Query gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 200 No_of_seqs 223 out of 754 Neff 4.8 Searched_HMMs 33803 Date Wed Jun 1 19:31:09 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780961.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1lbu_A Muramoyl-pentapeptide 100.0 1.2E-33 3.6E-38 223.4 3.7 107 88-200 1-117 (123) 2 2vo9_A The Enzymatically Activ 97.8 0.00028 8.2E-09 45.8 10.3 112 88-199 17-154 (179) 3 >1vhh_A Sonic hedgehog, HHG-1, 97.1 0.0052 1.5E-07 38.1 9.4 88 96-195 59-155 (162) 4 >1r44_A D-alanyl-D-alanine dip 96.9 0.003 8.9E-08 39.6 6.2 67 98-164 37-128 (202) 5 >2pw0_A PRPF methylaconitate i 43.4 9.5 0.00028 18.4 1.1 48 28-83 114-162 (214) 6 >2h31_A Multifunctional protei 43.3 23 0.00067 16.1 3.6 39 102-140 15-53 (134) 7 >2ywx_A Phosphoribosylaminoimi 39.3 26 0.00078 15.7 3.5 54 103-156 10-68 (157) 8 >2j6l_A Aldehyde dehydrogenase 30.8 36 0.0011 14.9 4.9 54 54-107 34-87 (310) 9 >1oao_A CODH, carbon monoxide 29.9 37 0.0011 14.8 5.9 66 98-185 24-101 (220) 10 >2aee_A OPRT, oprtase, orotate 29.5 12 0.00036 17.7 -0.2 33 105-137 7-40 (104) 11 >3dez_A OPRT, oprtase, orotate 26.3 14 0.00042 17.3 -0.3 36 102-137 36-72 (159) 12 >1gnt_A HCP, hybrid cluster pr 23.8 48 0.0014 14.1 2.7 26 160-185 5-30 (130) 13 >2qsj_A DNA-binding response r 23.7 49 0.0014 14.1 2.7 73 97-183 50-127 (154) 14 >3kuu_A Phosphoribosylaminoimi 23.6 49 0.0014 14.1 3.6 55 102-156 22-84 (174) 15 >2voy_D Sarcoplasmic/endoplasm 23.1 46 0.0014 14.2 1.9 19 9-27 3-21 (26) 16 >1gnl_A HCP, hybrid cluster pr 22.7 51 0.0015 14.0 2.7 26 160-185 5-30 (127) 17 >3cnl_A YLQF, putative unchara 21.6 38 0.0011 14.7 1.2 26 76-103 60-85 (104) 18 >3i44_A Aldehyde dehydrogenase 21.4 54 0.0016 13.8 3.6 50 53-102 37-86 (308) 19 >3ifg_A Succinate-semialdehyde 21.0 55 0.0016 13.8 3.9 49 54-102 25-73 (285) No 1 >>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus G} (A:91-213) Probab=99.98 E-value=1.2e-33 Score=223.39 Aligned_cols=107 Identities=23% Similarity=0.266 Sum_probs=100.3 Q ss_pred HHHHHCCCCCC-----CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC Q ss_conf 98872654279-----8536788999999999998099887899513688567689862178887667311128998982 Q gi|254780961|r 88 LNRLLYDWHSK-----QSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYI 162 (200) Q Consensus 88 l~~~lRD~R~~-----~~~~mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i 162 (200) ||||||||+.+ +++.||++|+++|+.+++.+|. +||.|+||||||++|+.+ |+|++|+|++|+|+||.+ T Consensus 1 l~~~~RD~~~~~~~~~~~~~~~~~l~~~L~~lr~~~g~-~pi~I~SgyRs~~~N~~v-----Gga~~S~H~~G~A~Di~~ 74 (123) T 1lbu_A 1 LNRCNSDWSGGKVSAATARANALVTMWKLQAMRHAMGD-KPITVNGGFRSVTCNSNV-----GGASNSRHMYGHAADLGA 74 (123) T ss_dssp TCSSCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHTTS-CCCCEEECCCCHHHHHHH-----TCCTTCGGGGTCEEEECC T ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHH-----CCCCCCCCCCCCCCCCCC T ss_conf 76404777888666442210068999999999997488-426305762388886764-----368887323554331415 Q ss_pred CCCCHHHHHHHHHHCCC---CEEEEE--CCEEEEECCCCCCCC Q ss_conf 89999999999996399---847873--884688669864479 Q gi|254780961|r 163 PGVSLRSLYKIAIRLKR---GGVGYY--SKFLHIDVGRVRSWT 200 (200) Q Consensus 163 ~g~~~~~l~~~a~~~~~---gGvG~Y--s~FVHiD~gp~R~Wt 200 (200) ++.