Query         gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 352
No_of_seqs    132 out of 1350
Neff          7.5 
Searched_HMMs 39220
Date          Mon May 30 02:58:47 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780964.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK07209 ribonucleotide-diphos 100.0       0       0  754.3  35.3  349    4-352    43-391 (391)
  2 PRK12759 bifunctional gluaredo 100.0       0       0  644.9  29.9  308   30-352    94-405 (410)
  3 PTZ00211 ribonucleotide reduct 100.0       0       0  619.4  33.6  310   16-351     6-318 (330)
  4 COG0208 NrdF Ribonucleotide re 100.0       0       0  617.5  34.4  334    8-350     2-340 (348)
  5 PRK09101 nrdB ribonucleotide-d 100.0       0       0  614.4  34.0  335    9-348     4-362 (376)
  6 PRK09614 nrdF ribonucleotide-d 100.0       0       0  598.0  35.0  314   21-352     2-320 (325)
  7 PRK13966 nrdF2 ribonucleotide- 100.0       0       0  562.8  32.9  296   33-349    15-315 (324)
  8 PRK13965 ribonucleotide-diphos 100.0       0       0  548.0  32.4  299   33-352    28-332 (337)
  9 PRK13967 nrdF1 ribonucleotide- 100.0       0       0  542.5  32.3  299   33-352    13-317 (322)
 10 cd01049 RNRR2 Ribonucleotide R 100.0       0       0  536.5  33.7  284   32-327     1-287 (288)
 11 pfam00268 Ribonuc_red_sm Ribon 100.0       0       0  525.2  32.4  275   22-321     1-278 (281)
 12 KOG1567 consensus              100.0       0       0  499.4  21.3  310   15-349    18-330 (344)
 13 cd07911 RNRR2_Rv0233_like Ribo 100.0       0       0  384.9  28.4  253   43-311    10-268 (280)
 14 PRK08326 ribonucleotide-diphos 100.0       0       0  369.5  26.0  293   14-326     6-307 (318)
 15 cd01054 consensus               98.1  0.0011 2.9E-08   44.3  23.0  193   72-283    79-280 (296)
 16 pfam02332 Phenol_Hydrox Methan  98.1 0.00084 2.1E-08   45.2  16.0  160   73-250    66-232 (233)
 17 cd01057 AAMH_A Aromatic and Al  98.0  0.0017 4.4E-08   43.1  19.3  229   70-312    67-301 (465)
 18 pfam11583 AurF P-aminobenzoate  97.9  0.0025 6.3E-08   42.0  17.9  214   50-289    38-260 (295)
 19 pfam11266 DUF3066 Protein of u  97.9  0.0022 5.7E-08   42.3  14.9  202   75-311     4-207 (219)
 20 TIGR02029 AcsF magnesium-proto  96.6   0.007 1.8E-07   38.9   6.1   60  182-246    77-138 (344)
 21 cd00657 Ferritin_like Ferritin  96.0    0.13 3.3E-06   30.2  10.2  125   86-241     3-129 (130)
 22 cd01050 Acyl_ACP_Desat Acyl AC  96.0   0.078   2E-06   31.8   8.6  113  112-252    94-212 (297)
 23 PRK13778 paaA phenylacetate-Co  95.9    0.15 3.8E-06   29.8  16.0  224   74-332    36-286 (316)
 24 cd01058 AAMH_B Aromatic and Al  95.8    0.17 4.3E-06   29.4  21.0  215   44-281    64-288 (304)
 25 COG3396 Uncharacterized conser  95.7    0.18 4.6E-06   29.2  20.1  225   74-327    12-254 (265)
 26 cd07911 RNRR2_Rv0233_like Ribo  95.6   0.028 7.1E-07   34.8   5.2   61  255-315   209-269 (280)
 27 PRK13654 magnesium-protoporphy  95.5   0.045 1.2E-06   33.4   6.0  211   67-319    70-290 (351)
 28 cd01047 ACSF Aerobic Cyclase S  95.2   0.069 1.8E-06   32.1   6.2  209   73-319    55-272 (323)
 29 CHL00185 ycf59 magnesium-proto  95.0   0.091 2.3E-06   31.3   6.2  212   67-319    66-286 (349)
 30 pfam04305 DUF455 Protein of un  92.8    0.76 1.9E-05   24.9  10.9  102  118-249   102-209 (250)
 31 pfam03405 FA_desaturase_2 Fatt  85.9     2.6 6.5E-05   21.3   9.8  109  113-252   100-218 (330)
 32 cd07908 Mn_catalase_like Manga  82.1     3.7 9.3E-05   20.3  10.3  134   83-240    16-152 (154)
 33 cd01051 Mn_catalase Manganese   81.7     3.5   9E-05   20.4   4.9  129   83-244    23-154 (156)
 34 pfam05138 PaaA_PaaC Phenylacet  81.6     3.8 9.7E-05   20.2  22.0  193   84-311     5-210 (248)
 35 pfam02915 Rubrerythrin Rubrery  77.5     5.1 0.00013   19.3  11.0  133   85-241     2-136 (137)
 36 COG1633 Uncharacterized conser  74.3     6.1 0.00016   18.7  13.1  147   82-247    25-171 (176)
 37 TIGR00289 TIGR00289 conserved   73.8       3 7.7E-05   20.8   2.7   77  256-344    70-147 (227)
 38 pfam10118 Metal_hydrol Predict  73.5     6.4 0.00016   18.6  14.9  140   79-247    25-174 (251)
 39 pfam05067 Mn_catalase Manganes  70.4     7.5 0.00019   18.1   4.8   33  108-140    49-81  (272)
 40 COG2074 2-phosphoglycerate kin  51.5     5.7 0.00015   18.9   0.7  107  192-304   187-293 (299)
 41 TIGR00956 3a01205 Pleiotropic   51.2      16 0.00041   15.9   3.3  241   58-345   816-1111(1466)
 42 COG4902 Uncharacterized protei  48.2      18 0.00045   15.6   5.3   80  222-301    78-162 (189)
 43 pfam11251 DUF3050 Protein of u  47.9      18 0.00046   15.5   9.5  171   84-275    27-228 (232)
 44 TIGR02254 YjjG/YfnB HAD superf  47.8      18 0.00045   15.6   2.7   81  226-314    61-147 (233)
 45 COG3546 Mn-containing catalase  47.2      18 0.00047   15.5   3.4   31  110-140    51-81  (277)
 46 PTZ00301 uridine kinase; Provi  44.1      18 0.00046   15.5   2.3   95  194-301   110-208 (210)
 47 pfam09968 DUF2202 Uncharacteri  43.9      21 0.00052   15.1   7.4   81  221-301    28-113 (162)
 48 cd01055 Nonheme_Ferritin nonhe  42.2      22 0.00056   14.9   8.2   36  206-242    24-59  (156)
 49 COG2833 Uncharacterized protei  41.1      23 0.00058   14.8   7.4  106  120-249   115-220 (268)
 50 PRK08233 hypothetical protein;  36.8      26 0.00067   14.4   3.2   93  194-302    81-177 (182)
 51 cd01044 Ferritin_CCC1_N Ferrit  36.5      26 0.00068   14.4  11.1   40  102-141    18-57  (125)
 52 cd01045 Ferritin_like_AB Uncha  32.5      31 0.00078   13.9  12.5   38  102-139    18-55  (139)
 53 KOG1883 consensus               32.4      31 0.00078   13.9   9.4   94  116-242   853-950 (1517)
 54 TIGR00988 hip integration host  32.1      31 0.00079   13.9   4.0   33  239-271     4-36  (94)
 55 TIGR02773 addB_Gpos ATP-depend  31.1      32 0.00082   13.8   2.9  157  129-304   728-905 (1192)
 56 TIGR01502 B_methylAsp_ase meth  30.2      33 0.00085   13.7   2.1   55  257-315   177-237 (414)
 57 pfam08671 SinI Anti-repressor   29.2      24 0.00062   14.6   1.0   27  272-298     2-28  (30)
 58 pfam10603 consensus             28.1      36 0.00092   13.5   4.8   40  262-302     2-41  (55)
 59 TIGR02156 PA_CoA_Oxy1 phenylac  27.8      36 0.00093   13.4   5.7  227   65-332    13-275 (297)
 60 TIGR00601 rad23 UV excision re  27.5     8.2 0.00021   17.9  -1.7   93  217-313   309-426 (453)
 61 pfam08899 DUF1844 Domain of un  26.6      38 0.00098   13.3   2.9   16   71-86     52-67  (74)
 62 pfam06556 ASFV_p27 IAP-like pr  24.9      32 0.00082   13.8   1.0   10  223-232   100-109 (131)
 63 KOG0011 consensus               24.4      35 0.00089   13.5   1.1   86  216-312   221-313 (340)
 64 cd02023 UMPK Uridine monophosp  24.2      42  0.0011   13.0   2.7   41  257-297   155-196 (198)
 65 pfam02007 MtrH Tetrahydrometha  22.2      46  0.0012   12.7   3.5   42   81-129    78-119 (296)
 66 TIGR00693 thiE thiamine-phosph  20.6      18 0.00046   15.5  -1.0   46  270-315    92-141 (210)
 67 pfam05756 S-antigen S-antigen   20.0      51  0.0013   12.4   2.1   30  198-227     6-35  (310)

No 1  
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00  E-value=0  Score=754.29  Aligned_cols=349  Identities=68%  Similarity=1.193  Sum_probs=341.3

Q ss_pred             CCCCCHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             43641000654578813374868899800017861679999999999457987036747989985202689989999999
Q gi|254780964|r    4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK   83 (352)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~   83 (352)
                      .++...+..+..|++++++||||+++|+++|.||||||+|++|+++.+|||.|+||||++|++||++.++||++||++++
T Consensus        43 ~~~~~~~~~~~~r~~~~~k~~in~~~d~nql~P~kY~WA~e~y~~~~anhW~PeEV~m~~Di~dWk~~~~Ltd~Er~~i~  122 (391)
T PRK07209         43 ATGLEELEGGAARVNVDDKRIINCRADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKSPNGLTEDERRIVK  122 (391)
T ss_pred             CCCHHHHHCCCCCCCCCCCCEECCCCCHHHCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             55366764347766745210022656330038878789999999997768975654777789985265789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986433334556664013305779999999999999977899999999714646999999972001898778899
Q gi|254780964|r   84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL  163 (352)
Q Consensus        84 ~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~  163 (352)
                      ++|+||+++|++|++|+...+.+++++||+++|+++|+++|+||+.||++|++|+++|++|+|++++++|+|++|++|+.
T Consensus       123 ~iL~FFa~sDsiV~nNl~~~~~~~it~PE~r~~l~rQa~eEaIH~~aYs~lleslg~d~~Eif~a~~~ipsi~~K~df~~  202 (391)
T PRK07209        123 RNLGFFSTADSLVANNIVLAIYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNMYHEVPSIRAKDEFLL  202 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHH
T ss_conf             99999867789998509999886569699999999999999999999999998118988999999952788998999999


Q ss_pred             HHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99974012101026777401499999999740001444114788998997598012899999998566666999999999
Q gi|254780964|r  164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN  243 (352)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~  243 (352)
                      ++.+.+.++.+.+++.++++.|++++++|++++|||+|||||+++|+|+|+|||+|+|++++||+|||++|+.|++.+|+
T Consensus       203 ~~~~~l~d~~f~~~t~e~~~~f~~~Li~F~~i~EGifFysgFa~il~l~RrgkM~G~~~~~~~i~RDEslH~~f~~~li~  282 (391)
T PRK07209        203 PFTRALTDPNFKTGTPEADQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGAAEQYQYILRDESMHLNFGIDLIN  282 (391)
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99998625454568802599999999999999879999999999999875145757587764632027889999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             76553754220678999999999999876886887518884799989999999999999999788798899988832578
Q gi|254780964|r  244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM  323 (352)
Q Consensus       244 ~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~  323 (352)
                      ++++|+|++||++++++|++++++||++|++|+++++|.|++|||++++++||+|+|||||.+||++++|+..+||+|||
T Consensus       283 ~i~~EnP~l~t~e~~~~i~~~~~eAVelE~~f~~d~lp~gilGlna~~~~~YI~yiAdrRL~qLGl~~~y~~~~NPfpWm  362 (391)
T PRK07209        283 QIKLENPHLWTAEFQAEIRELILEAVELEYRYARDTMPRGVLGLNASMFKDYLRFIANRRLQQIGLDPLYPGTENPFPWM  362 (391)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf             98741842277789999999999999999999997546887898999999999999989999879998789999980079


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99717886755576671122105867789
Q gi|254780964|r  324 SEVIDLKKEKNFFETRVTEYQQGAELKWD  352 (352)
Q Consensus       324 ~~~~~~~~~tnFFe~~~t~Y~k~~~~~~d  352 (352)
                      ++.+++.++|||||+|||+|||||+++||
T Consensus       363 ~e~idl~~~tNFFE~RVteYq~~g~l~wd  391 (391)
T PRK07209        363 SEMIDLKKEKNFFETRVIEYQTGGALSWD  391 (391)
T ss_pred             HHHHCCCCCCCCCCCCHHHHHCCCCCCCC
T ss_conf             98627332135133208776206657889


No 2  
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=100.00  E-value=0  Score=644.85  Aligned_cols=308  Identities=27%  Similarity=0.478  Sum_probs=289.3

Q ss_pred             CCC--CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             800--017861679999999999457987036747989985202689989999999999999864333345566640133
Q gi|254780964|r   30 DVN--QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH  107 (352)
Q Consensus        30 ~~~--~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~  107 (352)
                      +++  +++||+|||+|++|+||+++||+|+||||++|+.||++ .+||+.||++++++|+|||++|++|++|+..++++.
T Consensus        94 ~~~~~tykP~~Yp~awe~ykk~~~~~Wt~eEIdL~~Dv~DW~~-~kLtd~Er~fIk~iLaFFA~sD~iV~eNl~~~f~~e  172 (410)
T PRK12759         94 TTFSKTYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDVAVGQNYYDQFIPL  172 (410)
T ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2115665784388999999999980797676465441887601-789979999999999999757999999999999987


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHH
Q ss_conf             05779999999999999977899999999714646999999972001898778899999740121010267774014999
Q gi|254780964|r  108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ  187 (352)
Q Consensus       108 ~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (352)
                      +++||+|+++++|+++|+||+++||++++|++.|+.| |+++.++|++++|++|+.++.             +..+..+.
T Consensus       173 v~~pEar~fy~~Qa~~E~IHse~YslLidTl~~~d~e-f~a~~~~p~i~~K~~~~~~~~-------------~~~~~~~a  238 (410)
T PRK12759        173 FKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKAMTDKIDFMMDAD-------------PTTRRGLG  238 (410)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHCCC-------------CCHHHHHH
T ss_conf             4789999999999999999999999999985698899-999998599998999984689-------------32788999


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999740001444114788998997598012899999998566666999999999765537542206789999999999
Q gi|254780964|r  188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE  267 (352)
Q Consensus       188 ~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~e  267 (352)
                      .+++++++.|||+|++||+++|||+++|+|||++++++||+|||++|+.|++.|++++++|+|++++++++++|++++++
T Consensus       239 ~~l~~~~f~EGifFsgSFa~I~~lkkrglMpGL~~sne~I~RDEglH~eFa~~Lf~~~~~e~p~i~~~~~~~~I~~ii~e  318 (410)
T PRK12759        239 LCLAKTVFNEGVALFASFAMLLNFQRFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASK  318 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             99999999847899999999997131688740131200011201336899999999997637120777899999999999


Q ss_pred             HHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             998768868875188847-9998999999999999999978879889998883257899717886755576671122105
Q gi|254780964|r  268 ATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG  346 (352)
Q Consensus       268 ave~E~~~~~~~~~~~~~-Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~~~~~~~~~tnFFe~~~t~Y~k~  346 (352)
                      ||++|.+|++.++|.+.+ |||+++|++||+|+|||||.+||++|+|++++||+|||++.+++.++|||||+|||+||||
T Consensus       319 AVeiE~~Fi~~alp~~~I~Gmn~~~m~qYIeyVADRlL~qLG~~kiy~~~~NPf~wMe~il~~~~ktNFFE~RVtEYqka  398 (410)
T PRK12759        319 AVELEDRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTNFFENRVTEYEVA  398 (410)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHC
T ss_conf             99999999997466677899899999999999999999986999878999998279999876755577567768877627


Q ss_pred             C-CCCCC
Q ss_conf             8-67789
Q gi|254780964|r  347 A-ELKWD  352 (352)
Q Consensus       347 ~-~~~~d  352 (352)
                      | .|+||
T Consensus       399 gv~g~wd  405 (410)
T PRK12759        399 GLTGSWD  405 (410)
T ss_pred             CCCCCHH
T ss_conf             7576488


No 3  
>PTZ00211 ribonucleotide reductase small subunit; Provisional
Probab=100.00  E-value=0  Score=619.36  Aligned_cols=310  Identities=31%  Similarity=0.598  Sum_probs=289.8

Q ss_pred             CCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78813374868899800017861679999999999457987036747989985202689989999999999999864333
Q gi|254780964|r   16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL   95 (352)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~   95 (352)
                      +.+..+++|+.|+++|++++|+||||+|++|++++++||+|+||||++|++||++   ||+.||++++++|++|+++|++
T Consensus         6 ~~~q~~e~~l~~n~~R~~l~P~kYp~~~~~ykk~~~~fW~peEi~ls~D~~dw~~---Lt~~Er~~~~~iL~~~t~~D~~   82 (330)
T PTZ00211          6 KENEVEEPLLKENPDRYVLFPIKYPDIWRKYKKAEASFWTVEEIDLGNDLKDWEK---LNDGERHFIKHVLAFFAASDGI   82 (330)
T ss_pred             HHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHH
T ss_conf             4101048534689874355286367999999999975897330263323999976---9999999999999999999999


Q ss_pred             HHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             3455666401330577999999999999997789999999971464699---9999972001898778899999740121
Q gi|254780964|r   96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSP  172 (352)
Q Consensus        96 v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~~~i~~k~~~~~~~~~~~~~~  172 (352)
                      |+++++..+++.++.||+++++++|++||+||++|||+|++++++|+.+   +|+++.++|.+++|++|+.++++     
T Consensus        83 v~~~l~~~~~~~i~~pE~~~~~~~q~~~E~IH~~sYs~ii~tl~~d~~e~~~if~~~~~~~~i~~k~~~~~~~~~-----  157 (330)
T PTZ00211         83 VLENLAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKDRLFHAIETIPCIKKKAEWAIRWIN-----  157 (330)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_conf             972299999886787999999999999999999999999999749878999999999999999999999997516-----


Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             01026777401499999999740001444114788998997598012899999998566666999999999765537542
Q gi|254780964|r  173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL  252 (352)
Q Consensus       173 ~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l  252 (352)
                              ++..+.++++++ +++|||+|||||+++|+|+++|+|+|+|++|+||+|||++|+.|++.|+++++.+.|  
T Consensus       158 --------~~~~~~~~lva~-~~lEgi~F~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~--  226 (330)
T PTZ00211        158 --------SSASFAERLVAF-AAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLP--  226 (330)
T ss_pred             --------CCHHHHHHHHHH-HHCCCHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_conf             --------953699999998-702320330118999999974974117998889982099999999999999756299--


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf             20678999999999999876886887518884799989999999999999999788798899988832578997178867
Q gi|254780964|r  253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE  332 (352)
Q Consensus       253 ~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~~~~~~~~~  332 (352)
                           .+++++++++||++|.+|+.++++.+++||+++++++||+|+||+||.+||++|+|++ +||+|||+ .+++.++
T Consensus       227 -----~e~v~~~~~eAvelE~~f~~~~~~~~~iGl~~e~l~~Yi~y~An~rL~~LG~~~~f~~-~nP~~w~~-~~~~~~k  299 (330)
T PTZ00211        227 -----RERVQEIIKDAVEIEREFICDALPVDLIGMNSRLMAQYIEFVADRLLVSLGYEKIYNS-KNPFDWME-MISLQGK  299 (330)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHH-HHCCCCC
T ss_conf             -----9999999999999999999987367866999999999999999999998799988899-99845899-8546888


Q ss_pred             CCCCCCCCCCCCCCCCCCC
Q ss_conf             5557667112210586778
Q gi|254780964|r  333 KNFFETRVTEYQQGAELKW  351 (352)
Q Consensus       333 tnFFe~~~t~Y~k~~~~~~  351 (352)
                      |||||+|||+|+|||.+.+
T Consensus       300 tnFFE~r~t~Y~kag~~~~  318 (330)
T PTZ00211        300 TNFFEKKVGEYQKAGVMSE  318 (330)
T ss_pred             CCCCCCCHHHHHHCCCCCC
T ss_conf             8876677888877035645


No 4  
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00  E-value=0  Score=617.51  Aligned_cols=334  Identities=37%  Similarity=0.628  Sum_probs=312.4

Q ss_pred             CHHCCCCCCCCHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             1000654578813374868899-800017861679999999999457987036747989985202689989999999999
Q gi|254780964|r    8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL   86 (352)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l   86 (352)
                      +.+++++++.....+++++|++ +.++++|+||||+|++|+++.+|||.|+||||++|+.||++   ||+.||++++++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~iky~~~~~~y~~~~~nFW~PeeI~ls~D~~dw~~---Ls~~Ek~~~~~vl   78 (348)
T COG0208           2 YKIFNPTKNDELEEPKIFNGNPTNAINWNPIKYPWALELYKKLTANFWLPEEIDLSNDIKDWKK---LSDDEKDLIIRVL   78 (348)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHH---CCHHHHHHHHHHH
T ss_conf             7433653567533001036786554557764448999999998865788101576231999876---7999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHH-HHHHHHHHHHHHHHHHH
Q ss_conf             99986433334556664013305779999999999999977899999999714646--9999-99972001898778899
Q gi|254780964|r   87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF-NMYREVPSITAKANWAL  163 (352)
Q Consensus        87 ~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~--~e~f-~~~~~~~~i~~k~~~~~  163 (352)
                      ++|+++|++|++++...+.++++.||+++++++|++||+||++|||+|++|+++++  .++| ++..+.+.+++|+.++.
T Consensus        79 ~~lt~lDsiq~~~~~~~~~~~v~~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e~~~~~~~~~~~~~~~l~~k~~~i~  158 (348)
T COG0208          79 AFLTLLDSIQANNGVPALSPLVTTPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTEDEDEVFDDWVATNEILQEKAEIIL  158 (348)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             99999998886011888998746879999999999999999999999999858970067999998752499999999999


