Query         gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 200
No_of_seqs    223 out of 754
Neff          4.8 
Searched_HMMs 33803
Date          Wed Jun  1 19:31:09 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780961.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1lbu_A Muramoyl-pentapeptide  100.0 1.2E-33 3.6E-38  223.4   3.7  107   88-200     1-117 (123)
  2 2vo9_A The Enzymatically Activ  97.8 0.00028 8.2E-09   45.8  10.3  112   88-199    17-154 (179)
  3 >1vhh_A Sonic hedgehog, HHG-1,  97.1  0.0052 1.5E-07   38.1   9.4   88   96-195    59-155 (162)
  4 >1r44_A D-alanyl-D-alanine dip  96.9   0.003 8.9E-08   39.6   6.2   67   98-164    37-128 (202)
  5 >2pw0_A PRPF methylaconitate i  43.4     9.5 0.00028   18.4   1.1   48   28-83    114-162 (214)
  6 >2h31_A Multifunctional protei  43.3      23 0.00067   16.1   3.6   39  102-140    15-53  (134)
  7 >2ywx_A Phosphoribosylaminoimi  39.3      26 0.00078   15.7   3.5   54  103-156    10-68  (157)
  8 >2j6l_A Aldehyde dehydrogenase  30.8      36  0.0011   14.9   4.9   54   54-107    34-87  (310)
  9 >1oao_A CODH, carbon monoxide   29.9      37  0.0011   14.8   5.9   66   98-185    24-101 (220)
 10 >2aee_A OPRT, oprtase, orotate  29.5      12 0.00036   17.7  -0.2   33  105-137     7-40  (104)
 11 >3dez_A OPRT, oprtase, orotate  26.3      14 0.00042   17.3  -0.3   36  102-137    36-72  (159)
 12 >1gnt_A HCP, hybrid cluster pr  23.8      48  0.0014   14.1   2.7   26  160-185     5-30  (130)
 13 >2qsj_A DNA-binding response r  23.7      49  0.0014   14.1   2.7   73   97-183    50-127 (154)
 14 >3kuu_A Phosphoribosylaminoimi  23.6      49  0.0014   14.1   3.6   55  102-156    22-84  (174)
 15 >2voy_D Sarcoplasmic/endoplasm  23.1      46  0.0014   14.2   1.9   19    9-27      3-21  (26)
 16 >1gnl_A HCP, hybrid cluster pr  22.7      51  0.0015   14.0   2.7   26  160-185     5-30  (127)
 17 >3cnl_A YLQF, putative unchara  21.6      38  0.0011   14.7   1.2   26   76-103    60-85  (104)
 18 >3i44_A Aldehyde dehydrogenase  21.4      54  0.0016   13.8   3.6   50   53-102    37-86  (308)
 19 >3ifg_A Succinate-semialdehyde  21.0      55  0.0016   13.8   3.9   49   54-102    25-73  (285)

No 1  
>>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus G} (A:91-213)
Probab=99.98  E-value=1.2e-33  Score=223.39  Aligned_cols=107  Identities=23%  Similarity=0.266  Sum_probs=100.3

Q ss_pred             HHHHHCCCCCC-----CCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC
Q ss_conf             98872654279-----8536788999999999998099887899513688567689862178887667311128998982
Q gi|254780961|r   88 LNRLLYDWHSK-----QSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYI  162 (200)
Q Consensus        88 l~~~lRD~R~~-----~~~~mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i  162 (200)
                      ||||||||+.+     +++.||++|+++|+.+++.+|. +||.|+||||||++|+.+     |+|++|+|++|+|+||.+
T Consensus         1 l~~~~RD~~~~~~~~~~~~~~~~~l~~~L~~lr~~~g~-~pi~I~SgyRs~~~N~~v-----Gga~~S~H~~G~A~Di~~   74 (123)
T 1lbu_A            1 LNRCNSDWSGGKVSAATARANALVTMWKLQAMRHAMGD-KPITVNGGFRSVTCNSNV-----GGASNSRHMYGHAADLGA   74 (123)
T ss_dssp             TCSSCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHTTS-CCCCEEECCCCHHHHHHH-----TCCTTCGGGGTCEEEECC
T ss_pred             HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHH-----CCCCCCCCCCCCCCCCCC
T ss_conf             76404777888666442210068999999999997488-426305762388886764-----368887323554331415


