RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780963|ref|YP_003065376.1| hypothetical protein
CLIBASIA_04320 [Candidatus Liberibacter asiaticus str. psy62]
         (215 letters)



>gnl|CDD|163517 TIGR03805, beta_helix_1, parallel beta-helix repeat-containing
           protein.  Members of this protein family contain a
           tandem pair of beta-helix repeats (see TIGR03804). Each
           repeat is expected to consist of three beta strands that
           form a single turn as they form a right-handed helix of
           stacked beta-structure. Member proteinsa occur regularly
           in two-gene pairs along with another uncharacterized
           protein family; both protein families exhibit either
           lipoprotein or regular signal peptides, suggesting
           transit through the plasma membrane, and the two may be
           fused. The function of the pair is unknown.
          Length = 314

 Score = 25.8 bits (57), Expect = 8.3
 Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 9/42 (21%)

Query: 148 TPWLILQSDFAIRHASSDVVVCMRYQAKFLITDSIGILYRNV 189
           T   +  SD A+ +   D V          +  S GI+ R +
Sbjct: 61  TSDDVTLSDLAVENTKGDGVK---------VKGSDGIIIRRL 93


>gnl|CDD|161787 TIGR00243, Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase.
           1-deoxy-D-xylulose 5-phosphate is converted to
           2-C-methyl-D-erythritol 4-phosphate in the presence of
           NADPH. It is involved in the synthesis of isopentenyl
           diphosphate (IPP), a basic building block in isoprenoid,
           thiamin, and pyridoxal biosynthesis.
          Length = 389

 Score = 25.6 bits (56), Expect = 9.4
 Identities = 4/17 (23%), Positives = 9/17 (52%)

Query: 52  RTPLSLDLDYKHRVYLD 68
           R P++  + + +RV   
Sbjct: 268 RLPIAYAMAWPNRVNSG 284


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.326    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0834    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,602,894
Number of extensions: 225807
Number of successful extensions: 453
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 8
Length of query: 215
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 126
Effective length of database: 4,071,361
Effective search space: 512991486
Effective search space used: 512991486
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (24.8 bits)