HHsearch alignment for GI: 254780961 and conserved domain: pfam01085
>pfam01085 HH_signal Hedgehog amino-terminal signalling domain. For the carboxyl Hint module, see pfam01079. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation.
Probab=95.57 E-value=0.071 Score=31.64 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=56.6
Q ss_pred CCCCCCHHHHHHHHHHHH-----HHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHH---H
Q ss_conf 853678899999999999-----80998878995136885676898621788876673111289989828999999---9
Q gi|254780961|r 99 QSIDMDPQLFDFLWEIQQ-----YFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRS---L 170 (200)
Q Consensus 99 ~~~~mDp~lld~L~~i~~-----~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~---l 170 (200)
T Consensus 56 adR~Mt~Rck~kLn~La~~VmnqWpgV--kLrV~eaWde-d~---------~h~~~sLHyEGRAvDIttSDrdrsKygmL 123 (146)
T pfam01085 56 ADRLMTQRCKDKLNALAISVMNEWPGV--RLRVTEGWDE-DG---------HHGEESLHYEGRAVDITTSDRDRNKYGML 123 (146)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEEECC-CC---------CCCCCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 006788999999999999999758984--8998863558-88---------87876413356256667063531356789
Q ss_pred HHHHHHCCCCEEEEE-CCEEEE
Q ss_conf 999996399847873-884688
Q gi|254780961|r 171 YKIAIRLKRGGVGYY-SKFLHI 191 (200)
Q Consensus 171 ~~~a~~~~~gGvG~Y-s~FVHi 191 (200)
T Consensus 124 ArLAveAGFDWV~Yesr~hiHc 145 (146)
T pfam01085 124 ARLAVEAGFDWVYYESKAHIHC 145 (146)
T ss_pred HHHHHHHCCCEEEECCCCEEEC
T ss_conf 9999981787699725555744