Q ss_pred             CCCCHHHHHHHHHHCCC---CEEEEE--CCEEEEECCCCCCCC
Q ss_conf             89999999999996399---847873--884688669864479
Q gi|254780961|r  163 PGVSLRSLYKIAIRLKR---GGVGYY--SKFLHIDVGRVRSWT  200 (200)
Q Consensus       163 ~g~~~~~l~~~a~~~~~---gGvG~Y--s~FVHiD~gp~R~Wt  200 (200)
                      ++.+..++.++|+++++   +|+|+|  ++|||||++|.|+|+
T Consensus        75 ~~~~~~~l~~~a~~~~~~~~~g~g~y~~~~fvHiD~~~~r~W~  117 (123)
T 1lbu_A           75 GSQGFCALAQAARNHGFTEILGPGYPGHNDHTHVAGGDGRFWS  117 (123)
T ss_dssp             TTTCHHHHHHHGGGTTCSEEECTTSTTCSSSEEEECSSSCEEE
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCCCCCC
T ss_conf             8869999999999769986502411799997881799987679


No 2  
>2vo9_A The Enzymatically Active Domain of Endolysin {Listeria Monocytogenes Bacteriophage 500} (A:)
Probab=97.83  E-value=0.00028  Score=45.84  Aligned_cols=112  Identities=14%  Similarity=0.099  Sum_probs=75.5

Q ss_pred             HHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHCC---------CCCCCCCCCCEEE
Q ss_conf             9887265-427985367889999999999980-9988789951368856768986217---------8887667311128
Q gi|254780961|r   88 LNRLLYD-WHSKQSIDMDPQLFDFLWEIQQYF-SVPEYIYILSGYRTQETNKMLSRRN---------RKIARKSQHVLGK  156 (200)
Q Consensus        88 l~~~lRD-~R~~~~~~mDp~lld~L~~i~~~~-g~~~Pi~I~SGYRsp~~N~~lr~~~---------~G~Ak~S~H~~G~  156 (200)
                      .++++-+ -.......+++++.+.|..+.+.+ ...-++.|+|||||++.-+.+-..+         .+.+..|.|-.|.
T Consensus        17 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~g~~l~i~~gyRs~~~Q~~l~~~~~~~~~~~~~~~~~g~S~H~~G~   96 (179)
T 2vo9_A           17 EAWLIEKANRKLNAGGMYKITSDKTRNVIKKMAKEGIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGV   96 (179)
T ss_dssp             HHHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHTTTCCEEEEECCCCHHHHHHHHHBTTTBSSCCCCSCCTTSSGGGGTC
T ss_pred             CCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEE
T ss_conf             44314677755761146788999999999999966897899844579899999985103534563331688889865214


Q ss_pred             EEEEECCCCC------------HHHHHHHHHHCCCCEE---EEECCEEEEECCCCCCC
Q ss_conf             9989828999------------9999999996399847---87388468866986447
Q gi|254780961|r  157 AVDFYIPGVS------------LRSLYKIAIRLKRGGV---GYYSKFLHIDVGRVRSW  199 (200)
Q Consensus       157 A~Di~i~g~~------------~~~l~~~a~~~~~gGv---G~Ys~FVHiD~gp~R~W  199 (200)
                      |+||.+...+            ...+.+.+...++.=-   |+-..-=|..-.+...|
T Consensus        97 AiDi~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gf~~~g~~~~~~e~wHf~y~g~~~~  154 (179)
T 2vo9_A           97 AVDLCLYTNDGKDVIWESTTSRWKKVVAAMKAEGFKWGGDWKSFKDYPHFELCDAVSG  154 (179)
T ss_dssp             EEEEEEECTTSSSEECCSSSHHHHHHHHHHHHTTCEEGGGSSSSCCTTEEESSCGGGT
T ss_pred             EEECCCCCCCCEECCCCCCCCHHHHHHHHHHHCCEECCCCCCCCCCCCCEEECCCHHH
T ss_conf             6750125578630678665535789999998668151477787889874011780226


