RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780962|ref|YP_003065375.1| hypothetical protein
CLIBASIA_04315 [Candidatus Liberibacter asiaticus str. psy62]
         (49 letters)



>gnl|CDD|184868 PRK14866, PRK14866, hypothetical protein; Provisional.
          Length = 451

 Score = 27.7 bits (62), Expect = 0.80
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 1   MAIKNSGAEFVLIDAKS 17
            A + SGA+   ID K+
Sbjct: 231 AAFEASGADAAYIDRKA 247


>gnl|CDD|139206 PRK12759, PRK12759, bifunctional
           gluaredoxin/ribonucleoside-diphosphate reductase subunit
           beta; Provisional.
          Length = 410

 Score = 25.0 bits (54), Expect = 4.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 28  PIFKNNIMENMIGRMSLR 45
           P+FKNN + NM+G  + R
Sbjct: 171 PLFKNNEIRNMLGSFAAR 188


>gnl|CDD|162142 TIGR00975, 3a0107s03, phosphate ABC transporter, phosphate-binding
           protein.  This family represents one type of
           (periplasmic, in Gram-negative bacteria)
           phosphate-binding protein found in phosphate ABC
           (ATP-binding cassette) transporters. This protein is
           accompanied, generally in the same operon, by an ATP
           binding protein and (usually) two permease proteins.
          Length = 314

 Score = 24.7 bits (54), Expect = 4.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 2   AIKNSGAEFVLIDAKSDGYKHLGFKKPIFKN 32
           A+KNS  +FVL DA+S      G K    KN
Sbjct: 208 ALKNSAGKFVLPDAESIKAAAAGAKISTPKN 238


>gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.
          Length = 538

 Score = 24.3 bits (53), Expect = 6.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 25  FKKPIFKNNIMENMIGRMSLRRE 47
           F KP+ +  +M  ++ RM+L+ E
Sbjct: 327 FGKPLIEQPLMRQVLSRMALQLE 349


>gnl|CDD|129652 TIGR00561, pntA, NAD(P) transhydrogenase, alpha subunit.  In some
           species, such as Rhodospirillum rubrum, the alpha chain
           is replaced by two shorter chains, both with some
           homology to the full-length alpha chain modeled here.
           These score below the trusted cutoff.
          Length = 511

 Score = 24.5 bits (53), Expect = 7.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 3   IKNSGAEFVLIDAKSDGYKHLGFKK 27
           +++ GAEF+ +D K +G    G+ K
Sbjct: 203 VQSMGAEFLELDFKEEGGSGDGYAK 227


>gnl|CDD|185102 PRK15180, PRK15180, Vi polysaccharide biosynthesis protein TviD;
           Provisional.
          Length = 831

 Score = 24.3 bits (52), Expect = 7.9
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 7/55 (12%)

Query: 2   AIKNSGAEFVLIDAKSDGYKHLGFKKPIFKN-NIMENMIG------RMSLRREYG 49
           A++N   + VLI  +S  + HLG+ +  +++ + +E +IG      R  LR  +G
Sbjct: 315 ALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG 369


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 788,351
Number of extensions: 32176
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 8
Length of query: 49
Length of database: 5,994,473
Length adjustment: 22
Effective length of query: 27
Effective length of database: 5,519,097
Effective search space: 149015619
Effective search space used: 149015619
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.1 bits)