RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780962|ref|YP_003065375.1| hypothetical protein
CLIBASIA_04315 [Candidatus Liberibacter asiaticus str. psy62]
         (49 letters)



>d2j8ga2 c.1.8.8 (A:2-190) N-terminal domain of endolysin
          {Bacteriophage cp-1 [TaxId: 10747]}
          Length = 189

 Score = 22.8 bits (48), Expect = 7.8
 Identities = 4/33 (12%), Positives = 10/33 (30%), Gaps = 4/33 (12%)

Query: 2  AIKNSGAEFVLIDAKSDGYKHLGFKKPIFKNNI 34
           ++  G    +I   S+      +  P     +
Sbjct: 21 ILEQMGTTNTIIKI-SES---TTYLNPCLSAQV 49


>d1yqea1 c.56.7.1 (A:1-278) Hypothetical protein AF0625
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 278

 Score = 22.5 bits (48), Expect = 9.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 2   AIKNSGAEFVLIDAKS 17
           A+K S AE+++ID KS
Sbjct: 230 AVKLSEAEYIIIDEKS 245


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0518    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 181,787
Number of extensions: 5614
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 2
Length of query: 49
Length of database: 2,407,596
Length adjustment: 21
Effective length of query: 28
Effective length of database: 2,119,266
Effective search space: 59339448
Effective search space used: 59339448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)