Q ss_pred             HHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99974012101026777401499999999740001444114788998997598012899999998566666999999999
Q gi|254780964|r  164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN  243 (352)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~  243 (352)
                      ++|.+ .....    .+..+.++.+++++++++||++|||||+++|+|++||||+|++++|++|+|||++|+.|++++++
T Consensus       159 ~~y~~-~~~~~----~~~~~~~~~~~~v~~~~lEgi~FYsGFa~~~~l~~r~kM~g~a~iirlI~RDE~~H~~~~~~l~~  233 (348)
T COG0208         159 RYYDD-LGDDP----DDPLEEFLLKLVVASVILEGILFYSGFAYPLYLARRGKMPGTAEIIRLIIRDEALHLYFIGYLIQ  233 (348)
T ss_pred             HHHHH-CCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99873-16785----54248999999999999999999978999999876268877799999999779999989999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf             76553754220678999999999999876886887518884799989999999999999999788798899988832578
Q gi|254780964|r  244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM  323 (352)
Q Consensus       244 ~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~  323 (352)
                      .++.|+|+++++++++++++++.+||++|++|+.++++ |++|||.+.+++||+|+||+||++||++|+|+...||+||+
T Consensus       234 ~~~~e~~~~~t~e~~~~~~~l~~~ave~E~~y~~~~~~-~~~Glt~d~~~~Yi~y~ankrL~~lG~~~~y~~~~NP~~~~  312 (348)
T COG0208         234 RLVAENPELWTAELKDEIYDLFKEAVELEKEYAEYLYP-GILGLTEDLVKQYIRYNANKRLQNLGLEPLYPAEENPIPWI  312 (348)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf             99873838556888999999999999999999998735-65799889999999999879999759998899878965799


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf             997178867555766711221058-677
Q gi|254780964|r  324 SEVIDLKKEKNFFETRVTEYQQGA-ELK  350 (352)
Q Consensus       324 ~~~~~~~~~tnFFe~~~t~Y~k~~-~~~  350 (352)
                      +..+++.+++||||+|+++|+||+ ...
T Consensus       313 ~~~~~~~~~~dFFe~~~ssY~~~~~~~~  340 (348)
T COG0208         313 ELSLSADEKTDFFEGRVSSYQKGSVASE  340 (348)
T ss_pred             HHHCCCCCCCCCCCCCCCHHHHHHCCCC
T ss_conf             8623433357750046416776104567


No 5  
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00  E-value=0  Score=614.42  Aligned_cols=335  Identities=22%  Similarity=0.329  Sum_probs=303.2

Q ss_pred             HHCCCCCCCCHHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             000654578813374868899-8000178616799999999994579870367479899852026899899999999999
Q gi|254780964|r    9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG   87 (352)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~   87 (352)
                      -+||..+ ++.-++||+.|++ ++.++..+||||++++|++|+++||+|+||||++|+.||++   ||+.||++++++|+
T Consensus         4 ~~fn~~~-~d~~~~p~F~G~~~~i~~~~~~kYp~~~~Lykkq~~~FW~PEEIdLs~D~~d~~~---Lt~~Ek~~f~~~L~   79 (376)
T PRK09101          4 TTFSQTK-NDQLKEPMFFGQSVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLK   79 (376)
T ss_pred             EECCCCC-CCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHH---CCHHHHHHHHHHHH
T ss_conf             1106887-6300288427997442143201457999999999867898311223631999987---79999999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99864333345566640133057799999999999999778999999997146469999999720018987788999997
Q gi|254780964|r   88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ  167 (352)
Q Consensus        88 ~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~  167 (352)
                      +|+.+||+|++++..++++++++||+++++++|+++|+||++|||+|++++..|++++|+.+.++|++.+|++++.++|+
T Consensus        80 f~t~lDSiq~~n~~~~f~~~is~PE~~~~~~~q~~~E~IHs~SYs~Ii~t~~~dp~eiFd~i~~~~~i~kra~~i~~~yd  159 (376)
T PRK09101         80 YQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAEDISSYYD  159 (376)
T ss_pred             HHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999853507677554679999999999999999999999999998628989999999847999999999999989


Q ss_pred             HHCCCHHH----------CC-------CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             40121010----------26-------77740149999999974000144411478899899759801289999999856
Q gi|254780964|r  168 TLSSPSFT----------TG-------TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD  230 (352)
Q Consensus       168 ~~~~~~~~----------~~-------~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RD  230 (352)
                      .+......          ..       ..+-++.++.++ ++..++|||+||+||+++|+|+++|+|+|++++|+||+||
T Consensus       160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~l~~al-va~~iLEgi~F~~~F~~~~~~~~~~~m~g~~~~~~~i~rD  238 (376)
T PRK09101        160 DLIEMTQYYHLLGEGTHTVNGKTVTVNLRELKKKLYLCL-MSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARD  238 (376)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             999887888751443101255411001688999999999-9999876899899999999998648884579999999971


Q ss_pred             HHHHHHHHHHHHHHHHH--HCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             66669999999997655--375422--067899999999999987688688751888-4799989999999999999999
Q gi|254780964|r  231 ESLHLNFGIDVINQIKI--ENPHLW--TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCH  305 (352)
Q Consensus       231 E~lH~~f~~~l~~~l~~--E~p~l~--~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~~~~yi~y~an~rL~  305 (352)
                      |++|+.+++.+++.++.  ++|+++  ++++++++++|+++||++|++|++|+|++| ++|||++.+++||+|+||+||+
T Consensus       239 E~~Hl~~~~~ii~~l~~~~e~pe~~~~~~e~~~~v~~m~~~ave~E~~wa~ylf~~G~iiGLn~~~l~~Yi~ylan~Rl~  318 (376)
T PRK09101        239 EALHLTGTQHMLNLMRSGKDDPEMAEIAEECKQECYDLFVQAAEQEKEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQ  318 (376)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99899999999999985389827889999999999999999999999999996669971688999999999999999999


Q ss_pred             HCCCCCCCCCCCCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf             78879889998883257899717886-75557667112210586
Q gi|254780964|r  306 QIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAE  348 (352)
Q Consensus       306 ~lG~~~~f~~~~nP~~W~~~~~~~~~-~tnFFe~~~t~Y~k~~~  348 (352)
                      +||++++|+..+||+|||+.+++.++ ++||||+++|+|.+|+.
T Consensus       319 ~lGl~~~y~~~~NPlpWm~~~~~~~~~q~a~qE~evtsY~~g~~  362 (376)
T PRK09101        319 AVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI  362 (376)
T ss_pred             HCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECC
T ss_conf             76999999999998458999865576746731201300112142


No 6  
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00  E-value=0  Score=598.03  Aligned_cols=314  Identities=29%  Similarity=0.484  Sum_probs=288.3

Q ss_pred             HCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             374868899-8000178616799999999994579870367479899852026899899999999999998643333455
Q gi|254780964|r   21 DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN   99 (352)
Q Consensus        21 ~~~~~~~~~-~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~   99 (352)
                      .++|++|.+ +..+++|++|||+|++|++++++||+|+||||++|++||++   ||+.||++++++|++||++|++|+++
T Consensus         2 ~~~~~~g~~~~~~n~~~~~y~~~~~~y~~~~~~fW~peEi~l~~D~~dw~~---Lt~~Ek~~~~~~L~~~t~~D~~v~~~   78 (325)
T PRK09614          2 SRKIIMGNLYSAINWNKIEDPWDYEAWKRLTANFWLPEEVPLSNDLKDWKK---LSAEEKNLYTRVFGGLTLLDTLQNNN   78 (325)
T ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             860058996766235965678999999999857899635380200999987---99999999999999999985765505


Q ss_pred             HHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
Q ss_conf             66640133057799999999999999778999999997146469--9999997200189877889999974012101026
Q gi|254780964|r  100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTG  177 (352)
Q Consensus       100 ~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~  177 (352)
                      +...+.+.+++||+++++++|+++|+||++|||+|+++|+++++  ++|+++.++|.|++|++|+.++++.         
T Consensus        79 ~~~~~~~~~~~pE~~~~~~~q~~~E~iH~~sYs~il~tl~~~~~~~~~f~~~~~~~~i~~k~~~i~~~y~~---------  149 (325)
T PRK09614         79 GMPNIMPDITTPEEKAVLANIAFMEAVHAKSYSYILSTLCTPEEIDEAFEWVEENPYLQKKADIIMQVYEE---------  149 (325)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCC---------
T ss_conf             89998504994899999999999999999999999998199488999999997069999999999998727---------


Q ss_pred             CCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             77740149999999974000144411478899899759801289999999856666699999999976553754220678
Q gi|254780964|r  178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF  257 (352)
Q Consensus       178 ~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~  257 (352)
                        +..+.+++++++ ++++|||+|||||+++++|+++|+|+|+|++|+||+|||++|+.|++.|++++++|+|+++++++
T Consensus       150 --~~~~~~~~~lva-~~~lEGi~FyssFa~~~~f~~~g~m~G~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~  226 (325)
T PRK09614        150 --ETKEDPLKALVA-SVFLEGFLFYSGFYYPLYLARQGKMTGTGQIIRLIIRDESLHGYYIGYLFQAGLEELPELEQEEL  226 (325)
T ss_pred             --CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             --646789999999-99987999998899999999859662589999999987888899999999999863988557999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH-CCCCCCCCC
Q ss_conf             9999999999998768868875188847999899999999999999997887988999888325789971-788675557
Q gi|254780964|r  258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI-DLKKEKNFF  336 (352)
Q Consensus       258 ~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~~~~-~~~~~tnFF  336 (352)
                      ++++++++++||++|++|++++++  ++|+ .+++++||+|+||+||.+||++|+|++..+|.|||+.+. +..++||||
T Consensus       227 ~~~i~~~~~eave~E~~~~~~~~~--~~Gl-~~~~~~Yi~y~an~~L~~lG~~~~f~~~~~~p~w~~~~~~~~~~~tnFF  303 (325)
T PRK09614        227 KDEIYDLLYELYENEEAYTELLYD--ILGL-TEDVKKYIRYNANKALMNLGLEPLYPEEEVNPIWLNGLSNNADENHDFF  303 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC--CCCC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf             999999999999999999999855--4787-8999999999999999977999889998899779999885778045898


Q ss_pred             CCCCCCCCCCCC-CCCC
Q ss_conf             667112210586-7789
Q gi|254780964|r  337 ETRVTEYQQGAE-LKWD  352 (352)
Q Consensus       337 e~~~t~Y~k~~~-~~~d  352 (352)
                      |+|||+|+||+. ..||
T Consensus       304 E~r~t~Y~k~~~~~~~D  320 (325)
T PRK09614        304 EGKGTSYSKGSVEATFD  320 (325)
T ss_pred             CCCHHHHHHCCCCCCCC
T ss_conf             78711323156678843


No 7  
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00  E-value=0  Score=562.80  Aligned_cols=296  Identities=22%  Similarity=0.342  Sum_probs=273.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHH
Q ss_conf             01786167999999999945798703674798998520268998999999999999986433334556664013305779
Q gi|254780964|r   33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE  112 (352)
Q Consensus        33 ~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E  112 (352)
                      +++.++|||++++|+++.+|||.|+||||++|++||++   ||++||++++++|++||++|++|++++...+.+.++.||
T Consensus        15 Nwn~~~~~~~~~~y~~~~~nfW~PeEI~l~~D~~dw~~---Lt~~Ek~~~~~iL~~lt~lDs~q~~~~~~~~~~~~~~pE   91 (324)
T PRK13966         15 NWNRLQDEKDAEVWDRLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALTPH   91 (324)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCEECCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf             78886568999999999968788710342412999976---999999999999999999999997652998988748899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHH
Q ss_conf             999999999999977899999999714646--999999972001898778899999740121010267774014999999
Q gi|254780964|r  113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF  190 (352)
Q Consensus       113 ~~~~l~~q~~~E~iH~~sYs~il~~l~~~~--~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  190 (352)
                      +++++++|++||+||++|||+|+++++.++  .++|+++.++|.+++|++++.++++.             +.. +.+. 
T Consensus        92 ~~~~l~~~a~~E~IHs~SYs~i~~tl~~~~e~~~~f~~~~~~~~l~~k~~~i~~~~~~-------------d~~-~~~~-  156 (324)
T PRK13966         92 EEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEENRNLQRKAEIVLQYYRG-------------DEP-LKRK-  156 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-------------CHH-HHHH-
T ss_conf             9999999999999999999999998089251899999985089999999999999618-------------789-9999-


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99740001444114788998997598012899999998566666999999999765537542206789999999999998
Q gi|254780964|r  191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL  270 (352)
Q Consensus       191 ~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave  270 (352)
                      ++++++||++|||||+++|+|+++|||+|+|++|+||+|||++|+.+.+.+++....+.|+++++++.+++++++.++++
T Consensus       157 va~~~lEg~~FysgFa~~l~l~~~~kM~G~~~ii~~I~RDEs~H~~~~~~l~~~~~~~~~~~~~~e~~~~i~~~~~~~v~  236 (324)
T PRK13966        157 VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFELYD  236 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999985699867899999999837888879999999988854877689999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             76886887518884799989999999999999999788798899988---832578997178867555766711221058
Q gi|254780964|r  271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA  347 (352)
Q Consensus       271 ~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~---nP~~W~~~~~~~~~~tnFFe~~~t~Y~k~~  347 (352)
                      +|++|++++++.  +||+ +++++||+|+||+||++||++|+|+..+   ||++|+...+++.+++||||+|||+|+||+
T Consensus       237 ~E~~~~~~l~~~--~GL~-~dv~~Yi~Y~ANrrL~~LGl~~~fp~~~~~~nP~~~~~~~~~~~~~~nFFE~r~t~Y~~g~  313 (324)
T PRK13966        237 NEVEYTQDLYDE--VGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSALSPNADENHDFFSGSGSSYVIGK  313 (324)
T ss_pred             HHHHHHHHHHCC--CCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHCC
T ss_conf             999999987523--7948-9999999999999999788998899745788946699862256753786788700214165


Q ss_pred             CC
Q ss_conf             67
Q gi|254780964|r  348 EL  349 (352)
Q Consensus       348 ~~  349 (352)
                      +.
T Consensus       314 ~~  315 (324)
T PRK13966        314 AV  315 (324)
T ss_pred             CC
T ss_conf             66


No 8  
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00  E-value=0  Score=548.04  Aligned_cols=299  Identities=21%  Similarity=0.268  Sum_probs=264.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHH
Q ss_conf             01786167999999999945798703674798998520268998999999999999986433334556664013305779
Q gi|254780964|r   33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE  112 (352)
Q Consensus        33 ~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E  112 (352)
                      +++.++|||++.+|+++.+|||+|+||||++|++||++   ||++||++++++|++||++|++|++++...+++.++.||
T Consensus        28 NWn~~~~~~~~~~w~~~~~nFW~PeEI~ls~D~~dw~~---Ls~~Ek~~~~~iL~~lt~lDs~q~~~~~~~~~~~~~~~e  104 (337)
T PRK13965         28 NWNYLNDDKDLEVWNRVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTFTGLTLLDTVQATVGDVAQIPHSQTDH  104 (337)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCEECHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHH
T ss_conf             78887658899999999968687700451744999987---999999999999999999999986552176631068799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHH
Q ss_conf             9999999999999778999999997146469--99999972001898778899999740121010267774014999999
Q gi|254780964|r  113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF  190 (352)
Q Consensus       113 ~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  190 (352)
                      +++++++|++||+||++|||+|++|++.+++  ++|+++.++|.+++|++++.++++.             + ..++++ 
T Consensus       105 ~~~~l~~~~~~EaIHs~SYS~il~tl~~~~e~~e~f~~~~~~~~l~~k~~~i~~~y~~-------------~-~~~~~~-  169 (337)
T PRK13965        105 EQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHEWVVSTESLQDRARVLIPYYTG-------------D-DPLKSK-  169 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-------------C-CHHHHH-
T ss_conf             9999999999999999999999999669876999999871499999999999988528-------------8-699999-


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99740001444114788998997598012899999998566666999999999765537542206789999999999998
Q gi|254780964|r  191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL  270 (352)
Q Consensus       191 ~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave  270 (352)
                      ++++++||++|||||+++|+|+++|||+|+|++|+||+|||++|+.+++.+++...++.+...++++++++++++++||+
T Consensus       170 vas~~lEGi~FysgFa~~l~l~~~gkM~g~~~ii~~I~RDEslH~~~~~~~~~~~~~~~~~e~~~e~~~~v~~~~~~aVe  249 (337)
T PRK13965        170 VAAAMMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYELID  249 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999886698723798878998704888889999999998742987789999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHC--CCCCCCCCCCCCCCCCCCC
Q ss_conf             76886887518884799989999999999999999788798899988-83257899717--8867555766711221058
Q gi|254780964|r  271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEKNFFETRVTEYQQGA  347 (352)
Q Consensus       271 ~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~-nP~~W~~~~~~--~~~~tnFFe~~~t~Y~k~~  347 (352)
                      +|++|++++++.  +|| .+++++||+|+||+||.+||++|+|++.+ +|.||+-..++  +.+++||||+|||+|+||+
T Consensus       250 lE~~~~~~~~~~--~gl-~~~l~~YI~YiANrrL~~LGl~~~y~~~~~~~~P~~~~~~~~~~~~~~dFFE~r~t~Y~~g~  326 (337)
T PRK13965        250 LEKAYLRELYAG--FDL-AEDAIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQLSARADENHDFFSGNGSSYVMGI  326 (337)
T ss_pred             HHHHHHHHHHHC--CCH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHEE
T ss_conf             999999999836--776-99999999999999999779988899867888814589760478867785477721002100


Q ss_pred             C-CCCC
Q ss_conf             6-7789
Q gi|254780964|r  348 E-LKWD  352 (352)
Q Consensus       348 ~-~~~d  352 (352)
                      . ..||
T Consensus       327 ~~~~~d  332 (337)
T PRK13965        327 TEETTD  332 (337)
T ss_pred             CCCCCC
T ss_conf             578823


No 9  
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00  E-value=0  Score=542.50  Aligned_cols=299  Identities=22%  Similarity=0.345  Sum_probs=267.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHH
Q ss_conf             01786167999999999945798703674798998520268998999999999999986433334556664013305779
Q gi|254780964|r   33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE  112 (352)
Q Consensus        33 ~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E  112 (352)
                      +++.++||+++++|+++.+|||.|+||||++|++||++   |++.||++++++|++|+++|++|+.+....+.+.++.||
T Consensus        13 NWn~~~~~~~~~~w~~~~~nfW~PeEI~ls~Di~dw~~---L~~~Ek~~~~~il~~lt~lDs~q~~~~~~~~~~~~~~pe   89 (322)
T PRK13967         13 NWNRLLDAKDLQVWERLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDAVTPH   89 (322)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf             88887768899999999978888712162422999876---999999999999999999999998224988888728999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHH
Q ss_conf             999999999999977899999999714646--999999972001898778899999740121010267774014999999
Q gi|254780964|r  113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF  190 (352)
Q Consensus       113 ~~~~l~~q~~~E~iH~~sYs~il~~l~~~~--~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  190 (352)
                      +++++++|++||+||++|||+|++|++.++  +++|+++.++|.+++|++++.++++.             +.. +.+ .
T Consensus        90 ~~~~l~~~a~~EaIHs~SYs~i~~tl~~~~e~~~~f~~~~~~p~l~~k~~~~~~~~~~-------------~~~-~~~-~  154 (322)
T PRK13967         90 EEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWSEQNPYLQRKAQIIVDYYRG-------------DDA-LKR-K  154 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCC-------------CHH-HHH-H
T ss_conf             9999999999999999999999998589677999999996399999999999998238-------------759-999-9


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99740001444114788998997598012899999998566666999999999765537542206789999999999998
Q gi|254780964|r  191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL  270 (352)
Q Consensus       191 ~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave  270 (352)
                      ++++++||++|||||+++|+|+++|||+|+|++|+||+|||++|+.+...+++....+.|+.+++++++++++++.++|+
T Consensus       155 ~~~~~lEGi~FYsgF~~~l~~~~~gkM~G~~~ii~~I~RDEslH~~~~~~~~~~~~~~~~~~~~~e~~e~~~~~~~~~v~  234 (322)
T PRK13967        155 ASSVMLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHTLYA  234 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999984699877899999999828888999999999874523787789999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCHHHHHHHHC--CCCCCCCCCCCCCCCCCCC
Q ss_conf             76886887518884799989999999999999999788798899988-83257899717--8867555766711221058
Q gi|254780964|r  271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEKNFFETRVTEYQQGA  347 (352)
Q Consensus       271 ~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~-nP~~W~~~~~~--~~~~tnFFe~~~t~Y~k~~  347 (352)
                      +|++|++++++.  +||+ +++++||+|+||+||.+||++|+|+.+. ++.||+...++  +.+++||||+|||+|+||+
T Consensus       235 ~Ei~~~~~l~~~--lGl~-~dv~~YI~YiANrrL~~LGl~p~y~~~~~~~nP~~~~~~~~~~~~~~dFFe~r~t~Y~k~~  311 (322)
T PRK13967        235 NEIDYAHDLYDE--LGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAALDPGAGENHDFFSGSGSSYVMGT  311 (322)
T ss_pred             HHHHHHHHHHHC--CCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHCC
T ss_conf             999999998712--2868-9999999899999999788999999855778836688757687632685578864004325