+..++.++|+++++ +|+|+| ++|||||++|.|+|+ T Consensus 75 ~~~~~~~l~~~a~~~~~~~~~g~g~y~~~~fvHiD~~~~r~W~ 117 (123) T 1lbu_A 75 GSQGFCALAQAARNHGFTEILGPGYPGHNDHTHVAGGDGRFWS 117 (123) T ss_dssp TTTCHHHHHHHGGGTTCSEEECTTSTTCSSSEEEECSSSCEEE T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCCCCCC T ss_conf 8869999999999769986502411799997881799987679 No 2 >2vo9_A The Enzymatically Active Domain of Endolysin {Listeria Monocytogenes Bacteriophage 500} (A:) Probab=97.83 E-value=0.00028 Score=45.84 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=75.5 Q ss_pred HHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHCC---------CCCCCCCCCCEEE Q ss_conf 9887265-427985367889999999999980-9988789951368856768986217---------8887667311128 Q gi|254780961|r 88 LNRLLYD-WHSKQSIDMDPQLFDFLWEIQQYF-SVPEYIYILSGYRTQETNKMLSRRN---------RKIARKSQHVLGK 156 (200) Q Consensus 88 l~~~lRD-~R~~~~~~mDp~lld~L~~i~~~~-g~~~Pi~I~SGYRsp~~N~~lr~~~---------~G~Ak~S~H~~G~ 156 (200) .++++-+ -.......+++++.+.|..+.+.+ ...-++.|+|||||++.-+.+-..+ .+.+..|.|-.|. T Consensus 17 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~g~~l~i~~gyRs~~~Q~~l~~~~~~~~~~~~~~~~~g~S~H~~G~ 96 (179) T 2vo9_A 17 EAWLIEKANRKLNAGGMYKITSDKTRNVIKKMAKEGIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGV 96 (179) T ss_dssp HHHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHTTTCCEEEEECCCCHHHHHHHHHBTTTBSSCCCCSCCTTSSGGGGTC T ss_pred CCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEE T ss_conf 44314677755761146788999999999999966897899844579899999985103534563331688889865214 Q ss_pred EEEEECCCCC------------HHHHHHHHHHCCCCEE---EEECCEEEEECCCCCCC Q ss_conf 9989828999------------9999999996399847---87388468866986447 Q gi|254780961|r 157 AVDFYIPGVS------------LRSLYKIAIRLKRGGV---GYYSKFLHIDVGRVRSW 199 (200) Q Consensus 157 A~Di~i~g~~------------~~~l~~~a~~~~~gGv---G~Ys~FVHiD~gp~R~W 199 (200) |+||.+...+ ...+.+.+...++.=- |+-..-=|..-.+...| T Consensus 97 AiDi~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gf~~~g~~~~~~e~wHf~y~g~~~~ 154 (179) T 2vo9_A 97 AVDLCLYTNDGKDVIWESTTSRWKKVVAAMKAEGFKWGGDWKSFKDYPHFELCDAVSG 154 (179) T ss_dssp EEEEEEECTTSSSEECCSSSHHHHHHHHHHHHTTCEEGGGSSSSCCTTEEESSCGGGT T ss_pred EEECCCCCCCCEECCCCCCCCHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCHHH T ss_conf 6750125578630678665535789999998668151477787889874011780226 No 3 >>1vhh_A Sonic hedgehog, HHG-1, VHH-1; signalling protein; 1.70A {Mus musculus} (A:) Probab=97.14 E-value=0.0052 Score=38.14 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=68.5 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH-----CCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHH- Q ss_conf 27985367889999999999980-----998878995136885676898621788876673111289989828999999- Q gi|254780961|r 96 HSKQSIDMDPQLFDFLWEIQQYF-----SVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRS- 169 (200) Q Consensus 96 R~~~~~~mDp~lld~L~~i~~~~-----g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~- 169 (200) .++.-.-|..++-+.|..+.... |. -+.|+-|+..+.+ -+.+|+|-.|+|+||...+.+..