RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780961|ref|YP_003065374.1| hypothetical protein
CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62]
(200 letters)
>gnl|CDD|114660 pfam05951, Peptidase_M15_2, Bacterial protein of unknown function
(DUF882). This family consists of a series of
hypothetical bacterial proteins of unknown function.
Length = 153
Score = 176 bits (449), Expect = 3e-45
Identities = 73/149 (48%), Positives = 102/149 (68%), Gaps = 4/149 (2%)
Query: 55 EVRTLKIYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSIDMDPQLFDFLWEI 114
E R+LK+Y + TG KA + +KR +Y EGL +L++LL DW + MDP+LFD LW+I
Sbjct: 5 EPRSLKLYNLHTGEKAEIVYKRNGRYLPEGLKKLDKLLRDWRRNEPHRMDPRLFDLLWQI 64
Query: 115 QQYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFYIPGVSLRSLYKIA 174
+ +YI ++SGYR+ TN ML R++ +A+KS H+LGKA+DF IPGV L+ L A
Sbjct: 65 YRSLGSRDYIQVVSGYRSPATNAMLRSRSKGVAKKSYHMLGKAMDFRIPGVPLKKLRDAA 124
Query: 175 IRLKRGGVGYY----SKFLHIDVGRVRSW 199
++L+ GGVGYY S F+H+DVG VR W
Sbjct: 125 LKLQVGGVGYYPTSGSPFVHMDVGPVRHW 153
>gnl|CDD|116875 pfam08291, Peptidase_M15_3, Peptidase M15.
Length = 110
Score = 53.1 bits (128), Expect = 4e-08
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 124 IYILSGYRTQETNKMLSRRNRKI--ARKSQHVLGKAVDFYIPGVSLRSLYKIAIRLKRGG 181
I I SGYR+ N R + AR SQH+ G A D + G + L +IA G
Sbjct: 45 IVITSGYRSPVLN-------RAVGGARDSQHLTGLAADITVSGKNPEELAQIARAHGPFG 97
Query: 182 VGYY--SKFLHID 192
+G + F+H+D
Sbjct: 98 IGIGGHNSFVHVD 110
>gnl|CDD|182081 PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific
transporter subunits IIBC; Provisional.
Length = 472
Score = 27.5 bits (61), Expect = 2.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 151 QHVLGKAVDFYIPGVSLRSLYKIAIRLKR 179
Q L A + G+S +LY +AIRLKR
Sbjct: 359 QTALAAAASAIMAGISEPALYGVAIRLKR 387
>gnl|CDD|131930 TIGR02884, spore_pdaA, delta-lactam-biosynthetic de-N-acetylase.
Muramic delta-lactam is an unusual constituent of
peptidoglycan, found only in bacterial spores in the
peptidoglycan wall, or spore cortex. The proteins in
this family are PdaA (yfjS), a member of a larger
family of polysaccharide deacetylases, and are
specificially involved in delta-lactam biosynthesis.
PdaA acts immediately after CwlD, an
N-acetylmuramoyl-L-alanine amidase and performs a
de-N-acetylation. PdaA may also perform the following
transpeptidation for lactam ring formation, as
heterologous expression in E. coli of CwlD and PdaA
together is sufficient for delta-lactam production.
Length = 224
Score = 26.6 bits (59), Expect = 4.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 22 ASFFVTSPIYSLSPDLIK 39
A+FFVT PDLIK
Sbjct: 66 AAFFVTGHYIKTQPDLIK 83
>gnl|CDD|180731 PRK06852, PRK06852, aldolase; Validated.
Length = 304
Score = 26.5 bits (59), Expect = 4.8
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 37 LIKYHQQSSMSSDLLDQEEVRTLK----IYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLL 92
L+K Q+ +S LLD E+V K + ++ G T GS+Y E LS+ +++
Sbjct: 105 LVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVG----YTIYLGSEYESEMLSEAAQII 160
Query: 93 YDWH 96
Y+ H
Sbjct: 161 YEAH 164
>gnl|CDD|148494 pfam06904, Extensin-like_C, Extensin-like protein C-terminus. This
family represents the C-terminus (approx. 120 residues)
of a number of bacterial extensin-like proteins.
Extensins are cell wall glycoproteins normally
associated with plants, where they strengthen the cell
wall in response to mechanical stress. Note that many
family members of this family are hypothetical.
Length = 178
Score = 26.1 bits (58), Expect = 6.3
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 10/38 (26%)
Query: 124 IYILSGY--RTQETNKMLSRRNRKIARKSQHVLGKAVD 159
I Y R R R AR S+H G A+D
Sbjct: 79 IEHAGSYACRN--------RNGRPGARLSEHARGNAID 108
>gnl|CDD|185556 PTZ00326, PTZ00326, phenylalanyl-tRNA synthetase alpha chain;
Provisional.
Length = 494
Score = 26.1 bits (58), Expect = 7.2
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 164 GVSLRSLYKIAIRLKRGGVGYYSKFLHIDVGRV 196
VS R LYK+A K+ G K+ ID RV
Sbjct: 336 AVSARMLYKLAQEYKKTGPFKPKKYFSID--RV 366
>gnl|CDD|148120 pfam06317, Arena_RNA_pol, Arenavirus RNA polymerase. This family
consists of several Arenavirus RNA polymerase proteins
(EC:2.7.7.48).
Length = 2206
Score = 25.7 bits (57), Expect = 8.3
Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 33/123 (26%)
Query: 19 VSVASFFVTSPIYSLSPDLIKYHQQSSMSS------------------DLLDQEEVRTLK 60
+A F T Y L P+ Y Q ++SS + LD+++
Sbjct: 847 SQLAERFKTKGKYKLDPEDYDYKIQKNLSSLVSGSKKSKSNREELSLYEELDEDQSDYFD 906
Query: 61 -----IYVVSTGSKAIVTFKRGSQYNQEGLSQLNRLLYDWHSKQSI----------DMDP 105
+ + + K G+ N + ++ L RL + I D DP
Sbjct: 907 EIKESVEKTLSKMRKSRKAKSGNLKNTKSINDLERLWAPKGVMRLIRSETSLHEVEDFDP 966
Query: 106 QLF 108
L
Sbjct: 967 DLL 969
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.137 0.403
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,223,096
Number of extensions: 193552
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 14
Length of query: 200
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 111
Effective length of database: 4,071,361
Effective search space: 451921071
Effective search space used: 451921071
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.0 bits)