Query gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 200
No_of_seqs 223 out of 754
Neff 4.8
Searched_HMMs 39220
Date Mon May 30 01:55:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780961.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam05951 Peptidase_M15_2 Bact 100.0 0 0 393.2 18.5 148 52-199 2-153 (153)
2 COG3108 Uncharacterized protei 100.0 0 0 346.1 10.8 149 52-200 33-183 (185)
3 pfam08291 Peptidase_M15_3 Pept 99.9 1.4E-24 3.7E-29 168.9 10.0 88 98-192 21-110 (110)
4 pfam02557 VanY D-alanyl-D-alan 97.0 0.0031 7.9E-08 39.9 6.9 66 101-166 2-80 (131)
5 pfam01085 HH_signal Hedgehog a 95.6 0.071 1.8E-06 31.6 7.2 81 99-191 56-145 (146)
6 TIGR01703 hybrid_clust hydroxy 90.3 0.54 1.4E-05 26.3 4.5 65 97-185 209-278 (567)
7 pfam06904 Extensin-like_C Exte 84.6 0.87 2.2E-05 25.1 2.8 45 111-161 65-110 (178)
8 PRK05290 hydroxylamine reducta 81.2 4.6 0.00012 20.7 6.0 64 98-185 196-260 (540)
9 COG1876 VanY D-alanyl-D-alanin 81.1 4.1 0.0001 21.0 5.1 54 106-161 106-171 (241)
10 COG3921 Uncharacterized protei 80.2 0.92 2.3E-05 24.9 1.5 76 116-197 192-293 (300)
11 TIGR01162 purE phosphoribosyla 76.7 3.5 8.8E-05 21.4 3.6 55 104-158 10-73 (159)
12 cd01914 HCP Hybrid cluster pro 71.7 7.6 0.00019 19.4 4.3 63 99-185 82-145 (423)
13 pfam05088 Bac_GDH Bacterial NA 67.7 2.4 6.1E-05 22.4 1.1 10 87-96 98-107 (1526)
14 KOG2551 consensus 63.4 6.6 0.00017 19.7 2.7 51 124-177 140-192 (230)
15 pfam04303 PrpF PrpF protein. P 62.7 8.8 0.00022 19.0 3.2 46 26-83 98-144 (371)
16 cd01522 RHOD_1 Member of the R 56.0 16 0.00041 17.4 3.6 48 102-155 48-97 (117)
17 PRK12310 hydroxylamine reducta 54.8 17 0.00044 17.2 4.1 64 98-185 86-150 (429)
18 pfam01427 Peptidase_M15 D-ala- 45.0 25 0.00063 16.3 4.5 64 100-163 38-123 (198)
19 TIGR00118 acolac_lg acetolacta 40.6 18 0.00046 17.1 1.9 34 157-196 286-325 (593)
20 COG0041 PurE Phosphoribosylcar 36.4 34 0.00086 15.4 3.8 57 104-160 14-78 (162)
21 PTZ00272 heat shock protein 83 35.1 11 0.00029 18.3 0.1 32 160-193 313-346 (701)
22 PRK10178 D-alanyl-D-alanine di 33.5 38 0.00096 15.2 6.5 96 59-164 8-110 (188)
23 COG0326 HtpG Molecular chapero 33.4 16 0.0004 17.5 0.6 11 161-171 276-286 (623)
24 PRK09603 DNA-directed RNA poly 32.8 18 0.00046 17.1 0.9 40 52-95 1235-1274(2890)
25 TIGR02275 DHB_AMP_lig 2,3-dihy 32.7 26 0.00067 16.1 1.7 36 120-161 390-425 (534)
26 pfam11352 DUF3155 Protein of u 32.1 23 0.0006 16.4 1.3 66 24-92 17-83 (90)
27 pfam05042 Caleosin Caleosin re 29.8 31 0.00078 15.7 1.6 33 57-89 68-102 (174)
28 PRK09552 mtnX 2-hydroxy-3-keto 29.6 44 0.0011 14.8 2.6 41 99-142 70-110 (219)
29 PTZ00130 heat shock protein 90 29.3 13 0.00034 17.9 -0.3 26 160-187 381-406 (824)
30 COG0085 RpoB DNA-directed RNA 27.3 48 0.0012 14.5 3.3 33 58-94 924-956 (1060)
31 PRK05218 heat shock protein 90 26.9 20 0.00051 16.8 0.2 11 160-170 267-277 (612)
32 pfam07942 N2227 N2227-like pro 26.4 50 0.0013 14.4 3.8 10 88-97 19-28 (268)
33 TIGR03176 AllC allantoate amid 26.4 50 0.0013 14.4 2.6 32 97-129 319-350 (406)
34 PRK01229 N-glycosylase/DNA lya 25.6 37 0.00093 15.2 1.4 32 83-114 127-158 (208)
35 TIGR03333 salvage_mtnX 2-hydro 24.5 54 0.0014 14.2 2.6 40 99-141 67-106 (214)
36 TIGR00988 hip integration host 22.8 38 0.00097 15.2 1.0 31 62-99 62-92 (94)
37 PRK10046 dpiA two-component re 22.3 60 0.0015 13.9 5.5 58 105-176 63-120 (225)
38 COG3960 Glyoxylate carboligase 21.4 63 0.0016 13.8 2.0 24 77-100 135-158 (592)
39 COG1059 Thermostable 8-oxoguan 21.2 37 0.00095 15.2 0.7 32 83-114 129-160 (210)
40 pfam01573 Bromo_MP Bromovirus 20.6 51 0.0013 14.4 1.3 18 57-74 96-113 (276)
41 PRK10153 DNA-binding transcrip 20.5 61 0.0016 13.9 1.7 22 56-77 255-276 (512)
42 KOG4166 consensus 20.5 36 0.00092 15.3 0.5 10 147-156 344-353 (675)
43 pfam00731 AIRC AIR carboxylase 20.2 67 0.0017 13.7 3.6 56 103-158 11-74 (150)
44 KOG3678 consensus 20.1 23 0.00059 16.5 -0.5 69 104-182 564-642 (832)
45 COG2828 Uncharacterized protei 20.0 64 0.0016 13.8 1.7 43 25-79 99-142 (378)
No 1
>pfam05951 Peptidase_M15_2 Bacterial protein of unknown function (DUF882). This family consists of a series of hypothetical bacterial proteins of unknown function.
