RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780962|ref|YP_003065375.1| hypothetical protein
CLIBASIA_04315 [Candidatus Liberibacter asiaticus str. psy62]
         (49 letters)



>gnl|CDD|146850 pfam04414, tRNA_deacylase, D-aminoacyl-tRNA deacylase.  Several
           aminoacyl-tRNA synthetases have the ability to transfer
           the D-isomer of their amino acid onto their cognate
           tRNA. D-aminoacyl-tRNA deacylases hydrolyse the ester
           bond between the polynucleotide and the D-amino acid,
           thereby preventing the accumulation of such mis-acylated
           and metabolically inactive tRNA molecules.
          Length = 214

 Score = 26.1 bits (58), Expect = 2.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 1   MAIKNSGAEFVLIDAKS 17
            AI+ SGA+  +ID KS
Sbjct: 175 QAIEKSGADAAIIDRKS 191


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0750    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 575,761
Number of extensions: 19508
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 2
Length of query: 49
Length of database: 6,263,737
Length adjustment: 22
Effective length of query: 27
Effective length of database: 5,788,339
Effective search space: 156285153
Effective search space used: 156285153
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)