Query gi|254780962|ref|YP_003065375.1| hypothetical protein CLIBASIA_04315 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 49
No_of_seqs 2 out of 4
Neff 1.1
Searched_HMMs 13730
Date Wed Jun 1 10:52:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780962.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zx3a1 a.43.1.6 (A:10-95) Hyp 17.3 6 0.00043 19.1 -1.7 15 26-40 5-19 (86)
2 d2j8ga2 c.1.8.8 (A:2-190) N-te 12.9 30 0.0022 15.5 0.9 31 2-36 21-51 (189)
3 d1hl9a2 c.1.8.11 (A:7-356) Put 12.9 31 0.0023 15.4 1.0 16 2-17 107-122 (350)
4 d1tj1a1 a.176.1.1 (A:89-261) N 12.0 22 0.0016 16.2 0.0 18 16-33 103-120 (173)
5 d1jfxa_ c.1.8.8 (A:) Streptomy 7.0 84 0.0061 13.2 1.3 30 3-36 22-51 (217)
6 d1izca_ c.1.12.5 (A:) Macropho 6.6 82 0.006 13.3 1.1 16 3-18 58-73 (299)
7 d1ixsb1 a.4.5.11 (B:243-318) H 6.1 62 0.0045 13.9 0.3 13 17-29 64-76 (76)
8 d1dxea_ c.1.12.5 (A:) 2-dehydr 5.7 1.1E+02 0.0079 12.7 1.8 17 3-19 33-49 (253)
9 d1y9ka1 d.108.1.1 (A:1-152) IA 5.6 1E+02 0.0073 12.8 1.1 24 4-27 89-118 (152)
10 d1c4ka1 c.23.1.4 (A:1-107) Orn 3.9 1.1E+02 0.0083 12.5 0.4 23 9-31 35-60 (107)
No 1
>d1zx3a1 a.43.1.6 (A:10-95) Hypothetical protein NE0241 {Nitrosomonas europaea [TaxId: 915]}
Probab=17.30 E-value=6 Score=19.10 Aligned_cols=15 Identities=53% Similarity=0.596 Sum_probs=9.8
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 474012455887754
Q gi|254780962|r 26 KKPIFKNNIMENMIG 40 (49)
Q Consensus 26 kkpifknnimenmig 40 (49)
..|.-||-|||||-.
T Consensus 5 pdpmrknwimenmds 19 (86)
T d1zx3a1 5 PDPMRKNWIMENMDS 19 (86)
T ss_dssp CCCSCCCCCCCSCCH
T ss_pred CCHHHHHHHHHCCCC
T ss_conf 970677478860554
No 2
>d2j8ga2 c.1.8.8 (A:2-190) N-terminal domain of endolysin {Bacteriophage cp-1 [TaxId: 10747]}
Probab=12.91 E-value=30 Score=15.52 Aligned_cols=31 Identities=10% Similarity=0.292 Sum_probs=23.4
Q ss_pred CCCCCCCEEEEEECCCCCHHHCCCCCCHHHHHHHH
Q ss_conf 60367850999951444122225447401245588
Q gi|254780962|r 2 AIKNSGAEFVLIDAKSDGYKHLGFKKPIFKNNIME 36 (49)
Q Consensus 2 aiknsgaefvlidak~d~~khlgfkkpifknnime 36 (49)
++|++|..||.|-|-.. -++.-|-|..|+-.
T Consensus 21 ~~k~~G~~f~iiKateG----~~y~D~~~~~~~~~ 51 (189)
T d2j8ga2 21 ILEQMGTTNTIIKISES----TTYLNPCLSAQVEQ 51 (189)
T ss_dssp HHHHHTCCEEEEEEEET----TTEECTTHHHHHHT
T ss_pred HHHHCCCCEEEEEEECC----CCCCCHHHHHHHHH
T ss_conf 99987993999999159----98268889999999
No 3
>d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic domain {Thermotoga maritima [TaxId: 2336]}
Probab=12.86 E-value=31 Score=15.43 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=13.5
Q ss_pred CCCCCCCEEEEEECCC
Q ss_conf 6036785099995144
Q gi|254780962|r 2 AIKNSGAEFVLIDAKS 17 (49)
Q Consensus 2 aiknsgaefvlidak~ 17 (49)
+.|.+||.++.+-|||
T Consensus 107 ~ak~aGaky~vlTaKH 122 (350)
T d1hl9a2 107 LFKKAGAKYVIPTTKH 122 (350)
T ss_dssp HHHHTTCSEEEEEEEC
T ss_pred HHHHCCCCEEEEEEEE
T ss_conf 9998699779988883
No 4
>d1tj1a1 a.176.1.1 (A:89-261) N-terminal domain of bifunctional PutA protein {Escherichia coli [TaxId: 562]}
Probab=11.95 E-value=22 Score=16.17 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.5
Q ss_pred CCCCHHHCCCCCCHHHHH
Q ss_conf 444122225447401245
Q gi|254780962|r 16 KSDGYKHLGFKKPIFKNN 33 (49)
Q Consensus 16 k~d~~khlgfkkpifknn 33 (49)
..||.+|+|-.++.|-|-
T Consensus 103 ~~dW~~H~g~s~S~~VNa 120 (173)
T d1tj1a1 103 NGNWQSHIGRSPSLFVNA 120 (173)
T ss_dssp ------------------
T ss_pred CCCHHHCCCCCHHHHHHH
T ss_conf 578332369970298999
No 5
