BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (352 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254040522|gb|ACT57318.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254040641|gb|ACT57437.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/352 (100%), Positives = 352/352 (100%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ Sbjct: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD Sbjct: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID Sbjct: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA Sbjct: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD Sbjct: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 >gi|315122301|ref|YP_004062790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495703|gb|ADR52302.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 372 Score = 601 bits (1549), Expect = e-170, Method: Compositional matrix adjust. Identities = 276/352 (78%), Positives = 313/352 (88%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A+ GL PIQ G R++ D+KRM+NARSDVNQLLPLKY WAWEKYL CNNHWMPTEV Sbjct: 21 IADTVGLGPIQKGSARIHADEKRMINARSDVNQLLPLKYKWAWEKYLFGCNNHWMPTEVS 80 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 MQ D+ALW+SKNGLT+DER MIKRNLGFFA+SESLVANNIVLAIYRH+SNPECRQYLLRQ Sbjct: 81 MQADIALWQSKNGLTNDERHMIKRNLGFFATSESLVANNIVLAIYRHISNPECRQYLLRQ 140 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEAVH+HTFQYI+ SL L+EGELFNMYRE+PSIT KA+WAL+YT+ L+S SF+TGT D Sbjct: 141 AFEEAVHTHTFQYIVESLSLNEGELFNMYREIPSITNKASWALRYTKNLNSTSFSTGTDD 200 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ+FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYIMRDES+HLNFGID Sbjct: 201 RDQDFLRDLIAFYVVFEGMWFYTGFAQILSLGRYNKMVGIAEQYQYIMRDESVHLNFGID 260 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIKIENPHLWT++FQQ+ R ML EA LLE+AY +TMPK F+G+NA CE+YM FI Sbjct: 261 MINQIKIENPHLWTEDFQQEVRKMLQEAALLEVAYGKDTMPKPFLGINANLCEKYMYFIT 320 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+P+F+ TENPFPWMSEVIDL+KEKNFFETRVTEYQ+G L WD Sbjct: 321 NRRCTQIGLDPVFEKTENPFPWMSEVIDLQKEKNFFETRVTEYQKGTSLDWD 372 >gi|72163401|ref|YP_291058.1| ribonucleotide-diphosphate reductase subunit beta [Thermobifida fusca YX] gi|71917133|gb|AAZ57035.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX] Length = 354 Score = 594 bits (1532), Expect = e-168, Method: Compositional matrix adjust. Identities = 274/351 (78%), Positives = 309/351 (88%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N TGL IQ+G RV+V+DKRM+N+R+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV M Sbjct: 4 VNTTGLGEIQSGAARVDVEDKRMINSRADVNQLLPLKYRWAWEKYLAACNNHWMPTEVSM 63 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKSK+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YRHL+NPECRQYLLRQA Sbjct: 64 QADIALWKSKDGLTEDERLMVKRNLGFFATAESLVANNIVLAVYRHLTNPECRQYLLRQA 123 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEAVH+HTFQYI SLGLDEGELFNMYREVPSITAK WAL+YT+ L +P+FTTGT +A Sbjct: 124 FEEAVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALRYTRNLENPNFTTGTPEA 183 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ FL+DL FYVV EGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV Sbjct: 184 DQAFLRDLVAFYVVLEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 243 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQIKIENPHLWT+EFQ + RTML EA LE AY ETMP+G +GLNA CEQYM+FI + Sbjct: 244 INQIKIENPHLWTEEFQDEVRTMLIEACELEAAYGRETMPRGILGLNAKLCEQYMRFITD 303 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RR Q+GL P+F TENPFPWMSE++DLKKEKNFFETRV EYQ G+ L WD Sbjct: 304 RRAEQLGLAPIFGETENPFPWMSEMMDLKKEKNFFETRVIEYQTGSGLSWD 354 >gi|110635036|ref|YP_675244.1| ribonucleotide-diphosphate reductase subunit beta [Mesorhizobium sp. BNC1] gi|110286020|gb|ABG64079.1| ribonucleotide reductase [Chelativorans sp. BNC1] Length = 369 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 273/348 (78%), Positives = 303/348 (87%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I+ G RV+VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV MQ D Sbjct: 22 TGLGTIERGAGRVSVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQAD 81 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFEE Sbjct: 82 IALWKSRDGLTEDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEE 141 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 AVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL+YT+ L P+F TGT +ADQ Sbjct: 142 AVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALEYTRHLDDPNFRTGTPEADQA 201 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVINQ Sbjct: 202 FLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQ 261 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK ENPHLWT EFQ++ R ML +A LE AY +TMP+GF+GLNA CEQYM FIANRRC Sbjct: 262 IKHENPHLWTPEFQEELRRMLKDAAELEAAYGRDTMPRGFLGLNAGQCEQYMHFIANRRC 321 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL P+F TENPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 322 AQLGLPPVFPETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 369 >gi|209885874|ref|YP_002289731.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha carboxidovorans OM5] gi|209874070|gb|ACI93866.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha carboxidovorans OM5] Length = 377 Score = 587 bits (1513), Expect = e-166, Method: Compositional matrix adjust. Identities = 273/351 (77%), Positives = 299/351 (85%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A TGL I RV+VD+KRM+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M Sbjct: 27 AEQTGLGEIDRTGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLSGCNNHWMPTEVSM 86 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 87 QADIALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 146 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F TGT +A Sbjct: 147 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTKNLDDPDFKTGTLEA 206 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV Sbjct: 207 DQAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 266 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQIK+ENPHLWTK FQ + R M+ EA LE AY +TMP+GF+GLNA CEQYM FIAN Sbjct: 267 INQIKLENPHLWTKAFQDEVRGMISEAAGLEAAYGRDTMPRGFLGLNAALCEQYMHFIAN 326 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RRC QIGL P+F TENPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 327 RRCAQIGLAPVFAETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 377 >gi|92119123|ref|YP_578852.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter hamburgensis X14] gi|91802017|gb|ABE64392.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14] Length = 416 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 270/348 (77%), Positives = 296/348 (85%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I RV VDDKRM+NAR+DVNQLLPLKYGWAWEKYLS CNNHWMPTEV MQ D Sbjct: 69 TGLGAIDRSGGRVRVDDKRMINARADVNQLLPLKYGWAWEKYLSGCNNHWMPTEVSMQAD 128 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFEE Sbjct: 129 IALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEE 188 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 AVH+HTFQYI+ SLGLDEGELFNMYREV SIT KA WAL++T+ L P F TGT +ADQ Sbjct: 189 AVHTHTFQYIVESLGLDEGELFNMYREVSSITDKAAWALKHTRHLDDPGFKTGTPEADQA 248 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 FL+DL FYVVFEGMWFYTGF QILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVINQ Sbjct: 249 FLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQ 308 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLW+K FQ++ R ML A LE AY +TMP+GF+GLNA CEQYM IANRRC Sbjct: 309 IKIENPHLWSKPFQEEVRAMLKNAAELEAAYGRDTMPRGFLGLNAALCEQYMHVIANRRC 368 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL P+F +NPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 369 AQLGLAPVFAEADNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 416 >gi|85714830|ref|ZP_01045816.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A] gi|85698316|gb|EAQ36187.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A] Length = 389 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 270/351 (76%), Positives = 297/351 (84%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A+ TGL I G RV VDDKRM+NAR+DVNQLLP KY WAWEKYLS CNNHWMPTEV M Sbjct: 39 ADATGLGDIDRGAARVRVDDKRMINARADVNQLLPFKYRWAWEKYLSGCNNHWMPTEVSM 98 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS++GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 99 QADIALWKSRDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 158 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F TGT +A Sbjct: 159 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEA 218 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ FL+DL FYVVFEGMWFYTGF QILSLGR NKM+GIAEQYQYI+RDES+HLNFGIDV Sbjct: 219 DQAFLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMIGIAEQYQYILRDESIHLNFGIDV 278 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQIKIENPHLWTK FQ + R ML A LE AY +TMP+GF+GLNA CE YM IAN Sbjct: 279 INQIKIENPHLWTKTFQDEVRAMLKNAAELEAAYGRDTMPRGFLGLNAALCETYMHVIAN 338 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RRC Q+GL P+F T+NPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 339 RRCAQLGLAPVFAETDNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 389 >gi|226227154|ref|YP_002761260.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas aurantiaca T-27] gi|226090345|dbj|BAH38790.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas aurantiaca T-27] Length = 371 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 269/348 (77%), Positives = 297/348 (85%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I RV VDDK M+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV MQ D Sbjct: 24 TGLGEIDRHGGRVRVDDKAMINCRADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQAD 83 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 LA+W+S++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFEE Sbjct: 84 LAIWRSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEE 143 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+HTFQYI SLGLDEGELFNMYREVPSITAKA WAL+YTQ L+ P F+TGT + DQ Sbjct: 144 AIHTHTFQYICESLGLDEGELFNMYREVPSITAKAAWALKYTQHLADPGFSTGTPETDQA 203 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVINQ Sbjct: 204 FLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQ 263 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK+ENPHLW+ FQ++ R ML EA LE+AY +TMP+GF+GLNA CE YM FI NRRC Sbjct: 264 IKVENPHLWSAAFQEEVRQMLAEACELEVAYGRDTMPRGFLGLNAALCETYMHFITNRRC 323 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL P+F T+NPFPWMSE IDLKKEKNFFETRV EYQ G LKWD Sbjct: 324 AQLGLAPVFPETDNPFPWMSEAIDLKKEKNFFETRVIEYQNGGALKWD 371 >gi|299134880|ref|ZP_07028072.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2] gi|298590690|gb|EFI50893.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2] Length = 373 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 269/348 (77%), Positives = 300/348 (86%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ D Sbjct: 26 TGLGAIDRSGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLAGCNNHWMPTEVSMQAD 85 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFEE Sbjct: 86 IALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEE 145 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 AVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L +P F+TGT++ADQ Sbjct: 146 AVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQNLDNPDFSTGTQEADQS 205 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVINQ Sbjct: 206 FLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQ 265 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK+EN HLWTK FQ+ R M+ +A LE AY +TMP+GF+GLNA CEQYM FIANRRC Sbjct: 266 IKLENQHLWTKAFQEDVRGMIRDAAELEAAYGRDTMPRGFLGLNAALCEQYMHFIANRRC 325 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL P+F TENPFPWMSE +DLKKEKNFFETRV EYQ G L W+ Sbjct: 326 AQIGLTPVFPETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 373 >gi|75677068|ref|YP_319489.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter winogradskyi Nb-255] gi|74421938|gb|ABA06137.1| ribonucleotide reductase [Nitrobacter winogradskyi Nb-255] Length = 391 Score = 580 bits (1496), Expect = e-164, Method: Compositional matrix adjust. Identities = 268/348 (77%), Positives = 295/348 (84%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL I G RV VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV MQ D Sbjct: 44 AGLGDIDRGGARVRVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQAD 103 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFEE Sbjct: 104 IALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFEE 163 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 AVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F TGT +ADQ Sbjct: 164 AVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEADQA 223 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 FL+DL FYVVFEGMWFYTGF QILSLGR NKMVGIAEQYQYI+RDES+HLNFGID+INQ Sbjct: 224 FLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDIINQ 283 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLW+K FQ++ R ML A LE AY +TMP+GF+GLNA CE YM IANRRC Sbjct: 284 IKIENPHLWSKPFQEEVRAMLKNAADLEAAYGRDTMPRGFLGLNATLCETYMHVIANRRC 343 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL P+F +NPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 344 AQLGLAPVFPDADNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 391 >gi|297563527|ref|YP_003682501.1| ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847975|gb|ADH69995.1| Ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 360 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 266/348 (76%), Positives = 301/348 (86%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 +GL I+ +RVNVDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ D Sbjct: 13 SGLGEIERDAERVNVDDKAMINARADVNQLLPLKYTWAWEKYLAGCNNHWMPTEVAMQAD 72 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS++GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR L+NPECRQYLLRQAFEE Sbjct: 73 IALWKSRDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLTNPECRQYLLRQAFEE 132 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 AVH+HTFQYI SLGLDEGELFNMYREVPSITAK WAL+YTQ L +P F TGT +ADQ Sbjct: 133 AVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALKYTQNLENPEFRTGTPEADQA 192 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVINQ Sbjct: 193 FLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQ 252 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLW++EFQ + R ML EA LE+AY ETMP+G +GLNA CE+YM FI +RR Sbjct: 253 IKIENPHLWSEEFQAEVRQMLTEACELEVAYGRETMPRGVLGLNAELCEKYMHFITDRRA 312 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL P+F TENPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 313 EQIGLAPIFGETENPFPWMSEMMDLQKEKNFFETRVIEYQTGGGLDWD 360 >gi|90425007|ref|YP_533377.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas palustris BisB18] gi|90107021|gb|ABD89058.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris BisB18] Length = 386 Score = 575 bits (1481), Expect = e-162, Method: Compositional matrix adjust. Identities = 265/350 (75%), Positives = 297/350 (84%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + TGL I RV++DDK M+N R+DVNQLLPLK+ WAWEKYL+ACNNHWMPTEV MQ Sbjct: 37 DATGLGAIDRSGARVSIDDKAMINCRADVNQLLPLKHRWAWEKYLAACNNHWMPTEVSMQ 96 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALW S++GLT+DER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF Sbjct: 97 ADIALWTSRDGLTEDERRAIKRNLGFFATSESLVANNIVLAIYRHLTNPECRQYLLRQAF 156 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L P+F TGT +AD Sbjct: 157 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQHLDDPTFATGTVEAD 216 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 + FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI Sbjct: 217 RAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 276 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 NQIKIENP LWT FQ++ R ML EA LE AY+ +TMP+GF+GLNA CEQYM FI NR Sbjct: 277 NQIKIENPKLWTAGFQEELRGMLQEAAELEAAYSRDTMPRGFLGLNAALCEQYMHFITNR 336 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RC Q+GL P+F ENPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 337 RCAQLGLAPIFAEVENPFPWMSETMDLKKEKNFFETRVIEYQNGGALTWD 386 >gi|134097869|ref|YP_001103530.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|291007412|ref|ZP_06565385.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|133910492|emb|CAM00605.1| ribonucleoside-diphosphate reductase, beta subunit [Saccharopolyspora erythraea NRRL 2338] Length = 360 Score = 575 bits (1481), Expect = e-162, Method: Compositional matrix adjust. Identities = 261/349 (74%), Positives = 300/349 (85%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 ++GL I RV+V +K M+N+R+DVNQLLPLKYGWAWEKYL+ CNNHWMPTEV MQ Sbjct: 12 SSGLGEIDRDGGRVDVAEKAMINSRADVNQLLPLKYGWAWEKYLAGCNNHWMPTEVSMQA 71 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS++GLTDDER+M+KRNLGFFA++ESLVANNIVLA+YRH++NPECRQYLLRQAFE Sbjct: 72 DIALWKSRDGLTDDERMMLKRNLGFFATAESLVANNIVLAVYRHITNPECRQYLLRQAFE 131 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EAVH+HTFQYI SLGLDEGELFNMYRE+PSI+ K WAL+YTQ L +P F GT +ADQ Sbjct: 132 EAVHTHTFQYICESLGLDEGELFNMYREIPSISDKDAWALRYTQNLENPDFEIGTPEADQ 191 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID IN Sbjct: 192 AFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCIN 251 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLWT EFQ++ RTML EA LE+AY +TMP+G +GLNA CE+YM+FI NRR Sbjct: 252 QIKIENPHLWTPEFQEEVRTMLTEACELEVAYGRDTMPRGILGLNAGLCEEYMRFITNRR 311 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C Q+GLEP+F T NPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 312 CAQLGLEPVFPETANPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 360 >gi|256377255|ref|YP_003100915.1| ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM 43827] gi|255921558|gb|ACU37069.1| Ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM 43827] Length = 358 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 265/347 (76%), Positives = 296/347 (85%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL I+ G RV+VDDK M+NAR+DVNQLLPLKY WAWEKYL+ C NHWMPTEV MQ D+ Sbjct: 12 GLGEIERGAGRVHVDDKAMINARADVNQLLPLKYHWAWEKYLAGCANHWMPTEVSMQADI 71 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALW+S NGLT DER IKRNLGFFA+SESLVANN+VLA+YR+++NPECRQYLLRQAFEEA Sbjct: 72 ALWRSPNGLTADERHAIKRNLGFFATSESLVANNVVLAVYRNITNPECRQYLLRQAFEEA 131 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 VH+HTF+YI +SLGLDEGELFNMYREVPSIT KA WAL+YT++L P F TGT +ADQ F Sbjct: 132 VHTHTFEYICSSLGLDEGELFNMYREVPSITDKAAWALKYTKSLEDPEFRTGTPEADQAF 191 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID INQI Sbjct: 192 LRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDAINQI 251 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW + FQ + RTML EA LEIAY +TMP G +GLNA CEQYM+FI NRRC Sbjct: 252 KIENPHLWGEAFQAEVRTMLAEACELEIAYGRDTMPNGLLGLNAELCEQYMRFITNRRCA 311 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GLEP+F TENPFPWMSE +DLKKEKNFFETRVTEY G L WD Sbjct: 312 QLGLEPVFAATENPFPWMSEAVDLKKEKNFFETRVTEYASGGTLDWD 358 >gi|257055668|ref|YP_003133500.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis DSM 43017] gi|256585540|gb|ACU96673.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis DSM 43017] Length = 349 Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust. Identities = 261/340 (76%), Positives = 298/340 (87%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G RVNVDDK M+NAR+DVNQLLP+KYGWAWEKYL+ C+NHWMPTEV MQ D+ALWKS + Sbjct: 10 GAARVNVDDKAMINARADVNQLLPMKYGWAWEKYLAGCDNHWMPTEVSMQADIALWKSPD 69 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLTDDERLM+KRNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQAFEEAVH+HTFQ Sbjct: 70 GLTDDERLMLKRNLGFFATAESLVANNLVLAVYRHLTNPECRQYLLRQAFEEAVHTHTFQ 129 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI SLGLDEGELFN YREVPSI K +WAL+YT+ L P+FTTGT +ADQEFL+DL F Sbjct: 130 YICVSLGLDEGELFNAYREVPSIANKDSWALRYTRNLEDPNFTTGTMEADQEFLRDLVAF 189 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 YVVFEGMWFYTGFAQ+LSLGR NKMVGIAEQYQYI+RDES+HLNFG+D INQIK ENPHL Sbjct: 190 YVVFEGMWFYTGFAQVLSLGRRNKMVGIAEQYQYILRDESIHLNFGVDCINQIKAENPHL 249 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 WT EFQQ+ R ML EA LE+AYAH+TMP+ +GL+A CEQYM FI +RR Q+GL+P+ Sbjct: 250 WTPEFQQQVRDMLVEACELEVAYAHDTMPRPMLGLSAELCEQYMHFITDRRAAQLGLDPV 309 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 F ENPFPWMSEVIDL+KEKNFFETRVT+Y+ GA L WD Sbjct: 310 FGERENPFPWMSEVIDLRKEKNFFETRVTDYRSGAALAWD 349 >gi|192291019|ref|YP_001991624.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas palustris TIE-1] gi|192284768|gb|ACF01149.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris TIE-1] Length = 373 Score = 571 bits (1471), Expect = e-161, Method: Compositional matrix adjust. Identities = 264/350 (75%), Positives = 290/350 (82%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + TGL I G RV VDDKRM+NAR+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV MQ Sbjct: 24 DTTGLGTIDRGAARVRVDDKRMINARADVNQLLPLKYHWAWEKYLAACNNHWMPTEVSMQ 83 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF Sbjct: 84 ADIALWKSRDGLTEDERHMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAF 143 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L P F TGT D Sbjct: 144 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALDYTKHLDDPHFETGTPATD 203 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 Q FL DL FYVVFEGMWFYTGFAQILSLGR KM GIAEQYQYI+RDES+HLNFGIDVI Sbjct: 204 QAFLLDLIAFYVVFEGMWFYTGFAQILSLGRRQKMTGIAEQYQYILRDESIHLNFGIDVI 263 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 NQIK+EN +WT FQ R M+H+A LE AY +TMP G +GLNA CE YM FIANR Sbjct: 264 NQIKLENAAVWTASFQDDIRGMIHDAAELEAAYGRDTMPHGLLGLNAALCESYMHFIANR 323 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RC Q+GL P+F T+NPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 324 RCVQLGLRPVFAETDNPFPWMSETMDLKKEKNFFETRVIEYQNGGALDWD 373 >gi|300784783|ref|YP_003765074.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis mediterranei U32] gi|299794297|gb|ADJ44672.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis mediterranei U32] Length = 357 Score = 571 bits (1471), Expect = e-161, Method: Compositional matrix adjust. Identities = 261/348 (75%), Positives = 296/348 (85%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I+ G R+NVDDKRM+NAR+DVNQLLP+KY WAWEKYL+ CNNHWMPTEV MQ D Sbjct: 10 TGLGEIEVGAARINVDDKRMINARADVNQLLPMKYKWAWEKYLAGCNNHWMPTEVAMQAD 69 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQAFEE Sbjct: 70 IALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQAFEE 129 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 AVH+HTFQYI SLGL EGELFNMYREVPSI+ K WAL+YTQ L +P F TGT +ADQ Sbjct: 130 AVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEADQA 189 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID INQ Sbjct: 190 FLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCINQ 249 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLWT+EFQ + R ML EA LE+ YA +TMP+G +GL+A CEQYM F+ +RR Sbjct: 250 IKIENPHLWTEEFQAEVRGMLKEACELEVKYARDTMPRGMLGLSAQLCEQYMHFVTDRRA 309 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL P+F TENPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 310 QQIGLAPIFGETENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 357 >gi|302525965|ref|ZP_07278307.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. AA4] gi|302434860|gb|EFL06676.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. AA4] Length = 357 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 260/348 (74%), Positives = 296/348 (85%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I+ G R+NVDDKRM+NAR+DVNQLLP+KY WAW+KYL+ACNNHWMPTEV MQ D Sbjct: 10 TGLGEIEVGAARINVDDKRMINARADVNQLLPMKYRWAWDKYLAACNNHWMPTEVAMQAD 69 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQAFEE Sbjct: 70 IALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQAFEE 129 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 AVH+HTFQYI SLGL EGELFNMYREVPSI+ K WAL+YTQ L +P F TGT +ADQ Sbjct: 130 AVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEADQA 189 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID INQ Sbjct: 190 FLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCINQ 249 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLWT+EFQ + R ML EA LE+ YA +TMP+G +GL+A CEQYM FI +RR Sbjct: 250 IKIENPHLWTEEFQAEVRGMLQEACELEVKYARDTMPRGMLGLSADLCEQYMHFITDRRA 309 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL P++ ENPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 310 QQIGLPPIYGENENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 357 >gi|300022335|ref|YP_003754946.1| ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans ATCC 51888] gi|299524156|gb|ADJ22625.1| Ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans ATCC 51888] Length = 374 Score = 567 bits (1461), Expect = e-160, Method: Compositional matrix adjust. Identities = 266/348 (76%), Positives = 293/348 (84%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I RV VDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ D Sbjct: 27 TGLGNIDRNGGRVRVDDKAMINARADVNQLLPLKYRWAWEKYLAGCNNHWMPTEVSMQAD 86 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKSK+GLT++ER MIKRNLGFFA+SESLVANNIVLAIYR+L+NPECRQYLLRQAFEE Sbjct: 87 IALWKSKDGLTEEERRMIKRNLGFFAASESLVANNIVLAIYRNLTNPECRQYLLRQAFEE 146 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 AVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L PSF TGTK+ DQ Sbjct: 147 AVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALAYTKHLDDPSFKTGTKETDQA 206 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVINQ Sbjct: 207 FLRDLIAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVINQ 266 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK EN HLW+K FQ + R ML +A LE AY +TMP G +GLN EQYM+FIANRRC Sbjct: 267 IKAENAHLWSKAFQDEVRGMLRDAAQLEAAYGRDTMPTGLLGLNPGLTEQYMEFIANRRC 326 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL P+FK ENPFPWMSE +DLKKEKNFFETRV EYQ G L W+ Sbjct: 327 AQLGLTPVFKDRENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 374 >gi|324998522|ref|ZP_08119634.1| ribonucleoside-diphosphate reductase beta chain [Pseudonocardia sp. P1] Length = 358 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 254/350 (72%), Positives = 298/350 (85%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + TGL I G ++ DDKRM+NAR+DVNQLLPLKY WAW+KYL+ C+NHWMPTEV MQ Sbjct: 9 DTTGLGEIDRGAAPIDADDKRMINARADVNQLLPLKYHWAWDKYLAGCSNHWMPTEVAMQ 68 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALW+S++GLTDDERLM+ RNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQ+F Sbjct: 69 ADIALWRSRDGLTDDERLMLTRNLGFFATAESLVANNVVLAVYRHLTNPECRQYLLRQSF 128 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEAVH+HTFQY+ SLGLDEGELFN YR+VPSIT K WAL+YTQ LS P F TGT + D Sbjct: 129 EEAVHTHTFQYVCESLGLDEGELFNAYRQVPSITDKDAWALRYTQALSDPDFCTGTPEND 188 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 + FL+DL FYVVFEGMWFYTGFAQIL+LGR NKMVG+AEQYQYI+RDES+HLNFGID I Sbjct: 189 RAFLRDLVAFYVVFEGMWFYTGFAQILALGRRNKMVGVAEQYQYILRDESIHLNFGIDCI 248 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 NQIKIENPHLWT+EF + R MLHEA LE+AYA +TMP+G +GL A SCEQY++FI +R Sbjct: 249 NQIKIENPHLWTEEFAAEIRAMLHEACELEVAYARDTMPRGMLGLTAESCEQYLRFITDR 308 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 R QIGL PLF +NPFPWMSE +DL+KEKNFFETRVTEY+ G L+WD Sbjct: 309 RAEQIGLAPLFGQADNPFPWMSEAMDLRKEKNFFETRVTEYRTGGSLEWD 358 >gi|114321252|ref|YP_742935.1| ribonucleotide-diphosphate reductase subunit beta [Alkalilimnicola ehrlichii MLHE-1] gi|114227646|gb|ABI57445.1| Ribonucleoside-diphosphate reductase [Alkalilimnicola ehrlichii MLHE-1] Length = 354 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 257/350 (73%), Positives = 296/350 (84%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 N TGL I+AG RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEVPM Sbjct: 5 NATGLEAIEAGAHRVSVDEKRMINCRADVNQLLPLKYEWAWEKYLAGCNNHWMPTEVPMG 64 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALW+ +GLT DERLMIKRNLGFFA+SESLVANNIVLAIYRH++NPECRQYLLRQAF Sbjct: 65 ADIALWRHPDGLTADERLMIKRNLGFFATSESLVANNIVLAIYRHITNPECRQYLLRQAF 124 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEA+H+HTFQYI+ SL LDEGELFNMYREVPSIT KA WAL+YTQ L S F T +++ Sbjct: 125 EEAIHTHTFQYIVESLDLDEGELFNMYREVPSITDKAAWALKYTQNLESGHFDTTSREGA 184 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 Q FL+DL FYVVFEGMWFYTGFAQILSLGR NKM GIAE YQYI+RDES+HLNFGIDVI Sbjct: 185 QSFLRDLVAFYVVFEGMWFYTGFAQILSLGRQNKMTGIAEMYQYILRDESIHLNFGIDVI 244 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 NQI+ ENP LWT +F+Q+ TML EA LE+AYA +TMP+G +GLNA CE+YM FI NR Sbjct: 245 NQIRHENPELWTNDFEQEVLTMLREAVELEVAYARDTMPRGMLGLNADMCEEYMHFITNR 304 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RC Q+GL+ L+ NPFPWMSEV+DL+KEKNFFETRVT+Y+ G L+WD Sbjct: 305 RCAQLGLKELYPGATNPFPWMSEVMDLQKEKNFFETRVTDYRTGGALQWD 354 >gi|284032753|ref|YP_003382684.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836] gi|283812046|gb|ADB33885.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836] Length = 354 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 259/353 (73%), Positives = 288/353 (81%), Gaps = 4/353 (1%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 T PI G RV V DK M+NAR+DVNQLLPLKY WAW+KYL+ACNNHWMPTEV MQ Sbjct: 2 TTTTPPIAVGATRVEVADKAMINARADVNQLLPLKYQWAWDKYLAACNNHWMPTEVSMQA 61 Query: 64 DLALWK----SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 D+ALW+ +K+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR LSNPECRQYLLR Sbjct: 62 DIALWRRPAGAKDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLSNPECRQYLLR 121 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAFEEAVH+HTFQYI TSLGLDEGELFNMYREVPSI AK WAL+YT+ L+ F TGT Sbjct: 122 QAFEEAVHTHTFQYICTSLGLDEGELFNMYREVPSIAAKDAWALKYTRHLTDGDFRTGTP 181 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 +AD +FL+DL FYVVFEGMWFYTGFAQIL LGR NKMVGIAEQYQYI+RDESLHLNFGI Sbjct: 182 EADTDFLRDLIAFYVVFEGMWFYTGFAQILVLGRRNKMVGIAEQYQYILRDESLHLNFGI 241 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 D INQIK+ENPHLWT FQ + R ML EA LE+AY T+P G +GL A CEQYM FI Sbjct: 242 DCINQIKLENPHLWTPAFQAEVRRMLTEACELEVAYGRATLPNGMLGLTAELCEQYMHFI 301 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +RR Q+GL PLF T NPF WMSEV+DLKKEKNFFETRV EYQ G L WD Sbjct: 302 TDRRAEQLGLAPLFGETRNPFGWMSEVMDLKKEKNFFETRVIEYQSGGGLSWD 354 >gi|261855609|ref|YP_003262892.1| ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus c2] gi|261836078|gb|ACX95845.1| Ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus c2] Length = 398 Score = 544 bits (1402), Expect = e-153, Method: Compositional matrix adjust. Identities = 253/348 (72%), Positives = 287/348 (82%), Gaps = 1/348 (0%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I G RV+V KR++NA +DVNQLLP+KY WAWEKYL+ CNNHWMPTEV MQ D Sbjct: 51 TGLEGIAQGAGRVDVSAKRIINATADVNQLLPMKYTWAWEKYLAGCNNHWMPTEVSMQAD 110 Query: 65 LALWKSKNG-LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 +ALWK ++G LT DER MI RNLGFFA++ESLVANNIVLAIY+ ++NPECRQYLLRQAFE Sbjct: 111 IALWKGRDGGLTADERAMIMRNLGFFATAESLVANNIVLAIYKQVTNPECRQYLLRQAFE 170 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EAVH+HTFQYI+ SLGL EGELFNMYRE+PSITAK WAL+YT+ L+ F T T Q Sbjct: 171 EAVHTHTFQYIVESLGLAEGELFNMYREIPSITAKDEWALKYTKNLADGDFDTSTTKGAQ 230 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 +FL+DL FYVVFEGMWFYTGFAQILSLGR NKM GIAEQYQYIMRDES+H+NFGIDVIN Sbjct: 231 DFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMTGIAEQYQYIMRDESIHMNFGIDVIN 290 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLWT++F+ + ML EA LEIAYA +TMP G +GLNA C +Y+ FIANRR Sbjct: 291 QIKIENPHLWTEDFKAEVTRMLKEAAELEIAYARDTMPHGLLGLNAEMCAEYLHFIANRR 350 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 C+QIGL LF NPFPWMSEVIDLKKEKNFFETRVT+YQ G L W Sbjct: 351 CNQIGLAELFPGATNPFPWMSEVIDLKKEKNFFETRVTDYQTGGALNW 398 >gi|300113307|ref|YP_003759882.1| ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113] gi|299539244|gb|ADJ27561.1| Ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113] Length = 412 Score = 524 bits (1349), Expect = e-147, Method: Compositional matrix adjust. Identities = 231/347 (66%), Positives = 284/347 (81%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M D+ Sbjct: 66 GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ+ Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI Sbjct: 246 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 305 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLW+ F+Q++ M+ EA LE YAH+TMP+G +GLNAP E+Y++FIANRRC Sbjct: 306 KLENPHLWSDSFKQETLRMIQEAVSLETQYAHDTMPRGVLGLNAPMFEEYLKFIANRRCA 365 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL + NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD Sbjct: 366 QIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412 >gi|77165986|ref|YP_344511.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosococcus oceani ATCC 19707] gi|254436303|ref|ZP_05049809.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus oceani AFC27] gi|76884300|gb|ABA58981.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC 19707] gi|207087993|gb|EDZ65266.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus oceani AFC27] Length = 412 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 231/347 (66%), Positives = 284/347 (81%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M D+ Sbjct: 66 GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ+ Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI Sbjct: 246 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 305 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLW+ F+Q++ M+ EA LE YAH+TMP+G +GLNAP E+Y++FIANRRC Sbjct: 306 KLENPHLWSDSFKQETLRMIQEAVSLETQYAHDTMPRGVLGLNAPMFEEYLKFIANRRCA 365 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL + NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD Sbjct: 366 QIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412 >gi|292490774|ref|YP_003526213.1| ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4] gi|291579369|gb|ADE13826.1| Ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4] Length = 415 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 230/347 (66%), Positives = 285/347 (82%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYL+ C NHWMP E+ M D+ Sbjct: 69 GIENIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLNGCANHWMPQEINMNADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA Sbjct: 129 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ+ Sbjct: 189 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQYLADPQFHTGTDENDQKL 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI Sbjct: 249 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT F+Q++ M+ EA LE YA++TMP+G +GLNAP ++Y++FIANRRC Sbjct: 309 KIENPHLWTDSFKQETIQMIREAVSLETQYAYDTMPRGVLGLNAPMFDEYLKFIANRRCA 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL + NPFPWMSE++DLKKEKNFFETRVTEYQ G LKWD Sbjct: 369 QIGLPEQYPGASNPFPWMSEILDLKKEKNFFETRVTEYQTGGALKWD 415 >gi|288941383|ref|YP_003443623.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM 180] gi|288896755|gb|ADC62591.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM 180] Length = 458 Score = 521 bits (1342), Expect = e-146, Method: Compositional matrix adjust. Identities = 232/348 (66%), Positives = 283/348 (81%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL + G RV VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M D Sbjct: 111 TGLESLAMGASRVRVDDKRIINCRADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNAD 170 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 LALWK +GLT+DERL++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 171 LALWKDPHGLTEDERLIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 230 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY++ SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ+ Sbjct: 231 ALHTHAYQYVVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPHFQTGTPENDQK 290 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYI+RDES+H+NFGIDVINQ Sbjct: 291 LLRELVAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQ 350 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLWT EF+Q+ M+ EA LE YAH+TMP+G +GLNA E Y+ FIANRRC Sbjct: 351 IKIENPHLWTPEFRQELVGMIREAVELEARYAHDTMPRGVLGLNAQMFEDYLHFIANRRC 410 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL + NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD Sbjct: 411 AQIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALNWD 458 >gi|220935777|ref|YP_002514676.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7] gi|219997087|gb|ACL73689.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7] Length = 408 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 226/349 (64%), Positives = 287/349 (82%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 NTGL I+ G +R+ VDDK+++N R+D+NQL+P KY WAW+KYL C NHWMP E+ M Sbjct: 60 NTGLEDIELGAERIRVDDKKIINCRADLNQLVPFKYQWAWQKYLDGCANHWMPQEINMNA 119 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE Sbjct: 120 DIALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 179 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +T+ L+ P F TGT + DQ Sbjct: 180 EALHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTRYLADPDFHTGTPENDQ 239 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L++L FYV+FEG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVIN Sbjct: 240 KLLRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVIN 299 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT F+++ RTM+ +A LE YA +TMP+G +G+NA E+Y+ FIANRR Sbjct: 300 QIKVENPHLWTAAFKEEMRTMIRDAVELEAQYARDTMPRGVLGMNAAMFEEYLHFIANRR 359 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL ++ ENPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD Sbjct: 360 CAQIGLAEIYPGAENPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 408 >gi|53804295|ref|YP_114081.1| ribonucleotide-diphosphate reductase subunit beta [Methylococcus capsulatus str. Bath] gi|53758056|gb|AAU92347.1| ribonucleoside-diphosphate reductase, beta subunit [Methylococcus capsulatus str. Bath] Length = 403 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 229/348 (65%), Positives = 286/348 (82%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I+ G +R+ VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M D Sbjct: 56 TGLENIEMGARRIQVDDKRIINCRADLNQLVPFKYQWAWQKYLDACANHWMPQEINMNAD 115 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS +GLT DER++IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 116 IALWKSADGLTPDERIIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 175 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY++ SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ+ Sbjct: 176 ALHTHAYQYVVESLGLDEGEVFNMYREVPAVARKAEWALPFTQYLADPYFKTGTPENDQK 235 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQ Sbjct: 236 LLRELIAFYVIFEGIFFYVGFTQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQ 295 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK+ENPHLWT F+ + M+ EA +E YA++TMP+G +GLNAP ++Y+QFIANRRC Sbjct: 296 IKVENPHLWTDGFKVEMVQMIREAVDIETQYAYDTMPRGILGLNAPMFKEYLQFIANRRC 355 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL + NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD Sbjct: 356 AQIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGTLSWD 403 >gi|289208615|ref|YP_003460681.1| ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix] gi|288944246|gb|ADC71945.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix] Length = 412 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 225/348 (64%), Positives = 288/348 (82%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G +R+ VDDK+++N +D+NQL+P KY WAW+KYL C NHWMP E+ M D Sbjct: 65 TGLEDLEMGAERIRVDDKKIINCHADLNQLVPFKYKWAWQKYLDGCANHWMPQEINMNAD 124 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 125 IALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 184 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY + SLGLDEGE+FNMYREVPS+ KA WAL +T+ L+ P+F TGT +ADQ+ Sbjct: 185 ALHTHAYQYCVESLGLDEGEIFNMYREVPSVATKAEWALPFTKHLADPNFRTGTPEADQK 244 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L++L FYVVFEG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVINQ Sbjct: 245 LLRELIAFYVVFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVINQ 304 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK+ENPHLWT+EF+ + RT++ +A LE YA +TMP+G +G+NA E+Y+ FIANRRC Sbjct: 305 IKVENPHLWTEEFKNEMRTLISDAVELEAQYARDTMPRGVLGMNAQMFEEYLHFIANRRC 364 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL ++ +NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD Sbjct: 365 AQIGLAEMYPGADNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412 >gi|254496936|ref|ZP_05109775.1| ribonucleotide-diphosphate reductase subunit beta [Legionella drancourtii LLAP12] gi|254353845|gb|EET12541.1| ribonucleotide-diphosphate reductase subunit beta [Legionella drancourtii LLAP12] Length = 369 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 227/348 (65%), Positives = 282/348 (81%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TG I+ G R++VDDKR++N R+D+NQL+P KY WAW+KYLSAC NHWMP E+ M D Sbjct: 17 TGYESIEMGAARIHVDDKRIINCRADLNQLVPFKYTWAWDKYLSACANHWMPNEISMSAD 76 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGLTDDERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 77 VALWKDPNGLTDDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 136 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY+I SLGLDE E+FNMYRE+PS+ KA WAL YTQ+L SF TGT + DQ Sbjct: 137 ALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLGDESFHTGTIENDQR 196 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+DL FYV+FEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVINQ Sbjct: 197 LLRDLIAFYVIFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQ 256 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLWT EF+++ ++ + +E YA +TMP G +G+NA E+Y+ FIANRR Sbjct: 257 IKIENPHLWTPEFKEEIIQLIKDGVAMEYQYAKDTMPHGILGMNAEMFEEYLHFIANRRL 316 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 317 NQIGLPEQYPGAENPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 364 >gi|192360823|ref|YP_001982048.1| ribonucleotide-diphosphate reductase subunit beta [Cellvibrio japonicus Ueda107] gi|190686988|gb|ACE84666.1| ribonucleoside reductase, beta subunit [Cellvibrio japonicus Ueda107] Length = 429 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 222/347 (63%), Positives = 284/347 (81%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 83 GLEELEMGAARIQVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 142 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKSK+GLT+DER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQ+FEEA Sbjct: 143 ALWKSKDGLTEDERRIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQSFEEA 202 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W+L +T +L +P+FTTGT + DQE Sbjct: 203 IHTHAYQYCIESLGMDEGEVFNMYRELPSVANKAAWSLHHTHSLGNPTFTTGTPETDQEL 262 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FYVV EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 263 LRNLVAFYVVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 322 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLWT EFQQ+ M+ E T LEI YA ++MP+G +G+NA E+Y+ FIANRRC Sbjct: 323 KLENPHLWTAEFQQEVLQMILEGTELEIQYARDSMPRGVLGMNAAMMEEYLHFIANRRCA 382 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL+ F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 383 QLGLKEQFPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 429 >gi|262373382|ref|ZP_06066661.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter junii SH205] gi|262313407|gb|EEY94492.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter junii SH205] Length = 427 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 222/346 (64%), Positives = 281/346 (81%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA+W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKASWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|52842002|ref|YP_095801.1| ribonucleotide-diphosphate reductase subunit beta [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629113|gb|AAU27854.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 381 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 225/348 (64%), Positives = 282/348 (81%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M D Sbjct: 32 TGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSAD 91 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 92 VALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 151 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +F TGT + DQ Sbjct: 152 ALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQR 211 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVINQ Sbjct: 212 LLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQ 271 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLWT EF+ + ++ E LE YA +TMP G +G+NA E+Y+ FIANRR Sbjct: 272 IKIENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRL 331 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 332 NQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 379 >gi|270156779|ref|ZP_06185436.1| ribonucleotide-diphosphate reductase beta subunit [Legionella longbeachae D-4968] gi|289164772|ref|YP_003454910.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella longbeachae NSW150] gi|269988804|gb|EEZ95058.1| ribonucleotide-diphosphate reductase beta subunit [Legionella longbeachae D-4968] gi|288857945|emb|CBJ11805.1| putative ribonucleoside-diphosphate reductase, beta subunit [Legionella longbeachae NSW150] Length = 366 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 223/352 (63%), Positives = 282/352 (80%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + TG ++ G R++VDDKR++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ Sbjct: 13 LTGATGYESLEMGAARIHVDDKRIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEIS 72 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+ ERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ Sbjct: 73 MSADVALWKDPNGLTEAERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 132 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QY+I SLGLDE E+FNMYRE+PS+ KA WAL YTQ+L+ +F TGT + Sbjct: 133 AFEEALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLADETFHTGTVE 192 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGID Sbjct: 193 NDQRLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGID 252 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 VINQIKIENPHLWT EF+++ ++ + LE YA +TMP+G +G+NA E+Y+ FIA Sbjct: 253 VINQIKIENPHLWTSEFKEEIIQLIRQGVDLEYQYAKDTMPQGILGMNAEMFEEYLHFIA 312 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRR QIGL + NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 313 NRRLTQIGLAEQYPGAVNPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 364 >gi|148359319|ref|YP_001250526.1| ribonucleoside-diphosphate reductase subunit beta [Legionella pneumophila str. Corby] gi|296107366|ref|YP_003619066.1| ribonucleoside-diphosphate reductase beta chain [Legionella pneumophila 2300/99 Alcoy] gi|148281092|gb|ABQ55180.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella pneumophila str. Corby] gi|295649267|gb|ADG25114.1| ribonucleoside-diphosphate reductase beta chain [Legionella pneumophila 2300/99 Alcoy] gi|307610475|emb|CBX00047.1| hypothetical protein LPW_18021 [Legionella pneumophila 130b] Length = 367 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 225/348 (64%), Positives = 282/348 (81%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M D Sbjct: 18 TGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSAD 77 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 78 VALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 137 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +F TGT + DQ Sbjct: 138 ALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQR 197 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVINQ Sbjct: 198 LLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQ 257 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLWT EF+ + ++ E LE YA +TMP G +G+NA E+Y+ FIANRR Sbjct: 258 IKIENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRL 317 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 318 NQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365 >gi|54294662|ref|YP_127077.1| ribonucleotide-diphosphate reductase subunit beta [Legionella pneumophila str. Lens] gi|53754494|emb|CAH15978.1| hypothetical protein lpl1739 [Legionella pneumophila str. Lens] Length = 367 Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust. Identities = 225/348 (64%), Positives = 282/348 (81%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M D Sbjct: 18 TGLEALEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSAD 77 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 78 VALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 137 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +F TGT + DQ Sbjct: 138 ALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQR 197 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVINQ Sbjct: 198 LLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQ 257 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLWT EF+ + ++ E LE YA +TMP G +G+NA E+Y+ FIANRR Sbjct: 258 IKIENPHLWTPEFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRL 317 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 318 NQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365 >gi|54297688|ref|YP_124057.1| ribonucleotide-diphosphate reductase subunit beta [Legionella pneumophila str. Paris] gi|53751473|emb|CAH12891.1| hypothetical protein lpp1739 [Legionella pneumophila str. Paris] Length = 367 Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust. Identities = 225/348 (64%), Positives = 282/348 (81%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M D Sbjct: 18 TGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSAD 77 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 78 VALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 137 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +F TGT + DQ Sbjct: 138 ALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQR 197 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVINQ Sbjct: 198 LLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVINQ 257 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLWT EF+ + ++ E LE YA +TMP G +G+NA E+Y+ FIANRR Sbjct: 258 IKIENPHLWTPEFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRRL 317 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 318 NQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365 >gi|332872596|ref|ZP_08440564.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii 6014059] gi|332739125|gb|EGJ69984.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii 6014059] Length = 440 Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 95 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 154 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 155 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 214 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 215 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 274 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 275 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 334 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 335 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 394 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 395 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 440 >gi|332852155|ref|ZP_08433982.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii 6013150] gi|332867554|ref|ZP_08437707.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii 6013113] gi|332729527|gb|EGJ60866.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii 6013150] gi|332733971|gb|EGJ65116.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii 6013113] Length = 440 Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 95 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 154 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 155 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 214 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 215 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 274 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 275 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 334 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 335 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 394 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 395 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 440 >gi|260551040|ref|ZP_05825245.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter sp. RUH2624] gi|260405988|gb|EEW99475.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter sp. RUH2624] Length = 427 Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|90022104|ref|YP_527931.1| ribonucleotide-diphosphate reductase subunit beta [Saccharophagus degradans 2-40] gi|89951704|gb|ABD81719.1| Class Ia ribonucleoside-diphosphate reductase beta subunit [Saccharophagus degradans 2-40] Length = 423 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 221/352 (62%), Positives = 285/352 (80%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M GL ++ G +R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV Sbjct: 72 MDPTLGLEELEIGAERIEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 131 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WKS +GL++DER +I R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQ Sbjct: 132 MTADVATWKSPDGLSEDERRIIMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQ 191 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P+F TGT + Sbjct: 192 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSIAHTQGMSDPTFKTGTPE 251 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 ADQE L++L FYV+ EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID Sbjct: 252 ADQELLRNLIGFYVITEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 311 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 VINQIK+ENPHLWT+EFQ +++ M+ E T LEIAYA +TMP+G +G+NA E+Y+ FIA Sbjct: 312 VINQIKLENPHLWTEEFQAETKQMILEGTELEIAYARDTMPRGVLGMNAAMMEEYLHFIA 371 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRR Q+GL + +NPFPWMSE++DL+KEKNFFETRV EYQ G L W+ Sbjct: 372 NRRMAQLGLAEAYPGAKNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWE 423 >gi|169797064|ref|YP_001714857.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AYE] gi|213156529|ref|YP_002318190.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii AB0057] gi|215484526|ref|YP_002326761.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter baumannii AB307-0294] gi|239501302|ref|ZP_04660612.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB900] gi|260555643|ref|ZP_05827863.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii ATCC 19606] gi|301345633|ref|ZP_07226374.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB056] gi|301512780|ref|ZP_07238017.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB058] gi|301596291|ref|ZP_07241299.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB059] gi|169149991|emb|CAM87885.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii AYE] gi|193076530|gb|ABO11186.2| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter baumannii ATCC 17978] gi|213055689|gb|ACJ40591.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii AB0057] gi|213987168|gb|ACJ57467.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter baumannii AB307-0294] gi|260410554|gb|EEX03852.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii ATCC 19606] Length = 427 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|293609145|ref|ZP_06691448.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024] gi|292829718|gb|EFF88080.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024] Length = 427 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWTAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|169634186|ref|YP_001707922.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii SDF] gi|169152978|emb|CAP02026.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii] Length = 427 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|184157022|ref|YP_001845361.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ACICU] gi|183208616|gb|ACC56014.1| Ribonucleotide reductase, beta subunit [Acinetobacter baumannii ACICU] Length = 427 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|255318309|ref|ZP_05359544.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SK82] gi|262379054|ref|ZP_06072210.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SH164] gi|255304621|gb|EET83803.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SK82] gi|262298511|gb|EEY86424.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SH164] Length = 427 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 223/346 (64%), Positives = 281/346 (81%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQIL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR + Sbjct: 322 KIENPHLWTAEFQQEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLN 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|110833571|ref|YP_692430.1| ribonucleotide-diphosphate reductase subunit beta [Alcanivorax borkumensis SK2] gi|110646682|emb|CAL16158.1| ribonucleoside reductase, beta subunit [Alcanivorax borkumensis SK2] Length = 430 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 220/347 (63%), Positives = 278/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G++ ++ RV VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M DL Sbjct: 84 GVAELEGAAGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADL 143 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK +GLTDDER ++KRNLGFFA+++SLVANN+VLAIYR ++NPECRQY+LRQ+FEEA Sbjct: 144 ALWKKADGLTDDERRIVKRNLGFFATADSLVANNLVLAIYRLITNPECRQYILRQSFEEA 203 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY+E+PS+ KA W +QYT+ LS P FTTGT + D+ Sbjct: 204 IHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTPETDKAL 263 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVINQI Sbjct: 264 LENLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGIDVINQI 323 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLW + + K+ M+ E T LEI YA +TMP+G +G+NA E+Y+QFIANRR Sbjct: 324 KLENPHLWDAQMRDKATQMILEGTELEIQYARDTMPRGVLGMNAAMMEEYLQFIANRRLA 383 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL FK NPFPWMSE++DL+KEKNFFETRVTEYQ G L W+ Sbjct: 384 QLGLPEQFKGVNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 430 >gi|126640804|ref|YP_001083788.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ATCC 17978] gi|322506921|gb|ADX02375.1| nrdB [Acinetobacter baumannii 1656-2] gi|323516789|gb|ADX91170.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii TCDC-AB0715] Length = 361 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 16 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 75 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 76 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 135 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 136 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 195 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 196 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 255 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 256 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 315 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 316 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 361 >gi|325121074|gb|ADY80597.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter calcoaceticus PHEA-2] Length = 370 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 25 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 84 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 85 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 144 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+F TGT + DQ Sbjct: 145 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 204 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 205 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 264 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 265 KIENPHLWTAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 324 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 325 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 370 >gi|50083944|ref|YP_045454.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. ADP1] gi|49529920|emb|CAG67632.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter sp. ADP1] Length = 427 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 221/347 (63%), Positives = 280/347 (80%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL I+ G RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D Sbjct: 81 AGLQEIETGAARVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHD 140 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS+NGLT+DER+++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQAFEE Sbjct: 141 IALWKSENGLTEDERVIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQAFEE 200 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YTQ+LS P F TGT + DQ+ Sbjct: 201 AIHTHAYQYCIESLGMDEGEIFNMYHEIPSVARKAAWGLKYTQSLSDPKFETGTPETDQQ 260 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L++L FY V EG++FY GF QILS+GR NKM G++EQ+QYI+RDES+H+NFGID+INQ Sbjct: 261 LLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVSEQFQYILRDESMHVNFGIDMINQ 320 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLWT EFQQ+ M+ E TLLEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 321 IKIENPHLWTAEFQQEVIQMIVEGTLLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRL 380 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL ++ NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 381 AQLGLPEQYRGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|88812072|ref|ZP_01127324.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus mobilis Nb-231] gi|88790576|gb|EAR21691.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus mobilis Nb-231] Length = 370 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 220/348 (63%), Positives = 278/348 (79%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL + G R+ VDDKR++N R+D+NQL+P KY WAWEKYL NHWMP E+PM D Sbjct: 23 TGLDAPERGAARIRVDDKRIINCRADLNQLVPFKYHWAWEKYLQGSANHWMPQEIPMGRD 82 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + LWK ++GLT+DER ++KR+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 83 IELWKRRDGLTEDERTIVKRSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 142 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY+I SL +DEGE+FNMYREVPS+ KA WAL +T++L P F TGT ADQ Sbjct: 143 ALHTHAYQYVIESLAMDEGEVFNMYREVPSVARKAEWALPFTESLGDPDFRTGTPAADQR 202 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+DL FYV FEG++FYTGFAQ+L++GR NKM G AEQ+QYI+RDES+HLNFGIDVINQ Sbjct: 203 LLRDLIAFYVCFEGIFFYTGFAQVLAMGRRNKMTGTAEQFQYILRDESIHLNFGIDVINQ 262 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK ENPHLWT EFQ ++ + E+ LE+ YA +T+P+G +GLNA E+Y++FI NRR Sbjct: 263 IKQENPHLWTAEFQATAQRTILESMALEVDYARDTLPRGVLGLNAAMIEEYLRFITNRRL 322 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL F ENP PWMSE++DLKKEKNFFETRVTEY+ G L W+ Sbjct: 323 AQIGLTEAFPGAENPLPWMSELVDLKKEKNFFETRVTEYRTGGALSWE 370 >gi|262280153|ref|ZP_06057938.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter calcoaceticus RUH2202] gi|262260504|gb|EEY79237.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter calcoaceticus RUH2202] Length = 427 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 221/346 (63%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW+ EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWSAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|92112799|ref|YP_572727.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter salexigens DSM 3043] gi|91795889|gb|ABE58028.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens DSM 3043] Length = 420 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 220/348 (63%), Positives = 284/348 (81%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL ++ G R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL NHWMP EV M D Sbjct: 73 AGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNAD 132 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS +GLT+DER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEE Sbjct: 133 IALWKSNDGLTEDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFEE 192 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY + SLG+DEGE+FNMYREVPS+ AK+ W+L++TQ+L+ P F TGT + DQE Sbjct: 193 AIHTHAYQYCVESLGMDEGEVFNMYREVPSVAAKSAWSLKHTQSLARPDFHTGTPETDQE 252 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L++L FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D+INQ Sbjct: 253 LLRNLIAFYCVTEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDMINQ 312 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLWT EFQ + M+ E T LEIAYA ++MP+G +G+NA E+Y+ FI NRR Sbjct: 313 IKIENPHLWTPEFQDEVTQMIIEGTELEIAYARDSMPRGVLGMNAAIMEEYLHFICNRRL 372 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + ENPFPWMSE+IDL+KEKNFFETRVTEYQ G L WD Sbjct: 373 AQIGLKEQYPGAENPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 420 >gi|307546480|ref|YP_003898959.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas elongata DSM 2581] gi|307218504|emb|CBV43774.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas elongata DSM 2581] Length = 415 Score = 501 bits (1289), Expect = e-140, Method: Compositional matrix adjust. Identities = 219/348 (62%), Positives = 283/348 (81%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL ++ G R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL NHWMP EV M D Sbjct: 68 AGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNAD 127 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWKS +GLTDDER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEE Sbjct: 128 IALWKSADGLTDDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFEE 187 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY + SL +DEGE+FNMYRE+PS+ AK+ W+L++TQ+L+ P F TGT + DQE Sbjct: 188 AIHTHAYQYCVESLAMDEGEVFNMYREIPSVAAKSAWSLKHTQSLARPDFHTGTPETDQE 247 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L++L FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D+INQ Sbjct: 248 LLRNLVAFYCVTEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDMINQ 307 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLWT EFQ + M+ E T LEIAYA ++MP+G +G+NA E+Y+ FI NRR Sbjct: 308 IKIENPHLWTPEFQDECTQMILEGTELEIAYARDSMPRGVLGMNAAIMEEYLHFICNRRL 367 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ F +NPFPWMSE+IDL+KEKNFFETRVTEYQ G L WD Sbjct: 368 AQIGLKEQFPGAQNPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 415 >gi|226953559|ref|ZP_03824023.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC 27244] gi|294649451|ref|ZP_06726876.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter haemolyticus ATCC 19194] gi|226835696|gb|EEH68079.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC 27244] gi|292824656|gb|EFF83434.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter haemolyticus ATCC 19194] Length = 427 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 223/346 (64%), Positives = 279/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER +I R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIIMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFHTGTPENDQIL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT FQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWTATFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLA 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|254429337|ref|ZP_05043044.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp. DG881] gi|196195506|gb|EDX90465.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp. DG881] Length = 355 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 218/347 (62%), Positives = 277/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G++ ++ RV VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M DL Sbjct: 9 GVAELEGASGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADL 68 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK +GLTDDER ++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ+FEEA Sbjct: 69 ALWKKADGLTDDERRIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQSFEEA 128 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY+E+PS+ KA W +QYT+ LS P FTTGT + D+ Sbjct: 129 IHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTVETDKAL 188 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVINQI Sbjct: 189 LENLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGIDVINQI 248 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLW + + K+ M+ E LEI YA +TMP+G +G+NA E+Y+QFIANRR Sbjct: 249 KLENPHLWDAQMRDKATQMILEGAELEIQYARDTMPRGVLGMNAAMMEEYLQFIANRRLA 308 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL FK NPFPWMSE++DL+KEKNFFETRVTEYQ G L W+ Sbjct: 309 QLGLPEQFKGVNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 355 >gi|299771426|ref|YP_003733452.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. DR1] gi|298701514|gb|ADI92079.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. DR1] Length = 427 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 221/346 (63%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW+ EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWSAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|256822964|ref|YP_003146927.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM 16069] gi|256796503|gb|ACV27159.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM 16069] Length = 421 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 218/347 (62%), Positives = 280/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G R+ VDDK+M+N R+D+NQL+P KY WAW+KYL C+NHWMP E+ M D+ Sbjct: 75 GLEELEMGAARIEVDDKKMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEINMTKDV 134 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WK NGLTDDER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQAFEEA Sbjct: 135 ATWKDPNGLTDDERKIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQAFEEA 194 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY + SLG+DE E+FNMYREVPSI KA W++++TQ +S+P+F TGT +ADQE Sbjct: 195 IHTHAYQYCVESLGMDEAEVFNMYREVPSIAKKAAWSIKHTQGISNPTFKTGTDEADQEL 254 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D+INQI Sbjct: 255 LRNLIGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDIINQI 314 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLWT EF+Q+ M+ E T LEI YA +TMP+G +G+NA E+Y+QFI NRR Sbjct: 315 KLENPHLWTAEFKQEVLQMILEGTQLEIEYARDTMPRGVLGMNAGMMEEYLQFICNRRLA 374 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL FK NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 375 QLGLPEQFKNVSNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 421 >gi|327480258|gb|AEA83568.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas stutzeri DSM 4166] Length = 415 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 218/347 (62%), Positives = 281/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY EVPS+ KA+W L+YT+++S P+F TGT + D++F Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEVPSVAKKASWGLKYTRSISDPTFQTGTPETDKQF 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 249 LKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWNAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|262376783|ref|ZP_06070011.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter lwoffii SH145] gi|262308493|gb|EEY89628.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter lwoffii SH145] Length = 427 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 222/346 (64%), Positives = 281/346 (81%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQIL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENP LWT EFQ++ M+ E T+LEI YA +TMP+G +G+NA E+Y++FIANRR Sbjct: 322 KIENPGLWTTEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAGMMEEYLKFIANRRLA 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|254784923|ref|YP_003072351.1| ribonucleotide-diphosphate reductase subunit beta [Teredinibacter turnerae T7901] gi|237687536|gb|ACR14800.1| ribonucleoside-diphosphate reductase [Teredinibacter turnerae T7901] Length = 453 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 218/346 (63%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 108 GLEELEMGAARIEVDDKRMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMTADV 167 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A+WKS+ GL+ DER ++ R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQAFEEA Sbjct: 168 AIWKSEEGLSADERKIVMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQAFEEA 227 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P F TGT +ADQE Sbjct: 228 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSITHTQGISDPQFHTGTPEADQEL 287 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FYV+ EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 288 LRNLIGFYVITEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 347 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLWT+ FQQ+ + M+ E T LEI YA +TMP+G +G+NA E+Y+ FIANRR Sbjct: 348 KLENPHLWTESFQQEVKQMVLEGTELEIGYARDTMPRGVLGMNAAIMEEYLHFIANRRLA 407 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL+ + +NPFPWMSE++DL+KEKNFFETRV EYQ G L W Sbjct: 408 QLGLKEAYPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSW 453 >gi|262369327|ref|ZP_06062655.