RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780963|ref|YP_003065376.1| hypothetical protein
CLIBASIA_04320 [Candidatus Liberibacter asiaticus str. psy62]
         (215 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.7 bits (56), Expect = 8.4
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 15/67 (22%)

Query: 14 TF---IGEFSQALEHED------ELKVNF-G-LMRRVMIDLWSREISSYRTPLSLDLDYK 62
           F   + E ++    +D      EL   F G +   V       ++  +   L+L L   
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS----KVGQFDQVLNLCLTEF 91

Query: 63 HRVYLDT 69
             YL+ 
Sbjct: 92 ENCYLEG 98


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.326    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,912,104
Number of extensions: 86088
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 2
Length of query: 215
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 127
Effective length of database: 3,559,758
Effective search space: 452089266
Effective search space used: 452089266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.3 bits)