RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780963|ref|YP_003065376.1| hypothetical protein
CLIBASIA_04320 [Candidatus Liberibacter asiaticus str. psy62]
         (215 letters)



>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport,
           respiratory chain, 4Fe- 4S, cell membrane, flavoprotein,
           FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8}
           PDB: 2fug_1* 3iam_1* 3ias_1* (1:1-237)
          Length = 237

 Score = 24.9 bits (54), Expect = 7.6
 Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 9/78 (11%)

Query: 116 KKIGVGVVASTGFNTGDKWLGAEMGMSFYVYPT-------PWLILQSDFAIRHASSDVVV 168
           K+ G+      GF TG KW           Y         P                +++
Sbjct: 58  KRSGLRGRGGAGFPTGLKWSFMPKDDGKQHYLICNADESEPGSFKDRYILEDVP--HLLI 115

Query: 169 CMRYQAKFLITDSIGILY 186
                A + I  ++G +Y
Sbjct: 116 EGMILAGYAIRATVGYIY 133


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.326    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,685,654
Number of extensions: 72834
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 130
Effective length of database: 2,082,624
Effective search space: 270741120
Effective search space used: 270741120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.6 bits)