Q ss_pred             C-CCCC
Q ss_conf             6-7789
Q gi|254780964|r  348 E-LKWD  352 (352)
Q Consensus       348 ~-~~~d  352 (352)
                      + ..||
T Consensus       312 ~~~~~d  317 (322)
T PRK13967        312 HQPTTD  317 (322)
T ss_pred             CCCCCC
T ss_conf             667765


No 10 
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=100.00  E-value=0  Score=536.48  Aligned_cols=284  Identities=41%  Similarity=0.771  Sum_probs=271.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCH
Q ss_conf             00178616799999999994579870367479899852026899899999999999998643333455666401330577
Q gi|254780964|r   32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP  111 (352)
Q Consensus        32 ~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~  111 (352)
                      ++++|+||||+|++|++++++||+|+|||+++|++||++   ||++||++++++|++|+++|++|++++...+.+.++.|
T Consensus         1 ~~~~p~~y~~~~~~y~~~~~~fW~~eEi~l~~D~~dw~~---lt~~ek~~~~~~La~~~~~D~~v~~~~~~~~~~~~~~p   77 (288)
T cd01049           1 FNLNPIKYPWAWELYKKAEANFWTPEEIDLSKDLKDWEK---LTEAERHFIKRVLAFLAALDSIVGENLVELFSRHVQIP   77 (288)
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             987887777999999999877998310073621999987---99999999999999999985688733899987635878


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHH
Q ss_conf             9999999999999977899999999714646--99999997200189877889999974012101026777401499999
Q gi|254780964|r  112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL  189 (352)
Q Consensus       112 E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~--~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (352)
                      |+++++++|+++|+||++|||+|++++++++  +++|+++.++|.+++|++|+.++++....        +.++.+++++
T Consensus        78 E~~~~~~~q~~~E~iHs~sYs~il~~l~~~~~~~~~f~~~~~~~~i~~k~~~~~~~~~~~~~--------~~~~~~~~~l  149 (288)
T cd01049          78 EARAFYGFQAFMENIHSESYSYILDTLGKDEERDELFEAIETDPALKKKADWILRWYDNLDD--------NTKESFAERL  149 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC--------CCHHHHHHHH
T ss_conf             99999999999999999999999998679877899999985279999999999999972335--------2168999999


Q ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99974000144411478899899759801289999999856666699999999976553754220678999999999999
Q gi|254780964|r  190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT  269 (352)
Q Consensus       190 i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eav  269 (352)
                      +++ +++||++|||||+++++|+++|+|+|++++|++|+|||++|+.|++.+++++++|+|+++++++++++++++.+||
T Consensus       150 i~~-~~lEgi~F~s~Fa~~~~l~~~g~m~g~~~~i~~I~rDE~lH~~f~~~l~~~l~~e~~~~~~~~~~~~i~~~~~eav  228 (288)
T cd01049         150 VAF-AILEGIFFYSGFAAIFWLARRGKMPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAV  228 (288)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999-9999999987899999999859860099999999998999999999999998862988565667999999999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHH
Q ss_conf             87688688751888479998999999999999999978879889998-88325789971
Q gi|254780964|r  270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVI  327 (352)
Q Consensus       270 e~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~-~nP~~W~~~~~  327 (352)
                      ++|++|++++++.|++|++.+++++||+|+||+||.+||++++|++. +||+|||+...
T Consensus       229 ~~E~~~~~~~~~~~i~gl~~~~~~~yi~y~an~~l~~lG~~~~f~~~~~nP~~~~~~~~  287 (288)
T cd01049         229 ELEKEFARDLLPDGILGLNKEDMKQYIEYVANRRLENLGLEKLFNVEDKNPFDWMELIS  287 (288)
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
T ss_conf             99999999980688689899999999999999999977999999999999777998751


No 11 
>pfam00268 Ribonuc_red_sm Ribonucleotide reductase, small chain.
Probab=100.00  E-value=0  Score=525.21  Aligned_cols=275  Identities=28%  Similarity=0.468  Sum_probs=254.6

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74868899800017861679999999999457987036747989985202689989999999999999864333345566
Q gi|254780964|r   22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV  101 (352)
Q Consensus        22 ~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~  101 (352)
                      ++++.++++++  +|+||||+|++|++++++||+|+||||++|++||++   ||+.||++++++|++||++|++|+++++
T Consensus         1 e~~l~en~~r~--~PikYp~~~~~yk~~~~~fW~peEi~l~~D~~dw~~---Lt~~Er~~~~~iL~~~t~~D~~v~~~~~   75 (281)
T pfam00268         1 EPLLRENSKRF--YPIQHPDIWELYKKAEANRWLAEEVDLSKDIPDWEK---LNEAEREFYSFVFAFLAAADGIVNENLA   75 (281)
T ss_pred             CCCCCCCCCCC--CCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99877861235--698585999999999977899621271411999987---9999999999999999999999998789


Q ss_pred             HHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
Q ss_conf             640133057799999999999999778999999997146469---99999972001898778899999740121010267
Q gi|254780964|r  102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT  178 (352)
Q Consensus       102 ~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~---e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~  178 (352)
                      ..+++.++.||+++++++|+++|+||++|||+++++|++|+.   ++|+++.++|.+++|++|+.++++           
T Consensus        76 ~~~~~~~~~pE~~~~~~~q~~~E~IH~~sYs~il~tl~~d~~e~~~~f~~~~~~~~i~~k~~~~~~~~~-----------  144 (281)
T pfam00268        76 ERLSAEFQQKDILHYYGEQIAIENVHSEVYSLIQLTLFNDEKERDAYFNAIETDPAIQRKAQWLLRWVR-----------  144 (281)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_conf             999987784999999999999999999999999998738917899999999988999999999999852-----------


Q ss_pred             CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             77401499999999740001444114788998997598012899999998566666999999999765537542206789
Q gi|254780964|r  179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ  258 (352)
Q Consensus       179 ~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~  258 (352)
                        ++..+.+++++ ++++|||+|||||+++++|+++|+|+|+|++|+||+|||++|+.|++.+++++++++     ++..
T Consensus       145 --~~~~~~~~lva-~~~lEgi~f~s~Fa~~~~l~~~~~m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~-----~~~~  216 (281)
T pfam00268       145 --DAESLAEKLIA-FALVEGIFFSSSFASIAYLRKRGLMPGTCQSNELISRDEALHTDAACLLYNNYLGLE-----KPEP  216 (281)
T ss_pred             --CCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCH
T ss_conf             --77079999999-999878999876899999997584344999999999989999999999999998735-----8549


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf             999999999998768868875188847999899999999999999997887988999888325
Q gi|254780964|r  259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP  321 (352)
Q Consensus       259 ~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~  321 (352)
                      +++++++++||++|++|++++++.+++||+++++++||+|+||+||.+||++|+|++ +||++
T Consensus       217 ~~v~~~~~eave~E~~~~~~~~~~~~~gl~~~~~~~Yi~y~an~~L~~LG~~~~f~~-~NPf~  278 (281)
T pfam00268       217 KRIYKLFREAVEIEIEFIEAAAPVDVHGMNVRAIKQYIEFSADRLLVAIGYKPLFNV-PNPFF  278 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCC
T ss_conf             999999999999999999986778838979999999999999999997799998999-89899


No 12 
>KOG1567 consensus
Probab=100.00  E-value=0  Score=499.43  Aligned_cols=310  Identities=32%  Similarity=0.571  Sum_probs=291.3

Q ss_pred             CCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57881337486889980001786167999999999945798703674798998520268998999999999999986433
Q gi|254780964|r   15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES   94 (352)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~   94 (352)
                      .....++++++.+++.+++++|+||+..|++|+++++.||+++||++++|..||.+   |+++||+++.++|++|+++|+
T Consensus        18 ~~~~~~~e~ll~~~~~rfv~fpi~y~~iw~~ykkaeasfwtaeevdl~kd~~dw~~---L~~~er~fIs~vlaffaasdG   94 (344)
T KOG1567          18 MKEGEKDEPLLMENPRRFVMFPIKYHDIWQMYKKAEASFWTAEEVDLSKDLDDWEK---LNDDERHFISHVLAFFAASDG   94 (344)
T ss_pred             CCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHH---CCHHHHHHHHHHHHHHHCCCC
T ss_conf             34564335333678877223661259999999764245671877400123466987---070335369999998843665


Q ss_pred             HHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             33455666401330577999999999999997789999999971464699---999997200189877889999974012
Q gi|254780964|r   95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS  171 (352)
Q Consensus        95 ~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e---~f~~~~~~~~i~~k~~~~~~~~~~~~~  171 (352)
                      +|..|+...+...++.||.+.++++|+++|+|||+.||.+++++..|+.|   .|+++.+.|.+++|++|+.+|..    
T Consensus        95 ivnenl~Erfs~evqv~ear~fygfqIaiENIHSEmYSlLidtyIrD~ker~~LFnAI~t~p~vk~KAdWalrWI~----  170 (344)
T KOG1567          95 IVNENLVERFSQEVQVPEARCFYGFQIAIENIHSEMYSLLIDTYIRDPKEREFLFNAIETIPEVKKKADWALRWIS----  170 (344)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_conf             0438999988888615110000224779988789999999999856906665799998723777777799998852----


Q ss_pred             CHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             10102677740149999999974000144411478899899759801289999999856666699999999976553754
Q gi|254780964|r  172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH  251 (352)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~  251 (352)
                              ..+..|..++++|. +.|||+|.+|||.++||.+||+|||+.-.+++|+|||++|+.|+|.++.++++    
T Consensus       171 --------d~~s~faeRlvAFA-avEGIFFSgsFasIFWLKKRGlMPGLTfSNELIsrdeglh~dFacll~~~l~~----  237 (344)
T KOG1567         171 --------DKDSLFAERLVAFA-AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFSHLKK----  237 (344)
T ss_pred             --------CCCCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH----
T ss_conf             --------78750999999999-87411012524665533532878764332135330247761199999999860----


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             22067899999999999987688688751888479998999999999999999978879889998883257899717886
Q gi|254780964|r  252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK  331 (352)
Q Consensus       252 l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~~~nP~~W~~~~~~~~~  331 (352)
                         ++..++|++++.+||++|.+|....+|...+|||...|.+||+++||+.|..||+++.|++ +||++||+ .+.+.+
T Consensus       238 ---kp~~~ri~eII~eAV~IEqef~~eaLPv~liGMN~~lM~qYIEFVADrLL~~lG~~K~Yn~-~NPFdfME-nISl~G  312 (344)
T KOG1567         238 ---KPNEERIEEIITEAVEIEQEFLTEALPVNLIGMNCDLMSQYIEFVADRLLVELGNEKYYNA-ENPFDFME-NISLAG  312 (344)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEECC-CCCHHHHH-HHHHCC
T ss_conf             ---8978999999999999999998711654553457889999999999999998485502057-88168888-735325


Q ss_pred             CCCCCCCCCCCCCCCCCC
Q ss_conf             755576671122105867
Q gi|254780964|r  332 EKNFFETRVTEYQQGAEL  349 (352)
Q Consensus       332 ~tnFFe~~~t~Y~k~~~~  349 (352)
                      +|||||+||++|||++..
T Consensus       313 KTNFFEKrVseYQk~~vM  330 (344)
T KOG1567         313 KTNFFEKRVSEYQKAGVM  330 (344)
T ss_pred             CCCHHHHHHHHHHHCHHC
T ss_conf             441577656776501002


No 13 
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, ferritin-like diiron-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a  heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases.  RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=100.00  E-value=0  Score=384.88  Aligned_cols=253  Identities=19%  Similarity=0.259  Sum_probs=215.3

Q ss_pred             HHHHHHHHHC-CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHCCCHHHHHHHHH
Q ss_conf             9999999945-7987036747989985202689989999999999999864333345566640--133057799999999
Q gi|254780964|r   43 WEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI--YRHLSNPECRQYLLR  119 (352)
Q Consensus        43 ~~ly~k~~~~-fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i--~~~~~~~E~~~~l~~  119 (352)
                      +++|.|+.++ ||+|+||||++|++||++   ||+.||++++++|++|+++|++|+.++...+  ....+.+|+++++++
T Consensus        10 ~~l~~~~~~~nFW~PeEId~s~D~~dW~~---Lt~~Er~~i~~ila~F~~~d~~V~~nl~~~~~~~~~~~~~e~~~~l~~   86 (280)
T cd07911          10 MKLFEKGKRKGFWNPADIDFSQDREDWEQ---LSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMAAEGRLEEEMYLTQ   86 (280)
T ss_pred             HHHHHHHHCCCCCCHHHCCCCCHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             89999764038998477086013888856---999999999999999998588999879999988520375899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             999999778999999997146469--999999720018987788999997401210102677740149999999974000
Q gi|254780964|r  120 QAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE  197 (352)
Q Consensus       120 q~~~E~iH~~sYs~il~~l~~~~~--e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lE  197 (352)
                      |+++|+||++|||+++++++.+++  +.++.....+..+.+.....+           ....+.+...++++++|++++|
T Consensus        87 q~~eEaiH~~sYs~~~~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ilE  155 (280)
T cd07911          87 FLFEEAKHTDFFRRWLDAVGVSDDLSDLHTAVYREPFYEALPYAELR-----------LYLDASPAAQVRASVTYNMIVE  155 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------HCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999846756588885689872899999999997-----------5379988999999999999999


Q ss_pred             HHHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             144411478899-8997598012899999998566666999999999765537542206789999999999998768868
Q gi|254780964|r  198 GMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA  276 (352)
Q Consensus       198 Gi~Fys~Fa~~~-~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~  276 (352)
                      |++|||||+.++ +++++|+|||++++|+||.|||++|+.||+.+++.++.|+|++| +.+.+++.+++..|++++ +++
T Consensus       156 Gi~f~sGf~a~~~~~~~rg~m~G~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~-d~~~e~~~el~~~av~~~-~~~  233 (280)
T cd07911         156 GVLAETGYYAWRTICEKRGILPGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDANW-DVFEERMNELVPHALGLI-DEI  233 (280)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHH-HHH
T ss_conf             999999999999999857988778999999998899999999999999998695678-999999999999999999-999


Q ss_pred             HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             87518884799989999999999999999788798
Q gi|254780964|r  277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP  311 (352)
Q Consensus       277 ~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~  311 (352)
                      ..+++.+++|++.+.+.+|+.++|++||..|+-.+
T Consensus       234 ~~~~~~~~~g~~~~~f~~Y~~~~a~~rLg~i~~~~  268 (280)
T cd07911         234 FELYDEMPFGLDPDELMQYAVDQFQRRLGYIERAR  268 (280)
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             85156556688999999999999998744887852


No 14 
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00  E-value=0  Score=369.55  Aligned_cols=293  Identities=22%  Similarity=0.311  Sum_probs=240.9

Q ss_pred             CCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             45788133748688998000178616799999999994579870367479899852026899899999999999998643
Q gi|254780964|r   14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE   93 (352)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~l~p~kY~~~~~ly~k~~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D   93 (352)
                      ++.+..+.-.+-.|.-||+. +|      +.+|+++.++||.|+|||||+|++||++   ||++||+++++++++|+.+|
T Consensus         6 ~~~~~~~~~~~~~~gl~w~~-~p------~~Ly~~~~~~FW~PeeId~SqD~~Dw~~---Lt~~ER~~~~~i~s~f~age   75 (318)
T PRK08326          6 EGMVRHRSFSLTAGGLNWNS-FP------MKLFAKGNRKFWNPADIDFSRDRADWEK---LSDDERDYATRLCSQFIAGE   75 (318)
T ss_pred             CCCEEECCCCCCCCCCCCCC-HH------HHHHHHHHHCCCCHHHCCCCCCHHHHHH---CCHHHHHHHHHHHHHHHHHH
T ss_conf             65533125420247758550-46------8999986306888775787330898876---89999999999999998607


Q ss_pred             HHHHHHHHHHCCHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             33345566640133057---799999999999999778999999997146469999999720018987788999997401
Q gi|254780964|r   94 SLVANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS  170 (352)
Q Consensus        94 ~~v~~~~~~~i~~~~~~---~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~  170 (352)
                      ++|+.++.. +...++.   +|.++||++|+++|++|++||+++++++|.+++ ++.+..+.|..+..      +++.+.
T Consensus        76 ~~Vt~nl~p-~~~~~~~~~~~e~~l~Lt~qafeEAvHtqsys~~ldtv~~~~d-l~~~~~d~p~~~~~------f~e~l~  147 (318)
T PRK08326         76 EAVTLDIQP-LMAAMRAEGRLEDEMYLTQFAFEEAKHTEAFRRWLDAVGVTED-LHVYTTDLPSYRQI------FYEELP  147 (318)
T ss_pred             HHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHH------HHHHHH
T ss_conf             899976377-8998861584346899999999999999999999999568577-89987513688999------999999


Q ss_pred             CCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             21010267774014999999997400014441147889989-97598012899999998566666999999999765537
Q gi|254780964|r  171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN  249 (352)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l-~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~  249 (352)
                      .....+...+++...++++++|++++||++|||||..++++ .++|+|||++++|++|.|||++|+.||.++++.++.|+
T Consensus       148 ~~l~~l~~dpsp~~~~~A~v~yn~ilEGilfySGf~~~~~~l~~rg~lPG~a~~Ir~I~RDE~rHi~~g~~~~~rlv~e~  227 (318)
T PRK08326        148 AALNALDADPSPEAQVRASVTYNHVVEGILAETGYYAWHKICVRRGILPGLQEGVRRIGDDESRHIAFGTYTCRRLVAAD  227 (318)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99998761999799999999999999999999999999999987688987899999986159999999999999998608


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC---CCCCCCCC--CCCHHHHH
Q ss_conf             54220678999999999999876886887518884799989999999999999999788---79889998--88325789
Q gi|254780964|r  250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG---LEPLFKYT--ENPFPWMS  324 (352)
Q Consensus       250 p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG---~~~~f~~~--~nP~~W~~  324 (352)
                      |++| +.+.+++.+++..|+.+ +.|...+++.-..||+.+++.+|+++++|+||..|+   ..|+...+  -.|..+-+
T Consensus       228 ~~~~-~~~~e~~~el~~~a~~~-~~~~~~~~~~~~~~l~~~~~~~ya~~~~~~Rl~~i~~ar~~~~~~~~~~~~~~~~~~  305 (318)
T PRK08326        228 DSNW-DVFEERMNELIPLALGL-IDEGFALYDVIPFGLSKDEFMQYAADKGQRRLGTISRARGRPLAEIDLDYSPLQLED  305 (318)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHH
T ss_conf             8889-99999999999999877-524410366688899989999999999988899999741997003057789899998


Q ss_pred             HH
Q ss_conf             97
Q gi|254780964|r  325 EV  326 (352)
Q Consensus       325 ~~  326 (352)
                      ..
T Consensus       306 ~~  307 (318)
T PRK08326        306 TF  307 (318)
T ss_pred             HH
T ss_conf             86


No 15 
>cd01054 consensus
Probab=98.10  E-value=0.0011  Score=44.31  Aligned_cols=193  Identities=17%  Similarity=0.138  Sum_probs=132.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---H---HHH
Q ss_conf             6899899999999999998643333455666401330577999999999999997789999999971464---6---999
Q gi|254780964|r   72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---E---GEL  145 (352)
Q Consensus        72 ~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~---~---~e~  145 (352)
                      .+|++.-+.+++..++.+...+-....+. ..+....+.+.++.+..+|++.|..|++--+++...|..+   .   +.-
T Consensus        79 ~~l~~~w~~~l~~~l~~~~~~Eyga~~~~-a~~~r~~~~~~i~n~~~~~a~D~lR~aQ~~~~~~~~l~~~~~~~~~~~~~  157 (296)
T cd01054          79 EALDPEWRETLKRHLGPLRYVEYGAFMAS-AYIARYAPGDTIRNAAAFQALDELRHAQYIAYLRLELAKNYPDFGGGDDA  157 (296)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf             00899999999999730538999999989-99998657699999999998888889999999999986407998865599


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             9999720018987788999997401210102677740149999999974000144---4114788998997598012899
Q gi|254780964|r  146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRANKMVGIAE  222 (352)
Q Consensus       146 f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~~l~~~g~m~g~~~  222 (352)
                      -..+.++|..+.--+.+.+-..          +    ..-++..++.++++|+++   ++++|.-..  +.+| =.-++.
T Consensus       158 k~~w~~dp~wq~~R~~~e~~~~----------~----~Dw~E~~va~nlv~e~~~~~l~~~~~~~~A--a~nG-D~~t~~  220 (296)
T cd01054         158 KRAWTEDPAWQGARRAFEDDLV----------T----GDWVEALVALNLVFEPLFTNLLFVALDRLA--AANG-DTLTPT  220 (296)
T ss_pred             HHHHHHCHHHHHHHHHHHHHHH----------C----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCC-CHHHHH
T ss_conf             9998508888989999998863----------1----889999999998799634789999999999--9878-855699


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999985666669999999997655375422067899999999999987688688751888
Q gi|254780964|r  223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG  283 (352)
Q Consensus       223 ~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~  283 (352)
                      ++..+..||.+|...+..+++.+.++.|+ ..+.++.++...+..+.+.=...+-.+++-+
T Consensus       221 l~~s~q~D~~Rh~~~~~alvk~~~~~~~~-N~~~lq~w~~~w~~ra~~al~~~~~~~~d~~  280 (296)
T cd01054         221 LTLSAQTDEARHRRWGDALVKTLANDSPD-NRALLQGWLDKWFWRAHAALDAAVGMLSEYG  280 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999989999999999999999818965-6999999999999999999998788886567