No 3  
>>1vhh_A Sonic hedgehog, HHG-1, VHH-1; signalling protein; 1.70A {Mus musculus} (A:)
Probab=97.14  E-value=0.0052  Score=38.14  Aligned_cols=88  Identities=19%  Similarity=0.183  Sum_probs=68.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHH-----CCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHH-
Q ss_conf             27985367889999999999980-----998878995136885676898621788876673111289989828999999-
Q gi|254780961|r   96 HSKQSIDMDPQLFDFLWEIQQYF-----SVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRS-  169 (200)
Q Consensus        96 R~~~~~~mDp~lld~L~~i~~~~-----g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~-  169 (200)
                      .++.-.-|..++-+.|..+....     |.  -+.|+-|+..+.+          -+.+|+|-.|+|+||...+.+..+ 
T Consensus        59 ~tgadR~MtkRck~kLn~La~~VmnqWpgV--kLrV~eaWde~~~----------~~~~sLHyeGRAvdittsd~d~sk~  126 (162)
T 1vhh_A           59 NTGADRLMTQRCKDKLNALAISVMNQWPGV--KLRVTEGWDEDGH----------HSEESLHYEGRAVDITTSDRDRSKY  126 (162)
T ss_dssp             SSSGGGEECHHHHHHHHHHHHHHHHHSTTC--CEEEEECSCSSCC----------SCTTCGGGGTCEEEEEETTCCGGGH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEEEECCCCC----------CCCCCCCCCCEEEEEEECCCCHHHH
T ss_conf             877403563999999999999999867872--6887751326787----------7876534455167888357987899


Q ss_pred             --HHHHHHHCCCCEEEEE-CCEEEEECCC
Q ss_conf             --9999996399847873-8846886698
Q gi|254780961|r  170 --LYKIAIRLKRGGVGYY-SKFLHIDVGR  195 (200)
Q Consensus       170 --l~~~a~~~~~gGvG~Y-s~FVHiD~gp  195 (200)
                        |++.|...++.=|-|- .++||+-+-+
T Consensus       127 g~Larlav~AGFDWV~Yes~~hihcSVk~  155 (162)
T 1vhh_A          127 GMLARLAVEAGFDWVYYESKAHIHCSVKA  155 (162)
T ss_dssp             HHHHHHHHHTTCSEEEEEETTEEEEECCC
T ss_pred             HHHHHHHHHCCCCEEEECCCCEEEEEEEC
T ss_conf             99999998718987986267459999853


No 4  
>>1r44_A D-alanyl-D-alanine dipeptidase; VANX, E.faecium, hydrolase; 2.25A {Enterococcus faecium} (A:)
Probab=96.87  E-value=0.003  Score=39.56  Aligned_cols=67  Identities=19%  Similarity=0.234  Sum_probs=50.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHCC------------------------CCCCCCCCC
Q ss_conf             985367889999999999980998-8789951368856768986217------------------------888766731
Q gi|254780961|r   98 KQSIDMDPQLFDFLWEIQQYFSVP-EYIYILSGYRTQETNKMLSRRN------------------------RKIARKSQH  152 (200)
Q Consensus        98 ~~~~~mDp~lld~L~~i~~~~g~~-~Pi~I~SGYRsp~~N~~lr~~~------------------------~G~Ak~S~H  152 (200)
                      .....++++..+.|..+++.+-.. -.+.|.|||||.+.-..+-...                        .-.+..|.|
T Consensus        37 ~~~~~l~~~~~~~l~~~~~~a~~~G~~L~i~sgyRs~~~Q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~pg~S~H  116 (202)
T 1r44_A           37 VNRIVGTYELAESLLKAKELAATQGYGLLLWDGYRPKRAVNCFMQWAAQPENNLTKESYYPNIDRTEMISKGYVASKSSH  116 (202)
T ss_dssp             SSSCEEEHHHHHHHHHHHHHTTSSSEEEEEEECCCCHHHHHHHHHHHTSCCCCSSHHHHCSSSCTTHHHHTSSSCSSCGG
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             53475499999999999998760797699997779999999999985476622012321764000122335676778887