Probab=100.00 E-value=0 Score=393.17 Aligned_cols=148 Identities=49% Similarity=0.928 Sum_probs=145.0
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCEECHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 58983289998189884799998039834899999998872654279853678899999999999809988789951368
Q gi|254780961|r 52 DQEEVRTLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYR 131 (200)
Q Consensus 52 ~~~~~R~L~l~n~~TgE~~~~~y~~~g~y~~~~l~~l~~~lRD~R~~~~~~mDp~lld~L~~i~~~~g~~~Pi~I~SGYR 131 (200)
.++++|+|+|+|+||||+++++||.+|+|+|++|.+|||||||||+||+++|||+|||+|+++++.+|.++||+|+||||
T Consensus 2 ~a~~~R~L~l~n~hTgE~~~~~y~~~g~y~~~al~~l~~~lRD~R~n~~~~iDp~L~d~L~~~~~~~g~~~pi~v~SGYR 81 (153)
T pfam05951 2 AAAEPRSLKLYNLHTGEKAEIVYKRNGRYLPEGLKKLDKLLRDWRRNEPHRMDPRLFDLLWQIYRSLGSRDYIQVVSGYR 81 (153)
T ss_pred CCCCCEEEEEECCCCCCEEEEEEECCCEECHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 98895489977488898688999569858899999984997077789746619999999999999729998779886268
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEE--CC--EEEEECCCCCCC
Q ss_conf 856768986217888766731112899898289999999999996399847873--88--468866986447
Q gi|254780961|r 132 TQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRLKRGGVGYY--SK--FLHIDVGRVRSW 199 (200)
Q Consensus 132 sp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~~~a~~~~~gGvG~Y--s~--FVHiD~gp~R~W 199 (200)
||+||++||+++.|||++|+||+|+|+||++||+++++|+++|+.++.||||+| |+ |||||+||+|+|
T Consensus 82 sp~tN~~Lr~~s~gvA~~S~H~~G~A~D~~i~gv~~~~l~~~a~~l~~GGVG~Yp~sgs~FVHvD~G~vR~W 153 (153)
T pfam05951 82 SPATNAMLRSRSKGVAKKSYHMLGKAMDFRIPGVPLKKLRDAALKLQVGGVGYYPTSGSPFVHMDVGPVRHW 153 (153)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCCEEEECCCCCCCC
T ss_conf 988899998506675564711454288887189999999999997679827981788997388698988889
No 2
>COG3108 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=0 Score=346.09 Aligned_cols=149 Identities=46% Similarity=0.816 Sum_probs=145.9
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCEECHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 58983289998189884799998039834899999998872654279853678899999999999809988789951368
Q gi|254780961|r 52 DQEEVRTLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYR 131 (200)
Q Consensus 52 ~~~~~R~L~l~n~~TgE~~~~~y~~~g~y~~~~l~~l~~~lRD~R~~~~~~mDp~lld~L~~i~~~~g~~~Pi~I~SGYR 131 (200)
..+++|.|.++|.||||+...+|+.+|.|++++|..||+|+||||+||++.|||.++|+++.++...|...||+|+||||
T Consensus 33 ~~~~pR~l~l~~~~tge~~e~~~~~~g~y~~a~L~~L~rl~rd~r~ne~~~mdp~l~dlv~~l~~~~g~~~~i~V~SGYR 112 (185)
T COG3108 33 ATPEPRILKLYNLHTGEKAEAEFKDNGGYDQASLSGLNRLLRDWRQNEVVRMDPRLFDLVYQLKTLEGHRRPVQVTSGYR 112 (185)
T ss_pred CCCCCCEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHCCCEECCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 46776211056566154555531568873788887788866576617733147651999999999756776369985046
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEE--CCEEEEECCCCCCCC
Q ss_conf 856768986217888766731112899898289999999999996399847873--884688669864479
Q gi|254780961|r 132 TQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRLKRGGVGYY--SKFLHIDVGRVRSWT 200 (200)
Q Consensus 132 sp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~~~a~~~~~gGvG~Y--s~FVHiD~gp~R~Wt 200 (200)
||+||.+||++|.|||++|+||.|+|+||+|+|+++.+|++++++++.|||||| |+|||+|+||+|.|.
T Consensus 113 SPatNr~lr~~s~gvAk~S~Hm~g~A~D~~i~gV~l~~lr~~~~~~~~GGVGyYp~s~sVH~DvGpvR~W~ 183 (185)
T COG3108 113 SPATNRMLRSRSRGVAKKSLHMLGQAMDFQIPGVSLWELRNAALSMQGGGVGYYPHSNSVHMDVGPVRDWN 183 (185)
T ss_pred CHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEECCCCCCEEECCCCCCCCC
T ss_conf 80353777754112001020000100125548843999999997284885351468885673567646688
No 3
>pfam08291 Peptidase_M15_3 Peptidase M15.
Probab=99.92 E-value=1.4e-24 Score=168.89 Aligned_cols=88 Identities=31% Similarity=0.424 Sum_probs=82.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 98536788999999999998099887899513688567689862178887667311128998982899999999999963
Q gi|254780961|r 98 KQSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRL 177 (200)
Q Consensus 98 ~~~~~mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~~~a~~~ 177 (200)
+...+++++++++|+.+|+.+| .||.|+||||||++|+.+ |++++|+||+|+|+||.++|.+..++.+++++.
T Consensus 21 ~~~~~~~~~~~~~Le~lR~~~g--~Pi~ItSgyRs~~~N~~v-----gga~~S~H~~G~AaDi~v~g~~~~~l~~~~~~~ 93 (110)
T pfam08291 21 NTPTAEAPELLAKLQALREKLG--SPIVITSGYRSPVLNRAV-----GGARDSQHLTGLAADITVSGKNPEELAQIARAH 93 (110)
T ss_pred CCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEECCHHHHHHH-----CCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHC
T ss_conf 9966889999999999999849--988999787098897875-----799989989807887883599999999999982
Q ss_pred CCCEEEEE--CCEEEEE
Q ss_conf 99847873--8846886
Q gi|254780961|r 178 KRGGVGYY--SKFLHID 192 (200)
Q Consensus 178 ~~gGvG~Y--s~FVHiD 192 (200)
+.+|+|+| ++|||||
T Consensus 94 ~~~g~Gi~~~~~fvHlD 110 (110)
T pfam08291 94 GPFGIGIGGHNSFVHVD 110 (110)
T ss_pred CCCCEEEECCCCEEECC
T ss_conf 99978983799989659
No 4
>pfam02557 VanY D-alanyl-D-alanine carboxypeptidase.
Probab=97.01 E-value=0.0031 Score=39.88 Aligned_cols=66 Identities=24% Similarity=0.238 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHH-----HHCC-------CCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 36788999999999998099-8878995136885676898-----6217-------88876673111289989828999
Q gi|254780961|r 101 IDMDPQLFDFLWEIQQYFSV-PEYIYILSGYRTQETNKML-----SRRN-------RKIARKSQHVLGKAVDFYIPGVS 166 (200)
Q Consensus 101 ~~mDp~lld~L~~i~~~~g~-~~Pi~I~SGYRsp~~N~~l-----r~~~-------~G~Ak~S~H~~G~A~Di~i~g~~ 166 (200)
+.|.|...+.|..+...... .-.+.|+|||||++.-..| ...+ ....-.|.|-.|.|+||..++..
T Consensus 2 ~~L~~~aa~a~~~m~~aA~~~Gi~l~i~sgyRs~~~Q~~l~~~~~~~~~~~~~~~~~A~PG~SeH~~GlAvDi~~~~~~ 80 (131)
T pfam02557 2 ILLRPEAAKALEALFAAAKKEGIDLFIASGYRSYEYQQALYDKYVKGEGKEAALRYSAPPGYSEHQTGLAIDIGDPDNP 80 (131)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 5037999999999999999769927875253489999999999987410877864425899787656689994389887
No 5
>pfam01085 HH_signal Hedgehog amino-terminal signalling domain. For the carboxyl Hint module, see pfam01079. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation.