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter johnsonii SH046] gi|262315395|gb|EEY96434.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter johnsonii SH046] Length = 427 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 221/346 (63%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFQTGTPENDQIL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENP LWT EFQ++ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPSLWTAEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLA 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|212212091|ref|YP_002303027.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii CbuG_Q212] gi|212010501|gb|ACJ17882.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii CbuG_Q212] Length = 401 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 222/348 (63%), Positives = 279/348 (80%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M D Sbjct: 53 TGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTAD 112 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFEE Sbjct: 113 IALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFEE 172 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+ Sbjct: 173 ALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDRR 232 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+DL FYVVFEG++FY GF QIL++GR KM G +EQ+QYI+RDES+H+NFGIDVINQ Sbjct: 233 LLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVINQ 292 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLW K FQ++ M+ E LE YA +TMP+G +GLNA + Y+Q+IANRRC Sbjct: 293 IKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRRC 352 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL F +N FPWMSE++DLKKEKNFFETRV EYQ G LKWD Sbjct: 353 AQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400 >gi|153208286|ref|ZP_01946665.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165919229|ref|ZP_02219315.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii RSA 334] gi|212219268|ref|YP_002306055.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii CbuK_Q154] gi|120576070|gb|EAX32694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165917090|gb|EDR35694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii RSA 334] gi|212013530|gb|ACJ20910.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii CbuK_Q154] Length = 401 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 222/348 (63%), Positives = 279/348 (80%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M D Sbjct: 53 TGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTAD 112 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFEE Sbjct: 113 IALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFEE 172 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+ Sbjct: 173 ALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDRR 232 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+DL FYVVFEG++FY GF QIL++GR KM G +EQ+QYI+RDES+H+NFGIDVINQ Sbjct: 233 LLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVINQ 292 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLW K FQ++ M+ E LE YA +TMP+G +GLNA + Y+Q+IANRRC Sbjct: 293 IKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRRC 352 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL F +N FPWMSE++DLKKEKNFFETRV EYQ G LKWD Sbjct: 353 AQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400 >gi|29654845|ref|NP_820537.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii RSA 493] gi|154705923|ref|YP_001423853.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii Dugway 5J108-111] gi|161831080|ref|YP_001597389.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii RSA 331] gi|29542113|gb|AAO91051.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii RSA 493] gi|154355209|gb|ABS76671.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii Dugway 5J108-111] gi|161762947|gb|ABX78589.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii RSA 331] Length = 401 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 222/348 (63%), Positives = 279/348 (80%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M D Sbjct: 53 TGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTAD 112 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFEE Sbjct: 113 IALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFEE 172 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+ Sbjct: 173 ALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDRR 232 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+DL FYVVFEG++FY GF QIL++GR KM G +EQ+QYI+RDES+H+NFGIDVINQ Sbjct: 233 LLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVINQ 292 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IKIENPHLW K FQ++ M+ E LE YA +TMP+G +GLNA + Y+Q+IANRRC Sbjct: 293 IKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRRC 352 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL F +N FPWMSE++DLKKEKNFFETRV EYQ G LKWD Sbjct: 353 AQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400 >gi|146282010|ref|YP_001172163.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas stutzeri A1501] gi|145570215|gb|ABP79321.1| ribonucleoside reductase, small chain [Pseudomonas stutzeri A1501] Length = 415 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 217/347 (62%), Positives = 281/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F TGT + D++F Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPETDKQF 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 249 LKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWDAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNASMMEDYLKFIANRRLT 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|330811278|ref|YP_004355740.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379386|gb|AEA70736.1| Ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 415 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 216/347 (62%), Positives = 276/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D D+E Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTPDTDKEL 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|254483523|ref|ZP_05096750.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma proteobacterium HTCC2148] gi|214036244|gb|EEB76924.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma proteobacterium HTCC2148] Length = 425 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 218/348 (62%), Positives = 282/348 (81%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL ++ G RV+VD+K M+N R+D+NQL+PLKY WAW+KYL C NHWMP E+ M D Sbjct: 78 AGLEELEMGASRVSVDEKAMINCRADLNQLVPLKYDWAWQKYLDGCANHWMPQEINMTAD 137 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +A WKS +GL+DDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEE Sbjct: 138 VATWKSADGLSDDERRIVMRSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFEE 197 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY I SLG+DEGE+FNMYREVPS+ AKA+W+L +T +LS P+F TGT++ DQE Sbjct: 198 AIHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKASWSLSHTHSLSDPTFNTGTQETDQE 257 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQ Sbjct: 258 LLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQ 317 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK+ENP+LWT+ FQQ+ M+ E T +EI YA +TMP+G +G+NA E+Y+ FIANRR Sbjct: 318 IKLENPNLWTETFQQEVIQMILEGTEIEIQYARDTMPRGVLGMNAAIMEEYLHFIANRRL 377 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 378 SQLGLPEQFAGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 425 >gi|70731866|ref|YP_261608.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens Pf-5] gi|68346165|gb|AAY93771.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Pseudomonas fluorescens Pf-5] Length = 415 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 216/347 (62%), Positives = 276/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D D+E Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|312960686|ref|ZP_07775192.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas fluorescens WH6] gi|311285212|gb|EFQ63787.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas fluorescens WH6] Length = 416 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 216/347 (62%), Positives = 276/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D D+E Sbjct: 190 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 249 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 250 LRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 309 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 310 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 369 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|254516739|ref|ZP_05128798.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR5-3] gi|219675162|gb|EED31529.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR5-3] Length = 441 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 219/348 (62%), Positives = 279/348 (80%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL ++ G RV++D+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M D Sbjct: 94 AGLEELEMGAARVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTAD 153 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +A WK+ GLTDDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEE Sbjct: 154 VATWKNPEGLTDDERRIILRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFEE 213 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W+L +T LS P+F TGT ++DQ Sbjct: 214 AIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSLSHTHELSDPNFNTGTMESDQT 273 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQ Sbjct: 274 LLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQ 333 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK+ENPHLWT+EF+Q++ M+ E T LEI YA +TMP+G +G+NA E+Y+QFIANRR Sbjct: 334 IKLENPHLWTEEFKQEAIQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIANRRL 393 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 394 SQIGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 441 >gi|77460516|ref|YP_350023.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens Pf0-1] gi|77384519|gb|ABA76032.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas fluorescens Pf0-1] Length = 416 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 215/347 (61%), Positives = 275/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT + D+E Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 249 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 309 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 310 KIENPHLWDAEMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 369 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|148546452|ref|YP_001266554.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida F1] gi|148510510|gb|ABQ77370.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida F1] Length = 415 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 214/347 (61%), Positives = 276/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT + D+E Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|229590245|ref|YP_002872364.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens SBW25] gi|229362111|emb|CAY49013.1| putative ribonucleoside-diphosphate reductase beta chain [Pseudomonas fluorescens SBW25] Length = 416 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 215/347 (61%), Positives = 276/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT + D+E Sbjct: 190 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 249 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 250 LRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 309 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 310 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 369 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|28868867|ref|NP_791486.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato str. DC3000] gi|213969520|ref|ZP_03397656.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. tomato T1] gi|301385974|ref|ZP_07234392.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato Max13] gi|302058701|ref|ZP_07250242.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato K40] gi|302134408|ref|ZP_07260398.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852106|gb|AAO55181.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213925616|gb|EEB59175.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. tomato T1] gi|330960626|gb|EGH60886.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. maculicola str. ES4326] gi|331016758|gb|EGH96814.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 415 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 215/347 (61%), Positives = 274/347 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D D+E Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|66046950|ref|YP_236791.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae B728a] gi|237798938|ref|ZP_04587399.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806191|ref|ZP_04592895.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|63257657|gb|AAY38753.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv. syringae B728a] gi|330980156|gb|EGH78342.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aptata str. DSM 50252] gi|331021792|gb|EGI01849.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027304|gb|EGI07359.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] Length = 415 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 215/347 (61%), Positives = 275/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D D+E Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|330880140|gb|EGH14289.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966559|gb|EGH66819.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. actinidiae str. M302091] Length = 415 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 215/347 (61%), Positives = 274/347 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D D+E Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDKEL 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|119504228|ref|ZP_01626308.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2080] gi|119459736|gb|EAW40831.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2080] Length = 419 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 221/347 (63%), Positives = 279/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M D+ Sbjct: 73 GLEELEMGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 132 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WK +GL+DDER +I R+LG+F++++SLVANN+VLAIYR ++NPECRQYLLRQAFEEA Sbjct: 133 ATWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYLLRQAFEEA 192 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ AKA W+L T +LS P+F TGT + DQE Sbjct: 193 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKATWSLGKTHSLSDPNFRTGTLETDQEL 252 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 253 LRNLIGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 312 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENP LWT EFQQ++ M+ E T LEIAYA +TMP+G +G+NA E+Y+QFI NRR + Sbjct: 313 KLENPLLWTPEFQQEAIQMILEGTELEIAYARDTMPRGVLGMNAAMMEEYLQFICNRRLN 372 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 373 QVGLPEQFPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 419 >gi|15596352|ref|NP_249846.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa PAO1] gi|107100605|ref|ZP_01364523.1| hypothetical protein PaerPA_01001630 [Pseudomonas aeruginosa PACS2] gi|116049087|ref|YP_792111.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa UCBPP-PA14] gi|152988648|ref|YP_001349579.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa PA7] gi|218892881|ref|YP_002441750.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa LESB58] gi|254239525|ref|ZP_04932847.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192] gi|296390475|ref|ZP_06879950.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa PAb1] gi|313106126|ref|ZP_07792381.1| NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa 39016] gi|9947077|gb|AAG04544.1|AE004545_7 NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa PAO1] gi|115584308|gb|ABJ10323.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa UCBPP-PA14] gi|126192903|gb|EAZ56966.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192] gi|150963806|gb|ABR85831.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa PA7] gi|187939552|gb|ACD38699.1| ribonucleoside reductase small chain [Pseudomonas aeruginosa] gi|218773109|emb|CAW28921.1| NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa LESB58] gi|310878883|gb|EFQ37477.1| NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa 39016] Length = 415 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 215/347 (61%), Positives = 278/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLDDLEGSAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKSK+GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKSKDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P F TGT + D++F Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPMFQTGTPETDRQF 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW + + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|170720377|ref|YP_001748065.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida W619] gi|169758380|gb|ACA71696.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida W619] Length = 416 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 214/347 (61%), Positives = 276/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT + D+E Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 249 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 309 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 310 KIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 369 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|229592166|ref|YP_002874285.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens SBW25] gi|229364032|emb|CAY51597.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas fluorescens SBW25] Length = 416 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 215/347 (61%), Positives = 276/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT + D+E Sbjct: 190 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 249 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 250 LRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 309 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 310 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 369 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|26987912|ref|NP_743337.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida KT2440] gi|167035231|ref|YP_001670462.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida GB-1] gi|24982621|gb|AAN66801.1|AE016309_3 ribonucleoside reductase, beta subunit [Pseudomonas putida KT2440] gi|166861719|gb|ABZ00127.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida GB-1] gi|313497534|gb|ADR58900.1| NrdB [Pseudomonas putida BIRD-1] Length = 416 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 214/347 (61%), Positives = 276/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT + D+E Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 249 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 309 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 310 KIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 369 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|325272776|ref|ZP_08139120.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp. TJI-51] gi|324102083|gb|EGB99585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp. TJI-51] Length = 416 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 214/347 (61%), Positives = 276/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT + D+E Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 249 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 309 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 310 KIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 369 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|146308172|ref|YP_001188637.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas mendocina ymp] gi|145576373|gb|ABP85905.1| Ribonucleoside-diphosphate reductase [Pseudomonas mendocina ymp] Length = 416 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 214/347 (61%), Positives = 278/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLDDLEGAAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F TGT + D++F Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFNTGTPETDRQF 249 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 250 LKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQI 309 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW + + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 310 KIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 369 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|320323423|gb|EFW79511.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. glycinea str. B076] gi|320327620|gb|EFW83632.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. glycinea str. race 4] gi|330876273|gb|EGH10422.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. glycinea str. race 4] Length = 415 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 214/347 (61%), Positives = 276/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C+NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT + D+E Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|104780527|ref|YP_607025.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas entomophila L48] gi|95109514|emb|CAK14215.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas entomophila L48] Length = 415 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 214/347 (61%), Positives = 275/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKSMDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT + D+E Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDKEL 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|330983931|gb|EGH82034.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. lachrymans str. M301315] Length = 388 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 218/355 (61%), Positives = 283/355 (79%), Gaps = 8/355 (2%) Query: 6 GLSPIQAGEK--------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 G I AGE+ RV V K+M+NAR+DVNQL+P KY WAW+KYL C+NHWMP Sbjct: 34 GEMDIGAGERELEEGRQNRVQVGQKQMINARADVNQLVPFKYEWAWQKYLDGCSNHWMPQ 93 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV M D+ALWK NGLTDDERL++KRNLG+F++++SLVANN+VLA+YR ++NPECRQY+ Sbjct: 94 EVNMSADIALWKDPNGLTDDERLILKRNLGYFSTADSLVANNLVLAVYRLITNPECRQYI 153 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 LRQAFEEA+H+H +QY + SLGLD+GE+FNMY+EVPS+ KA W++++ ++ P+F TG Sbjct: 154 LRQAFEEAIHTHAYQYCVESLGLDDGEIFNMYQEVPSVARKAAWSIKHMDAITDPAFQTG 213 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 T +AD FL++L +Y V EG++FY GF Q LS+GR NK+VG+AEQ+QYI+RDES+HLNF Sbjct: 214 TVEADTTFLKNLIAYYCVTEGIFFYCGFTQTLSMGRRNKLVGVAEQFQYILRDESMHLNF 273 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 GID+INQIKIENPHLWT E ++++ M+ + T LEIAYA +TMP+G +G+NA E+Y+Q Sbjct: 274 GIDMINQIKIENPHLWTDELKREATVMIIQGTQLEIAYARDTMPRGVLGMNAAMMEEYLQ 333 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 FIANRR QIGL ++ +NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 334 FIANRRLTQIGLPEVYAGAKNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 388 >gi|71737432|ref|YP_275887.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485935|ref|ZP_05639976.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628680|ref|ZP_06461634.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648392|ref|ZP_06479735.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aesculi str. 2250] gi|298487941|ref|ZP_07005980.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302184861|ref|ZP_07261534.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae 642] gi|71557985|gb|AAZ37196.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157492|gb|EFH98573.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866023|gb|EGH00732.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330896997|gb|EGH28545.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. japonica str. M301072PT] gi|330986742|gb|EGH84845.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010341|gb|EGH90397.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 415 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 214/347 (61%), Positives = 275/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT + D+E Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|330504346|ref|YP_004381215.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas mendocina NK-01] gi|328918632|gb|AEB59463.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas mendocina NK-01] Length = 416 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 214/347 (61%), Positives = 277/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLDDLEGASARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P F TGT + D++F Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPQFQTGTPETDRQF 249 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQI 309 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW + + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 310 KIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 369 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|226945386|ref|YP_002800459.1| ribonucleotide-diphosphate reductase subunit beta [Azotobacter vinelandii DJ] gi|226720313|gb|ACO79484.1| Ribonucleoside-diphosphate reductase beta subunit [Azotobacter vinelandii DJ] Length = 416 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 214/347 (61%), Positives = 276/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP E+ M D+ Sbjct: 70 GLEDLEGAAARVRVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEINMNADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF++++SLVANN+ LAIYR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSADGLTEDERRIIKRNLGFFSTADSLVANNLALAIYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F TGT + D++ Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFDTGTPETDRQL 249 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQI 309 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 310 KIENPHLWDAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNATMMEDYLKFIANRRLS 369 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 370 QLGLPEQYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|331006663|ref|ZP_08329944.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC1989] gi|330419531|gb|EGG93916.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC1989] Length = 444 Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust. Identities = 214/347 (61%), Positives = 279/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ ++ G RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 98 GIEELEMGAARVGVDEKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 157 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 +LWK +GL+DDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEEA Sbjct: 158 SLWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFEEA 217 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P+F TGT + DQE Sbjct: 218 IHTHAYQYCIESLGMDEGEIFNMYREVPSVANKAAWSIAHTQGISDPTFNTGTTETDQEL 277 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 278 LRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDIINQI 337 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLWT+EF+ + M+ E T LEIAYA +TMP+G +G+NA E+Y+QFI+NRR Sbjct: 338 KLENPHLWTEEFKAEVTQMVLEGTELEIAYARDTMPRGVLGMNAAMMEEYLQFISNRRLA 397 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL + +NPFPWMSE++DL+KEKNFFETRV EYQ G L W+ Sbjct: 398 QLGLTEQYPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWE 444 >gi|119478322|ref|ZP_01618353.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2143] gi|119448662|gb|EAW29907.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2143] Length = 422 Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust. Identities = 213/348 (61%), Positives = 281/348 (80%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 GL ++ G R+ V+DK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D Sbjct: 75 AGLEELELGAARLTVEDKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTAD 134 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGL+DDER ++ R+LG+F++++SLVANN++LAIYRH++NPECRQYLLRQAFEE Sbjct: 135 VALWKDPNGLSDDERRIVMRSLGYFSTADSLVANNLILAIYRHITNPECRQYLLRQAFEE 194 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY + SL +DEGE+FNMYRE+PSI KA W+L++T +LS P+F TGT + DQE Sbjct: 195 AIHTHAYQYCVESLAMDEGEVFNMYRELPSIAKKAAWSLRHTHSLSDPNFKTGTPETDQE 254 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQ Sbjct: 255 LLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQ 314 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK+ENP LW+++FQQ+ M+ E T LEI YA ++MP+G +G+NA E+Y+QFI+NRR Sbjct: 315 IKLENPQLWSEKFQQEIIQMILEGTQLEIEYARDSMPRGVLGMNAAMMEEYLQFISNRRL 374 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +Q+GL ++ +NPFPWMSE++DL+KEKNFFETRV EYQ G L W+ Sbjct: 375 NQLGLPEQYQGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALNWE 422 >gi|160871658|ref|ZP_02061790.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella grylli] gi|159120457|gb|EDP45795.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella grylli] Length = 362 Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust. Identities = 216/348 (62%), Positives = 277/348 (79%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G RV+VDDK+++N R+D+NQL+P KY WAWEKYL+AC NHWMP E+ M D Sbjct: 14 TGLETLEVGAARVHVDDKKIINCRADLNQLVPFKYKWAWEKYLAACANHWMPQEINMSAD 73 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALW+ GL +DERL+++R+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 74 IALWRDAKGLREDERLIVERSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 133 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY+I SLG+DE +FNMYRE+P++ K WAL +TQ+L+ P+F TGT + DQ Sbjct: 134 ALHTHAYQYVIESLGMDEARIFNMYRELPTVAKKTEWALPFTQSLADPNFRTGTPETDQR 193 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+DL FYVVFEG++FY GF+QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQ Sbjct: 194 LLRDLIAFYVVFEGIFFYVGFSQILSMGRQNKMTGTAEQFQYILRDESMHLNFGIDVINQ 253 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK+ENPHLWT EF++ ++ E LE YA +T+P+G +GLNA Y++FI NRR Sbjct: 254 IKLENPHLWTPEFKRYVINLIKEGVDLEYQYALDTLPRGILGLNANLMWDYLRFIGNRRF 313 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL + NP PWMSE+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 314 TQIGLAEQYPGVSNPLPWMSEIIDLKKEKNFFETRVTEYQTGGSLNWD 361 >gi|76808925|ref|YP_334881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 1710b] gi|254208116|ref|ZP_04914466.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei JHU] gi|76578378|gb|ABA47853.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia pseudomallei 1710b] gi|147752010|gb|EDK59077.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei JHU] Length = 376 Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust. Identities = 219/345 (63%), Positives = 271/345 (78%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 32 SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 91 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 92 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 151 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+FTTGT +ADQ+ L+ Sbjct: 152 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 211 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ Sbjct: 212 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 271 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QI Sbjct: 272 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 331 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 332 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 376 >gi|254282900|ref|ZP_04957868.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR51-B] gi|219679103|gb|EED35452.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR51-B] Length = 421 Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust. Identities = 215/347 (61%), Positives = 278/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M D+ Sbjct: 75 GLEELEMGAQRVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 134 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WKS +GLT+DER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQAFEEA Sbjct: 135 ATWKSSDGLTEDERRIVLRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQAFEEA 194 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEG +FNMYREVPS+ KA W+L +T +LS P+F TGT + DQ+ Sbjct: 195 IHTHAYQYCIESLGMDEGAVFNMYREVPSVARKATWSLSHTHSLSDPNFKTGTVETDQQL 254 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 255 LRNLVGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 314 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLWT EFQ++ M+ E T LEI YA +TMP+G +G+NA E+Y+QFI NRR + Sbjct: 315 KLENPHLWTAEFQEEVVQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFICNRRLN 374 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL + +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 375 QLGLSEQYPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 421 >gi|167825888|ref|ZP_02457359.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 9] gi|167924622|ref|ZP_02511713.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei BCC215] gi|254180586|ref|ZP_04887184.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1655] gi|254190977|ref|ZP_04897483.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|157938651|gb|EDO94321.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|184211125|gb|EDU08168.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1655] Length = 372 Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust. Identities = 219/345 (63%), Positives = 271/345 (78%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 28 SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 87 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 88 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 147 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+FTTGT +ADQ+ L+ Sbjct: 148 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 207 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ Sbjct: 208 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 267 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QI Sbjct: 268 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 327 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 328 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372 >gi|121598515|ref|YP_991780.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei SAVP1] gi|124385654|ref|YP_001027273.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei NCTC 10229] gi|126439848|ref|YP_001060484.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 668] gi|126451145|ref|YP_001082790.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei NCTC 10247] gi|126453692|ref|YP_001067748.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 1106a] gi|134280207|ref|ZP_01766918.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 305] gi|166998593|ref|ZP_02264451.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei PRL-20] gi|167721297|ref|ZP_02404533.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei DM98] gi|167740266|ref|ZP_02413040.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 14] gi|167817486|ref|ZP_02449166.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 91] gi|167847373|ref|ZP_02472881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei B7210] gi|167895962|ref|ZP_02483364.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 7894] gi|167904346|ref|ZP_02491551.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei NCTC 13177] gi|167912606|ref|ZP_02499697.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 112] gi|217420440|ref|ZP_03451945.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 576] gi|226196790|ref|ZP_03792369.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|237813879|ref|YP_002898330.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei MSHR346] gi|238561262|ref|ZP_00442338.2| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei GB8 horse 4] gi|242316188|ref|ZP_04815204.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1106b] gi|254178822|ref|ZP_04885476.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei ATCC 10399] gi|254199038|ref|ZP_04905453.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei S13] gi|254202774|ref|ZP_04909137.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei FMH] gi|254259655|ref|ZP_04950709.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1710a] gi|254299327|ref|ZP_04966777.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 406e] gi|121227325|gb|ABM49843.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei SAVP1] gi|124293674|gb|ABN02943.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei NCTC 10229] gi|126219341|gb|ABN82847.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 668] gi|126227334|gb|ABN90874.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1106a] gi|126244015|gb|ABO07108.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei NCTC 10247] gi|134248214|gb|EBA48297.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 305] gi|147747021|gb|EDK54098.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei FMH] gi|157808756|gb|EDO85926.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 406e] gi|160694736|gb|EDP84744.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei ATCC 10399] gi|169656868|gb|EDS88265.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei S13] gi|217395852|gb|EEC35869.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 576] gi|225931050|gb|EEH27058.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|237506031|gb|ACQ98349.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei MSHR346] gi|238524965|gb|EEP88395.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei GB8 horse 4] gi|242139427|gb|EES25829.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1106b] gi|243065276|gb|EES47462.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei PRL-20] gi|254218344|gb|EET07728.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1710a] Length = 403 Score = 491 bits (1264), Expect = e-137, Method: Compositional matrix adjust. Identities = 219/345 (63%), Positives = 271/345 (78%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 59 SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 118 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 119 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 178 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+FTTGT +ADQ+ L+ Sbjct: 179 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 238 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ Sbjct: 239 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 298 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QI Sbjct: 299 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 358 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 359 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|53720599|ref|YP_109585.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei K96243] gi|53726102|ref|YP_104055.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei ATCC 23344] gi|52211013|emb|CAH37001.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia pseudomallei K96243] gi|52429525|gb|AAU50118.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei ATCC 23344] Length = 350 Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust. Identities = 222/352 (63%), Positives = 274/352 (77%), Gaps = 2/352 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MA N S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 1 MAPNA--SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 58 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 59 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 118 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+FTTGT + Sbjct: 119 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLE 178 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 ADQ+ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID Sbjct: 179 ADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGID 238 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+ Sbjct: 239 LINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFIS 298 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 299 NRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 350 >gi|88705571|ref|ZP_01103281.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter litoralis KT71] gi|88700084|gb|EAQ97193.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter litoralis KT71] Length = 469 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 216/347 (62%), Positives = 278/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G RV++D+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M D+ Sbjct: 123 GLEELEMGASRVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 182 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WK+ GLTDDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEEA Sbjct: 183 ATWKNPEGLTDDERRIVLRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFEEA 242 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +T LS P+F TGT ++DQ Sbjct: 243 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSISHTHELSDPNFRTGTLESDQTL 302 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 303 LRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 362 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENP LWT+EF+Q++ M+ E T LEI YA +TMP+G +G+NA E+Y+QFIANRR Sbjct: 363 KLENPQLWTEEFKQEAIQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIANRRLS 422 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 423 QIGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 469 >gi|325519933|gb|EGC99191.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp. TJI49] Length = 403 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 218/352 (61%), Positives = 272/352 (77%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 VAPQASAVPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT + Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 231 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 ADQ+ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID Sbjct: 232 ADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGID 291 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+ Sbjct: 292 LINQIKLENPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFIS 351 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 352 NRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|161525957|ref|YP_001580969.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia multivorans ATCC 17616] gi|160343386|gb|ABX16472.1| Ribonucleoside-diphosphate reductase [Burkholderia multivorans ATCC 17616] Length = 396 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 217/344 (63%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 53 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 112 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 113 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 172 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 173 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 232 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 233 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 292 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIG Sbjct: 293 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 352 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 353 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 396 >gi|189349324|ref|YP_001944952.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia multivorans ATCC 17616] gi|221213238|ref|ZP_03586213.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD1] gi|189333346|dbj|BAG42416.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia multivorans ATCC 17616] gi|221166690|gb|EED99161.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD1] Length = 403 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 217/344 (63%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|254253304|ref|ZP_04946622.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia dolosa AUO158] gi|124895913|gb|EAY69793.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia dolosa AUO158] Length = 403 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 217/344 (63%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIG Sbjct: 300 NPHLWTPEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|83719302|ref|YP_441701.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis E264] gi|83653127|gb|ABC37190.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia thailandensis E264] Length = 377 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 218/345 (63%), Positives = 270/345 (78%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 33 SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 92 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 93 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 152 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 153 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLK 212 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ Sbjct: 213 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 272 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QI Sbjct: 273 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 332 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 333 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 377 >gi|221202418|ref|ZP_03575450.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2M] gi|221208122|ref|ZP_03581127.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2] gi|221172025|gb|EEE04467.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2] gi|221177695|gb|EEE10110.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2M] Length = 372 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 217/344 (63%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 29 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 88 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 89 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 148 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 149 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 208 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 209 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 268 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIG Sbjct: 269 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 328 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 329 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372 >gi|30250346|ref|NP_842416.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas europaea ATCC 19718] gi|30181141|emb|CAD86334.1| Ribonucleotide reductase [Nitrosomonas europaea ATCC 19718] Length = 382 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 216/338 (63%), Positives = 271/338 (80%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M D+ALWK NGL Sbjct: 45 RRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNGL 104 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QYI Sbjct: 105 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQYI 164 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + S+GLDEGE+FN Y E+ SI K + + + TL+ PSF TGT + DQ+ L+ L VF Sbjct: 165 VESIGLDEGEIFNAYHEIGSIRDKDEFLIPFIDTLTDPSFRTGTLETDQQLLKSLIVFAC 224 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVINQIK+ENPHLWT Sbjct: 225 IMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKLENPHLWT 284 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 +EF+++ ++ +A LE YA +TMP+G +GLNAP ++Y++FI NRR HQIGL+PLF Sbjct: 285 REFREEISALMRKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRFIINRRSHQIGLDPLFP 344 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWMSE+IDLKKEKNFFETRV EYQ G L WD Sbjct: 345 EAGNPFPWMSEMIDLKKEKNFFETRVIEYQTGGVLSWD 382 >gi|82703584|ref|YP_413150.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosospira multiformis ATCC 25196] gi|82411649|gb|ABB75758.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC 25196] Length = 408 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 217/338 (64%), Positives = 272/338 (80%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV+V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP E+ M D+ALWK NGL Sbjct: 71 RRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEINMSRDIALWKDPNGL 130 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QYI Sbjct: 131 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHVTNPECRQYLLRQAFEEAIHTHAYQYI 190 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDEGE+FN Y EV SI K + + + TL+ PSF TGT +ADQ+ L+ L VF Sbjct: 191 VESLGLDEGEIFNAYHEVRSIREKDEFLIPFIDTLTDPSFRTGTLEADQKLLKSLIVFAC 250 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDV+NQIK+ENPHLWT Sbjct: 251 IMEGLFFYVGFIQILALGRQNKMTGSAEQYQYILRDESMHCNFGIDVVNQIKMENPHLWT 310 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 KEF+ + ++ +A LE YA +TMP+G +GLNAP ++Y+++IANRRC QIGL+ L+ Sbjct: 311 KEFRSEISALMQKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRYIANRRCQQIGLDILYP 370 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 371 GASNPFPWMSEMIDLKKEKNFFETRVTEYQTGGVLNWD 408 >gi|312795100|ref|YP_004028022.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia rhizoxinica HKI 454] gi|312166875|emb|CBW73878.1| Ribonucleoside-diphosphate reductase beta chain (EC 1.17.4.1) [Burkholderia rhizoxinica HKI 454] Length = 416 Score = 488 bits (1257), Expect = e-136, Method: Compositional matrix adjust. Identities = 220/345 (63%), Positives = 268/345 (77%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 SP A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 72 SPAPAPEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 131 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 132 WKDPNGLTDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 191 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ PSF TGT +ADQ+ L+ Sbjct: 192 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPSFKTGTLEADQKLLK 251 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ Sbjct: 252 SLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 311 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT F+++ + A LE YA +TMP+G +GLNA + Y++FI NRRC QI Sbjct: 312 ENPHLWTPAFREEICGLFKHAVELEYRYAEDTMPRGVLGLNAGMFKSYLRFICNRRCQQI 371 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GLEPLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 372 GLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416 >gi|114332419|ref|YP_748641.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas eutropha C91] gi|114309433|gb|ABI60676.1| Ribonucleoside-diphosphate reductase [Nitrosomonas eutropha C91] Length = 377 Score = 488 bits (1257), Expect = e-136, Method: Compositional matrix adjust. Identities = 215/338 (63%), Positives = 272/338 (80%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M D+ALWK NGL Sbjct: 40 RRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNGL 99 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QYI Sbjct: 100 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQYI 159 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + S+GLDEGE+FN Y E+ SI K + + + TL++P+F TGT + DQ+ L+ L VF Sbjct: 160 VESIGLDEGEIFNAYHEIKSIRDKDEFLIPFIDTLTNPTFQTGTLETDQQLLKSLIVFAC 219 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QILSLGR NKM G AEQYQYI+RDES+H NFGIDVINQIK+ENPHLWT Sbjct: 220 IMEGLFFYVGFVQILSLGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKLENPHLWT 279 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 +EF+++ ++ +A LE YA +TMP+G +GLNAP ++Y++FI NRR HQIGL+PLF Sbjct: 280 REFREEISALMRKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRFIINRRSHQIGLDPLFP 339 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 340 EAGNPFPWMSEMVDLKKEKNFFETRVIEYQTGGVLSWD 377 >gi|167580513|ref|ZP_02373387.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis TXDOH] gi|167618621|ref|ZP_02387252.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis Bt4] gi|257137870|ref|ZP_05586132.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis E264] Length = 350 Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust. Identities = 221/352 (62%), Positives = 273/352 (77%), Gaps = 2/352 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MA N S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 1 MAPNA--SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 58 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 59 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 118 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT + Sbjct: 119 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 178 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 ADQ+ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID Sbjct: 179 ADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGID 238 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+ Sbjct: 239 LINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFIS 298 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 299 NRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 350 >gi|330892405|gb|EGH25066.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. mori str. 301020] Length = 415 Score = 488 bits (1255), Expect = e-136, Method: Compositional matrix adjust. Identities = 212/347 (61%), Positives = 274/347 (78%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNKTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVA+N+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVAHNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT + D+E Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLS 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|206561765|ref|YP_002232530.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia J2315] gi|254246390|ref|ZP_04939711.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia cenocepacia PC184] gi|124871166|gb|EAY62882.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia cenocepacia PC184] gi|198037807|emb|CAR53751.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia cenocepacia J2315] Length = 403 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 216/344 (62%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|329893650|ref|ZP_08269784.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC3088] gi|328923577|gb|EGG30889.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC3088] Length = 432 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 213/347 (61%), Positives = 276/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP E+ M D+ Sbjct: 86 GLEELELGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEINMTADV 145 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WKS + L+DDER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQAFEEA Sbjct: 146 ATWKSADVLSDDERRIVMRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQAFEEA 205 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W+L +T +LS P+F TGT + DQ Sbjct: 206 IHTHAYQYCIESLGMDEGEVFNMYREIPSVAKKATWSLSHTHSLSDPNFKTGTTENDQTL 265 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 266 LRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 325 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLWT++FQ++ ML E T +EI YA +TMP+G +G+NA E+Y+QFI NRR Sbjct: 326 KLENPHLWTEDFQKEVIQMLLEGTQIEIEYARDTMPRGVLGMNAAMMEEYLQFICNRRLA 385 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 386 QLGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 432 >gi|170699976|ref|ZP_02891003.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria IOP40-10] gi|170135124|gb|EDT03425.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria IOP40-10] Length = 403 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 215/344 (62%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|209521089|ref|ZP_03269819.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160] gi|209498472|gb|EDZ98597.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160] Length = 411 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 219/358 (61%), Positives = 272/358 (75%), Gaps = 7/358 (1%) Query: 2 ANNTGLSPIQAGEK-------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54 AN+ ++P+ RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHW Sbjct: 54 ANDIAVAPVAHAGNAAAASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHW 113 Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 MP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECR Sbjct: 114 MPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 173 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P+F Sbjct: 174 QFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAF 233 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 TGT +ADQ L+ L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H Sbjct: 234 KTGTLEADQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMH 293 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 NFGID+INQIK+ENPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Sbjct: 294 CNFGIDLINQIKLENPHLWTAEFRAEIRAIFQQAVELEYRYAEDTMPRGVLGLNASMFKS 353 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Y++FI NRRC QIGL+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 354 YLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411 >gi|295677726|ref|YP_003606250.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002] gi|295437569|gb|ADG16739.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002] Length = 411 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 219/358 (61%), Positives = 272/358 (75%), Gaps = 7/358 (1%) Query: 2 ANNTGLSPIQAGEK-------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54 AN+ ++P+ RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHW Sbjct: 54 ANDIAVAPVAHAGNAAAASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHW 113 Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 MP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECR Sbjct: 114 MPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 173 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P+F Sbjct: 174 QFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAF 233 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 TGT +ADQ L+ L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H Sbjct: 234 KTGTLEADQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMH 293 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 NFGID+INQIK+ENPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Sbjct: 294 CNFGIDLINQIKLENPHLWTAEFRAEIRAIFQQAVELEYRYAEDTMPRGVLGLNASMFKS 353 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Y++FI NRRC QIGL+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 354 YLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411 >gi|115350552|ref|YP_772391.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia ambifaria AMMD] gi|172059584|ref|YP_001807236.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia ambifaria MC40-6] gi|115280540|gb|ABI86057.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria AMMD] gi|171992101|gb|ACB63020.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MC40-6] Length = 403 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 215/344 (62%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|78065156|ref|YP_367925.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp. 383] gi|77965901|gb|ABB07281.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383] Length = 403 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 215/344 (62%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|171318520|ref|ZP_02907672.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5] gi|171096306|gb|EDT41212.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5] Length = 403 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 215/344 (62%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|307731037|ref|YP_003908261.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003] gi|307585572|gb|ADN58970.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003] Length = 411 Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust. Identities = 219/358 (61%), Positives = 271/358 (75%), Gaps = 7/358 (1%) Query: 2 ANNTGLSPIQAG-------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54 AN+ ++P+ G E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHW Sbjct: 54 ANDIAVAPVARGAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHW 113 Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 MP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECR Sbjct: 114 MPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 173 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P F Sbjct: 174 QFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGF 233 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 TGT + DQ L+ L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H Sbjct: 234 KTGTLETDQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMH 293 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 NFGID+INQIK+ENP LWT EF+ + R + +A LE YA +TMP+G +GLNA + Sbjct: 294 CNFGIDLINQIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKS 353 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Y++FI NRRC QIGL+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 354 YLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 411 >gi|167564160|ref|ZP_02357076.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia oklahomensis EO147] Length = 369 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 217/345 (62%), Positives = 269/345 (77%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 25 SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 84 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 85 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 144 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 145 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLK 204 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ Sbjct: 205 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 264 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QI Sbjct: 265 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 324 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 325 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 369 >gi|170731918|ref|YP_001763865.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia MC0-3] gi|169815160|gb|ACA89743.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia MC0-3] Length = 403 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 215/344 (62%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|119713586|gb|ABL97637.1| ribonucleotide-diphosphate reductase beta subunit [uncultured marine bacterium EB0_39H12] Length = 412 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 213/337 (63%), Positives = 270/337 (80%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV VDDK M+N R+D+NQL+P KY WAW+KYL NHWMP EV M D+ALWKS +GLT Sbjct: 76 RVQVDDKAMINCRADLNQLVPFKYDWAWQKYLDGSANHWMPQEVNMTADIALWKSNDGLT 135 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++ RNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ FEEA+H+H +QY I Sbjct: 136 EDERTIVMRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQGFEEAIHTHAYQYCI 195 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLG+DEG +FNMYRE+PS+ KA+W L+YT+ +S P FTTGT + D+ L++L FY V Sbjct: 196 ESLGMDEGAIFNMYREIPSVAKKASWGLKYTKEISDPGFTTGTDETDKLLLKNLIAFYCV 255 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID+INQIK+ENPHLW + Sbjct: 256 LEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQIKLENPHLWDE 315 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + + ++ M+ E T LEI YA +TMP+G +G+NA E+Y+QFIANRR QIGLE F+ Sbjct: 316 QMRHEAAQMILEGTELEIQYARDTMPRGILGMNAGMMEEYLQFIANRRLVQIGLEEEFEG 375 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 376 ASNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 412 >gi|107021673|ref|YP_620000.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia AU 1054] gi|116688619|ref|YP_834242.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia HI2424] gi|105891862|gb|ABF75027.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia AU 1054] gi|116646708|gb|ABK07349.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia HI2424] Length = 382 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 215/344 (62%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 39 PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 98 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 99 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 158 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 159 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 218 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 219 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 278 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 279 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 338 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 339 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 382 >gi|134294683|ref|YP_001118418.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia vietnamiensis G4] gi|134137840|gb|ABO53583.1| Ribonucleoside-diphosphate reductase [Burkholderia vietnamiensis G4] Length = 403 Score = 484 bits (1246), Expect = e-135, Method: Compositional matrix adjust. Identities = 215/344 (62%), Positives = 268/344 (77%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKHAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|167574685|ref|ZP_02367559.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia oklahomensis C6786] Length = 369 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 217/345 (62%), Positives = 268/345 (77%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 25 SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 84 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 85 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 144 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT ADQ+ L+ Sbjct: 145 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLVADQKLLK 204 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ Sbjct: 205 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 264 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QI Sbjct: 265 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 324 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 325 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 369 >gi|323527395|ref|YP_004229548.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001] gi|323384397|gb|ADX56488.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001] Length = 414 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 216/341 (63%), Positives = 265/341 (77%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK Sbjct: 74 VSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDP 133 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 134 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 193 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 QYI+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P+F TGT +ADQ L+ L V Sbjct: 194 QYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIV 253 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP Sbjct: 254 FACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQ 313 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 LWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+P Sbjct: 314 LWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDP 373 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 374 LYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 414 >gi|238026167|ref|YP_002910398.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia glumae BGR1] gi|237875361|gb|ACR27694.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia glumae BGR1] Length = 407 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 212/339 (62%), Positives = 268/339 (79%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 ++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG Sbjct: 69 QERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 128 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER +++RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 129 LTEDERRIVRRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDEGE+FN Y EV SI K + + + TL+ P+F TGT+DADQ+ L+ L VF Sbjct: 189 IVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIHTLTDPAFVTGTQDADQKLLKSLIVFA 248 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW Sbjct: 249 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 308 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EF+ + R + A LE YA +TMP+G +GLNA + Y++FIANRRC QIGL+PL+ Sbjct: 309 TPEFRAEIRELFKRAVELEYRYAEDTMPRGVLGLNAAMFKSYLRFIANRRCQQIGLDPLY 368 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 369 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407 >gi|296160506|ref|ZP_06843322.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1] gi|295889255|gb|EFG69057.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1] Length = 415 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 216/349 (61%), Positives = 265/349 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M Sbjct: 67 NAAAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSR 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFE Sbjct: 127 DIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + Y L+ P+F TGT +ADQ Sbjct: 187 EAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQ 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 L+ L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN Sbjct: 247 TLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLIN 306 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENP LWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRR Sbjct: 307 QIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRR 366 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 367 CQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 415 >gi|187925407|ref|YP_001897049.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia phytofirmans PsJN] gi|187716601|gb|ACD17825.1| Ribonucleoside-diphosphate reductase [Burkholderia phytofirmans PsJN] Length = 415 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 218/362 (60%), Positives = 271/362 (74%), Gaps = 11/362 (3%) Query: 2 ANNTGLSPIQ-----------AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSAC 50 AN+ ++P+ E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C Sbjct: 54 ANDMAVAPVAHVTHAAAETAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGC 113 Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 NHWMP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ Sbjct: 114 ANHWMPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITA 173 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + Y L+ Sbjct: 174 PECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLT 233 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 P+F TGT +ADQ L+ L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RD Sbjct: 234 DPAFKTGTLEADQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRD 293 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 ES+H NFGID+INQIK+ENP LWT EF+ + R + +A LE YA +TMP+G +GLNA Sbjct: 294 ESMHCNFGIDLINQIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNAS 353 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + Y++FI NRRC QIGL+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L Sbjct: 354 MFKSYLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALT 413 Query: 351 WD 352 W+ Sbjct: 414 WE 415 >gi|302877617|ref|YP_003846181.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans ES-2] gi|302580406|gb|ADL54417.