Q ss_pred             CEEEEEEEECCC
Q ss_conf             112899898289
Q gi|254780961|r  153 VLGKAVDFYIPG  164 (200)
Q Consensus       153 ~~G~A~Di~i~g  164 (200)
                      -.|.|+|+.+.+
T Consensus       117 ~tG~AvDl~~~~  128 (202)
T 1r44_A          117 SRGSAIDLTLYR  128 (202)
T ss_dssp             GGTCEEEEEEEE
T ss_pred             CCCCEEEEEEEE
T ss_conf             777648889985


No 5  
>>2pw0_A PRPF methylaconitate isomerase; propionate catabolism, diaminopimelate epimerase like, aconitate binding, unknown function; HET: TRC; 1.57A {Shewanella oneidensis} PDB: 2pvz_A 2h9f_A (A:1-192,A:376-397)
Probab=43.41  E-value=9.5  Score=18.40  Aligned_cols=48  Identities=17%  Similarity=0.304  Sum_probs=29.7

Q ss_pred             CCCCCCCHHHHHHHCCCCCCCHHCCCCCCEEEEEEECCCCCEEEEEEC-CCCEECHH
Q ss_conf             210012212332100000110100589832899981898847999980-39834899
Q gi|254780961|r   28 SPIYSLSPDLIKYHQQSSMSSDLLDQEEVRTLKIYVVSTGSKAIVTFK-RGSQYNQE   83 (200)
Q Consensus        28 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~R~L~l~n~~TgE~~~~~y~-~~g~y~~~   83 (200)
                      -+.|+..-|+++...        ....+.-+++++|+|||..+..++. .+|++..+
T Consensus       114 VgpfAie~GLV~~~~--------~~~~~~t~VRI~ntNTgk~i~~~v~~~~G~~~~~  162 (214)
T 2pw0_A          114 VGAFAISNGLIDAAR--------IPRNGVCTVRIWQANIGKTIIAHVPITDGAVQET  162 (214)
T ss_dssp             HHHHHHHTTCSCGGG--------CCSSEEEEEEEEETTTTEEEEEEEEEETTEECCC
T ss_pred             CHHHHHHCCCCCCCC--------CCCCCEEEEEEEECCCCCEEEEEEECCCCEECCC
T ss_conf             236799878865554--------7888779999996489857899962269851466


No 6  
>>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} (A:261-394)
Probab=43.29  E-value=23  Score=16.10  Aligned_cols=39  Identities=10%  Similarity=0.095  Sum_probs=31.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf             678899999999999809988789951368856768986
Q gi|254780961|r  102 DMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLS  140 (200)
Q Consensus       102 ~mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr  140 (200)
                      .-|-...+-...+-+.+|..-.++|.|.+|+|+.=....
T Consensus        15 ~SD~~~~~~~~~~L~~~gi~~~~~V~SaHR~p~~~~~~~   53 (134)
T 2h31_A           15 TSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIK   53 (134)
T ss_dssp             GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHH
T ss_conf             326999999999998667754899984676989999999