Probab=95.57 E-value=0.071 Score=31.64 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=56.6
Q ss_pred CCCCCCHHHHHHHHHHHH-----HHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHH---H
Q ss_conf 853678899999999999-----80998878995136885676898621788876673111289989828999999---9
Q gi|254780961|r 99 QSIDMDPQLFDFLWEIQQ-----YFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRS---L 170 (200)
Q Consensus 99 ~~~~mDp~lld~L~~i~~-----~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~---l 170 (200)
.-.-|-.+.-+.|..+.. +-|. -++|+-|+-. .. --++.|+|-.|+|+||..++.+..+ |
T Consensus 56 adR~Mt~Rck~kLn~La~~VmnqWpgV--kLrV~eaWde-d~---------~h~~~sLHyEGRAvDIttSDrdrsKygmL 123 (146)
T pfam01085 56 ADRLMTQRCKDKLNALAISVMNEWPGV--RLRVTEGWDE-DG---------HHGEESLHYEGRAVDITTSDRDRNKYGML 123 (146)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEECC-CC---------CCCCCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 006788999999999999999758984--8998863558-88---------87876413356256667063531356789
Q ss_pred HHHHHHCCCCEEEEE-CCEEEE
Q ss_conf 999996399847873-884688
Q gi|254780961|r 171 YKIAIRLKRGGVGYY-SKFLHI 191 (200)
Q Consensus 171 ~~~a~~~~~gGvG~Y-s~FVHi 191 (200)
++.|.+.++-=|-|- .++||+
T Consensus 124 ArLAveAGFDWV~Yesr~hiHc 145 (146)
T pfam01085 124 ARLAVEAGFDWVYYESKAHIHC 145 (146)
T ss_pred HHHHHHHCCCEEEECCCCEEEC
T ss_conf 9999981787699725555744
No 6
>TIGR01703 hybrid_clust hydroxylamine reductase; InterPro: IPR010048 Hybrid cluster proteins (HCP, or Prismane) have been identified in bacteria, archaea and eukaryotic protozoa. No specific function has yet been assigned to these proteins, but it may involve oxidoreductase enzymatic activity. These proteins contain one 4Fe-4S cluster, and one hybrid 4Fe-2O-2S cluster, the latter being similar to the Ni-Fe-S cluster found in carbon monoxide dehydrogenase enzymes (IPR010047 from INTERPRO) , . This subfamily is heterogeneous with respect to the presence or absence of a region of about 100 amino acids not far from the N terminus of the protein. Members have been described as monomeric. ; GO: 0016661 oxidoreductase activity acting on other nitrogenous compounds as donors, 0051536 iron-sulfur cluster binding, 0006118 electron transport, 0005737 cytoplasm.
Probab=90.31 E-value=0.54 Score=26.31 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=56.2
Q ss_pred CCCCCCCCHHHHHHHHHHH-HHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 7985367889999999999-980998878995136885676898621788876673111289989828999999999999
Q gi|254780961|r 97 SKQSIDMDPQLFDFLWEIQ-QYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAI 175 (200)
Q Consensus 97 ~~~~~~mDp~lld~L~~i~-~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~~~a~ 175 (200)
+=|+..|..+.|.+|.... +.+|.++|-.|.=| |..|+| |.|+|.+++.|.+..+
T Consensus 209 ~LE~Gk~~l~~M~LLDkAnT~tyG~PepT~V~ig----------------------~~~g~a--ILvsGHDL~DL~~LL~ 264 (567)
T TIGR01703 209 ALEVGKMNLEAMKLLDKANTDTYGEPEPTEVNIG----------------------TLEGKA--ILVSGHDLKDLEELLE 264 (567)
T ss_pred HHCCCEECHHHHHHHHHHHHHCCCCCCCEEECCC----------------------CCCCCE--EEEECCCHHHHHHHHH
T ss_conf 7503700024765642352424789521055153----------------------466874--6875688899999999
Q ss_pred HCCC----CEEEEE
Q ss_conf 6399----847873
Q gi|254780961|r 176 RLKR----GGVGYY 185 (200)
Q Consensus 176 ~~~~----gGvG~Y 185 (200)
+-+. .||-+|
T Consensus 265 QT~gmGle~GinVY 278 (567)
T TIGR01703 265 QTEGMGLETGINVY 278 (567)
T ss_pred HHHHCCCCCCCCEE
T ss_conf 87415644575435
No 7
>pfam06904 Extensin-like_C Extensin-like protein C-terminus. This family represents the C-terminus (approx. 120 residues) of a number of bacterial extensin-like proteins. Extensins are cell wall glycoproteins normally associated with plants, where they strengthen the cell wall in response to mechanical stress. Note that many family members of this family are hypothetical.
Probab=84.63 E-value=0.87 Score=25.07 Aligned_cols=45 Identities=29% Similarity=0.344 Sum_probs=33.8
Q ss_pred HHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEE
Q ss_conf 99999980998-8789951368856768986217888766731112899898
Q gi|254780961|r 111 LWEIQQYFSVP-EYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFY 161 (200)
Q Consensus 111 L~~i~~~~g~~-~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~ 161 (200)
.-+.+..+|.. .-|...+.|-|-.-|. .-+++-|+|-.|.|+||.
T Consensus 65 ~PaA~~~~g~~v~~i~~~gsY~CR~~~~------~~~~~lSEHa~gnAiDI~ 110 (178)
T pfam06904 65 QPAARRIFGSPVARIEHAGSYACRNRNG------RPGARLSEHARGNAIDIA 110 (178)
T ss_pred HHHHHHHCCCCCEEEEECCCEECCCCCC------CCCCCCCCCCCCCCEEEE
T ss_conf 7999987389863886056320377679------899870623465325465
No 8
>PRK05290 hydroxylamine reductase; Provisional
Probab=81.17 E-value=4.6 Score=20.71 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=51.4
Q ss_pred CCCCCCCHHHHHHHHHHH-HHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 985367889999999999-9809988789951368856768986217888766731112899898289999999999996
Q gi|254780961|r 98 KQSIDMDPQLFDFLWEIQ-QYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIR 176 (200)
Q Consensus 98 ~~~~~mDp~lld~L~~i~-~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~~~a~~ 176 (200)
-+...++.+.|.+|.+.. +.+|.++|-.|.-| +..|.| |.++|.++..|.+..++
T Consensus 196 l~~G~~n~~~M~LLD~ant~tyG~Pept~V~~g----------------------~~~g~~--ILVSGHDL~DLe~LL~Q 251 (540)
T PRK05290 196 LEIGKMNVKVMALLDAANTETYGHPEPTKVNIG----------------------VRKGKG--ILVSGHDLKDLEELLEQ 251 (540)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC----------------------CCCCCE--EEEECCCHHHHHHHHHH
T ss_conf 998688889999875664167899930687226----------------------768887--99969898999999997
Q ss_pred CCCCEEEEE
Q ss_conf 399847873
Q gi|254780961|r 177 LKRGGVGYY 185 (200)
Q Consensus 177 ~~~gGvG~Y 185 (200)
-...||-+|
T Consensus 252 Teg~GInVY 260 (540)
T PRK05290 252 TEGTGINVY 260 (540)
T ss_pred HCCCCEEEE
T ss_conf 407885798
No 9
>COG1876 VanY D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]
Probab=81.11 E-value=4.1 Score=20.99 Aligned_cols=54 Identities=20% Similarity=0.153 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------------HCCCCCCCCCCCCEEEEEEEE
Q ss_conf 99999999999809988789951368856768986------------217888766731112899898
