HHsearch alignment for GI: 254780964 and conserved domain: pfam11266
>pfam11266 DUF3066 Protein of unknown function (DUF3066). This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=97.86 E-value=0.0022 Score=42.34 Aligned_cols=202 Identities=16% Similarity=0.169 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 98999999999999986433334556664013305779999999999999977899999999714646999999972001
Q gi|254780964|r 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 (352)
Q Consensus 75 t~~Ek~~~~~~l~~~~~~D~~v~~~~~~~i~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~~~ 154 (352)
T Consensus 4 s~~YkdAYSRINaIVIeGEqeA~~Nyi-~l~~l--lP~~~dEL~rLakME~rH~kgF~aCgrNL~V~~Dm---------- 70 (219)
T pfam11266 4 SETYKDAYSRINAIVIEGEQEAHDNYI-SLAEL--LPDHAEELKRLAKMENRHKKGFQACGKNLSVTPDM---------- 70 (219)
T ss_pred HHHHHHHHHHHCEEEEECHHHHHHHHH-HHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_conf 288899998740155735087898699-99987--84038999999999998876888862378689893----------
Q ss_pred HHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 89877889999974012101026777401499999999740001444114788998-99759801289999999856666
Q gi|254780964|r 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRDESL 233 (352)
Q Consensus 155 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~lEGi~Fys~Fa~~~~-l~~~g~m~g~~~~i~~I~RDE~l 233 (352)
T Consensus 71 -----~fA~~fF~~Lh~n-Fq~A~--~egkv~TCLlIQaliIE~------FAIaAYniYipVAD~FARkITegVVkDEy~ 136 (219)
T pfam11266 71 -----DFAKEFFSPLHGN-FQTAA--AEGKVVTCLLIQALIIEA------FAIAAYNIYIPVADPFARKITEGVVKDEYT 136 (219)
T ss_pred -----HHHHHHHHHHHHH-HHHHH--HCCCEEEHHHHHHHHHHH------HHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -----8999999999899-99998--659922229899999999------999987631103667777887767744777
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 69999999997655375422067899999999999987688688751888-4799989999999999999999788798
Q gi|254780964|r 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEP 311 (352)
Q Consensus 234 H~~f~~~l~~~l~~E~p~l~~~~~~~~i~~~~~eave~E~~~~~~~~~~~-~~Gl~~~~~~~yi~y~an~rL~~lG~~~ 311 (352)
T Consensus 137 HLN~Ge~WLk~~f~--------~~k~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi~Y~eAL~~IGf~~ 207 (219)
T pfam11266 137 HLNFGEEWLKANFE--------TSKEELEEANRENLPLVWKMLNQVADDAAVLGMDKEALVEDFMIAYGEALTNIGFTT 207 (219)
T ss_pred HCCHHHHHHHHHHH--------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 60268999999999--------999999998886163999999999878999778899999999999999999759758