No 16 
>pfam02332 Phenol_Hydrox Methane/Phenol/Toluene Hydroxylase. Bacterial phenol hydroxylase is a multicomponent enzyme that catabolizes phenol and some of its methylated derivatives. This Pfam family contains both the P1 and P3 polypeptides of phenol hydroxylase and the alpha and beta chain of methane hydroxylase protein A.
Probab=98.08  E-value=0.00084  Score=45.25  Aligned_cols=160  Identities=19%  Similarity=0.199  Sum_probs=111.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---HH-HHHH
Q ss_conf             8998999999999999986433334556664013305779999999999999977899999999714646---99-9999
Q gi|254780964|r   73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GE-LFNM  148 (352)
Q Consensus        73 ~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~---~e-~f~~  148 (352)
                      .|++.-+.+++..++.+...+-....+. ..+.+..+.+.++.+..+|++.|..|.+--.+.+.-+....   .. -=..
T Consensus        66 ~l~~~w~~~l~~~l~~~~~~E~ga~~~~-a~~~r~~~~~~~~n~~~~~a~DelR~~Q~~~~~~~~l~~~~~~~~~~~k~~  144 (233)
T pfam02332        66 ALDPGWRETLKRHYGPLRYVEYGANMAN-AYIARFAPAPTIRNCATFQALDELRHLQRQAYFLHELAKADPDFDWGQRAY  144 (233)
T ss_pred             CCCHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             4999999999999701218999999989-999986588999999999887999999999999987752288868489998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             9720018987788999997401210102677740149999999974000144---4114788998997598012899999
Q gi|254780964|r  149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRANKMVGIAEQYQ  225 (352)
Q Consensus       149 ~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~---Fys~Fa~~~~l~~~g~m~g~~~~i~  225 (352)
                      +.++|..+.--+++.+...              ...-++..++.++++|+++   ++++|.-   .+..+-=.-+..++.
T Consensus       145 w~~dp~wq~~R~~~E~~~~--------------~~Dw~E~~va~nlv~e~~~~~l~~~~~~~---~A~~~GD~~~~~l~~  207 (233)
T pfam02332       145 WTNDPAWQGLRRLFEDILV--------------TQDWVEAFIALNLVFEPLFTNLVFVALAE---DAAENGDTLTALLTS  207 (233)
T ss_pred             HHHCCHHHHHHHHHHHHHH--------------HCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCHHHHHHHH
T ss_conf             8618337899999998886--------------07899999999888997536899999999---999869903799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9985666669999999997655375
Q gi|254780964|r  226 YIMRDESLHLNFGIDVINQIKIENP  250 (352)
Q Consensus       226 ~I~RDE~lH~~f~~~l~~~l~~E~p  250 (352)
                      .+..||.+|...+..+++.+.++.|
T Consensus       208 s~q~D~~Rh~~~~~alvk~~~~~~p  232 (233)
T pfam02332       208 SIQTDEARHARWGDALVKTALENGP  232 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9998999999999999999985499


No 17 
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A  (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=98.01  E-value=0.0017  Score=43.12  Aligned_cols=229  Identities=16%  Similarity=0.119  Sum_probs=129.2

Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             02689989999999999999864333345566640133057799999999999999778999999997146469999999
Q gi|254780964|r   70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY  149 (352)
Q Consensus        70 t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~  149 (352)
                      ..+++.+.-.++++-.++..+.+|=...+.. ..+.+.++.|+.|.....|+-.|..|++.=.++...+.+... -|++.
T Consensus        67 ~~~~~dpr~~~~~Kl~~~~i~~~EY~A~~~~-a~~~r~~~~~~~Rn~~~~q~lDE~RH~q~q~~~~~~y~k~~~-gf~~~  144 (465)
T cd01057          67 AYEKVDPRWVEAMKLFLGAITPGEYAAVRGM-AMLGRFAPAAELRNGYLMQMLDELRHTQIQLYLPHYYAKNYA-GFDWA  144 (465)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHH
T ss_conf             6544786899999999824888999999999-999873698899999887678888899999989998873087-76679


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             72001898778899999740121010267774014999999997400014441147889989975980128999999985
Q gi|254780964|r  150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR  229 (352)
Q Consensus       150 ~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~R  229 (352)
                      ..   ...++.++.---....+. ...  . +.   +..++.-+...|.++=-..|..+.+-+-.+-=..++..+.-|.-
T Consensus       145 ~~---~~~~~~~~~~~~~~f~d~-~~t--~-d~---~e~~i~l~f~fEt~fTNllFv~~~s~Aa~nGD~~~~t~~~SiQs  214 (465)
T cd01057         145 QK---AFHGNWYAGAAKRFFFDG-FIT--G-DA---VEAALALQFVFETAFTNLLFVALASDAAANGDYATPTVFLSIQS  214 (465)
T ss_pred             HH---HHHCCCHHHHHHHHHHHH-HHC--C-CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             99---860462477668886433-003--6-78---99999878778675101799870888987576375567777312


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCC-HHHHHHHHHHHHHHHHHH
Q ss_conf             66666999999999765537542206789999999999998768868875188847--999-899999999999999997
Q gi|254780964|r  230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV--GLN-APSCEQYMQFIANRRCHQ  306 (352)
Q Consensus       230 DE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~~~--Gl~-~~~~~~yi~y~an~rL~~  306 (352)
                      ||++|...|...+. ++.++|+- .+..++.+...+-.+..+=...+-..++-+..  ..+ +|....||---.-+-+..
T Consensus       215 DEsRH~~~G~~~l~-~l~~d~~n-~~~lQ~~lD~aFWr~~r~~~~lvG~~mDY~tp~R~~S~kE~W~eWI~ed~g~~~~d  292 (465)
T cd01057         215 DEARHMANGYPTLV-LLENDPDN-VPLLQRDLDKAFWRQHRLFDALVGMLMDYGTPKRVMSWKEFWEEWIEEDFGSYFKD  292 (465)
T ss_pred             HHHHHHHCCHHHHH-HHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             27777643788999-99969543-69999999999999999999988777662788776459999999999999999988


Q ss_pred             C---CCCCC
Q ss_conf             8---87988
Q gi|254780964|r  307 I---GLEPL  312 (352)
Q Consensus       307 l---G~~~~  312 (352)
                      |   |+++.
T Consensus       293 L~~yGLk~P  301 (465)
T cd01057         293 LEKYGLKKP  301 (465)
T ss_pred             HHHCCCCCC
T ss_conf             997379998


No 18 
>pfam11583 AurF P-aminobenzoate N-oxygenase AurF. AurF is a metalloenzyme which is involved in the biosynthesis of antibiotic aureothin by catalysing the formation of p-nitrobenzoic acid from p-aminobenzoic acid. AurF is a non-heme di-iron monooxygenase which creates nitroarenes via the sequential oxidation of aminoarenes.
Probab=97.92  E-value=0.0025  Score=42.02  Aligned_cols=214  Identities=15%  Similarity=0.104  Sum_probs=110.0

Q ss_pred             HHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHH-----HHHHHHHHHHHHHH----HHHHHHCCHHCCCHHHHHHHHHH
Q ss_conf             9457987036747989985202689989999999-----99999986433334----55666401330577999999999
Q gi|254780964|r   50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK-----RNLGFFASSESLVA----NNIVLAIYRHLSNPECRQYLLRQ  120 (352)
Q Consensus        50 ~~~fW~peEi~l~~D~~dw~t~~~Lt~~Ek~~~~-----~~l~~~~~~D~~v~----~~~~~~i~~~~~~~E~~~~l~~q  120 (352)
                      ..-+|.|.|..---+-.-|..   |++++|.-+.     ..++.....|+++.    +.+.....+.......+.+..++
T Consensus        38 ~~~~~~ppe~~pl~gtp~~~~---l~~e~r~~l~~~~~~~~~s~~i~~E~~lv~~~~~~l~~~~~~~~~~~~~~~ya~~e  114 (295)
T pfam11583        38 DDRWIYPPERVPLYGTPLWDA---MPEEQRIELLRQELANFLSVGIWFETILVNPVARLLLRGALPVDPPSAHRQYALTE  114 (295)
T ss_pred             CCCCCCCHHHCCCCCCHHHHH---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             886789944375468978885---89999999999999999999999999999999999987503789980899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHH
Q ss_conf             99999778999999997146469999999720018987788999997401210102677740149999999974000144
Q gi|254780964|r  121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW  200 (352)
Q Consensus       121 ~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~  200 (352)
                      ...|+.|+..+...++-+|...-    ..-..+.......-+....   .         ......  ..+++..+.|.+.
T Consensus       115 ~~DE~~H~~mf~~~~~~~g~~~~----~~p~~~~~~r~~~~l~~~~---~---------~~~~~~--~~~~~~lv~Ee~i  176 (295)
T pfam11583       115 IVDECYHALMFQDAIERIGRLTG----PLPPPPRPRRALRALAALL---P---------GWLRGL--VRFAAALVAEEII  176 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC----CCCCCCCHHHHHHHHHHHC---C---------HHHHHH--HHHHHHHHHHHHH
T ss_conf             99999899999999999876403----5788675468999998744---2---------233308--9999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             41147889989975980128999999985666669999999997655375422067899999999999987688688751
Q gi|254780964|r  201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM  280 (352)
Q Consensus       201 Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~  280 (352)
                      -  .+. ...+.....-|-...+++.-.+||+.|+.|+...++.....-+.....-+...+-..+...+........+.+
T Consensus       177 d--~~~-~~~~rD~~iqP~~r~v~~iH~~DEaRHi~fare~l~~~~~~l~~~~R~~~~~~l~~~~~~f~~~~~~p~~~~~  253 (295)
T pfam11583       177 D--AYQ-RDVARDERLQPIVRRVMRIHVVDEARHISFAREVLRRRWPRLSPAQRQALALILPVFLRAFLAADINPWVYAL  253 (295)
T ss_pred             H--HHH-HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             9--999-9745577779479999999999999899999999999998689999999999989999999998658089999


Q ss_pred             CCCCCCCCH
Q ss_conf             888479998
Q gi|254780964|r  281 PKGFVGLNA  289 (352)
Q Consensus       281 ~~~~~Gl~~  289 (352)
                        ..+||+.
T Consensus       254 --~~~gl~~  260 (295)
T pfam11583       254 --AGVGLDP  260 (295)
T ss_pred             --HHCCCCH
T ss_conf             --8769985


No 19 
>pfam11266 DUF3066 Protein of unknown function (DUF3066). This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=97.86  E-value=0.0022  Score=42.34  Aligned_cols=202  Identities=16%  Similarity=0.169  Sum_probs=113.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             98999999999999986433334556664013305779999999999999977899999999714646999999972001
Q gi|254780964|r   75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS  154 (352)
Q Consensus        75 t~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~  154 (352)
                      |+.-|+.|.++=+.-.-++...-+|+. .+...  .|+-+-=+.+.+-||+.|.+.|.-+=++|+..++-          
T Consensus         4 s~~YkdAYSRINaIVIeGEqeA~~Nyi-~l~~l--lP~~~dEL~rLakME~rH~kgF~aCgrNL~V~~Dm----------   70 (219)
T pfam11266         4 SETYKDAYSRINAIVIEGEQEAHDNYI-SLAEL--LPDHAEELKRLAKMENRHKKGFQACGKNLSVTPDM----------   70 (219)
T ss_pred             HHHHHHHHHHHCEEEEECHHHHHHHHH-HHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_conf             288899998740155735087898699-99987--84038999999999998876888862378689893----------


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             89877889999974012101026777401499999999740001444114788998-99759801289999999856666
Q gi|254780964|r  155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRDESL  233 (352)
Q Consensus       155 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~-l~~~g~m~g~~~~i~~I~RDE~l  233 (352)
                           .|..++...+... +....  ..-..+..+++.++++|.      ||+--+ .--.=-=|=-.++-.-+.+||..
T Consensus        71 -----~fA~~fF~~Lh~n-Fq~A~--~egkv~TCLlIQaliIE~------FAIaAYniYipVAD~FARkITegVVkDEy~  136 (219)
T pfam11266        71 -----DFAKEFFSPLHGN-FQTAA--AEGKVVTCLLIQALIIEA------FAIAAYNIYIPVADPFARKITEGVVKDEYT  136 (219)
T ss_pred             -----HHHHHHHHHHHHH-HHHHH--HCCCEEEHHHHHHHHHHH------HHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             -----8999999999899-99998--659922229899999999------999987631103667777887767744777


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             69999999997655375422067899999999999987688688751888-4799989999999999999999788798
Q gi|254780964|r  234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEP  311 (352)
Q Consensus       234 H~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~~~~yi~y~an~rL~~lG~~~  311 (352)
                      |..||..-++.-..        .+++++.+--++.+-+--.-.+.+-.+. ++||..+.+.+=---.-...|.+||+..
T Consensus       137 HLN~Ge~WLk~~f~--------~~k~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~Y~eAL~~IGf~~  207 (219)
T pfam11266       137 HLNFGEEWLKANFE--------TSKEELEEANRENLPLVWKMLNQVADDAAVLGMDKEALVEDFMIAYGEALTNIGFTT  207 (219)
T ss_pred             HCCHHHHHHHHHHH--------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             60268999999999--------999999998886163999999999878999778899999999999999999759758


No 20 
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase; InterPro: IPR008434   This family represents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions . This enzyme is believed to utilise a binuclear iron centre and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacteria, which are differentially regulated based on the levels of copper and oxygen , . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.   CRD1 (AcsF) is required for the maintenance of photosystem I and its associated light-harvesting complexes in copper-deficient (-Cu) and oxygen-deficient (-O(2)) Chlamydomonas reinhardtii cells and is localised to the thylakoid membrane. The family also contains the Rhodocyclus gelatinosus (Rhodopseudomonas gelatinosa) AcsF protein .; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=96.60  E-value=0.007  Score=38.91  Aligned_cols=60  Identities=30%  Similarity=0.387  Sum_probs=42.1

Q ss_pred             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01499999999740001444114788998997598012--899999998566666999999999765
Q gi|254780964|r  182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG--IAEQYQYIMRDESLHLNFGIDVINQIK  246 (352)
Q Consensus       182 ~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g--~~~~i~~I~RDE~lH~~f~~~l~~~l~  246 (352)
                      ++.|+.=+ +-|++-|    ||||...-=+.|+++=+.  +++++++-+|||++|..|.-.-++++.
T Consensus        77 k~~FieFL-~~SctaE----FSGflLYkEl~r~~~n~~PVva~lf~lMARDEARHAGFlN~AL~~~~  138 (344)
T TIGR02029        77 KQEFIEFL-ERSCTAE----FSGFLLYKELERRLKNEDPVVAELFQLMARDEARHAGFLNKALKDFG  138 (344)
T ss_pred             HHHHHHHH-HHHHHHH----HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999-9998988----77779999973057898717899976521255566778988888715


No 21 
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=96.05  E-value=0.13  Score=30.21  Aligned_cols=125  Identities=17%  Similarity=0.101  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998643333455666401330577999999999999997789999999971464699999997200189877889999
Q gi|254780964|r   86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY  165 (352)
Q Consensus        86 l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~  165 (352)
                      |..+..++......+ ..+...++.|+++..+..++.+|..|.+....++..++..+...       +..      ....
T Consensus         3 L~~~l~~E~~a~~~Y-~~~a~~~~~~~~~~~~~~~a~eE~~H~~~l~~~~~~l~~~p~~~-------~~~------~~~~   68 (130)
T cd00657           3 LNDALAGEYAAIIAY-GQLAARAPDPDLKDELLEIADEERRHADALAERLRELGGTPPLP-------PAH------LLAA   68 (130)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CHH------HHHH
T ss_conf             889999999999999-99998889977999999999999999999999999808988887-------503------3330


Q ss_pred             HHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             974012101026777401499999999740001--4441147889989975980128999999985666669999999
Q gi|254780964|r  166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG--MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV  241 (352)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEG--i~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l  241 (352)
                      .....       ...+..    .++...+..|.  +-+|..+      ...-.=+.+.+++..|.+||..|...+..+
T Consensus        69 ~~~~~-------~~~~~~----~~l~~~~~~E~~a~~~y~~~------~~~~~d~~~~~~~~~i~~dE~~H~~~~~~~  129 (130)
T cd00657          69 YALPK-------TSDDPA----EALRAALEVEARAIAAYREL------IEQADDPELRRLLERILADEQRHAAWFRKL  129 (130)
T ss_pred             CCCCC-------CCCCHH----HHHHHHHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             00145-------899999----99999999999999999999------987288999999999999999999999966


No 22 
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs.  Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid.  Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=95.96  E-value=0.078  Score=31.75  Aligned_cols=113  Identities=18%  Similarity=0.142  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHH
Q ss_conf             999999999999997789999999971-4646999999972001898778899999740121010267774014999999
Q gi|254780964|r  112 ECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF  190 (352)
Q Consensus       112 E~~~~l~~q~~~E~iH~~sYs~il~~l-~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  190 (352)
                      -...+...|..+|+.|+..-...+-.- ..|+.++-.         .+...+.            .+..++-..-....+
T Consensus        94 ~W~~Wv~~WTAEEnRHg~~Lr~YL~~tr~VDp~~lE~---------~r~~~i~------------~G~~~~~~~~p~~~~  152 (297)
T cd01050          94 AWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALER---------TRQYLIG------------SGFDPGTDNSPYRGF  152 (297)
T ss_pred             CHHHHCCCCCCCCCHHHHHHHHHEEECCCCCHHHHHH---------HHHHHHH------------CCCCCCCCCCHHHHH
T ss_conf             2565206526442403788863100056778299999---------9999983------------788999987789999


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             997400014441147889989975980-----12899999998566666999999999765537542
Q gi|254780964|r  191 VFYVVFEGMWFYTGFAQILSLGRANKM-----VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL  252 (352)
Q Consensus       191 ~~~~~lEGi~Fys~Fa~~~~l~~~g~m-----~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l  252 (352)
                      +|..+-|-       |+.-+-+..|++     |-++++...|+.||.+|..|...++..+.+-+|.-
T Consensus       153 ~YtsfQEl-------AT~IsH~Nt~rla~~gDp~l~~i~~rIA~DE~rH~~fYr~iv~~~le~dPd~  212 (297)
T cd01050         153 VYTSFQEL-------ATRISHRNTARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPDG  212 (297)
T ss_pred             HHHHHHHH-------CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             99999875-------0133362388875059979999998875168899999999999998339367


No 23 
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=95.91  E-value=0.15  Score=29.80  Aligned_cols=224  Identities=15%  Similarity=0.124  Sum_probs=125.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             99899999999999998643333455666401330577999999999999997789999999971464699999997200
Q gi|254780964|r   74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP  153 (352)
Q Consensus        74 Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~  153 (352)
                      |++.-|..+.+.++..+.++. ||--+-.+-+...+.-.-++.+..-...|+=|..---...++||.+.+++++....-+
T Consensus        36 MP~~YR~~L~R~i~qHAhSEI-vG~lpE~~Wi~rAPsL~rK~~llAKVQDE~GHg~~ly~aaEtLG~~Reel~~~l~~g~  114 (316)
T PRK13778         36 MPDAYRKTLIRQISQHAHSEI-VGMLPEGNWITRAPSLKRKAILLAKVQDEAGHGLYLYSAAETLGVSREELIDDLHSGK  114 (316)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf             889999999999999877788-8357454510038757788999999753101699999999980999999999985585


Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             18987788999997401210102677740149999999974000144411478899899759801289999999856666
Q gi|254780964|r  154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL  233 (352)
Q Consensus       154 ~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~l  233 (352)
                      .   |.-.+..               .+-.....-.++. -++.|.-...    --.| .+.-.---+.....|++.|+.
T Consensus       115 ~---KyssiFn---------------ypt~twAD~g~ig-wLvDgAAi~n----Q~~l-~~~SYgPYaRAm~RIckEEsF  170 (316)
T PRK13778        115 A---KYSSIFN---------------YPTLTWADVGVIG-WLVDGAAIMN----QVPL-CRCSYGPYARAMVRICKEESF  170 (316)
T ss_pred             C---CCCCCCC---------------CCCCHHHHHHHHH-HHHHHHHHHH----HHHH-HCCCCHHHHHHHHHHHHHHHH
T ss_conf             1---0220157---------------7641199999999-9850688873----3554-037842699999999988878


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------CCCCCCHHHH-HHHHHH
Q ss_conf             6999999999765537542206789999999999998768868875188--------------8479998999-999999
Q gi|254780964|r  234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK--------------GFVGLNAPSC-EQYMQF  298 (352)
Q Consensus       234 H~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~--------------~~~Gl~~~~~-~~yi~y  298 (352)
                      |..-|-.++..+.+-.         .+-++|+.+|++-=--=+-..|+.              ++-.-|-+++ ..||.-
T Consensus       171 H~RqG~~i~~~la~GT---------~~Qk~M~QdAvnRWW~p~LmmFGPpD~~s~~s~q~m~w~IK~~sNDeLRQ~Fvd~  241 (316)
T PRK13778        171 HQRQGYEILLALAKGT---------PAQKAMVQDALNRWWWPALMMFGPPDADSPHSAQSMAWKIKRFSNDELRQKFVDA  241 (316)
T ss_pred             HHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCEEEEECCCCHHHHHHHHHH
T ss_conf             9870899999998199---------9999999999999899888753889868897113102111247879999999999