Q gi|254780961|r 106 QLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLS------------RRNRKIARKSQHVLGKAVDFY 161 (200)
Q Consensus 106 ~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr------------~~~~G~Ak~S~H~~G~A~Di~ 161 (200)
+-++.+......-| .-+.+.|||||-+.-.++- .+..--...|+|-.|.|+||-
T Consensus 106 ~~l~~m~~aa~~~g--~~l~~~S~yrs~~~q~~lf~~~v~~~~~~~~~~~sa~pg~SeH~tG~A~Di~ 171 (241)
T COG1876 106 QALDEMQLAAARKG--VALLRWSAYRSYSRQHWLFDNDVFDPGLLPAATYSALPGWSEHQTGLAIDIS 171 (241)
T ss_pred HHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEC
T ss_conf 89999999998417--3775321011488988633244117034445454169995400262367402
No 10
>COG3921 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.22 E-value=0.92 Score=24.91 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=45.4
Q ss_pred HHHCCC-CCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC---CC-C----------------CHHHHHHHH
Q ss_conf 980998-87899513688567689862178887667311128998982---89-9----------------999999999
Q gi|254780961|r 116 QYFSVP-EYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYI---PG-V----------------SLRSLYKIA 174 (200)
Q Consensus 116 ~~~g~~-~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i---~g-~----------------~~~~l~~~a 174 (200)
..++.. .-|.-.|+|-|-.-|. .-..|-|.|-.|.|+||.- .+ . -++.+...+
T Consensus 192 ~~y~~~vt~I~~~g~Y~CR~~n~------r~~gk~SEHA~gNAlDIssf~LsdGk~i~v~~~~~~~~~eg~flraVr~aa 265 (300)
T COG3921 192 TAYGSGVTRIEHAGGYSCRNRNS------RRDGKISEHARGNALDISSFTLSDGKKIEVRSRGEGAFREGAFLRAVRAAA 265 (300)
T ss_pred HHHCCCCCEEECCCCCEEECCCC------CCCCCCCHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 76405662553166412340468------887761311035621133378438967786148887542118999999877
Q ss_pred HHCCCCEEE--EE---CCEEEEECCCCC
Q ss_conf 963998478--73---884688669864
Q gi|254780961|r 175 IRLKRGGVG--YY---SKFLHIDVGRVR 197 (200)
Q Consensus 175 ~~~~~gGvG--~Y---s~FVHiD~gp~R 197 (200)
-..-...+| +- .++.|+|.+..+
T Consensus 266 C~yF~TVLGPg~daaH~dHfHlDl~~rk 293 (300)
T COG3921 266 CLYFNTVLGPGSDAAHADHFHLDLRTRK 293 (300)
T ss_pred HHHHHCCCCCCCCHHHHHHCEECCHHCC
T ss_conf 7776125588987456545112211023
No 11
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=76.65 E-value=3.5 Score=21.43 Aligned_cols=55 Identities=25% Similarity=0.225 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH----HHCCC-C----CCCCCCCCEEEEE
Q ss_conf 889999999999980998878995136885676898----62178-8----8766731112899
Q gi|254780961|r 104 DPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKML----SRRNR-K----IARKSQHVLGKAV 158 (200)
Q Consensus 104 Dp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~l----r~~~~-G----~Ak~S~H~~G~A~ 158 (200)
|-..+..-.++-+.||.+-.++|+|..|||+-=... ++++. - ||-.|=|+-|+-+
T Consensus 10 D~~~m~~a~~~L~~fgi~~e~~V~SAHRTP~~~~~ya~~a~~~G~P~ViIAgAGgaAHLPGmvA 73 (159)
T TIGR01162 10 DLETMKKAAEILEEFGIPYELRVVSAHRTPELMFEYAKEAEERGIPKVIIAGAGGAAHLPGMVA 73 (159)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf 4789999999998559966789860677808899999999867899799840351133401001
No 12
>cd01914 HCP Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a central beta-sheet flanked by alpha-helices. HCP contains two iron-sulfur clusters, one of which is a [Fe4-S4] cubane cluster similar to that of carbon monoxide dehydrogenase (CODH). The second cluster, referred to as the hybrid cluster, is a hybrid [Fe4-S2-O2] center located at the interface of the three domains. Although the hybrid cluster is buried within the protein, it is accessible through a large hydrophobic cavity.
Probab=71.69 E-value=7.6 Score=19.37 Aligned_cols=63 Identities=21% Similarity=0.334 Sum_probs=50.4
Q ss_pred CCCCCCHHHHHHHHHHHH-HHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 853678899999999999-8099887899513688567689862178887667311128998982899999999999963
Q gi|254780961|r 99 QSIDMDPQLFDFLWEIQQ-YFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRL 177 (200)
Q Consensus 99 ~~~~mDp~lld~L~~i~~-~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~~~a~~~ 177 (200)
++..|..+.+++|.+... .+|.++|-.|.-| +..|+| |.++|.++..|.+..++.
T Consensus 82 ~~G~~n~~~M~lLD~a~t~~~G~P~pt~V~~~----------------------~~~g~~--ILVSGHDL~dL~~LL~QT 137 (423)
T cd01914 82 ETGRMNLKVMELLDKANTETYGHPEPTEVNIG----------------------VRAGKG--ILVSGHDLKDLEELLEQT 137 (423)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC----------------------CCCCCE--EEEECCCHHHHHHHHHHH
T ss_conf 97389999999872664366799941587336----------------------767887--999798989999999863
Q ss_pred CCCEEEEE
Q ss_conf 99847873
Q gi|254780961|r 178 KRGGVGYY 185 (200)
Q Consensus 178 ~~gGvG~Y 185 (200)
...||-+|
T Consensus 138 eg~GInVY 145 (423)
T cd01914 138 EGTGVDVY 145 (423)
T ss_pred CCCCEEEE
T ss_conf 79983077
No 13
>pfam05088 Bac_GDH Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyse the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.
Probab=67.73 E-value=2.4 Score=22.39 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=4.1
Q ss_pred HHHHHHCCCC
Q ss_conf 9988726542
Q gi|254780961|r 87 QLNRLLYDWH 96 (200)
Q Consensus 87 ~l~~~lRD~R 96 (200)
+|...|+|.|
T Consensus 98 ~l~~vL~dv~ 107 (1526)
T pfam05088 98 ELERVLADVR 107 (1526)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 14
>KOG2551 consensus
Probab=63.39 E-value=6.6 Score=19.73 Aligned_cols=51 Identities=18% Similarity=0.325 Sum_probs=35.8
Q ss_pred EEEEECCCCH--HHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHC
Q ss_conf 8995136885--67689862178887667311128998982899999999999963
Q gi|254780961|r 124 IYILSGYRTQ--ETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRL 177 (200)
Q Consensus 124 i~I~SGYRsp--~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~~~a~~~ 177 (200)
+.++|||+.+ ..-.+.-+ +-..--|+|..|.. |..++.....+|++.....
T Consensus 140 ~v~~SGf~~~~~~~~~~~~~--~~i~~PSLHi~G~~-D~iv~~~~s~~L~~~~~~a 192 (230)
T KOG2551 140 AVFISGFKFPSKKLDESAYK--RPLSTPSLHIFGET-DTIVPSERSEQLAESFKDA 192 (230)
T ss_pred EEEEECCCCCCCHHHHHHHC--CCCCCCEEEEECCC-CEEECCHHHHHHHHHCCCC
T ss_conf 99983477786234565533--67778705784365-5341326779999856787
No 15
>pfam04303 PrpF PrpF protein. PrpF is a protein found in the 2-methylcitrate pathway. It is structurally similar to DAP epimerase and proline racemase. This protein is likely to acts to isomerize trans-aconitate to cis-aconitate.