No 7  
>>2ywx_A Phosphoribosylaminoimidazole carboxylase catalytic subunit; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} (A:)
Probab=39.26  E-value=26  Score=15.71  Aligned_cols=54  Identities=22%  Similarity=0.230  Sum_probs=37.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCC-----CCCCCCCCCEEE
Q ss_conf             788999999999998099887899513688567689862178-----887667311128
Q gi|254780961|r  103 MDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNR-----KIARKSQHVLGK  156 (200)
Q Consensus       103 mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~-----G~Ak~S~H~~G~  156 (200)
                      -|-..+.-...+-+.+|.+-.++|.|++|+|+.=....+...     .+|-.|-|+-|.
T Consensus        10 SD~~~~~~a~~~L~~~gi~~e~~V~SaHR~p~~l~~~~~~~~~~viIa~AG~aa~Lpgv   68 (157)
T 2ywx_A           10 SDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGV   68 (157)
T ss_dssp             GGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCCH
T ss_conf             34999999999999849976974321457999999998751115178751055556421


No 8  
>>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A* (A:1-272,A:463-500)
Probab=30.77  E-value=36  Score=14.88  Aligned_cols=54  Identities=6%  Similarity=0.024  Sum_probs=41.8

Q ss_pred             CCCEEEEEEECCCCCEEEEEECCCCEECHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf             983289998189884799998039834899999998872654279853678899
Q gi|254780961|r   54 EEVRTLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSIDMDPQL  107 (200)
Q Consensus        54 ~~~R~L~l~n~~TgE~~~~~y~~~g~y~~~~l~~l~~~lRD~R~~~~~~mDp~l  107 (200)
                      +..+.+..+|+.|||.+..+.-....-+.++++...--++.|++-....-...|
T Consensus        34 ~~g~~~~v~~P~tge~i~~~~~a~~~~v~~ai~~A~~A~~~w~~~~~~~R~~iL   87 (310)
T 2j6l_A           34 GRGEVITTYCPANNEPIARVRQASVADYEETVKKAREAWKIWADIPAPKRGEIV   87 (310)
T ss_dssp             CCSCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             999979855799878889982899999999999999999988029999999999


No 9  
>>1oao_A CODH, carbon monoxide dehydrogenase beta subunit; electron transfer, oxidoreductase, acetyl-COA formation, WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica} (A:1-45,A:258-432)
Probab=29.88  E-value=37  Score=14.79  Aligned_cols=66  Identities=17%  Similarity=0.197  Sum_probs=41.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHH--HCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCC---------
Q ss_conf             98536788999999999998--0998878995136885676898621788876673111289989828999---------
Q gi|254780961|r   98 KQSIDMDPQLFDFLWEIQQY--FSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVS---------  166 (200)
Q Consensus        98 ~~~~~mDp~lld~L~~i~~~--~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~---------  166 (200)
                      |.-...||..+++|...++.  +|...|..|.-|                      -+.+..+-|.+.|.+         
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~g~P~~teV~lG----------------------vid~d~vnIlV~GH~p~l~~~i~~   81 (220)
T 1oao_A           24 NRDRTVDPAVLEMLVKSKDDKVTPQPVVSEANMG----------------------VLDPDQVNFVLHGHNPLLSEIIVQ   81 (220)
T ss_dssp             CSCCBCCHHHHHHHHHHHHHTCCCCCEEEEESGG----------------------GCCTTSEEEEEESSCHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCC----------------------CCCCCCCEEEEECCCCHHHHHHHH
T ss_conf             2356899899999999998099998727704775----------------------236898669998998437899999


Q ss_pred             -HHHHHHHHHHCCCCEEEEE
Q ss_conf             -9999999996399847873
Q gi|254780961|r  167 -LRSLYKIAIRLKRGGVGYY  185 (200)
Q Consensus       167 -~~~l~~~a~~~~~gGvG~Y  185 (200)
                       ++++...|++.+..||-+|
T Consensus        82 ~l~el~~lakqagakGI~V~  101 (220)
T 1oao_A           82 AAREMEGEAKAAGAKGINLV  101 (220)
T ss_dssp             HHHHTHHHHHHTTCSCEEEE
T ss_pred             HHHHHHHHHHHCCCCCEEEE
T ss_conf             99999999997489954999