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans ES-2] Length = 365 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 215/337 (63%), Positives = 271/337 (80%), Gaps = 1/337 (0%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R+ V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP EV M D+ALWKS + L+ Sbjct: 30 RIRVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEVNMTADIALWKS-DKLS 88 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 DDER +IKRNLGFF +++SL ANNIVL YRH++NPECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 89 DDERRLIKRNLGFFTTADSLAANNIVLGSYRHITNPECRQFLLRQAFEEAIHTHAYQYIV 148 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLDEGE+FNMY EVPSI K + L Y L++P F TGT +ADQ L+ L VF + Sbjct: 149 ESLGLDEGEIFNMYHEVPSIRNKDEFLLPYIDVLTNPEFKTGTPEADQALLRSLIVFACI 208 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+HLNFG+D+INQIK+ENPHLWT Sbjct: 209 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHLNFGVDLINQIKMENPHLWTA 268 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 F+++ R ++ + LE AYA +TMP+G +GLNA ++Y++FIANRRC QIG++ L++ Sbjct: 269 AFREEIRGLMQKGVELEYAYAEDTMPRGILGLNATMFKEYLRFIANRRCQQIGVDILYQG 328 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWMSE+IDLKKEKNFFE+RVTEYQ G L WD Sbjct: 329 ATNPFPWMSEMIDLKKEKNFFESRVTEYQTGGTLSWD 365 >gi|91785256|ref|YP_560462.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia xenovorans LB400] gi|91689210|gb|ABE32410.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans LB400] Length = 411 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 218/362 (60%), Positives = 271/362 (74%), Gaps = 11/362 (3%) Query: 2 ANNTGLSPIQ-----------AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSAC 50 AN+ ++P+ E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C Sbjct: 50 ANDIAVAPVAHVTHAAAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGC 109 Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 NHWMP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ Sbjct: 110 ANHWMPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITA 169 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + Y L+ Sbjct: 170 PECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLT 229 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 P+F TGT +ADQ L+ L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RD Sbjct: 230 DPAFKTGTLEADQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRD 289 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 ES+H NFGID+INQIK+ENP LWT EF+ + R + +A LE YA +TMP+G +GLNA Sbjct: 290 ESMHCNFGIDLINQIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNAS 349 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + Y++FI NRRC QIGL+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L Sbjct: 350 MFKSYLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALT 409 Query: 351 WD 352 W+ Sbjct: 410 WE 411 >gi|170695324|ref|ZP_02886470.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M] gi|170139724|gb|EDT07906.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M] Length = 414 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 215/339 (63%), Positives = 263/339 (77%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 76 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 135 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 136 LTEDERRVVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 195 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P F TGT + DQ L+ L VF Sbjct: 196 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGFKTGTLETDQTLLRSLIVFA 255 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW Sbjct: 256 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 315 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+PL+ Sbjct: 316 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 375 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 376 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 414 >gi|291615085|ref|YP_003525242.1| ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus ES-1] gi|291585197|gb|ADE12855.1| Ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus ES-1] Length = 382 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 211/337 (62%), Positives = 268/337 (79%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R+ V+DKR++N+ +DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK+ NGLT Sbjct: 46 RIRVEDKRIINSSADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSADIALWKNPNGLT 105 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 DDER ++KRNLGFF +++SL ANNI L YRH++NPECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 106 DDERRLVKRNLGFFTTADSLAANNIALGTYRHITNPECRQFLLRQAFEEAIHTHAYQYIV 165 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLDEGE+FNMY EV SI K + L + L++P F TGT + DQ+ L+ L VF + Sbjct: 166 ESLGLDEGEVFNMYHEVQSIRDKDEFLLPFIDVLTNPDFKTGTPENDQKLLRSLIVFACI 225 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+HLNFG+DVINQIK+ENPHLWT Sbjct: 226 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHLNFGVDVINQIKLENPHLWTP 285 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 F+++ R ++ + LE YA +TMP+G +GLNA ++Y++FIANRRC QIG++ L++ Sbjct: 286 AFREEVRGLIQKGVELEYRYAEDTMPRGVLGLNAGMFKEYLRFIANRRCQQIGVDMLYQG 345 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWM+E+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 346 ATNPFPWMAEMIDLKKEKNFFETRVTEYQTGGALSWD 382 >gi|297538242|ref|YP_003674011.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301] gi|297257589|gb|ADI29434.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301] Length = 376 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 213/344 (61%), Positives = 268/344 (77%), Gaps = 2/344 (0%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P +G RVN DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV M D+A W Sbjct: 35 PSHSG--RVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVSMSRDIAQW 92 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K L+DDERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQ FEEA+H+ Sbjct: 93 KDSTALSDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQGFEEAIHT 152 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDE E+FN Y+E+PSI AK ++ + + TL+ P+F TGT +ADQE L+ Sbjct: 153 HAYQYIVESLGLDESEVFNAYQEIPSIKAKDDFLIPFINTLTDPAFKTGTAEADQELLRS 212 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVIN IK+E Sbjct: 213 LIVFACIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDVINTIKLE 272 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+++ +T++ + LE YA TMP+G +GLNA ++Y++FIANRRC QIG Sbjct: 273 NPHLWTAEFREEIKTLMQKGVELEYQYAEATMPRGVLGLNATMFKEYLRFIANRRCTQIG 332 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+ L+ NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD Sbjct: 333 LDVLYPGATNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 376 >gi|167586060|ref|ZP_02378448.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia ubonensis Bu] Length = 403 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 213/337 (63%), Positives = 266/337 (78%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGLT Sbjct: 67 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 126 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 127 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 186 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ L VF + Sbjct: 187 ESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFACI 246 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLWT Sbjct: 247 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 306 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+PL+ Sbjct: 307 EFRAEIRELFKQAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLYPN 366 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 367 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|186477386|ref|YP_001858856.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia phymatum STM815] gi|184193845|gb|ACC71810.1| Ribonucleoside-diphosphate reductase [Burkholderia phymatum STM815] Length = 407 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 215/340 (63%), Positives = 265/340 (77%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E RVNV DKR++N ++DVNQL+P KY WAWEKYLS C NHWMP E+ M D+ALWK N Sbjct: 68 SEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLSGCANHWMPQEINMSRDIALWKDPN 127 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +Q Sbjct: 128 GLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 187 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI+ SLGLDEGE+FN Y EV SI K + + + TL+ P+F TGT +ADQ+ L+ L VF Sbjct: 188 YIVESLGLDEGEIFNAYHEVQSIRDKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVF 247 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHL Sbjct: 248 ACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHL 307 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 WT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI NRRC QIG++PL Sbjct: 308 WTPEFRAEIREIFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGIDPL 367 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 + ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 368 YPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407 >gi|33593916|ref|NP_881560.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella pertussis Tohama I] gi|33598411|ref|NP_886054.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella parapertussis 12822] gi|33603351|ref|NP_890911.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella bronchiseptica RB50] gi|33563990|emb|CAE43255.1| ribonucleoside-diphosphate reductase beta chain [Bordetella pertussis Tohama I] gi|33574540|emb|CAE39187.1| ribonucleoside-diphosphate reductase beta chain [Bordetella parapertussis] gi|33577475|emb|CAE34740.1| ribonucleoside-diphosphate reductase beta chain [Bordetella bronchiseptica RB50] gi|332383335|gb|AEE68182.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella pertussis CS] Length = 398 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 215/351 (61%), Positives = 271/351 (77%), Gaps = 2/351 (0%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + G S AG RV V DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 50 AASLGASDATAG--RVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINM 107 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 108 SRDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 167 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEA+H+H +QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +A Sbjct: 168 FEEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHTGTPEA 227 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ+ L+ L VF + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+ Sbjct: 228 DQKLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDL 287 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 IN IK+ENPHLWT EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIAN Sbjct: 288 INTIKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIAN 347 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RRC QIG+EPLF ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 348 RRCQQIGIEPLFPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398 >gi|255019430|ref|ZP_05291537.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] gi|254971128|gb|EET28583.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] Length = 345 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 210/337 (62%), Positives = 272/337 (80%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV V+DKR++N R+DVNQL+P KY WAW+KYL+AC NHWMP EV M D+ALWK GLT Sbjct: 8 RVRVEDKRIINGRADVNQLVPFKYQWAWDKYLAACANHWMPQEVQMARDIALWKDPKGLT 67 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI+ Sbjct: 68 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 127 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLDEGE+FNMY EVPS+ AK + + + +TL+ P F TGT++ DQ+ L+ L VF + Sbjct: 128 ESLGLDEGEIFNMYHEVPSVRAKDEFLIPFIETLADPDFQTGTRENDQKLLRSLIVFATI 187 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+INQIK+ENP LWT+ Sbjct: 188 MEGLFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWTE 247 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 FQQ+ ++ + LE AYA +TMP+G +GLNAP ++Y+++I NRR QIGL+P ++ Sbjct: 248 GFQQEIVGLIRQGVELECAYADDTMPRGILGLNAPMFKEYVRYIGNRRLSQIGLKPQWEN 307 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +NPFPWMSE++DLKKEKNFFE+RVT+YQ G L WD Sbjct: 308 VQNPFPWMSEMMDLKKEKNFFESRVTDYQTGGALSWD 344 >gi|330815478|ref|YP_004359183.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia gladioli BSR3] gi|327367871|gb|AEA59227.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia gladioli BSR3] Length = 407 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 213/349 (61%), Positives = 270/349 (77%), Gaps = 4/349 (1%) Query: 8 SPIQAG----EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 +P QA ++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 59 APAQASAAGSQERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 118 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFE Sbjct: 119 DIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 178 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGLDEGE+FN Y E+ SI K + + + TL+ P+F TGT +ADQ Sbjct: 179 EAIHTHAYQYIVESLGLDEGEMFNAYHEITSIRDKDEFLIPFIHTLTDPAFVTGTPEADQ 238 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN Sbjct: 239 KLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLIN 298 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FIANRR Sbjct: 299 QIKLENPHLWTPEFRAEIRELFKHAVELEYRYAEDTMPRGVLGLNASMFKSYLRFIANRR 358 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL+ L+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 359 CQQIGLDALYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407 >gi|300703002|ref|YP_003744604.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like [Ralstonia solanacearum CFBP2957] gi|299070665|emb|CBJ41960.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum CFBP2957] Length = 402 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 217/352 (61%), Positives = 267/352 (75%), Gaps = 1/352 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 110 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 111 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 170 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + TL+ PSF TGT + Sbjct: 171 AFEEAIHTHAYQYIVESLGLDEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 230 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ+ L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID Sbjct: 231 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 290 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI Sbjct: 291 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFIC 350 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGLEPLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 351 NRRCQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402 >gi|163854887|ref|YP_001629185.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella petrii DSM 12804] gi|163258615|emb|CAP40914.1| ribonucleoside-diphosphate reductase beta chain [Bordetella petrii] Length = 396 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 209/341 (61%), Positives = 268/341 (78%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ Sbjct: 56 AAAHRVKVADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNP 115 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 116 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 175 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 QYI+ SL LDE E+FN Y EVPSI AK + + + + ++ P+F TGT ++DQ+ L+ L V Sbjct: 176 QYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIEAIADPTFHTGTPESDQKLLKSLIV 235 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN IK+ENPH Sbjct: 236 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPH 295 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 LWT EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANRRC QIG+EP Sbjct: 296 LWTPEFREEIRGLFQKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEP 355 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+ ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 356 LYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 396 >gi|317402620|gb|EFV83180.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter xylosoxidans C54] Length = 399 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 209/341 (61%), Positives = 267/341 (78%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ Sbjct: 59 ATSQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNP 118 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 119 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 178 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +ADQ L+ L V Sbjct: 179 QYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIV 238 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN +K+ENPH Sbjct: 239 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPH 298 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 LWT EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANRRC QIG+EP Sbjct: 299 LWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEP 358 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+ ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 359 LYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399 >gi|325983070|ref|YP_004295472.1| ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212] gi|325532589|gb|ADZ27310.1| Ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212] Length = 381 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 211/346 (60%), Positives = 270/346 (78%), Gaps = 2/346 (0%) Query: 9 PIQAGE--KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P AG +R+ V+DK+++N +DVNQL+P KY WAW+KYL AC NHWMP E+ M D+A Sbjct: 36 PAVAGSANRRIAVEDKQIINCNADVNQLVPFKYKWAWDKYLGACANHWMPQEISMSRDIA 95 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 LW+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+ Sbjct: 96 LWRDPNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAI 155 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 H+H +QYI+ SLGLDEGE+FN Y EV SI K + + + TL++P F TGT + DQ+ L Sbjct: 156 HTHAYQYIVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIDTLTNPHFKTGTLETDQQLL 215 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVINQIK Sbjct: 216 RSLIVFACIMEGLFFYVGFTQILALGRQNKMTGSAEQYQYILRDESMHCNFGIDVINQIK 275 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 +ENP LWTK F+++ ++ +A LE YA +TMP+G +G+NAP ++Y+++IANRRC Q Sbjct: 276 MENPQLWTKAFREEIAALMQKAVALEYRYAEDTMPRGVLGMNAPMFKEYLRYIANRRCQQ 335 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 IGL+ L+ NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD Sbjct: 336 IGLDTLYPNANNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 381 >gi|83746810|ref|ZP_00943858.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia solanacearum UW551] gi|207721465|ref|YP_002251905.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum MolK2] gi|83726579|gb|EAP73709.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia solanacearum UW551] gi|206586625|emb|CAQ17211.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum MolK2] Length = 402 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 216/352 (61%), Positives = 267/352 (75%), Gaps = 1/352 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 110 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 111 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 170 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + Sbjct: 171 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 230 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ+ L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID Sbjct: 231 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 290 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI Sbjct: 291 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFIC 350 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGLEPLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 351 NRRCQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402 >gi|207744360|ref|YP_002260752.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum IPO1609] gi|206595765|emb|CAQ62692.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum IPO1609] Length = 410 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 216/352 (61%), Positives = 267/352 (75%), Gaps = 1/352 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 60 LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 118 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 119 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 178 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + Sbjct: 179 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 238 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ+ L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID Sbjct: 239 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 298 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI Sbjct: 299 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFIC 358 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGLEPLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 359 NRRCQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 410 >gi|187479453|ref|YP_787478.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella avium 197N] gi|115424040|emb|CAJ50593.1| ribonucleoside-diphosphate reductase beta chain [Bordetella avium 197N] Length = 394 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 209/338 (61%), Positives = 266/338 (78%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ NGL Sbjct: 57 QRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 116 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 117 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 176 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +ADQ L+ L VF Sbjct: 177 VESLDLDESEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 236 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN IK+ENPHLWT Sbjct: 237 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPHLWT 296 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANRRC QIG+EPL+ Sbjct: 297 PEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 356 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 357 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 394 >gi|152980709|ref|YP_001354668.1| ribonucleotide-diphosphate reductase subunit beta [Janthinobacterium sp. Marseille] gi|151280786|gb|ABR89196.1| ribonucleoside-diphosphate reductase beta chain [Janthinobacterium sp. Marseille] Length = 392 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 210/338 (62%), Positives = 269/338 (79%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +R++ DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ NGL Sbjct: 55 RRMDAADKRVINGQTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGL 114 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 TDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 115 TDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 174 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDEGE+FN Y EV SI K + + + +TL+ P F TGT + DQ+ L+ L VF Sbjct: 175 VESLGLDEGEIFNAYNEVESIRDKDQFLIPFIETLTDPEFKTGTTENDQKLLRSLIVFAC 234 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GFAQIL+LGR NKM+G AEQYQYI+RDES+H NFGID+IN IK+ENPHLWT Sbjct: 235 LMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHLWT 294 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 +F+++ +T+ A LE YA +TMP+G +GLNAP + Y++FIANRR QIGLEP+F+ Sbjct: 295 PQFREEIKTLFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPMFE 354 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 355 QEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 392 >gi|311103857|ref|YP_003976710.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter xylosoxidans A8] gi|310758546|gb|ADP13995.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter xylosoxidans A8] Length = 399 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 208/338 (61%), Positives = 266/338 (78%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ NGL Sbjct: 62 QRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 121 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 122 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 181 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +ADQ L+ L VF Sbjct: 182 VESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 241 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN +K+ENPHLWT Sbjct: 242 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLWT 301 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANRRC QIG+EPL+ Sbjct: 302 PEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 361 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 362 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399 >gi|226940720|ref|YP_002795794.1| ribonucleotide-diphosphate reductase subunit beta [Laribacter hongkongensis HLHK9] gi|226715647|gb|ACO74785.1| Ribonucleoside-diphosphate reductase beta chain [Laribacter hongkongensis HLHK9] Length = 357 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 217/349 (62%), Positives = 267/349 (76%), Gaps = 1/349 (0%) Query: 5 TGLSPIQAGEK-RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 +SP +G RVN DKR++N +DVNQL+P KY WAW+KYL+ C NHWMP EV MQ Sbjct: 9 VAVSPAGSGTGGRVNAVDKRIINGDTDVNQLVPFKYHWAWDKYLATCANHWMPQEVNMQR 68 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ LWK NGLTDDER ++ RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFE Sbjct: 69 DIELWKRPNGLTDDERRIVIRNLGFFTTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 128 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGLDEGE+FN Y E+ SI AK + + + TL P+F TGT ++DQ Sbjct: 129 EAIHTHAYQYIVESLGLDEGEVFNAYHEIASIRAKDEFLIPFIDTLCDPAFKTGTPESDQ 188 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN Sbjct: 189 LLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLIN 248 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 IK ENPHLWT EFQ++ + +A LE AYA +TMP+G +GLNA ++Y+ FIANRR Sbjct: 249 SIKQENPHLWTVEFQEELYGLFRKAIDLEYAYAEDTMPRGVLGLNAAMFKEYLDFIANRR 308 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGLEPLF + +NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 309 MQQIGLEPLFTHVDNPFPWMSEMIDLKKEKNFFETRVTEYQSGGALDWD 357 >gi|134095932|ref|YP_001101007.1| ribonucleotide-diphosphate reductase subunit beta [Herminiimonas arsenicoxydans] gi|133739835|emb|CAL62886.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Herminiimonas arsenicoxydans] Length = 395 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 213/360 (59%), Positives = 274/360 (76%), Gaps = 9/360 (2%) Query: 2 ANNTGLSP-IQAGE--------KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52 A + L P + AG+ +R++ DKR++N ++DVNQL+P KY WAW+KYL+ C N Sbjct: 36 AQDVALDPAVMAGKPAATVDPTRRMDAADKRIINGKTDVNQLVPFKYKWAWDKYLAGCAN 95 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 HWMP E+ MQ D+ LWK+ NGLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PE Sbjct: 96 HWMPQEINMQRDIELWKNPNGLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPE 155 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172 CRQYLLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y E+ SI K + + + L+ P Sbjct: 156 CRQYLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYNEIESIRDKDQFLIPFIDVLTDP 215 Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 +FTTGT + DQ L+ L VF + EG++FY GFAQIL+LGR NKM+G AEQYQYI+RDES Sbjct: 216 NFTTGTTENDQTLLRSLIVFACLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDES 275 Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292 +H NFGID+IN IK+ENPHLWT +F+ + + + A LE YA +TMP+G +GLNAP Sbjct: 276 MHCNFGIDLINTIKLENPHLWTPQFRDEIKALFLRAVELEYRYAEDTMPRGVLGLNAPMF 335 Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 + Y++FIANRR QIGLEP+F+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 336 KGYLRFIANRRAQQIGLEPMFEQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 395 >gi|332286774|ref|YP_004418685.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp. T7-7] gi|330430727|gb|AEC22061.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp. T7-7] Length = 387 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 212/356 (59%), Positives = 268/356 (75%), Gaps = 7/356 (1%) Query: 4 NTGLSPIQA-------GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56 N ++P A G RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP Sbjct: 32 NDAMAPTPAAAGSTADGSGRVRAADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMP 91 Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 E+ M D++LWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+ Sbjct: 92 QEINMSRDISLWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQF 151 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176 LLRQAFEEA+H+H +QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P F T Sbjct: 152 LLRQAFEEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPHFQT 211 Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236 GT +ADQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H N Sbjct: 212 GTPEADQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCN 271 Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296 FGID+IN IK+ENPHLWT EF+++ R + +A LE AYA +TMP+G +GLNA + Y+ Sbjct: 272 FGIDLINTIKLENPHLWTAEFREELRELFKKAVDLEYAYAEDTMPRGVLGLNASMFKSYL 331 Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +FIANRRC QIGLEPLF ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 332 RFIANRRCQQIGLEPLFGQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGALSWE 387 >gi|293603286|ref|ZP_06685715.1| ribonucleotide-diphosphate reductase subunit beta subunit [Achromobacter piechaudii ATCC 43553] gi|292818321|gb|EFF77373.1| ribonucleotide-diphosphate reductase subunit beta subunit [Achromobacter piechaudii ATCC 43553] Length = 398 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 207/338 (61%), Positives = 264/338 (78%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV V DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ NGL Sbjct: 61 QRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 120 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 121 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 180 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +ADQ L+ L VF Sbjct: 181 VESLDLDEAEIFNAYNEVPSIRAKDQFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 240 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN +K+ENPHLWT Sbjct: 241 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLWT 300 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 F+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANRRC QIG+EPL+ Sbjct: 301 PAFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 360 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 361 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398 >gi|194290770|ref|YP_002006677.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus taiwanensis LMG 19424] gi|193224605|emb|CAQ70616.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Cupriavidus taiwanensis LMG 19424] Length = 396 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 214/352 (60%), Positives = 266/352 (75%), Gaps = 1/352 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 46 LGNNPNAAAAQSN-RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 104 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 105 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 164 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + Sbjct: 165 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 224 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ+ L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID Sbjct: 225 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 284 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI Sbjct: 285 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFIC 344 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+ LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 345 NRRCQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 396 >gi|94312018|ref|YP_585228.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus metallidurans CH34] gi|93355870|gb|ABF09959.1| Ribonucleoside-diphosphate reductase beta subunit [Cupriavidus metallidurans CH34] Length = 395 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 214/352 (60%), Positives = 266/352 (75%), Gaps = 1/352 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 45 LGNNPNAAAAQS-TRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 103 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 104 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 163 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + Sbjct: 164 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 223 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ+ L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID Sbjct: 224 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 283 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI Sbjct: 284 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFIC 343 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+ LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 344 NRRCQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395 >gi|300309722|ref|YP_003773814.1| transmembrane ribonucleoside reductase small subunit [Herbaspirillum seropedicae SmR1] gi|300072507|gb|ADJ61906.1| transmembrane ribonucleoside reductase (small chain) protein [Herbaspirillum seropedicae SmR1] Length = 388 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 213/358 (59%), Positives = 272/358 (75%), Gaps = 8/358 (2%) Query: 3 NNTGLSP-IQAGE-------KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54 +N L+P + AG +RVN DKR++N +DVNQL+P KY WAW+KYL+ C NHW Sbjct: 31 SNAALNPALMAGNSEQVDTTRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHW 90 Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 MP E+ MQ D+ LWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECR Sbjct: 91 MPQEINMQRDIELWKNPNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 150 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 QYLLRQAFEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + TL+ P F Sbjct: 151 QYLLRQAFEEAIHTHAYQYIVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEF 210 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 TGT + DQ+ L+ L VF + EG++FY GF QIL+LGR NKM+G AEQYQYI+RDES+H Sbjct: 211 KTGTMENDQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMH 270 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 NFGID+IN +K+ENPHLWT EF+++ +++ A LE YA +TMP+G +GLNAP + Sbjct: 271 CNFGIDLINTVKMENPHLWTPEFREEIKSLFLRAVELEYRYAEDTMPRGVLGLNAPMFKS 330 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Y++FIANRR QIGL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 331 YLRFIANRRAQQIGLDPLFAQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 388 >gi|113869188|ref|YP_727677.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia eutropha H16] gi|113527964|emb|CAJ94309.1| Ribonucleoside-diphosphate reductase beta subunit [Ralstonia eutropha H16] Length = 395 Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust. Identities = 211/338 (62%), Positives = 260/338 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL Sbjct: 58 RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 117 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 118 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 177 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF Sbjct: 178 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 237 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT Sbjct: 238 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 297 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGL+ LF Sbjct: 298 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQIGLDQLFP 357 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 358 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395 >gi|73542624|ref|YP_297144.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia eutropha JMP134] gi|72120037|gb|AAZ62300.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134] Length = 394 Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust. Identities = 213/352 (60%), Positives = 265/352 (75%), Gaps = 1/352 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 44 LGNNPNAAAAQSN-RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 102 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 103 MSRDIATWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 162 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + Sbjct: 163 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 222 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ+ L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID Sbjct: 223 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 282 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI Sbjct: 283 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFIC 342 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+ LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 343 NRRCQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 394 >gi|299065648|emb|CBJ36820.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum CMR15] Length = 398 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 213/352 (60%), Positives = 266/352 (75%), Gaps = 1/352 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 48 LGNNPNAAAAQSS-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 106 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 107 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 166 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + Sbjct: 167 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 226 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ+ L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID Sbjct: 227 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 286 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI Sbjct: 287 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFIC 346 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+ LF +NPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 347 NRRCQQIGLDALFPNEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 398 >gi|329902475|ref|ZP_08273120.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548767|gb|EGF33404.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 416 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 211/338 (62%), Positives = 262/338 (77%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +R+N DKR++N +DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWKS NGL Sbjct: 79 RRMNAADKRIINGNTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKSPNGL 138 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 TDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 139 TDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 198 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 SLGLDE E+FN Y EV SI K + + + L+ P FTTGT DQ+ L+ L VF Sbjct: 199 TESLGLDEAEIFNAYHEVKSIRDKDEFLIPFIDALTDPLFTTGTTINDQKLLKSLIVFSC 258 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GFAQIL+LGR NKMVG AEQYQYI+RDES+H NFGID++N IK+ENPHLWT Sbjct: 259 LMEGLFFYVGFAQILALGRQNKMVGAAEQYQYILRDESMHCNFGIDLVNTIKMENPHLWT 318 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+ + + + A LE YA +TMP+G +GLNAP + Y++FIANRR QIGLEP+F+ Sbjct: 319 PEFRDEIKALFLTAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPMFE 378 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 379 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416 >gi|17547523|ref|NP_520925.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia solanacearum GMI1000] gi|17429827|emb|CAD16511.1| putative transmembrane ribonucleoside reductase (small chain) oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 400 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 213/352 (60%), Positives = 266/352 (75%), Gaps = 1/352 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 50 LGNNPNAAAAQSS-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 108 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 109 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 168 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + Sbjct: 169 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 228 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ+ L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID Sbjct: 229 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 288 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI Sbjct: 289 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFIC 348 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+ LF +NPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 349 NRRCQQIGLDALFPNEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 400 >gi|253997287|ref|YP_003049351.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8] gi|253983966|gb|ACT48824.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8] Length = 377 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 211/349 (60%), Positives = 265/349 (75%), Gaps = 4/349 (1%) Query: 8 SPIQAGEK----RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 +P+ A + RVN DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV M Sbjct: 29 TPVAANQPSISGRVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVSMSR 88 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+A WK LTDDERL++KRNLGFF +++SL ANNIVL YRH++ PE RQYLLRQ FE Sbjct: 89 DIAQWKDSTALTDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPEARQYLLRQGFE 148 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGLDE E+FN Y+EV SI K ++ + + TL++P F TGT +ADQ Sbjct: 149 EAIHTHAYQYIVESLGLDESEVFNAYQEVASIKDKDDFLIPFINTLTNPEFKTGTAEADQ 208 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVIN Sbjct: 209 QLLRSLIVFACIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDVIN 268 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 IK+ENPHLWT EF+ + + ++ LE YA TMP+G +GLNA ++Y++FIANRR Sbjct: 269 TIKLENPHLWTAEFRDEIKGLIQHGVELEYRYAEATMPRGVLGLNATMFKEYLRFIANRR 328 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL+ L++ NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 329 CQQIGLDVLYQGATNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 377 >gi|300690381|ref|YP_003751376.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum PSI07] gi|299077441|emb|CBJ50067.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum PSI07] Length = 402 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 213/352 (60%), Positives = 266/352 (75%), Gaps = 1/352 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 110 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 111 MSRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 170 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + Sbjct: 171 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 230 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ+ L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID Sbjct: 231 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 290 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI Sbjct: 291 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFIC 350 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+ LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 351 NRRCQQIGLDALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402 >gi|255019898|ref|ZP_05291973.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] gi|254970678|gb|EET28165.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] Length = 374 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 209/338 (61%), Positives = 267/338 (78%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP EV M D+ALWK GL Sbjct: 37 ERVRAEDKRIINGSADVNQLVPFKYHWAWDKYLAACANHWMPQEVQMARDIALWKDPKGL 96 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 97 TEDERRIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 156 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + S+GLDEGE+FNMY EVPSI AK + L + +TL+ PSF TGT + DQ+ L+ L VF Sbjct: 157 VESIGLDEGEIFNMYHEVPSIRAKDEFLLPFIRTLTDPSFHTGTPENDQKLLRSLIVFAA 216 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+INQIK+ENP LWT Sbjct: 217 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLINQIKVENPDLWT 276 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + FQ++ +++ + LE AYA +TMP+G +GLNAP + Y+++I NRR Q+GL + Sbjct: 277 EPFQEEIVSLIRKGVELECAYADDTMPRGVLGLNAPIFKDYVKYIGNRRLQQLGLPVQWA 336 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD Sbjct: 337 GIQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 374 >gi|89902117|ref|YP_524588.1| ribonucleotide-diphosphate reductase subunit beta [Rhodoferax ferrireducens T118] gi|89346854|gb|ABD71057.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens T118] Length = 400 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 212/351 (60%), Positives = 267/351 (76%), Gaps = 1/351 (0%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 AN G + + +RVN DKR++N ++DVNQL+P KY WAWEKYLS+C NHWMP EV M Sbjct: 51 ANQRG-AAVSISPRRVNAADKRIINGKTDVNQLVPFKYKWAWEKYLSSCANHWMPQEVNM 109 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 110 TRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P+F TGT +A Sbjct: 170 FEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPAFKTGTHEA 229 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ L+ L VF + EG++FY GFAQIL+LGR NKM G AEQYQYI+RDES+H NFGID+ Sbjct: 230 DQTLLKSLIVFACLMEGLFFYVGFAQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 289 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQ+K+ENP LWT EF+ + + + +A LE YA +TMP+G +G+NA + Y+++IAN Sbjct: 290 INQLKLENPQLWTSEFKAEIKALFEQAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIAN 349 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RR QIGLE LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 350 RRATQIGLETLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 400 >gi|145588393|ref|YP_001154990.1| ribonucleotide-diphosphate reductase subunit beta [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046799|gb|ABP33426.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 394 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 210/354 (59%), Positives = 268/354 (75%), Gaps = 6/354 (1%) Query: 5 TGLSPIQAGEK------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTE 58 T +P++A RVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP E Sbjct: 41 TAPAPVEAANLSGGAALRVNAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQE 100 Query: 59 VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118 + M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQYLL Sbjct: 101 INMNRDIALWKDPNGLTEDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLL 160 Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 RQAFEEA+H+H +QYI+ SLGLD+ E+FN Y E+ SI AK + + Y L++P+F TGT Sbjct: 161 RQAFEEAIHTHAYQYIVESLGLDQSEIFNAYNEIESIRAKDEFLIPYIDVLTNPNFKTGT 220 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + DQ L+ L VF V EG++FY GF QIL++GR NKM G AEQYQYI+RDES+H NFG Sbjct: 221 LETDQTLLRSLIVFACVMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFG 280 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 ID+INQIK+ENP LWT F+ + +++ +A LE YA +TMP+G +GLNAP + Y+++ Sbjct: 281 IDLINQIKLENPQLWTSAFKDEIKSIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGYLRY 340 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 I NRRC QIGL+ +F ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 341 ICNRRCLQIGLDAMFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 394 >gi|187930114|ref|YP_001900601.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia pickettii 12J] gi|187727004|gb|ACD28169.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12J] Length = 402 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 212/352 (60%), Positives = 265/352 (75%), Gaps = 1/352 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + NN + Q+ +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 LGNNPNAAAAQSN-RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 110 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQ Sbjct: 111 MSRDIATWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQ 170 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + Sbjct: 171 AFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPE 230 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ+ L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID Sbjct: 231 NDQKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGID 290 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI Sbjct: 291 LINQIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFIC 350 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+ LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 351 NRRCQQIGLDALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402 >gi|241664219|ref|YP_002982579.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia pickettii 12D] gi|309783064|ref|ZP_07677783.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp. 5_7_47FAA] gi|240866246|gb|ACS63907.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D] gi|308918172|gb|EFP63850.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp. 5_7_47FAA] Length = 402 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 210/338 (62%), Positives = 260/338 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL Sbjct: 65 RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 124 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF Sbjct: 185 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT Sbjct: 245 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 304 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGL+ LF Sbjct: 305 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALFP 364 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402 >gi|158341282|ref|YP_001522354.1| ribonucleotide-diphosphate reductase subunit beta [Acaryochloris marina MBIC11017] gi|158311523|gb|ABW33134.1| ribonucleoside-diphosphate reductase, beta subunit [Acaryochloris marina MBIC11017] Length = 384 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 205/338 (60%), Positives = 263/338 (77%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +R+NV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+ALWK+ +GL Sbjct: 47 RRINVADKRIINGQTDVNQLVPFKYQWAWDKYLAGCANHWMPQEINMSRDIALWKTTDGL 106 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 107 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 166 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDEGE+FN YREV I K + + + +TL+ P+F TGT + DQ+ L+ L F Sbjct: 167 VESLGLDEGEIFNAYREVDCIREKDEFLIPFVETLTDPTFETGTPENDQKLLKSLIAFSC 226 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID++N IK ENPHLWT Sbjct: 227 LMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLVNAIKQENPHLWT 286 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF ++ R + A LE YA +TMP+G +GLNA + Y+++IANRR QIGL+P+F Sbjct: 287 PEFCEEIRDLFKRAVELEYRYAEDTMPRGVLGLNASMFKSYLRYIANRRSQQIGLDPIFA 346 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE++DLKKE+NFFETRV EYQ G L WD Sbjct: 347 SEENPFPWMSEMVDLKKERNFFETRVLEYQTGGALSWD 384 >gi|332526550|ref|ZP_08402662.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax benzoatilyticus JA2] gi|332110818|gb|EGJ10995.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax benzoatilyticus JA2] Length = 385 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 211/353 (59%), Positives = 265/353 (75%), Gaps = 5/353 (1%) Query: 5 TGLSPIQ-----AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 T SP+ A +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV Sbjct: 33 TNASPVSRPAATAHTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEV 92 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLR Sbjct: 93 NMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLR 152 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I K + + + + P+F+TGT Sbjct: 153 QAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRDKDEFLIPFIDAIMDPAFSTGTP 212 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 +ADQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGI Sbjct: 213 EADQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGI 272 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 D+INQIK+ENP LWT F+ + R + A LE YA +TMP+G +G+NA + Y+++I Sbjct: 273 DLINQIKLENPQLWTPAFKAEIRALFERAVELEYRYAEDTMPRGVLGMNASMFKGYLRYI 332 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ANRR QIGLE LF ENPFPWMSE+IDLKKE+NFFETRV +YQ G L WD Sbjct: 333 ANRRATQIGLEALFPNEENPFPWMSEMIDLKKERNFFETRVIDYQSGGALSWD 385 >gi|160896947|ref|YP_001562529.1| ribonucleotide-diphosphate reductase subunit beta [Delftia acidovorans SPH-1] gi|160362531|gb|ABX34144.1| Ribonucleoside-diphosphate reductase [Delftia acidovorans SPH-1] Length = 363 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 210/338 (62%), Positives = 262/338 (77%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 26 KRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPNGL 85 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 86 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 145 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDEGE+FN Y EVPSI K + + + + + P+F TGT + DQ L+ L VF Sbjct: 146 VESLGLDEGEIFNAYLEVPSIRDKDEFLIPFIEAIMDPAFKTGTFETDQTLLKSLIVFAC 205 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT Sbjct: 206 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPQLWT 265 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+++ + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 266 PEFKEEITALFVKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALFP 325 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 326 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363 >gi|299533977|ref|ZP_07047329.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas testosteroni S44] gi|298717886|gb|EFI58891.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas testosteroni S44] Length = 363 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 209/338 (61%), Positives = 261/338 (77%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 26 KRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 85 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 86 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 145 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDE E+FN Y EV SI K + + + + + P+F TGT + DQ L+ L VF Sbjct: 146 VESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFAC 205 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT Sbjct: 206 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWT 265 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+Q+ + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 266 AEFKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEELFP 325 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 326 GEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363 >gi|221065168|ref|ZP_03541273.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1] gi|220710191|gb|EED65559.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1] Length = 363 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 209/338 (61%), Positives = 260/338 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 26 KRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 85 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 86 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 145 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDE E+FN Y EV SI K + + + + + P+F TGT + DQ L+ L VF Sbjct: 146 VESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFAC 205 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT Sbjct: 206 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWT 265 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+Q+ + A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 266 AEFKQEITELFQRAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEELFP 325 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 326 GEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363 >gi|241764092|ref|ZP_04762129.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN] gi|241366556|gb|EER61044.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN] Length = 398 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 208/338 (61%), Positives = 260/338 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 61 RRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 120 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 TDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 121 TDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 180 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDE E+FN Y EV SI K + + + + + P+F TGT +ADQ L+ L VF Sbjct: 181 VESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFKTGTPEADQRLLKSLIVFAC 240 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT Sbjct: 241 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWT 300 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+ + + + A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 301 AEFKAEIKALFMRAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLETLFP 360 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 361 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 398 >gi|121595925|ref|YP_987821.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax sp. JS42] gi|222112113|ref|YP_002554377.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax ebreus TPSY] gi|120608005|gb|ABM43745.1| Ribonucleoside-diphosphate reductase [Acidovorax sp. JS42] gi|221731557|gb|ACM34377.1| Ribonucleoside-diphosphate reductase [Acidovorax ebreus TPSY] Length = 396 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 207/338 (61%), Positives = 262/338 (77%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 59 RRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 118 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 119 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 178 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDEGE+FN Y EV SI K + + + + + P FTTGT ++DQ L+ L VF Sbjct: 179 VESLGLDEGEIFNAYNEVQSIRDKDEFLIPFIEAIMDPRFTTGTPESDQTLLKSLIVFAC 238 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT Sbjct: 239 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWT 298 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+ + + + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 299 AEFKDEIKALFIKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALFP 358 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 359 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 396 >gi|91787004|ref|YP_547956.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas sp. JS666] gi|91696229|gb|ABE43058.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666] Length = 406 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 208/337 (61%), Positives = 258/337 (76%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT Sbjct: 70 RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 129 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 130 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIT 189 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLDE E+FN Y EV SI K + + + + +S P F TGT +ADQ L+ L VF + Sbjct: 190 ESLGLDEAEIFNAYNEVQSIKDKDQFLIPFIEVISDPHFKTGTTEADQTLLKSLIVFACL 249 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT Sbjct: 250 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 309 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 EF+ + + + +A LE YA +TMP+G +GLNA + Y+++IANRR QIGLE LF Sbjct: 310 EFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLETLFPN 369 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 370 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 406 >gi|326315613|ref|YP_004233285.1| ribonucleoside-diphosphate reductase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372449|gb|ADX44718.1| Ribonucleoside-diphosphate reductase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 387 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 207/341 (60%), Positives = 261/341 (76%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A +RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK Sbjct: 47 AQHRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDP 106 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 107 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 166 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 QYI+ SLGLDE E+FN Y EV SI K + + + + + P F TGT + DQ L+ L V Sbjct: 167 QYIVESLGLDESEIFNAYNEVDSIRNKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIV 226 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPH Sbjct: 227 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPH 286 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 LWT EF+++ + + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE Sbjct: 287 LWTAEFKEEIKGLFMKAVELEYQYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEA 346 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 347 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387 >gi|294339031|emb|CAZ87378.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside diphosphate reductase, beta subunit) [Thiomonas sp. 3As] Length = 410 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 208/345 (60%), Positives = 264/345 (76%), Gaps = 4/345 (1%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A RV +DKR++N DVNQL+P KY WAW+KYL++C NHWMP EV M D+A+WK Sbjct: 66 ASTARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEVNMSRDIAMWKDP 125 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLTDDERL+IKRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H + Sbjct: 126 NGLTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAY 185 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT----GTKDADQEFLQ 187 QYI+ S+GLDE E+FN Y E+ SI K + + + TL++P F T G++ DQE L+ Sbjct: 186 QYIVESIGLDESEIFNSYHEITSIREKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELLR 245 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + VF + EG++FY GF QILS+GR NKM G AEQYQYI+RDES+H NFGID++NQIK+ Sbjct: 246 SIIVFACLMEGLFFYVGFTQILSMGRQNKMTGAAEQYQYILRDESMHTNFGIDLVNQIKL 305 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+++ + H+A LE YA +TMP+G +GLNA + Y++FIANRR QI Sbjct: 306 ENPHLWTPEFKRELTGLFHQAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAVQI 365 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+ +F ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 366 GLDAIFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWE 410 >gi|121606275|ref|YP_983604.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas naphthalenivorans CJ2] gi|120595244|gb|ABM38683.1| Ribonucleoside-diphosphate reductase [Polaromonas naphthalenivorans CJ2] Length = 387 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 209/343 (60%), Positives = 260/343 (75%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I A KRV DKR++N ++DVNQL+P KY WAWEKYL++C NHWMP EV M D+ALWK Sbjct: 45 IPAKAKRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLASCANHWMPQEVNMTRDIALWK 104 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 NGL+DDER ++ RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H Sbjct: 105 DPNGLSDDERRLVMRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTH 164 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 +QYI SLGLDEGE+FN Y EV SI K + + + + +S P F TGT ++DQ L+ L Sbjct: 165 AYQYITESLGLDEGEIFNAYNEVQSIKDKDQFLIPFIEAISDPGFKTGTLESDQTLLKSL 224 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+EN Sbjct: 225 IVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLEN 284 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 P LWT EF+ + + +A LE YA +TMP+G +GLNA + Y+++IANRR QIGL Sbjct: 285 PQLWTAEFKAEINALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGL 344 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 E LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 345 ETLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387 >gi|296135014|ref|YP_003642256.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12] gi|295795136|gb|ADG29926.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12] Length = 402 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 207/345 (60%), Positives = 264/345 (76%), Gaps = 4/345 (1%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A RV +DKR++N DVNQL+P KY WAW+KYL++C NHWMP E+ M D+A+WK Sbjct: 58 ASTARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEINMSRDIAMWKDP 117 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLTDDERL+IKRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H + Sbjct: 118 NGLTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAY 177 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT----GTKDADQEFLQ 187 QYI+ S+GLDE E+FN Y E+ SI K + + + TL++P F T G++ DQE L+ Sbjct: 178 QYIVESIGLDESEIFNSYHEIASIRDKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELLR 237 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + VF + EG++FY GF QILS+GR NKM G AEQYQYI+RDES+H NFGID++NQIK+ Sbjct: 238 SIIVFACLMEGLFFYVGFTQILSMGRQNKMTGAAEQYQYILRDESMHTNFGIDLVNQIKL 297 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+++ + H+A LE YA +TMP+G +GLNA + Y++FIANRR QI Sbjct: 298 ENPHLWTPEFKRELTGLFHQAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAVQI 357 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+ +F ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 358 GLDAIFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWE 402 >gi|171463021|ref|YP_001797134.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192559|gb|ACB43520.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 394 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 205/337 (60%), Positives = 260/337 (77%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGLT Sbjct: 58 RVKAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMNRDIALWKDPNGLT 117 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI+ Sbjct: 118 EDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 177 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLD+ E+FN Y E+ SI AK + + Y L++P+F TGT +ADQ L+ L VF V Sbjct: 178 ESLGLDQSEIFNAYHEIDSIRAKDEFLIPYIDVLTNPNFKTGTLEADQTLLRSLIVFACV 237 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QIL++GR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW Sbjct: 238 MEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWIS 297 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 F+ + +++ +A LE YA +TMP+G +GLNAP + +++I NRRC QIGL+ +F Sbjct: 298 AFKDEIKSIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGCLRYICNRRCLQIGLDAMFPN 357 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 358 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 394 >gi|74317993|ref|YP_315733.1| ribonucleotide-diphosphate reductase subunit beta [Thiobacillus denitrificans ATCC 25259] gi|74057488|gb|AAZ97928.1| ribonucleoside-diphosphate reductase beta chain [Thiobacillus denitrificans ATCC 25259] Length = 376 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 204/337 (60%), Positives = 258/337 (76%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP EV M D+A WK LT Sbjct: 40 RVRASDKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIAQWKDPTALT 99 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI+ Sbjct: 100 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 159 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLDE E+FN Y E+ SI K ++ + + TL++P F TGT + DQ+ L+ L VF + Sbjct: 160 ESLGLDEAEIFNAYHEIESIRDKDDFLIPFIDTLTNPEFKTGTPENDQKLLKSLIVFACI 219 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK ENPHLWT Sbjct: 220 MEGIFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTIKQENPHLWTS 279 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 EF+ + RT++ + LE YA +TMP+G +GLN+ ++Y++FI+NRRC QIGL+ +F Sbjct: 280 EFKAEIRTLIQKGVELEFRYAEDTMPRGVLGLNSAQFKEYLRFISNRRCQQIGLDEMFPG 339 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWM+E+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 340 VSNPFPWMAEMIDLKKEKNFFETRVTEYQTGGALSWD 376 >gi|239813962|ref|YP_002942872.1| ribonucleotide-diphosphate reductase subunit beta [Variovorax paradoxus S110] gi|239800539|gb|ACS17606.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus S110] Length = 391 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 206/337 (61%), Positives = 258/337 (76%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT Sbjct: 55 RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 114 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 115 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 174 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLDE E+FN Y EVPSI K + + + +S P+F TGT + DQ L+ L VF + Sbjct: 175 ESLGLDESEIFNAYNEVPSIREKDQFLIPFIDAISDPNFKTGTHETDQTLLKSLIVFACL 234 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT Sbjct: 235 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWTP 294 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 EF+ + + + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 295 EFKAEIKALFLKAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFPN 354 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 355 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 391 >gi|253998799|ref|YP_003050862.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4] gi|253985478|gb|ACT50335.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4] Length = 383 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 203/337 (60%), Positives = 262/337 (77%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+A WK + LT Sbjct: 47 RVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSSALT 106 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI+ Sbjct: 107 EDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 166 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLDE E+FN Y+EV SI K ++ + + TL+ P F TGT ADQ+ L+ L VF + Sbjct: 167 ESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVFACI 226 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K+ENPHLWT Sbjct: 227 MEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDLINTLKLENPHLWTP 286 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 EF+++ + ++ +A LE YA +TMP+G +GLNA ++Y++FIANRR QIG++ L+ Sbjct: 287 EFREEIKRLMQQAVELEYRYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGIDALYPG 346 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD Sbjct: 347 ASNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 383 >gi|120609557|ref|YP_969235.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax citrulli AAC00-1] gi|120588021|gb|ABM31461.1| Ribonucleoside-diphosphate reductase [Acidovorax citrulli AAC00-1] Length = 387 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 206/338 (60%), Positives = 260/338 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 50 RRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 109 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 110 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 169 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDE E+FN Y EV SI K + + + + + P F TGT + DQ L+ L VF Sbjct: 170 VESLGLDESEIFNAYNEVDSIRHKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIVFAC 229 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT Sbjct: 230 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWT 289 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+++ + + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 290 AEFKEEIKGLFMKAVELEYQYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALFP 349 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 350 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387 >gi|268316001|ref|YP_003289720.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM 4252] gi|262333535|gb|ACY47332.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM 4252] Length = 347 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 207/341 (60%), Positives = 271/341 (79%), Gaps = 3/341 (0%) Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 G +R+ V+DKR++N DVNQL+P+KY WAWE YL+ C NHWMP+E+PM D+ LW+S Sbjct: 8 GSRRIRVEDKRLINCHEVDVNQLMPIKYAWAWEHYLNGCKNHWMPSEIPMARDIELWRS- 66 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 + LTDDERL+I RNLGFFA++ESLV NNIVLAI+RH++NPECRQYLLRQAFEEA+H+H F Sbjct: 67 DKLTDDERLVILRNLGFFATAESLVGNNIVLAIFRHVTNPECRQYLLRQAFEEAIHTHAF 126 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 YI+ SLGLDEGE+FNMYRE+P++ K + ++ T+ + P FTT T + Q FL++L Sbjct: 127 LYIVESLGLDEGEVFNMYREIPAVARKDEFEMELTREVLRPDFTTATVEGAQAFLKNLIG 186 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 +YV+ EG++FY+GFA ILS R NKM GI EQ+QYI+RDE++HLNFGID+IN IK ENP Sbjct: 187 YYVIMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIKAENPE 246 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 LWT EFQ++ + ++ EA LE+AYA++ +P+G +GL AP +Y+Q+IA+RR +IGL+ Sbjct: 247 LWTPEFQREVQQLIEEAVELEVAYAYDCLPRGVLGLTAPMFREYVQYIADRRLERIGLKA 306 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 + ++NPFPWMSE IDL KEKNFFETRVTEYQQ A L WD Sbjct: 307 RYG-SKNPFPWMSETIDLLKEKNFFETRVTEYQQAAALSWD 346 >gi|313200886|ref|YP_004039544.1| ribonucleoside-diphosphate reductase [Methylovorus sp. MP688] gi|312440202|gb|ADQ84308.