+ T Consensus 59 ~tgadR~MtkRck~kLn~La~~VmnqWpgV--kLrV~eaWde~~~----------~~~~sLHyeGRAvdittsd~d~sk~ 126 (162) T 1vhh_A 59 NTGADRLMTQRCKDKLNALAISVMNQWPGV--KLRVTEGWDEDGH----------HSEESLHYEGRAVDITTSDRDRSKY 126 (162) T ss_dssp SSSGGGEECHHHHHHHHHHHHHHHHHSTTC--CEEEEECSCSSCC----------SCTTCGGGGTCEEEEEETTCCGGGH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEEEECCCCC----------CCCCCCCCCCEEEEEEECCCCHHHH T ss_conf 877403563999999999999999867872--6887751326787----------7876534455167888357987899 Q ss_pred --HHHHHHHCCCCEEEEE-CCEEEEECCC Q ss_conf --9999996399847873-8846886698 Q gi|254780961|r 170 --LYKIAIRLKRGGVGYY-SKFLHIDVGR 195 (200) Q Consensus 170 --l~~~a~~~~~gGvG~Y-s~FVHiD~gp 195 (200) |++.|...++.=|-|- .++||+-+-+ T Consensus 127 g~Larlav~AGFDWV~Yes~~hihcSVk~ 155 (162) T 1vhh_A 127 GMLARLAVEAGFDWVYYESKAHIHCSVKA 155 (162) T ss_dssp HHHHHHHHHTTCSEEEEEETTEEEEECCC T ss_pred HHHHHHHHHCCCCEEEECCCCEEEEEEEC T ss_conf 99999998718987986267459999853 No 4 >>1r44_A D-alanyl-D-alanine dipeptidase; VANX, E.faecium, hydrolase; 2.25A {Enterococcus faecium} (A:) Probab=96.87 E-value=0.003 Score=39.56 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=50.4 Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHCC------------------------CCCCCCCCC Q ss_conf 985367889999999999980998-8789951368856768986217------------------------888766731 Q gi|254780961|r 98 KQSIDMDPQLFDFLWEIQQYFSVP-EYIYILSGYRTQETNKMLSRRN------------------------RKIARKSQH 152 (200) Q Consensus 98 ~~~~~mDp~lld~L~~i~~~~g~~-~Pi~I~SGYRsp~~N~~lr~~~------------------------~G~Ak~S~H 152 (200) .....++++..+.|..+++.+-.. -.+.|.|||||.+.-..+-... .-.+..|.| T Consensus 37 ~~~~~l~~~~~~~l~~~~~~a~~~G~~L~i~sgyRs~~~Q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~pg~S~H 116 (202) T 1r44_A 37 VNRIVGTYELAESLLKAKELAATQGYGLLLWDGYRPKRAVNCFMQWAAQPENNLTKESYYPNIDRTEMISKGYVASKSSH 116 (202) T ss_dssp SSSCEEEHHHHHHHHHHHHHTTSSSEEEEEEECCCCHHHHHHHHHHHTSCCCCSSHHHHCSSSCTTHHHHTSSSCSSCGG T ss_pred HHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC T ss_conf 53475499999999999998760797699997779999999999985476622012321764000122335676778887 Q ss_pred CEEEEEEEECCC Q ss_conf 112899898289 Q gi|254780961|r 153 VLGKAVDFYIPG 164 (200) Q Consensus 153 ~~G~A~Di~i~g 164 (200) -.|.|+|+.+.+ T Consensus 117 ~tG~AvDl~~~~ 128 (202) T 1r44_A 117 SRGSAIDLTLYR 128 (202) T ss_dssp GGTCEEEEEEEE T ss_pred CCCCEEEEEEEE T ss_conf 777648889985 No 5 >>2pw0_A PRPF methylaconitate isomerase; propionate catabolism, diaminopimelate epimerase like, aconitate binding, unknown function; HET: TRC; 1.57A {Shewanella oneidensis} PDB: 2pvz_A 2h9f_A (A:1-192,A:376-397) Probab=43.41 E-value=9.5 Score=18.40 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=29.7 Q ss_pred CCCCCCCHHHHHHHCCCCCCCHHCCCCCCEEEEEEECCCCCEEEEEEC-CCCEECHH Q ss_conf 210012212332100000110100589832899981898847999980-39834899 Q gi|254780961|r 28 SPIYSLSPDLIKYHQQSSMSSDLLDQEEVRTLKIYVVSTGSKAIVTFK-RGSQYNQE 83 (200) Q Consensus 28 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~R~L~l~n~~TgE~~~~~y~-~~g~y~~~ 83 (200) -+.|+..-|+++... ....+.-+++++|+|||..+..++. .+|++..