BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780963|ref|YP_003065376.1| hypothetical protein
CLIBASIA_04320 [Candidatus Liberibacter asiaticus str. psy62]
(215 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780963|ref|YP_003065376.1| hypothetical protein CLIBASIA_04320 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 215
Score = 443 bits (1140), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MVRVFCAIIFVLITFIGEFSQALEHEDELKVNFGLMRRVMIDLWSREISSYRTPLSLDLD 60
MVRVFCAIIFVLITFIGEFSQALEHEDELKVNFGLMRRVMIDLWSREISSYRTPLSLDLD
Sbjct: 1 MVRVFCAIIFVLITFIGEFSQALEHEDELKVNFGLMRRVMIDLWSREISSYRTPLSLDLD 60
Query: 61 YKHRVYLDTYKSFSINLGFETFNEIVNPTTMRVLVLPVLSMHKTWNNNFDDSYFFKKIGV 120
YKHRVYLDTYKSFSINLGFETFNEIVNPTTMRVLVLPVLSMHKTWNNNFDDSYFFKKIGV
Sbjct: 61 YKHRVYLDTYKSFSINLGFETFNEIVNPTTMRVLVLPVLSMHKTWNNNFDDSYFFKKIGV 120
Query: 121 GVVASTGFNTGDKWLGAEMGMSFYVYPTPWLILQSDFAIRHASSDVVVCMRYQAKFLITD 180
GVVASTGFNTGDKWLGAEMGMSFYVYPTPWLILQSDFAIRHASSDVVVCMRYQAKFLITD
Sbjct: 121 GVVASTGFNTGDKWLGAEMGMSFYVYPTPWLILQSDFAIRHASSDVVVCMRYQAKFLITD 180
Query: 181 SIGILYRNVSAVSAAVDKNIGLGVTKIGLDYVYKF 215
SIGILYRNVSAVSAAVDKNIGLGVTKIGLDYVYKF
Sbjct: 181 SIGILYRNVSAVSAAVDKNIGLGVTKIGLDYVYKF 215
>gi|254781154|ref|YP_003065567.1| hypothetical protein CLIBASIA_05305 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 65
Score = 36.6 bits (83), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 148 TPWLILQSDFAIRHASSDVVVCMRYQAKFLITDSIGILYRNVSAVSAAVDKNI----GLG 203
T WL LQ DF + R Q + LITD N+SA+ ++ DKNI G
Sbjct: 2 TSWLKLQRDFGVVLIGDKAFNTYRSQLRILITD-------NLSALISS-DKNITESGKEG 53
Query: 204 VTKIGLDYVYKF 215
+ K+ L YVY F
Sbjct: 54 IVKMDLSYVYTF 65
>gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate desuccinylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 389
Score = 23.1 bits (48), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 76 NLGFETFNEIVNPTTMRVLVLPV 98
N+GF+T N +PT M + + V
Sbjct: 221 NIGFDTGNTTFSPTNMEITTIDV 243
>gi|254780786|ref|YP_003065199.1| ribosome-binding factor A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 128
Score = 22.3 bits (46), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 150 WLILQSDFAIRHASSDVV----VCM 170
W+IL ++F R S DV+ VCM
Sbjct: 25 WVILNNEFQDRLISRDVISISEVCM 49
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.141 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,476
Number of Sequences: 1233
Number of extensions: 6045
Number of successful extensions: 23
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 7
length of query: 215
length of database: 328,796
effective HSP length: 70
effective length of query: 145
effective length of database: 242,486
effective search space: 35160470
effective search space used: 35160470
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 36 (18.5 bits)