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. MP688] Length = 381 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 203/337 (60%), Positives = 262/337 (77%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+A WK + LT Sbjct: 45 RVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSSALT 104 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI+ Sbjct: 105 EDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 164 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLDE E+FN Y+EV SI K ++ + + TL+ P F TGT ADQ+ L+ L VF + Sbjct: 165 ESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVFACI 224 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K+ENPHLWT Sbjct: 225 MEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDLINTLKLENPHLWTP 284 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 EF+++ + ++ +A LE YA +TMP+G +GLNA ++Y++FIANRR QIG++ L+ Sbjct: 285 EFREEIKRLMQQAVELEYRYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGIDALYPG 344 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD Sbjct: 345 ASNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 381 >gi|124268397|ref|YP_001022401.1| ribonucleotide-diphosphate reductase subunit beta [Methylibium petroleiphilum PM1] gi|124261172|gb|ABM96166.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum PM1] Length = 403 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 208/341 (60%), Positives = 260/341 (76%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 AG +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+A WK Sbjct: 63 AGTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDP 122 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGL++DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 123 NGLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 QYI+ SLGLDE E+FN Y EV SI K + + + + P+F TGT + D+ L+ L V Sbjct: 183 QYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIGAIMDPNFHTGTLENDRTLLKSLIV 242 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP Sbjct: 243 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQ 302 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 LWT EF+ + + + +A LE YA +TMP+G +GLNA + Y+++IANRR QIGLE Sbjct: 303 LWTAEFKAEIKALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEE 362 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 363 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 403 >gi|171057074|ref|YP_001789423.1| ribonucleotide-diphosphate reductase subunit beta [Leptothrix cholodnii SP-6] gi|170774519|gb|ACB32658.1| Ribonucleoside-diphosphate reductase [Leptothrix cholodnii SP-6] Length = 402 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 208/338 (61%), Positives = 255/338 (75%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+A WK NGL Sbjct: 65 RRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDPNGL 124 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 TDDER +IKRNLGFF +++SL ANNI L YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 125 TDDERRLIKRNLGFFVTADSLAANNITLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 184 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDE E+FN Y EV SI K + + Y + P F TGT + DQ L+ L VF Sbjct: 185 VESLGLDESEIFNAYHEVASIREKDEFLIPYIDAIMDPHFKTGTPENDQTLLKSLIVFAC 244 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK+ENPHLWT Sbjct: 245 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINAIKLENPHLWT 304 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 F+ + + + +A LE YA +TMP+G +GLNA + Y+++IANRR QIGLE LF Sbjct: 305 PAFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEELFP 364 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 402 >gi|264680215|ref|YP_003280125.1| ribonucleotide reductase [Comamonas testosteroni CNB-2] gi|262210731|gb|ACY34829.1| ribonucleotide reductase [Comamonas testosteroni CNB-2] Length = 336 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 206/336 (61%), Positives = 259/336 (77%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +N DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT+ Sbjct: 1 MNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLTE 60 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 61 DERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIVE 120 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 SLGLDE E+FN Y EV SI K + + + + + P+F TGT + DQ L+ L VF + Sbjct: 121 SLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFACLM 180 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT E Sbjct: 181 EGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTAE 240 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 F+Q+ + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 241 FKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEELFPGE 300 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 301 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 336 >gi|218665361|ref|YP_002427016.1| ribonucleoside-diphosphate reductase, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218517574|gb|ACK78160.1| ribonucleoside-diphosphate reductase, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 380 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 201/338 (59%), Positives = 260/338 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP E+ M D+ALWK GL Sbjct: 43 ERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKGL 102 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQY+LRQAFEEA+H+H +QYI Sbjct: 103 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQYI 162 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + S+GLDEGE+FNMY EVPS+ K + + + L+ P F TGT + DQ+ L+ L VF Sbjct: 163 VESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLENDQKLLRSLIVFAA 222 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+ NQIK+ENP LWT Sbjct: 223 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENPQLWT 282 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + FQQ+ ++ LE AYA +TMP+G +GLNAP +Y+++I NRR Q+GL + Sbjct: 283 EAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIGNRRLVQLGLPQQYP 342 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +NPFPWMSE++DLKKEKNFFETRVTEYQ G L W+ Sbjct: 343 GVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 380 >gi|198284354|ref|YP_002220675.1| ribonucleotide-diphosphate reductase subunit beta [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248875|gb|ACH84468.1| Ribonucleoside-diphosphate reductase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 374 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 201/338 (59%), Positives = 260/338 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP E+ M D+ALWK GL Sbjct: 37 ERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKGL 96 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQY+LRQAFEEA+H+H +QYI Sbjct: 97 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQYI 156 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + S+GLDEGE+FNMY EVPS+ K + + + L+ P F TGT + DQ+ L+ L VF Sbjct: 157 VESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLENDQKLLRSLIVFAA 216 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+ NQIK+ENP LWT Sbjct: 217 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENPQLWT 276 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + FQQ+ ++ LE AYA +TMP+G +GLNAP +Y+++I NRR Q+GL + Sbjct: 277 EAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIGNRRLVQLGLPQQYP 336 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +NPFPWMSE++DLKKEKNFFETRVTEYQ G L W+ Sbjct: 337 GVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 374 >gi|319791701|ref|YP_004153341.1| ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS] gi|315594164|gb|ADU35230.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS] Length = 411 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 206/338 (60%), Positives = 256/338 (75%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 74 QRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 133 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 134 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 193 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDE E+FN Y EV SI K + L + +S P F TGT + DQ L+ L VF Sbjct: 194 VESLGLDESEIFNAYNEVQSIREKDQFLLPFIDAISDPHFKTGTHETDQTLLKSLIVFAC 253 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT Sbjct: 254 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWT 313 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+ + + + A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 314 PEFKAEIKDLFMRAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFP 373 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 374 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 411 >gi|332530699|ref|ZP_08406630.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella gracilis ATCC 19624] gi|332039867|gb|EGI76262.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella gracilis ATCC 19624] Length = 399 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 206/341 (60%), Positives = 258/341 (75%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 +G R+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK Sbjct: 59 SGTHRIKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDP 118 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGL++DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 119 NGLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 178 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 QYI+ SLGLDE E+F+ Y EV SI K + L + + P+F TGT + DQ L+ L V Sbjct: 179 QYIVESLGLDESEIFSAYLEVQSIRDKDEFLLPFINAIMDPNFHTGTLETDQTLLKSLIV 238 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP Sbjct: 239 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQ 298 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 LWT EF+ + R + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE Sbjct: 299 LWTPEFKAEIRGLFEKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEA 358 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 359 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 399 >gi|149927167|ref|ZP_01915424.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp. MED105] gi|149824106|gb|EDM83327.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp. MED105] Length = 399 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 206/346 (59%), Positives = 259/346 (74%), Gaps = 2/346 (0%) Query: 9 PIQAGEK--RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P G K RVN DKR++N +DVNQL+P KY WAWEKYLS C NHWMP E+ M D+A Sbjct: 54 PAAEGAKAGRVNAADKRVINGTTDVNQLVPFKYKWAWEKYLSQCANHWMPQEINMDRDIA 113 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 LWK NGLT+DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAF+EA+ Sbjct: 114 LWKDPNGLTEDERLIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFDEAI 173 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 H+H +QYI+ SLG+ E E FN Y E+ I AK ++ L + L+ PSF TGT +ADQ L Sbjct: 174 HTHAYQYIVESLGIPEAETFNAYNEISCIKAKDDFLLPFIDVLTDPSFKTGTLEADQTLL 233 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + L F + EGM+FY GF QIL+LGR NKM+G AEQ+QYI+RDES H FGID+IN +K Sbjct: 234 KSLIAFACIMEGMFFYVGFVQILALGRQNKMIGAAEQFQYILRDESAHCTFGIDLINTVK 293 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 +ENPHLWT EF+++ + M +A LE AYA +TMP+G +GLN+ +YM+FI NRR +Q Sbjct: 294 LENPHLWTPEFKEEIKAMFRKAVELEHAYAVDTMPRGVLGLNSAQFMEYMKFICNRRSNQ 353 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 IGL L++ NPFPWMSE++DLKKE NFFE RVTEYQ G L WD Sbjct: 354 IGLGTLYEGATNPFPWMSEMMDLKKETNFFERRVTEYQTGGALSWD 399 >gi|319764328|ref|YP_004128265.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans BC] gi|330826374|ref|YP_004389677.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans K601] gi|317118889|gb|ADV01378.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans BC] gi|329311746|gb|AEB86161.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans K601] Length = 396 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 203/338 (60%), Positives = 260/338 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL Sbjct: 59 RRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMTRDIALWKDPNGL 118 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 119 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 178 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDEGE+FN Y EV SI AK + + + + + P+F TGT + DQ L+ L VF Sbjct: 179 VESLGLDEGEIFNAYNEVESIRAKDEFLIPFIEAIMDPAFKTGTPENDQTLLKSLIVFAC 238 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT Sbjct: 239 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPQLWT 298 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 F+ + + + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGL+ LF Sbjct: 299 PAFKDEIKGLFLKAVDLEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLDALFP 358 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 359 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 396 >gi|121608466|ref|YP_996273.1| ribonucleotide-diphosphate reductase subunit beta [Verminephrobacter eiseniae EF01-2] gi|121553106|gb|ABM57255.1| Ribonucleoside-diphosphate reductase [Verminephrobacter eiseniae EF01-2] Length = 399 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 209/357 (58%), Positives = 264/357 (73%), Gaps = 9/357 (2%) Query: 5 TGLSPIQAG---------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55 TG++P +G ++RVN DKR++N ++DVNQL+PLKY WAWEKYL++C NHWM Sbjct: 43 TGIAPASSGTRHQAPDAAQRRVNAADKRIINGQTDVNQLVPLKYKWAWEKYLASCANHWM 102 Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P EV M D+ALWK+ GL+DDER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ Sbjct: 103 PQEVNMTRDIALWKTPGGLSDDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQ 162 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT 175 +LLRQAFEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P F Sbjct: 163 FLLRQAFEEAIHTHAYQYIVESLGLDESEIFNAYNEVRSIRDKDQFLIPFIEAIMDPHFH 222 Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 TG+ DQ L+ L VF + EG++FY GFAQIL+LGR NKM G AEQYQYI+RDES+H Sbjct: 223 TGSAANDQTLLKSLIVFACLMEGLFFYVGFAQILALGRQNKMTGAAEQYQYILRDESMHC 282 Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295 NFGID+INQIK+ENP LWT F+ + + +A LE YA +TMP G +G+NA + Y Sbjct: 283 NFGIDLINQIKLENPLLWTTAFKAEIEALFLQAVELEYRYAEDTMPHGVLGMNASMFKGY 342 Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +++IANRR QIGLE LF NPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 343 LRYIANRRATQIGLETLFPQETNPFPWMSEMIDLKKERNFFETRVIEYQSGGALCWD 399 >gi|224825450|ref|ZP_03698555.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002] gi|224602371|gb|EEG08549.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002] Length = 360 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 204/340 (60%), Positives = 257/340 (75%), Gaps = 1/340 (0%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV MQ D+ WK+ Sbjct: 22 GTGRVNASDKRVINGQTDVNQLVPFKYKWAWEKYLAQCANHWMPQEVNMQRDIEQWKTGQ 81 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L++DE ++KRNLGFF +++SL ANNIVL YR ++ PECRQ+LLRQAF+EA+H+H +Q Sbjct: 82 -LSEDEMRLVKRNLGFFVTADSLAANNIVLGTYRQITAPECRQFLLRQAFDEAIHTHAYQ 140 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI+ SLGLDEGE+FN Y E+ SI K + + + TL +P F TGT + DQ+ L+ L VF Sbjct: 141 YIVESLGLDEGEVFNAYHEIKSIRDKDEFLIPFIDTLCNPEFKTGTTETDQQLLKSLIVF 200 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K ENP L Sbjct: 201 ACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTVKQENPQL 260 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 WT+EF+ + + A LE AYA +TMP+G +GLNA ++Y++FIANRR QIGLEP+ Sbjct: 261 WTEEFKAEITGLFKHAVELEYAYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGLEPM 320 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 F NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 321 FPGVTNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 360 >gi|34497739|ref|NP_901954.1| ribonucleotide-diphosphate reductase subunit beta [Chromobacterium violaceum ATCC 12472] gi|34103595|gb|AAQ59956.1| ribonucleoside-diphosphate reductase system [Chromobacterium violaceum ATCC 12472] Length = 360 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 204/340 (60%), Positives = 257/340 (75%), Gaps = 1/340 (0%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G RVNV DK+++N +DVNQL+P K+ WAWEKYL+ C NHWMP EV MQ D+ WK+ Sbjct: 22 GTGRVNVVDKKVINGTTDVNQLVPFKHKWAWEKYLAQCANHWMPQEVNMQRDIEQWKTGQ 81 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT+DE ++KRNLGFF +++SL ANNIVL YR +++PECRQ+LLRQAF+EA+H+H +Q Sbjct: 82 -LTEDEMRIVKRNLGFFVTADSLAANNIVLGTYRQITSPECRQFLLRQAFDEAIHTHAYQ 140 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI+ SLGLDEGE+FN Y EV SI K + + + L +P F TGT + DQ+ L+ L VF Sbjct: 141 YIVESLGLDEGEVFNAYHEVKSIRDKDEFLIPFIDVLCNPEFKTGTVENDQKLLKSLIVF 200 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK+ENP L Sbjct: 201 ACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTIKLENPLL 260 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 WT F+ + + +A LE AYA +TMP+G +GLNA ++Y++FIANRR QIGL+PL Sbjct: 261 WTDSFKAEIVDLFKQAVELEYAYAEDTMPRGVLGLNASMFKEYLRFIANRRMQQIGLDPL 320 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 F NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 321 FPGVNNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 360 >gi|167837963|ref|ZP_02464822.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis MSMB43] Length = 303 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 191/303 (63%), Positives = 238/303 (78%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 C NHWMP E+ M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ Sbjct: 1 CANHWMPQEINMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHIT 60 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I AK + + + TL Sbjct: 61 APECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRAKDEFLIPFIHTL 120 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + P+FTTGT +ADQ+ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+R Sbjct: 121 TDPAFTTGTLEADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILR 180 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DES+H NFGID+INQIK+ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA Sbjct: 181 DESMHCNFGIDLINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNA 240 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 + Y++FI+NRRC QIGL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L Sbjct: 241 SMFKSYLRFISNRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGAL 300 Query: 350 KWD 352 W+ Sbjct: 301 SWE 303 >gi|283779060|ref|YP_003369815.1| ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068] gi|283437513|gb|ADB15955.1| Ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068] Length = 357 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 194/334 (58%), Positives = 257/334 (76%), Gaps = 3/334 (0%) Query: 20 DDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++KR++N + DVNQL+P+KY WAWE Y + C NHWMP+EVPM D+ W++ + LTDDE Sbjct: 26 EEKRLINCSTVDVNQLMPIKYHWAWEHYQNGCANHWMPSEVPMGKDIETWRTGS-LTDDE 84 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +L+I RNLGFF+++ESLV NN+VLAI+RH++NPECRQYLLRQAFEEA+H+HTF YI+ SL Sbjct: 85 KLVILRNLGFFSTAESLVGNNLVLAIFRHVTNPECRQYLLRQAFEEAIHTHTFLYIVESL 144 Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 GLD+ E+FNMYRE+PSI K + +Q T L P+FTT T + Q+FL++L +Y++ EG Sbjct: 145 GLDDREVFNMYREIPSIARKDAFEMQLTTGLLDPNFTTETAEGAQKFLENLIGYYLIMEG 204 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++FYTGF ILS R N+M GI EQ+QYI+RDE++HLNFGID+IN ++ ENP +WT +FQ Sbjct: 205 IFFYTGFVMILSFHRQNRMTGIGEQFQYILRDETIHLNFGIDLINGVRAENPGIWTADFQ 264 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ ++ EA LE+AYA + +P+G VGLN Y+Q IA+RR +IGL P + N Sbjct: 265 ERVIKLVREAVELEVAYAWDCLPRGIVGLNGELFRDYVQHIADRRLERIGL-PTQYGSAN 323 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PFPWMSE +DL KEKNFFETRVTEYQ A L WD Sbjct: 324 PFPWMSETMDLGKEKNFFETRVTEYQSAASLAWD 357 >gi|118500933|gb|ABK97635.1| ribonucleoside diphosphate reductase beta subunit [Allochromatium vinosum DSM 180] Length = 280 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 187/280 (66%), Positives = 233/280 (83%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +D+NQL+P KY WAW+KYL AC NHWMP E+ M DLALWK +GLT+DERL++KRNLGF Sbjct: 1 ADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNADLALWKDPHGLTEDERLIVKRNLGF 60 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 F++++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA+H+H +QY++ SLGLDEGE+FNM Sbjct: 61 FSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVVESLGLDEGEIFNM 120 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 YREVP++ KA WAL +TQ L+ P F TGT + DQ+ L +L FYV+FEG++FY GF QI Sbjct: 121 YREVPAVARKAEWALPFTQHLADPHFQTGTPENDQKLLCELVAFYVIFEGIFFYVGFVQI 180 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 LS+GR NKM G AEQ+QYI+RDES+H+NFGIDVINQIKIENPHLWT +F+Q+ M+ EA Sbjct: 181 LSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQIKIENPHLWTPDFRQELVGMIREA 240 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 LE YAH+TMP+G +GLNA E Y+ FIANRRC QIG Sbjct: 241 VELEARYAHDTMPRGVLGLNAQMFEDYLHFIANRRCAQIG 280 >gi|325110864|ref|YP_004271932.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305] gi|324971132|gb|ADY61910.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305] Length = 353 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/344 (57%), Positives = 257/344 (74%), Gaps = 3/344 (0%) Query: 10 IQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + A R +KR++N A+ DVNQL+P+KY WAWE YL+ C NHWMPTEVPM D+ +W Sbjct: 12 LDAPTGRFKASEKRLINCAQVDVNQLMPIKYAWAWEHYLNGCANHWMPTEVPMTKDIEVW 71 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L+DDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLLRQAFEEAVH+ Sbjct: 72 KS-NKLSDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLLRQAFEEAVHT 130 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF Y++ SLGL EGE+FNMY EVP+I K + ++ T + S FTT T + Q FL++ Sbjct: 131 HTFLYVVDSLGLHEGEVFNMYHEVPAIARKDEFEMKLTAEVLSEDFTTETYEGRQTFLRN 190 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FYTGF ILS R N + GI EQ+QYI+RDE+ HLNFGID+IN IK E Sbjct: 191 LIGYYLIMEGIFFYTGFVMILSFHRRNLLTGIGEQFQYILRDETTHLNFGIDLINGIKHE 250 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT++FQQ+ ++ EA LEI YA + +P+G +GLN Y+Q IA+RR +IG Sbjct: 251 NPDIWTEKFQQEIIDLVKEAVELEIDYARDCLPRGVLGLNGNLFRDYVQHIADRRLERIG 310 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L L+ + NPFPWMSE +DL KEKNFFETRVTEYQ G L WD Sbjct: 311 LPTLYN-SSNPFPWMSETMDLAKEKNFFETRVTEYQTGGTLSWD 353 >gi|269839640|ref|YP_003324332.1| ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC BAA-798] gi|269791370|gb|ACZ43510.1| Ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC BAA-798] Length = 353 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/339 (58%), Positives = 254/339 (74%), Gaps = 3/339 (0%) Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +R+ V+DKR++N ++ DVNQL PLKY WAWE YL+ C NHWMPTEVPM D+ LW+S N Sbjct: 17 QRIRVEDKRLINCKAVDVNQLWPLKYAWAWEHYLNGCANHWMPTEVPMHKDIELWRS-NA 75 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT DERL+I RNLGFF++ ESLV NNIVLAI++H++NPE RQYLLRQAFEEA+H+H F Y Sbjct: 76 LTPDERLVIMRNLGFFSTGESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAIHTHAFHY 135 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLD E+FNMYREV SI K + + T+ + P FTT T + Q+F+++L FY Sbjct: 136 IVESLGLDGREVFNMYREVDSIKGKDEFVMSLTERVLDPDFTTETLEGIQDFIRNLVGFY 195 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 V+ EG++FY+GF ILS R N+M GI EQ+QYI+RDE++HLNFGID+IN IK ENP W Sbjct: 196 VIMEGIFFYSGFVMILSFHRQNRMTGIGEQFQYILRDETVHLNFGIDLINTIKEENPEAW 255 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T+E ++ M+ +A EIAYA E +P G +GLNA +Y+Q+IA+RR +I L P+ Sbjct: 256 TEELRRDLVGMIRQAVEYEIAYARECLPNGVLGLNADLFREYVQYIADRRLERIEL-PVQ 314 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 + NPFPWMSE +DL KEKNFFETRVTEYQ L WD Sbjct: 315 YRSRNPFPWMSETMDLPKEKNFFETRVTEYQNAGTLVWD 353 >gi|298243909|ref|ZP_06967716.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM 44963] gi|297556963|gb|EFH90827.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM 44963] Length = 361 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 194/332 (58%), Positives = 251/332 (75%), Gaps = 3/332 (0%) Query: 22 KRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KR++N DVNQL+PLKY WAWE YL+ C NHWMPTEVPM D+ W+S N LT ERL Sbjct: 32 KRLINGWHVDVNQLMPLKYRWAWEHYLNGCANHWMPTEVPMTKDIETWRS-NKLTAGERL 90 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I RNLGFFA++ESLV NN+VLAI++H++N ECRQYLLRQAFEEA+H+HTF YI+ SLGL Sbjct: 91 VIMRNLGFFATAESLVGNNLVLAIFKHITNAECRQYLLRQAFEEAIHTHTFLYIVESLGL 150 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E E+FNMY E+PSI K + +Q T + P F+T T + Q+FLQ+L +Y++ EG++ Sbjct: 151 SEHEVFNMYHEIPSIKEKDEFEMQLTSAVLDPDFSTETFEGMQKFLQNLIGYYIIMEGIF 210 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF +LS R N M G+ EQ+QYI+RDE++HLNFGID+IN IK ENP LWT EFQ Sbjct: 211 FYSGFVMMLSFHRRNLMTGVGEQFQYILRDETIHLNFGIDLINGIKAENPELWTTEFQAH 270 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ A LEIAYA++ +P G +GLNA S Y+Q +A+RR +IGL P+F ++ +PF Sbjct: 271 IYDLIKRAVELEIAYAYDCLPNGILGLNAESFRSYVQHVADRRLERIGLAPIF-HSSHPF 329 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PWMSE +DL KEKNFFETRVTEYQ + L+W+ Sbjct: 330 PWMSETMDLSKEKNFFETRVTEYQAASTLEWE 361 >gi|159899093|ref|YP_001545340.1| ribonucleotide-diphosphate reductase subunit beta [Herpetosiphon aurantiacus ATCC 23779] gi|159892132|gb|ABX05212.1| Ribonucleoside-diphosphate reductase [Herpetosiphon aurantiacus ATCC 23779] Length = 342 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 192/338 (56%), Positives = 254/338 (75%), Gaps = 3/338 (0%) Query: 16 RVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 R N DKR++N + DVNQL+PL+YGWAWE YL+ C NHWMP EV M D+A+W+S + L Sbjct: 7 RFNASDKRLINCNQVDVNQLMPLRYGWAWEHYLNGCANHWMPNEVSMTGDIAIWRSTS-L 65 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + DERLM+ RNLGFFA++ESLV NNIVLAI+RH++N ECRQYLLRQAFEEA+H+H F +I Sbjct: 66 SADERLMVLRNLGFFATAESLVGNNIVLAIFRHITNAECRQYLLRQAFEEAIHTHAFLHI 125 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGL+E E+FNMY E+P I+ K + +Q T + P F+T T Q F+++L +YV Sbjct: 126 VESLGLNEREIFNMYHEIPVISQKDQFEMQLTAAVLDPQFSTETLTGMQTFVKNLIGYYV 185 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY+GFA +LSL R N + GI EQ QYI+RDE++HLNFG+D+IN IK ENP +WT Sbjct: 186 IMEGIFFYSGFAMLLSLHRRNVLTGIGEQIQYILRDETIHLNFGVDLINGIKAENPAIWT 245 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EFQ + ++ ++ LE YA E +P+G +GL+A Y+Q+IA+RR +IGL + Sbjct: 246 NEFQAEIVQLIRQSVELEAQYAAECLPRGVMGLHAAMFRDYVQYIADRRLQRIGLAIQYG 305 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ++NPFPWMSE IDL KEKNFFETRVTEYQ A L+WD Sbjct: 306 -SQNPFPWMSETIDLTKEKNFFETRVTEYQSAASLEWD 342 >gi|15834835|ref|NP_296594.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum Nigg] gi|270285001|ref|ZP_06194395.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum Nigg] gi|270289024|ref|ZP_06195326.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum Weiss] gi|301336399|ref|ZP_07224601.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum MopnTet14] gi|14195147|sp|Q9PL92|RIR2_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|7190253|gb|AAF39087.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydia muridarum Nigg] Length = 346 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 196/343 (57%), Positives = 259/343 (75%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+ M D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-NVLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E SI AK ++ ++ T + P+F T + + QEF+++ Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERASIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFIKN 184 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKMVGI EQYQYI+RDE++HLNFG+D+IN IK E Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMVGIGEQYQYILRDETIHLNFGVDLINGIKEE 244 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E QQ+ M+ A LEI YA + +P+G +GL A Y+Q IA+RR +IG Sbjct: 245 NPEIWTTELQQEIIEMIQRAVDLEIDYARDCLPRGILGLRASMFIDYVQHIADRRLERIG 304 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +T+NPFPWMSE IDL KEKNFFETRVTEYQ A L W Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346 >gi|166154172|ref|YP_001654290.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 434/Bu] gi|166155047|ref|YP_001653302.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335416|ref|ZP_07223660.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis L2tet1] gi|165930160|emb|CAP03644.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis 434/Bu] gi|165931035|emb|CAP06598.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 346 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/343 (56%), Positives = 260/343 (75%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F T + + QEF+++ Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E QQ+ ++ A LEI YA + +P+G +GL A Y+Q IA+RR +IG Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +T+NPFPWMSE IDL KEKNFFETRVTEYQ A L W Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346 >gi|189219089|ref|YP_001939730.1| ribonucleotide-diphosphate reductase subunit beta [Methylacidiphilum infernorum V4] gi|189185947|gb|ACD83132.1| Ribonucleotide reductase, beta subunit [Methylacidiphilum infernorum V4] Length = 361 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/339 (57%), Positives = 262/339 (77%), Gaps = 3/339 (0%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +KR+NV++KR++N ++ DVNQL+PLKY WAWE YL+ C N+W+P+EVPMQ D+ LWKS N Sbjct: 25 KKRINVEEKRLINCKAVDVNQLMPLKYKWAWEHYLNGCANNWLPSEVPMQRDVELWKS-N 83 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L++DERL+I RNLGFFA+ ESLV NNIVLAI++ ++N E RQYLLRQA+EEAVH+H F Sbjct: 84 RLSNDERLVIMRNLGFFATGESLVGNNIVLAIFKFVTNAEARQYLLRQAYEEAVHTHAFL 143 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI+ SLGLDE E+FNMY EV SI+ K + + T+ + F T + + Q+F+++L F Sbjct: 144 YIVESLGLDEREVFNMYHEVNSISNKDQFEMTLTEDILREGFNTESVENIQKFVKNLVGF 203 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 YV+ EG++FY+GFA ILS R NKM GI EQ+QYI+RDE++HLNFGID+IN I+ ENP + Sbjct: 204 YVIMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIREENPEI 263 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 WT FQ++ M+ E+ LE AYA + +P+G +GLN+ + Y+++IA+RR +IG + Sbjct: 264 WTAGFQKEIEEMIDESVRLEYAYARDCLPRGILGLNSALFKDYVEYIADRRLERIGFKAK 323 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 + ++NPFPWMSEV+DL KEKNFFETRVTEYQ GA L W Sbjct: 324 YG-SKNPFPWMSEVMDLVKEKNFFETRVTEYQSGAVLNW 361 >gi|282890382|ref|ZP_06298910.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499764|gb|EFB42055.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 350 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 199/339 (58%), Positives = 253/339 (74%), Gaps = 3/339 (0%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E KR+LN + DVNQL+PLKY WAWE YL+ C+N+WMP+EVPMQ D+ LWKS N Sbjct: 14 EAEAAAQQKRILNCKQVDVNQLMPLKYHWAWEHYLNGCHNNWMPSEVPMQKDIELWKS-N 72 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L++DERL+I RNLGFF+++ESLV NNIVLAI++HL+N E RQYLLRQAFEEAVH+HTF Sbjct: 73 RLSNDERLVIMRNLGFFSTAESLVGNNIVLAIFKHLTNAEARQYLLRQAFEEAVHTHTFH 132 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI+ SL LD+ E+F+MY V SI AK + ++ T+ + FTT T + Q FL++L F Sbjct: 133 YIVESLSLDQREVFDMYNAVNSIHAKDAFEMKLTEEVMQEGFTTDTPEGVQTFLKNLIGF 192 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 Y++ EG++FY+GF ILS R N M GI EQ+QYI+RDES+HLNFGID+IN IK ENP + Sbjct: 193 YIIMEGIFFYSGFVMILSFHRKNIMTGIGEQFQYILRDESIHLNFGIDLINTIKEENPEV 252 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 WT EF+ + M+ EA LEI YA + +P G +GLNA Y+ +IA+RR +IGL+P Sbjct: 253 WTPEFKDQIIDMVKEAVELEIQYAADCLPNGILGLNAALFRDYVGYIADRRLERIGLKPQ 312 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 + T NPFPWMSEV+DL KEKNFFETRVT+YQ GA L W Sbjct: 313 YN-TANPFPWMSEVMDLDKEKNFFETRVTQYQSGAALVW 350 >gi|15605563|ref|NP_220349.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis D/UW-3/CX] gi|255311668|ref|ZP_05354238.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 6276] gi|255317969|ref|ZP_05359215.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 6276s] gi|14195107|sp|O84835|RIR2_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|51247460|pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide Reductase From Chlamydia Trachomatis gi|3329298|gb|AAC68425.1| Ribonucleoside Reductase, Small Chain [Chlamydia trachomatis D/UW-3/CX] gi|296436383|gb|ADH18557.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/9768] gi|296437314|gb|ADH19484.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/11222] gi|296438242|gb|ADH20403.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/11074] gi|297140743|gb|ADH97501.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/9301] gi|297748957|gb|ADI51503.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis D-EC] gi|297749837|gb|ADI52515.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis D-LC] Length = 346 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 193/343 (56%), Positives = 259/343 (75%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F T + + QEF+++ Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E QQ+ ++ A LEI YA + +P+G +GL A Y+Q IA+RR +IG Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ A L W Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346 >gi|76789573|ref|YP_328659.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis A/HAR-13] gi|237803260|ref|YP_002888454.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis B/Jali20/OT] gi|237805181|ref|YP_002889335.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis B/TZ1A828/OT] gi|255349232|ref|ZP_05381239.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 70] gi|255503769|ref|ZP_05382159.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 70s] gi|255507450|ref|ZP_05383089.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis D(s)2923] gi|76168103|gb|AAX51111.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis A/HAR-13] gi|231273481|emb|CAX10397.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis B/TZ1A828/OT] gi|231274494|emb|CAX11290.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis B/Jali20/OT] gi|289525874|emb|CBJ15356.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis Sweden2] gi|296435459|gb|ADH17637.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis E/150] gi|296439176|gb|ADH21329.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis E/11023] Length = 346 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 193/343 (56%), Positives = 259/343 (75%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F T + + QEF+++ Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E QQ+ ++ A LEI YA + +P+G +GL A Y+Q IA+RR +IG Sbjct: 245 NPGIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ A L W Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346 >gi|297621807|ref|YP_003709944.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia chondrophila WSU 86-1044] gi|297377108|gb|ADI38938.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia chondrophila WSU 86-1044] Length = 344 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 193/338 (57%), Positives = 256/338 (75%), Gaps = 5/338 (1%) Query: 16 RVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 R D K+++N + DVNQLLPLKY WAWE YL+ C NHWMP+EVPM D+ WKS + + Sbjct: 11 RFRSDQKKLINCSEVDVNQLLPLKYKWAWEHYLNGCANHWMPSEVPMTKDIETWKS-DSI 69 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 ++DERL+IKRNLGFFA++ESLVANN+VLAI++H++N ECRQYLLRQAFEEA+HSH F YI Sbjct: 70 SEDERLLIKRNLGFFATAESLVANNLVLAIFKHVTNAECRQYLLRQAFEEALHSHAFLYI 129 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGL+E E+FNMYRE+ +I+ K + +Q T+ L T T Q+FL++L +Y+ Sbjct: 130 VDSLGLEEQEIFNMYREISTISEKDEFEMQLTKGLIDGE--TKTLAGKQQFLKNLVGYYI 187 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY+GFA +LSL R N M GI EQ+QYI+RDE++HLNFGID+IN IK ENP +W Sbjct: 188 IMEGIFFYSGFAMVLSLHRRNIMPGIGEQFQYILRDETIHLNFGIDLINGIKAENPEIWN 247 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 ++ + ++ +A LEIAYA E +P G +GLNA +Y+Q++A+RR +IGL ++K Sbjct: 248 EDLTDEINGLVQQAVELEIAYAKECLPHGVLGLNAGLFVEYVQYVADRRLERIGLSAIYK 307 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 + NPFPWMSE +DL KEKNFFETRVTEYQ A L WD Sbjct: 308 -SSNPFPWMSETMDLTKEKNFFETRVTEYQSAAVLSWD 344 >gi|112489977|pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide Reductase R2 From Chlamydia Trachomatis Length = 346 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 192/343 (55%), Positives = 259/343 (75%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HT+ YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F T + + QEF+++ Sbjct: 125 HTYLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E QQ+ ++ A LEI YA + +P+G +GL A Y+Q IA+RR +IG Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ A L W Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346 >gi|330949820|gb|EGH50080.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae Cit 7] Length = 359 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 175/291 (60%), Positives = 231/291 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT + D+E Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296 KIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y+ Sbjct: 309 KIENPHLWDAEMKKEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYL 359 >gi|29840533|ref|NP_829639.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila caviae GPIC] gi|29834882|gb|AAP05517.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila caviae GPIC] Length = 346 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 189/338 (55%), Positives = 258/338 (76%), Gaps = 3/338 (0%) Query: 15 KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV ++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LWKS N Sbjct: 11 KRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-ND 69 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 129 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I SLGLDEGE+FN Y E +I AK ++ + T + +P+F+T + + ++F+++L +Y Sbjct: 130 ICESLGLDEGEVFNAYNERATIKAKDDFQMTLTVDVLNPNFSTDSVEGLRQFIKNLVGYY 189 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 249 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++E Q + ++ +A LEI YA + +P+G +GL + Y++ IA+RR +IGL+P++ Sbjct: 250 SQELQDEIIALIQKAVDLEIEYAKDCLPRGILGLKSSMFIDYVRHIADRRLERIGLKPIY 309 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Y++NPFPWMSE IDL KEKNFFETRVTEYQ L W Sbjct: 310 -YSKNPFPWMSETIDLNKEKNFFETRVTEYQTSGNLSW 346 >gi|149173739|ref|ZP_01852368.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces maris DSM 8797] gi|148847269|gb|EDL61603.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces maris DSM 8797] Length = 359 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/352 (56%), Positives = 250/352 (71%), Gaps = 4/352 (1%) Query: 3 NNTGLSPI-QAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + T +SP+ R D KR++N ++ DVNQL+PLKY WAWE YL+ C NHWMPTEV Sbjct: 10 SKTPVSPVGDTPTGRFKADKKRLINCSQVDVNQLMPLKYHWAWEHYLNGCANHWMPTEVG 69 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ W+S L++ ER +I RNLGFFA++ESLVANNIVLAI++H++N ECRQYLLRQ Sbjct: 70 MTKDIETWRSSK-LSEGERFVIMRNLGFFATAESLVANNIVLAIFKHVTNAECRQYLLRQ 128 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEAVHSHTF YI+ SLGL+E E+FNMY EVP+I K ++ T + FTT T + Sbjct: 129 AFEEAVHSHTFLYIVESLGLNESEVFNMYHEVPAIAKKDQLEMELTSEILDHDFTTDTFE 188 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 Q FL++L +Y++ EG++FYTGF +LS R N M GI EQ+QYI+RDE++HLNFGID Sbjct: 189 GAQAFLKNLIGYYLIMEGLFFYTGFVMVLSFHRRNMMTGIGEQFQYILRDETIHLNFGID 248 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +IN IK ENP LWT EFQQ + A LEI YA + +P G +GLN +Y+Q IA Sbjct: 249 LINGIKQENPDLWTPEFQQLIIDRMKYAAELEIEYAKDCLPTGILGLNGELFREYVQHIA 308 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +RR +IGL P + NPFPWMSE +DL KEKNFFETRVTEYQ L WD Sbjct: 309 DRRLERIGL-PAQYGSANPFPWMSETMDLSKEKNFFETRVTEYQSSGSLNWD 359 >gi|313848275|emb|CBY17276.1| putative ibonucleoside reductase small subunit [Chlamydophila psittaci RD1] Length = 349 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/343 (55%), Positives = 256/343 (74%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 69 KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F+T + + +F+++ Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 187 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E Q + ++ +A LEI YA + +P+G +GL A Y++ IA+RR +IG Sbjct: 248 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 307 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ A L W Sbjct: 308 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 349 >gi|329943118|ref|ZP_08291892.1| ribonucleotide reductase, small chain family protein [Chlamydophila psittaci Cal10] gi|332287701|ref|YP_004422602.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC] gi|325507260|gb|ADZ18898.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC] gi|328814665|gb|EGF84655.1| ribonucleotide reductase, small chain family protein [Chlamydophila psittaci Cal10] gi|328914953|gb|AEB55786.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila psittaci 6BC] Length = 346 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/343 (55%), Positives = 256/343 (74%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 6 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F+T + + +F+++ Sbjct: 125 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 184 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 244 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E Q + ++ +A LEI YA + +P+G +GL A Y++ IA+RR +IG Sbjct: 245 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 304 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ A L W Sbjct: 305 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 346 >gi|89898045|ref|YP_515155.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila felis Fe/C-56] gi|89331417|dbj|BAE81010.1| ribonucleoside-diphosphate reductase beta chain [Chlamydophila felis Fe/C-56] Length = 349 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 188/343 (54%), Positives = 259/343 (75%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIDLW 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 69 KS-NELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEVRQYLLRQAFEEAVHT 127 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E +I AK ++ + T+ + P+F+T T + ++F+++ Sbjct: 128 HTFLYICESLGLDESEVFNAYNERATIKAKDDFQMDLTRDVLDPNFSTHTIENLRQFIKN 187 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +W+++ Q + ++ +A LEI YA + +P+G +GL + Y++ IA+RR +IG Sbjct: 248 NPEVWSQQLQDEIVDLIQKAVDLEIEYARDCLPRGILGLRSSMFIDYVRHIADRRLERIG 307 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ ++NPFPWMSE IDL KEKNFFETRVTEYQ A L W Sbjct: 308 LKPIYN-SKNPFPWMSETIDLNKEKNFFETRVTEYQTAANLNW 349 >gi|62185356|ref|YP_220141.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila abortus S26/3] gi|62148423|emb|CAH64191.1| putative ibonucleoside reductase small subunit [Chlamydophila abortus S26/3] Length = 349 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 188/343 (54%), Positives = 255/343 (74%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N + DVNQL+P+KY WAWE Y++ C N W+PTEVPM D+ LW Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYVNGCANTWLPTEVPMARDIELW 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 69 KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F+T + + +F+++ Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 187 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E Q + ++ +A LEI YA + +P+G +GL A Y++ IA+RR +IG Sbjct: 248 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 307 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ A L W Sbjct: 308 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 349 >gi|330443801|ref|YP_004376787.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydophila pecorum E58] gi|328806911|gb|AEB41084.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila pecorum E58] Length = 346 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 187/338 (55%), Positives = 257/338 (76%), Gaps = 3/338 (0%) Query: 15 KRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV++++KR++N ++ DVNQL+P+KY WAWE YL+ C N+W+PTE+ M D+ LWKS NG Sbjct: 11 KRVHINNKRLVNCSQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMARDIELWKS-NG 69 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ TF Y Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTQTFLY 129 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I SL LDE E+FN Y E SI AK ++ + T + P+F+T + + ++F+++L +Y Sbjct: 130 ICESLSLDEAEVFNAYNERESIKAKDDFQMTLTVDVLDPNFSTDSIEGLRKFIKNLVGYY 189 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W Sbjct: 190 LIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 249 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +KE Q++ ++ A LEI YA + +PKG +GL + Y++ IA+RR +IGL+P++ Sbjct: 250 SKELQEEIIALIETAVGLEIDYAKDCLPKGILGLKSSMFIDYVRHIADRRLERIGLKPIY 309 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 ++NPFPWMSE +DL KEKNFFETRVTEYQ A L W Sbjct: 310 N-SKNPFPWMSETMDLNKEKNFFETRVTEYQTAASLSW 346 >gi|33242353|ref|NP_877294.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae TW-183] gi|33236864|gb|AAP98951.1| ribonucleoside reductase small chain [Chlamydophila pneumoniae TW-183] Length = 365 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/338 (55%), Positives = 252/338 (74%), Gaps = 3/338 (0%) Query: 15 KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV V K ++N + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LWKS + Sbjct: 30 KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 88 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y Sbjct: 89 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 148 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I SLGLDEGE+FN Y E SI AK ++ + T + P+F+ + + +F+++L +Y Sbjct: 149 ICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKNLVGYY 208 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W Sbjct: 209 IIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 268 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T E Q++ ++ +A LEI YA + +P+G +GL + Y++ IA+RR +IGL+P++ Sbjct: 269 TTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIGLKPIY 328 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 ++ NPFPWMSE +DL KEKNFFETRVTEYQ L W Sbjct: 329 -HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 365 >gi|15618893|ref|NP_225179.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae CWL029] gi|15836516|ref|NP_301040.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae J138] gi|16752043|ref|NP_445409.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae AR39] gi|14195165|sp|Q9Z6S4|RIR2_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|4377313|gb|AAD19122.1| Ribonucleoside Reductase, Small Chain [Chlamydophila pneumoniae CWL029] gi|7189783|gb|AAF38660.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila pneumoniae AR39] gi|8979358|dbj|BAA99192.1| ribonucleoside reductase, small chain [Chlamydophila pneumoniae J138] gi|269302786|gb|ACZ32886.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila pneumoniae LPCoLN] Length = 346 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/338 (55%), Positives = 252/338 (74%), Gaps = 3/338 (0%) Query: 15 KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV V K ++N + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LWKS + Sbjct: 11 KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 69 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 129 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I SLGLDEGE+FN Y E SI AK ++ + T + P+F+ + + +F+++L +Y Sbjct: 130 ICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKNLVGYY 189 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 249 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T E Q++ ++ +A LEI YA + +P+G +GL + Y++ IA+RR +IGL+P++ Sbjct: 250 TTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIGLKPIY 309 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 ++ NPFPWMSE +DL KEKNFFETRVTEYQ L W Sbjct: 310 -HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 346 >gi|241589542|ref|YP_002979567.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D] gi|240868254|gb|ACS65913.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D] Length = 328 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 178/293 (60%), Positives = 224/293 (76%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A KRVNV +KR++N +DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK Sbjct: 17 ATAKRVNVAEKRIINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMARDIALWKDP 76 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H + Sbjct: 77 NGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 136 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + D++ L+ L V Sbjct: 137 QYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDRKLLKSLIV 196 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPH Sbjct: 197 FACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPH 256 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 LWT EF+ + + +A LE YA +TMP+G +GLNA + Y++FI NRRC Sbjct: 257 LWTAEFKVEITELFKQAVDLEYRYAEDTMPRGVLGLNASMFKGYLRFICNRRC 309 >gi|330941351|gb|EGH44203.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 317 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 158/248 (63%), Positives = 202/248 (81%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADT 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT + D+E Sbjct: 189 IHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDKEL 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 308 Query: 246 KIENPHLW 253 KIENPHLW Sbjct: 309 KIENPHLW 316 >gi|87311395|ref|ZP_01093515.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula marina DSM 3645] gi|87285807|gb|EAQ77721.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula marina DSM 3645] Length = 313 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 167/296 (56%), Positives = 225/296 (76%), Gaps = 2/296 (0%) Query: 15 KRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RV +DKR++N ++ DVNQL+PLKY WAWE Y++ C NHWMPTEVPM D+ W+S + Sbjct: 16 QRVRANDKRLVNCSQVDVNQLMPLKYNWAWEHYMNGCANHWMPTEVPMTKDIETWRS-DK 74 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LTDDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLLRQAFEEAVHSHTF Y Sbjct: 75 LTDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLLRQAFEEAVHSHTFLY 134 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ SLGL+EGE+FNMY EVP+I K + ++ T + SP F+T + + Q FL++L +Y Sbjct: 135 VVESLGLNEGEIFNMYNEVPAIARKDQFEMKLTAEVLSPDFSTDSYEGLQAFLKNLIGYY 194 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FYTGF +LS R N M GI EQ+QYI+RDE++HLNFGID+IN IK ENP LW Sbjct: 195 IIMEGIFFYTGFVMVLSFHRRNLMTGIGEQFQYILRDETVHLNFGIDLINGIKAENPDLW 254 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 T EFQ + ++ +A LEI YA + +P G +GLN Y+ ++A+RR +IGL Sbjct: 255 TAEFQAEIIDLIKQAVELEIEYAGDCLPNGILGLNRDLFRDYVHYVADRRVERIGL 310 >gi|322368525|ref|ZP_08043093.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus paucihalophilus DX253] gi|320551809|gb|EFW93455.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus paucihalophilus DX253] Length = 330 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 165/322 (51%), Positives = 225/322 (69%), Gaps = 2/322 (0%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D N++LPL Y WA + Y + NN+W+P E+PMQDD++ W + L+D ER +I+ NLGFF Sbjct: 11 DPNKILPLDYDWARDYYEAGVNNNWVPEEIPMQDDISQWNG-DALSDAERQLIEWNLGFF 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG D L+ MY Sbjct: 70 STAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPDYLYGMY 129 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 VPSI K + + T+ + P FT T +EFL+DL FYV+ EG++FY GFA +L Sbjct: 130 DRVPSIAEKDEFVVDLTRAIDRPDFTIETDADVREFLRDLVGFYVIMEGVFFYAGFAMML 189 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 L R NKMVGI +Q++YI+RDESLH+ FG+D+IN+I+ ENP+ WT F + ++ A Sbjct: 190 GLKRQNKMVGIGQQFEYILRDESLHVGFGVDLINEIRAENPNAWTDAFGDEVTDLITNAV 249 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 LE YA+E P +G++A +Y++ IA+RR Q+ L+ + TENPFPWMSE +DL Sbjct: 250 ELEKIYAYEACPDEILGMSAAQFAEYVEHIADRRLAQLDLDEQYG-TENPFPWMSEQVDL 308 Query: 330 KKEKNFFETRVTEYQQGAELKW 351 KEKNFFET+VTEYQ G L W Sbjct: 309 NKEKNFFETQVTEYQSGGSLDW 330 >gi|257053403|ref|YP_003131236.1| ribonucleotide-diphosphate reductase subunit beta [Halorhabdus utahensis DSM 12940] gi|256692166|gb|ACV12503.1| Ribonucleoside-diphosphate reductase [Halorhabdus utahensis DSM 12940] Length = 330 Score = 352 bits (903), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 164/325 (50%), Positives = 225/325 (69%), Gaps = 2/325 (0%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 A D N++LP+ Y WA E Y + NN+W+P E+PMQDD+A W LTD ER +++ NL Sbjct: 8 AEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVAQWNGDE-LTDAERQLVEWNL 66 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146 GFF+++ESL ANN+VLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG + L+ Sbjct: 67 GFFSTAESLTANNLVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPEYLY 126 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 MY VPSI K + + T+++ P FT ++ L+DL FYV+ EG++FY GFA Sbjct: 127 GMYDRVPSIEEKDQFVVDLTRSIDDPEFTIDGDSDVRDLLRDLVGFYVIMEGIFFYAGFA 186 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 +L L R NKMVGI +Q++YIMRDESLH+ FG+D+I+QI+ ENP +WT EF + ++ Sbjct: 187 MMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRTENPGVWTDEFDSEVIDLIK 246 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 EA LE YA E P+ +G++ Y+++IA+RR Q+ L + TENPFPWMSE Sbjct: 247 EAVELEQIYAREACPEEILGMSGSQFADYVEYIADRRLDQLDLPEQYG-TENPFPWMSEQ 305 Query: 327 IDLKKEKNFFETRVTEYQQGAELKW 351 +DL KEKNFFET+VTEYQ G L+W Sbjct: 306 VDLNKEKNFFETQVTEYQSGGSLEW 330 >gi|300709535|ref|YP_003735349.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus jeotgali B3] gi|299123218|gb|ADJ13557.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus jeotgali B3] Length = 330 Score = 351 bits (901), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 162/330 (49%), Positives = 228/330 (69%), Gaps = 4/330 (1%) Query: 24 MLNARS--DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 ++N S D N++LP+ Y WA E Y + N+W P EVPM DD+ W++ L+ +ER + Sbjct: 3 LINTESHHDPNKILPIDYDWAREYYKAGVANNWTPEEVPMADDVHQWENDE-LSSEERQL 61 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 ++ NLGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y SLG D Sbjct: 62 VEWNLGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFD 121 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 L+ MY +P+I AK + + TQ + P F + + +EFL+DL FYV+ EG++F Sbjct: 122 PEYLYGMYDRIPAIEAKDEFVVDLTQVIDDPDFEISSDEDVREFLRDLVGFYVIMEGIFF 181 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y GFA +L L R KMVG+ EQ++YIMRDESLHLNFG+D+IN ++ EN +WT F+ + Sbjct: 182 YAGFAMMLGLKRQGKMVGVGEQFEYIMRDESLHLNFGVDLINTVREENSGIWTDVFEAEI 241 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 +L EA LE YA E P+ +G+ +Y++++A+RR Q+G+EP++ T+NPFP Sbjct: 242 EGLLREAVELERTYAREACPEEVLGMGPAQFAEYVEYVADRRLDQLGMEPVYD-TDNPFP 300 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 WM+E +DL KEKNFFET V EYQ G L+W Sbjct: 301 WMAEQVDLNKEKNFFETNVAEYQSGGSLEW 330 >gi|289582310|ref|YP_003480776.1| ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099] gi|289531863|gb|ADD06214.1| Ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099] Length = 330 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 160/326 (49%), Positives = 228/326 (69%), Gaps = 2/326 (0%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +A D N++LP+ Y WA E Y + NN+W+P E+PMQDD++ W + L+D ER +++ N Sbjct: 7 DAEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVSQWNG-DALSDAERQLVEWN 65 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 LGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y SLG + + Sbjct: 66 LGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPDYM 125 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 + MY +PSI K + + T+ ++ F T + ++F++DL FYV+ EG++FY GF Sbjct: 126 YGMYDRIPSIAEKDEFVIDLTRVINQNGFVIETDEDLRDFIRDLVGFYVIMEGIFFYAGF 185 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A +L L R NKMVGI +Q++YIMRDESLH+ FG+D+I+QI++ENP +WT F + ++ Sbjct: 186 AMMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRMENPDVWTDAFGDEVVELI 245 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 EA LE YA+E P +G++A +Y++ IA+RR Q+ L P T+NPFPW+SE Sbjct: 246 TEAVELEKIYAYEACPDEILGMSADQFAEYVEHIADRRLGQLDL-PTQYGTDNPFPWLSE 304 Query: 326 VIDLKKEKNFFETRVTEYQQGAELKW 351 +DL KEKNFFET+VTEYQ G L W Sbjct: 305 QVDLNKEKNFFETQVTEYQSGGSLDW 330 >gi|313117005|ref|YP_004038129.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense DSM 11551] gi|312294957|gb|ADQ68993.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense DSM 11551] Length = 330 Score = 347 bits (890), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 160/326 (49%), Positives = 223/326 (68%), Gaps = 2/326 (0%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 + D N++LP+ Y WA + Y N+W+P E+PMQ+D+A W + L+D E+ +++ N Sbjct: 7 DTEHDPNKILPIDYDWARQYYRDGVANNWVPEEIPMQEDIAQWNG-DALSDSEKQLVEWN 65 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 LGFF+++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG D + Sbjct: 66 LGFFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEYM 125 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 + MY VPSI K + + T+ L P FT ++ L+DL FYVV EG++FY GF Sbjct: 126 YGMYDRVPSIKEKDEFVVDLTRNLDDPDFTVEDTADVRDLLRDLVGFYVVMEGVFFYAGF 185 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A +L+L R NKMVGI +Q++YIMRDESLH+ FG+D+INQI+ ENP WT EF + R ++ Sbjct: 186 AMMLALKRQNKMVGIGQQFEYIMRDESLHVGFGVDLINQIRAENPDAWTDEFGAEVRDLI 245 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 +A LE YA E P +G++ +Y++ +A+RR Q+ L+ + T+NPFPWMSE Sbjct: 246 EKAVDLEQIYAREACPDDVLGMSPDQFAEYVEHVADRRLGQLDLDASYG-TDNPFPWMSE 304 Query: 326 VIDLKKEKNFFETRVTEYQQGAELKW 351 +DL KEKNFFET+VTEYQ G L W Sbjct: 305 AVDLNKEKNFFETQVTEYQSGGSLDW 330 >gi|289677030|ref|ZP_06497920.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae FF5] Length = 243 Score = 345 bits (886), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 153/243 (62%), Positives = 192/243 (79%) Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 NPE RQY+LRQAFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++ Sbjct: 1 NPEGRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSI 60 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 S P F TGT D D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+R Sbjct: 61 SDPKFETGTVDTDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILR 120 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DES+HLNFGIDVINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA Sbjct: 121 DESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNA 180 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 E Y++FIANRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L Sbjct: 181 AMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGAL 240 Query: 350 KWD 352 WD Sbjct: 241 SWD 243 >gi|15791173|ref|NP_280997.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium sp. NRC-1] gi|169236929|ref|YP_001690129.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium salinarum R1] gi|10581791|gb|AAG20477.1| ribonucleoside reductase small chain [Halobacterium sp. NRC-1] gi|167727995|emb|CAP14783.1| ribonucleoside-diphosphate reductase beta subunit [Halobacterium salinarum R1] Length = 331 Score = 335 bits (858), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 159/327 (48%), Positives = 228/327 (69%), Gaps = 2/327 (0%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +A D N++LP+ Y WA E Y N+W P EV MQ D++ W+ N LTD ER +++ N Sbjct: 7 DAEHDPNKILPIDYDWAREYYQQGVANNWTPEEVAMQGDISQWQG-NELTDAERQLVEWN 65 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 LGFF+++ESL ANNIVLAIY +++ PECRQYLLRQA+EEAVH+ TF Y SLG D + Sbjct: 66 LGFFSTAESLTANNIVLAIYEYVTAPECRQYLLRQAYEEAVHTDTFIYCCDSLGFDPEHM 125 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 + MY +PSI K + + T+ + +FT T D ++FL+DL FYV+ EG++FY GF Sbjct: 126 YGMYDRIPSIAEKDEFVVGLTRAVDDQAFTIDTDDDLRDFLRDLVGFYVIMEGIFFYAGF 185 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A +L+L R KMVG+ EQ++YIMRDESLHLNFG+D+INQI+ E+P +WT +F+ + +++ Sbjct: 186 AMMLALKRRGKMVGVGEQFEYIMRDESLHLNFGVDLINQIRDEHPDVWTADFEAEVNSLM 245 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 +A LE YA + P +G+++ Y++++A+RR Q+ ++P++ T+NPFPWM+E Sbjct: 246 RDAVDLEQLYARDACPDDLLGMSSEQFADYVEYVADRRFQQLRMDPVYG-TDNPFPWMTE 304 Query: 326 VIDLKKEKNFFETRVTEYQQGAELKWD 352 +DL E NFFE V+EYQQG L WD Sbjct: 305 QVDLNTETNFFERNVSEYQQGGSLDWD 331 >gi|115525181|ref|YP_782092.1| ribonucleotide reductase [Rhodopseudomonas palustris BisA53] gi|115519128|gb|ABJ07112.1| ribonucleotide reductase [Rhodopseudomonas palustris BisA53] Length = 223 Score = 298 bits (764), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 137/189 (72%), Positives = 153/189 (80%) Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 ++TQ L P+F TGT +AD+ FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQ Sbjct: 35 KHTQHLDDPTFVTGTVEADRAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQ 94 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 YQYI+RDES+HLNFGID+INQIKIENP LWT FQ++ R ML EA LE AY +TMP+G Sbjct: 95 YQYILRDESIHLNFGIDIINQIKIENPELWTAGFQEELRGMLREAAELEAAYCRDTMPRG 154 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 F GLNA CEQYM FI NRRC Q+GL P+F ENPFPWMSE +DLKKEKNFFETRV EY Sbjct: 155 FFGLNAALCEQYMHFITNRRCAQLGLAPIFAEVENPFPWMSETMDLKKEKNFFETRVIEY 214 Query: 344 QQGAELKWD 352 Q G L WD Sbjct: 215 QNGGALTWD 223 >gi|153875510|ref|ZP_02003277.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp. PS] gi|152068026|gb|EDN66723.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp. PS] Length = 374 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 142/354 (40%), Positives = 219/354 (61%), Gaps = 8/354 (2%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 ++ L I G KR + D +++ R DV Q +P+KY E++L+A N W+P E+PM Sbjct: 24 SSSLDAISIGTKRPSSSDIKIIGGRGYDVRQPIPVKYTSVRERFLNARKNFWIPNEIPMG 83 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 +D W + LT+ E + K N+ + +S++LV +N+ AI +H++ E RQY Q Sbjct: 84 EDKLQWNT-GLLTEAEMWLFKSNISYLTASDNLVPDNLDNAILKHITANEMRQYFRHQIM 142 Query: 123 EEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 EE+ H ++ +I+ S GLDE G++FN+Y+EVP++T K NW L +T + + GT Sbjct: 143 EESNHIESYLFILESFGLDEKGQGQIFNLYQEVPALTEKLNWNLTFTNNVVNSEAPRGTL 202 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 +A++ L+DL +Y+ FE ++F GF+QI +L R K+ A+QY YI RDE+LH + G+ Sbjct: 203 EANRALLEDLISYYI-FEYLFFPLGFSQIFALARKGKLRNTAQQYSYIWRDENLHSSNGL 261 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQF 298 +I QI EN LW Q++SR ++ EA LE YAH +MP+ G VGL + ++ F Sbjct: 262 WLIKQIIQENHELWDSTMQERSRAIVSEAVKLETDYAHASMPEGGIVGLPVKTYIKFSHF 321 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +A+ C +G++PLF+ E+P PW+SE +L E NFFE RV EYQ G++L WD Sbjct: 322 VADNICKNLGIKPLFRVREHPMPWISEY-ELNHEVNFFEGRVREYQTGSQLTWD 374 >gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254039813|gb|ACT56609.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254040683|gb|ACT57479.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 125 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 125/125 (100%), Positives = 125/125 (100%) Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL Sbjct: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA Sbjct: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120 Query: 348 ELKWD 352 ELKWD Sbjct: 121 ELKWD 125 >gi|311696539|gb|ADP99412.1| ribonucleotide-diphosphate reductase beta subunit [marine bacterium HP15] Length = 352 Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 197/336 (58%), Gaps = 7/336 (2%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M D+ + + LT Sbjct: 23 VNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHHR--LTA 80 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ + + L + +S+ L NI LA+ +S PE + Y RQ +EEA+H+ +Q+ I Sbjct: 81 PEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEAMHTWAYQHCIE 140 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 +L LD+ E++N YR VP+I K A + P KD QEF+ F VF Sbjct: 141 TLNLDQSEIYNRYRVVPAINGKIQIANRRLDAAMRPDMNLRNKDDLQEFIMSYLFFAAVF 200 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG WFY GF+ I +L R M G EQ QYI+RDE++H +FG+ V+NQI +E ++ Sbjct: 201 EGTWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQI-VEEENI---T 256 Query: 257 FQQKS-RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 F K+ R M E+ E AYA + +G +A + +F+ANRR +GLE F Sbjct: 257 FDPKAVREMWDESEAAEKAYADYILRDPILGYSAEYHSEQFRFVANRRARTVGLEEPFPG 316 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 +N PW+ E L+KEKNFFETRV EYQ GA+L+W Sbjct: 317 AKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352 >gi|94986920|ref|YP_594853.1| ribonucleotide reductase, beta subunit [Lawsonia intracellularis PHE/MN1-00] gi|94731169|emb|CAJ54531.1| Ribonucleotide reductase, beta subunit [Lawsonia intracellularis PHE/MN1-00] Length = 333 Score = 265 bits (677), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 142/337 (42%), Positives = 196/337 (58%), Gaps = 7/337 (2%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VN DKR++N ++D+NQLLP +Y WAW+ +L A NHW P E+ M D+ + + LT Sbjct: 3 VNASDKRIVNGKTDINQLLPFRYPWAWDFFLKANQNHWTPLEISMSQDV--YDYNHTLTT 60 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +ER + L + +S+ L NI LA+ ++ PE + Y RQ +EEA+H+ T+Q+ I Sbjct: 61 NERHVFDNVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHCIE 120 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 SLGL++ E++N YR VP I K + + + + KD EF+ F +F Sbjct: 121 SLGLEQSEIYNRYRVVPEIYGKILLSNKRLEQVLRSDINLSDKDNLHEFIMSYIFFAAIF 180 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ-IKIENPHLWTK 255 EG WFY GF+ I SL R M G AEQ+QYI+RDE LH FGI VI I+ EN L Sbjct: 181 EGCWFYNGFSPIFSLQRRGLMKGTAEQFQYILRDEVLHCTFGITVIKGLIEEENITLDPT 240 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +Q + E EIAYA+ + + +G NA +FIANRR Q+G++ F Sbjct: 241 AVRQ----LWDEVEAAEIAYANYILHEPIIGYNADLHIGQFRFIANRRSRQLGMKEPFPG 296 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +N PW+ E +L+KEKNFFETRVTEYQ G LKWD Sbjct: 297 AKNVLPWLDEQSNLRKEKNFFETRVTEYQTGGGLKWD 333 >gi|149375674|ref|ZP_01893443.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola DG893] gi|149360076|gb|EDM48531.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola DG893] Length = 352 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 143/350 (40%), Positives = 199/350 (56%), Gaps = 8/350 (2%) Query: 4 NTGLSPI-QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NT P G VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M Sbjct: 9 NTQTRPAAHEGPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMA 68 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ + + L+ E+ + + L + +S+ L NI LA+ +S PE + Y RQ + Sbjct: 69 QDVHDYHHR--LSAPEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVY 126 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEA+H+ +Q+ I +L LD+ E++N YR VP+I K A + KD Sbjct: 127 EEAMHTWAYQHCIETLNLDQSEIYNRYRVVPAINGKIQMANRRLDAAMRSDMNLRDKDDL 186 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 QEF+ F VFEG WFY GF+ I +L R M G EQ QYI+RDE++H +FG+ V+ Sbjct: 187 QEFIMSYLFFAAVFEGAWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVV 246 Query: 243 NQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 NQI + EN L K R M E+ E AYA+ + +G +A + +F+AN Sbjct: 247 NQILEEENITLDPKAV----RDMWDESEAAETAYANYILRDPILGYSAQYHSEQFRFVAN 302 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 RR +GLE F +N PW+ E L+KEKNFFETRV EYQ GA+L+W Sbjct: 303 RRARTVGLEEPFPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352 >gi|120556760|ref|YP_961111.1| ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8] gi|120326609|gb|ABM20924.1| Ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8] Length = 352 Score = 261 bits (668), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 137/340 (40%), Positives = 193/340 (56%), Gaps = 5/340 (1%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 G VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M D+ + + Sbjct: 18 GGPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHHR 77 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 LT E+ + + L + +S+ L NI LA+ +S PE + Y RQ +EEA+H+ T+ Sbjct: 78 --LTPAEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTY 135 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 Q+ I +L LD+ E++N YR VP I K A + D Q+F+ Sbjct: 136 QHCIETLNLDQSEIYNRYRVVPEINGKIQLANRRLDAAMRSDMNLRNPDELQDFVMSYLF 195 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F VFEG WFY GF+ I +L R M G EQ QYI+RDE++H +FG+ V+NQI E Sbjct: 196 FAAVFEGCWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQILEEEKI 255 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + R M E+ E+AYA+ + +G +A + +F+ANRR +GLE Sbjct: 256 TLDP---KAVREMWDESEAAEMAYANYVLRDPILGYSAEYHSEQFRFVANRRARTVGLEE 312 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 F +N PW+ E L+KEKNFFETRV EYQ GA+L+W Sbjct: 313 PFPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352 >gi|90023100|ref|YP_528927.1| amino acid adenylation [Saccharophagus degradans 2-40] gi|89952700|gb|ABD82715.1| Class Ia ribonucleoside-diphosphate reductase beta subunit [Saccharophagus degradans 2-40] Length = 368 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 140/348 (40%), Positives = 198/348 (56%), Gaps = 6/348 (1%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 G + + V DKR++N +D+NQL P KY WAW+ +++A NHW P ++ M D Sbjct: 27 AGQAATPNAQAPVCASDKRVINGHTDINQLAPFKYPWAWDFFINANKNHWTPLDINMSQD 86 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + + K+ LT+ ER M + L + +S+ L NI LA+ ++ PE + Y RQ +EE Sbjct: 87 V--YDYKHNLTEAERHMYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEE 144 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+ T+Q+ I +LGLD+GE++N YR VP I AK A + +++ D Sbjct: 145 ALHTWTYQHCIETLGLDQGEIYNRYRVVPEINAKIQMANRRLESILRSDIDLTDPDQLNN 204 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F+ F VFEG WFY GF+ I +L R M G AEQ QYIMRDE++H FGI ++Q Sbjct: 205 FILAYIFFAAVFEGCWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDETMHCAFGIQTVSQ 264 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 I IEN T +TM EA E YA + + +G +A + +FIANRR Sbjct: 265 IIIEN---CTNIDVDAIKTMWEEADEAEANYARYILREPILGYSANDHIEQFRFIANRRA 321 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GLE F + PW+ E +++KEKNFFETRV EYQ G L+WD Sbjct: 322 RQLGLEEPFPQAKCALPWLDEQANIRKEKNFFETRVIEYQAGG-LEWD 368 >gi|126664354|ref|ZP_01735338.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17] gi|126630680|gb|EBA01294.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17] Length = 352 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 140/352 (39%), Positives = 202/352 (57%), Gaps = 14/352 (3%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A N+ ++P VNVDDKR++N +DVNQL P KY WAWE +++A NHW P +V Sbjct: 14 IALNSSVAP-------VNVDDKRVINGNTDVNQLAPFKYPWAWEYFMNANKNHWTPLDVN 66 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ + + L E+ + + L + +S+ L NI LA+ ++ PE + Y RQ Sbjct: 67 MSQDVHDYHHR--LNPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQ 124 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +EEAVH+ T+Q+ I +L LD+GE++N YR VP I K A + KD Sbjct: 125 VYEEAVHTWTYQHCIETLNLDQGEIYNRYRVVPQINGKIQMANRRLNAAMRSDINLRNKD 184 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 QEF+ F VFEG WFY GF+ I +L R M G EQ+QYI+RDE++H +FG+ Sbjct: 185 DLQEFIMSYLFFAAVFEGCWFYNGFSPIFALQRRGLMRGTGEQFQYILRDEAMHFSFGLK 244 Query: 241 VINQIKIENPHLWTKEFQQKS-RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 V+NQI +E ++ F K+ R M E+ E YA+ + +G +A + +F+ Sbjct: 245 VVNQI-LEEENI---SFDPKAVRDMWDESEAAESDYANYILRDPILGYSAEYHIEQFRFV 300 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 ANRR + L F +N PW+ E ++KEKNFFETRV EYQ GA+L+W Sbjct: 301 ANRRARTVNLPEPFPGAKNVSPWLEEQATMRKEKNFFETRVIEYQTGAQLEW 352 >gi|254492407|ref|ZP_05105579.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga thiooxidans DMS010] gi|224462299|gb|EEF78576.