+ T Consensus 114 VgpfAie~GLV~~~~--------~~~~~~t~VRI~ntNTgk~i~~~v~~~~G~~~~~ 162 (214) T 2pw0_A 114 VGAFAISNGLIDAAR--------IPRNGVCTVRIWQANIGKTIIAHVPITDGAVQET 162 (214) T ss_dssp HHHHHHHTTCSCGGG--------CCSSEEEEEEEEETTTTEEEEEEEEEETTEECCC T ss_pred CHHHHHHCCCCCCCC--------CCCCCEEEEEEEECCCCCEEEEEEECCCCEECCC T ss_conf 236799878865554--------7888779999996489857899962269851466 No 6 >>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} (A:261-394) Probab=43.29 E-value=23 Score=16.10 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=31.8 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 678899999999999809988789951368856768986 Q gi|254780961|r 102 DMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLS 140 (200) Q Consensus 102 ~mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr 140 (200) .-|-...+-...+-+.+|..-.++|.|.+|+|+.=.... T Consensus 15 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~ 53 (134) T 2h31_A 15 TSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIK 53 (134) T ss_dssp GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHH T ss_conf 326999999999998667754899984676989999999 No 7 >>2ywx_A Phosphoribosylaminoimidazole carboxylase catalytic subunit; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} (A:) Probab=39.26 E-value=26 Score=15.71 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=37.0 Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCC-----CCCCCCCCCEEE Q ss_conf 788999999999998099887899513688567689862178-----887667311128 Q gi|254780961|r 103 MDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNR-----KIARKSQHVLGK 156 (200) Q Consensus 103 mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~-----G~Ak~S~H~~G~ 156 (200) -|-..+.-...+-+.+|.+-.++|.|++|+|+.=....+... .+|-.|-|+-|. T Consensus 10 SD~~~~~~a~~~L~~~gi~~e~~V~SaHR~p~~l~~~~~~~~~~viIa~AG~aa~Lpgv 68 (157) T 2ywx_A 10 SDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGV 68 (157) T ss_dssp GGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHH T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCCH T ss_conf 34999999999999849976974321457999999998751115178751055556421 No 8 >>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A* (A:1-272,A:463-500) Probab=30.77 E-value=36 Score=14.88 Aligned_cols=54 Identities=6% Similarity=0.024 Sum_probs=41.8 Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCEECHHHHHHHHHHHCCCCCCCCCCCCHHH Q ss_conf 983289998189884799998039834899999998872654279853678899 Q gi|254780961|r 54 EEVRTLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSIDMDPQL 107 (200) Q Consensus 54 ~~~R~L~l~n~~TgE~~~~~y~~~g~y~~~~l~~l~~~lRD~R~~~~~~mDp~l 107 (200) +..+.+..+|+.|||.+..+.-....-+.++++...--++.|++-....-...| T Consensus 34 ~~g~~~~v~~P~tge~i~~~~~a~~~~v~~ai~~A~~A~~~w~~~~~~~R~~iL 87 (310) T 2j6l_A 34 GRGEVITTYCPANNEPIARVRQASVADYEETVKKAREAWKIWADIPAPKRGEIV 87 (310) T ss_dssp CCSCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH T ss_pred CCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 999979855799878889982899999999999999999988029999999999 No 9 >>1oao_A CODH, carbon monoxide dehydrogenase beta subunit; electron transfer, oxidoreductase, acetyl-COA formation, WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica} (A:1-45,A:258-432) Probab=29.88 E-value=37 Score=14.79 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=41.5 Q ss_pred CCCCCCCHHHHHHHHHHHHH--HCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCC--------- Q ss_conf 98536788999999999998--0998878995136885676898621788876673111289989828999--------- Q gi|254780961|r 98 KQSIDMDPQLFDFLWEIQQY--FSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVS--------- 166 (200) Q Consensus 98 ~~~~~mDp~lld~L~~i~~~--~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~--------- 166 (200) |.