Probab=62.74 E-value=8.8 Score=18.99 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=31.8
Q ss_pred HCCCCCCCCHHHHHHHCCCCCCCHHCCCCCCEEEEEEECCCCCEEEEEEC-CCCEECHH
Q ss_conf 11210012212332100000110100589832899981898847999980-39834899
Q gi|254780961|r 26 VTSPIYSLSPDLIKYHQQSSMSSDLLDQEEVRTLKIYVVSTGSKAIVTFK-RGSQYNQE 83 (200)
Q Consensus 26 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~R~L~l~n~~TgE~~~~~y~-~~g~y~~~ 83 (200)
++-..|+.+-|+.+ ...+.-+++++|+|||..+...+. .+|+...+
T Consensus 98 saVgpfAie~GlV~------------~~~~~t~VrI~n~NT~~~i~~~v~~~~G~~~~~ 144 (371)
T pfam04303 98 AAVGPFAIEAGLVP------------ARIPVTAVRIWNVNTGKTIEAHVPTPNGQVQYD 144 (371)
T ss_pred HHHHHHHHHCCCCC------------CCCCCEEEEEEECCCCCEEEEEEECCCCCCCCC
T ss_conf 40145787639642------------689978999998478987999996689941335
No 16
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=56.03 E-value=16 Score=17.40 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEE--ECCCCHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 67889999999999980998878995--1368856768986217888766731112
Q gi|254780961|r 102 DMDPQLFDFLWEIQQYFSVPEYIYIL--SGYRTQETNKMLSRRNRKIARKSQHVLG 155 (200)
Q Consensus 102 ~mDp~lld~L~~i~~~~g~~~Pi~I~--SGYRsp~~N~~lr~~~~G~Ak~S~H~~G 155 (200)
..+|.+++.+ .+.++.++||.+. ||.||..--..|.+.+. ++-+|+.|
T Consensus 48 ~~~~~f~~~l---~~~~~~d~~ivv~C~sG~RS~~Aa~~L~~~Gf---~nV~ni~g 97 (117)
T cd01522 48 EINPNFLAEL---EEKVGKDRPVLLLCRSGNRSIAAAEAAAQAGF---TNVYNVLE 97 (117)
T ss_pred CCCCHHHHHH---HHHCCCCCEEEEECCCCCHHHHHHHHHHHCCC---CCEEEECC
T ss_conf 4581278999---97459998699988998159999999998598---77798189
No 17
>PRK12310 hydroxylamine reductase; Provisional
Probab=54.81 E-value=17 Score=17.20 Aligned_cols=64 Identities=22% Similarity=0.380 Sum_probs=51.5
Q ss_pred CCCCCCCHHHHHHHHHHH-HHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 985367889999999999-9809988789951368856768986217888766731112899898289999999999996
Q gi|254780961|r 98 KQSIDMDPQLFDFLWEIQ-QYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIR 176 (200)
Q Consensus 98 ~~~~~mDp~lld~L~~i~-~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~~~a~~ 176 (200)
-++..+..+.+++|.+.. +.+|.++|-.|.-|- ..|.| |.++|.++..|....++
T Consensus 86 l~~G~~n~~~M~lLD~ant~~~G~P~pt~V~~~~----------------------~~g~~--ILVSGHDL~dL~~LL~Q 141 (429)
T PRK12310 86 LEVGKANLKVMELLDKAHTETFGEPEPVEVTQGT----------------------VEGKA--ILVTGHNLKALEELLKQ 141 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC----------------------CCCCE--EEEECCCHHHHHHHHHH
T ss_conf 9974898899998606642678999406873367----------------------67888--99979899999999986
Q ss_pred CCCCEEEEE
Q ss_conf 399847873
Q gi|254780961|r 177 LKRGGVGYY 185 (200)
Q Consensus 177 ~~~gGvG~Y 185 (200)
....||-+|
T Consensus 142 Teg~GInVY 150 (429)
T PRK12310 142 TEGKGINVY 150 (429)
T ss_pred HCCCCEEEE
T ss_conf 379993077
No 18
>pfam01427 Peptidase_M15 D-ala-D-ala dipeptidase.
Probab=44.98 E-value=25 Score=16.26 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHH------------HHCC---------CCCCCCCCCCEEEE
Q ss_conf 536788999999999998099-8878995136885676898------------6217---------88876673111289
Q gi|254780961|r 100 SIDMDPQLFDFLWEIQQYFSV-PEYIYILSGYRTQETNKML------------SRRN---------RKIARKSQHVLGKA 157 (200)
Q Consensus 100 ~~~mDp~lld~L~~i~~~~g~-~~Pi~I~SGYRsp~~N~~l------------r~~~---------~G~Ak~S~H~~G~A 157 (200)
..-..++.-..|..+|..+.. .--+.|--+||+..--... .... ...|+.|.|..|.|
T Consensus 38 ~c~L~~~aA~aL~~aq~~l~~~G~~L~I~DayRP~~aq~~f~~W~~~p~~~~~~~~~~~~~~~~~~~~~a~~S~HsrG~a 117 (198)
T pfam01427 38 RCLGHKEPAEALAKADAYAAIAGQQLVLWDGYRPKVAQDCFMGWAAQPEPNLVKEHYVYNIWRVENINVASPSSHSRGSA 117 (198)
T ss_pred EEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 28868999999999999998679869997457839999999997638984430045457632112456677778687556
Q ss_pred EEEECC
Q ss_conf 989828
Q gi|254780961|r 158 VDFYIP 163 (200)
Q Consensus 158 ~Di~i~ 163 (200)
+|+.+-
T Consensus 118 VDLTL~ 123 (198)
T pfam01427 118 IDLTLR 123 (198)
T ss_pred CCCCCE
T ss_conf 527646
No 19
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846 Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process.
Probab=40.62 E-value=18 Score=17.08 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=25.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCC------CCEEEEECCEEEEECCCC
Q ss_conf 9989828999999999999639------984787388468866986
Q gi|254780961|r 157 AVDFYIPGVSLRSLYKIAIRLK------RGGVGYYSKFLHIDVGRV 196 (200)
Q Consensus 157 A~Di~i~g~~~~~l~~~a~~~~------~gGvG~Ys~FVHiD~gp~ 196 (200)
|+-.|..++-.-.|.++|-..+ +||| ||||+.|.
T Consensus 286 AvG~RFdDRvTGnl~~FAp~AkraaaeGrGGi------iHiDIDPa 325 (593)
T TIGR00118 286 AVGARFDDRVTGNLAKFAPNAKRAAAEGRGGI------IHIDIDPA 325 (593)
T ss_pred EEEEEECCCCCCCHHHHCHHHHHHHHCCCCCE------EEEEECCC
T ss_conf 53000056634877672316567541478736------99985376
No 20
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=36.43 E-value=34 Score=15.44 Aligned_cols=57 Identities=25% Similarity=0.169 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH----HHCCC----CCCCCCCCCEEEEEEE
Q ss_conf 889999999999980998878995136885676898----62178----8876673111289989
Q gi|254780961|r 104 DPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKML----SRRNR----KIARKSQHVLGKAVDF 160 (200)
Q Consensus 104 Dp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~l----r~~~~----G~Ak~S~H~~G~A~Di 160 (200)
|-..+.--.++-+.||..-..+|.|..|+|+-=... ++++. .||-.+-|+-|+-+-.
T Consensus 14 D~~~mk~Aa~~L~~fgv~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~ 78 (162)
T COG0041 14 DWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAK 78 (162)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHCCHHHHHC
T ss_conf 39999999999998499759999844679899999999998789759996575111062026555
No 21
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=35.12 E-value=11 Score=18.30 Aligned_cols=32 Identities=16% Similarity=0.441 Sum_probs=16.8
Q ss_pred EECCCCCHHHHHHHHHHCCCCEEEEECC--EEEEEC
Q ss_conf 9828999999999999639984787388--468866
Q gi|254780961|r 160 FYIPGVSLRSLYKIAIRLKRGGVGYYSK--FLHIDV 193 (200)
Q Consensus 160 i~i~g~~~~~l~~~a~~~~~gGvG~Ys~--FVHiD~ 193 (200)
++||...+..++.. .-..+||-.|.+ ||.=|+
T Consensus 313 LyiP~~~p~d~~~~--~~~~~~ikLYvrrVfI~d~~ 346 (701)
T PTZ00272 313 MFVPKRAPFDMFEP--NKKRNNIKLYVRRVFIMDNC 346 (701)
T ss_pred EECCCCCCCCCCCH--HHCCCCEEEEEEEEEECCCC
T ss_conf 74257798652020--20257458987534504551
No 22
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=33.54 E-value=38 Score=15.16 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=58.4
Q ss_pred EEEEECCCCCEEEEEECCCCEECHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHH
Q ss_conf 999818988479999803983489999999887265427985367889999999999980998-8789951368856768
Q gi|254780961|r 59 LKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSIDMDPQLFDFLWEIQQYFSVP-EYIYILSGYRTQETNK 137 (200)
Q Consensus 59 L~l~n~~TgE~~~~~y~~~g~y~~~~l~~l~~~lRD~R~~~~~~mDp~lld~L~~i~~~~g~~-~Pi~I~SGYRsp~~N~ 137 (200)
+.+...-.+=.+++.|-....+...-+ -.....-..++.-..|..+|..+... --+.|--+||+..--.