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga thiooxydans DMS010] Length = 383 Score = 258 bits (659), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 143/360 (39%), Positives = 199/360 (55%), Gaps = 15/360 (4%) Query: 2 ANNTGLSPIQA--------GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH 53 AN+ +P +A K +N DDKR++N +D+NQL P KY WAW +L+A NH Sbjct: 30 ANDLSEAPARAEVTEMPLNNAKAINADDKRVINGEADINQLAPFKYPWAWNYFLNANKNH 89 Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P ++ M D+ ++ K LT +ER + + L + +S+ L NI LA+ ++ PE Sbjct: 90 WTPLDINMAQDVHDYRHK--LTLEERHVYENVLSYLTTSDILAMRNIGLAVMEKMTAPEL 147 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + Y RQ +EEA+H+ T+Q+ I ++GLD+ E++N YR VP I K A T+ Sbjct: 148 QIYQARQVYEEALHTWTYQHCIETIGLDQSEIYNRYRVVPEIHQKIKLANDRLDTVMRSD 207 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 +D + F+ F +FEG WFY GF+ I +L R M G AEQ QYIMRDE + Sbjct: 208 IDLRDRDELENFVMSYAFFAGIFEGSWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVM 267 Query: 234 HLNFGIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292 H +FGI V QI K EN L K+ QQ M EA E YA + +G + Sbjct: 268 HASFGIRVCKQIMKEENITLDPKKVQQ----MFEEADAAEETYAGYILRDPILGYSKEVH 323 Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ++ ANRR Q+G E F E PW+ E +++KEKNFFET+VTEYQ G LKWD Sbjct: 324 HGQFRYTANRRAKQLGFEEPFPGAEATLPWLDEQANMRKEKNFFETKVTEYQTGGGLKWD 383 >gi|83649535|ref|YP_437970.1| ribonucleotide reductase subunit beta [Hahella chejuensis KCTC 2396] gi|83637578|gb|ABC33545.1| Ribonucleotide reductase, beta subunit [Hahella chejuensis KCTC 2396] Length = 405 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 137/336 (40%), Positives = 191/336 (56%), Gaps = 7/336 (2%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VN DDKR++N +D+NQL P KY WAWE +L+A NHW P ++ M D+ + K LT Sbjct: 76 VNPDDKRVVNGMTDINQLAPFKYPWAWEFFLNANKNHWTPLDINMSQDVYDYHHK--LTL 133 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ + + L + +S+ L NI LA+ +S PE + Y RQ +EE++H+ T+Q+ I Sbjct: 134 EEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEESLHTWTYQHCIE 193 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 ++GLD+ E++N YR P+I K + L P +D + F+ F +F Sbjct: 194 TIGLDQSEIYNRYRVTPAIYRKIKMGNERISALLRPDINLRNRDDLETFVMAYIFFAGIF 253 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ-IKIENPHLWTK 255 EG WFY GF+ I +L R M G EQ QYIMRDE +H FGI V+ Q IK E L K Sbjct: 254 EGCWFYNGFSPIFALQRRGLMKGTGEQLQYIMRDEVMHCAFGIRVVKQIIKEEGVTLDPK 313 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +T+ EA E YAH + + +G A + +FIANRR Q+ L+ F Sbjct: 314 AI----KTLWEEAEAAETGYAHFLLKEPILGYTAEDHIEQFRFIANRRAKQLKLDEPFPG 369 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 N PW+ E ++KEKNFFETRVTEYQ GA L+W Sbjct: 370 AGNALPWLDEQASMRKEKNFFETRVTEYQTGASLQW 405 >gi|254449372|ref|ZP_05062814.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium HTCC5015] gi|198261018|gb|EDY85321.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium HTCC5015] Length = 404 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 137/347 (39%), Positives = 193/347 (55%), Gaps = 5/347 (1%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 T + + G V +DK+++N +D+NQL P KY WAWE +L+A NHW P ++ M D Sbjct: 63 TNAAQMSGGVNPVKAEDKKVVNGMADINQLAPFKYPWAWEYFLNANKNHWTPLDINMAQD 122 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + + K LT +ER + L + +S+ + NI LA+ +S PE + Y RQ +EE Sbjct: 123 VHDFHHK--LTLEERHVYTNVLSYLTTSDIMAMRNIGLAVMEKMSAPELQIYQARQVYEE 180 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 ++H+ T+Q+ I +LGLD+GE++N YR VP I AK A + ++ P +D Sbjct: 181 SLHTWTYQHCIETLGLDQGEVYNRYRVVPEINAKIQIANRRLNSVMRPDIDLNDRDELHN 240 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 FL F +FEG WFY GF+ I +L R M G AEQ QYIMRDE +H +FG+ V Q Sbjct: 241 FLMSYIFFAGIFEGCWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHASFGLRVARQ 300 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 I E + + R M E E YA + +G +A +FIANRR Sbjct: 301 IMREEN---IQPDPKAMREMWDECEAAEEGYARYLLRDPILGYSAEDHVNQFRFIANRRA 357 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 +++ LE F EN PW+ E +++KEKNFFETRVTEYQ G L W Sbjct: 358 NKLSLEEPFPGAENALPWLDEQANMRKEKNFFETRVTEYQVGGGLTW 404 >gi|260220050|emb|CBA27200.1| Ribonucleoside-diphosphate reductase subunit alpha [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1306 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 112/181 (61%), Positives = 140/181 (77%) Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P+F TGT ++DQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDE Sbjct: 1126 PNFHTGTSESDQVLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDE 1185 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H NFGID+INQ+K+ENPHLWT EF+ + + + +A LE YA +TMP+G +G+NA Sbjct: 1186 SMHCNFGIDLINQLKLENPHLWTPEFKAEIKALFEKAVELEYRYAEDTMPRGVLGMNASM 1245 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 + Y+++IANRR QIGLEPLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W Sbjct: 1246 FKGYLRYIANRRATQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSW 1305 Query: 352 D 352 D Sbjct: 1306 D 1306 >gi|294055010|ref|YP_003548668.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis DSM 45221] gi|293614343|gb|ADE54498.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis DSM 45221] Length = 360 Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 124/316 (39%), Positives = 196/316 (62%), Gaps = 2/316 (0%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LPLKY WA++ Y + NNHW P ++PMQ D+ LW+S + L+D ER +IK +G+F+++E Sbjct: 39 ILPLKYQWAYDLYKTMKNNHWEPEDIPMQKDVELWRSAD-LSDAERWIIKMAIGYFSAAE 97 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +V +NI ++ PE + L R A EE +H+ + Y+I+SLG++ E M+ ++ Sbjct: 98 GIVGDNIQHVTRELVTAPELKLLLGRHAHEENIHADSLVYMISSLGINPHECEAMFEDID 157 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 +I K + + ++ L T T D Q F +++F+F EG FY F +LSL R Sbjct: 158 TIERKTAFVVNNSRGLRRDMDLTTTADK-QAFTKNMFLFGQCMEGTQFYGLFGMVLSLYR 216 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 NK GI + ++Y +RDES H+ ++I + EN +WT EF+++ R ++ EA LE Sbjct: 217 QNKFPGIGQMFRYTLRDESNHIEVFRNLIMDLIEENEDVWTPEFREELRDLMREAVTLEK 276 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + + +P VGL+A QY+ +IA+RR +GL PL +NPFPW++E++D+KKE+ Sbjct: 277 DFIRDCLPVNSVGLSADEFCQYIDYIADRRLEGVGLAPLSPGVDNPFPWLAEMMDIKKEQ 336 Query: 334 NFFETRVTEYQQGAEL 349 NFFE RVTEYQ+ + L Sbjct: 337 NFFEGRVTEYQKASAL 352 >gi|238023979|ref|YP_002908211.1| Ribonucleotide reductase subunit beta [Burkholderia glumae BGR1] gi|237878644|gb|ACR30976.1| Ribonucleotide reductase, beta subunit [Burkholderia glumae BGR1] Length = 337 Score = 245 bits (626), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 139/338 (41%), Positives = 193/338 (57%), Gaps = 7/338 (2%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K V+DKR++N D+NQL P +Y WAWE +LSA NHW P E+ M DD+ + + L Sbjct: 5 KPARVEDKRVVNGAGDINQLAPFRYAWAWECFLSANKNHWTPLEISMSDDVHDFHHR--L 62 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + + L + +S+ L NI LA+ ++ PE + Y RQ +EEA+H+ T+Q+ Sbjct: 63 SPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHC 122 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 I SLGLD+ E++N YR VP I AK + + + P +D EF F Sbjct: 123 IESLGLDQQEIYNRYRVVPQIHAKIALSNRRLNRMLEPGLDLHDRDTLHEFALAYLFFAA 182 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 VFEG WFY GF+ + +L R M A+Q+QYIMRDE LH FGI VI Q+ +E HL Sbjct: 183 VFEGTWFYNGFSPVFALQRRGLMKATAQQFQYIMRDEVLHCGFGIRVIRQL-LEEEHL-- 239 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP-SCEQYMQFIANRRCHQIGLEPLF 313 + + + EA E AYA + +G +A CEQ+ +FIANRR Q+ + F Sbjct: 240 RLDPHAVQQIWEEAEAAERAYAQYILRDPILGYSAELHCEQF-RFIANRRATQLSMPAPF 298 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 N PW+ E +L+KEKNFFETRVT+YQ G L W Sbjct: 299 PGATNALPWLDEQANLRKEKNFFETRVTDYQSGGALDW 336 >gi|254442775|ref|ZP_05056251.1| ribonucleoside-diphosphate reductase, beta subunit [Verrucomicrobiae bacterium DG1235] gi|198257083|gb|EDY81391.1| ribonucleoside-diphosphate reductase, beta subunit [Verrucomicrobiae bacterium DG1235] Length = 361 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 123/330 (37%), Positives = 196/330 (59%), Gaps = 2/330 (0%) Query: 22 KRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K+++N R + LLPLKY WA+E Y + NHW P ++ M D+ WK +++ ER Sbjct: 26 KKIINGRETMTFNLLPLKYNWAYEIYKTMKANHWEPEDIGMNKDIEQWKDTEQVSEIERW 85 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I +G+F+++E +V +NI+ I ++ PE + L R A EE VH+ + Y+I+SLG+ Sbjct: 86 IIMMGIGYFSAAEGIVGDNILHVIRELVTAPELKLVLGRHAHEENVHADSLLYMISSLGI 145 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E M+ ++P+I K + + + L + T T++ Q+F +++F+F EG Sbjct: 146 NPHECEAMFEDIPTIVKKNEFVTRQSHALRNDVDLTITENK-QKFAKNVFLFGQCMEGTQ 204 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY F ILSL R NK GI E ++Y +RDES H+ ++ + ENP +WT EF+ + Sbjct: 205 FYGMFGMILSLYRQNKFRGIGEMFRYTLRDESNHIELLRNLFMDLIEENPDVWTPEFKAE 264 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R + EA LE + + +P +GL QY+ +IA+RR GL+PL NP Sbjct: 265 LRDAMSEAIALEKEFIADCLPVDSIGLRKEDFVQYIDYIADRRLEGCGLDPLTPGVTNPL 324 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PW++E++D+KKE+NFFE RVTEYQ+ + L+ Sbjct: 325 PWLAEMMDIKKEQNFFEGRVTEYQKASSLE 354 >gi|284043177|ref|YP_003393517.1| ribonucleoside-diphosphate reductase [Conexibacter woesei DSM 14684] gi|283947398|gb|ADB50142.1| Ribonucleoside-diphosphate reductase [Conexibacter woesei DSM 14684] Length = 364 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 197/335 (58%), Gaps = 16/335 (4%) Query: 23 RMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 R++ R + LLPL+YGWA+E Y + NHW P +V M D+ W+ + L++ +R + Sbjct: 30 RVVGGRETMTFNLLPLRYGWAYELYRTMKANHWEPEDVQMAKDIEQWRDERALSEIDRWI 89 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 ++ +G+F+++E +V +NI+ + ++ E + L R A EE +H+ + Y+I+SLG+D Sbjct: 90 VRMAIGYFSAAEGIVGDNILHVVRELMTASELKLVLGRHAHEENIHADSLLYMISSLGID 149 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE-------FLQDLFVFYV 194 E M+ ++P+I AK + +Q L +D D + +++F+F Sbjct: 150 PHECEAMFDDIPTIRAKNAFVTSASQALR--------RDLDMQDPRSVALLAKNIFLFGQ 201 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG FY F +LSL R K+ GI ++Y +RDES H+ ++ ++ ENP +WT Sbjct: 202 CMEGTQFYGLFGMVLSLYRQGKLPGIGTMFRYTLRDESNHIELFRRLLRELVAENPEIWT 261 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+ + R ++ EA LE + + +P VGLNA QY+ +IA+RR +GLEPL Sbjct: 262 AEFRDELRELMREAVALEQRFIDDCLPVEGVGLNADEFAQYIDYIADRRLEGVGLEPLKP 321 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 ENP PW++E++D++KE+NFFE RVTEYQ+ + L Sbjct: 322 GVENPLPWLAELMDVRKEQNFFEGRVTEYQKASAL 356 >gi|225164890|ref|ZP_03727109.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] gi|224800504|gb|EEG18881.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] Length = 362 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 118/330 (35%), Positives = 194/330 (58%), Gaps = 3/330 (0%) Query: 22 KRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KR++N R + LLPLKY WA++ Y + NHW P ++PM D+ W+ +TD ER Sbjct: 26 KRVINGRETMTFNLLPLKYQWAYDLYRTMKANHWEPEDIPMGKDIEQWRDPRAVTDQERW 85 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I+ +G+F+++E +V +NI ++ PE + L R A EE +H+ + Y+I+SLG+ Sbjct: 86 IIRMGIGYFSAAEGIVGDNIQHVTRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E M+ ++P+I K + ++ ++ L T ++ Q +++F+F EG Sbjct: 146 NPHECEAMFEDIPTIVRKNEFVVKNSRQLRRDLDLTQPENK-QLLARNMFLFGQCMEGTQ 204 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY F ILSL R NK GI + ++Y +RDES H+ +++ + ENP +WT F+++ Sbjct: 205 FYGLFGMILSLYRQNKFPGIGQMFRYTLRDESNHIEVFRNLLMDLVEENPEIWTPGFKEE 264 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENP 319 R + EA LE + + +P VGL Y+ +IA+RR +GL P+ +NP Sbjct: 265 LRETMREAVTLEKEFIRDCLPVNAVGLAVDEFLTYIDYIADRRLEGVGLAPISATPIKNP 324 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 PW++E++D+KKE+NFFE RVTEYQ+ + L Sbjct: 325 LPWLAEMMDIKKEQNFFEGRVTEYQKASSL 354 >gi|317122809|ref|YP_004102812.1| ribonucleoside-diphosphate reductase [Thermaerobacter marianensis DSM 12885] gi|315592789|gb|ADU52085.1| Ribonucleoside-diphosphate reductase [Thermaerobacter marianensis DSM 12885] Length = 336 Score = 229 bits (583), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 120/317 (37%), Positives = 189/317 (59%), Gaps = 6/317 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 QL PL+Y WA+ N W P E+P+ DD+ W+ + LTDDER ++ LGFF Sbjct: 22 QLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWELR--LTDDERRAVELLLGFFNPM 79 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 ESLV +N+V++IY L+ PE R YL RQ +EEA H+ F+Y++ +L +D +F +R+V Sbjct: 80 ESLVTHNLVMSIYPLLTPPEVRLYLARQIWEEANHTMAFEYVLKTLPVDRERVFAAHRDV 139 Query: 153 PSITAKANWALQYT-QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 P+I AK + + T Q L P +T + Q FL++L +Y+V EG++FY GF + Sbjct: 140 PAIRAKEAFQQELTRQLLVRPDVST--LEGRQAFLRNLIGYYIVLEGVFFYGGFLFAYTF 197 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 R N + G+A ++++DESLHL+FGI +I + E+P L T EF ++ + ++ A L Sbjct: 198 RRRNLLKGLATLVDWVLKDESLHLSFGIHLITTLLEEHPELMTPEFAREVKGLILRAVEL 257 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E Y +P+ +G++A Y++++ +RR ++GL P F T NP WM+ +D+ + Sbjct: 258 ERDYNRALLPRPILGVSADYLNAYIEYVTDRRLDELGLGPHFG-TPNPAQWMATEVDVPE 316 Query: 332 EKNFFETRVTEYQQGAE 348 NFFE R Y+ A+ Sbjct: 317 IVNFFEARNIHYEVAAD 333 >gi|313903043|ref|ZP_07836438.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus DSM 13965] gi|313466767|gb|EFR62286.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus DSM 13965] Length = 336 Score = 226 bits (575), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 119/317 (37%), Positives = 187/317 (58%), Gaps = 6/317 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 QL PL+Y WA+ N W P E+P+ DD+ W+ + LTDDER ++ LGFF Sbjct: 22 QLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWELR--LTDDERRAVELLLGFFNPM 79 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 ESLV +N+V++IY L+ PE R YL RQ +EEA H+ F+Y++ +L +D +F +R V Sbjct: 80 ESLVTHNLVMSIYPLLTPPEIRLYLARQIWEEANHTMAFEYVLKTLPVDRERVFAAHRNV 139 Query: 153 PSITAKANWALQYT-QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 P+I AK + + T Q L P +T + Q FL++L +Y+V EG++FY GF + Sbjct: 140 PAIRAKEAFQQELTRQLLVRPDVST--LEGRQAFLRNLIGYYIVLEGVFFYGGFLFAYTF 197 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 R N + G+A ++++DESLHL+FGI +I + E+P L T F ++ + ++ A L Sbjct: 198 RRRNLLKGLATLVDWVLKDESLHLSFGIHLITALLEEHPELMTPAFAREVKGLILRAVEL 257 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E Y +P+ +G++A Y++++ +RR ++GL P F T NP WM+ +D+ + Sbjct: 258 ERDYNRALLPRPILGVSADYLNAYVEYVTDRRLDELGLGPHFG-TPNPAKWMATEVDVPE 316 Query: 332 EKNFFETRVTEYQQGAE 348 NFFE R Y+ A+ Sbjct: 317 IVNFFEARNIHYEVAAD 333 >gi|171913278|ref|ZP_02928748.1| ribonucleotide-diphosphate reductase subunit beta [Verrucomicrobium spinosum DSM 4136] Length = 361 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 116/329 (35%), Positives = 188/329 (57%), Gaps = 2/329 (0%) Query: 22 KRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KR++N R + LLPLKY WA++ Y NHW P ++ MQ D+ W+S + + + ER Sbjct: 26 KRVINGRQTMTFNLLPLKYQWAYDLYRVMKANHWEPEDIQMQKDVEQWRSVDQVAEVERW 85 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I +G+F+++E +V +NI + ++ PE + L R A EE +H+ + Y+I+SLG+ Sbjct: 86 IIMMGIGYFSAAEGIVGDNIQHVVRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E M+ ++P+I K + + + L T ++ + +++FVF EG Sbjct: 146 NPHECEAMFEDIPTIVKKNAFVTRSSNALRRDLDLTQIENK-RLLAKNIFVFGQCMEGTQ 204 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY F ILSL R K GI ++Y +RDES H+ ++ + ENP +WT EF+++ Sbjct: 205 FYGLFGMILSLYRQGKFPGIGTMFRYTLRDESNHIKVFRNLFMDLIDENPEIWTPEFREE 264 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA LE + + +P VGL A E Y+ FIA+RR +GL L NP Sbjct: 265 LVELMKEAVALEKEFIRDCLPVAAVGLTAGEFELYIDFIADRRLASVGLPALTPGIVNPL 324 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 PW++E+ D++KE+NFFE VT+YQ+ + L Sbjct: 325 PWLAEMQDIRKEQNFFEGTVTDYQKASSL 353 >gi|88856487|ref|ZP_01131145.1| ribonucleotide-diphosphate reductase beta subunit [marine actinobacterium PHSC20C1] gi|88814354|gb|EAR24218.1| ribonucleotide-diphosphate reductase beta subunit [marine actinobacterium PHSC20C1] Length = 332 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 111/314 (35%), Positives = 184/314 (58%), Gaps = 4/314 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY WA + Y A N W P E+ + +D+A +K +TD+ER + + +F +E Sbjct: 14 LKPIKYQWAMDLYDQAVANTWFPNEIQLGEDIADFKK---MTDEERHAVTFLMSYFNPNE 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y ++S EC YL +Q +EEA H +F+Y++ + +D +N + ++P Sbjct: 71 LLVNKALAFGVYPYVSAAECSLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHIDIP 130 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + L+Y + ++ + T + Q+F+++L + VV EG+WFY+GF LS + Sbjct: 131 SMARKEEFELKYIRRMTEQTLDINTIEGKQDFIRNLVAYNVVLEGIWFYSGFMVALSFRQ 190 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FGI++I + ENP + T+EF + R M+ +A +E Sbjct: 191 RNLLRNFGSLMDWVVRDESLHLKFGINLILTVLEENPEIQTEEFADEIRQMILDAVEMEE 250 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 AY H+ +P G +GLNA QY++++A+RR ++G EP +K T NP WM+ D + Sbjct: 251 AYNHDLLPGGILGLNANYINQYVKYLADRRLEELGFEPHYKVT-NPAKWMATANDTLELV 309 Query: 334 NFFETRVTEYQQGA 347 NFFE+ T Y+ A Sbjct: 310 NFFESTNTSYEANA 323 >gi|221633388|ref|YP_002522613.1| ribonucleotide-diphosphate reductase subunit beta [Thermomicrobium roseum DSM 5159] gi|221156578|gb|ACM05705.1| ribonucleoside-diphosphate reductase, beta subunit [Thermomicrobium roseum DSM 5159] Length = 328 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 115/315 (36%), Positives = 187/315 (59%), Gaps = 6/315 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 +L PL + WA+ A +N W P EVP+ DD+ W + L+D+ER ++ LGFF Sbjct: 15 ELFPLSHPWAYAHVQQAKHNTWFPEEVPLHDDVRDWHER--LSDEERRAVEMFLGFFNPM 72 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 ESLV N++L++YR ++ PE R YL RQA+EEA H F+Y+I +L LD +F ++ E Sbjct: 73 ESLVTTNLLLSLYRAVTAPEARLYLARQAWEEANHVMAFEYVIKTLPLDRERVFGLHVEH 132 Query: 153 PSITAKANWALQYT-QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 P++ AK + Q Q L +P + + Q +++L ++V+ EG++FY+GFA L+ Sbjct: 133 PAVAAKELFQRQLAEQWLVTPD--VESVEGLQRLVRNLVGYFVILEGIFFYSGFALALAF 190 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 + N + G+ ++++DESLHL+FGI +I I E+P + + F ++ R ++ A L Sbjct: 191 RQRNLLRGLCTIVDWVLKDESLHLSFGIHLITTILEEHPEIMSAAFGRQLRELILRAVEL 250 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E AY +P+ +GL+A +Y+++IA+RR ++GL P+ NP WM +D+ + Sbjct: 251 EEAYNRAVLPEPLIGLDADVLNRYVRYIADRRLEELGL-PIAFGEPNPLRWMVAQVDMPE 309 Query: 332 EKNFFETRVTEYQQG 346 NFFE R Y+ G Sbjct: 310 IVNFFEARNIHYEVG 324 >gi|328950373|ref|YP_004367708.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis DSM 14884] gi|328450697|gb|AEB11598.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis DSM 14884] Length = 332 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 118/328 (35%), Positives = 184/328 (56%), Gaps = 5/328 (1%) Query: 21 DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D R+ S + +L PL + WA+ +N W P EVP+ +D+ W K LT++ER Sbjct: 4 DHRLFGPPSLEAIELFPLAHPWAYAHVQQGKHNTWFPEEVPLGEDVRDWHEK--LTEEER 61 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 LGFF ESLV N+VLAI+ ++ PE R YL RQ +EEA H+ F+Y++ +L Sbjct: 62 HAASLLLGFFNPMESLVTQNLVLAIFPYVRAPEARLYLARQIWEEANHTMAFEYVLKTLP 121 Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTL-SSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 +D ++F +REVP++ AK + TQ L T+ + L++L ++VV EG Sbjct: 122 VDREKVFAAHREVPAVRAKEAFQTALTQALLQQHPLDLETRSGQEALLKNLVGYFVVLEG 181 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++FY GF LS R N + G+ + ++DESLHL+FG+ +I E + T Sbjct: 182 IFFYAGFLLALSWRRRNLLKGLGAIIDWTLKDESLHLSFGLHLITGFLEEYSEVMTPRLA 241 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ R ++ EA LE AY +P+ +GL+A + Y++++A+RR ++GLE F T N Sbjct: 242 REVRGLILEAVQLERAYNQALLPRPILGLSAETLNAYVEYVADRRLEELGLEAAFG-TPN 300 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346 P WM+ +D+ + NFFE T Y+ G Sbjct: 301 PAKWMATEVDVPEIVNFFEAVNTSYEVG 328 >gi|196233679|ref|ZP_03132520.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus Ellin428] gi|196222349|gb|EDY16878.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus Ellin428] Length = 390 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 185/342 (54%), Gaps = 3/342 (0%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + R + KR++N RS +LPLKY A+ Y NHW P + M D W Sbjct: 43 LDKAKARARLAGKRVINGLRSAELNVLPLKYHEAYRIYKQMKANHWEPDVIDMTRDSQQW 102 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L+ ER +I+ +G+F+++E +V ++++ I +L+ E + LR EE++H Sbjct: 103 NT-GALSPKERWIIEMGVGYFSAAEGIVGDSVLHVIEDNLTAAELKHASLRHIAEESIHM 161 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 + +II SL +D E+ + ++PS+ K + ++ L T T + Q+F + Sbjct: 162 DSLLHIIGSLNIDLDEVTAKFSDIPSVQRKNAFITRHMPELKMGIDLTQTANK-QKFAKA 220 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 +F V EG FY FA ILSL R NKM GI + +QY +RDES H+ G ++ Q+ E Sbjct: 221 IFGITQVMEGTQFYALFAMILSLHRQNKMTGIGQMFQYTLRDESNHIELGRYILTQLIAE 280 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT EF+ + + E LE + + +P+ VG+ Y+++ A+RR + Sbjct: 281 NPDIWTPEFRAELVEFMREGVELEKEFVRDCLPEDGVGMTQADFLTYVEYNADRRLAGLD 340 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 L L NPF W+ EVI L+KEKNFFETRVTEYQ LK Sbjct: 341 LPALSGVKTNPFAWLDEVIFLRKEKNFFETRVTEYQTSGSLK 382 >gi|148273612|ref|YP_001223173.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170782700|ref|YP_001711034.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter michiganensis subsp. sepedonicus] gi|147831542|emb|CAN02508.1| putative ribonucleoside-diphosphate reductase beta subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157270|emb|CAQ02455.1| ribonucleoside-diphosphate reductase beta subunit [Clavibacter michiganensis subsp. sepedonicus] Length = 331 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 104/314 (33%), Positives = 181/314 (57%), Gaps = 4/314 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA + Y A N W P E+ + +D+A +K +TD+ER I + +F +E Sbjct: 15 LKPVNYQWAMDLYDQAVANTWFPNEIQLGEDIADFKK---MTDEERHAITFLMSYFNPNE 71 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ PEC YL +Q +EEA H +F+Y++ + +D +N + ++P Sbjct: 72 LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHVDIP 131 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + +++ + ++ + T + ++F+++L + V+ EG+WFY+GF LS + Sbjct: 132 SMARKEEFEVKFIKRMTEQTLDITTTEGKKDFVRNLVAYNVILEGIWFYSGFMVSLSFRQ 191 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +I+RDESLHL FGI++I + ENP L T+EF + + M+ +A +E Sbjct: 192 RNLLRNFGSLMDWIVRDESLHLKFGINLILTVLEENPDLQTEEFAAEIKQMILDAVEMEE 251 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P G +GLNA QY++++A+RR ++G E +K + NP WM+ D + Sbjct: 252 QYNRDLLPNGILGLNANYINQYVKYLADRRLEELGFEAEYKVS-NPAKWMATANDTLQLV 310 Query: 334 NFFETRVTEYQQGA 347 NFFE+ T Y+ A Sbjct: 311 NFFESTNTSYESNA 324 >gi|28493649|ref|NP_787810.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma whipplei str. Twist] gi|28572842|ref|NP_789622.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma whipplei TW08/27] gi|28410975|emb|CAD67360.1| ribonucleotide-diphosphate reductase small chain [Tropheryma whipplei TW08/27] gi|28476691|gb|AAO44779.1| ribonucleotide reductase beta chain [Tropheryma whipplei str. Twist] Length = 327 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 103/314 (32%), Positives = 178/314 (56%), Gaps = 4/314 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y WA + Y A N W P E+ + +D+A +K +T +E+ + + +F +E Sbjct: 14 LKPVRYQWAMDLYEQAVANTWFPNEIQLGEDIADFKK---MTHEEKHAVTFLMSYFNPNE 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ PEC YL +Q +EEA H +F+Y++ + +D E ++ + EVP Sbjct: 71 LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREEAYSSHIEVP 130 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + ++Y + ++ + T + ++F+++L + VV EG+WFY+GF L + Sbjct: 131 SMARKEEFEVEYIRRMTEETLDITTTEGKRDFIRNLVAYNVVLEGIWFYSGFMAALYFRQ 190 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +I+RDESLHL FGI++I + ENP L T +F + R M+ +E Sbjct: 191 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPDLQTSDFADEIRGMIIAGVEMEE 250 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y H+ +P G +GLN+ QY++++A+RR ++G +P + T NP WM+ D + Sbjct: 251 EYNHDLLPNGILGLNSGYINQYVKYLADRRLEELGFDPEYNVT-NPAKWMATANDTFELV 309 Query: 334 NFFETRVTEYQQGA 347 NFFE T Y+ A Sbjct: 310 NFFEAINTSYESNA 323 >gi|50955339|ref|YP_062627.1| ribonucleotide-diphosphate reductase subunit beta [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951821|gb|AAT89522.1| ribonucleoside-diphosphate reductase, beta chain [Leifsonia xyli subsp. xyli str. CTCB07] Length = 329 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 103/315 (32%), Positives = 182/315 (57%), Gaps = 4/315 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY WA + Y A N W P E+ + +D+A +K +TD+ER + + +F +E Sbjct: 14 LKPVKYQWAMDLYDQAVANTWFPNEIQIGEDIADFKK---MTDEERHAVTFLMSYFNPNE 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ E YL +Q +EEA H +F+Y++ + +D + +N + +VP Sbjct: 71 LLVNKALAFGVYPYINAAEAHLYLAKQMWEEANHCMSFEYVLETFPIDREQAYNSHVDVP 130 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ +K + +++ + ++ + T + Q+F+++L + V+ EG+WFY+GF LS + Sbjct: 131 SMASKEEFEVRFIKRMTEQALDITTTEGKQDFIRNLIAYNVILEGIWFYSGFMVALSFRQ 190 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FGI++I + ENP L T EF + + M+ +A +E Sbjct: 191 RNLLRNFGSLIDWVVRDESLHLKFGINLILTVLEENPDLQTPEFAAEIKQMILDAVEMEE 250 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P G +GLNA QY++++A+RR ++G E +K + NP WM+ D + Sbjct: 251 QYNRDLLPGGILGLNANYINQYVKYLADRRLEELGFEAEYKVS-NPAKWMATANDTLELV 309 Query: 334 NFFETRVTEYQQGAE 348 NFFE+ T Y+ A+ Sbjct: 310 NFFESTNTSYESNAK 324 >gi|311743885|ref|ZP_07717691.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium marinum DSM 15272] gi|311313015|gb|EFQ82926.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium marinum DSM 15272] Length = 357 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 105/316 (33%), Positives = 179/316 (56%), Gaps = 4/316 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA E Y A N W P E+ + +DLA ++ ++D+ER + + +F +E Sbjct: 45 LKPVTYPWAMELYDQAVANTWFPNEIQLGEDLADFER---MSDEERHALTFLMSYFNPNE 101 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H +F+Y++ + +D + + VP Sbjct: 102 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYGSHVTVP 161 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ AK + +++ + ++ + T + Q+F+++L + V+ EG+WFY+GF LS + Sbjct: 162 SMAAKEEFEIRFIRRMTEQTLDITTTEGKQDFVRNLVAYNVILEGIWFYSGFMVALSFRQ 221 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +I+RDESLHL FGI++I + ENP + T EF + + M+ +A +E Sbjct: 222 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPEVATAEFAAEIQQMVLDAVEMEE 281 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 AY + +P G +GLNA QY++++A+RR ++G P + T NP WM+ D + Sbjct: 282 AYNRDLLPGGILGLNADYINQYVRYLADRRLEELGFGPHYGAT-NPAKWMATANDTLQLV 340 Query: 334 NFFETRVTEYQQGAEL 349 NFFE T Y+ A+L Sbjct: 341 NFFEATNTSYEVNAKL 356 >gi|117928932|ref|YP_873483.1| ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus 11B] gi|117649395|gb|ABK53497.1| Ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus 11B] Length = 348 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 112/324 (34%), Positives = 184/324 (56%), Gaps = 11/324 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E++ +A N W EV + DLA + L+ E ++KR + FFA+ + Sbjct: 28 LRPMRYPHFFERFKAAIRNTWTVEEVDLHSDLADLRK---LSPAEHHLVKRLVAFFATGD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR 150 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F Sbjct: 85 TIVANNLVLNLYQHINSPEARLYLSRQLFEEAVHVQFYLALLDTYITDERERAEAFAAIE 144 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA++ ++ ++ D + FL +L F EG++FY FA + Sbjct: 145 NIPSIKRKADFCFRWIDSIFDLRELRTAADR-RSFLLNLICFAACIEGLFFYGAFAYVYF 203 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F DVI+ ++ E P L+ E +++R ML EA Sbjct: 204 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVIDTVRREEPELFDDELARQAREMLAEAVD 263 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E +A + + +G G++ Y++ +A+RRC Q+GLEP++ + NPF +M E+ D++ Sbjct: 264 CETQFAEDLLGQGVPGMSLADMRSYLEHVADRRCVQLGLEPIYG-SPNPFTFM-ELQDVQ 321 Query: 331 KEKNFFETRVTEYQQG--AELKWD 352 + NFFE RV YQ G E+ +D Sbjct: 322 ELSNFFERRVAAYQIGVSGEVAFD 345 >gi|238061574|ref|ZP_04606283.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC 39149] gi|237883385|gb|EEP72213.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC 39149] Length = 344 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 109/317 (34%), Positives = 179/317 (56%), Gaps = 9/317 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++++ A N W EV + DLA L+ ER ++ R + FFA+ + Sbjct: 24 LRPMRYPHFFDRFKDAIKNTWTVEEVDLHSDLA---DLARLSPAERHLVSRLVAFFATGD 80 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---R 150 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F + Sbjct: 81 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDERERFAAFAAIE 140 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ T++ + FL +L F EG++FY FA + Sbjct: 141 NIPSIRRKAEFCFRWIDSIFELR-ELKTREDRRAFLLNLICFAACIEGLFFYGAFAYVYF 199 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F DV++ ++ E P L+ E ++ R ML EA Sbjct: 200 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTVRHEEPDLFDDELARQVREMLAEAVE 259 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E +A + + +G GL+ QY+Q +A+RR Q+G+ PL+ + NPF +M E+ D++ Sbjct: 260 CEAQFAEDLLEQGVSGLSLDDMRQYLQHVADRRLAQLGIAPLYG-SANPFAFM-ELQDVQ 317 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV+ YQ G Sbjct: 318 ELSNFFERRVSAYQVGV 334 >gi|312962626|ref|ZP_07777115.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas fluorescens WH6] gi|311283001|gb|EFQ61593.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas fluorescens WH6] Length = 136 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 88/136 (64%), Positives = 108/136 (79%) Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 M G+AEQ+QYI+RDES+HLNFGIDVINQIKIENPHLW E ++++ M+ + T LEI YA Sbjct: 1 MTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYA 60 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336 +TMP+G +G+NA E Y++FIANRR QIGL+ + T NPFPWMSE++DLKKEKNFF Sbjct: 61 RDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFF 120 Query: 337 ETRVTEYQQGAELKWD 352 ETRV EYQ G L WD Sbjct: 121 ETRVIEYQTGGALSWD 136 >gi|50843560|ref|YP_056787.1| ribonucleotide-diphosphate reductase subunit beta [Propionibacterium acnes KPA171202] gi|282854887|ref|ZP_06264221.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J139] gi|289427904|ref|ZP_06429608.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J165] gi|295131638|ref|YP_003582301.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK137] gi|50841162|gb|AAT83829.1| ribonucleoside-diphosphate reductase beta chain [Propionibacterium acnes KPA171202] gi|282582033|gb|EFB87416.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J139] gi|289158787|gb|EFD06987.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J165] gi|291376691|gb|ADE00546.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK137] gi|313771782|gb|EFS37748.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL074PA1] gi|313808408|gb|EFS46875.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL087PA2] gi|313810605|gb|EFS48319.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL083PA1] gi|313813765|gb|EFS51479.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL025PA1] gi|313818171|gb|EFS55885.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL046PA2] gi|313821029|gb|EFS58743.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL036PA1] gi|313823899|gb|EFS61613.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL036PA2] gi|313827161|gb|EFS64875.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL063PA1] gi|313831646|gb|EFS69360.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL007PA1] gi|313834800|gb|EFS72514.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL056PA1] gi|314924366|gb|EFS88197.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL001PA1] gi|314927054|gb|EFS90885.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL036PA3] gi|314961874|gb|EFT05975.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL002PA2] gi|314965892|gb|EFT09991.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL082PA2] gi|314974996|gb|EFT19091.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL053PA1] gi|314977908|gb|EFT22002.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL045PA1] gi|314979603|gb|EFT23697.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL072PA2] gi|314981613|gb|EFT25706.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA3] gi|314984684|gb|EFT28776.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA1] gi|314988338|gb|EFT32429.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA2] gi|314990428|gb|EFT34519.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA3] gi|315082361|gb|EFT54337.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL078PA1] gi|315083809|gb|EFT55785.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL027PA2] gi|315087306|gb|EFT59282.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL002PA3] gi|315089724|gb|EFT61700.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL072PA1] gi|315092253|gb|EFT64229.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA4] gi|315094826|gb|EFT66802.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL060PA1] gi|315095599|gb|EFT67575.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL038PA1] gi|315104692|gb|EFT76668.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL050PA2] gi|315107754|gb|EFT79730.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL030PA1] gi|327326613|gb|EGE68401.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL096PA3] gi|327332877|gb|EGE74609.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL096PA2] gi|327335278|gb|EGE76988.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL097PA1] gi|327447704|gb|EGE94358.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL043PA2] gi|327448579|gb|EGE95233.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL043PA1] gi|327449568|gb|EGE96222.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL013PA2] gi|328757395|gb|EGF71011.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL020PA1] gi|328762002|gb|EGF75508.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL099PA1] gi|332676502|gb|AEE73318.1| ribonucleoside-diphosphate reductase subunit beta [Propionibacterium acnes 266] Length = 328 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 96/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + + + + ++ + T + Q+F+++L + ++ EG+WFY+GF LS + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P+G +G+NA Y++++A+RR ++G EP ++ NP WM+ D + Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVV-NPAKWMATANDTLQVV 308 Query: 334 NFFETRVTEYQQGA 347 NFFE T Y+ A Sbjct: 309 NFFEATNTSYEVNA 322 >gi|327328671|gb|EGE70431.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL103PA1] Length = 328 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 96/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + + + + ++ + T + Q+F+++L + ++ EG+WFY+GF LS + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P+G +G+NA Y++++A+RR ++G EP ++ NP WM+ D + Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRIV-NPAKWMATANDTLQVV 308 Query: 334 NFFETRVTEYQQGA 347 NFFE T Y+ A Sbjct: 309 NFFEATNTSYEVNA 322 >gi|289425969|ref|ZP_06427716.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK187] gi|289153512|gb|EFD02226.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK187] gi|313763766|gb|EFS35130.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL013PA1] gi|313802998|gb|EFS44206.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA2] gi|313816916|gb|EFS54630.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL059PA1] gi|313829718|gb|EFS67432.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL063PA2] gi|313839374|gb|EFS77088.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL086PA1] gi|314916474|gb|EFS80305.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA4] gi|314932316|gb|EFS96147.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL067PA1] gi|314956590|gb|EFT00842.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL027PA1] gi|314959472|gb|EFT03574.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL002PA1] gi|314964864|gb|EFT08964.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL082PA1] gi|314968630|gb|EFT12728.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL037PA1] gi|315079174|gb|EFT51177.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL053PA2] gi|315100241|gb|EFT72217.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL059PA2] gi|315102565|gb|EFT74541.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL046PA1] gi|315109517|gb|EFT81493.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL030PA2] gi|327455890|gb|EGF02545.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL087PA3] gi|327458042|gb|EGF04697.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL083PA2] gi|328757204|gb|EGF70820.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL087PA1] gi|328757585|gb|EGF71201.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL025PA2] Length = 328 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 96/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + + + + ++ + T + Q+F+++L + ++ EG+WFY+GF LS + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P+G +G+NA Y++++A+RR ++G EP ++ NP WM+ D + Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYR-VANPAKWMATANDTLQVV 308 Query: 334 NFFETRVTEYQQGA 347 NFFE T Y+ A Sbjct: 309 NFFEATNTSYEVNA 322 >gi|313793687|gb|EFS41718.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA1] gi|327456018|gb|EGF02673.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL092PA1] Length = 328 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 96/314 (30%), Positives = 170/314 (54%), Gaps = 4/314 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + + + + ++ + T + Q+F+++L + ++ EG+WFY+GF LS + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P+G G+NA Y++++A+RR ++G EP ++ NP WM+ D + Sbjct: 250 QYNRDMLPRGIRGMNADYVNDYVKYLADRRLEELGFEPEYR-VANPAKWMATANDTLQVV 308 Query: 334 NFFETRVTEYQQGA 347 NFFE T Y+ A Sbjct: 309 NFFEATNTSYEVNA 322 >gi|314918862|gb|EFS82693.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL050PA1] gi|314921071|gb|EFS84902.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL050PA3] Length = 328 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 95/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + + + + ++ + T + ++F+++L + ++ EG+WFY+GF LS + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTRDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P+G +G+NA Y++++A+RR ++G EP ++ NP WM+ D + Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYR-VANPAKWMATANDTLQVV 308 Query: 334 NFFETRVTEYQQGA 347 NFFE T Y+ A Sbjct: 309 NFFEATNTSYEVNA 322 >gi|256391238|ref|YP_003112802.1| ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM 44928] gi|256357464|gb|ACU70961.1| Ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM 44928] Length = 331 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 110/324 (33%), Positives = 179/324 (55%), Gaps = 11/324 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +++Y A N W EV + DL + L+ ER ++ R + FFA+ + Sbjct: 11 LRPMRYPHFFDRYRDAIKNTWTVEEVDLHSDLT---DLDRLSAAERHLVSRLVAFFATGD 67 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F Sbjct: 68 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEDERTEAFAAVE 127 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ +L + +D + FL +L F EG++FY FA + Sbjct: 128 NIPSIRRKAEFCFRWIDSLGNLQRLESREDR-RAFLLNLICFAACIEGLFFYGAFAYVYF 186 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F DV++ ++ E P L+ ++ Q+ R ML EA Sbjct: 187 LRSRGLLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDEKMAQQVREMLAEAVE 246 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E +A + + G GL Y++ +A+RR Q+GLEP++ T NP +M E+ D++ Sbjct: 247 CETQFAGDLLGGGVSGLPVADMRAYLEHVADRRLEQLGLEPMYG-TANPLGFM-ELQDVQ 304 Query: 331 KEKNFFETRVTEYQ--QGAELKWD 352 + NFFE RV+ YQ G + +D Sbjct: 305 ELSNFFERRVSAYQVAVGGSVSFD 328 >gi|330467634|ref|YP_004405377.1| ribonucleoside-diphosphate reductase [Verrucosispora maris AB-18-032] gi|328810605|gb|AEB44777.1| Ribonucleoside-diphosphate reductase [Verrucosispora maris AB-18-032] Length = 342 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 107/316 (33%), Positives = 177/316 (56%), Gaps = 9/316 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++++ A N W EV + DLA L+ E+ ++ R + FFA+ + Sbjct: 22 LRPMRYPQFFDRFKDAIRNTWTVEEVDLHADLA---DLAKLSPAEQHLVSRLVAFFATGD 78 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYR 150 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F Sbjct: 79 TIVANNLVLNLYQHINSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKQRYEAFAAVE 138 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ T+ + FL +L F EG++FY FA + Sbjct: 139 NIPSIARKAEFCFKWIDSIFELR-ELKTRADRRAFLLNLICFAACIEGLFFYGAFAYVYF 197 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F DV++ ++ E P L+ E +Q+ R ML EA Sbjct: 198 LRSRGVLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDAEMEQQVRDMLAEAVD 257 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + + +G G+ QY+Q +A+RR +G+ P++ T NPF +M E+ D++ Sbjct: 258 CEVQFAADLLEQGVSGMPLADMRQYLQHVADRRLAMLGIAPMYGST-NPFAFM-ELQDVQ 315 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE RV+ YQ G Sbjct: 316 ELSNFFERRVSAYQVG 331 >gi|256825983|ref|YP_003149943.1| ribonucleotide reductase subunit beta [Kytococcus sedentarius DSM 20547] gi|256689376|gb|ACV07178.1| ribonucleotide reductase, beta subunit [Kytococcus sedentarius DSM 20547] Length = 365 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/318 (33%), Positives = 175/318 (55%), Gaps = 8/318 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E + A N W E+ + DLA N L+ ER ++ R + FFA+ + Sbjct: 44 LRPMRYPQFYEMFRDAIKNTWTVEEIDLHSDLA--DLHNKLSPAERHLVSRLVAFFATGD 101 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152 ++VANN+VL +Y H+++PE R YL RQ FEEAVH + ++ + DE E F + V Sbjct: 102 TIVANNLVLNLYEHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYVPDEAERFEAFAAVE 161 Query: 153 --PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 PSI KA + + ++ + TK+ ++FL +L F EG++FY FA + Sbjct: 162 NIPSIRTKAEFCFTWIDSIENLG-QLETKEQRRQFLLNLICFGTCIEGLFFYGAFAYVYF 220 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F +V+ ++ E P L+ E + R ML EA Sbjct: 221 LRSRGLLNGLASGTNWVFRDESMHMAFAFEVVETVRSEEPDLFDAEMAGQVRQMLMEAVD 280 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E +A + + G GL+ Y++ +A+RR Q+G+ ++ T+NP +M E+ D++ Sbjct: 281 AEAQFAEDLLGMGVAGLSVADMRAYLENVADRRAVQLGMPEIYG-TKNPLAFM-ELQDVQ 338 Query: 331 KEKNFFETRVTEYQQGAE 348 + NFFE RV+ YQ G E Sbjct: 339 ELSNFFERRVSAYQVGVE 356 >gi|313836278|gb|EFS73992.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL037PA2] gi|314928743|gb|EFS92574.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL044PA1] gi|314971220|gb|EFT15318.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL037PA3] gi|328906508|gb|EGG26283.1| ribonucleotide-diphosphate reductase subunit beta [Propionibacterium sp. P08] Length = 324 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 99/314 (31%), Positives = 173/314 (55%), Gaps = 8/314 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P EV + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYPWAYDLYNQAVANTWFPNEVQLDEDLADFAR---MTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + +++ + ++ + T + Q+F+++L + ++ EG+WFY+GF LS + Sbjct: 130 SMARKEAFEVEFIKRVTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPDIATDEFAVEIHDMILKGVEMEA 249 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P+G G+NA Y++++A+RR ++GLEP + + NP WM+ D + Sbjct: 250 QYNRDMLPRGIPGMNA----DYVKYLADRRLEELGLEPEY-HVANPAKWMATANDTLQLV 304 Query: 334 NFFETRVTEYQQGA 347 NFFET T Y+ A Sbjct: 305 NFFETTNTSYEVNA 318 >gi|302867100|ref|YP_003835737.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029] gi|315506490|ref|YP_004085377.1| ribonucleotide reductase [Micromonospora sp. L5] gi|302569959|gb|ADL46161.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029] gi|315413109|gb|ADU11226.1| ribonucleotide reductase [Micromonospora sp. L5] Length = 342 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 105/316 (33%), Positives = 179/316 (56%), Gaps = 9/316 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++++ A N W EV + DLA L+ ER ++ R + FFA+ + Sbjct: 22 LRPMRYPRFFDRFKDAIKNTWTVEEVDLHSDLA---DLAKLSPAERHLVSRLVAFFATGD 78 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F + V Sbjct: 79 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKERFAAFDAVE 138 Query: 153 --PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 PSI KA + ++ ++ T+ + FL +L F EG++FY FA + Sbjct: 139 NIPSIARKAEFCFRWIDSIFELR-ELRTRADRRAFLLNLICFAACIEGLFFYGAFAYVYF 197 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F DV+ ++ E P L+ E +++ + ML EA Sbjct: 198 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVVETVRAEEPDLFDDEMERQVKEMLAEAVE 257 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+++A + + +G G++ +Y+Q +A+RR +G+ P++ + NPF +M E+ D++ Sbjct: 258 CEVSFAEDLLGQGVPGMSLADMREYLQHVADRRLAVLGIAPMYG-SGNPFAFM-ELQDVQ 315 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE RV+ YQ G Sbjct: 316 ELSNFFERRVSAYQVG 331 >gi|297157411|gb|ADI07123.1| ribonucleoside-diphosphate reductase [Streptomyces bingchenggensis BCW-1] Length = 340 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 108/321 (33%), Positives = 176/321 (54%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +++Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 20 LRPMRYPDFYDRYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHLIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + ++ ++ TKD + FL +L F EG++FY FA Sbjct: 134 AVENIPSIREKAEFCFRWIDSVDKID-RLETKDERRRFLLNLICFAACIEGLFFYGAFAY 192 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H+NF V++ ++ E P L+ E QQ+ ML E Sbjct: 193 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFQVVDTVREEEPELFDDELQQQVTDMLRE 252 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +A + +G G+N S QY++ +A++R ++G P++ +ENPF +M E+ Sbjct: 253 AVEAELQFARDLCGEGLPGMNTESMRQYLECVADQRLARLGFAPVYG-SENPFSFM-ELQ 310 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 ++++ NFFE R + YQ E Sbjct: 311 NVQELTNFFERRASAYQVAVE 331 >gi|269302771|gb|ACZ32871.1| ribonucleoside-diphosphate reductase beta subunit, truncated [Chlamydophila pneumoniae LPCoLN] Length = 159 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 92/142 (64%), Positives = 114/142 (80%), Gaps = 2/142 (1%) Query: 15 KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV V K ++N + DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LWKS + Sbjct: 11 KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 69 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 129 Query: 134 IITSLGLDEGELFNMYREVPSI 155 I SLGLDEGE+FN Y E SI Sbjct: 130 ICESLGLDEGEVFNAYNERASI 151 >gi|159040364|ref|YP_001539617.1| ribonucleoside-diphosphate reductase [Salinispora arenicola CNS-205] gi|157919199|gb|ABW00627.1| Ribonucleoside-diphosphate reductase [Salinispora arenicola CNS-205] Length = 350 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 110/348 (31%), Positives = 189/348 (54%), Gaps = 16/348 (4%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A ++ GE+ + +D L R P++Y ++++ A N W EV + Sbjct: 5 AETRTVTAATTGERHMLLDPGMDLTLR-------PMRYPHFFDRFKEAIKNTWTVEEVDL 57 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DLA L+ ER ++ R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ Sbjct: 58 HSDLA---DLAKLSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQL 114 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREV---PSITAKANWALQYTQTLSSPSFTTGT 178 FEEAVH + ++ + DE E F + V PSI KA + ++ ++ T Sbjct: 115 FEEAVHVQFYLNLLDTYVPDEKERFAAFAAVENIPSIARKAEFCFRWIDSIFELR-ELRT 173 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + + FL +L F EG++FY FA + L + G+A ++ RDES+H+ F Sbjct: 174 RADRRAFLLNLICFAACIEGLFFYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFA 233 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 DV++ I+ E P L+ + +++ + M+ EA E +A + + +G GL+ +Y+Q Sbjct: 234 FDVVDTIRAEEPDLFDADLERQIKDMVTEAVDCEAQFAEDLLEQGVSGLSLADMREYLQH 293 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 +A+RR +G+ P++ ++NPF +M E+ D+++ NFFE RV+ YQ G Sbjct: 294 VADRRLVTLGIAPIYG-SQNPFAFM-ELQDVQELSNFFERRVSAYQVG 339 >gi|222834323|gb|EEE72800.1| predicted protein [Populus trichocarpa] Length = 146 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 81/118 (68%), Positives = 99/118 (83%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 26 KRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPNGL 85 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 T+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +Q Sbjct: 86 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 143 >gi|42523460|ref|NP_968840.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio bacteriovorus HD100] gi|39575666|emb|CAE79833.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio bacteriovorus HD100] Length = 336 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 104/317 (32%), Positives = 177/317 (55%), Gaps = 8/317 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY +E Y + N W EV DL SK +T+ E+ +I+R + FFA+ + Sbjct: 15 LRPMKYPIFYEMYKNGIKNTWTVDEVDFSTDLVDLHSK--MTESEKHLIRRLVAFFATGD 72 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDE-GELFNMYR 150 S+V NN+VL +Y+H+++PE R YL RQ +EEA+H + ++ + DE E F Sbjct: 73 SIVGNNLVLNLYKHVNSPEGRMYLSRQLYEEALHVQFYLTLLDNYIPNPDERAEAFAAVE 132 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA++ ++ +++ + +D + FL +L F EG++FY FA + Sbjct: 133 NIPSIKKKADFCYKWIDSINELTELNTIEDR-RRFLMNLICFATCVEGLFFYAAFAYVYF 191 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F I+V+ + E P L+ ++ + ML +A Sbjct: 192 LRSKGLLAGLASGTNWVFRDESMHMAFAIEVVKTARKEEPELFNQQMEDMVVQMLEDAIE 251 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +AH+ + G GL+A QY+++ A++R + + P + +NPF +M E+ D++ Sbjct: 252 CEMEFAHDVLNLGVAGLSAKDMRQYLEYCADQRLESLNIAPRYN-VKNPFIFM-ELQDMQ 309 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV+ YQ G Sbjct: 310 ELANFFERRVSAYQTGV 326 >gi|145596896|ref|YP_001161193.1| ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440] gi|145306233|gb|ABP56815.1| Ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440] Length = 350 Score = 189 bits (480), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 102/316 (32%), Positives = 178/316 (56%), Gaps = 9/316 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++++ A N W EV + DL L+ ER ++ R + FFA+ + Sbjct: 30 LRPMRYPHFFDRFKEAIKNTWTVEEVDLHSDLG---DLAKLSSAERHLVSRLVAFFATGD 86 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + +E E F + V Sbjct: 87 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPEEKERFAAFAAVE 146 Query: 153 --PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 PSI KA + ++ ++ T+ + FL +L F EG++FY FA + Sbjct: 147 NIPSIARKAEFCFRWIDSIFELR-ELRTQADRRAFLLNLICFAACIEGLFFYGAFAYVYF 205 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F DV++ ++ E P L+ + +++ + M+ EA Sbjct: 206 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDADLERQVKEMVAEAVD 265 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + + +G GL+ +Y+Q +A+RR +G+ P++ + NPF +M E+ D++ Sbjct: 266 CEVQFAEDLLEQGVSGLSLADMREYLQHVADRRLVTLGIAPMYG-SANPFAFM-ELQDVQ 323 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE RV+ YQ G Sbjct: 324 ELSNFFERRVSAYQMG 339 >gi|239944172|ref|ZP_04696109.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces roseosporus NRRL 15998] gi|239990628|ref|ZP_04711292.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces roseosporus NRRL 11379] gi|291447643|ref|ZP_06587033.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces roseosporus NRRL 15998] gi|291350590|gb|EFE77494.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces roseosporus NRRL 15998] Length = 338 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 111/337 (32%), Positives = 182/337 (54%), Gaps = 16/337 (4%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +DK +L+ ++ L P++Y +E+Y A N W EV + D+A L+ Sbjct: 3 TTEDKNLLDPGFELT-LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPG 58 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T Sbjct: 59 EQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTL 115 Query: 138 LGL------DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 L D F+ E+PSI KA + ++ ++ TK + FL +L Sbjct: 116 LDTYLPDPDDRAAAFDAVEEIPSIREKAQFCFKWMDSVEKIE-RLETKADRRRFLLNLIC 174 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F EG++FY FA + + G+A ++ RDE++H+NF +V++ ++ E P Sbjct: 175 FAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPD 234 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L+ E QQ+ ML EA E+ + + +G G+N S QY++ +A++R ++G P Sbjct: 235 LFDDELQQQVTDMLKEAVEAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGF-P 293 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 +ENPF +M E+ +++ NFFE R + YQ E Sbjct: 294 TVYGSENPFSFM-ELQGVQELTNFFERRPSAYQVAVE 329 >gi|329939692|ref|ZP_08288993.1| ribonucleotide-diphosphate reductase small chain [Streptomyces griseoaurantiacus M045] gi|329301262|gb|EGG45157.1| ribonucleotide-diphosphate reductase small chain [Streptomyces griseoaurantiacus M045] Length = 347 Score = 188 bits (478), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 108/321 (33%), Positives = 174/321 (54%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A LT ER +I R + FFA+ + Sbjct: 27 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLTPAERHLIGRLVAFFATGD 83 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 84 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 140 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + ++ ++ T+ + FL +L F EG++FY FA Sbjct: 141 AVENIPSIREKAEFCFRWMDSVERLD-RLETRSDRRRFLLNLICFAACIEGLFFYGAFAY 199 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H++F DV++ ++ E P L+ +E ++ ML E Sbjct: 200 VYWFRGRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPGLFDEELGRQVTDMLRE 259 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +A + G G+N S QY+Q +A++R ++G P++ +ENPF +M E+ Sbjct: 260 AVEAELQFARDLCGDGLPGMNTESMRQYLQCVADQRLVRLGFAPVYG-SENPFSFM-ELQ 317 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 318 GVQELTNFFERRASAYQVAVE 338 >gi|311898297|dbj|BAJ30705.1| putative ribonucleoside-diphosphate reductase subunit beta [Kitasatospora setae KM-6054] Length = 339 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 110/335 (32%), Positives = 182/335 (54%), Gaps = 15/335 (4%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D K+ML L P++Y +++Y A N W EV + D+A L++ ER Sbjct: 5 DRKKMLLDPGFELTLRPMRYPSFYDRYRDAIKNTWTVEEVDLHSDVA---DLAKLSEGER 61 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 MI R + FFA+ +S+V+NN+VL++Y+H+++PE R YL RQ FEEAVH Q+ +T L Sbjct: 62 HMIGRLVAFFATGDSIVSNNVVLSLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLD 118 Query: 140 L------DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 D F +PSI KA + +Y + + +K+ + FL +L F Sbjct: 119 TYLPDPEDRNAAFAAVENIPSIAQKAQFCFKYMNAVDHID-SLRSKEDRRAFLLNLICFA 177 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++FY FA + + G+A ++ RDES+H++F V++ ++ E P L+ Sbjct: 178 ACVEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDESMHMDFAFSVVDTVREEEPDLF 237 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + ++ ML EA E+ +A + +G G+N S +Y+Q +A++R ++GL P+ Sbjct: 238 DDKMARQVTEMLEEAVEAELQFARDLCGEGLPGMNTESMREYLQAVADQRLARLGL-PIR 296 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 + NPF +M E+ ++++ NFFE RV+ YQ E Sbjct: 297 YGSTNPFGFM-ELQNVQELTNFFERRVSAYQIAVE 330 >gi|328884923|emb|CCA58162.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit [Streptomyces venezuelae ATCC 10712] Length = 338 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 110/339 (32%), Positives = 180/339 (53%), Gaps = 16/339 (4%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D+K +L+ ++ L P++Y +E+Y A N W EV + D+A LT E+ Sbjct: 5 DEKNLLDPGFELT-LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLTPGEQ 60 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L Sbjct: 61 HMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLD 117 Query: 140 L------DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 D F +PSI KA + ++ ++ D + FL +L F Sbjct: 118 TYLPDPEDRAAAFAAVENIPSIREKAQFCFRWMDSVEKIDRLETQADR-RRFLLNLICFA 176 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++FY FA + + G+A ++ RDE++H+NF +V++ ++ E P L+ Sbjct: 177 ACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELF 236 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +Q+ ML EA E+ + + G G+N S +Y+Q +A++R ++G P++ Sbjct: 237 DDALRQQVTDMLKEAVEAELQFGRDLCGDGLPGMNTESMREYLQCVADQRLQRLGFAPVY 296 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +ENPF +M E+ +++ NFFE R + YQ E D Sbjct: 297 G-SENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGSVD 333 >gi|29829569|ref|NP_824203.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces avermitilis MA-4680] gi|29606677|dbj|BAC70738.1| putative ribonucleoside-diphosphate reductase beta chain [Streptomyces avermitilis MA-4680] Length = 338 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 107/321 (33%), Positives = 172/321 (53%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A LT E+ +I R + FFA+ + Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLTPAEQHLIGRLVAFFATGD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 75 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRTAAFA 131 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + ++ + TK + FL +L F EG++FY FA Sbjct: 132 AVENIPSIREKAEFCFKWINEVEKLD-RLETKADRRRFLLNLICFAACIEGLFFYGAFAY 190 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H++F +V++ ++ E P L+ E QQ+ ML E Sbjct: 191 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDDELQQQVTDMLRE 250 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ + + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ Sbjct: 251 AVEAELQFGRDLCGDGLPGMNTESMRQYLECVADQRLQRLGFAPVYG-SENPFSFM-ELQ 308 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 309 GVQELTNFFERRASAYQVAVE 329 >gi|320008647|gb|ADW03497.1| Ribonucleoside-diphosphate reductase [Streptomyces flavogriseus ATCC 33331] Length = 338 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 107/321 (33%), Positives = 174/321 (54%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F+ Sbjct: 75 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRAAAFD 131 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E+PSI KA + ++ ++ TK + FL +L F EG++FY FA Sbjct: 132 AVEEIPSIREKAQFCFRWMDSVEKIE-RLETKADRRRFLLNLICFAACIEGLFFYGAFAY 190 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H+NF +V++ ++ E P L+ E +Q+ ML E Sbjct: 191 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDELRQQVTDMLKE 250 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ + + G G+N S QY++ +A++R ++G L+ +ENPF +M E+ Sbjct: 251 AVEAELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFPALYG-SENPFSFM-ELQ 308 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 309 GVQELTNFFERRPSAYQVAVE 329 >gi|297192180|ref|ZP_06909578.1| ribonucleoside-diphosphate reductase subunit beta protein [Streptomyces pristinaespiralis ATCC 25486] gi|197720175|gb|EDY64083.1| ribonucleoside-diphosphate reductase subunit beta protein [Streptomyces pristinaespiralis ATCC 25486] Length = 340 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 106/321 (33%), Positives = 176/321 (54%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRTAAFA 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA++ ++ ++ S T+ + FL +L F EG++FY FA Sbjct: 134 AVENIPSIREKASFCFKWMDSVESID-RLETQADRRRFLLNLICFAACIEGLFFYGAFAY 192 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H+NF +V++ ++ E P L+ E +Q+ ML E Sbjct: 193 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDELRQQVTDMLKE 252 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ + + +G G+N S +Y+Q +A++R ++G P++ ++NPF +M E+ Sbjct: 253 AVEAELQFGRDLCGEGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SQNPFSFM-ELQ 310 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 311 GVQELTNFFERRPSAYQVAVE 331 >gi|239982206|ref|ZP_04704730.1| ribonucleotide-diphosphate reductase small chain [Streptomyces albus J1074] gi|291454052|ref|ZP_06593442.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces albus J1074] gi|291357001|gb|EFE83903.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces albus J1074] Length = 350 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 104/321 (32%), Positives = 176/321 (54%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 30 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHLIGRLVAFFATGD 86 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D + F Sbjct: 87 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPADRADAFA 143 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + ++ ++ D ++FL +L F EG++FY FA Sbjct: 144 AVENIPSIREKAEFCFRWMDSVDKLDQLESQADR-RKFLLNLICFAACIEGLFFYGAFAY 202 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H++F DV++ ++ E P L+ + Q++ ML E Sbjct: 203 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLQEQVVAMLKE 262 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +A + G G+N S +Y++ +A++R ++G P++ ++NPF +M E+ Sbjct: 263 AVEAELQFARDLCGDGLPGMNTESMREYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQ 320 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE RV+ YQ E Sbjct: 321 GVQELTNFFERRVSAYQVAVE 341 >gi|282861024|ref|ZP_06270089.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE] gi|282563682|gb|EFB69219.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE] Length = 340 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 106/321 (33%), Positives = 173/321 (53%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F+ Sbjct: 77 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRAAAFD 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E+PSI KA + ++ ++ D + FL +L F EG++FY FA Sbjct: 134 AVEEIPSIREKAQFCFKWMDSVEEIDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAY 192 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML E Sbjct: 193 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLRE 252 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ + + +G G+N S QY++ +A++R ++G L+ +ENPF +M E+ Sbjct: 253 AVEAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLTRLGFPALYG-SENPFSFM-ELQ 310 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 311 GVQELTNFFERRPSAYQVAVE 331 >gi|182436093|ref|YP_001823812.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776718|ref|ZP_08235983.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus XylebKG-1] gi|178464609|dbj|BAG19129.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657051|gb|EGE41897.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus XylebKG-1] Length = 338 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 107/321 (33%), Positives = 173/321 (53%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F+ Sbjct: 75 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFD 131 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E+PSI KA + ++ ++ TK + FL +L F EG++FY FA Sbjct: 132 AVEEIPSIREKAQFCFRWMDSVEKID-RLETKADRRRFLLNLICFAACIEGLFFYGAFAY 190 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML E Sbjct: 191 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDALQQQVTDMLKE 250 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ + + +G G+N S QY++ +A++R ++G P +ENPF +M E+ Sbjct: 251 AVEAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGF-PTVYGSENPFSFM-ELQ 308 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 309 GVQELTNFFERRPSAYQVAVE 329 >gi|294631326|ref|ZP_06709886.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. e14] gi|292834659|gb|EFF93008.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. e14] Length = 339 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 106/321 (33%), Positives = 173/321 (53%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A LT E+ +I R + FFA+ + Sbjct: 19 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLTPGEQHLIGRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 132 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + + ++ T+ + FL +L F EG++FY FA Sbjct: 133 AVENIPSIREKAEFCFTWMDSVEKLD-RLETRADRRRFLLNLICFAACIEGLFFYGAFAY 191 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H++F DV++ ++ E P L+ + +Q+ ML E Sbjct: 192 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPDLFDDQLEQQVTDMLRE 251 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ Sbjct: 252 AVEAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQ 309 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 310 GVQELTNFFERRPSAYQVAVE 330 >gi|310823070|ref|YP_003955428.1| ribonucleoside-diphosphate reductase subunit beta [Stigmatella aurantiaca DW4/3-1] gi|309396142|gb|ADO73601.1| Ribonucleoside-diphosphate reductase, beta subunit [Stigmatella aurantiaca DW4/3-1] Length = 336 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 109/327 (33%), Positives = 176/327 (53%), Gaps = 15/327 (4%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LNA ++ L P+ Y +E Y +A N W EV DL +SK +TD ER +I Sbjct: 2 LLNAGMNLT-LRPMAYPVFFEMYRNAIKNTWTVEEVDFSTDLVDLRSK--MTDAERHLIH 58 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--- 140 R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H Q+ +T L Sbjct: 59 RLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALH---VQFYLTLLDTYVP 115 Query: 141 ---DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D + F +PSI KA + L++ ++ + T++ + FL +L F E Sbjct: 116 DPADRAKAFAAIDNIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLLNLICFAGCIE 174 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F+ FA + L + G+A ++ RDES H+ F + I + E P L+ Sbjct: 175 GLFFFAAFAYVYFLRSKGLLHGLAAGTNWVFRDESTHMAFAFEAIRVARQEEPDLFDARM 234 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 Q M+ EA E +A + + G GL+ QY++++A++R +GL P+F+ + Sbjct: 235 QADVVAMMREAVECETLFAQDLLSGGVAGLSVQEMRQYLEYVADQRLTMLGLAPVFR-VK 293 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQ 344 N P+M ++ D+++ NFFE RV+ YQ Sbjct: 294 NSLPFM-DLQDVQELTNFFERRVSAYQ 319 >gi|302536805|ref|ZP_07289147.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp. C] gi|302445700|gb|EFL17516.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp. C] Length = 356 Score = 185 bits (470), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 105/321 (32%), Positives = 173/321 (53%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A LT E+ MI R + FFA+ + Sbjct: 36 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLTPAEQHMIGRLVAFFATGD 92 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F+ Sbjct: 93 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFD 149 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E+PSI KA + ++ ++ D + FL +L F EG++FY FA Sbjct: 150 AVEEIPSIREKAQFCFKWMDSVEKIERLETAADR-RRFLLNLICFAACIEGLFFYGAFAY 208 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML E Sbjct: 209 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKE 268 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ + + G G+N S +Y++ +A++R ++G P++ ++NPF +M E+ Sbjct: 269 AVEAELQFGRDLCGDGLPGMNTDSMREYLECVADQRLVRLGFPPVYG-SQNPFSFM-ELQ 326 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 327 GVQELTNFFERRPSAYQVAVE 347 >gi|295836584|ref|ZP_06823517.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB74] gi|197697282|gb|EDY44215.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB74] Length = 345 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 105/321 (32%), Positives = 173/321 (53%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y +A N W EV + D+A LT E+ +I R + FFA+ + Sbjct: 25 LRPMRYPDFYERYRNAIKNTWTVEEVDLHSDVA---DLAKLTPGEQHLIGRLVAFFATGD 81 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D + F Sbjct: 82 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRADAFA 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + ++ + D + FL +L F EG++FY FA Sbjct: 139 AVENIPSIREKAEFCFKWIDEVEKIDRLESKADR-RRFLLNLICFAACIEGLFFYGAFAY 197 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H++F DV++ ++ E P L+ E +Q+ + ML Sbjct: 198 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDAELEQEVKDMLDG 257 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +A + G G+N S +Y+Q +A++R ++G P++ + NPF +M E+ Sbjct: 258 AVNAELQFARDLCGDGLPGMNTESMREYLQCVADQRLQRLGFAPVYG-SSNPFSFM-ELQ 315 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 316 GVQELTNFFERRPSAYQVAVE 336 >gi|256785295|ref|ZP_05523726.1| ribonucleotide-diphosphate reductase small chain [Streptomyces lividans TK24] gi|289769189|ref|ZP_06528567.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces lividans TK24] gi|289699388|gb|EFD66817.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces lividans TK24] Length = 343 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 106/321 (33%), Positives = 175/321 (54%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 23 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLSPMEQHLIGRLVAFFATGD 79 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 80 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRAAAFA 136 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + ++ ++ S TK + FL +L F EG++FY FA Sbjct: 137 AVENIPSIREKAEFCFRWMDSVESID-RLETKADRRRFLLNLICFAACIEGLFFYGAFAY 195 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H++F DV++ ++ E P L+ + +++ ML E Sbjct: 196 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLREQVTDMLRE 255 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ Sbjct: 256 AVEAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQ 313 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 314 GVQELTNFFERRPSAYQVAVE 334 >gi|254384639|ref|ZP_04999978.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp. Mg1] gi|194343523|gb|EDX24489.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp. Mg1] Length = 338 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 108/337 (32%), Positives = 180/337 (53%), Gaps = 16/337 (4%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + D K +L+ ++ L P++Y +E+Y A N W EV + D+A LT Sbjct: 3 STDQKNLLDPGFELT-LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLTPA 58 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T Sbjct: 59 EQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTL 115 Query: 138 LGL------DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 L D F+ E+PSI KA + ++ + D + FL +L Sbjct: 116 LDTYLPDPDDRAAAFDAVEEIPSIREKAQFCFKWINEVEKLDRLETQADR-RRFLLNLIC 174 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F EG++FY FA + + G+A ++ RDE++H+NF +V++ ++ E P Sbjct: 175 FAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPE 234 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L+ QQ+ ML EA E+ + + G G+N S +Y++ +A++R ++G P Sbjct: 235 LFDDALQQQVTDMLKEAVDAELQFGRDLCGDGLPGMNTESMREYLECVADQRLVRLGFAP 294 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 ++ ++NPF +M E+ +++ NFFE R + YQ E Sbjct: 295 VYG-SQNPFSFM-ELQGVQELTNFFERRPSAYQVAVE 329 >gi|21223593|ref|NP_629372.1| ribonucleotide-diphosphate reductase small chain [Streptomyces coelicolor A3(2)] gi|7328345|emb|CAB82486.1| class I ribonucleotide-diphosphate reductase small subunit chain [Streptomyces coelicolor A3(2)] gi|8546891|emb|CAB94610.1| ribonucleotide-diphosphate reductase small chain [Streptomyces coelicolor A3(2)] Length = 343 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 106/321 (33%), Positives = 175/321 (54%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 23 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLSPMEQHLIGRLVAFFATGD 79 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 80 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRAAAFA 136 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + ++ ++ S TK + FL +L F EG++FY FA Sbjct: 137 AVENIPSIREKAEFCFRWMDSVESID-RLETKADRRRFLLNLICFAACIEGLFFYGAFAY 195 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H++F DV++ ++ E P L+ + +++ ML E Sbjct: 196 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLREQVTDMLRE 255 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ Sbjct: 256 AVEAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQ 313 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 314 GVQELTNFFERRPSAYQVAVE 334 >gi|302542646|ref|ZP_07294988.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces hygroscopicus ATCC 53653] gi|302460264|gb|EFL23357.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces himastatinicus ATCC 53653] Length = 343 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 104/321 (32%), Positives = 171/321 (53%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +++Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 23 LRPMRYPQFYDRYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMISRLVAFFATGD 79 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 80 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAASFA 136 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + ++ ++ D + FL +L F EG++FY FA Sbjct: 137 AVENIPSIREKAEFCFRWMDSVEKIDRLESKADR-RRFLLNLICFAACIEGLFFYGAFAY 195 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDES+H+ F V++ ++ E P L+ + +++ ML E Sbjct: 196 VYWFRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVREEEPDLFDDDLERQVTDMLKE 255 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +AH+ G G+N S Y++ +A++R ++G +F +ENPF +M E+ Sbjct: 256 AVEAELQFAHDLCGDGLPGMNTESMRAYLECVADQRLARLGFPAVFG-SENPFSFM-ELQ 313 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 D+++ NFFE R + YQ E Sbjct: 314 DVQELTNFFERRASAYQVAVE 334 >gi|302554045|ref|ZP_07306387.