Query gi|254780962|ref|YP_003065375.1| hypothetical protein CLIBASIA_04315 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 49
No_of_seqs 2 out of 4
Neff 1.1
Searched_HMMs 33803
Date Wed Jun 1 19:52:42 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780962.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3fss_A Histone chaperone RTT1 30.5 14 0.00041 19.2 0.2 10 21-30 33-42 (48)
2 >1yqe_A Hypothetical UPF0204 p 24.9 19 0.00056 18.5 0.1 16 2-17 49-64 (97)
3 >1kcf_A Hypothetical 30.2 KD p 18.9 68 0.002 15.7 2.0 33 8-40 111-143 (258)
4 >2nzw_A Alpha1,3-fucosyltransf 15.7 35 0.001 17.2 -0.1 34 4-37 41-75 (105)
5 >1k87_A PUTA, proline dehydrog 14.1 58 0.0017 16.0 0.7 19 15-33 33-51 (103)
6 >2e5a_A Lipoyltransferase 1; l 12.4 79 0.0023 15.4 0.9 21 1-21 28-48 (73)
7 >2zxd_A Alpha-L-fucosidase, pu 9.6 1.2E+02 0.0035 14.5 1.0 19 3-21 114-133 (354)
8 >1r1h_A Neprilysin; enkephalin 9.4 1.3E+02 0.0038 14.3 1.2 20 29-48 49-68 (69)
9 >3e2q_A Proline oxidase, proli 9.2 79 0.0023 15.4 0.0 19 15-33 51-69 (74)
10 >3gza_A Putative alpha-L-fucos 8.9 1.4E+02 0.0043 14.0 1.3 19 2-20 67-86 (345)
No 1
>>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3gyp_A 3gyo_A (A:144-191)
Probab=30.54 E-value=14 Score=19.25 Aligned_cols=10 Identities=60% Similarity=1.042 Sum_probs=7.6
Q ss_pred HHCCCCCCHH
Q ss_conf 2225447401
Q gi|254780962|r 21 KHLGFKKPIF 30 (49)
Q Consensus 21 khlgfkkpif 30 (49)
--.||||||.
T Consensus 33 IlfGFKKPiL 42 (48)
T 3fss_A 33 IIFGFKKPIL 42 (48)
T ss_dssp EEEESSSSCE
T ss_pred EEEECCCCEE
T ss_conf 8973489749
No 2
>>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} (A:186-282)
Probab=24.85 E-value=19 Score=18.54 Aligned_cols=16 Identities=56% Similarity=0.796 Sum_probs=13.7
Q ss_pred CCCCCCCEEEEEECCC
Q ss_conf 6036785099995144
Q gi|254780962|r 2 AIKNSGAEFVLIDAKS 17 (49)
Q Consensus 2 aiknsgaefvlidak~ 17 (49)
|+..|+++|++||-|+
T Consensus 49 a~e~s~~~~a~iD~Ks 64 (97)
T 1yqe_A 49 AVKLSEAEYIIIDEKS 64 (97)
T ss_dssp HHHHHTCSEEEECTTT
T ss_pred HHHHCCCCEEEEECCC
T ss_conf 9871788689997677
No 3
>>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} (A:)
Probab=18.88 E-value=68 Score=15.70 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=17.8
Q ss_pred CEEEEEECCCCCHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 509999514441222254474012455887754
Q gi|254780962|r 8 AEFVLIDAKSDGYKHLGFKKPIFKNNIMENMIG 40 (49)
Q Consensus 8 aefvlidak~d~~khlgfkkpifknnimenmig 40 (49)
+.+|||....---..-.........||+|+|+-
T Consensus 111 pd~vlIErQr~Rs~~sav~e~~Lrv~ilE~mLy 143 (258)
T 1kcf_A 111 PHVILMERQRYRSGIATIPEWTLRVNMLESMLY 143 (258)
T ss_dssp CSEEEEEECCCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 998997646665676503466788999999999
No 4
>>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} (A:1-18,A:124-150,A:312-371)
Probab=15.70 E-value=35 Score=17.17 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=23.8
Q ss_pred CCCCCEEEEEECCCCCHHHCCCCCCH-HHHHHHHH
Q ss_conf 36785099995144412222544740-12455887
Q gi|254780962|r 4 KNSGAEFVLIDAKSDGYKHLGFKKPI-FKNNIMEN 37 (49)
Q Consensus 4 knsgaefvlidak~d~~khlgfkkpi-fknnimen 37 (49)
|...-..-.||.|.-.|..|.|||-. |-.+|.||
T Consensus 41 kdnslplnt~dgka~fyqdlsfkkildffktilen 75 (105)
T 2nzw_A 41 KDNSLPLNTLDGKAYFYQNLSFKKILAFFKTILEN 75 (105)
T ss_dssp CTTSGSSCEETTEECCGGGCCHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 54401435533320233313488898998765516
No 5