No 10 
>>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, protein structure initiative; 1.95A {Streptococcus pyogenes} (A:1-67,A:175-211)
Probab=29.48  E-value=12  Score=17.73  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHH-HHCCCCCEEEEECCCCHHHHH
Q ss_conf             899999999999-809988789951368856768
Q gi|254780961|r  105 PQLFDFLWEIQQ-YFSVPEYIYILSGYRTQETNK  137 (200)
Q Consensus       105 p~lld~L~~i~~-~~g~~~Pi~I~SGYRsp~~N~  137 (200)
                      .++...|.++.. .+|..+||+..||-+||-+-.
T Consensus         7 ~~la~~L~~~~avkfg~~~~FtLaSG~~SP~YvD   40 (104)
T 2aee_A            7 SQIATQLLDIKAVYLKPEDPFTWASGIKSPIYTD   40 (104)
T ss_dssp             HHHHHHHHHTTSEEECTTSCEECGGGCEESEEEC
T ss_pred             HHHHHHHHHCCCEEECCCCCEEECCCCCCHHHEE
T ss_conf             9999999977999968999989473477616614


No 11 
>>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, magnesium, pyrimidine biosynthesis; 2.40A {Streptococcus mutans} (A:1-99,A:184-243)
Probab=26.32  E-value=14  Score=17.33  Aligned_cols=36  Identities=17%  Similarity=0.210  Sum_probs=26.9

Q ss_pred             CCCHHHHHHHHHHHH-HHCCCCCEEEEECCCCHHHHH
Q ss_conf             678899999999999-809988789951368856768
Q gi|254780961|r  102 DMDPQLFDFLWEIQQ-YFSVPEYIYILSGYRTQETNK  137 (200)
Q Consensus       102 ~mDp~lld~L~~i~~-~~g~~~Pi~I~SGYRsp~~N~  137 (200)
                      .+..+++..|.++.. .+|..+||+..||-.||-+-.
T Consensus        36 ~~~~~ia~~Llei~Avkfg~~~pFtlaSG~kSPiY~D   72 (159)
T 3dez_A           36 TLAKDIARDLLDIKAVYLKPEEPFTWASGIKSPIYTD   72 (159)
T ss_dssp             HHHHHHHHHHHHHTSEEECTTSCEEC---CEESEEEC
T ss_pred             HHHHHHHHHHHHCCCEEECCCCCEEECCCCCCCHHEE
T ss_conf             9999999999867988948999848173477507500


No 12 
>>1gnt_A HCP, hybrid cluster protein; oxidoreductase, aerobic desulfovibrio vulgaris; HET: FSO; 1.25A {Desulfovibrio vulgaris} (A:235-364)
Probab=23.80  E-value=48  Score=14.12  Aligned_cols=26  Identities=23%  Similarity=0.451  Sum_probs=18.9

Q ss_pred             EECCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             98289999999999996399847873
Q gi|254780961|r  160 FYIPGVSLRSLYKIAIRLKRGGVGYY  185 (200)
Q Consensus       160 i~i~g~~~~~l~~~a~~~~~gGvG~Y  185 (200)
                      |.|+|.++..|.+..++....||-+|
T Consensus         5 ILVSGHDL~dL~~LL~Qteg~GI~VY   30 (130)
T 1gnt_A            5 ILISGHDLKDMAELLKQTEGTGVDVY   30 (130)
T ss_dssp             EEEESSCHHHHHHHHHHHTTTTCEEE
T ss_pred             EEEECCCHHHHHHHHHHCCCCCEEEE
T ss_conf             99857637899999986258855777


No 13 
>>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3} (A:)
Probab=23.71  E-value=49  Score=14.10  Aligned_cols=73  Identities=16%  Similarity=0.157  Sum_probs=51.6