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces viridochromogenes DSM 40736] gi|302471663|gb|EFL34756.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces viridochromogenes DSM 40736] Length = 341 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 105/321 (32%), Positives = 174/321 (54%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 21 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPAEQHLIGRLVAFFATGD 77 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 78 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRTAAFA 134 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA++ ++ ++ D + FL +L F EG++FY FA Sbjct: 135 AVENIPSIREKASFCFKWMDSVEKLDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAY 193 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H++F DV++ ++ E P L+ + +Q+ ML E Sbjct: 194 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLRQEVTDMLRE 253 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ Sbjct: 254 AVEAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQ 311 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 312 GVQELTNFFERRPSAYQVAVE 332 >gi|225873704|ref|YP_002755163.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium capsulatum ATCC 51196] gi|225791613|gb|ACO31703.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium capsulatum ATCC 51196] Length = 340 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 101/317 (31%), Positives = 173/317 (54%), Gaps = 8/317 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++ + N W EV Q DL K + L+ E +I+R + FFA+ + Sbjct: 19 LRPMRYPVFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LSPAEVHLIQRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 S+V+NN+VL +Y+H+++PE R YL RQ +EEAVH + ++ + D F Sbjct: 77 SIVSNNLVLNLYKHINSPEARLYLSRQLYEEAVHVQFYLTLLDNYVPDPEARAAAFAAVE 136 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI+ KA++ +++ ++ T++ ++FL +L F EG++F+ FA + Sbjct: 137 NIPSISKKADFCMKWMDSIQQLD-ELKTREHRRQFLLNLICFAACIEGLFFFAAFAYVYF 195 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES HL F +V+N ++ + P LW + + MLHEA Sbjct: 196 LRSKGLLHGLASGTNWVFRDESCHLEFAFEVVNVVRSQEPDLWDAQLEADIVEMLHEAVD 255 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E +A + + G GL+ QY+ ++A+ R ++G+ P F +NPF +M E+ D++ Sbjct: 256 AETQFAEDLLSGGVAGLSVRDMRQYLGYVADSRLQRLGIAPAFG-VKNPFSFM-ELQDVQ 313 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV+ YQ Sbjct: 314 ELTNFFERRVSAYQTAV 330 >gi|271967540|ref|YP_003341736.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] gi|270510715|gb|ACZ88993.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] Length = 331 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 105/318 (33%), Positives = 171/318 (53%), Gaps = 9/318 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y +A N W EV + DLA +T +ER +I R + FFA+ + Sbjct: 11 LRPMRYPEFYERYRAAIRNTWTVEEVDLNSDLA---DLARMTPEERHLINRLVAFFATGD 67 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+VANN+VL +Y+H++ PE R YL RQ FEEAVH + ++ + D E F Sbjct: 68 SIVANNLVLNLYQHVNAPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDHDERVKAFAAVE 127 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ +L +D + FL +L F EG++FY FA + Sbjct: 128 HIPSIRNKAEFCFRWIDSLGGLDRLESREDR-RAFLLNLICFAACIEGLFFYGAFAYVYW 186 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDES+H+ F V++ ++ E P L+ + + M+ EA Sbjct: 187 FRSRGLLSGLATGTNWVFRDESMHMEFAFSVVDTVRAEEPDLFDDKLGAQVTQMIEEAVE 246 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+A+A + G G+N QY++++A++R ++ P+ T NPF +M E+ D++ Sbjct: 247 AELAFAADLCGDGMSGMNVEQMRQYLEYVADQRLVRLRF-PVRYGTANPFAFM-ELQDVQ 304 Query: 331 KEKNFFETRVTEYQQGAE 348 + NFFE RV+ YQ E Sbjct: 305 ELANFFERRVSAYQVAVE 322 >gi|297202281|ref|ZP_06919678.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sviceus ATCC 29083] gi|197710199|gb|EDY54233.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sviceus ATCC 29083] Length = 340 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 105/321 (32%), Positives = 171/321 (53%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+ L+ E+ +I R + FFA+ + Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVT---DLAKLSPAEQHLIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F+ Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPQDRAAAFD 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + ++ + D + FL +L F EG++FY FA Sbjct: 134 AVENIPSIREKAEFCFRWINEVEKLDRLESQADR-RRFLLNLICFAACIEGLFFYGAFAY 192 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H++F DV++ ++ E P L+ QQ+ ML E Sbjct: 193 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDRLQQQVTDMLAE 252 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ Sbjct: 253 AVEAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQ 310 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 311 GVQELTNFFERRPSAYQVAVE 331 >gi|307328555|ref|ZP_07607729.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger Tu 4113] gi|306885823|gb|EFN16835.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger Tu 4113] Length = 340 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 108/335 (32%), Positives = 180/335 (53%), Gaps = 16/335 (4%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D K +L+ ++ L P++Y +++Y A N W EV + D+ L+ E+ Sbjct: 7 DTKNLLDPGFELT-LRPMRYPEFYDRYRDAIKNTWTVEEVDLHSDVT---DLAKLSPGEQ 62 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 +I R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L Sbjct: 63 HLIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLD 119 Query: 140 L------DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 D F +PSI KA + ++ ++ TK + FL +L F Sbjct: 120 TYLPDPDDRAAAFAAVENIPSIREKAEFCFRWMDSVEKID-RLETKQDRRRFLLNLICFA 178 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++FY FA + L + G+A ++ RDES+H+ F V++ ++ E P L+ Sbjct: 179 ACIEGLFFYGAFAYVYWLRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVREEEPDLF 238 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E +Q+ ML EA E+ +A + G G+N S ++Y+Q +A++R ++G +F Sbjct: 239 DDELRQQVTDMLKEAVEAELQFARDLCGDGLPGMNTASMQEYLQCVADQRLMRLGFPAVF 298 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 +ENPF +M E+ ++++ NFFE R + YQ E Sbjct: 299 G-SENPFSFM-ELQNVQELTNFFERRASAYQVAVE 331 >gi|302558498|ref|ZP_07310840.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces griseoflavus Tu4000] gi|302476116|gb|EFL39209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces griseoflavus Tu4000] Length = 341 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 105/321 (32%), Positives = 174/321 (54%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ +E+ +I R + FFA+ + Sbjct: 21 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVA---DLAKLSPEEQHLIGRLVAFFATGD 77 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 78 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 134 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + ++ ++ D + FL +L F EG++FY FA Sbjct: 135 AVENIPSIREKAEFCFRWMDSVEKLDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAY 193 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H++F DV++ ++ E P L+ ++ Q+ ML E Sbjct: 194 VYWFRGRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDEQLGQQVTAMLRE 253 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ Sbjct: 254 AVEAELQFARDLCGDGLPGMNTESMRQYLECVADQRLVRLGFAPVYG-SENPFSFM-ELQ 311 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 312 GVQELTNFFERRPSAYQVAVE 332 >gi|108763495|ref|YP_633213.1| ribonucleoside-diphosphate reductase subunit beta [Myxococcus xanthus DK 1622] gi|108467375|gb|ABF92560.1| ribonucleoside-diphosphate reductase, beta subunit [Myxococcus xanthus DK 1622] Length = 349 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 104/314 (33%), Positives = 171/314 (54%), Gaps = 8/314 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y +E Y +A N W EV DL +SK +TD ER +I R + FFA+ + Sbjct: 24 LRPMAYPQFFEMYRNAIKNTWTVEEVDFSTDLVDLRSK--MTDAERHLIHRLVAFFATGD 81 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + D E F Sbjct: 82 SIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPAERAMAFAAVD 141 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + +++ ++ T TK ++FL +L F EG++F+ FA + Sbjct: 142 NIPSIQRKAQFCMKWMDSIQGLD-TLQTKAHRRQFLLNLICFAGCIEGLFFFAAFAYVYF 200 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES H+ F + I + E P L+ + ++ ML EA Sbjct: 201 LRSKGLLNGLAAGTNWVFRDESAHMAFAFESIQVARKEEPDLFDAQMERDVVAMLREAVE 260 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E +A + + G +GL+ Y++++A++R +G+ P+F T+NP +M ++ D++ Sbjct: 261 CETQFAQDLLSGGVMGLSVQDMRGYLEYVADQRLQMLGMTPVFG-TKNPLHFM-DLQDVQ 318 Query: 331 KEKNFFETRVTEYQ 344 + NFFE RV+ YQ Sbjct: 319 ELTNFFERRVSSYQ 332 >gi|168702494|ref|ZP_02734771.1| ribonucleoside-diphosphate reductase, beta subunit [Gemmata obscuriglobus UQM 2246] Length = 332 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 103/316 (32%), Positives = 171/316 (54%), Gaps = 8/316 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E Y A N W EV DLA + + +T ER +I R + FFA+ + Sbjct: 11 LRPMRYPPFFEMYKDAIKNTWTVDEVDFSTDLADLRGR--VTPAERHLIHRLVAFFATGD 68 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152 S+V NN+VL +Y+H++ PE R YL RQ +EEA+H + ++ + D + V Sbjct: 69 SIVGNNLVLNLYKHVNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDMAAREAAFAAVD 128 Query: 153 --PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 PSI KA++ ++ ++ T+ + FL +L F EG++F+ FA + Sbjct: 129 NIPSIKLKADFCFKWIDSIEGLD-RLETRAHRRAFLLNLVCFAACIEGLFFFAAFAYVYF 187 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES H+ F VI+ ++ E P L+ E + + ML EA Sbjct: 188 LRSKGLLHGLATGTNWVFRDESAHMAFAFRVIDTVRREEPDLFDAELEAQIVAMLREAVE 247 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E A+A + + +G GL+ Y++++A+RR +G+ P+F +NPF +M ++ D++ Sbjct: 248 CETAFARDVLGQGVAGLSLADLRSYLEYVADRRLESLGIAPVFG-AKNPFGFM-DLQDVQ 305 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE RV+ YQ G Sbjct: 306 ELTNFFERRVSAYQLG 321 >gi|239929012|ref|ZP_04685965.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces ghanaensis ATCC 14672] Length = 339 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 104/321 (32%), Positives = 171/321 (53%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 19 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPAEQHLIGRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 132 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + + ++ D + FL +L F EG++FY FA Sbjct: 133 AVENIPSIREKAEFCFTWMDSVEKLDRLQTQADR-RRFLLNLICFAACIEGLFFYGAFAY 191 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H++F DV++ ++ E P L+ + Q+ ML E Sbjct: 192 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDERLGQQVTDMLRE 251 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +A + G G+N S QY++ +A++R ++G P++ ++NPF +M E+ Sbjct: 252 AVEAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQ 309 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 310 GVQELTNFFERRPSAYQVAVE 330 >gi|254388985|ref|ZP_05004216.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces clavuligerus ATCC 27064] gi|294814921|ref|ZP_06773564.1| Ribonucleoside-diphosphate reductase beta chain protein [Streptomyces clavuligerus ATCC 27064] gi|326443293|ref|ZP_08218027.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus ATCC 27064] gi|197702703|gb|EDY48515.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces clavuligerus ATCC 27064] gi|218078699|emb|CAB90708.3| class Ia ribonucleotide-diphosphate reductase small subunit chain [Streptomyces clavuligerus ATCC 27064] gi|294327520|gb|EFG09163.1| Ribonucleoside-diphosphate reductase beta chain protein [Streptomyces clavuligerus ATCC 27064] Length = 339 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 105/325 (32%), Positives = 173/325 (53%), Gaps = 15/325 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+ L+ E+ +I R + FFA+ + Sbjct: 19 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDV---PDLAKLSPGEQHLIGRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRNAAFA 132 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + ++ ++ T+ + FL +L F EG++FY FA Sbjct: 133 AVENIPSIREKAQFCFRWMDSVEKLD-QLETQADRRRFLLNLICFAACIEGLFFYGAFAY 191 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML E Sbjct: 192 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKE 251 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ ++ + G G+N S +Y+Q +A++R ++G P++ +ENPF +M E+ Sbjct: 252 AVEAELQFSRDLCGDGLPGMNTESMREYLQCVADQRLARLGFAPVYG-SENPFSFM-ELQ 309 Query: 328 DLKKEKNFFETRVTEYQQGAELKWD 352 +++ NFFE R + YQ E D Sbjct: 310 GVQELTNFFERRPSAYQVAVEGSVD 334 >gi|291437353|ref|ZP_06576743.1| ribonucleotide-diphosphate reductase small chain [Streptomyces ghanaensis ATCC 14672] gi|291340248|gb|EFE67204.1| ribonucleotide-diphosphate reductase small chain [Streptomyces ghanaensis ATCC 14672] Length = 340 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 104/321 (32%), Positives = 171/321 (53%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPAEQHLIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + + ++ D + FL +L F EG++FY FA Sbjct: 134 AVENIPSIREKAEFCFTWMDSVEKLDRLQTQADR-RRFLLNLICFAACIEGLFFYGAFAY 192 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H++F DV++ ++ E P L+ + Q+ ML E Sbjct: 193 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDERLGQQVTDMLRE 252 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +A + G G+N S QY++ +A++R ++G P++ ++NPF +M E+ Sbjct: 253 AVEAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQ 310 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 311 GVQELTNFFERRPSAYQVAVE 331 >gi|290957506|ref|YP_003488688.1| ribonucleotide-diphosphate reductase small chain [Streptomyces scabiei 87.22] gi|260647032|emb|CBG70131.1| ribonucleotide-diphosphate reductase small chain [Streptomyces scabiei 87.22] Length = 355 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 101/322 (31%), Positives = 174/322 (54%), Gaps = 9/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L++ E+ MI R + FFA+ + Sbjct: 35 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSEGEQHMIGRLVAFFATGD 91 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 92 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRVAAFAAVE 151 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ D + FL +L F EG++FY FA + Sbjct: 152 NIPSIREKAEFCFKWMDSVEKLDRLESQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 210 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H++F +V++ ++ E P L+ + +Q+ ML EA Sbjct: 211 FRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDELLRQQVTDMLKEAVE 270 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ + + G G+N S QY++ +A++R ++G P++ ++NPF +M E+ ++ Sbjct: 271 AELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 328 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE R + YQ E D Sbjct: 329 ELTNFFERRPSAYQVAVEGTVD 350 >gi|318060206|ref|ZP_07978929.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actG] gi|318077113|ref|ZP_07984445.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actF] gi|333024515|ref|ZP_08452579.1| putative ribonucleoside-diphosphate reductase beta chain [Streptomyces sp. Tu6071] gi|332744367|gb|EGJ74808.1| putative ribonucleoside-diphosphate reductase beta chain [Streptomyces sp. Tu6071] Length = 345 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 102/321 (31%), Positives = 171/321 (53%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D++ LT E+ +I R + FFA+ + Sbjct: 25 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVS---DLAKLTPGEQHLIGRLVAFFATGD 81 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 82 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI AKA + ++ + D + FL +L F EG++FY FA Sbjct: 139 AVENIPSIRAKAEFCFKWIDEVEKIDRLESRSDR-RRFLLNLICFAACIEGLFFYGAFAY 197 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H++F DV++ ++ E P L+ + + + + ML Sbjct: 198 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLEAEVKEMLAG 257 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +A + G G+N S +Y+Q +A++R ++G P++ + NPF +M E+ Sbjct: 258 AVDAELQFARDLCGDGLPGMNTESMREYLQCVADQRLVRLGFSPVYG-SSNPFSFM-ELQ 315 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 316 GVQELTNFFERRPSAYQVAVE 336 >gi|302521843|ref|ZP_07274185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB78] gi|302430738|gb|EFL02554.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB78] Length = 345 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 102/321 (31%), Positives = 171/321 (53%), Gaps = 15/321 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D++ LT E+ +I R + FFA+ + Sbjct: 25 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVS---DLAKLTPGEQHLIGRLVAFFATGD 81 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 82 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPDDRAAAFA 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI AKA + ++ + D + FL +L F EG++FY FA Sbjct: 139 AVENIPSIRAKAEFCFKWIDEVEKIDRLESQSDR-RRFLLNLICFAACIEGLFFYGAFAY 197 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H++F DV++ ++ E P L+ + + + + ML Sbjct: 198 VYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLEAEVKEMLAG 257 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ +A + G G+N S +Y+Q +A++R ++G P++ + NPF +M E+ Sbjct: 258 AVDAELQFARDLCGDGLPGMNTESMREYLQCVADQRLVRLGFSPVYG-SSNPFSFM-ELQ 315 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 +++ NFFE R + YQ E Sbjct: 316 GVQELTNFFERRPSAYQVAVE 336 >gi|320107274|ref|YP_004182864.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4] gi|319925795|gb|ADV82870.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4] Length = 346 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 104/320 (32%), Positives = 173/320 (54%), Gaps = 14/320 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++ + N W EV Q DL K + LT E I+R + FFA+ + Sbjct: 25 LRPMRYPQFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LTPAEIHTIQRLVAFFATGD 82 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGE----LFN 147 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L + E E F Sbjct: 83 SIVSNNLVLNLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDNYIPEPEERNAAFA 139 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI+ KA++ +++ ++ TK+ ++FL +L F EG++F+ FA Sbjct: 140 AVENIPSISKKADFCMKWMDSIQQLD-QLETKEHRRQFLLNLICFAACIEGLFFFAAFAY 198 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDES HL F +V+ ++ + P LW E +++ M+ E Sbjct: 199 VYFFRSKGLLHGLASGTNWVFRDESAHLEFAFEVVQVVRAQEPDLWDTELERQVVVMMEE 258 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E +A + + G GL+ QY+ ++A+ R ++G+ F +NPF +M E+ Sbjct: 259 AIDAEAQFAEDLLSGGVAGLSVRDMRQYLGYVADSRLERLGIGAHFN-AKNPFSFM-ELQ 316 Query: 328 DLKKEKNFFETRVTEYQQGA 347 D+++ NFFE RV+ YQ Sbjct: 317 DVQELTNFFERRVSAYQTAV 336 >gi|149916691|ref|ZP_01905193.1| putative ribonucleoside-diphosphate reductase beta chain [Plesiocystis pacifica SIR-1] gi|149822408|gb|EDM81797.1| putative ribonucleoside-diphosphate reductase beta chain [Plesiocystis pacifica SIR-1] Length = 356 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 105/322 (32%), Positives = 167/322 (51%), Gaps = 8/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y + +Y A N W EV DL + G ER +I+R + FFA+ + Sbjct: 35 LRPMAYPDFYAQYRQAIRNTWTVEEVDFSTDLRDLAERMGPA--ERHLIQRLVAFFATGD 92 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+VANN+VL++YRHL+ PE R YL RQ +EEA+H + ++ + D + F Sbjct: 93 SIVANNLVLSLYRHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPDQRHAAFAAVE 152 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + L++ T+++ G Q FL +L F EG++FY FA + Sbjct: 153 TIPSIRRKAEFCLRWQDTVAAIPRLDGPAHRRQ-FLLNLICFAACTEGLFFYGAFAYVYF 211 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES H+ F VI+ ++ + P L+ E + M+ EA Sbjct: 212 LRSRGLLHGLAAGTNWVFRDESAHMAFAFSVIDVVRDQEPELFDAELEAAVVEMIEEAVA 271 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+A+A + + G GL Y+++ A++R ++G+ + T NP +M E+ D+ Sbjct: 272 CEVAFAEDLLGLGVAGLTVADLRAYLEYCADQRLQRLGMATRYGST-NPLSFM-ELQDIP 329 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE RV+ YQ G D Sbjct: 330 ELANFFERRVSAYQHGVSGTID 351 >gi|291303011|ref|YP_003514289.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis DSM 44728] gi|290572231|gb|ADD45196.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis DSM 44728] Length = 338 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 105/328 (32%), Positives = 178/328 (54%), Gaps = 16/328 (4%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 R+L+ D+ L P++Y +E++ +A N W EV + DL + TD ER +I Sbjct: 8 RLLDPGMDLT-LRPMRYPDFYEQFRAAIRNTWTVEEVDLASDLPDLAT---FTDSERHLI 63 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140 R + FFA+ +++VANN+VL +Y+H++ PE R YL RQ +EEAVH Q+ +T L Sbjct: 64 NRLVAFFATGDTIVANNLVLNLYKHVNAPEARLYLSRQLYEEAVH---VQFYLTLLDTYL 120 Query: 141 ----DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D + F +PSI KA + ++ T+ T + + FL +L F Sbjct: 121 PDPEDRVKAFAAVEHIPSIKEKAEFCFKWIDTIDQLD-ELRTPEDRRAFLLNLICFAACI 179 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++FY FA + L + G+A ++ RDES H+NF V++ ++ E P L+ E Sbjct: 180 EGLFFYGAFAYVYWLRSRGLLDGLATGTNWVFRDESCHMNFAFSVVDVVRNEEPELFDDE 239 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + M+ EA E+ +A + +G G+ + Y++++A++R ++G+ P+ + Sbjct: 240 LTEAVTRMIEEAVAAELQFARDLCGEGMPGMTVNDMKSYLEYVADQRLTRLGM-PVRYGS 298 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 +NPF +M+ + D+++ NFFE R T YQ Sbjct: 299 KNPFGFMA-LQDVQELTNFFERRPTAYQ 325 >gi|162452149|ref|YP_001614516.1| ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce 56'] gi|161162731|emb|CAN94036.1| Ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce 56'] Length = 339 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 103/319 (32%), Positives = 170/319 (53%), Gaps = 15/319 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y +E Y SA N W EV D+ + +TD ER +++R + FFA+ + Sbjct: 19 LRPMAYPAFFEMYRSAIKNTWTVEEVDFSTDVGDLRK---MTDAERHLVQRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +YRH++ PE R YL RQ +EEA+H Q+ +T L D F Sbjct: 76 SIVANNLVLNLYRHINAPEARMYLSRQLYEEALH---VQFYLTLLDTYIPDPEDRHRAFA 132 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA++ +++ ++ S T+ + FL +L F EG++F+ FA Sbjct: 133 AVENIPSIRQKADFCMRWLDSVESLG-RLDTRAERRRFLLNLICFAACVEGLFFFGAFAY 191 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + L + G+A ++ RDES H+ F +V++ + E P L+ + M+ E Sbjct: 192 VYFLRSRGLLHGLAAGTSWVFRDESAHMRFAFEVVSTARREEPELFDAGLARSILDMMDE 251 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E +A + + G G++A +Y++F A++R +G+ P +NPF +M ++ Sbjct: 252 AIACEARFAEDLLGAGVAGMSARDVRRYLEFCADQRLATLGM-PKRYGAKNPFSFM-DLQ 309 Query: 328 DLKKEKNFFETRVTEYQQG 346 D+++ NFFE RV+ YQ G Sbjct: 310 DVQEVTNFFERRVSAYQVG 328 >gi|11544904|emb|CAC17630.1| class I ribonucleotide-diphosphate reductase small subunit chain [Streptomyces jumonjinensis] Length = 322 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 102/312 (32%), Positives = 167/312 (53%), Gaps = 15/312 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+ LT E+ +I R + FFA+ + Sbjct: 19 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVT---DLAKLTPGEQHLIGRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFN 147 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Q+ +T L D F Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVH---VQFYLTLLDTYLPDPEDRTAAFA 132 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +PSI KA + ++ ++ T+ + FL +L F EG++FY FA Sbjct: 133 AVENIPSIREKAQFCFKWMDSVEKID-QLETQADRRRFLLNLICFAACIEGLFFYGAFAY 191 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML E Sbjct: 192 VYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLQE 251 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A E+ + + G G+N S +Y+Q +A++R ++G P++ +ENPF +M E+ Sbjct: 252 AVEAELQFGSDLCGDGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SENPFSFM-ELQ 309 Query: 328 DLKKEKNFFETR 339 +++ NFFE R Sbjct: 310 GVQELTNFFERR 321 >gi|190572323|ref|YP_001970168.1| putative ribonucleotide diphosphate reductase, small chain [Stenotrophomonas maltophilia K279a] gi|190010245|emb|CAQ43853.1| putative ribonucleotide diphosphate reductase, small chain [Stenotrophomonas maltophilia K279a] Length = 339 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 98/318 (30%), Positives = 174/318 (54%), Gaps = 8/318 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++ Y +A N W E+ Q D+ SK ++ ER +I R + FFA+ + Sbjct: 18 LRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHSK--MSPGERHLIHRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + D E F+ Sbjct: 76 SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPEERAKAFSAVE 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + SI KA++ ++ ++ S + T++ ++FL + F EG++F+ FA + Sbjct: 136 NIDSIKKKADFCFKWIDSIQSLT-RIETREQRRQFLLNQICFAACIEGLFFFAAFAYVYY 194 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDES H+ F + + ++ E P L+ +E +Q+ ML EA Sbjct: 195 FRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDEEMKQQVYDMLAEAIE 254 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + + G G++ QY+Q A++ ++G+E + NP P+M E+ D++ Sbjct: 255 CEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYN-VRNPLPFM-ELQDVQ 312 Query: 331 KEKNFFETRVTEYQQGAE 348 + NFFE RV+ YQ G + Sbjct: 313 ELTNFFERRVSAYQVGVQ 330 >gi|11544907|emb|CAC17632.1| class I ribonucleotide-diphosphate reductase small chain [Streptomyces microflavus] Length = 321 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 100/309 (32%), Positives = 169/309 (54%), Gaps = 9/309 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVA---DLAKLSPGEQHMIGRLVAFFATGD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D E + V Sbjct: 75 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPAERAAAFAAVE 134 Query: 153 --PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 PSI KA + ++ ++ T+ + FL +L F EG++FY FA + Sbjct: 135 NIPSIRDKAQFCFKWMDSVEKID-QLETRADRRRFLLNLICFAACIEGLFFYGAFAYVYW 193 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H+NF +V++ ++ E P L+ Q++ ML EA Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQEQVTAMLKEAVE 253 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ + + +G G+N S +Y+Q +A++R ++G P++ +ENPF +M E+ ++ Sbjct: 254 AELQFGRDLCGEGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SENPFAFM-ELQGVQ 311 Query: 331 KEKNFFETR 339 + NFFE R Sbjct: 312 ELTNFFERR 320 >gi|194363985|ref|YP_002026595.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia R551-3] gi|194346789|gb|ACF49912.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia R551-3] Length = 339 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/318 (30%), Positives = 171/318 (53%), Gaps = 8/318 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++ Y +A N W E+ Q D++ SK ++ ER +I R + FFA+ + Sbjct: 18 LRPMRYPQFYDMYRNAIKNTWTVEEINFQIDISDLHSK--MSPGERHLIHRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + D E F Sbjct: 76 SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPDERVKAFAAVE 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + SI KA++ ++ ++ + T++ ++FL + F EG++F+ FA + Sbjct: 136 NIDSIKKKADFCFKWIDSIQNLK-RIETREERRQFLLNQICFAACIEGLFFFAAFAYVYY 194 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDES H++F + ++ I+ E P L+ + +Q ML EA Sbjct: 195 FRSRGLLNGLASGTNWVFRDESAHMDFAFECVDVIREEEPDLFDDKMKQDVYDMLAEAIE 254 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + + G G++ QY+Q A+ H++G+E + NP +M E+ D++ Sbjct: 255 CEVQFAEDVLSGGVAGISTRDMRQYLQHCADNHFHRLGMERKYN-VRNPLSFM-ELQDVQ 312 Query: 331 KEKNFFETRVTEYQQGAE 348 + NFFE R + YQ G + Sbjct: 313 ELTNFFERRASAYQVGVQ 330 >gi|254521240|ref|ZP_05133295.1| ribonucleoside-diphosphate reductase, beta subunit [Stenotrophomonas sp. SKA14] gi|219718831|gb|EED37356.1| ribonucleoside-diphosphate reductase, beta subunit [Stenotrophomonas sp. SKA14] Length = 339 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/318 (30%), Positives = 169/318 (53%), Gaps = 8/318 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++ Y +A N W E+ Q D+ SK ++ ER +I R + FFA+ + Sbjct: 18 LRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHSK--MSPGERHLIHRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + D E F Sbjct: 76 SIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPEERVKAFAAVE 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + SI KA++ ++ ++ T+ ++FL + F EG++F+ FA + Sbjct: 136 NIDSIKKKADFCFKWIDSIQDLK-RIETRAERRQFLLNQICFAACIEGLFFFAAFAYVYY 194 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDES H+ F + + ++ E P L+ E +Q+ ML EA Sbjct: 195 FRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDDEMKQQVYDMLAEAIE 254 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + + G G++ QY+Q A++ ++G+E + NP P+M E+ D++ Sbjct: 255 CEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYN-VRNPLPFM-ELQDVQ 312 Query: 331 KEKNFFETRVTEYQQGAE 348 + NFFE RV+ YQ G + Sbjct: 313 ELTNFFERRVSAYQVGVQ 330 >gi|253827828|ref|ZP_04870713.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter canadensis MIT 98-5491] gi|313142391|ref|ZP_07804584.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter canadensis MIT 98-5491] gi|253511234|gb|EES89893.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter canadensis MIT 98-5491] gi|313131422|gb|EFR49039.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter canadensis MIT 98-5491] Length = 341 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 97/332 (29%), Positives = 184/332 (55%), Gaps = 13/332 (3%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +V+++R+ + + +L +KY WA+ + N W P EV M D + +GLT Sbjct: 15 SVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKRDYA--DGLTP 72 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E++ R L +SL NN++ + ++++PE L+RQAFEEA+HS ++ ++ Sbjct: 73 EEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVE 132 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 S+ + E+++M+R + AK ++ + + L+ T ++ ++ +F ++ Sbjct: 133 SISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLA-------TNPIERNIIKAMFANQIL- 184 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++FY+GFA +L R+ KM+G A+ ++I RDE HL ++IN +K E+P L+TK+ Sbjct: 185 EGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINSVKKESPELFTKD 244 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +++ M EA +E A+ +GL + ++Y++++A+ R +IGL L+ Sbjct: 245 LEEEVIEMFREAVKVETAWGEYITQGQILGLTSEIIQEYIKYLADERLRRIGLPTLYN-A 303 Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 ++P W+ ++K NFFE VT Y +G+ Sbjct: 304 KHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 335 >gi|224418874|ref|ZP_03656880.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter canadensis MIT 98-5491] Length = 340 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 97/332 (29%), Positives = 184/332 (55%), Gaps = 13/332 (3%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +V+++R+ + + +L +KY WA+ + N W P EV M D + +GLT Sbjct: 14 SVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKRDYA--DGLTP 71 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E++ R L +SL NN++ + ++++PE L+RQAFEEA+HS ++ ++ Sbjct: 72 EEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVE 131 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 S+ + E+++M+R + AK ++ + + L+ T ++ ++ +F ++ Sbjct: 132 SISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLA-------TNPIERNIIKAMFANQIL- 183 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++FY+GFA +L R+ KM+G A+ ++I RDE HL ++IN +K E+P L+TK+ Sbjct: 184 EGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINSVKKESPELFTKD 243 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +++ M EA +E A+ +GL + ++Y++++A+ R +IGL L+ Sbjct: 244 LEEEVIEMFREAVKVETAWGEYITQGQILGLTSEIIQEYIKYLADERLRRIGLPTLYN-A 302 Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 ++P W+ ++K NFFE VT Y +G+ Sbjct: 303 KHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 334 >gi|254456975|ref|ZP_05070403.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacterales bacterium GD 1] gi|207085767|gb|EDZ63051.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacterales bacterium GD 1] Length = 340 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 98/336 (29%), Positives = 180/336 (53%), Gaps = 14/336 (4%) Query: 14 EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + + NV+D+++ + + +L +KY WA+ + NN W P EV M D+ +K+ Sbjct: 10 DSKENVNDRKVFGGDPTGIFELNNIKYQWAYNLWEVMLNNTWFPKEVDMTRDVNDYKN-- 67 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT++E+ + L +SL NN++ + ++++PE L+RQ+FEEA+HS ++ Sbjct: 68 -LTENEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTSPEINLILVRQSFEEALHSQSYA 126 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 ++ S+ + E+++++R + K + + Q L++ + F++ F Sbjct: 127 VMVDSISTNSAEIYDLWRRDMMLKGKNDAIARVYQELAANP-------TEHNFVKACFAN 179 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 ++ EG++FY+GF I +L R+ KM+G A+ ++I RDE HL ++IN ++ E P L Sbjct: 180 QIL-EGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINTLRKERPDL 238 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 +T + +++ M EA LE + +GL EQY++F+A+ R +G E L Sbjct: 239 FTDKLKEEVIAMFKEAVQLESEWGKYITQGQILGLTNDIVEQYIKFLADERLTAVGFEKL 298 Query: 313 FKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 + T NP W+ + +K NFFE VT Y +G+ Sbjct: 299 YNVT-NPIKWVDDFAKFNDQKTNFFEGTVTNYSKGS 333 >gi|78776214|ref|YP_392529.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurimonas denitrificans DSM 1251] gi|78496754|gb|ABB43294.1| Ribonucleoside-diphosphate reductase [Sulfurimonas denitrificans DSM 1251] Length = 340 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 101/337 (29%), Positives = 180/337 (53%), Gaps = 16/337 (4%) Query: 14 EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E NV+D+R+ + + +L +KY WA+ + NN W P EV M D++ +K Sbjct: 10 ESNENVNDRRIFGGNPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDVSDYKQ-- 67 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 +TD E+ + L +SL NNI+ I ++++PE L+RQA+EEA+HS ++ Sbjct: 68 -ITDVEKASYDKALAQLIFMDSLQTNNIMDNINPYVTSPEINLILVRQAYEEALHSQSYA 126 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-SPSFTTGTKDADQEFLQDLFV 191 ++ ++ + E++ ++R + K + + + LS +P+ + F++ F Sbjct: 127 VMVDTISTNSKEIYELWRRDMMLKGKNDAIARVYEELSKNPT--------EHNFVKACFA 178 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 ++ EG++FY+GFA I +L R+ KM+G A+ ++I RDE HL ++IN ++ E P Sbjct: 179 NQIL-EGIYFYSGFAYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINSLRKERPD 237 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L+ ++ +++ M EA LE+A+ +GL EQY+Q++A+ R +G Sbjct: 238 LFNEKLKEEVIEMFKEAVALEVAWGKYITGGQILGLTDAIIEQYIQYLADDRLTSVGFAK 297 Query: 312 LFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 L+ T NP W+ + +K NFFE V Y +G+ Sbjct: 298 LYNVT-NPIKWVDDFSKFNDQKTNFFEGTVANYSKGS 333 >gi|195953600|ref|YP_002121890.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1] gi|195933212|gb|ACG57912.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1] Length = 319 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 163/296 (55%), Gaps = 16/296 (5%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A NN+W+P E + +D + K L D ER + +GFF+S+E V NI L I Sbjct: 37 YTKAKNNYWIPEEYDLANDKHEFYEK--LNDIERHYMLHTVGFFSSAEGWVGQNI-LEIS 93 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 + + N E R +L Q EE H TF+YI+ L L E++ M+ V I KA++ ++ Sbjct: 94 KRIRNTETRMFLGYQLMEEMKHIDTFRYIMDGLDLKPHEVYAMHENVKEIKRKADFEVKR 153 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 L ++ ++D+FV+Y + EG++F++GF L+ GR + +A + Sbjct: 154 AMALCEEP-------TEENLIEDIFVYYAILEGLFFFSGFVTPLAFGRRGVLKNVAALVR 206 Query: 226 YIMRDESLHLNFGIDVINQ-IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 +I++DE+ HL FGI ++N+ +K +N + +++ K R ++ EA +E YA MP+ Sbjct: 207 WILKDETRHLAFGIYLLNELLKDKNKN----DYKDKFRVLMEEAVDIETEYARVAMPEKI 262 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 +GL+ + Y++++A+RR +G + ++ +NP W++ DL NFFE +V Sbjct: 263 IGLSFETYTSYVKYLADRRMRSLGFDAIYG-QKNPMKWLTTQTDLPDLTNFFEAKV 317 >gi|152989800|ref|YP_001355522.1| ribonucleotide-diphosphate reductase subunit beta [Nitratiruptor sp. SB155-2] gi|151421661|dbj|BAF69165.1| ribonucleoside-diphosphate reductase, beta subunit [Nitratiruptor sp. SB155-2] Length = 341 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 100/317 (31%), Positives = 170/317 (53%), Gaps = 15/317 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 +L +KY WA+ + N W P EV M D +K LTD E+L + L Sbjct: 32 ELNKIKYQWAYNLWEMMLANTWFPKEVDMTQDARDYKL---LTDAEKLAYDKVLAQLIFM 88 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 +SL NN++ + +++ PE L+RQAFEEA+HS ++ ++ S+ + E++ ++RE Sbjct: 89 DSLQTNNLIDNVNPYITAPEINLILVRQAFEEALHSQSYAVMVDSISQNTDEIYELWRED 148 Query: 153 PSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + K ++ A Y + ++PS D+ ++ +F ++ EG++FY+GF + +L Sbjct: 149 LQLKQKNDYIAHVYEELAANPS--------DENIVKAMFANQIL-EGIYFYSGFTYMYTL 199 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 R+ KM+G A+ ++I RDE HL ++IN +K E P L+TKE M A L Sbjct: 200 ARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINTVKKERPELFTKELIDDVYKMFEGAVDL 259 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E ++ +GL EQY++++A+ R ++GLEP++ E+P W+ + Sbjct: 260 ETSWGKYITQGQILGLTDEIIEQYIKYLADDRLKRVGLEPMYN-VEHPIKWVDDFSKFND 318 Query: 332 EK-NFFETRVTEYQQGA 347 +K NFFE VT Y +G+ Sbjct: 319 QKTNFFEGNVTNYSKGS 335 >gi|152993970|ref|YP_001359691.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurovum sp. NBC37-1] gi|151425831|dbj|BAF73334.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp. NBC37-1] Length = 339 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 100/317 (31%), Positives = 168/317 (52%), Gaps = 15/317 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 +L +KY WA+ + NN W P EV M D+ +K LTD E+ + L Sbjct: 30 ELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDVNDYKR---LTDAEKQAYDKVLAQLIFM 86 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 +SL NNI+ + ++ PE L+RQAFEEA+HS ++ ++ S+ + E++ ++R Sbjct: 87 DSLQTNNIIDNLNPFITAPEVNLILVRQAFEEALHSQSYAVMVDSISTNSEEIYELWRRD 146 Query: 153 PSITAKANWALQYTQTLS-SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + +K + + + LS +P+ D+ ++ +F ++ EG++FY+GF + +L Sbjct: 147 MKLKSKNDAIAKVYEELSENPT--------DENIVKAMFANQIL-EGIYFYSGFTYLYTL 197 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 R++KM+G A+ ++I RDE HL ++IN K E P L+TKE M +A L Sbjct: 198 ARSDKMLGTAQMIRFIQRDEVTHLLLFQNMINATKRERPELFTKELIDDVYQMFRDAVKL 257 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E + +GL EQY+Q++A++R H +GLE ++ E+P W+ Sbjct: 258 ECEWGTYITQGQILGLTNEIIEQYIQYLADKRLHAVGLEKIYN-VEHPIKWVDNFSQFND 316 Query: 332 EK-NFFETRVTEYQQGA 347 +K NFFE VT Y +G+ Sbjct: 317 QKTNFFEGNVTNYSKGS 333 >gi|115378653|ref|ZP_01465803.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella aurantiaca DW4/3-1] gi|115364319|gb|EAU63404.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella aurantiaca DW4/3-1] Length = 288 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 152/277 (54%), Gaps = 12/277 (4%) Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 +TD ER +I R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H Q+ Sbjct: 1 MTDAERHLIHRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALH---VQF 57 Query: 134 IITSLGL------DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +T L D + F +PSI KA + L++ ++ + T++ + FL Sbjct: 58 YLTLLDTYVPDPADRAKAFAAIDNIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLL 116 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 +L F EG++F+ FA + L + G+A ++ RDES H+ F + I + Sbjct: 117 NLICFAGCIEGLFFFAAFAYVYFLRSKGLLHGLAAGTNWVFRDESTHMAFAFEAIRVARQ 176 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P L+ Q M+ EA E +A + + G GL+ QY++++A++R + Sbjct: 177 EEPDLFDARMQADVVAMMREAVECETLFAQDLLSGGVAGLSVQEMRQYLEYVADQRLTML 236 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 GL P+F+ +N P+M ++ D+++ NFFE RV+ YQ Sbjct: 237 GLAPVFR-VKNSLPFM-DLQDVQELTNFFERRVSAYQ 271 >gi|307719930|ref|YP_003891070.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM 16294] gi|306978023|gb|ADN08058.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM 16294] Length = 340 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 100/333 (30%), Positives = 175/333 (52%), Gaps = 16/333 (4%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 NV+D+++ + + +L +KY WA+ + NN W P EV M D+ +K LTD Sbjct: 14 NVNDRKVFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRDVNDYKQ---LTD 70 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ + L +SL NN++ + +++ PE L+RQ+FEEA+HS ++ ++ Sbjct: 71 AEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTAPEINLILVRQSFEEALHSQSYAVMVD 130 Query: 137 SLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 S+ + E+++++R + K + A Y + +P+ D F++ F ++ Sbjct: 131 SISTNSEEIYDLWRRDMMLKHKNDTIAAVYQELAKNPT--------DSNFVKACFANQIL 182 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GF I +L R+ KM+G A+ ++I RDE HL ++IN ++ E P L+T Sbjct: 183 -EGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINTLRKERPDLFTD 241 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 E + M EA LE + +GL EQY+Q++A+ R + +G + L+ Sbjct: 242 ELRADVIEMFKEAVKLETEWGKYITQGQILGLTDEIVEQYIQYLADDRLNSVGFDKLYNV 301 Query: 316 TENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 + NP W+ + +K NFFE VT Y +G+ Sbjct: 302 S-NPIKWVDDFAKFNDQKTNFFEGTVTNYSKGS 333 >gi|242309209|ref|ZP_04808364.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pullorum MIT 98-5489] gi|239524250|gb|EEQ64116.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pullorum MIT 98-5489] Length = 341 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/333 (28%), Positives = 183/333 (54%), Gaps = 15/333 (4%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +V+++++ + + +L +KY WA+ + N W P EV M D + +GLT Sbjct: 15 SVNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKRDYA--DGLTP 72 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E++ R L +SL NN++ + ++++PE L+RQAFEEA+HS ++ ++ Sbjct: 73 EEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVE 132 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 S+ + E++ M+R + +K ++ + Y Q ++P+ ++ ++ +F ++ Sbjct: 133 SISANTDEIYEMWRTDMQLRSKNDYIAEVYEQLATNPT--------ERNIIKAMFANQIL 184 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GF +L R+ KM+G A+ ++I RDE HL ++IN K E+P +TK Sbjct: 185 -EGIYFYSGFTFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMINSTKKESPEFFTK 243 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + +++ M EA +EIA+ +GL A ++Y++++A+ R ++GL P+ Sbjct: 244 DLEEEVLEMFREAVKVEIAWGEYITQGQILGLTAEIIQEYIKYLADDRLRRVGL-PVLYN 302 Query: 316 TENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 ++P W+ ++K NFFE VT Y +G+ Sbjct: 303 AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 335 >gi|224438210|ref|ZP_03659145.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter cinaedi CCUG 18818] gi|313144656|ref|ZP_07806849.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter cinaedi CCUG 18818] gi|313129687|gb|EFR47304.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter cinaedi CCUG 18818] Length = 348 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 95/336 (28%), Positives = 178/336 (52%), Gaps = 13/336 (3%) Query: 14 EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E + +V D+++ + + L +KY WA+ + + N W P EV + D + + Sbjct: 18 ESKESVKDRKIFGGNPTSMFDLNKIKYQWAYNLWKTMLANTWFPEEVNLNGDKRDYA--D 75 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLT E+ R L +SL NN++ + ++++PE L+RQAFEEA+HS ++ Sbjct: 76 GLTAQEKAGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYA 135 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 ++ S+ + E++ M+R + +K + +++ G + +Q L+ LF Sbjct: 136 VMVESISANTDEIYEMWRVDMQLRSKND-------HIANVYIELGKQPTEQNLLKALFAN 188 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 ++ EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL +IN ++ E PHL Sbjct: 189 QIL-EGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLLVFQQMINALRKEQPHL 247 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 +T +++ M +A +E + +GL A +Y+Q++A+ R +GL + Sbjct: 248 FTPSLEEEVIAMFQKAVEIESVWGEYITQGQILGLTAEIIREYIQYLADMRLRAVGLREI 307 Query: 313 FKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 + +++NP W+ + +K NFFE +VT Y +G+ Sbjct: 308 Y-HSKNPIKWVEQFASFNDQKTNFFEAKVTNYSKGS 342 >gi|167957419|ref|ZP_02544493.1| ribonucleotide-diphosphate reductase subunit beta [candidate division TM7 single-cell isolate TM7c] Length = 277 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 141/262 (53%), Gaps = 3/262 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 QL P++Y WA+ Y A N W P EV + DLA +K LT+DE+ +K + + + Sbjct: 19 QLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFKK---LTEDEKNALKTVISYLNPN 75 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 E L+ ++ IY ++ EC YL +Q +EEA H TF+YII + + E++ Sbjct: 76 ELLINKSLAFGIYPCVNAAECHLYLSKQMWEEANHFMTFEYIIETFPFNREEIYAAGWGK 135 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 S+ KA + +Y + T + ++F+++L + +V EG+WFY+GF +S Sbjct: 136 KSLADKAAFQTKYVTRMMEERPDVTTTEGKKDFVRNLVAYNIVLEGIWFYSGFMVGMSFR 195 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R N + + ++ RDE+LHL FGI+++ I ENP L EF + R ++ +A LE Sbjct: 196 RRNLLRNVGTLLDWVTRDENLHLEFGINLLLTILHENPDLQDPEFADEIRNLILQAVELE 255 Query: 273 IAYAHETMPKGFVGLNAPSCEQ 294 AY + +P G +GLNA Q Sbjct: 256 EAYNRDMLPNGILGLNADYVNQ 277 >gi|237752265|ref|ZP_04582745.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter winghamensis ATCC BAA-430] gi|229376507|gb|EEO26598.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter winghamensis ATCC BAA-430] Length = 343 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/332 (28%), Positives = 176/332 (53%), Gaps = 13/332 (3%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +V+++R+ + + +L +KY WA+ + N W P EV M D + +GLT Sbjct: 17 SVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKRDYS--DGLTP 74 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E++ R L +SL NN++ + ++++PE L+RQAFEEA+HS ++ ++ Sbjct: 75 EEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVE 134 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 S+ + E++ M+R + +K ++ + LS + L+ +F ++ Sbjct: 135 SISANTDEIYEMWRTDIQLKSKNDYIANVYEELS-------VNPTESILLKAMFANQIL- 186 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++FY+GFA +L R+ KM+G A+ ++I RDE HL ++IN ++ E PHL+TK+ Sbjct: 187 EGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMINSLRKEMPHLFTKD 246 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++ M EA +E + +GL + +Y++++A+ R ++GL L+ Sbjct: 247 LIEEVLEMFREAVRVESTWGEYITQGQILGLTSEIIHEYIRYLADNRLTRVGLPALYN-A 305 Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 +P W+ ++K NFFE VT Y +G+ Sbjct: 306 RHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 337 >gi|313683656|ref|YP_004061394.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994] gi|313156516|gb|ADR35194.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994] Length = 339 Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 98/333 (29%), Positives = 180/333 (54%), Gaps = 16/333 (4%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +V+D+++ + + +L +KY WA+ + NN W P EV M D +K LT+ Sbjct: 14 HVNDRQIFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRDAVDYKY---LTE 70 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ + L +SL NN++ + +++ PE L+RQ+FEEA+HS ++ ++ Sbjct: 71 MEKTAYDKALSQLIFMDSLQTNNLMDNVNPYVTAPEINLILVRQSFEEALHSQSYAVMVD 130 Query: 137 SLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 S+ + E+++++R+ + K + A +Y + + PS + F++ F ++ Sbjct: 131 SISQNSEEIYDLWRKDMMLKTKNDSIAARYDELANDPS--------ESAFVKACFANQIL 182 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GF I +L R+ KM+G A+ ++I RDE HL ++IN ++ E L+T+ Sbjct: 183 -EGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNIINTLRRERSDLFTE 241 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 E ++ M +A LE A+ +GL EQY+Q++A++R +GL+PL+ Sbjct: 242 ELIEEVYDMFRKAVELETAWGKYITQGQILGLTNEIVEQYIQYLADQRLTAVGLKPLYNV 301 Query: 316 TENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 + +P W+ + +K NFFE VT Y +G+ Sbjct: 302 S-HPIKWVDDFSKFNDQKTNFFEGTVTNYSKGS 333 >gi|110802082|ref|YP_699620.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium perfringens SM101] gi|110682583|gb|ABG85953.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens SM101] Length = 344 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 105/339 (30%), Positives = 175/339 (51%), Gaps = 19/339 (5%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + K+M+N + ++N +KY W E Y A NN W+P E+ + DL +K LT Sbjct: 15 IETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKDYKK---LT 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +E+ + L F +S+ N+ I +++ E L QAF+EAVHS ++ Y++ Sbjct: 72 KEEKAAYDKILSFLIFLDSIQTANLG-NINSYITASEVNLCLTIQAFQEAVHSQSYSYML 130 Query: 136 TSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVF 192 S+ E E+ +++ + + + Y L S + F++ + Sbjct: 131 DSICSPEERNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSI--------ENFIKSVMAN 182 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 Y++ EG++FY+GF +L R KM G A++ +YI RDE+ HL +I ++K E P + Sbjct: 183 YIL-EGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKEEIPEV 241 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 +TKE +++ R M+ EIA+ H + G+N E+Y+++I N R IGLEPL Sbjct: 242 FTKELKEELREMMRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRAKAIGLEPL 301 Query: 313 FK-YTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 F+ Y ENP PW+ D + K +FFE + T Y + L Sbjct: 302 FEGYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGAL 340 >gi|18311342|ref|NP_563276.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium perfringens str. 13] gi|110801267|ref|YP_697050.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium perfringens ATCC 13124] gi|168205189|ref|ZP_02631194.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens E str. JGS1987] gi|168210336|ref|ZP_02635961.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens B str. ATCC 3626] gi|168213271|ref|ZP_02638896.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens CPE str. F4969] gi|168216675|ref|ZP_02642300.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens NCTC 8239] gi|169347055|ref|ZP_02865997.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens C str. JGS1495] gi|182625797|ref|ZP_02953564.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens D str. JGS1721] gi|18146026|dbj|BAB82066.1| ribonucleoside-diphosphate reductase beta subunit [Clostridium perfringens str. 13] gi|110675914|gb|ABG84901.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens ATCC 13124] gi|169296738|gb|EDS78867.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens C str. JGS1495] gi|170663363|gb|EDT16046.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens E str. JGS1987] gi|170711548|gb|EDT23730.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens B str. ATCC 3626] gi|170715235|gb|EDT27417.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens CPE str. F4969] gi|177908953|gb|EDT71440.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens D str. JGS1721] gi|182381151|gb|EDT78630.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens NCTC 8239] Length = 344 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 106/337 (31%), Positives = 172/337 (51%), Gaps = 15/337 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + K+M+N + ++N +KY W E Y A NN W+P E+ + DL +K LT Sbjct: 15 IETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKDYKK---LT 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +E+ + L F +S+ N+ I +++ E L QAF+EAVHS ++ Y++ Sbjct: 72 KEEKTAYDKILSFLIFLDSIQTANLG-NINSYITASEVNLCLTIQAFQEAVHSQSYSYML 130 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE-FLQDLFVFYV 194 S+ E R K + L + +D+ E F++ + Y+ Sbjct: 131 DSICSPEE------RNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSMENFIKSVMANYI 184 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY+GF +L R KM G A++ +YI RDE+ HL +I ++K E P ++T Sbjct: 185 L-EGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKEEIPEVFT 243 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 KE +++ R M+ EIA+ H + G+N E+Y+++I N R IGLEPLF+ Sbjct: 244 KELKEELREMVRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRVKAIGLEPLFE 303 Query: 315 -YTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 Y ENP PW+ D + K +FFE + T Y + L Sbjct: 304 GYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGAL 340 >gi|163753569|ref|ZP_02160692.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia algicida OT-1] gi|161325783|gb|EDP97109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia algicida OT-1] Length = 326 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 102/329 (31%), Positives = 163/329 (49%), Gaps = 28/329 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+K+ WE Y + + W E+ + DL W +K L DDER IK Sbjct: 8 ILQENKDRFVIFPIKHADIWEWYKKSEASFWTAEEIDLHQDLTDWTTK--LNDDERYFIK 65 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E + + Q E +HS T+ +I + DE Sbjct: 66 HILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEA 125 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF P+I KA+WALQ+ + SPSF + L F V EG++ Sbjct: 126 EKDKLFKAIENFPAIKKKADWALQW---IESPSFA-----------ERLIAFAAV-EGIF 170 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE +H +F + + N HL K +++ Sbjct: 171 FSGAFCSIYWLKKRGIMPGLTFSNELISRDEGVHCDFA------VHLHNNHLVNKVPKER 224 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R ++ +A +E + E++P +G+NA QY++F+ +R ++G E + + NPF Sbjct: 225 IRAIIVDALNIEREFITESLPVSLIGMNAKLMTQYLEFVTDRLLQELGCEKEYNVS-NPF 283 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +M ++I L+ + NFFE RV+EYQ+ L Sbjct: 284 DFM-DMISLQGKTNFFEKRVSEYQKAGVL 311 >gi|148259750|ref|YP_001233877.1| ribonucleotide-diphosphate reductase subunit beta [Acidiphilium cryptum JF-5] gi|146401431|gb|ABQ29958.1| Ribonucleoside-diphosphate reductase [Acidiphilium cryptum JF-5] Length = 338 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 99/327 (30%), Positives = 163/327 (49%), Gaps = 33/327 (10%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E +L+ HW+P EVP+ DD+ W LT ER ++ + FF ++ Sbjct: 31 PFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWH--RNLTPGERNLLTQIFRFFTQADVE 88 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + +++ ++G+ E E F Y+E Sbjct: 89 V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVEYSAFLKYKE 146 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + Y Q S D+ E + L F EG+ + FA +L+ Sbjct: 147 MKD-------KYDYMQEFSV--------DSKHEIAKTLAAFGAFTEGLQLFASFAILLNF 191 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK-----SRTMLH 266 R NKM G+ + + +RDESLH N I + ENP +WT+E +++ + + H Sbjct: 192 PRFNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIWTEELRREIYLCCATIVDH 251 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 E +++A+ + GL A ++Y+++IA+RR Q+GL PLF +NP PW+ E+ Sbjct: 252 EDAFIDLAFEFGAVE----GLTAEEVKRYIRYIADRRLLQLGLNPLFHVDKNPLPWLDEM 307 Query: 327 IDLKKEKNFFETRVTEYQQGAEL-KWD 352 ++ + NFFE R TEY + + WD Sbjct: 308 LNAVEHTNFFENRATEYSKASTAGSWD 334 >gi|326403282|ref|YP_004283363.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium multivorum AIU301] gi|325050143|dbj|BAJ80481.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium multivorum AIU301] Length = 338 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 99/327 (30%), Positives = 163/327 (49%), Gaps = 33/327 (10%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E +L+ HW+P EVP+ DD+ W LT ER ++ + FF ++ Sbjct: 31 PFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWH--RNLTPGERNLLTQIFRFFTQADVE 88 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + +++ ++G+ E E F Y+E Sbjct: 89 V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVEYSAFLKYKE 146 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + Y Q S D+ E + L F EG+ + FA +L+ Sbjct: 147 MKD-------KYDYMQEFSV--------DSKHEIAKTLAAFGAFTEGLQLFASFAILLNF 191 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK-----SRTMLH 266 R NKM G+ + + +RDESLH N I + ENP +WT+E +++ + + H Sbjct: 192 PRFNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIWTEELRREIYLCCATIVDH 251 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 E +++A+ + GL A ++Y+++IA+RR Q+GL PLF +NP PW+ E+ Sbjct: 252 EDAFIDLAFEFGAVE----GLTAEEVKRYIRYIADRRLLQLGLNPLFHVDKNPLPWLDEM 307 Query: 327 IDLKKEKNFFETRVTEYQQGAEL-KWD 352 ++ + NFFE R TEY + + WD Sbjct: 308 LNAVEHTNFFENRATEYSKASTAGSWD 334 >gi|32266105|ref|NP_860137.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter hepaticus ATCC 51449] gi|32262154|gb|AAP77203.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC 51449] Length = 349 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 97/337 (28%), Positives = 177/337 (52%), Gaps = 15/337 (4%) Query: 14 EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E +V D+++ + + L +KY WA+ + N W P EV M D + Sbjct: 19 ESTESVADRKIFGGNPTSMFDLNKIKYQWAYNLWKVMLANTWFPEEVNMTPDKRDYNG-- 76 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLT E+L R L +SL NN++ + ++++PE L+RQA+EEA+HS ++ Sbjct: 77 GLTAQEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEEALHSQSYA 136 Query: 133 YIITSLGLDEGELFNMYREVPSITAK-ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 ++ S+ + E++NM+R + +K N A Y + +P+ +Q L+ +F Sbjct: 137 VMVESISANTDEIYNMWRVDMQLRSKNDNIANVYIELAKNPN--------EQNLLKAMFA 188 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 ++ EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++I+ ++ E H Sbjct: 189 NQIL-EGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMISSLRKEQGH 247 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L+T +++ M +A +E + +GL + +Y+Q++A+ R +GL Sbjct: 248 LFTPSLEEEVVEMFKKAVEIESQWGEYITQGQILGLTSEIIREYIQYLADARLKAVGLPQ 307 Query: 312 LFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 L+ ++NP W+ + +K NFFE +VT Y +G+ Sbjct: 308 LYG-SKNPIKWVDQFASFNDQKTNFFEAKVTNYSKGS 343 >gi|167947199|ref|ZP_02534273.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 241 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 79/197 (40%), Positives = 116/197 (58%), Gaps = 2/197 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K VN DDKR++N +DVNQL P KY WAWE +L+A NHW P ++ M D+ + K L Sbjct: 46 KPVNPDDKRVVNGLTDVNQLAPFKYPWAWEYFLNANKNHWTPLDINMAQDVHDYHHK--L 103 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T +ER + + L + +S+ L NI LA+ +S PE + Y RQ +EEA+H+ T+Q+ Sbjct: 104 TLEERHIYENVLSYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTYQHC 163 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 I ++GLD+ E++N YR VP I K A + ++ +D + FL F Sbjct: 164 IETIGLDQVEIYNRYRVVPEINGKIQIANRRLHSILRSDVDLSNRDELENFLMAYLFFAG 223 Query: 195 VFEGMWFYTGFAQILSL 211 +FEG+WFY GF+ I +L Sbjct: 224 IFEGVWFYNGFSPIFAL 240 >gi|156087150|ref|XP_001610982.1| ribonucleoside-diphosphate reductase small subunit [Babesia bovis T2Bo] gi|154798235|gb|EDO07414.1| ribonucleoside-diphosphate reductase small subunit, putative [Babesia bovis] Length = 339 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 98/321 (30%), Positives = 161/321 (50%), Gaps = 29/321 (9%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N L P+KY WE Y A + W E+ + DL W + LT+ E IK L FFA+ Sbjct: 31 NGLYPIKYPDFWEWYKKAQASFWTSEEIDLSSDLKDWGT---LTEGEHHFIKNVLAFFAA 87 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 S+ +V N+ L + + PE + + Q E +HS T+ +I DE E ++R Sbjct: 88 SDGIVLENLALRFLKDVKLPEAKFFYCFQITVENIHSETYSLLIEQYIRDEAEKDRLFRA 147 Query: 152 VPSITA---KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 + +I A KA WA ++ D++ + V Y EG++F F I Sbjct: 148 IETIDAVRDKAIWAAKWMN--------------DEKSFAERIVAYAAVEGIFFSGSFCAI 193 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 L + M G+ + I RDE LH +FG + +++K + P + + ++ EA Sbjct: 194 FWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYSKLKHKLP-------AECVQQIIKEA 246 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +E + +++P +G+N+ QY++F+A+R +G+ P++K T+NPF WM E+I Sbjct: 247 VAVERVFVCDSLPTDLIGMNSMLMAQYIEFVADRLLQALGVPPVYK-TKNPFEWM-ELIS 304 Query: 329 LKKEKNFFETRVTEYQQGAEL 349 ++ + NFFE RV EYQ+ L Sbjct: 305 VQGKTNFFEKRVGEYQKSGIL 325 >gi|161760549|ref|NP_906664.2| ribonucleotide-diphosphate reductase subunit beta [Wolinella succinogenes DSM 1740] Length = 341 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 96/332 (28%), Positives = 176/332 (53%), Gaps = 15/332 (4%) Query: 19 VDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+++++ + + +L +KY WA+ + N W P EV M D + GLT Sbjct: 16 VNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTPDKRDYNG--GLTPA 73 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+L R L +SL NN++ + ++++PE L+RQAFEEA+HS ++ ++ S Sbjct: 74 EKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYAVMVES 133 Query: 138 LGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 + + E++ M+R + +K + A Y + +P+ D L+ +F ++ Sbjct: 134 ISANTDEIYEMWRVDMQLKSKNDHIAGVYEELAKNPT--------DSAMLKAMFANQIL- 184 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++FY GF+ +L R+ KM+G A+ ++I RDE HL ++IN +K E P L+TK Sbjct: 185 EGIYFYAGFSFFYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINALKKERPDLFTKS 244 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +++ M +A +E A+ +GL + +Y+Q++A+ R ++G+ P+ Sbjct: 245 LEEEVVEMFRKAVAVESAWGDYITQGQILGLTSEIIHEYIQYLADDRLKRVGM-PILYNA 303 Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 ++P W+ + ++K NFFE VT Y +G+ Sbjct: 304 KHPIKWVDQFSSFNEQKTNFFEGNVTNYAKGS 335 >gi|291276761|ref|YP_003516533.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter mustelae 12198] gi|290963955|emb|CBG39794.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter mustelae 12198] Length = 344 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 92/333 (27%), Positives = 180/333 (54%), Gaps = 15/333 (4%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +V+D+++ + + L +KY WA++ + + N W P EV M +D + N LT Sbjct: 19 SVNDRKIFGGNPTSMFDLNKIKYQWAYDLWKTMLANTWFPEEVSMNEDKRDYN--NLLTA 76 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+L R L +SL NN++ + ++++PE L+RQA+EEA+HS ++ ++ Sbjct: 77 QEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEEALHSQSYAVMVE 136 Query: 137 SLGLDEGELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 S+ + E+++M+R + +K ++ A Y + +P+ ++ ++ +F ++ Sbjct: 137 SISANTDEIYDMWRVDMQLKSKNDYIANVYMKLAQNPT--------ERNIVKAMFANQIL 188 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GFA +L KM+G ++ ++I RDE HL ++I +K E P L+ K Sbjct: 189 -EGIYFYSGFAFFYALASTGKMLGSSQMIRFIQRDEVTHLILFQNMIRTLKKERPDLFDK 247 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + +++ M A +E A+ +GL QY+Q++A++R ++G+ L+ Sbjct: 248 DLEEEIVEMFRRAVEIEAAWGEYITQGQILGLTGEVIHQYIQYLADQRLSKVGMPKLYN- 306 Query: 316 TENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 E+P W+ + +++ NFFE +VT Y +G+ Sbjct: 307 VEHPIKWVEQYASFNEQRTNFFEAKVTNYAKGS 339 >gi|296421312|ref|XP_002840209.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636423|emb|CAZ84400.1| unnamed protein product [Tuber melanosporum] Length = 397 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 101/317 (31%), Positives = 155/317 (48%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W+ E+ + D+ W + L DDER I L FFA+S+ Sbjct: 79 LFPIKYHEIWQMYKKAEASFWVAEEIDLSKDMHDWSDR--LNDDERYFISHVLAFFAASD 136 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E VHS T+ +I + D + LF+ Sbjct: 137 GIVNENLVQRFSNEVQIPEARCFYGFQIMMENVHSETYSLLIDTYIKDPKQRTYLFDAID 196 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ + D + F Q L F V EG++F FA I Sbjct: 197 TIPCIKKKADWAIRWIE------------DRNSTFAQRLVAFAAV-EGIFFSGSFASIFW 243 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G++ + I RDE LH +F + N HL + QQ + ++ EA Sbjct: 244 LKKRGLMPGLSFSNELISRDEGLHTDFACLLFN-------HLNNRPSQQAVQDIIVEAVG 296 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N+ +QY++F+A+R +G P F NPF +M E I L Sbjct: 297 IEQEFLTEALPCALLGMNSKLMKQYIEFVADRLLLSLG-NPKFYNATNPFDFM-ESISLA 354 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 355 GKTNFFEKRVGDYQKAG 371 >gi|9632043|ref|NP_048832.1| hypothetical protein PBCV1_A476R [Paramecium bursaria Chlorella virus 1] gi|1620147|gb|AAC96843.1| contains ribonucleotide reductase (RR) signature; similar to tobacco RR small subunit, corresponds to Swiss-Prot Accession Number P49730 [Paramecium bursaria Chlorella virus 1] Length = 324 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 98/319 (30%), Positives = 160/319 (50%), Gaps = 28/319 (8%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++Y W+ Y A W EVP+ D+ W+ K L DDER IK LGFFA S+ Sbjct: 19 FPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWREK--LNDDERHFIKHILGFFAGSDG 76 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYRE 151 +V N+ ++ PE RQ+ Q F E++HS + +I +L DE ELF+ Sbjct: 77 IVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDALISDEQERNELFDAIEN 136 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 +P++ KA WA ++ + S + V +V EG+ F F I L Sbjct: 137 IPAVHNKAKWAQKWLEPGKS--------------FAERLVAWVCVEGILFSGSFCAIFWL 182 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 M G+ ++I RDE LH FG + ++++ + P + + ++ EA Sbjct: 183 RNKGVMPGLGLSNEFISRDEGLHQQFGELMYSKLQNKLPF-------ETVKQIITEAVEN 235 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E + + +P +G+NA QY++F+A+R +G E ++ ++NPF +M E+I L+ Sbjct: 236 EKEFICDAIPCRLIGMNAELMGQYIEFVADRIFVALGYEKVYN-SKNPFAFM-ELISLQG 293 Query: 332 EKNFFETRVTEYQQGAELK 350 + NFFE RV++YQ+ +K Sbjct: 294 KTNFFEKRVSDYQRPGVMK 312 >gi|156058956|ref|XP_001595401.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980] gi|154701277|gb|EDO01016.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980 UF-70] Length = 407 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 105/345 (30%), Positives = 167/345 (48%), Gaps = 35/345 (10%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ P +A E + + R + L P+KY W+ Y A + W E+ + DL Sbjct: 63 GIKPEEADEPLLQENPNRFV--------LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDL 114 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W N L DDER I L FFA+S+ +V N+V + PE R + Q E Sbjct: 115 HDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMEN 172 Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +HS T+ +I + ++ + LFN +P I KA+WA+++ Q D + Sbjct: 173 IHSETYSLLIDTYIKEQAQKTYLFNAIDTIPCIKKKADWAVKWIQ------------DKN 220 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 F Q L F V EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 221 STFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGLHTDFACLLF 279 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 + HL + +Q + ++ EA +E + E +P +G+N+ +QY++F+A+R Sbjct: 280 S-------HLKHRPSKQAVQDVITEAVEIEQEFLTEALPCALLGMNSTLMKQYIEFVADR 332 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +G + ++K + NPF +M E I L + NFFE RV +YQ+ Sbjct: 333 LLVTLGNDKVYK-SANPFDFM-ENISLAGKTNFFEKRVGDYQKAG 375 >gi|171687074|ref|XP_001908478.1| hypothetical protein [Podospora anserina S mat+] gi|170943498|emb|CAP69151.1| unnamed protein product [Podospora anserina S mat+] Length = 409 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 104/344 (30%), Positives = 165/344 (47%), Gaps = 27/344 (7%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + A E + + D+ +L L P+KY W+ Y A + W E+ + DL Sbjct: 61 IKTVAAPEPKQELLDEPLLTENPQRFVLFPIKYHEVWQMYKKAEASFWTAEEIDLSKDLH 120 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W +K L DDE+ I L FFA+S+ +V N+V + PE R + Q E + Sbjct: 121 DWSNK--LNDDEKFFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGFQIMMENI 178 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS T+ +I + + + LFN +P I KA+WAL++ D D Sbjct: 179 HSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWIS------------DKDA 226 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 F Q L F V EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 227 SFAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS 285 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 HL + +Q ++ +A +E + E +P +G+N+ +QY++F+A+R Sbjct: 286 -------HLNNRPSKQLVEDIIRDAVTIEQEFLTEALPCALLGMNSNLMKQYIEFVADRL 338 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +G + +++ T NPF +M E I L + NFFE RV EYQ+ Sbjct: 339 LVALGNDKIYRST-NPFDFM-ENISLGGKTNFFEKRVGEYQKAG 380 >gi|315452596|ref|YP_004072866.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis ATCC 49179] gi|315131648|emb|CBY82276.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis ATCC 49179] Length = 347 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/319 (29%), Positives = 167/319 (52%), Gaps = 16/319 (5%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D+NQ+ KY WA + + + +N W P EV M D + L+ E++ R L Sbjct: 38 DLNQI---KYQWAHKIWKTMLHNTWFPEEVSMHGDKTHYLK---LSTQEKIGYDRALAQL 91 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +SL NN++ I +++PE L+RQA+EEA+HSH++ ++ S+ + E++ M+ Sbjct: 92 IFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEEALHSHSYAVMVESISANSDEIYEMW 151 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 R ++ K + Q L+ ++ L+ L V + EG++FY+GF+ Sbjct: 152 RTDEALKNKNDCVAQVYMDLAHTQ-------TERNLLKAL-VANQILEGIYFYSGFSFFY 203 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 +L R+ KM+G A+ ++I RDE HL +I+ +K E P L++K+ ++ M EA Sbjct: 204 ALARSGKMLGSAQMIRFIQRDEVTHLALFQSMIHTLKKERPDLFSKDLVEEILEMFKEAV 263 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 LE + + LN + Y++++A+ R H IGL P +T++P W+ + Sbjct: 264 DLESTWGRVITQGEILDLNPVTLRAYIEYLADTRLHAIGL-PKIYHTKHPMRWVDQFSSF 322 Query: 330 KKEK-NFFETRVTEYQQGA 347 ++ NFFE RV+ Y +G+ Sbjct: 323 NSQRSNFFEARVSNYSKGS 341 >gi|258542157|ref|YP_003187590.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter pasteurianus IFO 3283-01] gi|256633235|dbj|BAH99210.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636294|dbj|BAI02263.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639347|dbj|BAI05309.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642403|dbj|BAI08358.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645458|dbj|BAI11406.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648511|dbj|BAI14452.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651564|dbj|BAI17498.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654555|dbj|BAI20482.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-12] Length = 339 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 98/321 (30%), Positives = 162/321 (50%), Gaps = 32/321 (9%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ +L+ HW+P EVP+ DD+ W L + E+ ++ + FF S+ Sbjct: 27 PFRYPWAYDAWLTQQRLHWLPEEVPLADDVKDWH--RVLNEGEQHLVTQIFRFFTQSDVE 84 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + Y++ +LG+ E E F Y+E Sbjct: 85 V-NNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSYLLDTLGMPETEYSAFLKYKE 142 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + Y QT T D+ E + L F EG+ + FA +L+ Sbjct: 143 MKD-------KYDYMQTF--------TVDSKHEIAKTLAAFGAFTEGLQLFASFAILLNF 187 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTML-H 266 R NK+ G+ + + +RDE+LH I + ENP LWT++ + + RT++ H Sbjct: 188 PRFNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFIQENPELWTEQLRTELTDICRTIVEH 247 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 E +++A+ + GLNA + Y+ FIA+RR Q+GLEP++ T NP PW+ ++ Sbjct: 248 EEAFIDLAFEMGAVE----GLNAEQVKTYIHFIADRRLTQLGLEPIYNTTTNPLPWLDDM 303 Query: 327 IDLKKEKNFFETRVTEYQQGA 347 ++ + NFFE R TEY + + Sbjct: 304 LNAVEHTNFFENRATEYSRAS 324 >gi|302904131|ref|XP_003049009.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256729943|gb|EEU43296.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 389 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/319 (31%), Positives = 157/319 (49%), Gaps = 27/319 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N LT DE+ I L FFA+S+ Sbjct: 69 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLTSDEQFFISHILAFFAASD 126 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LFN Sbjct: 127 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKEPSQRTYLFNAIE 186 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D D F Q L F V EG++F FA I Sbjct: 187 TIPCIRKKADWAIRWIQ------------DKDSSFAQRLVAFAAV-EGIFFSGAFASIFW 233 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +Q + ++ +A Sbjct: 234 LKKRGLMPGLTFSNELISRDEGLHTDFAC-------LLHSHLKGRASKQVIQDIITDAVT 286 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+NA +QY++F+A+R +G E ++K + NPF +M E I L Sbjct: 287 IEQEFLTEALPCALLGMNADLMKQYIEFVADRLLVALGNEKVYK-SANPFDFM-ENISLG 344 Query: 331 KEKNFFETRVTEYQQGAEL 349 + NFFE RV +YQ+ L Sbjct: 345 GKTNFFEKRVGDYQKAGVL 363 >gi|289620013|emb|CBI53457.1| unnamed protein product [Sordaria macrospora] Length = 410 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 107/344 (31%), Positives = 166/344 (48%), Gaps = 35/344 (10%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L P +A E + + +R + L P+KY W+ Y A + W E+ + DL Sbjct: 70 LKPEEAAEPLLTENPQRFV--------LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLH 121 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W N LTDDER + L FFA+S+ +V N+V + PE R + Q E + Sbjct: 122 DWN--NRLTDDERFFVSHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENI 179 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS T+ +I + + + LFN +P I KA+WAL++ SS Sbjct: 180 HSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWITDKSST----------- 228 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 F Q L F V EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 229 -FAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS 286 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 HL + +Q + ++ +A +E + E +P +G+NA +QY++F+A+R Sbjct: 287 -------HLNNRPSKQLIQDIIVDAVRIEQEFLTEALPCALLGMNADLMKQYIEFVADRL 339 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +G E +++ T NPF +M E I L + NFFE RV +YQ+ Sbjct: 340 LVALGNEKVYRST-NPFDFM-ENISLGGKTNFFEKRVADYQKAG 381 >gi|329113329|ref|ZP_08242110.