Q ss_pred             HHHHHHHHCCCCCC-----CCCC-----CCCHHH--HHHHHCCCCC
Q ss_conf             99999997887988-----9998-----883257--8997178867
Q gi|254780964|r  299 IANRRCHQIGLEPL-----FKYT-----ENPFPW--MSEVIDLKKE  332 (352)
Q Consensus       299 ~an~rL~~lG~~~~-----f~~~-----~nP~~W--~~~~~~~~~~  332 (352)
                       .--.+..||+.-.     |+..     -.|++|  |-..+.+++-
T Consensus       242 -~VPqa~~lGltvPD~~L~~nee~G~~~~~~iDW~ef~~vi~g~Gp  286 (316)
T PRK13778        242 -TVPQAEVLGLTLPDPDLKWNEERGHYDFGEIDWDEFKEVIKGNGP  286 (316)
T ss_pred             -HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf             -878999808757980124565669855789998999999828997


No 24 
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=95.76  E-value=0.17  Score=29.40  Aligned_cols=215  Identities=12%  Similarity=0.087  Sum_probs=141.2

Q ss_pred             HHHHHHHHCCCCCCC--CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHH
Q ss_conf             999999945798703--674798998520268998999999999999986433334556664013305779999999999
Q gi|254780964|r   44 EKYLSACNNHWMPTE--VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA  121 (352)
Q Consensus        44 ~ly~k~~~~fW~peE--i~l~~D~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~  121 (352)
                      .-|-++++.-+.--|  ++.-+.....   ..|++.-+.++...++-+...+-...-+.. .+.......-+..+..+|+
T Consensus        64 ~tY~~~qa~~e~~~~~~~~~~~~~g~~---~~l~~~w~~~l~~~l~p~r~~e~gl~m~~a-~~~~~~~~~~i~~a~~f~a  139 (304)
T cd01058          64 RTYVQMRAEQERYVERLFEFAEKRGLA---EALSPEWREFLARYLGPLRHVEHGLQMANA-YVAQYAPSTTITNAAAFQA  139 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHH
T ss_conf             999998889999999999999977962---007999999999986005399999877788-8984555099999999998


Q ss_pred             HHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             999977899999999714646-----999999972001898778899999740121010267774014999999997400
Q gi|254780964|r  122 FEEAVHSHTFQYIITSLGLDE-----GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF  196 (352)
Q Consensus       122 ~~E~iH~~sYs~il~~l~~~~-----~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l  196 (352)
                      +.+..|++--+++...|..+.     +.-=..+.++|.-+.--+++.+....              ..-.+.+++.++++
T Consensus       140 ~D~Lr~aQ~i~~~~~~L~~~~~~~~~~~~k~~W~~dp~WQ~~R~~vE~~l~~--------------~Dw~E~~vA~nlv~  205 (304)
T cd01058         140 MDKLRIAQDIAYRGLELDGNTPGFDGDAAKEAWEEDPAWQGLRELVEKLLVT--------------YDWGEAFVAQNLVF  205 (304)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH--------------CCHHHHHHHHHHHH
T ss_conf             8886799999999998465689877268999883084013189999999861--------------35599999998879


Q ss_pred             CHHH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             0144---4114788998997598012899999998566666999999999765537542206789999999999998768
Q gi|254780964|r  197 EGMW---FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI  273 (352)
Q Consensus       197 EGi~---Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~  273 (352)
                      |+++   |++.|.-...  .+| =.-+..++.....|...|...+..+++.+.++.|+ ....+..++.+-...+.+.=.
T Consensus       206 d~ll~~L~~~~f~~~a~--~~G-d~~t~~l~~~~~~d~~r~~~w~~alvk~~~~~~~~-Nr~~l~~Wi~~W~~~a~~Al~  281 (304)
T cd01058         206 DPLVGELVRRELDRLAA--SNG-DTLTPLLTEFMLDDAQRHRRWTDALVKTAAEDSPH-NRALLQGWLEKWRPRALAALA  281 (304)
T ss_pred             HHHHHHHHHHHHHHHHH--HCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf             98879999999999999--869-95139999999999999999999999999814856-899999999999999999999


Q ss_pred             HHHHHHCC
Q ss_conf             86887518
Q gi|254780964|r  274 AYAHETMP  281 (352)
Q Consensus       274 ~~~~~~~~  281 (352)
                      .++. +++
T Consensus       282 ~~~~-~~~  288 (304)
T cd01058         282 ALAI-ALS  288 (304)
T ss_pred             HHHH-HHH
T ss_conf             9999-986


No 25 
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=95.69  E-value=0.18  Score=29.21  Aligned_cols=225  Identities=17%  Similarity=0.135  Sum_probs=133.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Q ss_conf             99899999999999998643333455666401330577999999999999997789999999971-46469999999720
Q gi|254780964|r   74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREV  152 (352)
Q Consensus        74 Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l-~~~~~e~f~~~~~~  152 (352)
                      ++++-+..+.+.++.++-.+-+.+.-.. .=....|.-|.+..++.....|.-|..-+-.+.+.| |+..++.+...++-
T Consensus        12 ~p~~~~~tLi~~i~~~ad~elv~~~r~~-eW~~~AP~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~d~la~~r~g   90 (265)
T COG3396          12 MPEAYRRTLIRLISQLADSELVLALREG-EWLGHAPTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGREDDLAYLRDG   90 (265)
T ss_pred             CCHHHHHHHHHHHHHHCCHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             7999999999999983216888724578-631468608999999999899886899999999996698759899998642


Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHH
Q ss_conf             018987788999997401210102677740149999999974000144411478899899-7598012899999998566
Q gi|254780964|r  153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRDE  231 (352)
Q Consensus       153 ~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~-~~g~m~g~~~~i~~I~RDE  231 (352)
                      ..   |-+.+.+    ++..           ...-. ++      --|||-+++++..-. +.--.+-++.+...|++.|
T Consensus        91 ~~---k~n~~~n----~P~~-----------~Wadt-~~------~~fLvD~~~~~~l~~l~~ssy~PlA~~a~k~~kEe  145 (265)
T COG3396          91 RH---KRNSLFN----LPTG-----------DWADT-IV------RGFLVDGAAIYQLEALADSSYGPLARAAQKICKEE  145 (265)
T ss_pred             HH---HHHHHHH----CCCC-----------CHHHH-HH------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             88---8888870----8886-----------58888-78------88788478999899987665367999999999868


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH------HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             6669999999997655375422067899999999999987------6886887518884799989999999999999999
Q gi|254780964|r  232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL------EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH  305 (352)
Q Consensus       232 ~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~------E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~  305 (352)
                      ..|..++...+..+.+..++-- ...++.+-..+..+++.      +.+-.-+  .-|+.-.+.+.+.+=-.-..+..|.
T Consensus       146 ~fHl~~~~~~l~~l~~gT~~~~-~~~Q~AlN~wwp~~lemf~~~~~~~~~~a~--~~gI~~~~n~~Lrq~~i~~~~~~l~  222 (265)
T COG3396         146 EFHLRHGKTWLKRLANGTEESR-QMAQAALNRWWPRALEMFGPSASESELSAA--KWGIKVDPNDELRQAWIKEVNEELR  222 (265)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCHHHHH--HCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999998999999983578899-999999999989999883866443324788--7288779789999999999999999


Q ss_pred             HCCCCCC-----CCC-----CCCCHHHHHHHH
Q ss_conf             7887988-----999-----888325789971
Q gi|254780964|r  306 QIGLEPL-----FKY-----TENPFPWMSEVI  327 (352)
Q Consensus       306 ~lG~~~~-----f~~-----~~nP~~W~~~~~  327 (352)
                      .+|+.-.     ++.     ++.+.+|.+...
T Consensus       223 ~~gltvPd~~l~~n~~~g~h~~~~~~~l~~~q  254 (265)
T COG3396         223 ELGLTVPDPNLHYNGKRGHHTEHLGDWLAEMQ  254 (265)
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             71677786111256545876665043999999


No 26 
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, ferritin-like diiron-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a  heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases.  RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=95.60  E-value=0.028  Score=34.79  Aligned_cols=61  Identities=8%  Similarity=-0.055  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             6789999999999998768868875188847999899999999999999997887988999
Q gi|254780964|r  255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY  315 (352)
Q Consensus       255 ~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~  315 (352)
                      ++..+.+.+.+.++++++.+.+.++.+....|+-..+++.|++|++|+.+++||+-.....
T Consensus       209 p~~~d~~~e~~~el~~~av~~~~~~~~~~~~~~~g~~~~~f~~Y~~~~a~~rLg~i~~~~~  269 (280)
T cd07911         209 DANWDVFEERMNELVPHALGLIDEIFELYDEMPFGLDPDELMQYAVDQFQRRLGYIERARG  269 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             5678999999999999999999999851565566889999999999999987448878529


No 27 
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=95.52  E-value=0.045  Score=33.36  Aligned_cols=211  Identities=18%  Similarity=0.223  Sum_probs=115.9

Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             852026899899999999999998643333455666401330--577999999999999997789999999971464699
Q gi|254780964|r   67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL--SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE  144 (352)
Q Consensus        67 dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~--~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e  144 (352)
                      +|..   |+++.|..+.--|--=..++ --|+-+-.-+.+.+  ++|++..++...+-.|+.|+-.-+..+.-+|..-+ 
T Consensus        70 ~~~~---l~~~~r~~f~dfL~~SctsE-FSG~lLykEl~rr~k~~np~l~e~F~~MaRDEaRHAGFlN~am~df~i~lD-  144 (351)
T PRK13654         70 DWDH---LDPETRKEFIDFLERSCTAE-FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFGLSLD-  144 (351)
T ss_pred             HHHH---CCHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-
T ss_conf             6784---99999999999999876766-012369999998703378189999999864377777789999998195302-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHH-HHCCHHHHHHHHHHHH-HHHHC--CCCCHH
Q ss_conf             9999972001898778899999740121010267774014999999997-4000144411478899-89975--980128
Q gi|254780964|r  145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY-VVFEGMWFYTGFAQIL-SLGRA--NKMVGI  220 (352)
Q Consensus       145 ~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~lEGi~Fys~Fa~~~-~l~~~--g~m~g~  220 (352)
                             -..+.++-.|                +.-.++     -|.|+ .+-|.|- |.-+..+| .|.++  ..+--+
T Consensus       145 -------LgfLtk~k~Y----------------TfF~Pk-----fI~YatYLSEKIG-Y~RYItIyRHLe~hPe~r~~Pi  195 (351)
T PRK13654        145 -------LGFLTKKKKY----------------TFFPPK-----FIFYATYLSEKIG-YWRYITIYRHLEKHPEHRIHPI  195 (351)
T ss_pred             -------HHHHHCCCCE----------------EEECCC-----EEEHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCHH
T ss_conf             -------5766356622----------------664664-----2431448776540-6787799999886921033538


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHH
Q ss_conf             999999985666669999999997655375422067-89999999999998768868875188---84799989999999
Q gi|254780964|r  221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYM  296 (352)
Q Consensus       221 ~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~-~~~~i~~~~~eave~E~~~~~~~~~~---~~~Gl~~~~~~~yi  296 (352)
                      -+=++-=+.||.+|+.+...|++    .+|++.+.. ..=|++=.+..++ . .-|+.+.-..   ..+||++.+....|
T Consensus       196 F~~Fe~WCqDE~RHGd~F~~lmr----a~P~ll~g~~~klW~RFFLlaVf-a-TMylrD~~R~~Fy~aLGlD~~eYD~~V  269 (351)
T PRK13654        196 FKFFENWCQDENRHGDFFALLMR----AQPKLLKGWVNKLWSRFFLLAVF-A-TMYLRDHERPDFYEALGLDAREYDQEV  269 (351)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHHH-H-HHEEECCCCHHHHHHHCCCHHHHHHHH
T ss_conf             99999984231241789999996----29675423778999999999998-8-722211264878998599979987999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99999999978879889998883
Q gi|254780964|r  297 QFIANRRCHQIGLEPLFKYTENP  319 (352)
Q Consensus       297 ~y~an~rL~~lG~~~~f~~~~nP  319 (352)
                      =-..|....++ ++-..++ +||
T Consensus       270 ir~Tne~s~qv-FPvvLdv-d~P  290 (351)
T PRK13654        270 IRKTNETSARV-FPVVLDV-DDP  290 (351)
T ss_pred             HHHHHHHHHHH-CCEEECC-CCH
T ss_conf             99973887864-7853238-886


No 28 
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=95.23  E-value=0.069  Score=32.10  Aligned_cols=209  Identities=17%  Similarity=0.203  Sum_probs=109.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             899899999999999998643333455666401330--577999999999999997789999999971464699999997
Q gi|254780964|r   73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL--SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR  150 (352)
Q Consensus        73 ~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~--~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~  150 (352)
                      .++++.|..+.--|--=..++ --|+.+-.-+.+.+  ++|++..++...+-.|+.|+-.-+..+.-++..-+       
T Consensus        55 ~~~~~~r~~f~dfL~~SctsE-FSG~lLykEl~rr~k~~nP~l~e~f~~MaRDEaRHAGFlN~al~d~~~~lD-------  126 (323)
T cd01047          55 KIDPELRQIFLEFLERSCTSE-FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFNLALD-------  126 (323)
T ss_pred             CCCHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------
T ss_conf             089889999999999876776-012368999998742379079999999865477777678899998495202-------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHC--CCCCHHHHHHHHH
Q ss_conf             20018987788999997401210102677740149999999974000144411478899-89975--9801289999999
Q gi|254780964|r  151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRA--NKMVGIAEQYQYI  227 (352)
Q Consensus       151 ~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~-~l~~~--g~m~g~~~~i~~I  227 (352)
                       -..+.++-.|     .           .-.++-+..+    ...-|.|- |.-+..+| .+.++  ..+--+-+=++-=
T Consensus       127 -LgfLtk~k~Y-----T-----------~F~pkfI~Ya----tYLSEKIG-Y~RYItIyRhLe~~Pe~rf~PiF~~Fe~W  184 (323)
T cd01047         127 -LGFLTKTRKY-----T-----------FFKPKFIFYA----TYLSEKIG-YWRYITIYRHLERNPENQFHPIFKYFENW  184 (323)
T ss_pred             -HHHHCCCCCE-----E-----------EECCCEEEEH----HHHHHHHH-HHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             -4765166732-----6-----------6576045403----46665431-67887999999869110236079989988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHHHHHHHHH
Q ss_conf             85666669999999997655375422067-89999999999998768868875188---847999899999999999999
Q gi|254780964|r  228 MRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRR  303 (352)
Q Consensus       228 ~RDE~lH~~f~~~l~~~l~~E~p~l~~~~-~~~~i~~~~~eave~E~~~~~~~~~~---~~~Gl~~~~~~~yi~y~an~r  303 (352)
                      +.||.+|+.+...|++    .+|++++.. ..=|++=.+..++ . .-|+.+.-..   ..+||++.+....|=-..|..
T Consensus       185 CqDE~RHGd~F~~lmr----a~P~ll~~~~~~lw~RFFllaVf-a-Tmyl~d~~R~~Fy~alGlD~~~yD~~Vir~TNe~  258 (323)
T cd01047         185 CQDENRHGDFFAALLR----AQPHLLNDGKNKLWIRFFLLSVY-A-TMYLNDHQRPDFYEALGLDTTEFDMHVIRETNET  258 (323)
T ss_pred             HCCCHHHHHHHHHHHH----CCHHHHHHHHHHHHHHHHHHHHH-H-HEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             5341241799999996----48655522368999999999998-7-2154104617789986999799729999996187


Q ss_pred             HHHCCCCCCCCCCCCC
Q ss_conf             9978879889998883
Q gi|254780964|r  304 CHQIGLEPLFKYTENP  319 (352)
Q Consensus       304 L~~lG~~~~f~~~~nP  319 (352)
                      ..++ +|-..++ +||
T Consensus       259 s~rv-FPvvLDv-d~P  272 (323)
T cd01047         259 AARV-FPAVLDV-DNP  272 (323)
T ss_pred             HHHH-CCEEEEC-CCH
T ss_conf             7864-8854417-886


No 29 
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=94.99  E-value=0.091  Score=31.28  Aligned_cols=212  Identities=17%  Similarity=0.228  Sum_probs=111.6

Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf             8520268998999999999999986433334556664013305--77999999999999997789999999971464699
Q gi|254780964|r   67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS--NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE  144 (352)
Q Consensus        67 dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~--~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e  144 (352)
                      +|..   |+++-|..+.--|--=..++ --|+.+-.-+.+.+.  +|.+..++...+-.|+.|+-.-+..+.-++..-+ 
T Consensus        66 ~~~~---l~~~~r~~FidfL~~SctsE-FSG~lLykEl~rr~k~~nP~l~e~f~~MaRDEaRHAGFlNkam~df~~~lD-  140 (349)
T CHL00185         66 SWSN---LDEKTKQLFIEFLERSCTAE-FSGFLLYKELSRKLKDRNPLLAECFLLMSRDEARHAGFLNKAMADFNLSLD-  140 (349)
T ss_pred             HHHH---CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-
T ss_conf             6773---99999999999999876776-012369999998713379079999999876577787889999998495202-


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHHC--CCCCHHH
Q ss_conf             99999720018987788999997401210102677740149999999974000144411478899-89975--9801289
Q gi|254780964|r  145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRA--NKMVGIA  221 (352)
Q Consensus       145 ~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~-~l~~~--g~m~g~~  221 (352)
                             -..+.+.-.|                +.-.++=+..+    ..+-|.|- |.-+..+| .|.++  ..+--+-
T Consensus       141 -------LgfLtk~k~Y----------------TfF~PkfI~Ya----tYLSEKIG-Y~RYItIyRhLe~~Pe~r~~PiF  192 (349)
T CHL00185        141 -------LGFLTKSRKY----------------TFFAPKFIFYA----TYLSEKIG-YWRYITIYRHLEKHPEHRIYPIF  192 (349)
T ss_pred             -------HHHHCCCCCE----------------EEECCCEEEHH----HHHHHHHH-HHHHHHHHHHHHHCCCCCCCHHH
T ss_conf             -------4765056612----------------65464401135----58776542-67887999998869100226389


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCHHHHHHHHH
Q ss_conf             99999985666669999999997655375422067-89999999999998768868875188---847999899999999
Q gi|254780964|r  222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQ  297 (352)
Q Consensus       222 ~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~-~~~~i~~~~~eave~E~~~~~~~~~~---~~~Gl~~~~~~~yi~  297 (352)
                      +-++-=+.||.+|+.+...+++    .+|++++.. ..=|++=.+..++.  .-|+.+.-..   ..+||++.+....|=
T Consensus       193 ~~Fe~WCqDE~rHGd~F~~lmr----s~P~ll~g~~~~lw~rFFllaVfa--Tmy~~d~~R~~fy~alGld~~~yD~~Vi  266 (349)
T CHL00185        193 KFFENWCQDENRHGDFFAALLK----SQPHLLNGWKSKLWCRFFLLSVFA--TMYLNDFQRIDFYAAIGLDARQYDMQVI  266 (349)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH----CCHHHHHCHHHHHHHHHHHHHHHH--HEEEECCCCHHHHHHHCCCHHHHHHHHH
T ss_conf             9999984330240799999996----496655054689999999999987--4043103608799986999789709999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             9999999978879889998883
Q gi|254780964|r  298 FIANRRCHQIGLEPLFKYTENP  319 (352)
Q Consensus       298 y~an~rL~~lG~~~~f~~~~nP  319 (352)
                      -..|....++ ++-..++ .||
T Consensus       267 ~~Tne~s~rv-FP~~Ldv-d~P  286 (349)
T CHL00185        267 RKTNESAARL-FPVVLDV-DNP  286 (349)
T ss_pred             HHHHHHHHHH-CCEEECC-CCH
T ss_conf             9961877864-7852348-985


No 30 
>pfam04305 DUF455 Protein of unknown function (DUF455).
Probab=92.79  E-value=0.76  Score=24.94  Aligned_cols=102  Identities=23%  Similarity=0.226  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHH
Q ss_conf             999999997789999999971464699------99999720018987788999997401210102677740149999999
Q gi|254780964|r  118 LRQAFEEAVHSHTFQYIITSLGLDEGE------LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV  191 (352)
Q Consensus       118 ~~q~~~E~iH~~sYs~il~~l~~~~~e------~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  191 (352)
                      ..-+.+|+.|-..++.-+..+|..-..      +.++..++.                             ...+.++.+
T Consensus       102 ~~VA~dEa~Hf~ll~~rL~~lG~~YGd~PaH~gLW~~a~~T~-----------------------------~dllaRmAi  152 (250)
T pfam04305       102 LKVADDEAKHFRLLRERLEELGSEYGDLPAHDGLWEAAEKTA-----------------------------DDLLARLAL  152 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH-----------------------------CCHHHHHHH
T ss_conf             999999999999999999982987579710049999999853-----------------------------389999988


Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9740001444114788998997598012899999998566666999999999765537
Q gi|254780964|r  192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN  249 (352)
Q Consensus       192 ~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~  249 (352)
                      -..++|+=-+=++=.++--|.+.|- ..++.+.+-|.+||.-|+.+|..=|+.++.+.
T Consensus       153 vp~vlEArGLD~tp~~~~kl~~~gD-~~sa~iL~~I~~dEI~HVa~G~rWF~~~c~~~  209 (250)
T pfam04305       153 VPRVLEARGLDATPGIIAKLEGAGD-NESAAILEVILRDEIGHVAIGNRWFRFLCERR  209 (250)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             6888886067667899999997798-67899999999998889998799999999874


No 31 
>pfam03405 FA_desaturase_2 Fatty acid desaturase.
Probab=85.89  E-value=2.6  Score=21.33  Aligned_cols=109  Identities=17%  Similarity=0.191  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHH
Q ss_conf             99999999999997789999999971-46469999999720018987788999997401210102677740149999999
Q gi|254780964|r  113 CRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV  191 (352)
Q Consensus       113 ~~~~l~~q~~~E~iH~~sYs~il~~l-~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  191 (352)
                      ...+...|..+|+.|...-+..+-.- ..|+.++-.         .+..    .+..    .+..++...  . .+ -++
T Consensus       100 W~~Wv~~WTAEEnRHg~~Lr~YL~ltr~VD~~~lE~---------~~~~----~i~~----G~~p~~~~~--p-y~-~~v  158 (330)
T pfam03405       100 WAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEK---------TIQY----LIGS----GMDPGTENN--P-YL-GFI  158 (330)
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHH---------HHHH----HHHC----CCCCCCCCC--C-HH-HHH
T ss_conf             653217526443414789976555224678599999---------9999----9827----889987668--1-04-330