>d1jfxa_ c.1.8.8 (A:) Streptomyces lysozyme {Streptomyces coelicolor, "mueller" dsm3030 [TaxId: 1902]}
Probab=6.98 E-value=84 Score=13.24 Aligned_cols=30 Identities=30% Similarity=0.560 Sum_probs=21.2
Q ss_pred CCCCCCEEEEEECCCCCHHHCCCCCCHHHHHHHH
Q ss_conf 0367850999951444122225447401245588
Q gi|254780962|r 3 IKNSGAEFVLIDAKSDGYKHLGFKKPIFKNNIME 36 (49)
Q Consensus 3 iknsgaefvlidak~d~~khlgfkkpifknnime 36 (49)
+|++|..||.|-+-. + -++.-|-|..|+-+
T Consensus 22 vk~~gi~fviikat~-G---~~~~D~~~~~n~~~ 51 (217)
T d1jfxa_ 22 VKSAGMSFAYIKATE-G---TNYKDDRFSANYTN 51 (217)
T ss_dssp HHHTTCCEEEEEEEE-T---TTEECTTHHHHHHH
T ss_pred HHHCCCCEEEEEEEC-C---CCCCCHHHHHHHHH
T ss_conf 987799299999814-9---88658389998999
No 6
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}
Probab=6.59 E-value=82 Score=13.29 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=12.8
Q ss_pred CCCCCCEEEEEECCCC
Q ss_conf 0367850999951444
Q gi|254780962|r 3 IKNSGAEFVLIDAKSD 18 (49)
Q Consensus 3 iknsgaefvlidak~d 18 (49)
+-.+|..||+||..|-
T Consensus 58 ~a~~g~D~v~iD~EHg 73 (299)
T d1izca_ 58 LAATKPDFVWIDVEHG 73 (299)
T ss_dssp HHHTCCSEEEEETTTS
T ss_pred HHCCCCCEEEECCCCC
T ss_conf 9749989999857889
No 7
>d1ixsb1 a.4.5.11 (B:243-318) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=6.10 E-value=62 Score=13.89 Aligned_cols=13 Identities=38% Similarity=0.984 Sum_probs=9.2
Q ss_pred CCCHHHCCCCCCH
Q ss_conf 4412222544740
Q gi|254780962|r 17 SDGYKHLGFKKPI 29 (49)
Q Consensus 17 ~d~~khlgfkkpi 29 (49)
.-+|+|||...|+
T Consensus 64 ~~a~~hLg~~~P~ 76 (76)
T d1ixsb1 64 ELAYRHLGYPPPV 76 (76)
T ss_dssp HHHHHHHTCCCCC
T ss_pred HHHHHHCCCCCCC
T ss_conf 9999981999999
No 8
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=5.70 E-value=1.1e+02 Score=12.66 Aligned_cols=17 Identities=12% Similarity=0.415 Sum_probs=13.1
Q ss_pred CCCCCCEEEEEECCCCC
Q ss_conf 03678509999514441
Q gi|254780962|r 3 IKNSGAEFVLIDAKSDG 19 (49)
Q Consensus 3 iknsgaefvlidak~d~ 19 (49)
+..+|-.||+||..|-.
T Consensus 33 ~a~~G~Dfv~iD~EHg~ 49 (253)
T d1dxea_ 33 LGLAGFDWLVLDGEHAP 49 (253)
T ss_dssp HTTSCCSEEEEESSSSS
T ss_pred HHCCCCCEEEEECCCCC
T ss_conf 97089899998236687
No 9
>d1y9ka1 d.108.1.1 (A:1-152) IAA acetyltransferase {Bacillus cereus [TaxId: 1396]}
Probab=5.56 E-value=1e+02 Score=12.83 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=15.0
Q ss_pred CCCCCEEEEEECCC------CCHHHCCCCC
Q ss_conf 36785099995144------4122225447
Q gi|254780962|r 4 KNSGAEFVLIDAKS------DGYKHLGFKK 27 (49)
Q Consensus 4 knsgaefvlidak~------d~~khlgfkk 27 (49)
+..|...+.+..-. ..|+.+||+.
T Consensus 89 ~~~g~~~i~l~t~~~n~~a~~fY~k~GF~~ 118 (152)
T d1y9ka1 89 KGYGMSKLEVGTGNSSVSQLALYQKCGFRI 118 (152)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHTTCEE
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHCCCEE
T ss_conf 986995689995468789999999889999
No 10
>d1c4ka1 c.23.1.4 (A:1-107) Ornithine decarboxylase N-terminal "wing" domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Probab=3.86 E-value=1.1e+02 Score=12.54 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=15.2
Q ss_pred EEEEEECCCC---CHHHCCCCCCHHH
Q ss_conf 0999951444---1222254474012
Q gi|254780962|r 9 EFVLIDAKSD---GYKHLGFKKPIFK 31 (49)
Q Consensus 9 efvlidak~d---~~khlgfkkpifk 31 (49)
--|+.|+.+. --+..||.-|+|-
T Consensus 35 AVVvsD~~~g~l~~i~~TgF~IPvFv 60 (107)
T d1c4ka1 35 AVIAMDYETDVIDAADATKFGIPVFA 60 (107)
T ss_dssp EEEEETTCHHHHHHHHTTCSCCCEEE
T ss_pred EEEEECCCCCHHHHHHHCCCCCCEEE
T ss_conf 99997140118999996288888899
Done!