Q ss_pred             CCCCCCCCHHH-----HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf             79853678899-----9999999998099887899513688567689862178887667311128998982899999999
Q gi|254780961|r   97 SKQSIDMDPQL-----FDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLY  171 (200)
Q Consensus        97 ~~~~~~mDp~l-----ld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~G~Ak~S~H~~G~A~Di~i~g~~~~~l~  171 (200)
                      .-++.-+|-.+     ++++..+++.... -|+.|.|+|..+.+=...             +.--|.|+...+.+..+|.
T Consensus        50 ~~dlillD~~lP~~~G~~~~~~ir~~~~~-~~iivlt~~~~~~~~~~a-------------~~~Ga~~yl~Kp~~~~~l~  115 (154)
T 2qsj_A           50 TVDLILLDVNLPDAEAIDGLVRLKRFDPS-NAVALISGETDHELIRAA-------------LEAGADGFIPKSADPQVLI  115 (154)
T ss_dssp             CCSEEEECC------CHHHHHHHHHHCTT-SEEEEC-----CHHHHHH-------------HHTTCCBBCCTTSCHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-CCEEEEEEECCHHHHHHH-------------HHCCCCEEEECCCCHHHHH
T ss_conf             99699993788999868999999986899-939999845879999999-------------9869978997999999999


Q ss_pred             HHHHHCCCCEEE
Q ss_conf             999963998478
Q gi|254780961|r  172 KIAIRLKRGGVG  183 (200)
Q Consensus       172 ~~a~~~~~gGvG  183 (200)
                      ++....-.|..-
T Consensus       116 ~~i~~~~~g~~~  127 (154)
T 2qsj_A          116 HAVSLILEGEIF  127 (154)
T ss_dssp             HHHHHHHTTCCB
T ss_pred             HHHHHHHCCCCC
T ss_conf             999999879985


No 14 
>>3kuu_A Phosphoribosylaminoimidazole carboxylase catalytic subunit PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structural genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* (A:)
Probab=23.62  E-value=49  Score=14.09  Aligned_cols=55  Identities=16%  Similarity=0.177  Sum_probs=38.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCC--------CCCCCCCCCEEE
Q ss_conf             6788999999999998099887899513688567689862178--------887667311128
Q gi|254780961|r  102 DMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNR--------KIARKSQHVLGK  156 (200)
Q Consensus       102 ~mDp~lld~L~~i~~~~g~~~Pi~I~SGYRsp~~N~~lr~~~~--------G~Ak~S~H~~G~  156 (200)
                      .-|...++-...+-+.||..-.++|.|..|+|+.=....+...        .+|-.|-|+-|.
T Consensus        22 ~SD~~~~~~a~~~L~~~gi~~e~~V~SaHR~p~~l~~~~~~~~~~~~~viIa~AG~aa~Lpgv   84 (174)
T 3kuu_A           22 KSDWATXQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGX   84 (174)
T ss_dssp             GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHH
T ss_conf             745999999999999849956999997770817888889999864983999814775445016


No 15 
>>2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; hydrolasep-type ATPase, cryo-EM, helical reconstruction, membrane protein; 17.50A {Oryctolagus cuniculus} (D:)
Probab=23.15  E-value=46  Score=14.22  Aligned_cols=19  Identities=26%  Similarity=0.368  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q ss_conf             8999999998531122211
Q gi|254780961|r    9 ILKVIWIGLYVSVASFFVT   27 (200)
Q Consensus         9 ~~~~~~~g~~~~~a~~~~~   27 (200)
                      ++|++.+|.+.+.++.-.+
T Consensus         3 FfRY~aiG~YVG~aTVgaa   21 (26)
T 2voy_D            3 FFRYMAIGGYVGAATVGAA   21 (26)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEEEEEEEEECHH
T ss_conf             6665854268743452024


No 16 
>>1gnl_A HCP, hybrid cluster protein; anaerobic desulfovibrio desulfuricans, iron anomalous; HET: FSO; 1.25A {Desulfovibrio desulfuricans} (A:231-357)
Probab=22.72  E-value=51  Score=13.99  Aligned_cols=26  Identities=31%  Similarity=0.452  Sum_probs=18.0