T Consensus 8 V~i~~~~p~I~~DLrYat~~NF~G~~i----------Y~~~~c~L~~~aA~aL~~aq~~l~~~G~~LkI~DaYRP~~aq~ 77 (188)
T PRK10178 8 VEITPATHGVEIDLVYATADNLTGKPI----------YRRARCLLHEDAEAALRKAVSIAQLAGLRLRIYDAYRPQQAQQ 77 (188)
T ss_pred EEEEECCCCCEEEEECCCCCCCCCCCC----------CCCCEEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
T ss_conf 686723899389804175767789756----------5898689789999999999999762797589984468699999
Q ss_pred HHHHCCC------CCCCCCCCCEEEEEEEECCC
Q ss_conf 9862178------88766731112899898289
Q gi|254780961|r 138 MLSRRNR------KIARKSQHVLGKAVDFYIPG 164 (200)
Q Consensus 138 ~lr~~~~------G~Ak~S~H~~G~A~Di~i~g 164 (200)
++-..-+ ..++.|.|-.|.|+|+.+-.
T Consensus 78 ~~w~~~pd~~yva~p~~gS~HsrG~aVDlTL~d 110 (188)
T PRK10178 78 VLWDFLPDPQYVADLGRGSNHSRGTAIDLTLVD 110 (188)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 999748995302587679977664136778876
No 23
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=33.40 E-value=16 Score=17.48 Aligned_cols=11 Identities=27% Similarity=0.624 Sum_probs=3.8
Q ss_pred ECCCCCHHHHH
Q ss_conf 82899999999
Q gi|254780961|r 161 YIPGVSLRSLY 171 (200)
Q Consensus 161 ~i~g~~~~~l~ 171 (200)
+||...+..++
T Consensus 276 ~iP~~aPfdl~ 286 (623)
T COG0326 276 FIPSKAPFDLF 286 (623)
T ss_pred ECCCCCCCCCC
T ss_conf 72578972201
No 24
>PRK09603 DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=32.78 E-value=18 Score=17.07 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=24.4
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCEECHHHHHHHHHHHCCC
Q ss_conf 58983289998189884799998039834899999998872654
Q gi|254780961|r 52 DQEEVRTLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDW 95 (200)
Q Consensus 52 ~~~~~R~L~l~n~~TgE~~~~~y~~~g~y~~~~l~~l~~~lRD~ 95 (200)
+.++.-+..||+.||||.++.--..+--|. .+|.|+--|=
T Consensus 1235 g~~~~Gk~~LyDGrTGe~fd~~VtVG~~Ym----lKL~HmVDDK 1274 (2890)
T PRK09603 1235 KIAMDGKMDLYDGRTGEKMRERVNVGYMYM----IKLHHLVDEK 1274 (2890)
T ss_pred CCCCCCCEEEECCCCCCCCCCCEEEEHHHH----HCCCHHHCCC
T ss_conf 999999889788998880578667856565----3251222026
No 25
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase; InterPro: IPR011963 Siderophores are low molecular weight iron-chelating compounds synthesised by many bacteria to aid in the aquisition of this vital trace element . Proteins in this entry are adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores. These proteins belong to the AMP-binding family and are mostly thought to activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. One of these proteins, however, is believed to differ in function, activating salicylate rather than DHB. The crystal structure of 2,3-dihydroxybenzoate-AMP ligase (P40871 from SWISSPROT) from Bacillus subtilis has been examined . This protein is composed of a large N-terminal domain (~420 aa) and a more compact C-terminal domain (~110 aa), with an overall "hammer-and-anvil" fold similar to that of firefly luciferase . The active site is located in a deep compartment located at the interface of the domains, with a p-loop thought to be involved in catalysis located at the entrance to the cavity. Relatively little conformational change was observed during catalysis.; GO: 0008668 (23-dihydroxybenzoyl)adenylate synthase activity, 0019290 siderophore biosynthetic process.
Probab=32.65 E-value=26 Score=16.11 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=20.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEE
Q ss_conf 988789951368856768986217888766731112899898
Q gi|254780961|r 120 VPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFY 161 (200)
Q Consensus 120 ~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~ 161 (200)
++.|+++--=||+|+||+.+=. ++-+=..|--+-+.
T Consensus 390 tRGPYTfRGYYk~p~HNA~~Fd------~~GFY~tGD~v~~t 425 (534)
T TIGR02275 390 TRGPYTFRGYYKAPEHNAKAFD------AEGFYYTGDLVKLT 425 (534)
T ss_pred ECCCCCEECCCCCHHHHHHHHC------CCCCEECCCEEEEC
T ss_conf 0288321136787456789744------78964415167886
No 26
>pfam11352 DUF3155 Protein of unknown function (DUF3155). This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=32.09 E-value=23 Score=16.41 Aligned_cols=66 Identities=15% Similarity=-0.012 Sum_probs=40.0
Q ss_pred HHHCCCCCCCCHHHHHHHCCCC-CCCHHCCCCCCEEEEEEECCCCCEEEEEECCCCEECHHHHHHHHHHH
Q ss_conf 2211210012212332100000-11010058983289998189884799998039834899999998872
Q gi|254780961|r 24 FFVTSPIYSLSPDLIKYHQQSS-MSSDLLDQEEVRTLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLL 92 (200)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~R~L~l~n~~TgE~~~~~y~~~g~y~~~~l~~l~~~l 92 (200)
.+..-|.|.++.|--+....+. .....--.+|.-.+--.|.||-|++ ||.+-.+-...|.+-||||
T Consensus 17 il~~vP~~~ie~ge~KpVTAARr~I~~~~i~pPAll~VrRnehttdR~---FW~ekGLF~AqY~EEnhFl 83 (90)
T pfam11352 17 ILELVPQYSIESGEDKPVTAARRFIHANGIQPPALLLVRRNEHTTDRY---FWAEKGLFGAQYVEENHFL 83 (90)
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHH---HHHCCCCHHHHHHHHCCCC
T ss_conf 998687532125887850899999998288996147874054311344---3320342013354424321
No 27
>pfam05042 Caleosin Caleosin related protein. This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies. This family is probably related to EF hands pfam00036.