-...||..+++|...++. +|...|..|.-| -+.+..+-|.+.|.+ T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~g~P~~teV~lG----------------------vid~d~vnIlV~GH~p~l~~~i~~ 81 (220) T 1oao_A 24 NRDRTVDPAVLEMLVKSKDDKVTPQPVVSEANMG----------------------VLDPDQVNFVLHGHNPLLSEIIVQ 81 (220) T ss_dssp CSCCBCCHHHHHHHHHHHHHTCCCCCEEEEESGG----------------------GCCTTSEEEEEESSCHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCC----------------------CCCCCCCEEEEECCCCHHHHHHHH T ss_conf 2356899899999999998099998727704775----------------------236898669998998437899999 Q ss_pred -HHHHHHHHHHCCCCEEEEE Q ss_conf -9999999996399847873 Q gi|254780961|r 167 -LRSLYKIAIRLKRGGVGYY 185 (200) Q Consensus 167 -~~~l~~~a~~~~~gGvG~Y 185 (200) ++++...|++.+..||-+| T Consensus 82 ~l~el~~lakqagakGI~V~ 101 (220) T 1oao_A 82 AAREMEGEAKAAGAKGINLV 101 (220) T ss_dssp HHHHTHHHHHHTTCSCEEEE T ss_pred HHHHHHHHHHHCCCCCEEEE T ss_conf 99999999997489954999 No 10 >>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, protein structure initiative; 1.95A {Streptococcus pyogenes} (A:1-67,A:175-211) Probab=29.48 E-value=12 Score=17.73 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=23.2 Q ss_pred HHHHHHHHHHHH-HHCCCCCEEEEECCCCHHHHH Q ss_conf 899999999999-809988789951368856768 Q gi|254780961|r 105 PQLFDFLWEIQQ-YFSVPEYIYILSGYRTQETNK 137 (200) Q Consensus 105 p~lld~L~~i~~-~~g~~~Pi~I~SGYRsp~~N~ 137 (200) .++...|.++.. .+|..+||+..||-+||-+-. T Consensus 7 ~~la~~L~~~~avkfg~~~~FtLaSG~~SP~YvD 40 (104) T 2aee_A 7 SQIATQLLDIKAVYLKPEDPFTWASGIKSPIYTD 40 (104) T ss_dssp HHHHHHHHHTTSEEECTTSCEECGGGCEESEEEC T ss_pred HHHHHHHHHCCCEEECCCCCEEECCCCCCHHHEE T ss_conf 9999999977999968999989473477616614 No 11 >>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, magnesium, pyrimidine biosynthesis; 2.40A {Streptococcus mutans} (A:1-99,A:184-243) Probab=26.32 E-value=14 Score=17.33 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=26.9 Q ss_pred CCCHHHHHHHHHHHH-HHCCCCCEEEEECCCCHHHHH Q ss_conf 678899999999999-809988789951368856768 Q gi|254780961|r 102 DMDPQLFDFLWEIQQ-YFSVPEYIYILSGYRTQETNK 137 (200) Q Consensus 102 ~mDp~lld~L~~i~~-~~g~~~Pi~I~SGYRsp~~N~ 137 (200) .+..+++..|.++.. .+|..+||+..||-.||-+-. T Consensus 36 ~~~~~ia~~Llei~Avkfg~~~pFtlaSG~kSPiY~D 72 (159) T 3dez_A 36 TLAKDIARDLLDIKAVYLKPEEPFTWASGIKSPIYTD 72 (159) T ss_dssp HHHHHHHHHHHHHTSEEECTTSCEEC---CEESEEEC T ss_pred HHHHHHHHHHHHCCCEEECCCCCEEECCCCCCCHHEE T ss_conf 9999999999867988948999848173477507500 No 12 >>1gnt_A HCP, hybrid cluster protein; oxidoreductase, aerobic desulfovibrio vulgaris; HET: FSO; 1.25A {Desulfovibrio vulgaris} (A:235-364) Probab=23.80 E-value=48 Score=14.12 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=18.9 Q ss_pred EECCCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 98289999999999996399847873 Q gi|254780961|r 160 FYIPGVSLRSLYKIAIRLKRGGVGYY 185 (200) Q Consensus 160 i~i~g~~~~~l~~~a~~~~~gGvG~Y 185 (200) |.|+|.++..|.