RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780963|ref|YP_003065376.1| hypothetical protein CLIBASIA_04320 [Candidatus Liberibacter asiaticus str. psy62] (215 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 25.7 bits (56), Expect = 8.4 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 15/67 (22%) Query: 14 TF---IGEFSQALEHED------ELKVNF-G-LMRRVMIDLWSREISSYRTPLSLDLDYK 62 F + E ++ +D EL F G + V ++ + L+L L Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS----KVGQFDQVLNLCLTEF 91 Query: 63 HRVYLDT 69 YL+ Sbjct: 92 ENCYLEG 98 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.326 0.141 0.428 Gapped Lambda K H 0.267 0.0582 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,912,104 Number of extensions: 86088 Number of successful extensions: 184 Number of sequences better than 10.0: 1 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 2 Length of query: 215 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 127 Effective length of database: 3,559,758 Effective search space: 452089266 Effective search space used: 452089266 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 55 (25.3 bits)