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter pomorum DM001] gi|326697154|gb|EGE48814.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter pomorum DM001] Length = 339 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/321 (30%), Positives = 162/321 (50%), Gaps = 32/321 (9%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ +L+ HW+P EVP+ DD+ W L + E+ ++ + FF S+ Sbjct: 27 PFRYPWAYDAWLTQQRLHWLPEEVPLADDVKDWH--RVLNEGEQHLVTQIFRFFTQSDVE 84 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + Y++ +LG+ E E F Y+E Sbjct: 85 V-NNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSYLLDTLGMPETEYSAFLKYKE 142 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + Y QT T D+ E + L F EG+ + FA +L+ Sbjct: 143 MKD-------KYDYMQTF--------TVDSKHEIAKTLAAFGAFTEGLQLFASFAILLNF 187 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTML-H 266 R NK+ G+ + + +RDE+LH I + ENP LWT++ + + RT++ H Sbjct: 188 PRFNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFIQENPELWTEQLRTELTDICRTIVEH 247 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 E +++A+ + GLNA + Y+ FIA+RR Q+GLEP++ T NP PW+ ++ Sbjct: 248 EEAFIDLAFEMGAVE----GLNAEQVKTYIHFIADRRLTQLGLEPIYNTTTNPLPWLDDM 303 Query: 327 IDLKKEKNFFETRVTEYQQGA 347 ++ + NFFE R TEY + + Sbjct: 304 LNAVEHTNFFENRSTEYSRAS 324 >gi|157953769|ref|YP_001498660.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella virus AR158] gi|156068417|gb|ABU44124.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella virus AR158] Length = 324 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 97/319 (30%), Positives = 160/319 (50%), Gaps = 28/319 (8%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++Y W+ Y A W EVP+ D+ W+ K L DDER IK LGFFA S+ Sbjct: 19 FPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWREK--LNDDERHFIKHILGFFAGSDG 76 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYRE 151 +V N+ ++ PE RQ+ Q F E++HS + +I +L DE ELF+ Sbjct: 77 IVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDALISDEQERNELFDAIEN 136 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 +P++ KA WA ++ + S + V +V EG+ F F I L Sbjct: 137 IPAVHNKAKWAQKWLEPGKS--------------FAERLVAWVCVEGILFSGSFCAIFWL 182 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 M G+ ++I RDE LH FG + ++++ + P + + ++ EA Sbjct: 183 RNKGVMPGLGLSNEFISRDEGLHQQFGELMYSKLQNKLPF-------ETVKQIITEAVEN 235 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E + + +P +G+N+ QY++F+A+R +G E ++ ++NPF +M E+I L+ Sbjct: 236 EKEFICDAIPCRLIGMNSELMGQYIEFVADRIFIALGYEKVYN-SKNPFAFM-ELISLQG 293 Query: 332 EKNFFETRVTEYQQGAELK 350 + NFFE RV++YQ+ +K Sbjct: 294 KTNFFEKRVSDYQRPGVMK 312 >gi|46122063|ref|XP_385585.1| hypothetical protein FG05409.1 [Gibberella zeae PH-1] Length = 399 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 102/319 (31%), Positives = 158/319 (49%), Gaps = 27/319 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N LT DE+ I L FFA+S+ Sbjct: 79 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLTSDEQYFISHILAFFAASD 136 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + D + LFN Sbjct: 137 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKDPAQRTYLFNAVD 196 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D + F Q L F V EG++F FA I Sbjct: 197 TIPCIRKKADWAIRWIQ------------DKNSTFAQRLVAFAAV-EGIFFSGAFASIFW 243 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G++ + I RDE LH +F + + HL + +Q + ++ +A Sbjct: 244 LKKRGLMPGLSFSNELISRDEGLHTDFAC-------LLHSHLKGRASKQMIQDIITDAVS 296 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N+ +QY++F+A+R +G E ++K T NPF +M E I L Sbjct: 297 IEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALGNEKVYKST-NPFDFM-ENISLG 354 Query: 331 KEKNFFETRVTEYQQGAEL 349 + NFFE RV +YQ+ L Sbjct: 355 GKTNFFEKRVADYQKAGVL 373 >gi|328771482|gb|EGF81522.1| hypothetical protein BATDEDRAFT_16297 [Batrachochytrium dendrobatidis JAM81] Length = 336 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 104/342 (30%), Positives = 164/342 (47%), Gaps = 27/342 (7%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P++ + V ++ +L + L P+KY W Y A + W EV + D W Sbjct: 2 PLELPSESTLVQNEPILTPDPRRSVLFPIKYPAVWRMYKKAEASFWTAEEVDLSKDTLDW 61 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + + LTDDER I R L FFA+S+ +V N+V + + PE R + Q E +HS Sbjct: 62 EER--LTDDERYFISRVLAFFAASDGIVNENLVERFSQDVHIPEARYFYDFQIMIENIHS 119 Query: 129 HTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 + +I + D E LF+ VP I KA+WAL++ D F Sbjct: 120 EMYSLLIDTYIKDRKERAFLFDAIDTVPCIRKKADWALRWIS------------DKKSSF 167 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 + L F V EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 168 GERLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFTLL 226 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K + ++HEA +E ++ E++P +G+NA +QY++F+A+R Sbjct: 227 N-------NKPTDSVIQQIIHEAVTIEQEFSTESLPVALIGMNANLMKQYIEFVADRLFI 279 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++G+ P NPF +M ++I L+ + NFFE RV EYQ+ Sbjct: 280 ELGM-PKKYGVGNPFDFM-DMISLQGKTNFFEKRVGEYQKSG 319 >gi|154296564|ref|XP_001548712.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana B05.10] gi|150843273|gb|EDN18466.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana B05.10] Length = 407 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 104/345 (30%), Positives = 166/345 (48%), Gaps = 35/345 (10%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ P +A E + + R + L P+KY W+ Y A + W E+ + DL Sbjct: 63 GIKPEEADEPLLQENPNRFV--------LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDL 114 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W + L DDER I L FFA+S+ +V N+V + PE R + Q E Sbjct: 115 HDWNER--LNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMEN 172 Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +HS T+ +I + ++ + LFN +P I KA+WA+++ Q D + Sbjct: 173 IHSETYSLLIDTYIKEQSQKTYLFNAIDTIPCIKKKADWAVKWIQ------------DKN 220 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 F Q L F V EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 221 STFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGLHTDFACLLF 279 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 + HL + +Q + ++ EA +E + E +P +G+N+ +QY++F+A+R Sbjct: 280 S-------HLKHRPSKQAVQDVITEAVEIEQEFLTEALPCALLGMNSNLMKQYIEFVADR 332 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +G + +K + NPF +M E I L + NFFE RV +YQ+ Sbjct: 333 LLLSLGNDKYYK-SANPFDFM-ENISLAGKTNFFEKRVGDYQKAG 375 >gi|160881347|ref|YP_001560315.1| ribonucleoside-diphosphate reductase [Clostridium phytofermentans ISDg] gi|160430013|gb|ABX43576.1| Ribonucleoside-diphosphate reductase [Clostridium phytofermentans ISDg] Length = 342 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 88/320 (27%), Positives = 172/320 (53%), Gaps = 16/320 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA Y + NN W+P E+ +Q+D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWARLIYRTMLNNFWIPEEISLQEDV---KQFPYLTDGERNAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++ + +++++RE Sbjct: 89 SENLP-NISRYITAPEVSSLLNVQAFQEEIHAQSYSYILDTVTNPVTRDRIYDIWREDKY 147 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + + Q S + +D+ F++ +F Y++ EG++FY+GF+ +L R Sbjct: 148 LLERNKFIANIYQRFSD-------EPSDENFVRVVFANYIL-EGIYFYSGFSFFYTLARQ 199 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM + ++YI RDE HL +++ ++++E ++TK +++ R M+ EIA Sbjct: 200 GKMTATSTIFKYINRDEITHLVLFQNIMKELRVEQKEMFTKGLEEELREMMRTGVEHEIA 259 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333 + +G+N +QY+++++N+R +GLE L+ + T++P W+ ++ K Sbjct: 260 WGQYVTDNQILGINNELIDQYIKYLSNQRLRAVGLEILYPEITKHPMEWIESFSNINSTK 319 Query: 334 -NFFETRVTEYQQGAELKWD 352 +FFE +VT Y + A +D Sbjct: 320 TDFFEAKVTNYTKAAVFDFD 339 >gi|58584525|ref|YP_198098.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418841|gb|AAW70856.1| Ribonucleotide reductase, beta subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 331 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 92/314 (29%), Positives = 159/314 (50%), Gaps = 15/314 (4%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK K L + E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKIK--LLNVEKNLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K + L++ ++ K + + L VF EG+ + FA +L+ R Sbjct: 128 MRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + RDE+LH N I++ N EN +W EF++ + LE Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEGLYSACRTIVGLEDE 238 Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V GL+A Y+++IANRR Q+GL+P++ +NP PW+ E+++ + Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYIANRRLMQLGLKPIYDINDNPLPWLDEILNGVEHT 298 Query: 334 NFFETRVTEYQQGA 347 NFFE RVTEY + A Sbjct: 299 NFFENRVTEYSRAA 312 >gi|322693757|gb|EFY85606.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium acridum CQMa 102] Length = 411 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 101/319 (31%), Positives = 156/319 (48%), Gaps = 27/319 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDE+ I L FFA+S+ Sbjct: 90 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDEKYFISHILAFFAASD 147 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LFN Sbjct: 148 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKENAQRTYLFNAID 207 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D + F Q L F V EG++F FA I Sbjct: 208 TIPCIRKKADWAIRWIQ------------DKESTFAQRLVAFAAV-EGIFFSGAFASIFW 254 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +Q ++ +A Sbjct: 255 LKKRGLMPGLTFSNELISRDEGLHTDFAC-------LLHSHLKNRASKQIIHDIITDAVA 307 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N+ +QY++F+A+R +G E ++K T NPF +M E I L Sbjct: 308 IEKEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALGNEKVYK-TSNPFDFM-ENISLG 365 Query: 331 KEKNFFETRVTEYQQGAEL 349 + NFFE RV +YQ+ L Sbjct: 366 GKTNFFEKRVGDYQKAGVL 384 >gi|302409182|ref|XP_003002425.1| ribonucleoside-diphosphate reductase small chain [Verticillium albo-atrum VaMs.102] gi|261358458|gb|EEY20886.1| ribonucleoside-diphosphate reductase small chain [Verticillium albo-atrum VaMs.102] Length = 414 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 102/317 (32%), Positives = 155/317 (48%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W +K + DDE+ I L FFA+S+ Sbjct: 93 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNK--INDDEKYFISHILAFFAASD 150 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LFN Sbjct: 151 GIVNENLVERFSAEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPAQRTYLFNAID 210 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WAL T D F L F VV EG++F FA I Sbjct: 211 TIPCIRKKADWAL------------TWITDKKSTFATRLVAFAVV-EGIFFSGAFASIFW 257 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +Q + ++ +A Sbjct: 258 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPSKQTVQDIVTDAVN 310 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P G +G+NA +QY++F+A+R +G E ++K T NPF +M E I L Sbjct: 311 IEQEFLTEALPCGLLGMNATLMKQYIEFVADRLLVALGNEKVYKAT-NPFDFM-ENISLG 368 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 369 GKTNFFEKRVADYQKAG 385 >gi|322709430|gb|EFZ01006.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium anisopliae ARSEF 23] Length = 414 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 101/319 (31%), Positives = 156/319 (48%), Gaps = 27/319 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDE+ I L FFA+S+ Sbjct: 93 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDEKYFISHILAFFAASD 150 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LFN Sbjct: 151 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKENAQRTYLFNAID 210 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D + F Q L F V EG++F FA I Sbjct: 211 TIPCIRKKADWAIRWIQ------------DKESTFAQRLVAFAAV-EGIFFSGAFASIFW 257 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +Q ++ +A Sbjct: 258 LKKRGLMPGLTFSNELISRDEGLHTDFAC-------LLHSHLKNRASKQVIYDIITDAVA 310 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N+ +QY++F+A+R +G E ++K T NPF +M E I L Sbjct: 311 IEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALGNEKVYK-TSNPFDFM-ENISLG 368 Query: 331 KEKNFFETRVTEYQQGAEL 349 + NFFE RV +YQ+ L Sbjct: 369 GKTNFFEKRVGDYQKAGVL 387 >gi|209966751|ref|YP_002299666.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum centenum SW] gi|209960217|gb|ACJ00854.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodospirillum centenum SW] Length = 322 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 162/322 (50%), Gaps = 23/322 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E +L+ HW+P EVP+ DD+ W+ K LT+ ER ++ + FF ++ Sbjct: 14 PFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWRQK--LTEAERNLLTQIFRFFTQADVE 71 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V NN + Y + P E L + E VH + +++ ++G+ E E F Y+E+ Sbjct: 72 V-NNCYMRHYSRVFQPTEVCMMLAAFSAMETVHIAAYSHLLDTIGMPEIEYSAFLRYKEM 130 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 Y Q + D+ ++ + L VF EG+ + FA +++ Sbjct: 131 KD-------KYDYMQGFNV--------DSLEDIAKTLAVFGAFTEGLQLFASFAILMNFP 175 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NKM G+ + + +RDE+LH I + ENP +WT+ FQ++ E Sbjct: 176 RFNKMKGMGQIVTWSVRDETLHTLSMIKLFRTFVNENPQVWTEAFQRELTVCCETIVHHE 235 Query: 273 IAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ G V G+ A ++Y+++IA+RR Q+GLEP+++ +NP PWM +++ + Sbjct: 236 DAFIDLAFEMGPVEGMTAEDVKRYIRWIADRRLGQLGLEPVYRIEKNPLPWMDAILNGIE 295 Query: 332 EKNFFETRVTEYQQGAEL-KWD 352 NFFE R TEY + A WD Sbjct: 296 HTNFFENRATEYSKAATRGTWD 317 >gi|317014473|gb|ADU81909.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Gambia94/24] Length = 341 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 169/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL ANN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIEMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 ++ +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKIYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|297831106|ref|XP_002883435.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata] gi|297329275|gb|EFH59694.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata] Length = 341 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 99/327 (30%), Positives = 156/327 (47%), Gaps = 29/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L A++ + P++Y WE Y A + W EV + D+ W++ LTD E+ I Sbjct: 21 LLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEA---LTDSEKHFIS 77 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E +HS + ++ + D Sbjct: 78 HVLAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFLKDSK 137 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I+ KA W L + Q S SF V + EG++ Sbjct: 138 EKDRLFNAIETIPCISKKAKWCLDWIQ--SPMSFAVR------------LVAFACVEGIF 183 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ + P +K Sbjct: 184 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLP-------LEK 236 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++HEA +E + + +P +G+N+ QY+QF+A+R +G E +K ENPF Sbjct: 237 VYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADRLLVTLGCERRYK-AENPF 295 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E I L+ + NFFE RV EYQ+ + Sbjct: 296 DWM-EFISLQGKTNFFEKRVGEYQKAS 321 >gi|190570498|ref|YP_001974856.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019257|ref|ZP_03335064.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356770|emb|CAQ54129.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995366|gb|EEB56007.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 329 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 161/314 (51%), Gaps = 15/314 (4%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L++ E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSNVEKNLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K + L++ ++ K + + L VF EG+ + FA +L+ R Sbjct: 128 MRKKYEYMLEFEES---------KKQDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + RDE+LH N I++ N EN +W EF+++ + LE Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEELYSACRTIVELEDE 238 Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V GL+A Y+++IANRR Q+GL+ ++ +NP PW+ E+++ + Sbjct: 239 FISLAFDLGDVEGLSAEEVRNYIRYIANRRLTQLGLKSIYNVKDNPIPWLDEILNGVEHT 298 Query: 334 NFFETRVTEYQQGA 347 NFFE RVTEY + A Sbjct: 299 NFFENRVTEYSRAA 312 >gi|15229476|ref|NP_189000.1| RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate reductase [Arabidopsis thaliana] gi|27735240|sp|P50651|RIR2A_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain A; AltName: Full=Ribonucleoside-diphosphate reductase R2A subunit; Short=AtRNR2; Short=Protein R2at; AltName: Full=Ribonucleotide reductase small subunit A gi|13937232|gb|AAK50108.1|AF372971_1 AT3g23580/MDB19_7 [Arabidopsis thaliana] gi|9294514|dbj|BAB02776.1| ribonucleotide reductase [Arabidopsis thaliana] gi|23505945|gb|AAN28832.1| At3g23580/MDB19_7 [Arabidopsis thaliana] gi|332643258|gb|AEE76779.1| Ribonucleoside-diphosphate reductase small chain A [Arabidopsis thaliana] Length = 341 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 99/327 (30%), Positives = 156/327 (47%), Gaps = 29/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L A++ + P++Y WE Y A + W EV + D+ W++ LTD E+ I Sbjct: 21 LLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEA---LTDSEKHFIS 77 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E +HS + ++ + D Sbjct: 78 HILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFIKDSK 137 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I+ KA W L + Q S SF V + EG++ Sbjct: 138 EKDRLFNAIETIPCISKKAKWCLDWIQ--SPMSFAVR------------LVAFACVEGIF 183 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ + P +K Sbjct: 184 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLPL-------EK 236 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++HEA +E + + +P +G+N+ QY+QF+A+R +G E +K ENPF Sbjct: 237 VYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADRLLVTLGCERTYK-AENPF 295 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E I L+ + NFFE RV EYQ+ + Sbjct: 296 DWM-EFISLQGKTNFFEKRVGEYQKAS 321 >gi|207343947|gb|EDZ71248.1| YJL026Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 399 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 104/327 (31%), Positives = 156/327 (47%), Gaps = 27/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+S+V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDSIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA WAL++ Q DAD F + L F + EG++ Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 295 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K ENPF Sbjct: 296 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 354 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M E I L + NFFE RV++YQ+ Sbjct: 355 DFM-ENISLAGKTNFFEKRVSDYQKAG 380 >gi|15612081|ref|NP_223733.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori J99] gi|11387046|sp|Q9ZKC3|RIR2_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|4155613|gb|AAD06604.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN [Helicobacter pylori J99] gi|307637755|gb|ADN80205.1| Ribonucleotide reductase of classIa beta subunit [Helicobacter pylori 908] gi|325996356|gb|ADZ51761.1| Ribonucleotide reductase of class Ia beta subunit [Helicobacter pylori 2018] gi|325997944|gb|ADZ50152.1| Ribonucleosidase diphosphate reductase beta subunit [Helicobacter pylori 2017] Length = 341 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 169/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL ANN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIEMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 ++ +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|260950985|ref|XP_002619789.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720] gi|238847361|gb|EEQ36825.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720] Length = 419 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/318 (30%), Positives = 152/318 (47%), Gaps = 29/318 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ WK N +TD+ER I R L FFA+S+ Sbjct: 106 LFPIKYNEIWQMYKKAEASFWTAEEIDLSKDINDWK--NRMTDNERFFISRVLAFFAASD 163 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I S D E LFN Sbjct: 164 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDSYIKDPKEADFLFNAIE 223 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WAL++ D+ + V + EG++F FA I Sbjct: 224 NIPCIKKKAEWALRWIAD-------------DEALFAERLVAFAAVEGIFFSGSFASIFW 270 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTKEFQQKSRTMLHEAT 269 L + M G+ + I RDE LH +F + + + NP + K ++ EA Sbjct: 271 LKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHLNNRPNPAIVEK--------IITEAV 322 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E Y + +P +G+N QY++F+A+R +G + ++ T NPF +M E I L Sbjct: 323 TIEKEYFTDALPASLLGMNCDLMCQYVEFVADRLLVALGNKKVYNVT-NPFDFM-ENISL 380 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 381 AGKTNFFEKRVSDYQKAG 398 >gi|210135249|ref|YP_002301688.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori P12] gi|210133217|gb|ACJ08208.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter pylori P12] Length = 341 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 169/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL ANN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 ++ +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|332519182|ref|ZP_08395649.1| Ribonucleoside-diphosphate reductase [Lacinutrix algicola 5H-3-7-4] gi|332045030|gb|EGI81223.1| Ribonucleoside-diphosphate reductase [Lacinutrix algicola 5H-3-7-4] Length = 327 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 99/329 (30%), Positives = 160/329 (48%), Gaps = 28/329 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+++ WE Y + + W E+ + DL W SK LTDDER IK Sbjct: 8 ILQENKDRFVIFPIQHHDLWEWYKKSEASMWTAEEIDLHQDLTDWSSK--LTDDERYFIK 65 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E + + Q E +HS T+ +I + DE Sbjct: 66 HVLAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEK 125 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN P+I KA WAL++ + SPSF + + + EG++ Sbjct: 126 EKAMLFNAIETFPAIKKKAEWALKW---IESPSFA------------ERLIAFAAVEGIF 170 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE +H +F + + HL K +++ Sbjct: 171 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFA------VHLHEHHLINKVPKER 224 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R +L +A +E + E++P +G+N+ QY++F+ + +G E + T NPF Sbjct: 225 IREILVDALNIEREFITESLPVSLIGMNSKLMSQYLEFVTDGLLQDLGCEKEYG-TANPF 283 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +M ++I L+ + NFFE RV+EYQ+ L Sbjct: 284 DFM-DMISLQGKTNFFEKRVSEYQKAGVL 311 >gi|150024561|ref|YP_001295387.1| ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium psychrophilum JIP02/86] gi|149771102|emb|CAL42569.1| Ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium psychrophilum JIP02/86] Length = 325 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 163/322 (50%), Gaps = 28/322 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ WE Y S + W E+ + DL W +K L++DER +K L FFA+S+ Sbjct: 17 IFPIKHHDIWEFYKSMEASFWTAEEIDLSQDLNDWNNK--LSNDERYFVKHILAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR 150 +V N+ + E + + Q E +HS T+ +I + DE ELFN Sbjct: 75 GIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEVEKDELFNALE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 P+I KA+WALQ+ ++ S F + L F V EG++F F I Sbjct: 135 VFPAIKKKADWALQWIESDS--------------FAERLIAFAAV-EGIFFSGAFCSIYW 179 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE +H +F + + N HL K +++ R+++ +A Sbjct: 180 LKKRGLMPGLTFSNELISRDEGVHCDFA------VHLHNHHLVNKVPKERIRSIIVDALN 233 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E++P +G+NA QY++F+A+R ++G + + T NPF +M ++I L+ Sbjct: 234 IEREFITESLPVSLIGMNAVLMTQYLEFVADRLLVELGCDREYN-TANPFDFM-DMISLQ 291 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE +V EYQ+ + D Sbjct: 292 GKTNFFEKKVAEYQKAGVMNTD 313 >gi|296271635|ref|YP_003654266.1| ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM 7299] gi|296095810|gb|ADG91760.1| Ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM 7299] Length = 339 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 99/349 (28%), Positives = 172/349 (49%), Gaps = 18/349 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 MA T +P + + ++ D+R+ D + +KY WA + + N W P EV Sbjct: 1 MARKTIYNP----DSKESLSDRRIFGGNPDGMINFTKMKYQWALNLWDTMEANTWFPREV 56 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 M D +K LT E+ M L +SL NN++ I +++ PE L R Sbjct: 57 QMTGDAKDYKY---LTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITVPEINACLSR 113 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 Q++EEA HS ++ ++ S+ + E+++M++ + K N+ LS Sbjct: 114 QSYEEANHSKSYAVMVESISDNTDEIYDMWKNDTQLREKNNYIAAVYDNLSD-------N 166 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D++ + +F ++ EG++FY GFA I +LG++ KM+G ++ ++I RDE HL Sbjct: 167 ITDEKMVLAMFANQIL-EGLYFYAGFAAIYALGKSGKMLGSSQMIKFIQRDEVTHLLLFQ 225 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 ++IN + E P L+T E + K R M +A LE A+ +G QY+Q++ Sbjct: 226 NMINSTRKERPDLFTPELEVKVRAMFRKAVELEAAWGAYITQGQILGFTDGIITQYIQYL 285 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 A++R +G +P + ++P PW+ ++ NFFE V Y +G+ Sbjct: 286 ADKRLDAVGYKPEYN-VKHPIPWVDGYSSFNDQRTNFFEGNVVNYSKGS 333 >gi|291388369|ref|XP_002710634.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Oryctolagus cuniculus] Length = 339 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 103/333 (30%), Positives = 163/333 (48%), Gaps = 28/333 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N D++ +L S + P++Y W+ Y A + W EV + DL W N LT D Sbjct: 16 NEDEEPLLKKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NRLTSD 72 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+V + + PE R + Q E VHS + +I + Sbjct: 73 EKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDT 132 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D + LFN +P + KA+WAL++ S T G + V + Sbjct: 133 YIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----------VVAFA 179 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + +L Sbjct: 180 AVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ-------YLVN 232 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G +F+ Sbjct: 233 KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLMELGFSKVFQ 292 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 293 -AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 323 >gi|150863757|ref|XP_001382334.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis CBS 6054] gi|149385013|gb|ABN64305.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis CBS 6054] Length = 417 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 104/327 (31%), Positives = 157/327 (48%), Gaps = 29/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M N R V L P+KY W+ Y A + W E+ + D+ W N L D+ER I Sbjct: 95 MENTRRFV--LFPIKYNEVWQMYKKAEASFWTAEEIDLSKDITDWN--NRLNDNERFFIS 150 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I S D Sbjct: 151 RILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDSYIKDPK 210 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA+WAL++ D D F + L F V EG++ Sbjct: 211 EADFLFNAIDNIPCIRKKADWALRWIS------------DDDALFGERLVAFAAV-EGIF 257 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F FA I L + M G+ + I RDE LH +F + + HL + + Sbjct: 258 FSGSFASIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLQNRPDAEI 310 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E + + +P +G+NA QY++F+A+R +G + ++ T NPF Sbjct: 311 VEKIITEAVKIEKEFFTDALPSSLLGMNAELMCQYVEFVADRLLVALGNKKVYNVT-NPF 369 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M E I L + NFFE RV++YQ+ Sbjct: 370 DFM-ENISLAGKTNFFEKRVSDYQKAG 395 >gi|66822029|ref|XP_644369.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] gi|66823381|ref|XP_645045.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] gi|41019487|sp|P42521|RIR2_DICDI RecName: Full=Ribonucleoside-diphosphate reductase small subunit; AltName: Full=Ribonucleotide reductase small subunit gi|29611978|gb|AAB72227.2| ribonucleotide reductase small subunit [Dictyostelium discoideum] gi|60472492|gb|EAL70444.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] gi|60472997|gb|EAL70945.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] Length = 338 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/326 (30%), Positives = 161/326 (49%), Gaps = 30/326 (9%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L P+KY W Y A +HW+ E+ + +D W+ K LTD+ER I Sbjct: 14 ILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEYK--LTDNERHFIS 71 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + D Sbjct: 72 HVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYIKDKQ 131 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + +LFN +P I KA WAL++ D+D F + L F V EG++ Sbjct: 132 TKDKLFNAIETIPCIKKKAEWALRWIN------------DSDS-FAERLVAFAAV-EGIF 177 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTKEFQQ 259 F F I L + M G+ + I RDE LH +F + +++ + +P + K Sbjct: 178 FSGSFCSIFWLKKRGLMQGLTFSNELISRDEGLHCDFACLLYTKLQRKLDPKVIEK---- 233 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319 M+ +A E + E++P +G+N+ S QY++F A+R +G + +F + NP Sbjct: 234 ----MIRDAVECEKEFICESLPVDLIGMNSRSMSQYIEFCADRLVVSLGYKKIFN-SSNP 288 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQ 345 F WM E+I L+++ NFFE +V EY + Sbjct: 289 FEWM-EMISLQRKSNFFEGKVAEYAK 313 >gi|182419335|ref|ZP_02950587.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum 5521] gi|237666940|ref|ZP_04526925.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376666|gb|EDT74238.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum 5521] gi|237658139|gb|EEP55694.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 344 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/337 (29%), Positives = 175/337 (51%), Gaps = 19/337 (5%) Query: 19 VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + KR++N + ++N +KY W + Y NN W+P EV + DL K L D+ Sbjct: 17 ITKKRLINGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEVNLSQDL---KDYQNLLDE 73 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER+ + L F +S+ N+ I +++ E L Q+F+EAVHS ++ Y++ S Sbjct: 74 ERIAYDKILSFLIFLDSIQTANLS-NINNYITASEVNLCLTIQSFQEAVHSQSYSYMLDS 132 Query: 138 LGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + E E+ +++ + + + Y + + +P+ ++ L+ L Y+ Sbjct: 133 ICSPEKRNEILYQWKDDEILLNRNKFIGDLYNEFIDNPT--------EETLLKTLMANYI 184 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++ EN L+T Sbjct: 185 L-EGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQNENAELFT 243 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 +E + + R M+ EI + H + G+N E+Y++++ N+R +I LEPLF+ Sbjct: 244 EEIKNELREMMKTGVEQEILWGHYVIGDKIQGINKKLIEEYIKYLGNKRLKEINLEPLFE 303 Query: 315 -YTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 + NP PW+ + K +FFE R T Y + A L Sbjct: 304 GHDVNPAPWVDRQSNANSVKTDFFEARSTAYAKAATL 340 >gi|255079598|ref|XP_002503379.1| predicted protein [Micromonas sp. RCC299] gi|226518645|gb|ACO64637.1| predicted protein [Micromonas sp. RCC299] Length = 335 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/327 (29%), Positives = 156/327 (47%), Gaps = 29/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L+ D + P+KYG WE Y A + W EV + DD+ W N L +DE+ IK Sbjct: 17 LLDPNDDRFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMVHW---NKLNNDEKHFIK 73 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + + PE R + Q E +HS + +I + D Sbjct: 74 HILAFFAASDGIVLENLGVRFMGEVQFPEARAFYGFQIAIENIHSEMYSLLIDAYVKDAQ 133 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF + +P I KA+WA ++ ++ +F + L F + EG++ Sbjct: 134 EKTYLFQAIQNIPCIAKKADWAFKWIES-------------SADFAERLIAFACI-EGIF 179 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + I K + Sbjct: 180 FSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLYSYIN-------KKPNESV 232 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R ++ EA +E + + +P VG+NA +Y++F+A+ Q+G+ + NPF Sbjct: 233 VRQIVKEAVEIEKEFVCDALPCALVGMNADLMSEYIEFVADHLLGQLGMSKEYN-AANPF 291 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV EYQ+ Sbjct: 292 DWM-ELISLQGKTNFFEKRVGEYQKSG 317 >gi|840719|emb|CAA54549.1| ribonucleotide reductase R2 [Arabidopsis thaliana] Length = 340 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/330 (30%), Positives = 160/330 (48%), Gaps = 36/330 (10%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L A++ + P++Y WE Y A + W EV + D+ W++ LTD E+ I Sbjct: 21 LLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEA---LTDSEKHFIS 77 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 L FFA+S+ +V N+ R L++ PE R + Q E +HS + ++ + Sbjct: 78 HILAFFAASDGIVLENLA----RFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFIK 133 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E LFN +P I+ KA W L + Q S SF V + E Sbjct: 134 DSKEKDRLFNAIETIPCISKKAKWCLDWIQ--SPMSFAVR------------LVAFACAE 179 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F +I+ +++ P Sbjct: 180 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLISLLQLHVP------- 232 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +K ++HEA +E + + +P +G+N+ QY+QF+A+R +G E +K E Sbjct: 233 LEKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADRLLVTLGCERTYK-AE 291 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 NPF WM E I L+ + NFFE RV EYQ+ + Sbjct: 292 NPFDWM-EFISLQGKTNFFEKRVGEYQKAS 320 >gi|308184827|ref|YP_003928960.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori SJM180] gi|308060747|gb|ADO02643.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori SJM180] Length = 341 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 169/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPKLINEVIEMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 +++ +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 VSWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|73974198|ref|XP_539109.2| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible) isoform 2 [Canis familiaris] Length = 351 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 103/337 (30%), Positives = 163/337 (48%), Gaps = 28/337 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E V D++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 24 ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 81 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D + LFN +P + KA+WAL++ + S T G + Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS---TFGER----------V 187 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------- 240 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 +L K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G Sbjct: 241 YLVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVELGFS 300 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +F+ ENPF +M E I L+ + NFFE RV EYQ+ A Sbjct: 301 KVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQRFA 335 >gi|85109237|ref|XP_962820.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa OR74A] gi|30316285|sp|Q9C167|RIR2_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|16273691|gb|AAK14804.2| small subunit of ribonucleotide reductase [Neurospora crassa] gi|28924456|gb|EAA33584.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa OR74A] Length = 410 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 106/344 (30%), Positives = 165/344 (47%), Gaps = 35/344 (10%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L P +A E + + +R + L P+KY W+ Y A + W E+ + DL Sbjct: 70 LKPEEANEPLLTENPQRFV--------LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLH 121 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W N L DDE+ I L FFA+S+ +V N+V + PE R + Q E + Sbjct: 122 DWN--NRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENI 179 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS T+ +I + + + LFN +P I KA+WAL++ SS Sbjct: 180 HSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWITDKSST----------- 228 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 F Q L F V EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 229 -FAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS 286 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 HL + +Q + ++ +A +E + E +P +G+NA +QY++F+A+R Sbjct: 287 -------HLNNRPSKQLIQEIIVDAVRIEQEFLTEALPCALLGMNADLMKQYIEFVADRL 339 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +G E +++ T NPF +M E I L + NFFE RV +YQ+ Sbjct: 340 LVALGNEKIYRST-NPFDFM-ENISLGGKTNFFEKRVGDYQKAG 381 >gi|42520108|ref|NP_966023.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia endosymbiont of Drosophila melanogaster] gi|58696705|ref|ZP_00372253.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58698234|ref|ZP_00373154.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225630036|ref|YP_002726827.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp. wRi] gi|42409845|gb|AAS13957.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|58535261|gb|EAL59340.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58537117|gb|EAL60231.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225592017|gb|ACN95036.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp. wRi] Length = 329 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 159/314 (50%), Gaps = 15/314 (4%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L+ E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K + L++ ++ K + + L VF EG+ + FA +L+ R Sbjct: 128 MRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + RDE+LH N I + N EN +W EF+++ + LE Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELEDE 238 Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V GL+A Y++++ANRR Q+GLE ++ +NP PW+ E+++ + Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEHT 298 Query: 334 NFFETRVTEYQQGA 347 NFFE RVTEY + A Sbjct: 299 NFFENRVTEYSRAA 312 >gi|86132508|ref|ZP_01051102.1| ribonucleoside-diphosphate reductase small chain [Dokdonia donghaensis MED134] gi|85817069|gb|EAQ38253.1| ribonucleoside-diphosphate reductase small chain [Dokdonia donghaensis MED134] Length = 328 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 100/330 (30%), Positives = 163/330 (49%), Gaps = 28/330 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+++ WE Y + + W E+ + DL WK K LTDDER IK Sbjct: 7 ILAENKDRFVIFPIQHDDIWEWYKKSEASFWTAEEIDLHQDLVDWKGK--LTDDERYFIK 64 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E + + Q E +HS T+ +I + DE Sbjct: 65 HILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEV 124 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN P+I KA+WAL++ + SPSF + L F V EG++ Sbjct: 125 EKDKLFNALENFPAIKKKADWALKW---IDSPSFA-----------ERLIAFAAV-EGIF 169 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE +H +F + + N HL K +++ Sbjct: 170 FSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFA------VHLHNHHLVNKVPKER 223 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ A +E + E++P +G+N+ QY++++ +R ++ E ++ T NPF Sbjct: 224 ITEIIVNALDIEREFITESLPVSLIGMNSNLMTQYLEYVTDRLLTELDCEKVYN-TANPF 282 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +M ++I L+ + NFFE RV EYQ+ +K Sbjct: 283 DFM-DMISLQGKTNFFEKRVGEYQKAGVVK 311 >gi|79160106|gb|AAI08038.1| Rrm2b protein [Danio rerio] Length = 349 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 108/347 (31%), Positives = 166/347 (47%), Gaps = 31/347 (8%) Query: 5 TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T ++ Q G K V+ V+D+ +L + P++Y W+ Y A + W EV + Sbjct: 10 TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W +GL +E+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 70 SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E VHS + +I + D E LFN + +P + KA+WALQ+ Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWIS----------- 175 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 D + F + L F V EG++F FA I L R M G+ + I RDE LH NF Sbjct: 176 -DTNSTFGERLVAFAAV-EGIFFSGSFAAIYWLKRRGLMPGLTYSNELISRDEGLHCNFA 233 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + +L K + ++ +A +E + E +P +G+N +QY++F Sbjct: 234 C-------LMYSYLVKKPSVDRVNDIIAKAVSIEQEFLTEALPVNLIGMNCSLMKQYIEF 286 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +A+R +GL P +ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 287 VADRLLTDLGL-PKAYCSENPFDFM-ESISLEGKTNFFEKRVAEYQR 331 >gi|15644992|ref|NP_207162.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori 26695] gi|2500210|sp|P55983|RIR2_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|2313466|gb|AAD07432.1| ribonucleoside diphosphate reductase, beta subunit (nrdB) [Helicobacter pylori 26695] Length = 341 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL ANN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|15826569|pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer Length = 419 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 27/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 98 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 155 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 156 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 215 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA WAL++ Q DAD F + L F + EG++ Sbjct: 216 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 262 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 263 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 315 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K ENPF Sbjct: 316 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 374 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M E I L + NFFE RV++YQ+ Sbjct: 375 DFM-ENISLAGKTNFFEKRVSDYQKAG 400 >gi|321263951|ref|XP_003196693.1| ribonucleotide reductase small subunit [Cryptococcus gattii WM276] gi|317463170|gb|ADV24906.1| Ribonucleotide reductase small subunit, putative [Cryptococcus gattii WM276] Length = 430 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 98/316 (31%), Positives = 153/316 (48%), Gaps = 28/316 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ DL W + +T+ ER I R L FFA+S+ Sbjct: 112 LFPIKYNEIWQAYKRAQASFWTAEELDFGHDLIDWHDR--MTEQERFFILRILAFFAASD 169 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V NIV + E R + Q+ E VHS T+ +I + D E LF Sbjct: 170 GIVGENIVSQFSLEVQIAEARAFYSFQSMIEQVHSETYSLLIETYVRDAQEKDFLFRGME 229 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WAL+Y D+ + V + EG++F FA I Sbjct: 230 NIPCIKQKADWALKYI--------------TDELPFRTRLVAFACVEGIFFSGSFAAIFW 275 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE +H +F + N +K H + + + ++ EA + Sbjct: 276 LKKRGLMPGLTFSNELISRDEGMHTDFACLLYNHLK----HRCSTD---EVHRIVSEALV 328 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QYM+F+A+R +G ++ T NPF WM E+I L+ Sbjct: 329 IEKQFLTDALPCALIGINAHLMCQYMEFVADRLVVDLGYPKIYNAT-NPFDWM-ELISLQ 386 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE+RV+ YQ+ Sbjct: 387 GKANFFESRVSAYQKA 402 >gi|296116311|ref|ZP_06834927.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter hansenii ATCC 23769] gi|295977130|gb|EFG83892.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter hansenii ATCC 23769] Length = 334 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 157/317 (49%), Gaps = 24/317 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ +L+ HW+P EVP+ DD+ W LT+ ER ++ + FF S+ Sbjct: 27 PFRYPWAYDAWLTQQQVHWLPEEVPLADDVKDWH--RSLTESERHLVTQIFRFFTQSDVE 84 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + +++ ++G+ E E F Y+E Sbjct: 85 V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPESEYSAFLKYKE 142 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + Y Q F+ K E + L F EG+ + FA +L+ Sbjct: 143 MKD-------KYDYMQ-----EFSVSNK---YEIARTLAAFGAFTEGLQLFASFAILLNF 187 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 R NK+ G+ + + +RDE+LH + ENP +WT++ Q R + + Sbjct: 188 PRFNKLKGMGQIVSWSVRDETLHCVSMARLFRVFVQENPEIWTQKLQDDIRQICRDIVEH 247 Query: 272 EIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E A+ + G V GL+A ++Y++F+ANRR Q+GL+ L+ NP PW+ E+++ Sbjct: 248 EDAFIDLSFEMGPVEGLDAAQVKRYIRFVANRRLGQLGLDGLYDVATNPLPWVDEMVNAV 307 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE R TEY + A Sbjct: 308 EHANFFENRSTEYSRAA 324 >gi|208434985|ref|YP_002266651.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter pylori G27] gi|208432914|gb|ACI27785.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter pylori G27] Length = 341 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL ANN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQANNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPKLINEVIEMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|50311465|ref|XP_455757.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644893|emb|CAG98465.1| KLLA0F15103p [Kluyveromyces lactis] Length = 401 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 103/318 (32%), Positives = 154/318 (48%), Gaps = 29/318 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY WE Y A + W E+ + DL W N + ++ER I R L FFA+S+ Sbjct: 88 LFPIKYHEIWEAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENERFFISRILAFFAASD 145 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 146 GIVNENLVENFSAEVQAPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKESEFLFNAIE 205 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ Q D D F + L F V EG++F FA I Sbjct: 206 TIPQIKEKAEWAIRWIQ------------DDDALFGERLVAFAAV-EGVFFSGSFAAIFW 252 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTKEFQQKSRTMLHEAT 269 L + M G+ + I RDE LH +F + +K + NP + K ++ EA Sbjct: 253 LKKKGLMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPNPEIVEK--------IITEAV 304 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E Y + +P +G+NA QY++F+A+R +G + F T NPF +M E I L Sbjct: 305 EIEKRYFMDALPVSLLGMNADLMNQYVEFVADRLLVALGNKKYFNVT-NPFDFM-ENISL 362 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 363 AGKTNFFEKRVSDYQKAG 380 >gi|15896521|ref|NP_349870.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium acetobutylicum ATCC 824] gi|15026352|gb|AAK81210.1|AE007823_4 Ribonucleotide reductase beta subunit [Clostridium acetobutylicum ATCC 824] gi|325510679|gb|ADZ22315.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium acetobutylicum EA 2018] Length = 344 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 98/334 (29%), Positives = 173/334 (51%), Gaps = 19/334 (5%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K+++N + ++N +KY W + Y NN W+P E+ + DL K LTD+ER Sbjct: 20 KKIVNGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEINLSQDL---KDYGKLTDNERT 76 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +S+ N+ I +++ E L QAF+EAVHS ++ Y++ ++ Sbjct: 77 AYDKILSFLIFLDSVQTANLG-NINDYITASEVNLCLTIQAFQEAVHSQSYSYMLDTICS 135 Query: 141 DE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 E E+ +++ + ++ + Y + PS D+ FL+ + YV+ E Sbjct: 136 PEKRNEILFQWKDDEVLLSRNKFIGDIYNNFVEEPS--------DENFLKAIMGNYVL-E 186 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++ E P ++T+E Sbjct: 187 GIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQKEEPDMFTEEI 246 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316 +++ + M+ EI + H + G+N E Y++++ NRR IG EP+++ Y Sbjct: 247 KKELKDMVKTGVENEITWGHYVIGDNIQGINKKLIEDYIKYLGNRRLEAIGFEPIYEGYD 306 Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 ENP W+ D K +FFE + T Y + + L Sbjct: 307 ENPALWVDIYADANSVKTDFFEAKSTAYAKASTL 340 >gi|151945057|gb|EDN63308.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae YJM789] gi|190409471|gb|EDV12736.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae RM11-1a] gi|256271075|gb|EEU06176.1| Rnr2p [Saccharomyces cerevisiae JAY291] Length = 399 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 27/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA WAL++ Q DAD F + L F + EG++ Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 295 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K ENPF Sbjct: 296 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 354 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M E I L + NFFE RV++YQ+ Sbjct: 355 DFM-ENISLAGKTNFFEKRVSDYQKAG 380 >gi|55742360|ref|NP_001007164.1| ribonucleoside-diphosphate reductase subunit M2 B [Danio rerio] gi|29561808|emb|CAD87804.1| novel protein similar to vertebrate ribonucleotide reductase M2 B (TP53 inducible) (RRM2B) [Danio rerio] Length = 349 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 107/347 (30%), Positives = 168/347 (48%), Gaps = 31/347 (8%) Query: 5 TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T ++ Q G K V+ V+D+ +L + P++Y W+ Y A + W EV + Sbjct: 10 TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W +GL +E+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 70 SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E VHS + +I + D E LFN + +P + KA+WALQ+ Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWIS----------- 175 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 D + F + L F V EG++F FA I L + M G+ + I RDE LH NF Sbjct: 176 -DTNSTFGERLVAFAAV-EGIFFSGSFAAIYWLKKRGLMPGLTYSNELISRDEGLHCNFA 233 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 +I ++ P + + ++ +A +E + E +P +G+N +QY++F Sbjct: 234 C-LIYSYLVKKPSV------DRVNDIIAKAVSIEQEFLTEALPVNLIGMNCSLMKQYIEF 286 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +A+R +GL P +ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 287 VADRLLTDLGL-PKAYCSENPFDFM-ESISLEGKTNFFEKRVAEYQR 331 >gi|323347997|gb|EGA82256.1| Rnr2p [Saccharomyces cerevisiae Lalvin QA23] Length = 399 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 27/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA WAL++ Q DAD F + L F + EG++ Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 295 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K ENPF Sbjct: 296 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 354 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M E I L + NFFE RV++YQ+ Sbjct: 355 DFM-ENISLAGKTNFFEKRVSDYQKAG 380 >gi|323308423|gb|EGA61668.1| Rnr2p [Saccharomyces cerevisiae FostersO] Length = 399 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 27/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA WAL++ Q DAD F + L F + EG++ Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 295 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K ENPF Sbjct: 296 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 354 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M E I L + NFFE RV++YQ+ Sbjct: 355 DFM-ENISLAGKTNFFEKRVSDYQKAG 380 >gi|290771185|emb|CAY80753.2| Rnr2p [Saccharomyces cerevisiae EC1118] Length = 399 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 27/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA WAL++ Q DAD F + L F + EG++ Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 295 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K ENPF Sbjct: 296 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 354 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M E I L + NFFE RV++YQ+ Sbjct: 355 DFM-ENISLAGKTNFFEKRVSDYQKAG 380 >gi|109947017|ref|YP_664245.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter acinonychis str. Sheeba] gi|109714238|emb|CAJ99246.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter acinonychis str. Sheeba] Length = 341 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLIDEVIEMFKKAVKIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 ++ +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKIYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|6322434|ref|NP_012508.1| Rnr2p [Saccharomyces cerevisiae S288c] gi|1172946|sp|P09938|RIR2_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 1; AltName: Full=Ribonucleotide reductase R2 subunit 1; AltName: Full=Ribonucleotide reductase small subunit 1 gi|52695523|pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|52695524|pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|52695525|pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|52695526|pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|172450|gb|AAA34988.1| ribonucleoside diphosphate reductase small subunit [Saccharomyces cerevisiae] gi|1008142|emb|CAA89317.1| RNR2 [Saccharomyces cerevisiae] gi|285812874|tpg|DAA08772.1| TPA: Rnr2p [Saccharomyces cerevisiae S288c] Length = 399 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 103/327 (31%), Positives = 155/327 (47%), Gaps = 27/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA WAL++ Q DAD F + L F + EG++ Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 295 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K ENPF Sbjct: 296 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 354 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M E I L + NFFE RV++YQ+ Sbjct: 355 DFM-ENISLAGKTNFFEKRVSDYQKAG 380 >gi|187932511|ref|YP_001884520.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium botulinum B str. Eklund 17B] gi|187720664|gb|ACD21885.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum B str. Eklund 17B] Length = 344 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 102/335 (30%), Positives = 175/335 (52%), Gaps = 21/335 (6%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KR++N + ++N +KY WA + Y NN W+P E+ + DL +K L DER Sbjct: 20 KRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLKDYKK---LLPDERT 76 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +S+ N+ I +++ E L Q+F+EAVHS ++ Y++ S+ Sbjct: 77 AYDKILSFLIFLDSIQTANLS-NINSYITASEINLCLTIQSFQEAVHSQSYSYMLDSICS 135 Query: 141 DE--GELFNMYREVPSITAKANWALQ--YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 E E+ +++ I K N + Y + +++P+ + ++ L Y++ Sbjct: 136 PEERNEILYQWKD-DEILLKRNKFIGDLYNEFINNPN--------EYNLIKTLMANYIL- 185 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++ ENP +T + Sbjct: 186 EGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQSENPESFTAD 245 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315 + + R M+H EI + H + G+N E Y++++ N+R +IGLEPLF Y Sbjct: 246 LKNELREMMHIGVENEILWGHYVIGDKIQGINKKLIEDYIKYLGNKRLKEIGLEPLFSGY 305 Query: 316 TENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 ENP W+ V + K +FFE + T Y + + L Sbjct: 306 EENPATWVDVVANSNSVKTDFFEAKSTAYAKVSTL 340 >gi|155122339|gb|ABT14207.1| hypothetical protein MT325_M653L [Paramecium bursaria chlorella virus MT325] Length = 326 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 101/314 (32%), Positives = 157/314 (50%), Gaps = 28/314 (8%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P+KY + Y A + W EVP+ D+A W+ K L DDER IK LGFFA S+ Sbjct: 21 FPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRDK--LNDDERHFIKTILGFFAGSDG 78 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V NI +++P R + Q F E++HS + ++ +L D+ E LF+ Sbjct: 79 MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAERNSLFDAIET 138 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 +P++ KA WA ++ D+ F + L V +V EG+ F F I L Sbjct: 139 IPAVGKKAAWAQKFLSQ-------------DKSFAERL-VAWVCVEGLLFSGSFCAIFWL 184 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 M G+ ++I RDE LH FG + + K+EN K + + ++ EA Sbjct: 185 RNRGVMPGLGLSNEFISRDEGLHQQFGELLYS--KLEN-----KLSLAQVKAIVEEAVAN 237 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E + E +P +G+N+ QY++F+A+R +G + T NPF +M E+I L+ Sbjct: 238 EKEFICEAIPCRMIGMNSELMGQYLEFVADRIFVALGHPKQYNAT-NPFDFM-ELISLEG 295 Query: 332 EKNFFETRVTEYQQ 345 + NFFE RV+EYQ+ Sbjct: 296 KSNFFERRVSEYQR 309 >gi|118443949|ref|YP_878438.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium novyi NT] gi|118134405|gb|ABK61449.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium novyi NT] Length = 342 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/320 (28%), Positives = 168/320 (52%), Gaps = 16/320 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA E Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYNWANELYRTMLNNFWIPEEISLNEDV---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ I R+++ PE L Q F+E +H+ ++ YI+ ++ + ++++ +RE + Sbjct: 89 SENLP-NISRYITAPEVSSLLNVQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDKN 147 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + + Q+ + T + FL+ + Y++ EG++FY+GF+ +L R Sbjct: 148 LLERNKFIAGIYQSFNENPTT-------ENFLRTIMANYIL-EGIYFYSGFSFFYTLARQ 199 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM + ++YI RDE HL ++I ++K ENP ++T+ ++ R M+ EI Sbjct: 200 GKMTATSTIFKYINRDEITHLILFQNIIKELKNENPDIFTESIMEEFRMMMKMGVEHEIK 259 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333 + +G+N E+Y+++++N R + IGLE L+ + TE+P W+ L K Sbjct: 260 WGQYVTNNEILGINDNLIEKYIKYLSNLRLNAIGLEVLYPEITEHPMEWIENFSKLNNTK 319 Query: 334 -NFFETRVTEYQQGAELKWD 352 +FFE +VT Y + A +D Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339 >gi|256421019|ref|YP_003121672.1| ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM 2588] gi|256035927|gb|ACU59471.1| Ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM 2588] Length = 323 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 97/334 (29%), Positives = 162/334 (48%), Gaps = 30/334 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +N++++ +L D LLP+ Y WEKY + W E+ + D+ W N L D Sbjct: 1 MNLENELLLKENKDRFVLLPINYPKVWEKYKQHEASFWTAEEIDLSADMKDW---NNLND 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 ER I L FFA+S+ +V N+ + + PE R + Q E +HS T+ +I Sbjct: 58 GERHFITHVLAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLID 117 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + D E LF+ VP++T KA WAL++ + + F + L F Sbjct: 118 TYVKDPVEKDRLFHAIETVPAVTKKAKWALRWIE--------------NGNFAERLVAFA 163 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 V EG++F F I L + M G+ + I RDE LH F + ++ P Sbjct: 164 AV-EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLYGMLENRLP--- 219 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +++ T++ +A +E + + +P +G+N+ +Y++F+A+R ++G +F Sbjct: 220 ----EEQVHTIIRDAVAIEKEFITDALPVALIGMNSKLMSEYIEFVADRWLSELGYTKIF 275 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 T NPF +M E+I L+ + NFFE RV +YQ+ Sbjct: 276 N-TANPFDFM-EMISLQGKTNFFEKRVGDYQKAG 307 >gi|155370749|ref|YP_001426283.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella virus FR483] gi|155124069|gb|ABT15936.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella virus FR483] Length = 348 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 101/314 (32%), Positives = 157/314 (50%), Gaps = 28/314 (8%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P+KY + Y A + W EVP+ D+A W+ K L DDER IK LGFFA S+ Sbjct: 43 FPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRDK--LNDDERHFIKTILGFFAGSDG 100 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V NI +++P R + Q F E++HS + ++ +L D+ E LF+ Sbjct: 101 MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAERNSLFDAIET 160 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 +P++ KA WA ++ D+ F + L V +V EG+ F F I L Sbjct: 161 IPAVGKKAAWAQKFLSQ-------------DKSFAERL-VAWVCVEGLLFSGSFCAIFWL 206 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 M G+ ++I RDE LH FG + + K+EN K + + ++ EA Sbjct: 207 RNRGVMPGLGLSNEFISRDEGLHQQFGELLYS--KLEN-----KLSLAQVKAIVEEAVAN 259 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E + E +P +G+N+ QY++F+A+R +G + T NPF +M E+I L+ Sbjct: 260 EKEFICEAIPCRMIGMNSELMGQYLEFVADRIFVALGHPKQYNAT-NPFDFM-ELISLEG 317 Query: 332 EKNFFETRVTEYQQ 345 + NFFE RV+EYQ+ Sbjct: 318 KSNFFERRVSEYQR 331 >gi|225677302|ref|ZP_03788281.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590665|gb|EEH11913.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 329 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 158/314 (50%), Gaps = 15/314 (4%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L+ E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K + L++ ++ K + + L VF EG+ + FA +L+ R Sbjct: 128 MRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + RDE+LH N I + N EN +W EF+++ + LE Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDDEFKEELYSACRTIVELEDE 238 Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V GL+A Y+ ++ANRR Q+GLE ++ +NP PW+ E+++ + Sbjct: 239 FIKLAFDFGDVEGLSAEEVRNYIHYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEHT 298 Query: 334 NFFETRVTEYQQGA 347 NFFE RVTEY + A Sbjct: 299 NFFENRVTEYSRAA 312 >gi|254455551|ref|ZP_05068980.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207082553|gb|EDZ59979.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 335 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 95/320 (29%), Positives = 160/320 (50%), Gaps = 30/320 (9%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y W ++ +L+ HW+P EVP+ DD+ W+ L+ E+ ++ + FF ++ Sbjct: 28 PFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLSQSEKNLLTQIFRFFTQADVE 85 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V NN L Y + P E + A E VH + +++ ++G+ E E F Y+E+ Sbjct: 86 V-NNCYLRHYTTVFKPTEVLMMMTAFAAMETVHVAAYSHLLDTIGMPESEYSAFMKYKEM 144 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 Y Q F +K ++ + + VF EG+ + FA +L+ Sbjct: 145 KD-------KYDYMQ-----DFNVNSK---EDIAKTVAVFSAFTEGLQLFASFAILLNFP 189 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTML-HE 267 R NKM G+ + + +RDE+LH N I + + ENP +WT KE + RT++ HE Sbjct: 190 RHNKMKGMGQIVTWSVRDETLHCNSMIRIFKEFINENPEIWTPKLKKELYEACRTIIAHE 249 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 +++A+ M GL A + Y++FI NRR Q+GLEP++ +NP W+ ++ Sbjct: 250 DAFIDLAFEMGPME----GLTAQEVKDYIRFIGNRRLTQLGLEPIYDVDKNPLGWLDTML 305 Query: 328 DLKKEKNFFETRVTEYQQGA 347 + + NFFE R TEY + + Sbjct: 306 NAVEHMNFFEGRATEYSKAS 325 >gi|317012862|gb|ADU83470.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Lithuania75] Length = 341 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPKLINEVIEMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 ++ +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|146298285|ref|YP_001192876.1| ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae UW101] gi|146152703|gb|ABQ03557.1| Ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae UW101] Length = 325 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 97/322 (30%), Positives = 159/322 (49%), Gaps = 28/322 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ WE Y + W E+ + DL W +K L DDER IK L FFA+S+ Sbjct: 17 IFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNNK--LNDDERYFIKHILAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYR 150 +V N+ + E + + Q E +HS T+ +I + DE ELFN Sbjct: 75 GIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEAEKTELFNALE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 P+I K WAL++ ++ S F + L F V EG++F F I Sbjct: 135 VFPAIAKKGEWALKWIESDS--------------FAERLIAFAAV-EGIFFSGAFCSIYW 179 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE +H +F + + N HL K +++ + ++ +A Sbjct: 180 LKKRGLMPGLTFSNELISRDEGVHCDFA------VHLHNHHLVNKVPKERIKEIIVDALD 233 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E++P +G+NA QY++F+A+R ++G E ++ + NPF +M ++I L+ Sbjct: 234 IERQFVTESLPVSLIGMNAGLMTQYLEFVADRLLVELGCERVYG-SANPFDFM-DMISLQ 291 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE RV EYQ+ + D Sbjct: 292 GKTNFFEKRVAEYQKSGVMNTD 313 >gi|99036000|ref|ZP_01315041.1| hypothetical protein Wendoof_01000112 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 329 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 159/314 (50%), Gaps = 15/314 (4%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L+ E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKTK--LSSVEKNLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 NN + Y ++ P E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K + L++ ++ K + + L VF EG+ + FA +L+ R Sbjct: 128 MRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + RDE+LH N I + N EN +W EF+++ + LE Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELEDE 238 Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V GL+A Y++++ANRR Q+GLE ++ +NP PW+ E+++ + Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYVANRRLMQLGLESIYDVNDNPTPWLDEILNGVEHT 298 Query: 334 NFFETRVTEYQQGA 347 NFFE RVTEY + A Sbjct: 299 NFFENRVTEYSRAA 312 >gi|157952945|ref|YP_001497837.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella virus NY2A] gi|155123172|gb|ABT15040.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella virus NY2A] Length = 324 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 98/314 (31%), Positives = 157/314 (50%), Gaps = 28/314 (8%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++Y W Y A W EVP+ D+A W+ K L +DER IK LGFFA S+ Sbjct: 19 FPIQYHDLWNMYKKAVATFWTTEEVPLNADVADWREK--LNNDERHFIKHILGFFAGSDG 76 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V N+ + PE RQ+ Q F E+VHS + +I +L DE E LF+ Sbjct: 77 IVMENLQTNFGVEVMAPEARQFYAYQTFNESVHSEMYALLIDALISDEQERLDLFDAIET 136 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 +P++ KA WA ++ + ++ F + L V ++ EG+ F F + L Sbjct: 137 IPAVHNKAKWAQKWLK-------------PERSFAERL-VAWICVEGILFSGSFCALFWL 182 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 M G+ ++I RDE LH FG ++ L K + + ++ EA Sbjct: 183 RNKGVMPGLCLSNEFISRDEGLHQQFG-------ELMYSKLQNKLSFETIKQIIMEAVTN 235 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E + + +P +G+NA QY++F+A+R +G E ++ ++NPF +M E+I L+ Sbjct: 236 EKEFICDAIPCSMIGMNADLMNQYIEFVADRIFTALGYEKVYN-SKNPFAFM-ELISLEG 293 Query: 332 EKNFFETRVTEYQQ 345 + NFFE RV++YQ+ Sbjct: 294 KTNFFEKRVSDYQR 307 >gi|58260834|ref|XP_567827.1| ribonucleotide reductase small subunit [Cryptococcus neoformans var. neoformans JEC21] gi|134117207|ref|XP_772830.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255448|gb|EAL18183.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229908|gb|AAW46310.1| ribonucleotide reductase small subunit, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 430 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 99/316 (31%), Positives = 151/316 (47%), Gaps = 28/316 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ DL W + +T+ ER I R L FFA+S+ Sbjct: 112 LFPIKYNEIWQAYKHAQASFWTAEELDFGHDLIDWHDR--MTEQERFFILRILAFFAASD 169 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V NIV + E R + Q+ E VHS T+ +I + D E LF Sbjct: 170 GIVGENIVSQFALEVQIAEARAFYSFQSMIEQVHSETYSLLIETYVRDAQEKDFLFRGMT 229 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WAL+Y D+ + V + EG++F FA I Sbjct: 230 NIPCIKQKADWALKYI--------------TDELPFRTRLVAFACVEGIFFSGSFAAIFW 275 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE +H +F + N +K T E ++ EA + Sbjct: 276 LKKRGLMPGLTFSNELISRDEGMHTDFACLLYNHLK---HRCSTDEVHH----IVSEALV 328 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QYM+F+A+R +G ++ T NPF WM E+I L+ Sbjct: 329 IEKQFLTDALPCALIGINAHLMCQYMEFVADRLVVDLGYPKIYNAT-NPFDWM-ELISLQ 386 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE+RV+ YQ+ Sbjct: 387 GKANFFESRVSAYQKA 402 >gi|317178607|dbj|BAJ56395.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F30] Length = 341 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSTEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 ++ +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|254779643|ref|YP_003057749.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori B38] gi|254001555|emb|CAX29573.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Helicobacter pylori B38] Length = 341 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSTEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIEMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 ++ +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|317011285|gb|ADU85032.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori SouthAfrica7] Length = 341 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EKNILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLIDEVIEMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 ++ +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKIYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|188527870|ref|YP_001910557.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Shi470] gi|188144110|gb|ACD48527.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Shi470] gi|308063873|gb|ADO05760.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Sat464] Length = 341 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EESILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 ++ +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|308183194|ref|YP_003927321.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori PeCan4] gi|308065379|gb|ADO07271.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori PeCan4] Length = 341 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 ++ +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|289177074|ref|NP_001165948.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 2 [Homo sapiens] Length = 423 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 103/346 (29%), Positives = 166/346 (47%), Gaps = 28/346 (8%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 G S E + +++ +L S + P++Y W+ Y A + W EV + D Sbjct: 87 AGRSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKD 146 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E Sbjct: 147 LPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIE 203 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 VHS + +I + D + LFN +P + KA+WAL++ S T G + Sbjct: 204 NVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER-- 258 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 259 --------VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLM 310 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 +L K +++ R ++ +A +E + E +P G +G+N +QY++F+A+ Sbjct: 311 FQ-------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVAD 363 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 R ++G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 364 RLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 407 >gi|297380266|gb|ADI35153.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori v225d] gi|308062365|gb|ADO04253.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Cuz20] gi|317180823|dbj|BAJ58609.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F32] gi|332673890|gb|AEE70707.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter pylori 83] Length = 341 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 ++ +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|86134368|ref|ZP_01052950.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp. MED152] gi|85821231|gb|EAQ42378.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp. MED152] Length = 323 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 94/319 (29%), Positives = 160/319 (50%), Gaps = 32/319 (10%) Query: 34 LLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K AC W E+ + DL W +K LTDDER IK L FFA+ Sbjct: 17 IFPIQHNDLWEWYKKQQAC--FWTAEEIDLHSDLVDWTTK--LTDDERYFIKHILAFFAA 72 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 S+ +V N+ + E + + Q E +HS T+ +I + DE E ++R Sbjct: 73 SDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEVEKDRLFRA 132 Query: 152 V---PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 + P+I KA+WAL++ ++ + F + L F V EG++F F I Sbjct: 133 IEVFPAIKKKADWALKWIES--------------ESFAERLIAFAAV-EGIFFSGAFCSI 177 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 L + + G+ + I RDE +H +F + + N H+ + + + + ++ +A Sbjct: 178 FWLKKRGLLPGLTFSNELISRDEGMHCDFA------VHLHNNHIVNRVPKDRIKEIIVDA 231 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +E + E++P +G+NA QY++F+ +R + G E ++ T NPF +M E+I Sbjct: 232 LDIEREFVTESLPVSLIGMNAKLMTQYLEFVTDRLLLEFGCEKVYDVT-NPFDFM-EMIS 289 Query: 329 LKKEKNFFETRVTEYQQGA 347 L+ + NFFE RV+EYQ+ Sbjct: 290 LEGKTNFFEKRVSEYQKAG 308 >gi|118383611|ref|XP_001024960.1| ribonucleoside-diphosphate reductase, beta subunit family protein [Tetrahymena thermophila] gi|89306727|gb|EAS04715.1| ribonucleoside-diphosphate reductase, beta subunit family protein [Tetrahymena thermophila SB210] Length = 376 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 105/347 (30%), Positives = 167/347 (48%), Gaps = 35/347 (10%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 N+ G +P + E D+ +L + L P+KY WE Y + W E+ + Sbjct: 45 NDEGKAPKEGYE------DEPLLKDNPNRFVLFPIKYNKVWEMYKKELASFWTADEIDLY 98 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W+ LTD+ER IK L FFA+S+ +V N+ + PE R + Q Sbjct: 99 QDLKDWER---LTDNERHFIKYVLAFFAASDGIVLENLAEQFMCEVQIPEARAFYGFQIA 155 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E +HS T+ +I + DE E LF + VP I KA WAL++ Sbjct: 156 MENIHSETYSLLIDTYIKDEVEKDYLFKASQNVPVIHKKAQWALKWINN----------- 204 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + F L F + EG++F F I L + + M G+ + I RDE LH +F Sbjct: 205 --NDNFASRLIAFAAI-EGIFFSGSFCAIFWLKKRSLMPGLTFSNELISRDEGLHTDFAC 261 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + + + N L +E + ++ EA +E + E +P +G+N+ +QY++F+ Sbjct: 262 LLYSML---NKKLTKEEIYE----IITEAVEIEKEFISEALPVELIGMNSNMMKQYLEFV 314 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 A+R +G+ P F ++NPF WM ++I ++ + NFFE RV EYQ+ Sbjct: 315 ADRLLFALGV-PKFYNSKNPFEWM-DMISIQGKTNFFEKRVGEYQKA 359 >gi|219110949|ref|XP_002177226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411761|gb|EEC51689.