RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780962|ref|YP_003065375.1| hypothetical protein CLIBASIA_04315 [Candidatus Liberibacter asiaticus str. psy62] (49 letters) >gnl|CDD|146850 pfam04414, tRNA_deacylase, D-aminoacyl-tRNA deacylase. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Length = 214 Score = 26.1 bits (58), Expect = 2.3 Identities = 9/17 (52%), Positives = 12/17 (70%) Query: 1 MAIKNSGAEFVLIDAKS 17 AI+ SGA+ +ID KS Sbjct: 175 QAIEKSGADAAIIDRKS 191 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.322 0.139 0.396 Gapped Lambda K H 0.267 0.0750 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 575,761 Number of extensions: 19508 Number of successful extensions: 42 Number of sequences better than 10.0: 1 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 2 Length of query: 49 Length of database: 6,263,737 Length adjustment: 22 Effective length of query: 27 Effective length of database: 5,788,339 Effective search space: 156285153 Effective search space used: 156285153 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.4 bits)