Probab=29.79 E-value=31 Score=15.70 Aligned_cols=33 Identities=3% Similarity=0.085 Sum_probs=25.6
Q ss_pred EEEEEEECCCCCEE--EEEECCCCEECHHHHHHHH
Q ss_conf 28999818988479--9998039834899999998
Q gi|254780961|r 57 RTLKIYVVSTGSKA--IVTFKRGSQYNQEGLSQLN 89 (200)
Q Consensus 57 R~L~l~n~~TgE~~--~~~y~~~g~y~~~~l~~l~ 89 (200)
-.+.+.|.|-+..- +.+|-.+|+++|.-+.+|-
T Consensus 68 f~Iyi~nIhk~kHGSDsg~YD~eGRFvp~kFE~IF 102 (174)
T pfam05042 68 FPIYIKNIHKAKHGSDSGVYDTEGRFVPVNFEEIF 102 (174)
T ss_pred CEEEHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 45645332146667876653777735668899999
No 28
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=29.60 E-value=44 Score=14.76 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHC
Q ss_conf 85367889999999999980998878995136885676898621
Q gi|254780961|r 99 QSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRR 142 (200)
Q Consensus 99 ~~~~mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~ 142 (200)
+..++||.+.+.+..+++. | -|+.|+||==.+--...|.+-
T Consensus 70 ~~~~idpgF~eF~~~~~~~-~--ip~~IvS~G~d~~I~~~L~~~ 110 (219)
T PRK09552 70 ETAEIRNGFHEFVQFVNEN-N--ISFYVISGGMDFFVYPLLQGL 110 (219)
T ss_pred HCCCCCCCHHHHHHHHHHC-C--CCEEEECCCCHHHHHHHHHHC
T ss_conf 5699686799999999985-9--979998799469999999960
No 29
>PTZ00130 heat shock protein 90; Provisional
Probab=29.28 E-value=13 Score=17.92 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=11.1
Q ss_pred EECCCCCHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9828999999999999639984787388
Q gi|254780961|r 160 FYIPGVSLRSLYKIAIRLKRGGVGYYSK 187 (200)
Q Consensus 160 i~i~g~~~~~l~~~a~~~~~gGvG~Ys~ 187 (200)
++||...+........ ...||-.|.+
T Consensus 381 LfIP~~aP~~~~~~~~--k~~~IkLYvr 406 (824)
T PTZ00130 381 IYIPSKAPSINDHLFS--KQNSIKLYVR 406 (824)
T ss_pred EECCCCCCCCHHHHHH--HCCCEEEEEE
T ss_conf 9725878731135565--0277589987
No 30
>COG0085 RpoB DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]
Probab=27.30 E-value=48 Score=14.51 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=13.2
Q ss_pred EEEEEECCCCCEEEEEECCCCEECHHHHHHHHHHHCC
Q ss_conf 8999818988479999803983489999999887265
Q gi|254780961|r 58 TLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYD 94 (200)
Q Consensus 58 ~L~l~n~~TgE~~~~~y~~~g~y~~~~l~~l~~~lRD 94 (200)
+-.||+.+|||.++..-+.+--| +.+|.|+--|
T Consensus 924 k~~lydG~TGe~~~~~i~vG~~Y----~~kL~HmV~d 956 (1060)
T COG0085 924 KEVLYDGRTGEPFDAPIFVGVMY----YQKLHHMVDD 956 (1060)
T ss_pred CEEEECCCCCCCCCCCEEEEEHH----HHHHHHHHCC
T ss_conf 77844588887013517997247----7767766334
No 31
>PRK05218 heat shock protein 90; Provisional
Probab=26.87 E-value=20 Score=16.82 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=4.6
Q ss_pred EECCCCCHHHH
Q ss_conf 98289999999
Q gi|254780961|r 160 FYIPGVSLRSL 170 (200)
Q Consensus 160 i~i~g~~~~~l 170 (200)
++||...+..+
T Consensus 267 lyiP~~~p~~~ 277 (612)
T PRK05218 267 LYIPKKAPFDL 277 (612)
T ss_pred EECCCCCCHHH
T ss_conf 86478784444
No 32
>pfam07942 N2227 N2227-like protein. This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions.
Probab=26.45 E-value=50 Score=14.42 Aligned_cols=10 Identities=30% Similarity=0.946 Sum_probs=3.3
Q ss_pred HHHHHCCCCC
Q ss_conf 9887265427
Q gi|254780961|r 88 LNRLLYDWHS 97 (200)
Q Consensus 88 l~~~lRD~R~ 97 (200)
|.+|.|||-+
T Consensus 19 L~q~~RDWS~ 28 (268)
T pfam07942 19 LRQIVRDWSA 28 (268)
T ss_pred HHHHHCCCCH
T ss_conf 9877640643
No 33
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=26.39 E-value=50 Score=14.41 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=18.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 798536788999999999998099887899513
Q gi|254780961|r 97 SKQSIDMDPQLFDFLWEIQQYFSVPEYIYILSG 129 (200)
Q Consensus 97 ~~~~~~mDp~lld~L~~i~~~~g~~~Pi~I~SG 129 (200)
.....+||+++++.+.+..+.+|.+ +..+.||
T Consensus 319 ~~~p~~~d~~l~~~i~~~a~~~g~~-~~~m~SG 350 (406)
T TIGR03176 319 DEAPVPMNKEIVAIIEQLAKAEKLN-YRLMHSG 350 (406)
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCCC-CCCCCCH
T ss_conf 1798567999999999999966999-7554750
No 34
>PRK01229 N-glycosylase/DNA lyase; Provisional
Probab=25.57 E-value=37 Score=15.25 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=24.7
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999988726542798536788999999999
Q gi|254780961|r 83 EGLSQLNRLLYDWHSKQSIDMDPQLFDFLWEI 114 (200)
Q Consensus 83 ~~l~~l~~~lRD~R~~~~~~mDp~lld~L~~i 114 (200)
-++++.+||||-.--.++.-+|.+.+..|...
T Consensus 127 ~G~KEASHFLRNiG~~dlAIlDrHILr~l~~~ 158 (208)
T PRK01229 127 IGYKEASHFLRNVGFEDLAILDRHILRFLKRY 158 (208)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 66799999999658523577699999999982
No 35
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=24.53 E-value=54 Score=14.20 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 8536788999999999998099887899513688567689862
Q gi|254780961|r 99 QSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSR 141 (200)
Q Consensus 99 ~~~~mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~ 141 (200)
+..+|||.+.+.+..+++. | -|+.|+||==.+--...|.+
T Consensus 67 ~~~~idpgF~eF~~~~~~~-~--ip~~IvS~G~d~~I~~lL~~ 106 (214)
T TIGR03333 67 ETAEIREGFREFVAFINEH-G--IPFYVISGGMDFFVYPLLEG 106 (214)
T ss_pred HCCCCCCCHHHHHHHHHHC-C--CCEEEECCCCHHHHHHHHHH
T ss_conf 5598685799999999985-9--97899869933899999996
No 36
>TIGR00988 hip integration host factor, beta subunit; InterPro: IPR005685 Integration host factor (IHF) is a heterodimeric protein consisting of alpha (IPR005684 from INTERPRO) and beta subunits. IHF binds the minor groove of DNA in a sequence-specific manner to induce a large bend. This bending stabilises distinct DNA conformations that are required during several bacterial processes, such as recombination, transposition, replication and transcription .; GO: 0003677 DNA binding, 0005694 chromosome.
Probab=22.84 E-value=38 Score=15.15 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=18.4
Q ss_pred EECCCCCEEEEEECCCCEECHHHHHHHHHHHCCCCCCC
Q ss_conf 81898847999980398348999999988726542798
Q gi|254780961|r 62 YVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQ 99 (200)
Q Consensus 62 ~n~~TgE~~~~~y~~~g~y~~~~l~~l~~~lRD~R~~~ 99 (200)
.|+.||+++.+ |+.|+|- =+--..||| |.|.
T Consensus 62 RNPkTG~~V~l----d~K~VP~--FK~GK~LRD-R~N~ 92 (94)
T TIGR00988 62 RNPKTGESVAL----DGKYVPH--FKPGKELRD-RLNE 92 (94)
T ss_pred CCCCCCCEEEE----CCCCCCC--CCCCCCHHC-CCCC
T ss_conf 88998876654----7804284--048630110-0478
No 37
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=22.31 E-value=60 Score=13.94 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 899999999999809988789951368856768986217888766731112899898289999999999996
Q gi|254780961|r 105 PQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIR 176 (200)
Q Consensus 105 p~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~~~a~~ 176 (200)
-.=+++|.++++. +.+-|+.++|+|...++=.. =+..-|.|+.+...+.++|.+....