+..++....||-+| T Consensus 5 ILVSGHDL~dL~~LL~Qteg~GI~VY 30 (130) T 1gnt_A 5 ILISGHDLKDMAELLKQTEGTGVDVY 30 (130) T ss_dssp EEEESSCHHHHHHHHHHHTTTTCEEE T ss_pred EEEECCCHHHHHHHHHHCCCCCEEEE T ss_conf 99857637899999986258855777 No 13 >>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} (A:) Probab=23.71 E-value=49 Score=14.10 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=51.6 Q ss_pred CCCCCCCCHHH-----HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHH Q ss_conf 79853678899-----9999999998099887899513688567689862178887667311128998982899999999 Q gi|254780961|r 97 SKQSIDMDPQL-----FDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLY 171 (200) Q Consensus 97 ~~~~~~mDp~l-----ld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~ 171 (200) .-++.-+|-.+ ++++..+++.... -|+.|.|+|..+.+=... +.--|.|+...+.+..+|. T Consensus 50 ~~dlillD~~lP~~~G~~~~~~ir~~~~~-~~iivlt~~~~~~~~~~a-------------~~~Ga~~yl~Kp~~~~~l~ 115 (154) T 2qsj_A 50 TVDLILLDVNLPDAEAIDGLVRLKRFDPS-NAVALISGETDHELIRAA-------------LEAGADGFIPKSADPQVLI 115 (154) T ss_dssp CCSEEEECC------CHHHHHHHHHHCTT-SEEEEC-----CHHHHHH-------------HHTTCCBBCCTTSCHHHHH T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-CCEEEEEEECCHHHHHHH-------------HHCCCCEEEECCCCHHHHH T ss_conf 99699993788999868999999986899-939999845879999999-------------9869978997999999999 Q ss_pred HHHHHCCCCEEE Q ss_conf 999963998478 Q gi|254780961|r 172 KIAIRLKRGGVG 183 (200) Q Consensus 172 ~~a~~~~~gGvG 183 (200) ++....-.|..- T Consensus 116 ~~i~~~~~g~~~ 127 (154) T 2qsj_A 116 HAVSLILEGEIF 127 (154) T ss_dssp HHHHHHHTTCCB T ss_pred HHHHHHHCCCCC T ss_conf 999999879985 No 14 >>3kuu_A Phosphoribosylaminoimidazole carboxylase catalytic subunit PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structural genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* (A:) Probab=23.62 E-value=49 Score=14.09 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=38.5 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCC--------CCCCCCCCCEEE Q ss_conf 6788999999999998099887899513688567689862178--------887667311128 Q gi|254780961|r 102 DMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNR--------KIARKSQHVLGK 156 (200) Q Consensus 102 ~mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~--------G~Ak~S~H~~G~ 156 (200) .-|...++-...+-+.||..-.++|.|..|+|+.=....+... .+|-.|-|+-|. T Consensus 22 ~SD~~~~~~a~~~L~~~gi~~e~~V~SaHR~p~~l~~~~~~~~~~~~~viIa~AG~aa~Lpgv 84 (174) T 3kuu_A 22 KSDWATXQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGX 84 (174) T ss_dssp GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH T ss_conf 745999999999999849956999997770817888889999864983999814775445016 No 15 >>2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; hydrolasep-type ATPase, cryo-EM, helical reconstruction, membrane protein; 17.50A {Oryctolagus cuniculus} (D:) Probab=23.15 E-value=46 Score=14.22 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHHHHHC Q ss_conf 8999999998531122211 Q gi|254780961|r 9 ILKVIWIGLYVSVASFFVT 27 (200) Q Consensus 9 ~~~~~~~g~~~~~a~~~~~ 27 (200) ++|++.+|.+.+.++.-.