Q ss_pred             HHHHCCHHHHHHHHH---HHHHHHHCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             974000144411478---8998997598------012899999998566666999999999765537542
Q gi|254780964|r  192 FYVVFEGMWFYTGFA---QILSLGRANK------MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL  252 (352)
Q Consensus       192 ~~~~lEGi~Fys~Fa---~~~~l~~~g~------m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l  252 (352)
                                |.||-   +.-+-+..|+      =|-++++...|+.||.+|..|...++..+.+-+|.-
T Consensus       159 ----------YtSFQElAT~ISH~NTgrla~~~GDp~la~i~~rIAaDE~rH~~fYr~iv~~~~eldPd~  218 (330)
T pfam03405       159 ----------YTSFQERATFISHGNTARLAKEHGDTKLAQICGTIASDEKRHETAYTKIVEKLFELDPDG  218 (330)
T ss_pred             ----------HHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             ----------455788876511411999988729989999998874337789999999999998029328


No 32 
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum.  Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=82.10  E-value=3.7  Score=20.27  Aligned_cols=134  Identities=19%  Similarity=0.144  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999986433---33455666401330577999999999999997789999999971464699999997200189877
Q gi|254780964|r   83 KRNLGFFASSES---LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA  159 (352)
Q Consensus        83 ~~~l~~~~~~D~---~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~  159 (352)
                      ..++..+...|+   .+.+.+.+.+.-.-+.++++..+.-.+.+|.-|-+..+.++.-||.++.-.  .....    ...
T Consensus        16 ~~l~~~~gG~~gElsA~~qYl~q~~~~~~~~~~i~~ll~dIa~eEm~HlE~i~~~I~~Lgg~p~~~--~~~~~----~~~   89 (154)
T cd07908          16 ELLLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYR--SSSSD----KFT   89 (154)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE--EECCC----CCC
T ss_conf             999998489616899999999989707898479999999999999999999999999918998413--03688----777


Q ss_pred             HHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88999997401210102677740149999999974000144411478899899759801289999999856666699999
Q gi|254780964|r  160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI  239 (352)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~  239 (352)
                      -|-..+..          ...+....++.-+.+  =-.++..|...      .+.=.=+++.++++.|+.||..|.+-+.
T Consensus        90 ~wt~~yv~----------~~~~~~~~L~~diaa--E~~A~~~Y~~~------~~~i~D~~vk~~L~~ii~dE~~H~~~F~  151 (154)
T cd07908          90 YWTGKYVN----------YGESIKEMLKLDIAS--EKAAIAKYKRQ------AETIKDPYIRALLNRIILDEKLHIKILE  151 (154)
T ss_pred             CCCCCCCC----------CCCCHHHHHHHHHHH--HHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             48875558----------899999999999999--99999999999------9976888799999999999999999999


Q ss_pred             H
Q ss_conf             9
Q gi|254780964|r  240 D  240 (352)
Q Consensus       240 ~  240 (352)
                      .
T Consensus       152 e  152 (154)
T cd07908         152 E  152 (154)
T ss_pred             H
T ss_conf             7


No 33 
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=81.68  E-value=3.5  Score=20.37  Aligned_cols=129  Identities=16%  Similarity=0.159  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999998643---333455666401330577999999999999997789999999971464699999997200189877
Q gi|254780964|r   83 KRNLGFFASSE---SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA  159 (352)
Q Consensus        83 ~~~l~~~~~~D---~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~  159 (352)
                      ..++..+...+   +.+.+.+.+.+.- -+.|+.+.++...+.+|.-|-+..+.++.-|+.|..              ..
T Consensus        23 ~~l~e~~GG~~GElsa~~qYl~Q~~~~-~~~~~~~dll~dI~teEl~HlEml~t~I~~L~~ds~--------------G~   87 (156)
T cd01051          23 KLLQEQLGGAFGELSAAMQYLFQSFNF-REDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQ--------------GV   87 (156)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------------CC
T ss_conf             999998689724899999999988604-677779999999999999999999999999716889--------------99


Q ss_pred             HHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88999997401210102677740149999999974000144411478899899759801289999999856666699999
Q gi|254780964|r  160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI  239 (352)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~  239 (352)
                      -|-..|.....++              ...+..++..|.- .-....-++   +.=.=||+.++++++..||..|..-..
T Consensus        88 pWt~~yv~~~gdl--------------~~dL~~niaaE~~-Ar~~y~rl~---~~~dDp~v~~~L~fL~~rE~~H~~~f~  149 (156)
T cd01051          88 PWTAAYIQSSGNL--------------VADLRSNIAAESR-ARLTYERLY---EMTDDPGVKDTLSFLLVREIVHQNAFG  149 (156)
T ss_pred             CCCHHHHHCCCCH--------------HHHHHHHHHHHHH-HHHHHHHHH---HHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             8973687068979--------------9999989999999-999999999---854981099999999998899999999


Q ss_pred             HHHHH
Q ss_conf             99997
Q gi|254780964|r  240 DVINQ  244 (352)
Q Consensus       240 ~l~~~  244 (352)
                      .-+..
T Consensus       150 ~ale~  154 (156)
T cd01051         150 KALES  154 (156)
T ss_pred             HHHHH
T ss_conf             99997


No 34 
>pfam05138 PaaA_PaaC Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.
Probab=81.63  E-value=3.8  Score=20.16  Aligned_cols=193  Identities=17%  Similarity=0.125  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999998643333455666401330577999999999999997789999999971---4646999999972001898778
Q gi|254780964|r   84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYREVPSITAKAN  160 (352)
Q Consensus        84 ~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l---~~~~~e~f~~~~~~~~i~~k~~  160 (352)
                      ..+..++-.+-+.+..+. ..+...|.-|....++..+-.|.=|++.+-.+...+   |.+.+++ .-.+ .+.     +
T Consensus         5 ~~ll~laDd~lil~~r~s-eW~g~aP~LEediAl~ni~lD~lGhAr~ly~~a~~l~g~g~~eD~L-a~~R-~~~-----e   76 (248)
T pfam05138         5 RYLLRLADSELILGQRLS-EWCGHAPSLEEDIALANIALDLLGHARLLYSYAEELEGEGRDEDDL-AFLR-DER-----E   76 (248)
T ss_pred             HHHHHHCCHHHHHHCCCC-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHH-HHH-----H
T ss_conf             999997279999725411-3750597088999999998999999999999999852489899999-9774-455-----6


Q ss_pred             HHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999997401210102677740149999999974000144411478899899-759801289999999856666699999
Q gi|254780964|r  161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRDESLHLNFGI  239 (352)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~-~~g~m~g~~~~i~~I~RDE~lH~~f~~  239 (352)
                      |..-..-+.           +...+...++       --+||+.|..+++=+ .+..-+-++.+...|++.|..|...+.
T Consensus        77 frn~~l~E~-----------Pngd~a~tiv-------r~fl~d~~~~~~~~~L~~ss~~~la~ia~K~~kE~~YH~~h~~  138 (248)
T pfam05138        77 FRNLLLFEQ-----------PNGDWADTIV-------RQFLVDAAAILLLEALCRSSDGPLAAIAAKACKEESYHLRHGA  138 (248)
T ss_pred             HHHHHHHHC-----------CCCCHHHHHH-------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             656488857-----------8887999999-------9999999999999998628848999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999765537542206789999999999998768868875188---------8479998999999999999999978879
Q gi|254780964|r  240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK---------GFVGLNAPSCEQYMQFIANRRCHQIGLE  310 (352)
Q Consensus       240 ~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~---------~~~Gl~~~~~~~yi~y~an~rL~~lG~~  310 (352)
                      .-+..+..-     |++..+++.+-+.+    =-.|+..+|+.         +.++.+.+.+.+=-.-.....|...|++
T Consensus       139 ~Wv~rLg~G-----TeEs~~rmq~Ald~----lwp~~~elF~~~~~~~~l~~~g~~~~~~~Lr~~w~~~v~~~l~~a~L~  209 (248)
T pfam05138       139 EWVLRLGDG-----TEESHRRMQDALDR----LWPYTLEMFGPDDADQALAAAGKAPDNDELRQAWLDTVVPVLEEAGLT  209 (248)
T ss_pred             HHHHHHHCC-----CHHHHHHHHHHHHH----HHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999998518-----99999999999999----999987766998679999877886899999999999999999982899


Q ss_pred             C
Q ss_conf             8
Q gi|254780964|r  311 P  311 (352)
Q Consensus       311 ~  311 (352)
                      .
T Consensus       210 ~  210 (248)
T pfam05138       210 L  210 (248)
T ss_pred             C
T ss_conf             9


No 35 
>pfam02915 Rubrerythrin Rubrerythrin. This domain has a ferritin-like fold.
Probab=77.47  E-value=5.1  Score=19.29  Aligned_cols=133  Identities=11%  Similarity=0.033  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999998643333455666401330--577999999999999997789999999971464699999997200189877889
Q gi|254780964|r   85 NLGFFASSESLVANNIVLAIYRHL--SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA  162 (352)
Q Consensus        85 ~l~~~~~~D~~v~~~~~~~i~~~~--~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~  162 (352)
                      +|+.=..+++....-+ ..+....  ..|+++.++...+-+|..|.+....++..+..+.........-.+.        
T Consensus         2 ~L~~Ai~~E~~a~~~Y-~~~A~~a~~~g~~i~~~F~~lA~~E~~Ha~~~~~l~~~~~~~~~~~~~~~~~~~~--------   72 (137)
T pfam02915         2 ILEYAIAGESSARRRY-KELAEKAKGEGPQIAELFEEMAEEERRHAGFLNKLLKDLFPGLEPVILKEHVEYT--------   72 (137)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCC--------
T ss_conf             6999997099999999-9999999784889999999999999999999999987634665630224431111--------


Q ss_pred             HHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999740121010267774014999999997400014441147889989975980128999999985666669999999
Q gi|254780964|r  163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV  241 (352)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l  241 (352)
                         +  ...+.     ..... -+...+.. ...+---.|--|+   .+++.-.-+.....+..++.+|..|......+
T Consensus        73 ---~--~~~~~-----~~~~~-nl~~a~~~-a~~~e~~~y~~y~---~~A~~~~~~~~~~~f~~la~~E~~H~~~f~~l  136 (137)
T pfam02915        73 ---F--FPVAD-----ELTRE-NLKEAIEG-AMLEEKEAYPFYI---EIAEKEGEEEARRLFEDLAEAEKRHEERFRKL  136 (137)
T ss_pred             ---C--CCCCC-----CCHHH-HHHHHHHH-HHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---1--35563-----63663-39999999-9999999999999---99988778899999999999999999999976


No 36 
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=74.28  E-value=6.1  Score=18.74  Aligned_cols=147  Identities=17%  Similarity=0.085  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999864333345566640133057799999999999999778999999997146469999999720018987788
Q gi|254780964|r   82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW  161 (352)
Q Consensus        82 ~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~  161 (352)
                      +..+|+.=..++.---+-+ ..+...+++++++..+...+.+|..|.+.+..++..++.++.......-.      ....
T Consensus        25 ~~e~L~~Ai~~E~eA~~fY-~~lae~~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~------~~~~   97 (176)
T COG1633          25 IEELLAIAIRGELEAIKFY-EELAERIEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGE------IESE   97 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCC------HHHH
T ss_conf             9999999999799999999-99997658776999999999999999999999999866775430221010------1223


Q ss_pred             HHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999740121010267774014999999997400014441147889989975980128999999985666669999999
Q gi|254780964|r  162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV  241 (352)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l  241 (352)
                      +..+.+.+       ............+- ++  +++-.....|+....  ....=.+...++..++.||.-|..+....
T Consensus        98 ~~~~~~~~-------~~~~~~~~~~~~I~-~a--~~~E~~t~~~Y~~~~--~~~~~~~~~~~~~~~a~~E~~H~~~l~~~  165 (176)
T COG1633          98 ILEYLQPG-------KEMEKSVSYLEAIE-AA--MEAEKDTIEFYEELL--DELVNEEAKKLFKTIADDEKGHASGLLSL  165 (176)
T ss_pred             HCCCCCCC-------CCCCCCHHHHHHHH-HH--HHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             22446766-------21346422889999-99--999998999999999--97367889999999999998899999999


Q ss_pred             HHHHHH
Q ss_conf             997655
Q gi|254780964|r  242 INQIKI  247 (352)
Q Consensus       242 ~~~l~~  247 (352)
                      ++.+..
T Consensus       166 ~~~~~~  171 (176)
T COG1633         166 YNRLTS  171 (176)
T ss_pred             HHHHHC
T ss_conf             997741


No 37 
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237   This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=73.82  E-value=3  Score=20.83  Aligned_cols=77  Identities=13%  Similarity=0.303  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHCCCCCCC
Q ss_conf             789999999999998768868875188847999899999999999999997887988999-8883257899717886755
Q gi|254780964|r  256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKKEKN  334 (352)
Q Consensus       256 ~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL~~lG~~~~f~~-~~nP~~W~~~~~~~~~~tn  334 (352)
                      +-+++|-++....-++...=++-++..+   +..    .|=|-+.|+.|+.||++.+=|- .+||++||...++     -
T Consensus        70 eeEkEVedLag~l~~lderGvea~~~Ga---~~S----~YQK~Rid~vCrelGlks~APLW~~dPle~~~~~V~-----e  137 (227)
T TIGR00289        70 EEEKEVEDLAGQLEELDERGVEAVVIGA---IES----EYQKSRIDKVCRELGLKSIAPLWHKDPLEYLLEEVA-----E  137 (227)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEECC---EEC----CHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHH-----C
T ss_conf             6521176662155445530545478853---410----112335778877714100276013481799999862-----3


Q ss_pred             CCCCCCCCCC
Q ss_conf             5766711221
Q gi|254780964|r  335 FFETRVTEYQ  344 (352)
Q Consensus       335 FFe~~~t~Y~  344 (352)
                      -|+.++++=+
T Consensus       138 ~F~v~iv~V~  147 (227)
T TIGR00289       138 KFEVIIVSVS  147 (227)
T ss_pred             CCEEEEEEEE
T ss_conf             3608999998


No 38 
>pfam10118 Metal_hydrol Predicted metal-dependent hydrolase. Members of this family of proteins comprise various bacterial transition metal-dependent hydrolases.
Probab=73.54  E-value=6.4  Score=18.61  Aligned_cols=140  Identities=16%  Similarity=0.199  Sum_probs=80.7

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHH
Q ss_conf             9999999999-986433334556664013305779999999999999977899999999---714646999999972001
Q gi|254780964|r   79 RLMIKRNLGF-FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT---SLGLDEGELFNMYREVPS  154 (352)
Q Consensus        79 k~~~~~~l~~-~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~---~l~~~~~e~f~~~~~~~~  154 (352)
                      ...+.+.|+. |-.+|..-.+.. -...+.+++|+++.=..-++-+|+.|++.=...++   .-|.+.+..         
T Consensus        25 ~T~~~nalS~~fP~GE~fFi~sv-r~~~~~i~Dp~L~~~v~~FIgQEa~H~reH~~~n~~l~~~G~~~~~~---------   94 (251)
T pfam10118        25 ATHFFNALSLLFPAGERFFIDSV-REARPLIKDPKLAEDVRGFIGQEAMHSREHDKYNDALEAHGYDVEPY---------   94 (251)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH---------
T ss_conf             99999998851435549999999-99875389999999999999999999999999999999809990799---------


Q ss_pred             HHHHHHHHH-HHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHH
Q ss_conf             898778899-99974012101026777401499999999740001444114788998997-----598012899999998
Q gi|254780964|r  155 ITAKANWAL-QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-----ANKMVGIAEQYQYIM  228 (352)
Q Consensus       155 i~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~-----~g~m~g~~~~i~~I~  228 (352)
                       .++..+.. .....+           +    ....++.++.+|-+   ++-..-..|..     .|-=|.+..+..|=+
T Consensus        95 -~~~~~~~~~~~~~~~-----------~----~~~~La~taalEH~---TA~la~~~L~~~~~~~~~adp~~~~Lw~WHa  155 (251)
T pfam10118        95 -LEAREWLFLALLGKL-----------P----LREQLAATAALEHF---TAVLADWLLNNPELLRAGADPTMADLWRWHA  155 (251)
T ss_pred             -HHHHHHHHHHHHHCC-----------C----HHHHHHHHHHHHHH---HHHHHHHHHCCHHHHHCCCCHHHHHHHHHHH
T ss_conf             -999999999987358-----------9----99999999999999---9999999964978774359999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             5666669999999997655
Q gi|254780964|r  229 RDESLHLNFGIDVINQIKI  247 (352)
Q Consensus       229 RDE~lH~~f~~~l~~~l~~  247 (352)
                      -.|.=|-..+-.+++.+..
T Consensus       156 ~EE~EHKsVAfDVy~~v~g  174 (251)
T pfam10118       156 AEEVEHKSVAFDVYQAVGG  174 (251)
T ss_pred             HHHHHHHHHHHHHHHHHCC
T ss_conf             9999989999999999748


No 39 
>pfam05067 Mn_catalase Manganese containing catalase. Catalases are important antioxidant metalloenzymes that catalyse disproportionation of hydrogen peroxide, forming dioxygen and water. Two families of catalases are known, one having a heme cofactor, and this family that is a structurally distinct family containing non-heme manganese.
Probab=70.37  E-value=7.5  Score=18.14  Aligned_cols=33  Identities=18%  Similarity=0.141  Sum_probs=28.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             057799999999999999778999999997146
Q gi|254780964|r  108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL  140 (352)
Q Consensus       108 ~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~  140 (352)
                      ++.++.+.++.-.+.+|-=|-+.-+.++.-|..
T Consensus        49 ~r~~~~kdLL~dI~tEEl~HvEmvat~I~~Ll~   81 (272)
T pfam05067        49 TRDKGKKDLLMDIGTEELGHVEMIATMIARLLK   81 (272)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             898058789988778998899999999999816


No 40 
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=51.51  E-value=5.7  Score=18.95  Aligned_cols=107  Identities=15%  Similarity=0.079  Sum_probs=56.0

Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             97400014441147889989975980128999999985666669999999997655375422067899999999999987
Q gi|254780964|r  192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL  271 (352)
Q Consensus       192 ~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~  271 (352)
                      -++++||+.|-.||.-.-.+ ..+     .-++-...+||.+|-.=+..=.+......|.----+.-.+++.+.+..++.
T Consensus       187 ~~lIIEGvHlVPg~i~~~~~-~~n-----~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp~~Ryl~yf~EiR~I~Dyl~~~  260 (299)
T COG2074         187 EDLIIEGVHLVPGLIKEEAL-GNN-----VFMFMLYIADEELHRERFYDRIRYTHASRPGGRYLEYFKEIRTIHDYLVER  260 (299)
T ss_pred             CCEEEEEEEECCCCCCHHHH-CCC-----EEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             53588742115002167661-355-----178999838878999999998888760596567999999999999999998


Q ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             688688751888479998999999999999999
Q gi|254780964|r  272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC  304 (352)
Q Consensus       272 E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL  304 (352)
                      -.++.--++...-+..+...+-++|.-...+.+
T Consensus       261 Are~gVPvI~n~di~etv~~il~~i~~~~~r~~  293 (299)
T COG2074         261 AREHGVPVIENDDIDETVDRILEDIRKRTVRGL  293 (299)
T ss_pred             HHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             886599811253199999999999999988876


No 41 
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=51.20  E-value=16  Score=15.87  Aligned_cols=241  Identities=18%  Similarity=0.265  Sum_probs=128.1

Q ss_pred             CCCHHHHHHHHHHCCCCC------HHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHCC-H--HCCCH
Q ss_conf             367479899852026899------89999999999999-----------------8643333455666401-3--30577
Q gi|254780964|r   58 EVPMQDDLALWKSKNGLT------DDERLMIKRNLGFF-----------------ASSESLVANNIVLAIY-R--HLSNP  111 (352)
Q Consensus        58 Ei~l~~D~~dw~t~~~Lt------~~Ek~~~~~~l~~~-----------------~~~D~~v~~~~~~~i~-~--~~~~~  111 (352)
                      +++=+.|+-.|+.   |+      .++|.+++++=|+.                 |.+|++-.|.-+..|- .  .+.-+
T Consensus       816 ~l~~~~~iF~Wrn---L~Y~v~ik~e~R~iL~~V~GwvkPG~lTALMG~SGAGKTTLLn~La~R~t~GvIT~G~~lVNG~  892 (1466)
T TIGR00956       816 GLSKSEDIFHWRN---LTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITDGDRLVNGR  892 (1466)
T ss_pred             CCCCCCCEEEEEC---CEEEEEECCCCEEECCCCCEEEECCEEEECCCCCCCCHHHHHHHHHCCCCCCEEECCEEEECCC
T ss_conf             5788765457515---4066543047405315753278778576515788763578886443304321770571550884


Q ss_pred             HH-HHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCHHHCCCCCCCHHH
Q ss_conf             99-99999999999--977899999999714646999999972001---8987788999997401210102677740149
Q gi|254780964|r  112 EC-RQYLLRQAFEE--AVHSHTFQYIITSLGLDEGELFNMYREVPS---ITAKANWALQYTQTLSSPSFTTGTKDADQEF  185 (352)
Q Consensus       112 E~-~~~l~~q~~~E--~iH~~sYs~il~~l~~~~~e~f~~~~~~~~---i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (352)
                      .+ ..|--..++-+  -||.+.-. .=      +.-.|.|++..|.   ..+|++|+.+.++.+.-.           .+
T Consensus       893 ~lD~sF~R~iGYvQQQD~Hl~~~T-VR------EaL~FSA~LRqP~~vs~~EK~~YVe~vI~lLEMe-----------~Y  954 (1466)
T TIGR00956       893 PLDSSFQRSIGYVQQQDLHLETST-VR------EALRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-----------SY  954 (1466)
T ss_pred             CCCCCCCCCCCCEEECCEECCCCH-HH------HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCH-----------HH
T ss_conf             557555744132454221224202-88------9999999845985678653246888887664101-----------02


