Sbjct: 1   MALIATLITHRSHPILNISLVKQIMQIVNSSIFYWLADSIACDIILPLEGMIDHHRSKIL 60

Query: 61  SIIADKPIDLIIHRHENRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNG 120
           SIIADKPIDLIIHRHENRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNG
Sbjct: 61  SIIADKPIDLIIHRHENRRKNLLIADMDSTMIEQECIDELADLIGIKEKVSLITARAMNG 120

Query: 121 EIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSI 180
           EIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSI
Sbjct: 121 EIPFQDSLRERISLFKGTSTKIIDSLLEKKITYNPGGYELVHTMKQNGASTLLVTGGFSI 180

Query: 181 FARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIA 240
           FARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIA
Sbjct: 181 FARFIAQHLGFDQYYANRFIEKDDRLTGQVMEPIIDGTAKSQILLEAIQKLQINPEDTIA 240

Query: 241 VGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEALLYIQGYKKDEIVKSP 297
           VGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEALLYIQGYKKDEIVKSP
Sbjct: 241 VGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEALLYIQGYKKDEIVKSP 297


>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 354

 Score = 25.4 bits (54), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 109 KVSLITARAMNGEIPFQDSLR 129
           ++S+I AR++NG I F D ++
Sbjct: 185 EISIIAARSLNGSICFYDPIQ 205


>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 652

 Score = 25.4 bits (54), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 222 QILLEAIQKLQINPEDTIAVGDGNNDLDMLRVAGYGVAFHAKPALAKQAKIRIDHSDLEA 281
           Q+L++ I +     +D I +       D +  AGY     AK A A + ++R+D    + 
Sbjct: 265 QVLIDKIPEFA---DDLIPIQHNTTIFDAMVHAGYSNGDSAKIAKALKNEVRVDQLTKDE 321

Query: 282 LLYIQGYKKDE 292
           +L I   +KD+
Sbjct: 322 ILRIGVVQKDD 332


>gi|254781044|ref|YP_003065457.1| succinate dehydrogenase iron-sulfur subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 259

 Score = 24.6 bits (52), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 43  DIILPLEGMIDHHRS--KILSIIADKPIDLIIHRHENRRK 80
           D+++ +      HRS    L  ++ KP   ++  HE+R+K
Sbjct: 124 DLVVDMSHFYSQHRSIEPWLKTVSPKPAKELLQSHEDRQK 163


>gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 562

 Score = 24.3 bits (51), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 36  LADSIACDI-ILPLEGMIDHHRSKILSIIADKPIDLIIHRHENR-RKNLLIA 85
            A ++ C   +LP+  +++H  S +   + ++P  ++    ++R R N+L+A
Sbjct: 342 CAKALGCKYDVLPIHDLVNHFFSLMSQFLQEEPSGIVAENIQSRIRGNILMA 393


>gi|254780384|ref|YP_003064797.1| serralysin [Candidatus Liberibacter asiaticus str. psy62]
          Length = 665

 Score = 23.9 bits (50), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 185 IAQHLGFDQYYANRFIE-KDDRLT 207
           IA HL  DQY++N FI  K D LT
Sbjct: 13  IADHLLRDQYWSNYFIRYKPDVLT 36


>gi|254781075|ref|YP_003065488.1| hypothetical protein CLIBASIA_04885 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 266

 Score = 23.1 bits (48), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)

Query: 66  KPIDLI---IHRHENRRKNLLIADMD 88
           K IDLI   I RH  R KN L+A+ D
Sbjct: 181 KQIDLIHQNIDRHLARMKNQLVAESD 206


>gi|254781074|ref|YP_003065487.1| uracil-DNA glycosylase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 227

 Score = 22.7 bits (47), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 49  EGMIDHHRSKILSIIADKPIDLIIHRHEN 77
           EG    HR +      D  IDLI + H+N
Sbjct: 132 EGRAASHRGRGWEQFTDSVIDLISNNHQN 160


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.139    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,648
Number of Sequences: 1233
Number of extensions: 7708
Number of successful extensions: 29
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 10
length of query: 297
length of database: 328,796
effective HSP length: 73
effective length of query: 224
effective length of database: 238,787
effective search space: 53488288
effective search space used: 53488288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)