T Consensus 63 ~~Glell~~lr~~-~~~~~VI~iTA~~d~~~~~~-------------Al~~Ga~DYLvKPf~~erl~~~L~~ 120 (225)
T PRK10046 63 GRGINLLHELVQA-HYPGDVVFTTAASDMETVSE-------------AVRCGVFDYLIKPIAYERLGQTLTR 120 (225)
T ss_pred CCHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHH-------------HHHCCCCCCEECCCCHHHHHHHHHH
T ss_conf 9799999999964-87998899968999999999-------------9974998310289999999999999
No 38
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=21.38 E-value=63 Score=13.82 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=17.5
Q ss_pred CCEECHHHHHHHHHHHCCCCCCCC
Q ss_conf 983489999999887265427985
Q gi|254780961|r 77 GSQYNQEGLSQLNRLLYDWHSKQS 100 (200)
Q Consensus 77 ~g~y~~~~l~~l~~~lRD~R~~~~ 100 (200)
+-..+|-.+.+.-|+||.-|.+-+
T Consensus 135 epalvp~v~qkafhlmrs~rpgpv 158 (592)
T COG3960 135 EPALVPRVLQQAFHLMRSGRPGPV 158 (592)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 532417999999999745899976
No 39
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=21.15 E-value=37 Score=15.21 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=25.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999988726542798536788999999999
Q gi|254780961|r 83 EGLSQLNRLLYDWHSKQSIDMDPQLFDFLWEI 114 (200)
Q Consensus 83 ~~l~~l~~~lRD~R~~~~~~mDp~lld~L~~i 114 (200)
-++++.+||||..--.++.-+|...++.|...
T Consensus 129 iGyKEASHFLRNVG~~D~AIlDrHIlr~l~r~ 160 (210)
T COG1059 129 IGYKEASHFLRNVGFEDLAILDRHILRWLVRY 160 (210)
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 53799999999547168999999999999983
No 40
>pfam01573 Bromo_MP Bromovirus movement protein.
Probab=20.57 E-value=51 Score=14.35 Aligned_cols=18 Identities=33% Similarity=0.314 Sum_probs=14.5
Q ss_pred EEEEEEECCCCCEEEEEE
Q ss_conf 289998189884799998
Q gi|254780961|r 57 RTLKIYVVSTGSKAIVTF 74 (200)
Q Consensus 57 R~L~l~n~~TgE~~~~~y 74 (200)
=+|+|.|..|||++++.-
T Consensus 96 ~~lkL~N~aTge~~~vgt 113 (276)
T pfam01573 96 ATLKLKNLATGEEKDVGT 113 (276)
T ss_pred EEEEEECCCCCCCCCCCC
T ss_conf 256774025456202457
No 41
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=20.49 E-value=61 Score=13.88 Aligned_cols=22 Identities=5% Similarity=0.045 Sum_probs=11.9
Q ss_pred CEEEEEEECCCCCEEEEEECCC
Q ss_conf 3289998189884799998039
Q gi|254780961|r 56 VRTLKIYVVSTGSKAIVTFKRG 77 (200)
Q Consensus 56 ~R~L~l~n~~TgE~~~~~y~~~ 77 (200)
.=++++.+-+-++.+++.|+.+
T Consensus 255 ~l~v~~~~q~~~~yL~vey~nn 276 (512)
T PRK10153 255 TLSVRVVNQRQQCFLSVELRDN 276 (512)
T ss_pred EEEEEEEECCCCEEEEEEEEEC
T ss_conf 6899999659956999999976
No 42
>KOG4166 consensus
Probab=20.47 E-value=36 Score=15.27 Aligned_cols=10 Identities=40% Similarity=0.514 Sum_probs=7.6
Q ss_pred CCCCCCCEEE
Q ss_conf 7667311128
Q gi|254780961|r 147 ARKSQHVLGK 156 (200)
Q Consensus 147 Ak~S~H~~G~ 156 (200)
...|+||.|+
T Consensus 344 d~lSLhMLGM 353 (675)
T KOG4166 344 DELSLHMLGM 353 (675)
T ss_pred CCHHHHHHCC
T ss_conf 7201345416
No 43
>pfam00731 AIRC AIR carboxylase. Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.
Probab=20.22 E-value=67 Score=13.67 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH----CCC----CCCCCCCCCEEEEE
Q ss_conf 788999999999998099887899513688567689862----178----88766731112899
Q gi|254780961|r 103 MDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSR----RNR----KIARKSQHVLGKAV 158 (200)
Q Consensus 103 mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~----~~~----G~Ak~S~H~~G~A~ 158 (200)
-|-..++-...+-+.+|..-.+.|.|..|+|+.=....+ ++. .+|-.|-|+-|.-+
T Consensus 11 SD~~~~~~a~~~L~~~gi~~e~~V~SAHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpGvvA 74 (150)
T pfam00731 11 SDLPTMEKAAKVLKEFGIPYEVRVVSAHRTPERLFEYAKEAEARGIKVIIAGAGGAAHLPGMVA 74 (150)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHH
T ss_conf 3099999999999985997698676510387899999999997597399995684201200017
No 44
>KOG3678 consensus
Probab=20.10 E-value=23 Score=16.46 Aligned_cols=69 Identities=23% Similarity=0.364 Sum_probs=42.3
Q ss_pred CHHHHHHH--HHHHHHHCCCCCE---EEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC-----CCCCHHHHHHH
Q ss_conf 88999999--9999980998878---99513688567689862178887667311128998982-----89999999999
Q gi|254780961|r 104 DPQLFDFL--WEIQQYFSVPEYI---YILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYI-----PGVSLRSLYKI 173 (200)
Q Consensus 104 Dp~lld~L--~~i~~~~g~~~Pi---~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i-----~g~~~~~l~~~ 173 (200)
|.-|+.-| ..+++.+|...|| .++-++|+.+|...+ +| -|.++-+|..| .|..+..|.+.
T Consensus 564 nRSLLssltde~m~naCGI~~~iHR~kl~qA~eta~H~~~v-----~~-----a~~skq~DVFISYRRstGnQLASLiKV 633 (832)
T KOG3678 564 NRSLLSSLTDEMMQNACGITNPIHRLKLTQAFETAKHPDDV-----EV-----AMLSKQIDVFISYRRSTGNQLASLIKV 633 (832)
T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC-----CC-----CCCCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 38889871499998721766537899999999972289765-----54-----425788666888632640779999999
Q ss_pred HHHCCCCEE
Q ss_conf 996399847
Q gi|254780961|r 174 AIRLKRGGV 182 (200)
Q Consensus 174 a~~~~~gGv 182 (200)
.+++....|
T Consensus 634 ~LQL~GyrV 642 (832)
T KOG3678 634 LLQLRGYRV 642 (832)
T ss_pred HHHHCCCEE
T ss_conf 998627259
No 45
>COG2828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.00 E-value=64 Score=13.79 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=29.0
Q ss_pred HHCCCCCCCCHHHHHHHCCCCCCCHHCCCCCCEEEEEEECCCCCEEEEEEC-CCCE
Q ss_conf 211210012212332100000110100589832899981898847999980-3983
Q gi|254780961|r 25 FVTSPIYSLSPDLIKYHQQSSMSSDLLDQEEVRTLKIYVVSTGSKAIVTFK-RGSQ 79 (200)
Q Consensus 25 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~R~L~l~n~~TgE~~~~~y~-~~g~ 79 (200)
+.+-..|+.+.||.. ...+.-.++.+|.||+..+..... .+|+
T Consensus 99 ~AaVGpFAIe~GLV~------------a~~g~t~VRI~~~Nt~k~I~A~Vp~~nG~ 142 (378)
T COG2828 99 LAAVGPFAIEAGLVD------------AAEGVTAVRIWNVNTGKTIEAHVPTPNGQ 142 (378)
T ss_pred HHCCCHHHHHHCCCC------------CCCCCEEEEEEECCCCCEEEEEEECCCCC
T ss_conf 330341346517604------------77981699999626761599984158982
Done!