Q ss_pred             HHHHHHHHHHCC-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf             999999974000-14441147889989975980128999999985-------66---6669999999997655375422-
Q gi|254780964|r  186 LQDLFVFYVVFE-GMWFYTGFAQILSLGRANKMVGIAEQYQYIMR-------DE---SLHLNFGIDVINQIKIENPHLW-  253 (352)
Q Consensus       186 ~~~~i~~~~~lE-Gi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~R-------DE---~lH~~f~~~l~~~l~~E~p~l~-  253 (352)
                      +.+++-  +.-| |          |+--.|++   +.=++++++|       ||   +|=.+-+-.+++.+++==.+.. 
T Consensus       955 aDAvVG--~pG~tG----------LNVEQRKR---LTIGVELvAkPkLL~FLDEPTSGLDSQtAWsi~~l~RKLad~GQa 1019 (1466)
T TIGR00956       955 ADAVVG--VPGETG----------LNVEQRKR---LTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLLRKLADHGQA 1019 (1466)
T ss_pred             CCEEEE--CCCCCC----------CCHHHHHH---HHHHHHHHHCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHCCCE
T ss_conf             211351--567788----------87323210---103343221632000215889705589999999999988755983


Q ss_pred             ---C-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             ---0-6789999999999998768868875188847999899999999-9999999978879889998883257899717
Q gi|254780964|r  254 ---T-KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ-FIANRRCHQIGLEPLFKYTENPFPWMSEVID  328 (352)
Q Consensus       254 ---~-~~~~~~i~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~-y~an~rL~~lG~~~~f~~~~nP~~W~~~~~~  328 (352)
                         | .-.-+.+.+-|++.+-|-+. ..-++ -|.+|=+...|.+|=+ -.        |-++.=+ +.||-.||-+.++
T Consensus      1020 ILCTIHQPSA~L~~eFDrLLlLqkG-G~TvY-FGdlG~n~~T~inYFEa~h--------GA~kCp~-~~NPAEwmLeViG 1088 (1466)
T TIGR00956      1020 ILCTIHQPSAILFEEFDRLLLLQKG-GQTVY-FGDLGENSKTLINYFEAKH--------GAPKCPE-DANPAEWMLEVIG 1088 (1466)
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHCC-CEEEE-ECCCCHHHHHHHHHHHHHC--------CCCCCCC-CCCCHHHHHHHHC
T ss_conf             8860430248999986289775428-80687-2751313589998886653--------7889858-8763455877744


Q ss_pred             CCC----CCCCCCC--CCCCCCC
Q ss_conf             886----7555766--7112210
Q gi|254780964|r  329 LKK----EKNFFET--RVTEYQQ  345 (352)
Q Consensus       329 ~~~----~tnFFe~--~~t~Y~k  345 (352)
                      +.-    +-||||.  .+.+|+.
T Consensus      1089 AApga~~~~Dy~E~W~nS~ey~~ 1111 (1466)
T TIGR00956      1089 AAPGAKANQDYHEVWRNSSEYQA 1111 (1466)
T ss_pred             CCCCCCCCCHHHHHHCCCHHHHH
T ss_conf             68777633006756258388999


No 42 
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.17  E-value=18  Score=15.56  Aligned_cols=80  Identities=10%  Similarity=0.142  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHHHHHHHH
Q ss_conf             99999985666669999999997655375422067---899999999999987688688751888--4799989999999
Q gi|254780964|r  222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE---FQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYM  296 (352)
Q Consensus       222 ~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~---~~~~i~~~~~eave~E~~~~~~~~~~~--~~Gl~~~~~~~yi  296 (352)
                      .+++-|+.-|..|......|+...--..|.-.+..   ...+..++..+.|+.-..-..+++..|  +..++..+++.++
T Consensus        78 ~IF~nIA~SEQ~HmDAVk~LlekYnv~dP~~~~siGvF~NpelqeLYn~Lve~Gs~S~vDALKVGa~IEe~DI~DLE~wl  157 (189)
T COG4902          78 PIFRNIAASEQEHMDAVKSLLEKYNVQDPASTTSIGVFTNPELQELYNQLVEQGSVSRVDALKVGAIIEEKDIRDLEAWL  157 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHCCHHHHHHHH
T ss_conf             88888888688889999999998099998766743004688899999999983653567677750102033377899998


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780964|r  297 QFIAN  301 (352)
Q Consensus       297 ~y~an  301 (352)
                      --.-|
T Consensus       158 ~ktdN  162 (189)
T COG4902         158 AKTDN  162 (189)
T ss_pred             HHCCC
T ss_conf             51775


No 43 
>pfam11251 DUF3050 Protein of unknown function (DUF3050). This bacterial family of proteins has no known function.
Probab=47.89  E-value=18  Score=15.53  Aligned_cols=171  Identities=16%  Similarity=0.239  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHCC--CHHHHHHHHHHHHHH-H-H--------HHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             99999986433334556664013305--779999999999999-9-7--------7899999999714646999999972
Q gi|254780964|r   84 RNLGFFASSESLVANNIVLAIYRHLS--NPECRQYLLRQAFEE-A-V--------HSHTFQYIITSLGLDEGELFNMYRE  151 (352)
Q Consensus        84 ~~l~~~~~~D~~v~~~~~~~i~~~~~--~~E~~~~l~~q~~~E-~-i--------H~~sYs~il~~l~~~~~e~f~~~~~  151 (352)
                      -+--|-+.+-++| ..+++.=.||+|  +|+++-+.+-....| + +        |=+.|-.-++.+|-+...+-..+..
T Consensus        27 AVWDFMSLlK~LQ-~~ltc~~~PW~P~~~~~~~RlINEIVl~EESD~~~~g~~~SHFElYl~AM~e~GA~t~~I~~fi~~  105 (232)
T pfam11251        27 AVWDFMSLLKALQ-QQLTCTTVPWVPPGNPELRRLINEIVLAEESDENLDGEHQSHFELYLDAMREVGADTSKIEAFLKL  105 (232)
T ss_pred             HHHHHHHHHHHHH-HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             8716989999999-853378888789998159999999986530365779881149999999999938991789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHH-----------
Q ss_conf             001898778899999740121010267774014999999997400014441147889989975980128-----------
Q gi|254780964|r  152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI-----------  220 (352)
Q Consensus       152 ~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~l~~~g~m~g~-----------  220 (352)
                      ..   .- ..+..-.+       ........+.|+...  |.++-.|-.-  --|..|.|+|....|.+           
T Consensus       106 l~---~g-~~~~~al~-------~~~~p~~~~~Fv~~T--f~~i~~~~~H--~iAaaFtfGREdlIPdMF~~Il~~l~~~  170 (232)
T pfam11251       106 VQ---SG-TSVFEALA-------QADLPEPAARFLRFT--FELIESGKPH--EIAAAFTFGREDLIPDMFRAILDELNIP  170 (232)
T ss_pred             HH---CC-CCHHHHHH-------HCCCCHHHHHHHHHH--HHHHHCCCHH--HHHHHHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf             87---58-99999987-------648998999999988--9999779867--8998887156443499999999973378


Q ss_pred             ----HHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ----9999----999856666699999999976553754220678999999999999876886
Q gi|254780964|r  221 ----AEQY----QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY  275 (352)
Q Consensus       221 ----~~~i----~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~  275 (352)
                          ...+    +.|--|+..|+..+..++..++.+++..|     +++.+...+|++.-+++
T Consensus       171 ~~~~~~f~yYL~RHIElDgd~HGPlA~kml~~LCg~D~~kw-----~EA~~aa~~AL~~Ri~l  228 (232)
T pfam11251       171 ETQLPTFRYYLERHIELDGDEHGPLALQMLAELCGDDPQKW-----QEVEQAAIQALEARIAL  228 (232)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHH-----HHHHHHHHHHHHHHHHH
T ss_conf             64328999999998326776565899999999978899999-----99999999999999986


No 44 
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254; InterPro: IPR011951    This family consists of uncharacterised proteobacterial and Gram-positive bacterial sequences including YjjG from Escherichia coli and YfnB from Bacillus subtilis..
Probab=47.82  E-value=18  Score=15.58  Aligned_cols=81  Identities=20%  Similarity=0.235  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC--CCCCHH---HHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHH
Q ss_conf             9985666669999999997655375--422067---89999999999998768868875-18884799989999999999
Q gi|254780964|r  226 YIMRDESLHLNFGIDVINQIKIENP--HLWTKE---FQQKSRTMLHEATLLEIAYAHET-MPKGFVGLNAPSCEQYMQFI  299 (352)
Q Consensus       226 ~I~RDE~lH~~f~~~l~~~l~~E~p--~l~~~~---~~~~i~~~~~eave~E~~~~~~~-~~~~~~Gl~~~~~~~yi~y~  299 (352)
                      -|.||+-.|.+|...+-......+|  ..++++   +-++...++.-|.|+ ++..+.- +..+++       .+=++.+
T Consensus        61 ~i~~~~l~~~RF~~~~~~l~~~~D~qi~~l~~~yl~~l~~~~~L~pGA~el-~~~L~~~d~~l~iv-------tNG~~~~  132 (233)
T TIGR02254        61 KITKDELVLTRFEELLKELNTEADEQILKLNKEYLEFLEEKARLLPGALEL-MEALQKKDLRLYIV-------TNGVREV  132 (233)
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH-HHHHCCCCCEEEEE-------ECCHHHH
T ss_conf             866788989999999987077677889999999999987320237007999-99870077137888-------7770667


Q ss_pred             HHHHHHHCCCCCCCC
Q ss_conf             999999788798899
Q gi|254780964|r  300 ANRRCHQIGLEPLFK  314 (352)
Q Consensus       300 an~rL~~lG~~~~f~  314 (352)
                      =.+||...|+.|.|+
T Consensus       133 Q~~rl~~~gL~~Ff~  147 (233)
T TIGR02254       133 QEKRLRKSGLAPFFD  147 (233)
T ss_pred             HHHHHHHCCCCHHHH
T ss_conf             778876347721051


No 45 
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=47.19  E-value=18  Score=15.46  Aligned_cols=31  Identities=19%  Similarity=0.255  Sum_probs=26.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             7799999999999999778999999997146
Q gi|254780964|r  110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL  140 (352)
Q Consensus       110 ~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~  140 (352)
                      .+-.+.++.-.+.+|-=|-+.-+.++..|..
T Consensus        51 ~~~~~dll~DI~TEEl~HlEmvat~I~~L~~   81 (277)
T COG3546          51 DAKYKDLLMDIGTEELSHLEMVATMINLLNK   81 (277)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             5379999998647888899999999999956


No 46 
>PTZ00301 uridine kinase; Provisional
Probab=44.15  E-value=18  Score=15.53  Aligned_cols=95  Identities=12%  Similarity=0.150  Sum_probs=53.2

Q ss_pred             HHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             400014441147889989975980128999999-9856666699999999976553--7542206789999999999998
Q gi|254780964|r  194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY-IMRDESLHLNFGIDVINQIKIE--NPHLWTKEFQQKSRTMLHEATL  270 (352)
Q Consensus       194 ~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~-I~RDE~lH~~f~~~l~~~l~~E--~p~l~~~~~~~~i~~~~~eave  270 (352)
                      +++||++-+.-             +.+.+.+++ |--|-.....+...+.|.+.+=  .++-.-+...+.++-++++.++
T Consensus       110 IIvEGi~~l~~-------------~~lr~l~DlkIFvd~~~dirl~RRi~RDv~eRGr~~e~Vi~qy~~~V~P~~~~fI~  176 (210)
T PTZ00301        110 LIVEGILLFTN-------------AELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVE  176 (210)
T ss_pred             EEEEEEHHCCC-------------HHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCC
T ss_conf             99971043078-------------98997742457734872378899888778875889999999999662305887680


Q ss_pred             HHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHH
Q ss_conf             7688688751888479-998999999999999
Q gi|254780964|r  271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIAN  301 (352)
Q Consensus       271 ~E~~~~~~~~~~~~~G-l~~~~~~~yi~y~an  301 (352)
                      =-+.|++-+.|.|... ...+.+.+.|++..+
T Consensus       177 P~k~~ADiIIp~~~~n~va~~~i~~~i~~~l~  208 (210)
T PTZ00301        177 PSKVYADIIVPSWKDNSVAVGVLRAKLNHDLE  208 (210)
T ss_pred             HHHHCCCEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             51633618978999863199999999999985


No 47 
>pfam09968 DUF2202 Uncharacterized protein domain (DUF2202). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=43.87  E-value=21  Score=15.12  Aligned_cols=81  Identities=14%  Similarity=0.168  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--H-HHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCHHHHHHH
Q ss_conf             99999998566666999999999765537542206--7-899999999999987688688751888--479998999999
Q gi|254780964|r  221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK--E-FQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQY  295 (352)
Q Consensus       221 ~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~--~-~~~~i~~~~~eave~E~~~~~~~~~~~--~~Gl~~~~~~~y  295 (352)
                      ..++.-|+|-|..|......|+...--++|-.-+.  . ....+.++....++.=..-...++..|  +..++..|+..+
T Consensus        28 ~~iF~NIa~SEq~HmdaV~~Ll~~Y~l~dP~~~~~~G~F~npelQ~LYn~L~~~G~~S~~dAL~VGa~IEelDI~DL~~~  107 (162)
T pfam09968        28 LPVFLNIARSEQTHMDAVKSLLDKYGLEDPILSETVGVFTNPDLQELYNQLVEKGSKSLEDALKVGATIEDLDIYDLEEA  107 (162)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH
T ss_conf             38888999989999999999999839999987786785288779999999999733528999983820222569999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780964|r  296 MQFIAN  301 (352)
Q Consensus       296 i~y~an  301 (352)
                      +.-.-|
T Consensus       108 i~~t~n  113 (162)
T pfam09968       108 IAETDN  113 (162)
T ss_pred             HHHCCH
T ss_conf             985080


No 48 
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=42.16  E-value=22  Score=14.95  Aligned_cols=36  Identities=17%  Similarity=0.145  Sum_probs=17.1

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8899899759801289999999856666699999999
Q gi|254780964|r  206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI  242 (352)
Q Consensus       206 a~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~  242 (352)
                      ++-.||.+.| ++|++.=+.--+..|.-|..-....+
T Consensus        24 ~ma~~~~~~~-l~g~a~ff~~~a~EEr~HA~kl~~yl   59 (156)
T cd01055          24 AMAAWFDSKG-LDGFANFFRVQAQEEREHAMKFFDYL   59 (156)
T ss_pred             HHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999972668-76899999999999999999999999


No 49 
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.09  E-value=23  Score=14.84  Aligned_cols=106  Identities=21%  Similarity=0.191  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHH
Q ss_conf             99999977899999999714646999999972001898778899999740121010267774014999999997400014
Q gi|254780964|r  120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM  199 (352)
Q Consensus       120 q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi  199 (352)
                      -+.+|+.|=+--+.-+.+||-+-.+ |.+...--.+..+                      .......++.+---+||.=
T Consensus       115 VA~EE~~HF~Ll~~~L~~LG~~YGD-fpaHdgLw~~a~~----------------------T~~dl~~RmalVprvLEAR  171 (268)
T COG2833         115 VADEEAKHFRLLRERLKSLGYDYGD-FPAHDGLWQMAEA----------------------TANDLLARMALVPRVLEAR  171 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHH----------------------HHCCHHHHHHHHHHHHHHC
T ss_conf             9999989999999999981887578-8130518999987----------------------6408898865446677642


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             44114788998997598012899999998566666999999999765537
Q gi|254780964|r  200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN  249 (352)
Q Consensus       200 ~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~  249 (352)
                      -+=+.=...--++.+|-+.. +.+.+-|.|||.-|+..|..-++-+++..
T Consensus       172 GLDatP~l~aK~~~~gD~~~-~~iLdIIlrDEigHVaiGn~Wyrflc~r~  220 (268)
T COG2833         172 GLDATPSLRAKLAETGDSEA-AAILDIILRDEIGHVAIGNKWYRFLCARR  220 (268)
T ss_pred             CCCCCHHHHHHHHHCCCHHH-HHHHHHHHHCCCCCEEECHHHHHHHHHHC
T ss_conf             67788789999987386488-88999997312342222559999998743


No 50 
>PRK08233 hypothetical protein; Provisional
Probab=36.81  E-value=26  Score=14.40  Aligned_cols=93  Identities=13%  Similarity=0.134  Sum_probs=61.5

Q ss_pred             HHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHHHHHH
Q ss_conf             400014441147889989975980128999999-9856666699999999976553754-2--20678999999999999
Q gi|254780964|r  194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY-IMRDESLHLNFGIDVINQIKIENPH-L--WTKEFQQKSRTMLHEAT  269 (352)
Q Consensus       194 ~~lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~-I~RDE~lH~~f~~~l~~~l~~E~p~-l--~~~~~~~~i~~~~~eav  269 (352)
                      +++||++.+             ..+.+.+.+++ |--|--....+...+.|.+.+.... +  +-+-..+.++-|+.+.+
T Consensus        81 iIvEgil~l-------------~~~~lr~l~D~kIfVdtp~Dirl~RRi~RDi~Er~gr~i~svl~qY~~~VrPm~~~fv  147 (182)
T PRK08233         81 IIVDYPFAY-------------LNSEMRQYIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEAL  147 (182)
T ss_pred             EEEEEEHHH-------------CCHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             999644362-------------6898997718789972868999999888887776188789999999998788999985


Q ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             876886887518884799989999999999999
Q gi|254780964|r  270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR  302 (352)
Q Consensus       270 e~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~  302 (352)
                      +--+.+++.+.+..   +..+.+.+-|+....+
T Consensus       148 ePsk~~ADiIId~~---~aid~i~~~i~~~l~~  177 (182)
T PRK08233        148 DTVKPNADIVLDGA---LSVEEIINQIEEELYR  177 (182)
T ss_pred             CHHHHCCCEEEECC---CCHHHHHHHHHHHHHH
T ss_conf             70032196898586---0799999999999974


No 51 
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea.  These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport.  This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=36.50  E-value=26  Score=14.37  Aligned_cols=40  Identities=23%  Similarity=0.366  Sum_probs=32.9

Q ss_pred             HHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             6401330577999999999999997789999999971464
Q gi|254780964|r  102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD  141 (352)
Q Consensus       102 ~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~  141 (352)
                      ..+....++|+.+-.+...+-+|..|++....++..-+.+
T Consensus        18 ~~LA~~ekd~~~reil~~lA~~E~~Ha~~W~~~l~~~~~~   57 (125)
T cd01044          18 RKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVP   57 (125)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999764798999999999999999999999998865788


No 52 
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB).  This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown.  This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium.  Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=32.45  E-value=31  Score=13.93  Aligned_cols=38  Identities=21%  Similarity=0.275  Sum_probs=33.6

Q ss_pred             HHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             64013305779999999999999977899999999714
Q gi|254780964|r  102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG  139 (352)
Q Consensus       102 ~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~  139 (352)
                      ..+...+++|+++.++...+-+|..|.+....+...+.
T Consensus        18 ~~~a~~~~~~~~k~~f~~LA~eE~~H~~~l~~l~~~~~   55 (139)
T cd01045          18 LELAEKAKDPELKKLFEELAEEEKEHAERLEELYEKLF   55 (139)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99998779889999999999999999999999986513


No 53 
>KOG1883 consensus
Probab=32.42  E-value=31  Score=13.93  Aligned_cols=94  Identities=13%  Similarity=0.074  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99999999997789999999971464699999997200189877889999974012101026777401499999999740
Q gi|254780964|r  116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV  195 (352)
Q Consensus       116 ~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  195 (352)
                      ++..+..-|+|.+..| .+++-++  ++|+-.      .+..-.+|+.-          ...+....+.++.+++.... 
T Consensus       853 ~~~m~~~teNIns~~y-rVLe~is--prelva------~~~tlvDyLva----------d~~t~~~~e~~l~k~~~~la-  912 (1517)
T KOG1883         853 AYKMVDETENINSEFY-RVLEKIS--PRELVA------HGRTLVDYLVA----------DAKTSDCGEKTLKKCAKALA-  912 (1517)
T ss_pred             HHHHCCCCCCCCHHHH-HHHHHCC--HHHHHH------HHHHHHHHHHH----------HHHCCCCHHHHHHHHHHHHH-
T ss_conf             9985031301478999-9998419--999999------98888888654----------43316425999999999999-


Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----HHHHHHHHHHHHH
Q ss_conf             0014441147889989975980128999999985----6666699999999
Q gi|254780964|r  196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR----DESLHLNFGIDVI  242 (352)
Q Consensus       196 lEGi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I~R----DE~lH~~f~~~l~  242 (352)
                                   +.+.+.+.++-=.-+.-+|.|    ||..|+-+.+.++
T Consensus       913 -------------~mvwkf~vl~lDrllL~Limr~~~~nda~vc~~Ia~~l  950 (1517)
T KOG1883         913 -------------LMVWKFNVLTLDRLLLCLIMRPHEGNDAQVCIQIAQLL  950 (1517)
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             -------------88786501028889999953656687434199999999


