RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780961|ref|YP_003065374.1| hypothetical protein
CLIBASIA_04310 [Candidatus Liberibacter asiaticus str. psy62]
         (200 letters)



>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear
           receptor; 1.80A {Streptomyces albus G} (A:91-213)
          Length = 123

 Score =  112 bits (281), Expect = 4e-26
 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 16/123 (13%)

Query: 88  LNRLLYDWH-----SKQSIDMDPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRR 142
           LNR   DW      +  +          L  ++      + I +  G+R+   N      
Sbjct: 1   LNRCNSDWSGGKVSAATARANALVTMWKLQAMRHAMGD-KPITVNGGFRSVTCNSN---- 55

Query: 143 NRKIARKSQHVLGKAVDFYIPGVSLRSLYKIAIRLK---RGGVGYY--SKFLHIDVGRVR 197
               A  S+H+ G A D         +L + A         G GY   +   H+  G  R
Sbjct: 56  -VGGASNSRHMYGHAADLGAGSQGFCALAQAARNHGFTEILGPGYPGHNDHTHVAGGDGR 114

Query: 198 SWT 200
            W+
Sbjct: 115 FWS 117


>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific;
           histone methyltransferase, nucleosome; HET: SAH; 2.20A
           {Saccharomyces cerevisiae} (A:71-174)
          Length = 104

 Score = 25.5 bits (56), Expect = 5.3
 Identities = 9/58 (15%), Positives = 20/58 (34%)

Query: 104 DPQLFDFLWEIQQYFSVPEYIYILSGYRTQETNKMLSRRNRKIARKSQHVLGKAVDFY 161
              +++ + EI +       +++ S Y  Q    +L   N             A++ Y
Sbjct: 39  STAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINLY 96


>2vo9_A The Enzymatically Active Domain of Endolysin {Listeria
           Monocytogenes Bacteriophage 500} (A:)
          Length = 179

 Score = 24.7 bits (53), Expect = 9.5
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 9/49 (18%)

Query: 124 IYILSGYRTQETNKML---------SRRNRKIARKSQHVLGKAVDFYIP 163
           + +  GYR+      L         +        +S H  G AVD  + 
Sbjct: 55  LCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCLY 103


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0451    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,521,961
Number of extensions: 63927
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 10
Length of query: 200
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 116
Effective length of database: 2,116,429
Effective search space: 245505764
Effective search space used: 245505764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.5 bits)