Q ss_pred             EECCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             98289999999999996399847873
Q gi|254780961|r  160 FYIPGVSLRSLYKIAIRLKRGGVGYY  185 (200)
Q Consensus       160 i~i~g~~~~~l~~~a~~~~~gGvG~Y  185 (200)
                      |.|+|.++..|.+..++....||-+|
T Consensus         5 ILVSGHDL~dL~~LL~Qteg~Gi~VY   30 (127)
T 1gnl_A            5 ILISGHDLRDLEMLLKQTEGTGVDVY   30 (127)
T ss_dssp             EEEESSCHHHHHHHHHHHTTTTCEEE
T ss_pred             EEEECCCHHHHHHHHHHHCCCCEEEE
T ss_conf             99857637889999987148865777


No 17 
>>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* (A:159-262)
Probab=21.60  E-value=38  Score=14.73  Aligned_cols=26  Identities=12%  Similarity=0.106  Sum_probs=17.6

Q ss_pred             CCCEECHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             3983489999999887265427985367
Q gi|254780961|r   76 RGSQYNQEGLSQLNRLLYDWHSKQSIDM  103 (200)
Q Consensus        76 ~~g~y~~~~l~~l~~~lRD~R~~~~~~m  103 (200)
                      .+|..+-+  ....+||+|||.++...+
T Consensus        60 kgg~~D~~--~aa~~il~d~r~Gklg~~   85 (104)
T 3cnl_A           60 KGGVPDIE--RALMLFFTEVAQGKAGRV   85 (104)
T ss_dssp             GGGCBCHH--HHHHHHHHHHHTTTTCSC
T ss_pred             CCCCCCHH--HHHHHHHHHHHCCCCCEE
T ss_conf             19972799--999999999975998755


No 18 
>>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae} (A:1-273,A:463-497)
Probab=21.41  E-value=54  Score=13.82  Aligned_cols=50  Identities=10%  Similarity=0.161  Sum_probs=41.2

Q ss_pred             CCCCEEEEEEECCCCCEEEEEECCCCEECHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             89832899981898847999980398348999999988726542798536
Q gi|254780961|r   53 QEEVRTLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSID  102 (200)
Q Consensus        53 ~~~~R~L~l~n~~TgE~~~~~y~~~g~y~~~~l~~l~~~lRD~R~~~~~~  102 (200)
                      ..+.+.+..+|+.|||-+-.+...+.+-+.+++.....-++.|+.-....
T Consensus        37 ~~~~~~~~v~nP~tge~i~~~~~~~~~~v~~Ai~aA~~A~~~W~~~~~~~   86 (308)
T 3i44_A           37 PSTPHDLYVIDPSTEEACAVISLGSTRDADKAINAAKKAFQTWKTTSPHE   86 (308)
T ss_dssp             CSSCCEEEEEETTTTEEEEEEECCCHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             CCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             99999898767998787789808999999999999999999870199999


No 19 
>>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid; 2.70A {Burkholderia pseudomallei 1710B} PDB: 3ifh_Q (A:1-260,A:460-484)
Probab=21.00  E-value=55  Score=13.77  Aligned_cols=49  Identities=14%  Similarity=0.227  Sum_probs=39.4

Q ss_pred             CCCEEEEEEECCCCCEEEEEECCCCEECHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             9832899981898847999980398348999999988726542798536
Q gi|254780961|r   54 EEVRTLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSID  102 (200)
Q Consensus        54 ~~~R~L~l~n~~TgE~~~~~y~~~g~y~~~~l~~l~~~lRD~R~~~~~~  102 (200)
                      ...+++..+|+.|||.+-.+-..+.+.+.+++...-.-++.|++.....
T Consensus        25 ~~~~~~~v~nP~~ge~i~~v~~~~~~di~~Ai~aA~~A~~~W~~~~~~~   73 (285)
T 3ifg_A           25 DSDATFEVFDPATGESLGTVPKMGAAETARAIEAAQAAWAGWRMKTAKE   73 (285)
T ss_dssp             TTCCEEEEECTTTCCEEEEEECBCHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             CCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             9999898467999889999829999999999999999999870099999


Done!