No 54 
>TIGR00988 hip integration host factor, beta subunit; InterPro: IPR005685   Integration host factor (IHF) is a heterodimeric protein consisting of alpha (IPR005684 from INTERPRO) and beta subunits. IHF binds the minor groove of DNA in a sequence-specific manner to induce a large bend. This bending stabilises distinct DNA conformations that are required during several bacterial processes, such as recombination, transposition, replication and transcription .; GO: 0003677 DNA binding, 0005694 chromosome.
Probab=32.08  E-value=31  Score=13.89  Aligned_cols=33  Identities=30%  Similarity=0.516  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999997655375422067899999999999987
Q gi|254780964|r  239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLL  271 (352)
Q Consensus       239 ~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~  271 (352)
                      ..||..+..++|++..+..+..|..|+++..+.
T Consensus         4 SELI~~i~~~~~~l~~k~VE~~v~~~lE~~~~a   36 (94)
T TIGR00988         4 SELIERIATEQSHLFAKDVEKAVKTMLEEMIEA   36 (94)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             788899874078755333899999999999998


No 55 
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B; InterPro: IPR014140   DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in others. AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. This entry describes the ATP-dependent nuclease subunit B (AddB/RexB) protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous and functionally equivalent, merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function..
Probab=31.07  E-value=32  Score=13.78  Aligned_cols=157  Identities=16%  Similarity=0.166  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHCC-------C-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHC--
Q ss_conf             999999997146-------4-6--999999972001898778899999740121010267774014999999997400--
Q gi|254780964|r  129 HTFQYIITSLGL-------D-E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF--  196 (352)
Q Consensus       129 ~sYs~il~~l~~-------~-~--~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l--  196 (352)
                      .|-+.+..+|-+       . +  -++|+++.+.+....+.+.+..      ...+......     +.+..+..+.-  
T Consensus       728 ~t~~~l~~~L~~w~~~~~~~~~vW~~vY~~y~~~~~~~~~~~~vl~------gL~Y~N~~~~-----l~~~~~~~LYgdn  796 (1192)
T TIGR02773       728 PTLSELTSQLKKWKRGYPISDDVWWDVYQWYREEDKWKKKLEYVLS------GLVYDNKTKK-----LQKEKAKKLYGDN  796 (1192)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH------CCEEECCCCC-----CCHHHHHHCCCCC
T ss_conf             6789999999984315676651258778886207822122888860------5222166442-----7978997316744


Q ss_pred             -CHHHHHHH-----HHHHH-HHHHCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             -01444114-----78899-899759801289999999856--6666999999999765537542206789999999999
Q gi|254780964|r  197 -EGMWFYTG-----FAQIL-SLGRANKMVGIAEQYQYIMRD--ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE  267 (352)
Q Consensus       197 -EGi~Fys~-----Fa~~~-~l~~~g~m~g~~~~i~~I~RD--E~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~e  267 (352)
                       |.|.+++|     ++|+| +|+.+|+=-.=.+..++-+=|  +-.|.. --.+-..+..|. --|..-.++++..+...
T Consensus       797 k~~I~~SVSRlE~Y~~CpF~hfa~yGLkl~ER~~Y~L~apDlG~~fH~~-L~~Is~~l~~e~-Ldw~~L~k~~c~~~~~~  874 (1192)
T TIGR02773       797 KERIQASVSRLEKYNACPFAHFAQYGLKLKERKIYKLEAPDLGQLFHEA-LKEISDELKEEE-LDWSDLTKEQCRALANE  874 (1192)
T ss_pred             CCEEEEEEECCHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHHHHHHHCC-CCCCCCCHHHHHHHHHH
T ss_conf             1147234401000017832556502532002552567996367899999-999999996237-87011476899999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9987688688751888479998999999999999999
Q gi|254780964|r  268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC  304 (352)
Q Consensus       268 ave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~rL  304 (352)
                      ||+.=..    -....++  ....=-.||.++..+.+
T Consensus       875 ave~l~p----~~q~~IL--~SS~Ry~Y~~~rl~~i~  905 (1192)
T TIGR02773       875 AVEELVP----KIQHEIL--LSSKRYRYVQKRLKRIV  905 (1192)
T ss_pred             HHHHHHH----HHHHHHH--HHHHHHHHHHHHHHHHH
T ss_conf             9987634----5347762--23467899999999999


No 56 
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase; InterPro: IPR006395   These sequences describe methylaspartate ammonia-lyase, also called beta-methylaspartase. It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. .
Probab=30.20  E-value=33  Score=13.69  Aligned_cols=55  Identities=16%  Similarity=0.413  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-CCCC-CCCCHHHHHHHHHHHHHHHHHHCC----CCCCCCC
Q ss_conf             899999999999987688688751-8884-799989999999999999999788----7988999
Q gi|254780964|r  257 FQQKSRTMLHEATLLEIAYAHETM-PKGF-VGLNAPSCEQYMQFIANRRCHQIG----LEPLFKY  315 (352)
Q Consensus       257 ~~~~i~~~~~eave~E~~~~~~~~-~~~~-~Gl~~~~~~~yi~y~an~rL~~lG----~~~~f~~  315 (352)
                      -...+-+|+-..+.. .-  |-++ +... +|++-+.+.+||+|+.+|. ..||    |.|+|.+
T Consensus       177 R~~nvdkMilK~vdV-LP--HgLiNsve~k~G~dG~~l~EyvkWl~~R~-~~lgv~~gY~P~fH~  237 (414)
T TIGR01502       177 RERNVDKMILKEVDV-LP--HGLINSVEKKLGLDGEKLLEYVKWLSERI-AKLGVSEGYRPVFHV  237 (414)
T ss_pred             HHHCHHHHHHHHCCC-CC--CCHHCCHHHHCCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCEEEE
T ss_conf             761334422300255-76--40120203222887115577888899988-750678898406887


No 57 
>pfam08671 SinI Anti-repressor SinI. SinR is a pleiotropic regulator of several late growth processes. It is a tetrameric DNA binding protein whose activity is down-regulated thorough the formation of a SinI:SinR protein complex. When complexed with SinI, the SinR tetramer is disrupted such that is no longer able to bind DNA.
Probab=29.23  E-value=24  Score=14.60  Aligned_cols=27  Identities=11%  Similarity=0.272  Sum_probs=17.6

Q ss_pred             HHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             688688751888479998999999999
Q gi|254780964|r  272 EIAYAHETMPKGFVGLNAPSCEQYMQF  298 (352)
Q Consensus       272 E~~~~~~~~~~~~~Gl~~~~~~~yi~y  298 (352)
                      ..+|...+..--..|++.+++.+|+.+
T Consensus         2 D~EW~~Li~EA~~~Gis~ee~r~fL~~   28 (30)
T pfam08671         2 DQEWVQLIKEAMEAGLSKEEFREFLEF   28 (30)
T ss_pred             CHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf             579999999999814679999999850


No 58 
>pfam10603 consensus
Probab=28.14  E-value=36  Score=13.45  Aligned_cols=40  Identities=10%  Similarity=0.066  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999876886887518884799989999999999999
Q gi|254780964|r  262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR  302 (352)
Q Consensus       262 ~~~~~eave~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~  302 (352)
                      +++++.|..+|-+|..+ |..-+.|-|.+++..=|+-+.+.
T Consensus         2 kk~yerA~KlEqef~e~-FtaiVqGdt~e~i~~qvK~vI~~   41 (55)
T pfam10603         2 KKTYERALKLEQEFGEY-FTAIVQGDSLEEIYTQIKSVIEE   41 (55)
T ss_pred             CHHHHHHHHHHHHHHHH-CEEEEECCCHHHHHHHHHHHHHH
T ss_conf             06999999999999987-12545089899999999999998


No 59 
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit; InterPro: IPR011881 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA .    .
Probab=27.83  E-value=36  Score=13.41  Aligned_cols=227  Identities=16%  Similarity=0.206  Sum_probs=121.4

Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CC
Q ss_conf             99852026899899999999999998643333455666401330577999999999999997789999999971----46
Q gi|254780964|r   65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL----GL  140 (352)
Q Consensus        65 ~~dw~t~~~Lt~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l----~~  140 (352)
                      ..||     |+.+=|..+.+.++..+.+| +||--+=.+=....|..--++.+..-...|+=|-.---...|+|    |.
T Consensus        13 a~dW-----MP~~YR~tLir~ISqHahSE-ivGmLPEg~Wi~rAPtL~RK~~lmAKvQDE~GHG~yLy~aaEtLlapyG~   86 (297)
T TIGR02156        13 AKDW-----MPEAYRKTLIRQISQHAHSE-IVGMLPEGEWITRAPTLKRKLILMAKVQDEAGHGLYLYAAAETLLAPYGV   86 (297)
T ss_pred             CCCC-----CCHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf             7778-----70889999999864000233-31257787654778517789998756542145268999999987501589


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCCH
Q ss_conf             4699999997200189877889999974012101026777401499999999740001444-114788998997598012
Q gi|254780964|r  141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF-YTGFAQILSLGRANKMVG  219 (352)
Q Consensus       141 ~~~e~f~~~~~~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~F-ys~Fa~~~~l~~~g~m~g  219 (352)
                      +.+|.....+.=     |+.|    ...+.-++. +...-+-..=   |+=-++|+--+.+ -+| +-+|          
T Consensus        87 ~Reel~~~Ll~g-----kaKy----ssiFnypTl-tWAD~G~iGW---LVDGAAI~nQ~~L~~~S-YGPY----------  142 (297)
T TIGR02156        87 SREELLDALLTG-----KAKY----SSIFNYPTL-TWADIGVIGW---LVDGAAIINQIPLLRCS-YGPY----------  142 (297)
T ss_pred             CHHHHHHHHHCC-----CCCC----CCCCCCCCC-CHHHCCCCCH---HHHHHHHHHHHHHHCCC-CCHH----------
T ss_conf             889999998548-----7651----220147754-5422052000---33567999889873068-9723----------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHC-CC---------------
Q ss_conf             8999999985666669999999997655375422067899999999999987688688-751-88---------------
Q gi|254780964|r  220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH-ETM-PK---------------  282 (352)
Q Consensus       220 ~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~-~~~-~~---------------  282 (352)
                       +..+..||..|+.|.+-|..|+-++.+.-        .+.=++|+.+|+.= -=|.. ..| |.               
T Consensus       143 -~RAm~RiC~EE~FH~~qG~~i~l~~~~~G--------t~~Qr~M~QdAlNR-wWWp~lmmfGP~d~~s~~s~~~ev~~k  212 (297)
T TIGR02156       143 -SRAMVRICKEESFHQRQGYEILLTLARHG--------TQEQRQMVQDALNR-WWWPSLMMFGPEDADSPNSGQQEVSTK  212 (297)
T ss_pred             -HHHHHHHHCCCHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             -58887670211125775799999998617--------88799999988764-317888523888766666404555655


Q ss_pred             -CCCCCC-HHHHHHHHHHHHHHHHHHCCCC---C-C-CCCC-C----CCHHH--HHHHHCCCCC
Q ss_conf             -847999-8999999999999999978879---8-8-9998-8----83257--8997178867
Q gi|254780964|r  283 -GFVGLN-APSCEQYMQFIANRRCHQIGLE---P-L-FKYT-E----NPFPW--MSEVIDLKKE  332 (352)
Q Consensus       283 -~~~Gl~-~~~~~~yi~y~an~rL~~lG~~---~-~-f~~~-~----nP~~W--~~~~~~~~~~  332 (352)
                       +|--.| -+.=..||.-. =.++..||+-   | + |+.+ .    .+++|  |...+.+++.
T Consensus       213 wkIk~~sNdelRQ~F~d~~-vp~~~~lGlT~PDp~L~~ne~~g~w~~~~i~W~EF~~vi~g~g~  275 (297)
T TIGR02156       213 WKIKRKSNDELRQKFIDAT-VPQLESLGLTIPDPELKQNEERGHWVYGEIDWDEFKQVIKGNGP  275 (297)
T ss_pred             HCCCCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             1442146667889999887-68998747757885345134418613589887899999816899


No 60 
>TIGR00601 rad23 UV excision repair protein Rad23; InterPro: IPR004806   All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. Rad23 contains a ubiquitin-like domain that interacts with catalytically active proteasomes and two ubiquitin (Ub)-associated (UBA) sequences that bind Ub. Rad23 interacts with ubiquitinated cellular proteins through the synergistic action of its UBA domains.    In humans, Rad23 complexes with the XPC protein.; GO: 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=27.53  E-value=8.2  Score=17.87  Aligned_cols=93  Identities=15%  Similarity=0.210  Sum_probs=60.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHH----HHHHHHHHCCC----C--C
Q ss_conf             01289999999856666699999999976553754220--67899999999999987----68868875188----8--4
Q gi|254780964|r  217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT--KEFQQKSRTMLHEATLL----EIAYAHETMPK----G--F  284 (352)
Q Consensus       217 m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~E~p~l~~--~~~~~~i~~~~~eave~----E~~~~~~~~~~----~--~  284 (352)
                      .|.+-++=+-|.|-=    ..-.-|+.+|-+++|.|..  ....|....|+-|.|+.    -.+=...+.+.    +  .
T Consensus       309 ~PqFq~lRq~vq~NP----~~L~~lL~~iG~~nPQL~~~I~~h~E~F~qlL~Epv~~nmqDv~~~~~d~~~gGGG~~~~~  384 (453)
T TIGR00601       309 QPQFQQLRQVVQQNP----QLLPPLLQQIGQENPQLLQQISQHPEEFLQLLNEPVEENMQDVLEGESDMVGGGGGEDIEV  384 (453)
T ss_pred             CHHHHHHHHHHHCCH----HHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             365676727761266----7899999973453737999965260678887504731358987324677767875567764


Q ss_pred             CC-CCHHHHHH-------HHHHHHH-----HHHHHCCCCCCC
Q ss_conf             79-99899999-------9999999-----999978879889
Q gi|254780964|r  285 VG-LNAPSCEQ-------YMQFIAN-----RRCHQIGLEPLF  313 (352)
Q Consensus       285 ~G-l~~~~~~~-------yi~y~an-----~rL~~lG~~~~f  313 (352)
                      .| +....+=+       ||.+...     .||..|||+.--
T Consensus       385 ~G~iae~g~gq~~GeGsf~I~vTp~e~EAIeRL~~LGF~r~L  426 (453)
T TIGR00601       385 TGEIAEAGVGQMNGEGSFQIQVTPEEKEAIERLCALGFDRGL  426 (453)
T ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCC
T ss_conf             355524467865665211676341257789999971798675


No 61 
>pfam08899 DUF1844 Domain of unknown function (DUF1844). This family of proteins are functionally uncharacterized.
Probab=26.61  E-value=38  Score=13.27  Aligned_cols=16  Identities=38%  Similarity=0.497  Sum_probs=6.1

Q ss_pred             CCCCCHHHHHHHHHHH
Q ss_conf             2689989999999999
Q gi|254780964|r   71 KNGLTDDERLMIKRNL   86 (352)
Q Consensus        71 ~~~Lt~~Ek~~~~~~l   86 (352)
                      +++|+++|+.++..++
T Consensus        52 kGNLt~~E~~lL~~~l   67 (74)
T pfam08899        52 KGNLTADEARLLENLL   67 (74)
T ss_pred             CCCCCHHHHHHHHHHH
T ss_conf             3699999999999999


No 62 
>pfam06556 ASFV_p27 IAP-like protein p27 C-terminus. This family represents the C-terminal region of the African swine fever virus IAP-like protein p27. This family is found in conjunction with pfam00653. It has been suggested that the family may be a host range gene involved in aspects of infection in the arthropod host, ticks of the genus Ornithodoros.
Probab=24.87  E-value=32  Score=13.79  Aligned_cols=10  Identities=30%  Similarity=0.381  Sum_probs=4.1

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999985666
Q gi|254780964|r  223 QYQYIMRDES  232 (352)
Q Consensus       223 ~i~~I~RDE~  232 (352)
                      +|+-|.+||+
T Consensus       100 giepikkden  109 (131)
T pfam06556       100 GIEPIKKDEN  109 (131)
T ss_pred             CCCCCCCCCC
T ss_conf             7510234411


No 63 
>KOG0011 consensus
Probab=24.36  E-value=35  Score=13.54  Aligned_cols=86  Identities=19%  Similarity=0.161  Sum_probs=48.2

Q ss_pred             CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCC
Q ss_conf             801289999999856-666699999999976553754220--678999999999999876886887518884----7999
Q gi|254780964|r  216 KMVGIAEQYQYIMRD-ESLHLNFGIDVINQIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKGF----VGLN  288 (352)
Q Consensus       216 ~m~g~~~~i~~I~RD-E~lH~~f~~~l~~~l~~E~p~l~~--~~~~~~i~~~~~eave~E~~~~~~~~~~~~----~Gl~  288 (352)
                      -.+.+.++-+.|... +.+|     .+++++-+++|.+..  .+.++....|+-+.++-+..=.....+.+.    +.+|
T Consensus       221 ~~~qf~~lR~~iqqNP~ll~-----~~Lqqlg~~nP~L~q~Iq~nqe~Fl~mlnep~~~~~~~~~~~~~~~~~~~~I~vt  295 (340)
T KOG0011         221 NQPQFQQLRQMIQQNPELLH-----PLLQQLGKQNPQLLQLIQENQEAFLQLLNEPVEGGDGGGTGAPAAEGPGHQIQVT  295 (340)
T ss_pred             CCHHHHHHHHHHHHCHHHHH-----HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf             66999999999863989999-----9999984138799999997899999986054556655444653103875437607


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             899999999999999997887988
Q gi|254780964|r  289 APSCEQYMQFIANRRCHQIGLEPL  312 (352)
Q Consensus       289 ~~~~~~yi~y~an~rL~~lG~~~~  312 (352)
                      .++      --|=.||..|||+.-
T Consensus       296 pee------~eAIeRL~alGF~ra  313 (340)
T KOG0011         296 PEE------KEAIERLEALGFPRA  313 (340)
T ss_pred             HHH------HHHHHHHHHHCCCHH
T ss_conf             878------999999997087477


No 64 
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=24.19  E-value=42  Score=12.97  Aligned_cols=41  Identities=15%  Similarity=0.121  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHH
Q ss_conf             89999999999998768868875188847-999899999999
Q gi|254780964|r  257 FQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQ  297 (352)
Q Consensus       257 ~~~~i~~~~~eave~E~~~~~~~~~~~~~-Gl~~~~~~~yi~  297 (352)
                      ....++.+.++.++--+.+++.++|.|-. ....+.+.+.|+
T Consensus       155 ~~~~v~p~~~~~i~P~k~~ADlIi~~~~~~~~~~~~i~~~i~  196 (198)
T cd02023         155 YLKFVKPMHEQFIEPTKRYADVIIPRGGDNHVAIDLIVQHIK  196 (198)
T ss_pred             HHHHHHHHHHHHCCCCHHCCCEEECCCCCCCHHHHHHHHHHH
T ss_conf             998607879986524151473897899986219999999984


No 65 
>pfam02007 MtrH Tetrahydromethanopterin S-methyltransferase MtrH subunit. The enzyme tetrahydromethanopterin S-methyltransferase EC:2.1.1.86 is composed of eight subunits. The enzyme is a membrane- associated enzyme complex which catalyses an energy-conserving, sodium-ion-translocating step in methanogenesis from hydrogen and carbon dioxide.
Probab=22.22  E-value=46  Score=12.72  Aligned_cols=42  Identities=19%  Similarity=0.184  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999998643333455666401330577999999999999997789
Q gi|254780964|r   81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH  129 (352)
Q Consensus        81 ~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~  129 (352)
                      .+.+-+-|++-.+    +   ..|+=.-+.|++|+-...-+-+=-+--|
T Consensus        78 A~~kYidfv~~i~----d---~PfliDSt~~~ar~aa~kya~E~GladR  119 (296)
T pfam02007        78 AIIRYIDFVADVT----D---APFLIDSTEGEVRLAAAKYATEVGLADR  119 (296)
T ss_pred             HHHHHHHHHHCCC----C---CCEEECCCCHHHHHHHHHHHHHHCHHHH
T ss_conf             9999888763257----7---8756438867888999866555144677


No 66 
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733   Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway .   TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=20.56  E-value=18  Score=15.50  Aligned_cols=46  Identities=20%  Similarity=0.352  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHH---HHHHHHCCCCCCCCC
Q ss_conf             87688688751888-47999899999999999---999997887988999
Q gi|254780964|r  270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIA---NRRCHQIGLEPLFKY  315 (352)
Q Consensus       270 e~E~~~~~~~~~~~-~~Gl~~~~~~~yi~y~a---n~rL~~lG~~~~f~~  315 (352)
                      ++..+.++.+++.+ ++|+|...+.+--+..+   +....=+|+.|+|+-
T Consensus        92 D~p~~~aR~l~G~~~iiG~S~~~~~e~~~a~~C~~~~gaDY~G~Gp~fpT  141 (210)
T TIGR00693        92 DLPVSEARKLLGPDKIIGVSTHNLEELAEAAACELKEGADYIGVGPIFPT  141 (210)
T ss_pred             CCCHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf             89989999853899579853379899999998764078988886371158


No 67 
>pfam05756 S-antigen S-antigen protein. S-antigens are heat stable proteins that are found in the blood of individuals infected with malaria.
Probab=20.03  E-value=51  Score=12.42  Aligned_cols=30  Identities=17%  Similarity=0.196  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             144411478899899759801289999999
Q gi|254780964|r  198 GMWFYTGFAQILSLGRANKMVGIAEQYQYI  227 (352)
Q Consensus       198 Gi~Fys~Fa~~~~l~~~g~m~g~~~~i~~I  227 (352)
                      .|.||.-|.++|-+...|+.+++-+-+.-|
T Consensus         6 SVsfyLFFiYLYIYkTYGKVKNTD~elSnI   35 (310)
T pfam05756         6 SVTFYLFFIYLYIYKTYGKVKNTDKELSNI   35 (310)
T ss_pred             EEHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             315789999999987524323640666543


Done!