BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780962|ref|YP_003065375.1| hypothetical protein
CLIBASIA_04315 [Candidatus Liberibacter asiaticus str. psy62]
         (49 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780962|ref|YP_003065375.1| hypothetical protein CLIBASIA_04315 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 49

 Score =  101 bits (251), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/49 (100%), Positives = 49/49 (100%)

Query: 1  MAIKNSGAEFVLIDAKSDGYKHLGFKKPIFKNNIMENMIGRMSLRREYG 49
          MAIKNSGAEFVLIDAKSDGYKHLGFKKPIFKNNIMENMIGRMSLRREYG
Sbjct: 1  MAIKNSGAEFVLIDAKSDGYKHLGFKKPIFKNNIMENMIGRMSLRREYG 49


>gi|254780989|ref|YP_003065402.1| GCN5-related N-acetyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 185

 Score = 80.9 bits (198), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 46/68 (67%), Gaps = 20/68 (29%)

Query: 1   MAIKNSGAEFVLIDAKSDGYKHLGFKKP--------------------IFKNNIMENMIG 40
           MAIKNSGAEFVLIDAK D +KHLGFKKP                    IFKNNIMENMIG
Sbjct: 117 MAIKNSGAEFVLIDAKHDWHKHLGFKKPHQHQIRYAHGGGAATDWLVHIFKNNIMENMIG 176

Query: 41  RMSLRREY 48
           +MSLRREY
Sbjct: 177 KMSLRREY 184


>gi|254780183|ref|YP_003064596.1| single-strand binding protein (ssb) [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 159

 Score = 20.8 bits (42), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 11  VLIDAKSDGYKHLGFKKPIFKNNIMENMIG-RMSLRRE 47
           V++D + D  +    +     NN+ EN++G R S  RE
Sbjct: 108 VMLDGRRDSLQGEEQRSEQHSNNLKENVVGNRYSSPRE 145


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1775

 Score = 20.0 bits (40), Expect = 8.2,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 25  FKKPIFKNNIMENMI 39
            K P F+NN+ +N I
Sbjct: 179 LKPPHFQNNLSDNQI 193


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.139    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,080
Number of Sequences: 1233
Number of extensions: 822
Number of successful extensions: 5
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 49
length of database: 328,796
effective HSP length: 22
effective length of query: 27
effective length of database: 301,670
effective search space:  8145090
effective search space used:  8145090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 31 (16.5 bits)