>>1k87_A PUTA, proline dehydrogenase, proline; multi-functional protein, transcriptional repressor, shuttling, dimer, oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli} (A:158-260)
Probab=14.11 E-value=58 Score=16.04 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=15.6
Q ss_pred CCCCCHHHCCCCCCHHHHH
Q ss_conf 1444122225447401245
Q gi|254780962|r 15 AKSDGYKHLGFKKPIFKNN 33 (49)
Q Consensus 15 ak~d~~khlgfkkpifknn 33 (49)
+..||.+|+|-.++.|-|-
T Consensus 33 ~~~dW~~H~g~s~s~~VNa 51 (103)
T 1k87_A 33 SNGNWQSHIGRSPSLFVNA 51 (103)
T ss_dssp TTTC------CCCTTTTST
T ss_pred CCCCHHHHCCCCCCHHHHH
T ss_conf 4688466258994055789
No 6
>>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} (A:247-319)
Probab=12.36 E-value=79 Score=15.36 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.2
Q ss_pred CCCCCCCCEEEEEECCCCCHH
Q ss_conf 960367850999951444122
Q gi|254780962|r 1 MAIKNSGAEFVLIDAKSDGYK 21 (49)
Q Consensus 1 maiknsgaefvlidak~d~~k 21 (49)
|.|||.--|-.-||+-.+|--
T Consensus 28 mdiKnG~IE~C~ie~P~~WLp 48 (73)
T 2e5a_A 28 IDVKNGRIEVCNIEAPDHWLP 48 (73)
T ss_dssp EEEETTEEEEEEEECCTTTSC
T ss_pred EEECCCEEEEEEEEEECCCCC
T ss_conf 998399999999996043356
No 7
>>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* (A:1-354)
Probab=9.63 E-value=1.2e+02 Score=14.50 Aligned_cols=19 Identities=37% Similarity=0.740 Sum_probs=15.1
Q ss_pred CCCCCCEEEEEECCC-CCHH
Q ss_conf 036785099995144-4122
Q gi|254780962|r 3 IKNSGAEFVLIDAKS-DGYK 21 (49)
Q Consensus 3 iknsgaefvlidak~-d~~k 21 (49)
.|..|+++|++++|| |++-
T Consensus 114 ~k~aG~~~vvl~~~h~~g~~ 133 (354)
T 2zxd_A 114 FKKAGAKYVIPTTKHHDGFC 133 (354)
T ss_dssp HHHTTCSEEEEEEECTTCCB
T ss_pred HHHCCCCEEEEEEEECCCCC
T ss_conf 99849976997677337742
No 8
>>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease, hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} (A:53-91,A:350-379)
Probab=9.40 E-value=1.3e+02 Score=14.30 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 01245588775433433403
Q gi|254780962|r 29 IFKNNIMENMIGRMSLRREY 48 (49)
Q Consensus 29 ifknnimenmig~mslrrey 48 (49)
-+-|+-|||-+|++-.++.+
T Consensus 49 ~~v~~nm~~avg~lyv~~~f 68 (69)
T 1r1h_A 49 NYVNGNMENAVGRLYVEAAF 68 (69)
T ss_dssp HHHHHHSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 99987789899999999866
No 9
>>3e2q_A Proline oxidase, proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, DNA-binding, FAD, flavoprotein, multifunctional enzyme, NAD; HET: FAD 1PE; 1.75A {Escherichia coli} PDB: 3e2r_A* 3e2s_A* 1tj2_A* 1tiw_A* 1tj0_A* 1tj1_A* 2fzm_A* 2fzn_A* 3itg_A* (A:55-128)
Probab=9.20 E-value=79 Score=15.38 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=15.5
Q ss_pred CCCCCHHHCCCCCCHHHHH
Q ss_conf 1444122225447401245
Q gi|254780962|r 15 AKSDGYKHLGFKKPIFKNN 33 (49)
Q Consensus 15 ak~d~~khlgfkkpifknn 33 (49)
+..||.+|+|-..+.|-|-
T Consensus 51 ~~~~W~~H~g~s~s~~VNA 69 (74)
T 3e2q_A 51 SNGNWQSHIGRSPSLFVNA 69 (74)
T ss_dssp -------------------
T ss_pred CCCCHHHHCCCCCHHHHHH
T ss_conf 4688465258981188889
No 10
>>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482} (A:1-345)
Probab=8.94 E-value=1.4e+02 Score=14.02 Aligned_cols=19 Identities=32% Similarity=0.695 Sum_probs=15.4
Q ss_pred CCCCCCCEEEEEECCC-CCH
Q ss_conf 6036785099995144-412
Q gi|254780962|r 2 AIKNSGAEFVLIDAKS-DGY 20 (49)
Q Consensus 2 aiknsgaefvlidak~-d~~ 20 (49)
..|.+|+.+|.+.+|| ||+
T Consensus 67 ~~k~aG~~~vvl~~khh~G~ 86 (345)
T 3gza_A 67 AAKAAGCKFAVLTATHETGF 86 (345)
T ss_dssp HHHTTTCSEEEEESCCSSCC
T ss_pred HHHHCCCCEEEECCCCCCCC
T ss_conf 99985997899702006875
Done!