+ T Consensus 3 FfRY~aiG~YVG~aTVgaa 21 (26) T 2voy_D 3 FFRYMAIGGYVGAATVGAA 21 (26) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred EEEEEEEEEEEEEEEECHH T ss_conf 6665854268743452024 No 16 >>1gnl_A HCP, hybrid cluster protein; anaerobic desulfovibrio desulfuricans, iron anomalous; HET: FSO; 1.25A {Desulfovibrio desulfuricans} (A:231-357) Probab=22.72 E-value=51 Score=13.99 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=18.0 Q ss_pred EECCCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 98289999999999996399847873 Q gi|254780961|r 160 FYIPGVSLRSLYKIAIRLKRGGVGYY 185 (200) Q Consensus 160 i~i~g~~~~~l~~~a~~~~~gGvG~Y 185 (200) |.|+|.++..|.+..++....||-+| T Consensus 5 ILVSGHDL~dL~~LL~Qteg~Gi~VY 30 (127) T 1gnl_A 5 ILISGHDLRDLEMLLKQTEGTGVDVY 30 (127) T ss_dssp EEEESSCHHHHHHHHHHHTTTTCEEE T ss_pred EEEECCCHHHHHHHHHHHCCCCEEEE T ss_conf 99857637889999987148865777 No 17 >>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* (A:159-262) Probab=21.60 E-value=38 Score=14.73 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=17.6 Q ss_pred CCCEECHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 3983489999999887265427985367 Q gi|254780961|r 76 RGSQYNQEGLSQLNRLLYDWHSKQSIDM 103 (200) Q Consensus 76 ~~g~y~~~~l~~l~~~lRD~R~~~~~~m 103 (200) .+|..+-+ ....+||+|||.++...+ T Consensus 60 kgg~~D~~--~aa~~il~d~r~Gklg~~ 85 (104) T 3cnl_A 60 KGGVPDIE--RALMLFFTEVAQGKAGRV 85 (104) T ss_dssp GGGCBCHH--HHHHHHHHHHHTTTTCSC T ss_pred CCCCCCHH--HHHHHHHHHHHCCCCCEE T ss_conf 19972799--999999999975998755 No 18 >>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae} (A:1-273,A:463-497) Probab=21.41 E-value=54 Score=13.82 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=41.2 Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCEECHHHHHHHHHHHCCCCCCCCCC Q ss_conf 89832899981898847999980398348999999988726542798536 Q gi|254780961|r 53 QEEVRTLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSID 102 (200) Q Consensus 53 ~~~~R~L~l~n~~TgE~~~~~y~~~g~y~~~~l~~l~~~lRD~R~~~~~~ 102 (200) ..+.+.+..+|+.|||-+-.+...+.+-+.+++.....-++.|+.-.... T Consensus 37 ~~~~~~~~v~nP~tge~i~~~~~~~~~~v~~Ai~aA~~A~~~W~~~~~~~ 86 (308) T 3i44_A 37 PSTPHDLYVIDPSTEEACAVISLGSTRDADKAINAAKKAFQTWKTTSPHE 86 (308) T ss_dssp CSSCCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHH T ss_pred CCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 99999898767998787789808999999999999999999870199999 No 19 >>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid; 2.70A {Burkholderia pseudomallei 1710B} PDB: 3ifh_Q (A:1-260,A:460-484) Probab=21.00 E-value=55 Score=13.77 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=39.4 Q ss_pred CCCEEEEEEECCCCCEEEEEECCCCEECHHHHHHHHHHHCCCCCCCCCC Q ss_conf 9832899981898847999980398348999999988726542798536 Q gi|254780961|r 54 EEVRTLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSID 102 (200) Q Consensus 54 ~~~R~L~l~n~~TgE~~~~~y~~~g~y~~~~l~~l~~~lRD~R~~~~~~ 102 (200) ...+++..+|+.|||.+-.+-..+.+.+.+++...-.-++.|++..... T Consensus 25 ~~~~~~~v~nP~~ge~i~~v~~~~~~di~~Ai~aA~~A~~~W~~~~~~~ 73 (285) T 3ifg_A 25 DSDATFEVFDPATGESLGTVPKMGAAETARAIEAAQAAWAGWRMKTAKE 73 (285) T ss_dssp TTCCEEEEECTTTCCEEEEEECBCHHHHHHHHHHHHHHHHHHHTSCHHH T ss_pred CCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHH T ss_conf 9999898467999889999829999999999999999999870099999 Done!