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 409 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 153/322 (47%), Gaps = 36/322 (11%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P+++ W Y + W E+ + DL W + L D+ER I L FFA + Sbjct: 95 SLFPIEHDDLWGMYKQHVASFWTVDEIDLSADLTDWHER--LNDNERHFISMVLAFFAGA 152 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 + +V N+ R ++ PE R + Q E +H T+ +I S D + LF + Sbjct: 153 DGIVVENLAERFCREVTVPEARAFYGFQMAMEGIHQETYCLLIDSYISDPKDREMLFAAH 212 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 +VPS+ KA WA +Y + D F + L F V EG++F F I Sbjct: 213 TKVPSVEKKARWAQRYIGS-------------DASFAERLVAFAAV-EGIFFSGAFCSIF 258 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH--- 266 L + M G+ + I RDE LH +F L++K ++ S T +H Sbjct: 259 WLKKRGLMPGLTFSNELISRDEGLHCSFAC-----------QLYSKLERKLSETDMHKLI 307 Query: 267 -EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 EA +E + + +P G +G+NA QY++F+A+R H +G L+ ++NPF WM + Sbjct: 308 GEAVEVEKGFVCDALPVGLIGMNASLMSQYVEFVADRLLHDLGYRTLYG-SKNPFDWM-D 365 Query: 326 VIDLKKEKNFFETRVTEYQQGA 347 +I L+ + NFFE RV EYQ+ Sbjct: 366 MISLEGKTNFFEKRVGEYQKSG 387 >gi|281340156|gb|EFB15740.1| hypothetical protein PANDA_011632 [Ailuropoda melanoleuca] Length = 336 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 102/337 (30%), Positives = 162/337 (48%), Gaps = 28/337 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E D++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 9 ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 65 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 66 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 125 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D + LFN +P + KA+WAL++ + S T G + Sbjct: 126 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS---TFGER----------V 172 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 173 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------- 225 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 +L K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G Sbjct: 226 YLVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVELGFS 285 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +F+ ENPF +M E I L+ + NFFE RV EYQ+ A Sbjct: 286 KVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQRFA 320 >gi|315586979|gb|ADU41360.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter pylori 35A] Length = 341 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKVLFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIEMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 ++ +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|261838422|gb|ACX98188.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter pylori 51] Length = 341 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 168/316 (53%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKVLFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 ++ +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ASWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|301774462|ref|XP_002922647.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like [Ailuropoda melanoleuca] Length = 387 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 102/337 (30%), Positives = 162/337 (48%), Gaps = 28/337 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E D++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 60 ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 116 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 117 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 176 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D + LFN +P + KA+WAL++ + S T G + Sbjct: 177 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS---TFGER----------V 223 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 224 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------- 276 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 +L K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G Sbjct: 277 YLVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVELGFS 336 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +F+ ENPF +M E I L+ + NFFE RV EYQ+ A Sbjct: 337 KVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQRFA 371 >gi|237749822|ref|ZP_04580302.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter bilis ATCC 43879] gi|229374572|gb|EEO24963.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter bilis ATCC 43879] Length = 351 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 99/340 (29%), Positives = 173/340 (50%), Gaps = 21/340 (6%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +V+++R+ + + +L +KY WA+ + N W P EV M D + LT Sbjct: 25 SVNERRIFGGNPTAIFELNKIKYQWAYNLLRTMFANTWFPEEVNMNQDKRDYME---LTL 81 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ R L +SL NN+ I +++ PE L+RQAFEE++H+ ++ ++ Sbjct: 82 QEKQGYDRALAQLIFMDSLQTNNLTDNINPYITCPEINMLLVRQAFEESLHAQSYAVMVD 141 Query: 137 SLGLDEGELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKD--ADQEFLQDLFVFY 193 S+ + E++ M+R+ + +K ++ A YT +P+ T K A+Q Sbjct: 142 SISANTDEIYQMWRKDDKLRSKNDYIADVYTDLAKNPTETNLIKAMFANQ---------- 191 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY+GFA +L R+ KM AE ++I RDE HL +I + E P L+ Sbjct: 192 -ILEGIYFYSGFAFFYTLARSGKMQNSAEMIRFIQRDEITHLTIFQQMIISTRKERPDLF 250 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T+ Q + M +A LE ++ +GL A QY++++A++R + P+ Sbjct: 251 TQALQDEVMEMFRQAVDLESSWGEYITQGQILGLTAKIIRQYIEYLADKRLKAVDY-PIL 309 Query: 314 KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 T+NP W+ E ++ ++ NFFE +V Y +G ELK++ Sbjct: 310 YNTQNPIQWVDEQVNFNNQRTNFFEAKVRNYTRG-ELKFE 348 >gi|330994651|ref|ZP_08318574.1| putative ribonucleoside-diphosphate reductase small subunit [Gluconacetobacter sp. SXCC-1] gi|329758292|gb|EGG74813.1| putative ribonucleoside-diphosphate reductase small subunit [Gluconacetobacter sp. SXCC-1] Length = 365 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 161/321 (50%), Gaps = 21/321 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ +L+ HW+P EVP+ DD+ W LT+ ER ++ + FF S+ Sbjct: 57 PFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWHRT--LTESERHLVTQIFRFFTQSDVE 114 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 V NN + Y + P ++ AF E +H + +++ ++G+ E E ++ + + Sbjct: 115 V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YSAFLKYK 171 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ Q++ + + + + L F EG+ + FA +L+ R Sbjct: 172 EMKDKYDYMQQFSVS------------DNYQIARTLAAFGAFTEGLQLFASFAILLNFPR 219 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 NK+ G+ + + +RDESLH + + ENP +WT + R + + E Sbjct: 220 HNKLKGMGQIVSWSVRDESLHCDSMARLFRVFVQENPEIWTDTLRDDIRQICRDIVEHED 279 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 A+ + G V GL+A ++Y++F+ANRR Q+GL+ ++ NP PW+ E+++ + Sbjct: 280 AFIDLSFEMGAVEGLDAGQVKRYIRFVANRRLGQLGLDGIYDIATNPLPWVDEMVNAVEH 339 Query: 333 KNFFETRVTEYQQGAEL-KWD 352 NFFE R TEY + + WD Sbjct: 340 ANFFENRATEYSRASTTGTWD 360 >gi|320585888|gb|EFW98567.1| ribonucleotide reductase small subunit [Grosmannia clavigera kw1407] Length = 378 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 105/343 (30%), Positives = 163/343 (47%), Gaps = 32/343 (9%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NNT +S I+A E ++ +L + L P+KY W+ Y + W E+ + Sbjct: 47 NNTAVSAIKAAEA-----EEPLLKENAQRFVLFPIKYHEIWQMYKKHEASFWTAEEIDLS 101 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W N L DDER + L FFA+S+ +V N+V + PE R + Q Sbjct: 102 KDLHDWN--NRLNDDERFFVSHILAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQIM 159 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E VHS T+ +I + D + LFN +P I KA+WAL++ Sbjct: 160 MENVHSETYSLLIDTYIKDTAQRTHLFNAIDTIPCIRKKADWALKWIS------------ 207 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D + F Q L F V EG++F F+ I L + M G+ + I RDE LH +F Sbjct: 208 DRESTFAQRLVAFAAV-EGIFFSGAFSSIFWLKKRGLMPGLTFSNELISRDEGLHTDFAC 266 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + + HL + +Q ++ +A +E + E +P +G+N+ +QY++F+ Sbjct: 267 LLFS-------HLKNRPSKQLIEEIIVDAVKIEQEFLTEALPCALLGMNSTLMKQYIEFV 319 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 A+R +G + ++ T NPF +M E I L + NFFE RV E Sbjct: 320 ADRLLVALGNDKVYNST-NPFDFM-ENISLGGKTNFFEKRVPE 360 >gi|224000239|ref|XP_002289792.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975000|gb|EED93329.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 335 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 159/318 (50%), Gaps = 28/318 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 L P+ Y W Y + W E+ + DL+ W K L DER I L FFA + Sbjct: 14 SLFPIAYPDLWSMYKQHVASFWTADEIDLSADLSDWHKK--LNPDERHFISMVLAFFAGA 71 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMY 149 + +V N+ R ++ PE R + Q E++H T+ +I + D LF+ + Sbjct: 72 DGIVVENLAERFCREVTVPEARCFYGFQMAMESIHQETYCLLIDTYITDPKVRERLFSAH 131 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 VPS+ KA+WA +Y + +S F + L F V EG++F F I Sbjct: 132 ATVPSVERKASWAQRYIGSKAS-------------FAERLVAFAAV-EGIFFSGSFCAIF 177 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 L + M G+ + I RDE LH +F + +++K+ K Q++ +T+++EA Sbjct: 178 WLKKRGLMPGLTFSNELISRDEGLHCSFACQLYSKLKL-------KLSQEEIQTIINEAV 230 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E ++ + +P +G+N+ QY++F+A+R +G + ++ ++NPF WM ++I L Sbjct: 231 DVEKSFICDALPVSLIGMNSRLMAQYIEFVADRMLTDLGYQAMYG-SKNPFDWM-DMISL 288 Query: 330 KKEKNFFETRVTEYQQGA 347 + + NFFE RV EYQ+ Sbjct: 289 EGKTNFFEKRVGEYQKSG 306 >gi|296536499|ref|ZP_06898590.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas cervicalis ATCC 49957] gi|296263178|gb|EFH09712.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas cervicalis ATCC 49957] Length = 343 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 92/321 (28%), Positives = 160/321 (49%), Gaps = 32/321 (9%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ +++ HW+P EVPM DD+ W+ LT+ ER ++ + FF ++ Sbjct: 21 PFRYPWAYDAWMTQQRVHWLPEEVPMADDVKDWQ--KNLTESERNLLTQIFRFFTQADVE 78 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + +++ ++G+ E E F Y+E Sbjct: 79 V-NNCYMKHYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETEYQAFLKYKE 136 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + Y Q+ S + T E + L F EG+ + FA +++ Sbjct: 137 MKD-------KYDYMQSFSVENKT--------EIAKTLAAFGAFTEGLQLFASFAILMNF 181 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK-----SRTMLH 266 R NKM G+ + + +RDE+LH I + ENP +WT++ + + + H Sbjct: 182 PRFNKMKGMGQIVSWSVRDETLHCLSVIRLFRTFIQENPEIWTEQLKADLVEICTTIVEH 241 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 E +++A+ G G+ +QY++FIA+RR Q+GLEP + +NP PW+ E+ Sbjct: 242 EDAFIDLAFEL----GGVQGMEPEDVKQYIRFIADRRLQQLGLEPHYGTEKNPLPWLDEI 297 Query: 327 IDLKKEKNFFETRVTEYQQGA 347 ++ + NFFE R TEY + + Sbjct: 298 LNAVEHMNFFEGRATEYSKAS 318 >gi|217032591|ref|ZP_03438080.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128] gi|298735909|ref|YP_003728434.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter pylori B8] gi|216945727|gb|EEC24352.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128] gi|298355098|emb|CBI65970.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter pylori B8] Length = 341 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 167/316 (52%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPKLINEVIEMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|207092116|ref|ZP_03239903.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori HPKX_438_AG0C1] Length = 341 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 167/316 (52%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ I +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNINPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|41054952|ref|NP_955770.1| ribonucleoside-diphosphate reductase subunit M2 B [Mus musculus] gi|81885688|sp|Q6PEE3|RIR2B_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B; AltName: Full=TP53-inducible ribonucleotide reductase M2 B; AltName: Full=p53-inducible ribonucleotide reductase small subunit 2-like protein; Short=p53R2 gi|34786000|gb|AAH58103.1| Ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus] gi|74218244|dbj|BAE23760.1| unnamed protein product [Mus musculus] Length = 351 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 102/337 (30%), Positives = 162/337 (48%), Gaps = 28/337 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E V +++ +L S + P++Y W Y A + W EV + DL W N Sbjct: 24 ENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHW---NK 80 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 81 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D + LFN +P + KA+WAL++ S T G + Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----------V 187 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------- 240 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 +L K + + R ++ +A +E + E +P G +G+N +QY++F+A+R ++G Sbjct: 241 YLVNKPSEDRVREIIADAVQIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLGELGFS 300 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 301 KIFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335 >gi|42544136|ref|NP_056528.2| ribonucleoside-diphosphate reductase subunit M2 B isoform 1 [Homo sapiens] gi|114621161|ref|XP_001153916.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B isoform 2 [Pan troglodytes] gi|74727333|sp|Q7LG56|RIR2B_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B; AltName: Full=TP53-inducible ribonucleotide reductase M2 B; AltName: Full=p53-inducible ribonucleotide reductase small subunit 2-like protein; Short=p53R2 gi|261278726|pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2 gi|261278727|pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2 gi|7229086|dbj|BAA92434.1| ribonucleotide reductase [Homo sapiens] gi|7229115|dbj|BAA92493.1| ribonucleotide reductase [Homo sapiens] gi|45259569|dbj|BAD12267.1| p53-inducible ribonucleotide reductase small subunit 2 [Homo sapiens] gi|52545612|emb|CAB70703.2| hypothetical protein [Homo sapiens] gi|63055293|gb|AAY29059.1| ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|80473666|gb|AAI08262.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|109659128|gb|AAI17497.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|119612247|gb|EAW91841.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_b [Homo sapiens] gi|120660296|gb|AAI30629.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|190689549|gb|ACE86549.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic construct] gi|190690911|gb|ACE87230.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic construct] gi|261859014|dbj|BAI46029.1| ribonucleotide reductase M2 B [synthetic construct] gi|313882916|gb|ADR82944.1| ribonucleotide reductase M2 B (TP53 inducible) [synthetic construct] Length = 351 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/343 (29%), Positives = 165/343 (48%), Gaps = 28/343 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S E + +++ +L S + P++Y W+ Y A + W EV + DL Sbjct: 18 SSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPH 77 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VH Sbjct: 78 W---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVH 134 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D + LFN +P + KA+WAL++ S T G + Sbjct: 135 SEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----- 186 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 187 -----VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ- 240 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 +L K +++ R ++ +A +E + E +P G +G+N +QY++F+A+R Sbjct: 241 ------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLL 294 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 295 VELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335 >gi|296227440|ref|XP_002759377.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like isoform 1 [Callithrix jacchus] Length = 351 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/343 (29%), Positives = 164/343 (47%), Gaps = 28/343 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S E + +++ +L S + P++Y W+ Y A + W EV + DL Sbjct: 18 SSADTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPH 77 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VH Sbjct: 78 W---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVH 134 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D + LFN +P + KA+WAL++ S T G + Sbjct: 135 SEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----- 186 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 187 -----VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ- 240 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 +L K +++ R ++ +A +E + E +P G +G+N +QY++F+A+R Sbjct: 241 ------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLL 294 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++G F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 295 VELGFSKFFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335 >gi|315635423|ref|ZP_07890689.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter butzleri JV22] gi|315480181|gb|EFU70848.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter butzleri JV22] Length = 339 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/349 (27%), Positives = 176/349 (50%), Gaps = 18/349 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M T +P + + +++D+R+ SD + +KY WA + + N W P EV Sbjct: 1 MERKTNYNP----DSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREV 56 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 M D +K LT E+ M L +SL NN++ I +++ PE L R Sbjct: 57 QMTGDAKDYKF---LTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLAR 113 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 Q++EEA HS ++ ++ S+ + +++M++ + K + + + LS G Sbjct: 114 QSYEEANHSKSYAVMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLS------GDI 167 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D D++ + LF ++ EG++FY GFA I +LG++ KM+G ++ ++I RDE HL Sbjct: 168 D-DRKIVLALFANQIL-EGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQ 225 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 ++IN ++ E P L+T+E ++ R M +A LE ++ +G QY++++ Sbjct: 226 NMINSVRKERPDLFTQELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYL 285 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 A+RR +G + + ++P PW+ ++ NFFE V Y +G+ Sbjct: 286 ADRRLEAVGYKAEYG-VKHPIPWVDGYASFNDQRTNFFEGNVVNYSKGS 333 >gi|7023557|dbj|BAA92005.1| unnamed protein product [Homo sapiens] Length = 351 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/343 (29%), Positives = 165/343 (48%), Gaps = 28/343 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S E + +++ +L S + P++Y W+ Y A + W EV + DL Sbjct: 18 SSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPH 77 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VH Sbjct: 78 W---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVH 134 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D + LFN +P + KA+WAL++ S T G + Sbjct: 135 SEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----- 186 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 187 -----VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ- 240 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 +L K +++ R ++ +A +E + E +P G +G+N +QY++F+A+R Sbjct: 241 ------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGVNCILMKQYIEFVADRLL 294 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 295 VELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335 >gi|197101489|ref|NP_001125944.1| ribonucleoside-diphosphate reductase subunit M2 B [Pongo abelii] gi|75041724|sp|Q5R9G0|RIR2B_PONAB RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B gi|55729743|emb|CAH91600.1| hypothetical protein [Pongo abelii] Length = 351 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/343 (29%), Positives = 165/343 (48%), Gaps = 28/343 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S E + +++ +L S + P++Y W+ Y A + W EV + DL Sbjct: 18 SSSDTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPH 77 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VH Sbjct: 78 W---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVH 134 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D + LFN +P + KA+WAL++ S T G + Sbjct: 135 SEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----- 186 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 187 -----VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ- 240 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 +L K +++ R ++ +A +E + E +P G +G+N +QY++F+A+R Sbjct: 241 ------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLL 294 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 295 VELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335 >gi|291336894|gb|ADD96423.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426] Length = 147 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 67/145 (46%), Positives = 99/145 (68%) Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 +L+LGR NK+ G+++Q +Y +RDESLH+NFG +IN +K + P +WTK+F++++ + + Sbjct: 2 LLALGRQNKLPGLSDQIRYTLRDESLHINFGTYLINTLKEQYPTIWTKKFEEETIEHIKK 61 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A LEI YAH+ +P+G +GLNA YM +I NRR IGL+ F+ NPFPW+SEV+ Sbjct: 62 AVQLEINYAHDVLPRGILGLNADMFVDYMHYIGNRRLEGIGLDYRFESDTNPFPWLSEVV 121 Query: 328 DLKKEKNFFETRVTEYQQGAELKWD 352 D NFFE +V +YQ L+ D Sbjct: 122 DTGAMTNFFERKVKDYQNSGVLEDD 146 >gi|239502693|ref|ZP_04662003.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB900] Length = 309 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/320 (31%), Positives = 166/320 (51%), Gaps = 19/320 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P+K+ WA NN W P V M DD+A S N L +R M + L F ++ + + Sbjct: 5 PMKHTWAKGILDRMENNTWFPHVVNMADDVA---SYNRLNAADRFMFDKALAFLSNLDGI 61 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 NNI I +H+++PE L RQA+EEA+H ++ II ++ LD ++ + + Sbjct: 62 QFNNINQNIAKHVTSPEVSMCLSRQAWEEALHVKSYATIIETVSLDPMSVYMTFERDGLL 121 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K + L+ ++ L G K + + F V V+ EG++F++GF L Sbjct: 122 AQKNQFILKQSRLL-------GEKFSAEGFALSC-VSNVLLEGVYFFSGFLSFYLLADKG 173 Query: 216 KMVGIAEQYQYIMRD-ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 +M+G A+ +YI RD E HL+ +++ ++ EN ++T+ F K+ + ++ +EI+ Sbjct: 174 EMLGSADMIRYIQRDEEGTHLDLFAHMLDTLRHENKDVFTQSFWNKALEVFLTSSEMEIS 233 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLK-K 331 + + + KG N + E Y++ +AN R QI P Y +NPFPW+ + Sbjct: 234 WG-KYITKGVT--NPKAIEDYIKHLANLRAEQIQ-APFVPYPGVKNPFPWVEQFSKPNTS 289 Query: 332 EKNFFETRVTEYQQGAELKW 351 EKNFFETRVT+Y+ G L W Sbjct: 290 EKNFFETRVTDYKVGGALVW 309 >gi|116191729|ref|XP_001221677.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51] gi|88181495|gb|EAQ88963.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51] Length = 409 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 99/317 (31%), Positives = 155/317 (48%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W +K + DDE+ I L FFA+S+ Sbjct: 88 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNK--INDDEKYFISHILAFFAASD 145 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LFN Sbjct: 146 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPAQRTHLFNAID 205 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P+I KA+WAL++ D F Q L F V EG++F FA I Sbjct: 206 TIPAIRKKADWALRWIT------------DQKSTFAQRLVAFAAV-EGIFFSGAFASIFW 252 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +Q ++ +A Sbjct: 253 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPSKQIIEDIIVDAVR 305 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N+ +QY++F+A+R +G E +++ T NPF +M E I L Sbjct: 306 IEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALGNEKVYRST-NPFDFM-ENISLG 363 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ Sbjct: 364 GKTNFFEKRVGEYQKAG 380 >gi|224046583|ref|XP_002198998.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 362 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/344 (29%), Positives = 167/344 (48%), Gaps = 28/344 (8%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +S A E ++D++ +L + P++Y W+ Y A + W EV + DL Sbjct: 28 MSSSSAAENGSDLDEEPLLRKNHRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP 87 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E V Sbjct: 88 HW---NKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENV 144 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS + +I + D + LFN +P + KA+WAL++ + D + Sbjct: 145 HSEMYSLLIDTYIKDPKKRDFLFNAIETMPCVKKKADWALKWIE------------DRES 192 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 F + + F V EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 193 TFGERVVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFH 251 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 +L + +++ ++ A +E + E +P G +G+N +QY++F+A+R Sbjct: 252 -------YLVNRPSEERVCEIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRL 304 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++G +F ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 305 LMELGFSKVFN-VENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 346 >gi|225561749|gb|EEH10029.1| ribonucleotide reductase M2 B [Ajellomyces capsulatus G186AR] gi|240275354|gb|EER38868.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces capsulatus H143] gi|325091193|gb|EGC44503.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces capsulatus H88] Length = 413 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 103/346 (29%), Positives = 162/346 (46%), Gaps = 35/346 (10%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TG+ ++A E + + R + L PLKY W+ Y A + W E+ + D Sbjct: 70 TGVKALEADEPLLQENPNRFV--------LFPLKYHEIWQMYKKAEASFWTAEEIDLSKD 121 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W N L DDER I L FFA+S+ +V N+V + PE R + Q E Sbjct: 122 LHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMME 179 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 +HS T+ +I + + + LF+ +P I KA+WA+++ + D Sbjct: 180 NIHSETYSLLIDTYIKEPKQRTYLFDAIETIPCIRKKADWAIRWIE------------DK 227 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 D F Q L F V EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 228 DSTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLL 286 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 + HL + + ++ EA +E + + +P +G+NA QY++F+A+ Sbjct: 287 FS-------HLRHRPSPEAVEKIITEAVTIEQEFLSDALPVALLGMNAKLMCQYIEFVAD 339 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 R +G + ++ T NPF +M I L + NFFE RV +YQ+ Sbjct: 340 RLLVALGNKKVYNST-NPFDFMDN-ISLAGKTNFFEKRVGDYQKAG 383 >gi|157736292|ref|YP_001488975.1| ribonucleotide-diphosphate reductase subunit beta [Arcobacter butzleri RM4018] gi|157698146|gb|ABV66306.1| ribonucleoside-diphosphate reductase, beta chain [Arcobacter butzleri RM4018] Length = 339 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 94/336 (27%), Positives = 171/336 (50%), Gaps = 14/336 (4%) Query: 14 EKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + + +++D+R+ SD + +KY WA + + N W P EV M D +K Sbjct: 10 DSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTGDAKDYKF-- 67 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT E+ M L +SL NN++ I +++ PE L RQ++EEA HS ++ Sbjct: 68 -LTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYEEANHSKSYA 126 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 ++ S+ + +++M++ + K + + + LS G D D++ + LF Sbjct: 127 VMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLS------GDID-DRKIVLALFAN 179 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 ++ EG++FY GFA I +LG++ KM+G ++ ++I RDE HL ++IN ++ E P L Sbjct: 180 QIL-EGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQNMINSVRKERPDL 238 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 +T E ++ R M +A LE ++ +G QY++++A+RR +G + Sbjct: 239 FTSELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYLADRRLEAVGYKAE 298 Query: 313 FKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 + ++P PW+ ++ NFFE V Y +G+ Sbjct: 299 YG-VKHPIPWVDGYASFNDQRTNFFEGNVVNYSKGS 333 >gi|239947951|ref|ZP_04699704.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239922227|gb|EER22251.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 327 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 161/319 (50%), Gaps = 28/319 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y + P ++ AF E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ Q+ D ++ L VF EG+ + FA +L+ R Sbjct: 127 EMKDKYDYMQQFGV------------DTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EA 268 NKM G+ + + +RDE+LH N I + IENP +WT+ +++ T++H E Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVIENPEVWTETLRKRIYEACTTIVHFED 234 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +E+A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ Sbjct: 235 AFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLN 290 Query: 329 LKKEKNFFETRVTEYQQGA 347 + NFFE R TEY + A Sbjct: 291 GVEHTNFFENRATEYSKAA 309 >gi|225010999|ref|ZP_03701465.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-3C] gi|225004906|gb|EEG42862.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-3C] Length = 328 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/334 (30%), Positives = 163/334 (48%), Gaps = 32/334 (9%) Query: 24 MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D + P+K+ W W K AC W E+ + +DL W +K L +DER Sbjct: 8 ILTENPDRFVIFPIKHDDLWEWYKKCEAC--FWTAEEIDLSEDLNDWNNK--LNEDERYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 +K L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 VKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E LF P+I KA+WAL++ + SPSF + L F V EG Sbjct: 124 EKEKNKLFKALENFPAIKEKADWALKWIE---SPSFA-----------ERLIAFAAV-EG 168 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H ++ + + N HL K + Sbjct: 169 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYA------VHLHNHHLINKVPK 222 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R +L +A +E + E++P +G+NA QY++F+ +R ++ E + + N Sbjct: 223 ARIREILVDALNIERTFITESLPASLIGMNAKLMTQYLEFVTDRLLVELQCEKEYNVS-N 281 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PF +M ++I L+ + NFFE RV+EYQ+ L D Sbjct: 282 PFDFM-DMISLQGKTNFFEKRVSEYQKAGVLNKD 314 >gi|217034470|ref|ZP_03439882.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10] gi|216943072|gb|EEC22549.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10] gi|317177841|dbj|BAJ55630.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F16] Length = 341 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 167/316 (52%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 SLWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|108563454|ref|YP_627770.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori HPAG1] gi|107837227|gb|ABF85096.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter pylori HPAG1] Length = 341 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 167/316 (52%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKVLFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|149721713|ref|XP_001493623.1| PREDICTED: ribonucleotide reductase M2 B (TP53 inducible) [Equus caballus] Length = 351 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/338 (30%), Positives = 162/338 (47%), Gaps = 28/338 (8%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E +++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 23 NENEAKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---N 79 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 80 KLTSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYS 139 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 +I + D + LFN +P + KA+WALQ+ S T G + Sbjct: 140 LLIDTYIRDPKKREFLFNAIETMPYVKKKADWALQWIADRKS---TFGER---------- 186 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 187 VVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------ 240 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 +L K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G Sbjct: 241 -YLVNKPSEERVREIIVNAVEIEQEFLTEALPVDLIGMNCVLMKQYIEFVADRLLVELGF 299 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 300 SKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335 >gi|261839822|gb|ACX99587.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori 52] Length = 341 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 167/316 (52%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKVLFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|317009697|gb|ADU80277.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori India7] Length = 341 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 167/316 (52%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSVEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + +K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKSKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPKLINEVIEMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|326792202|ref|YP_004310023.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427] gi|326542966|gb|ADZ84825.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427] Length = 342 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/321 (28%), Positives = 168/321 (52%), Gaps = 18/321 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWAQTLYRTMLNNFWIPEEIALNEDV---KGFPFLTDGERHAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ + R+++ PE L QAF+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-HLSRYITAPEVASLLNIQAFQEEIHAQSYSYILDTVTNPVTRDKIYDQWREDEE 147 Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + + + A Y + P+ D+ FL+ + Y++ EG++FY+GF+ +L R Sbjct: 148 LLKRNRFIADIYERFNEEPN--------DKNFLRAIMANYIL-EGIYFYSGFSFFYTLAR 198 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM + ++YI RDE HL ++I ++K ENP L+T+ ++ R M+ EI Sbjct: 199 QGKMTATSTIFKYINRDEITHLVVFQNIIKELKKENPELFTESMIEEFREMMRVGVEHEI 258 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332 A+ +G+N + Y+++++N+R IGLE L+ + T +P W+ L Sbjct: 259 AWGQYVTANEIMGINDQLIDAYIKYLSNQRLKAIGLEELYPEITTHPMAWIDSFSKLNNT 318 Query: 333 K-NFFETRVTEYQQGAELKWD 352 K +FFE +VT Y + A +D Sbjct: 319 KTDFFEAKVTNYTKAAAFDFD 339 >gi|288817346|ref|YP_003431693.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus TK-6] gi|288786745|dbj|BAI68492.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus TK-6] gi|308750953|gb|ADO44436.1| ribonucleotide reductase [Hydrogenobacter thermophilus TK-6] Length = 342 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/336 (28%), Positives = 177/336 (52%), Gaps = 18/336 (5%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLS-ACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K + +++ +L +KY WA++ Y + N W+P E+PM +D ++ L+ E+ Sbjct: 19 KVIFGNPTNIMELNNVKYQWAFDLYKTMGFTNFWVPEEIPMHEDKKQYEK--DLSPYEKR 76 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F + +S N ++ R+++ PE L Q F+EA+HS+++Q+I+ S+ Sbjct: 77 AYEMVLSFLIALDSYQVN-MLKEFARYITAPELVMALTSQEFQEALHSYSYQFILESVVE 135 Query: 141 DE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 + E++N +R+ + + Q Y + + P+ ++ F++ F YV+ E Sbjct: 136 PQVADEIYNYWRQDTVLMERNQVIAQLYNEFIRHPT--------EENFIKATFGNYVL-E 186 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 ++FY+GFA +LGR KM +Q +YI RDE H+ ++I IK ENP L+T E Sbjct: 187 SLYFYSGFAFFYTLGRQGKMRNTVQQIKYINRDELTHVTLFRNIIQTIKQENPELFTPEL 246 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYT 316 ++ AT EI + +G+N ++Y++++AN R Q+G +PL+ + T Sbjct: 247 EKWVYEFFKYATDAEIKWGQYVTQNQILGINNTLIDRYIKYLANLRLTQLGYKPLYPEIT 306 Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKW 351 ENP W+ + + K +FF+ + Y + +ELKW Sbjct: 307 ENPMKWIDQFRTINDTKTDFFQAKPQTYAKRSELKW 342 >gi|255711354|ref|XP_002551960.1| KLTH0B03938p [Lachancea thermotolerans] gi|238933338|emb|CAR21522.1| KLTH0B03938p [Lachancea thermotolerans] Length = 403 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/317 (31%), Positives = 151/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N + ++ER I R + FFA+S+ Sbjct: 90 LFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENERFFISRVIAFFAASD 147 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + +PE + + Q E +HS T+ +I + D E LFN Sbjct: 148 GIVNENLVENFSAEVQSPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKESDFLFNAIE 207 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ Q D D F + L F V EG++F FA I Sbjct: 208 TIPQIKEKAEWAIRWIQ------------DEDALFAERLVAFAAV-EGVFFSGSFAAIFW 254 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL K ++ EA Sbjct: 255 LKKKGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAIIERIITEAVE 307 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E Y + +P +G+NA QY++F+A+R +G + + T NPF +M E I L Sbjct: 308 IEQRYFRDALPVSLLGMNADLMNQYVEFVADRLLVALGNQKFYNVT-NPFDFM-ENISLA 365 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 366 GKTNFFEKRVSDYQKAG 382 >gi|312889900|ref|ZP_07749444.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM 18603] gi|311297432|gb|EFQ74557.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM 18603] Length = 343 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 104/355 (29%), Positives = 166/355 (46%), Gaps = 36/355 (10%) Query: 7 LSPIQAGEKRVNV------DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 LS I K+VN +++ +L D +LP+ Y WE Y + W E+ Sbjct: 4 LSAINTKYKKVNTVTRMSQENELLLRENKDRFVILPINYPQIWEMYKKHEASFWTAEEID 63 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DD+ W N L D ER I L FFA+S+ +V N+ + + PE R + Q Sbjct: 64 LSDDMKDW---NNLNDGERHFISHILAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQ 120 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS T+ +I + D E LF+ VP + K WAL++ + G Sbjct: 121 IMMENIHSETYALLIDTYIKDTTEKNRLFHAIETVPCVKKKGEWALKWIE--------NG 172 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 T F + L F V EG++F F I L + M G+ + I RDE +H F Sbjct: 173 T------FAERLVAFAAV-EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCEF 225 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + + + K ++ T++ +A +E + + +P +G+NA QY++ Sbjct: 226 ACLLYSMLS-------NKLSKEAVTTIIADAVEIEKEFVTDALPVNLIGMNAKLMSQYIE 278 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 F+A+R ++G + L+ T NPF +M E+I L+ + NFFE RV +YQ+ L D Sbjct: 279 FVADRWLQELGYDKLYHAT-NPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLNND 331 >gi|75076588|sp|Q4R741|RIR2B_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B gi|67969468|dbj|BAE01083.1| unnamed protein product [Macaca fascicularis] Length = 351 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/343 (29%), Positives = 165/343 (48%), Gaps = 28/343 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S + + +++ +L S + P++Y W+ Y A + W EV + DL Sbjct: 18 SSSDTNDNEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPH 77 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VH Sbjct: 78 W---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVH 134 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D + LFN +P + KA+WAL++ S T G + Sbjct: 135 SEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----- 186 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 187 -----VVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ- 240 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 +L K +++ R ++ +A +E + E +P G +G+N +QY++F+A+R Sbjct: 241 ------YLVNKPSEERVREIIVDAVQIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLL 294 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 295 VELGFSKIFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335 >gi|281200507|gb|EFA74725.1| ribonucleotide reductase small subunit [Polysphondylium pallidum PN500] Length = 335 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/332 (28%), Positives = 162/332 (48%), Gaps = 32/332 (9%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L P+KY W+ Y A + W E+ + D+ W++K L D+ER I Sbjct: 9 ILKENKDRFVLFPIKYADIWQMYKKAEASFWTAEEIDLAGDIGDWENK--LNDNERHFIT 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + D Sbjct: 67 NVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIKDSE 126 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + +F+ +P++ KA+WAL++ S F + L F V EG++ Sbjct: 127 TKRNIFHAIDTIPAVKKKADWALRWISNSKS-------------FAERLVAFAAV-EGIF 172 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQ 258 F F I L + M G+ + I RDE LH +F + ++ K++N + Sbjct: 173 FSGSFCSIFWLKKRGLMHGLTFSNELISRDEGLHCDFACLLYQKLQNKLDNNTI------ 226 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 T++ +A E + E++P +G+N+ S QY++F A+R +G + ++ + N Sbjct: 227 ---ETIIRDAVACEKEFITESLPVDLIGMNSRSMSQYIEFCADRLLLSLGYKKIYN-SSN 282 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF WM E+I L+++ NFFE +V+EYQ+ K Sbjct: 283 PFDWM-EMISLQRKTNFFEGKVSEYQKSGVAK 313 >gi|168186576|ref|ZP_02621211.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum C str. Eklund] gi|169295422|gb|EDS77555.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum C str. Eklund] Length = 342 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/320 (28%), Positives = 168/320 (52%), Gaps = 16/320 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA E Y + NN W+P E+ + +D+ K + LTD ER + + F +S+ Sbjct: 32 IKYNWANELYRNMLNNFWIPEEISLNEDV---KQFSYLTDGERNAFDKIISFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++ + ++++ +RE + Sbjct: 89 SENLP-NISRYITAPEVSSILNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDKN 147 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + + Q + T + FL+ + Y++ EG++FY+GF+ +L R Sbjct: 148 LLERNKFIAGIYQRFNENPTT-------ENFLRTIMANYIL-EGIYFYSGFSFFYTLARQ 199 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM + ++YI RDE HL ++I ++K EN ++T+ ++ R M+ EI Sbjct: 200 GKMTATSTIFKYINRDEITHLILFQNIIKELKNENLDIFTESIIEEFRMMMKTGVEHEIK 259 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333 + +G+N E+Y+++++N R + IGLE L+ + TE+P W+ L K Sbjct: 260 WGQYVTNNEILGINNNLIEKYIKYLSNLRLNAIGLEVLYPEITEHPMEWIENFSKLNNTK 319 Query: 334 -NFFETRVTEYQQGAELKWD 352 +FFE +VT Y + A +D Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339 >gi|330804590|ref|XP_003290276.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum] gi|325079602|gb|EGC33194.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum] Length = 335 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/327 (30%), Positives = 157/327 (48%), Gaps = 32/327 (9%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L P+KY W Y A + W E+ + DL W SK L D+ER I Sbjct: 9 ILKENKDRFVLFPIKYPDIWSMYKQAEASFWTAEEIDLAPDLNDWSSK--LNDNERHFIS 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + D Sbjct: 67 NVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIKDNE 126 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + +LFN +P I KA+WAL++ S F + L F V EG++ Sbjct: 127 QKSKLFNAIDTIPCIKKKADWALKWINNSDS-------------FAERLVAFAAV-EGIF 172 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQ 258 F F I L + M G+ + I RDE LH NF + ++ K+E+ L Sbjct: 173 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCNFACLLYTKLINKLESKTL------ 226 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ +A + E + +++P +G+N+ S QY++F A+R +G + ++ + N Sbjct: 227 ---EAIIRDAVVCEKEFICDSLPVDLIGMNSRSMSQYIEFCADRLLVSLGYKKIYNAS-N 282 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQ 345 PF WM E+I L+++ NFFE +V EY + Sbjct: 283 PFDWM-EMISLQRKTNFFEGKVAEYAK 308 >gi|73974202|ref|XP_858105.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible) isoform 4 [Canis familiaris] Length = 374 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 107/353 (30%), Positives = 169/353 (47%), Gaps = 37/353 (10%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E V D++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 24 ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 81 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D + LFN +P + KA+WAL++ + S T G + Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS---TFGER----------V 187 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG-------IDVIN 243 V + EG++F FA I L + M G+ + I RDE LH +F ++ + Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPS 247 Query: 244 QIKIENPHLWTKEFQQKSRT--MLHEATLLEIA-------YAHETMPKGFVGLNAPSCEQ 294 + ++ + E +Q SR M+ + LEIA + E +P G +G+N +Q Sbjct: 248 EERVREIIVNAVEIEQVSREAYMISTSLFLEIATCRSKHEFLTEALPVGLIGMNCVLMKQ 307 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 Y++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV EYQ+ A Sbjct: 308 YIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQRFA 358 >gi|194673004|ref|XP_607398.4| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] gi|297482473|ref|XP_002692807.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Bos taurus] gi|296480530|gb|DAA22645.1| ribonucleotide reductase M2 polypeptide-like [Bos taurus] Length = 351 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/337 (29%), Positives = 162/337 (48%), Gaps = 28/337 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E D++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 24 ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKKAQASFWTAEEVDLSKDLPHW---NK 80 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 81 LKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D + LFN +P + KA+WAL++ S T G + Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----------V 187 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------- 240 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 +L K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G Sbjct: 241 YLVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTELGFS 300 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 301 KVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335 >gi|317182342|dbj|BAJ60126.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F57] Length = 341 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 166/316 (52%), Gaps = 15/316 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L +KY WA + + N W EV M DD + L+ +E++ R L + Sbjct: 33 LNKIKYQWADHLWKTMLANTWFAEEVSMNDDK---RDYLKLSAEEKIGYDRALAQLIFMD 89 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 SL NN++ + +++PE L+RQA+EEA+HSH + ++ S+ + E+++M+R Sbjct: 90 SLQTNNLIDNVNPFITSPEINLCLVRQAYEEALHSHAYAVMVESISANTEEIYDMWRNDM 149 Query: 154 SITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ Q Y + +P+ ++ L+ LF ++ EG++FY+GF+ +L Sbjct: 150 QLKNKNDYIAQVYMELAKNPT--------EENILKALFANQIL-EGIYFYSGFSYFYTLA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM+G A+ ++I RDE HL ++IN ++ E L+T + + M +A +E Sbjct: 201 RSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNERADLFTPQLINEVIGMFKKAVEIE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ Sbjct: 261 ALWGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQ 319 Query: 333 K-NFFETRVTEYQQGA 347 + NFFE RV+ Y +G+ Sbjct: 320 RSNFFEARVSNYAKGS 335 >gi|291220709|ref|XP_002730368.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Saccoglossus kowalevskii] Length = 402 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 103/347 (29%), Positives = 164/347 (47%), Gaps = 31/347 (8%) Query: 5 TGLSPIQAGEKRV---NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T + P++ +++ N +D+ +L + P+KY W+ Y A + W EV + Sbjct: 63 TDVEPVKLEKRKSKPQNNEDEPLLRDNPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDL 122 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DLA W S L DDER I L FFA+S+ +V N+V + + E R + Q Sbjct: 123 SKDLAHWAS---LKDDERHFISHVLAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQI 179 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS + +I + D E LFN +P + KA WAL + Sbjct: 180 AIENIHSEMYSLLIDTYIRDPQEREYLFNAIETLPPVKRKAQWALNWI------------ 227 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 +AD + V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 228 -NADNATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 286 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + HL K QQ+ ++ +A +E + + +P +G+N +QY++F Sbjct: 287 CLMFS-------HLTNKPSQQRIIEIIRDAVKIEQEFLTDALPVSLIGMNKDLMKQYIEF 339 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +A+R +G ++ ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 340 VADRLLLDLGCNKIYN-KENPFDFM-ENISLEGKTNFFEKRVGEYQK 384 >gi|298207002|ref|YP_003715181.1| probable ribonucleoside-diphosphate reductase small chain [Croceibacter atlanticus HTCC2559] gi|83849636|gb|EAP87504.1| probable ribonucleoside-diphosphate reductase small chain [Croceibacter atlanticus HTCC2559] Length = 325 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 96/324 (29%), Positives = 161/324 (49%), Gaps = 32/324 (9%) Query: 34 LLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K + AC W E+ + DL W SK L DDER IK L FFA+ Sbjct: 17 IFPIQHNDIWEWYKKMEAC--FWTAEEIDLHQDLTDWNSK--LNDDERYFIKHILAFFAA 72 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 S+ +V N+ + E + + Q E +HS T+ +I + DE E ++R Sbjct: 73 SDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDEAEKDQLFRA 132 Query: 152 V---PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 + P+I KA+WAL++ ++ S F + L F V EG++F F I Sbjct: 133 IEVFPAIKKKADWALKWIESDS--------------FAERLIAFAAV-EGIFFSGAFCSI 177 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 L + M G+ + I RDE +H +F + + N HL K +++ R ++ +A Sbjct: 178 FWLKKRGLMPGLTFSNELISRDEGMHCDFA------VHLHNKHLVNKVSKERIREIIVDA 231 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +E + E++P +G+N+ QY++F+ +R ++ E + T NPF +M ++I Sbjct: 232 LNIEREFITESLPASLIGMNSNLMTQYLEFVTDRLLLELECEKEYN-TANPFDFM-DMIS 289 Query: 329 LKKEKNFFETRVTEYQQGAELKWD 352 L+ + NFFE RV +YQ+ + D Sbjct: 290 LQGKTNFFEKRVGDYQKAGVMDQD 313 >gi|254586079|ref|XP_002498607.1| ZYRO0G14388p [Zygosaccharomyces rouxii] gi|238941501|emb|CAR29674.1| ZYRO0G14388p [Zygosaccharomyces rouxii] Length = 412 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 148/317 (46%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W +K +++ ER I R L FFA+S+ Sbjct: 101 LFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLDDWNNK--MSEGERYFISRVLAFFAASD 158 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 159 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYSRDTEESEFLFNAIE 218 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ Q D + V + EG++F FA I Sbjct: 219 NIPPIKEKAEWAIRWIQD-------------DTALYAERLVAFAAVEGVFFSGSFAAIFW 265 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL + ++ EA Sbjct: 266 LKKKGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNRPSPDIVERIITEAVS 318 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E Y + +P +G+NA QY++F+A+R +G E + T NPF +M E I L Sbjct: 319 IEKRYFEDALPVALLGMNAALMNQYVEFVADRLLVALGNEKYYNVT-NPFDFM-ENISLA 376 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 377 GKTNFFEKRVSDYQKAG 393 >gi|88607783|ref|YP_505152.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma phagocytophilum HZ] gi|88598846|gb|ABD44316.1| ribonucleoside-diphosphate reductase, beta subunit [Anaplasma phagocytophilum HZ] Length = 323 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 160/315 (50%), Gaps = 17/315 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF ++ + Sbjct: 12 PFDYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTM--LSEKEKNLLVQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y ++ P ++ AF E +H + Y++ ++G+ E E + + + Sbjct: 69 EVNNCYMKHYSNIFRP-TEICMMLSAFSNMETIHVAAYSYLLDTIGMPEVE-YQAFLKFE 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ ++ + G K + + L VF EG+ + FA +L+ R Sbjct: 127 VMKKKYDYMQRFEEC------RRGDK---RHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + + RDESLH + I + N EN +W + +Q+ +LE Sbjct: 178 FGKMKGMGQIIAWSARDESLHTDSIIRLFNTFVHENGEIWDDDLKQELYDACKVIVMLED 237 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + G V GL+A ++Y++FIANRR Q+ LEP++ ENP PW+ E+++ + Sbjct: 238 EFIDLAFALGDVEGLSACEVKRYIRFIANRRLKQLHLEPIYDVAENPLPWLDEILNGVEH 297 Query: 333 KNFFETRVTEYQQGA 347 NFFE RVTEY + A Sbjct: 298 TNFFENRVTEYARAA 312 >gi|91215505|ref|ZP_01252476.1| probable ribonucleoside-diphosphate reductase small chain [Psychroflexus torquis ATCC 700755] gi|91186457|gb|EAS72829.1| probable ribonucleoside-diphosphate reductase small chain [Psychroflexus torquis ATCC 700755] Length = 326 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 94/317 (29%), Positives = 158/317 (49%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ + WE Y + W E+ +Q D+ WK+K L+ DE+ IK L FFA+S+ Sbjct: 17 LFPITHPDIWEWYKKCEASFWTAEEIDLQQDITDWKTK--LSKDEQYFIKHILAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E + + Q E +HS T+ +I + D+ E LF Sbjct: 75 GIVNENLAENFVNEVQYTEAKFFYGFQIMVENIHSETYSLLIDTYVDDDKEKDLLFKAIE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 P+I KA+WALQ+ ++ S F + L F V EG++F F I Sbjct: 135 NFPAIKKKADWALQWIESDS--------------FAERLIAFAAV-EGIFFSGAFCSIFW 179 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE +H +F + + N HL + +++ R ++ +A Sbjct: 180 LKKRGLMPGLTFSNELISRDEGVHCDFA------VHLHNEHLVNQVPKERIRAIIVDALT 233 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E++P +G+N+ QY++F+A+R ++G + + T NPF +M ++I L+ Sbjct: 234 IEREFVTESLPVSLIGMNSNLMTQYLEFVADRLLFELGCDKEYG-TANPFDFM-DMISLQ 291 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ Sbjct: 292 GKTNFFEKRVGEYQKAG 308 >gi|225012154|ref|ZP_03702591.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-2A] gi|225003709|gb|EEG41682.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-2A] Length = 325 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 98/319 (30%), Positives = 156/319 (48%), Gaps = 28/319 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ WE Y + W E+ + DL W +K LT+DE+ IK L FFA+S+ Sbjct: 17 IFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNTK--LTEDEKYFIKHILAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E + + Q E +HS T+ +I + D+ E LF Sbjct: 75 GIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKDDVEKDRLFKAIE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 P+I KA+WAL++ + S F + L F V EG++F F I Sbjct: 135 VFPAIKKKADWALRWIDSDS--------------FAERLIAFAAV-EGIFFSGAFCSIYW 179 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE +H +F + + N HL K + + +L +A Sbjct: 180 LKKRGLMPGLTFSNELISRDEGVHCDFAV------HLHNHHLVNKVPPARIKEILLDALT 233 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E++P +G+NA QY++F+ +R ++GLE F T NPF +M ++I L+ Sbjct: 234 IEREFITESLPISLIGMNAKLMTQYLEFVTDRLLQELGLEKEFNVT-NPFDFM-DMISLQ 291 Query: 331 KEKNFFETRVTEYQQGAEL 349 + NFFE RV EYQ+ L Sbjct: 292 GKTNFFEKRVGEYQKAGVL 310 >gi|324519017|gb|ADY47264.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum] Length = 376 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 97/322 (30%), Positives = 156/322 (48%), Gaps = 28/322 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y A + W EV + D W++ L+D ER I R L FFA+S+ Sbjct: 69 IFPIKYHDIWDFYKRAVASFWTVEEVDLSKDYQHWEN---LSDGERFFISRVLAFFAASD 125 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E +HS + ++ + D+ E LFN Sbjct: 126 GIVNENLVERFAQEVQVPEARFFYGFQIMIENIHSEMYSKMVETYIRDDNERKKLFNAIN 185 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E I KA+WAL++ +P + + L F V EG++F FA I Sbjct: 186 EFEFIKKKADWALKWIADKQAP------------YAERLIAFAAV-EGIFFSGSFAAIFW 232 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL K +++ ++ EA Sbjct: 233 LKKRGLMPGLTHSNELISRDEGLHRDFACLMFS-------HLKKKPNKERIYEIIREAVK 285 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E Y E +P G +G+N QY++++A+ ++ L+ ENPF +M+ I ++ Sbjct: 286 IEQEYLTEALPVGLIGMNCELMSQYIEYVADHLLTELKCPKLYN-MENPFDFMAR-ISIE 343 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE RV+EYQ+ L D Sbjct: 344 AKTNFFEKRVSEYQKAGVLSTD 365 >gi|330941350|gb|EGH44202.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 109 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 66/109 (60%), Positives = 82/109 (75%) Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 1 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 60 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 61 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 109 >gi|157964544|ref|YP_001499368.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia massiliae MTU5] gi|157844320|gb|ABV84821.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia massiliae MTU5] Length = 336 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 161/319 (50%), Gaps = 28/319 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ + Sbjct: 13 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y + P ++ AF E VH + +++ ++G+ E E ++ + + Sbjct: 70 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 127 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ Q+ DA ++ L VF EG+ + FA +L+ R Sbjct: 128 EMKDKYDYMQQFGV------------DAKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 175 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EA 268 NKM G+ + + +RDE+LH N I + ENP +WT+ +++ T++H E Sbjct: 176 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 235 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +E+A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ Sbjct: 236 AFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLN 291 Query: 329 LKKEKNFFETRVTEYQQGA 347 + NFFE R TEY + A Sbjct: 292 GVEHTNFFENRATEYSKAA 310 >gi|91763118|ref|ZP_01265082.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus Pelagibacter ubique HTCC1002] gi|91717531|gb|EAS84182.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 342 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 95/320 (29%), Positives = 157/320 (49%), Gaps = 30/320 (9%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y W ++ +L+ HW+P EVP+ DD+ W+ LT E+ ++ + FF ++ Sbjct: 35 PFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQ--KNLTQSEKNLLTQIFRFFTQADVE 92 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V N L Y + P E + A E VH + +++ ++G+ E E F Y+E+ Sbjct: 93 V-QNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESEYSAFMKYKEM 151 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 Y Q S ++ + VF EG+ + FA +L+ Sbjct: 152 KD-------KYDYMQNFDMSS--------KKDIALTVAVFSAFTEGLQLFASFAILLNFP 196 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ----QKSRTML-HE 267 R NKM G+ + + +RDE+LH N I + + ENP +WT E + + RT++ HE Sbjct: 197 RHNKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEIWTPELKAELYKACRTIIEHE 256 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 +++A+ M GL A + Y++FIANRR Q+GLEP++ +NP W+ ++ Sbjct: 257 DAFIDLAFEMGPMQ----GLTAQDVKLYIRFIANRRLSQLGLEPIYDVDKNPLTWLDSML 312 Query: 328 DLKKEKNFFETRVTEYQQGA 347 + + NFFE R TEY + A Sbjct: 313 NAVEHMNFFEGRSTEYSKAA 332 >gi|225432510|ref|XP_002279943.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 340 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 152/317 (47%), Gaps = 29/317 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y A + W EV + D+ W+S L++ E+ I L FFA+S+ Sbjct: 31 MFPIRYRQLWEMYKKAEASFWTAEEVDLSHDVQQWES---LSNSEKHFISHVLAFFAASD 87 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS + ++ + D E LFN Sbjct: 88 GIVLENLAARFLHDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIE 147 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KA WAL + Q+ + F + L F V EG++F F I Sbjct: 148 SISCVAGKAKWALDWIQSSTL-------------FAERLIAFACV-EGIFFSGSFCAIFW 193 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + ++ + P W QK ++HEA Sbjct: 194 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLP--W-----QKVHHIVHEAVE 246 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+NA QY++F+A+R +G E + ENPF WM E I L+ Sbjct: 247 IETQFVCEALPCALIGMNATLMSQYIKFVADRLLVALGYERKYN-VENPFDWM-EFISLQ 304 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ + Sbjct: 305 GKANFFERRVGDYQKAS 321 >gi|31322342|gb|AAP15464.1| ribonucleotide reductase small subunit [Rickettsia rickettsii str. 'Sheila Smith'] Length = 336 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 94/325 (28%), Positives = 163/325 (50%), Gaps = 32/325 (9%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK------SKNGLTDDERLMIKRNLGFF 89 P Y WA+E + + HW+P EVP+ DD+ WK K+ LT E+ ++ + FF Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKYNLTPGEKHLLTPGEKHLLTQIFRFF 71 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFN 147 ++ + NN + Y + P ++ AF E VH + +++ ++G+ E E ++ Sbjct: 72 TQAD-IEVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YS 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + + + K ++ Q+ DA ++ L VF EG+ + FA Sbjct: 129 AFLKYKEMKDKYDYMQQFGV------------DAKEDIATTLAVFGAFTEGLQLFASFAI 176 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRT 263 +L+ R NKM G+ + + +RDE+LH N I + ENP +WT+ +++ T Sbjct: 177 MLNFPRFNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTT 236 Query: 264 MLH-EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 ++H E +E+A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW Sbjct: 237 IVHFEDAFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPW 292 Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA 347 + E+++ + NFFE R TEY + A Sbjct: 293 LDEMLNGVEHTNFFENRTTEYSKAA 317 >gi|120437796|ref|YP_863482.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii KT0803] gi|117579946|emb|CAL68415.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii KT0803] Length = 325 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 99/334 (29%), Positives = 167/334 (50%), Gaps = 32/334 (9%) Query: 24 MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D + P+K+ W W K + AC W E+ + +DL+ W +K L+ DER Sbjct: 7 ILQENKDRFVIFPIKHHDIWDWYKKMEAC--FWTAEEIDLHEDLSDWNNK--LSADERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 +K L FFA+S+ +V N+ + E + + Q E +HS T+ +I + + Sbjct: 63 LKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKN 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E LF P+I KA+WAL++ ++ S F + L F V EG Sbjct: 123 EKEKDQLFKAIEVFPAIKKKADWALKWIESDS--------------FAERLIAFAAV-EG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + NQ HL + + Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLHNQ------HLVNQVPK 221 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 +K R +L +A +E + E++P +G+NA QY++F+ +R ++ E + + N Sbjct: 222 EKIREILIDALNIEREFVTESLPVSLIGMNAKLMTQYLEFVTDRLLVELDCEKEYNVS-N 280 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PF +M ++I+L+ + NFFE RV+EYQ+ + D Sbjct: 281 PFDFM-DMINLQGKTNFFEKRVSEYQKAGVMNKD 313 >gi|71083845|ref|YP_266565.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Pelagibacter ubique HTCC1062] gi|71062958|gb|AAZ21961.1| ribonucleoside-diphosphate reductase beta chain [Candidatus Pelagibacter ubique HTCC1062] Length = 337 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 95/320 (29%), Positives = 157/320 (49%), Gaps = 30/320 (9%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y W ++ +L+ HW+P EVP+ DD+ W+ LT E+ ++ + FF ++ Sbjct: 30 PFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQ--KNLTQSEKNLLTQIFRFFTQADVE 87 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V N L Y + P E + A E VH + +++ ++G+ E E F Y+E+ Sbjct: 88 V-QNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESEYSAFMKYKEM 146 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 Y Q S ++ + VF EG+ + FA +L+ Sbjct: 147 KD-------KYDYMQNFDMSS--------KKDIALTVAVFSAFTEGLQLFASFAILLNFP 191 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ----QKSRTML-HE 267 R NKM G+ + + +RDE+LH N I + + ENP +WT E + + RT++ HE Sbjct: 192 RHNKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEIWTPELKAELYKACRTIIEHE 251 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 +++A+ M GL A + Y++FIANRR Q+GLEP++ +NP W+ ++ Sbjct: 252 DAFIDLAFEMGPMQ----GLTAQDVKLYIRFIANRRLSQLGLEPIYDVDKNPLTWLDSML 307 Query: 328 DLKKEKNFFETRVTEYQQGA 347 + + NFFE R TEY + A Sbjct: 308 NAVEHMNFFEGRSTEYSKAA 327 >gi|15892574|ref|NP_360288.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia conorii str. Malish 7] gi|34580440|ref|ZP_00141920.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia sibirica 246] gi|157828524|ref|YP_001494766.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933242|ref|YP_001650031.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia rickettsii str. Iowa] gi|229586746|ref|YP_002845247.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia africae ESF-5] gi|238650260|ref|YP_002916112.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia peacockii str. Rustic] gi|15619738|gb|AAL03189.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia conorii str. Malish 7] gi|28261825|gb|EAA25329.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia sibirica 246] gi|157801005|gb|ABV76258.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908329|gb|ABY72625.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia rickettsii str. Iowa] gi|228021796|gb|ACP53504.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia africae ESF-5] gi|238624358|gb|ACR47064.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia peacockii str. Rustic] Length = 328 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 161/319 (50%), Gaps = 28/319 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y + P ++ AF E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ Q+ DA ++ L VF EG+ + FA +L+ R Sbjct: 127 EMKDKYDYMQQFGV------------DAKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EA 268 NKM G+ + + +RDE+LH N I + ENP +WT+ +++ T++H E Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +E+A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ Sbjct: 235 AFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLN 290 Query: 329 LKKEKNFFETRVTEYQQGA 347 + NFFE R TEY + A Sbjct: 291 GVEHTNFFENRTTEYSKAA 309 >gi|261189551|ref|XP_002621186.1| ribonucleotide reductase small subunit RnrA [Ajellomyces dermatitidis SLH14081] gi|239591422|gb|EEQ74003.1| ribonucleotide reductase small subunit RnrA [Ajellomyces dermatitidis SLH14081] gi|239613047|gb|EEQ90034.1| ribonucleotide reductase small subunit RnrA [Ajellomyces dermatitidis ER-3] gi|327356917|gb|EGE85774.1| ribonucleotide reductase M2 B [Ajellomyces dermatitidis ATCC 18188] Length = 413 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 102/346 (29%), Positives = 162/346 (46%), Gaps = 35/346 (10%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TG+ ++A E + + R + L PLKY W+ Y A + W E+ + D Sbjct: 70 TGMKALEAEEPLLQENPNRFV--------LFPLKYHEIWQMYKKAEASFWTAEEIDLSKD 121 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W N L DDER I L FFA+S+ +V N+V + PE R + Q E Sbjct: 122 LHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSSEVQVPEARCFYGFQIMME 179 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 +HS T+ +I + + + LF+ +P I KA+WA+++ + D Sbjct: 180 NIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIE------------DK 227 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 + F Q L F V EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 228 ESSFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLL 286 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 + HL + + ++ EA +E + + +P +G+NA QY++F+A+ Sbjct: 287 FS-------HLRHRPSPEAVERIITEAVTIEQEFLSDALPVALLGMNAKLMCQYIEFVAD 339 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 R +G + ++ T NPF +M I L + NFFE RV +YQ+ Sbjct: 340 RLLVALGNKKVYNST-NPFDFMDN-ISLAGKTNFFEKRVGDYQKAG 383 >gi|325286576|ref|YP_004262366.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489] gi|324322030|gb|ADY29495.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489] Length = 328 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 97/327 (29%), Positives = 161/327 (49%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+K+ W+ Y + W E+ + DL WK+K L DDER IK Sbjct: 8 ILEKNEDRFVIFPIKHNDLWDWYKKCEASFWTAEEIDLHADLDDWKNK--LNDDERYFIK 65 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E + + Q E +HS T+ +I + DE Sbjct: 66 HILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEK 125 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF+ P+I KA+WAL++ + SPSF + L F V EG++ Sbjct: 126 EKDILFHALENFPAIRKKADWALKWIE---SPSFA-----------ERLIAFAAV-EGIF 170 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE +H ++ + + N HL K +++ Sbjct: 171 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYA------VHLHNHHLINKVPKER 224 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 +L +A +E + E++P +G+N+ QY++F+ +R ++ + ++ T NPF Sbjct: 225 ITEILVDALDIEREFITESLPVSLIGMNSKLMTQYLEFVTDRLLVELNCDKVYNST-NPF 283 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M ++I L+ + NFFE RV EYQ+ Sbjct: 284 DFM-DMISLQGKTNFFEKRVAEYQKSG 309 >gi|313844096|ref|YP_004061759.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1] gi|312599481|gb|ADQ91503.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1] Length = 408 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 156/313 (49%), Gaps = 28/313 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PLKY WE Y A ++W EV + DL WK+ L ++E+ IK L FFA S+ Sbjct: 105 VFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNENEKKFIKYILAFFAGSD 161 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V NI + + E R + Q E VH T+ +I G ++ +LF + Sbjct: 162 GIVFENINNNFADEVQSSEARSFYAYQCHNEMVHGETYSKLIDKYIKDGAEKKQLFEAIQ 221 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP I KA+WA+++ T S + F + LF F V EG++F F I Sbjct: 222 TVPCIQKKADWAMKWFDTKS------------RSFAERLFAFACV-EGIFFSGSFCAIYW 268 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH F +++ ++I K + +++ EA Sbjct: 269 LKKRGLMPGLCFSNELISRDEGLHQEFAVELFKLLRI-------KPTTETIHSIVKEAVE 321 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ +Y++++++R QIG+ P++ ++NPF +M E I L Sbjct: 322 IEKGFILDALPCALIGMNSEKMSEYIEYVSDRLLKQIGVPPIWN-SKNPFDFM-ENISLD 379 Query: 331 KEKNFFETRVTEY 343 + NFFE RV +Y Sbjct: 380 GKTNFFEKRVGDY 392 >gi|154250961|ref|YP_001411785.1| ribonucleotide-diphosphate reductase subunit beta [Parvibaculum lavamentivorans DS-1] gi|154154911|gb|ABS62128.1| Ribonucleoside-diphosphate reductase [Parvibaculum lavamentivorans DS-1] Length = 319 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 165/319 (51%), Gaps = 28/319 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E +L+ HW+P EVP+ DD+ W K LT+ ER ++ + FF ++ Sbjct: 12 PFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWSKK--LTEGERNLLTQIFRFFVQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 V NN + Y + P Q +L AF E VH + +++ ++G+ E E + + + Sbjct: 70 V-NNCYMKHYSRVFKPTEVQMML-AAFSNIETVHISAYSHLLDTIGMPEAE-YEAFLKYE 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ ++ + + + L VF EG+ + FA +++ R Sbjct: 127 QMKTKFDYMQEWGV------------ETKADIAKTLAVFGGFTEGVQLFASFAILMNFPR 174 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ----QKSRTMLH-EA 268 NKM G+ + + RDE+LH + + ENP +WT+E + + T++H E Sbjct: 175 FNKMKGMGQIVTWSARDETLHTVSAMKLFRTFVDENPEIWTEELRRDIYKACETIIHHED 234 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +++A+ ++ GL+A + Y+++IA+RR Q+ L+P+++ +NP PWM E+++ Sbjct: 235 AFIDLAFEMGSIE----GLSAQEVKNYIRYIADRRLVQLNLQPIYRTEKNPLPWMDEMLN 290 Query: 329 LKKEKNFFETRVTEYQQGA 347 + NFFE R TEY + + Sbjct: 291 GIEHTNFFENRATEYSKAS 309 >gi|50545856|ref|XP_500466.1| YALI0B03630p [Yarrowia lipolytica] gi|49646332|emb|CAG82692.1| YALI0B03630p [Yarrowia lipolytica] Length = 403 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 154/317 (48%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + D+ W+ N L +DER I L FFA+S+ Sbjct: 89 LFPIQYHEIWQMYKKAEASFWTAEEIDLGKDMGDWE--NRLNNDERFFISHVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 147 GIVNENLVERFSGEVQAPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKERTYLFNAIE 206 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WAL++ D + F + L F V EG++F FA I Sbjct: 207 TIPCIKKKADWALKWIS------------DEESTFGERLIAFAAV-EGIFFSGSFASIFW 253 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ ++ EA Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLENRPSKKIVEDVIVEAVG 306 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P G +G+NA QY++F+A+R +G ++ T NPF +M E I L Sbjct: 307 IEQEFLTDALPCGLLGMNAKLMCQYIEFVADRLLVALGNSKVYNST-NPFDFM-ENISLA 364 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 365 GKTNFFEKRVSDYQKAG 381 >gi|301166951|emb|CBW26530.1| putative ribonucleoside-diphosphate reductase small chain subunit [Bacteriovorax marinus SJ] Length = 322 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 103/332 (31%), Positives = 158/332 (47%), Gaps = 33/332 (9%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L PLKY +E Y + W E+ D+ W+ L DE+ IK Sbjct: 4 ILAPNDDRFVLFPLKYHSIFEMYKNHMAVFWTADELDFASDITDWEK---LNKDEQHFIK 60 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ L Y + PE R + Q E +HS T+ +I + D Sbjct: 61 HILAFFAASDGIVNENLALRFYNDVQIPEARCFYGFQIAMENIHSETYSLLIDTYVKDPK 120 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + ELF+ P + KA+WA+++ Q+ S F + L F + EG++ Sbjct: 121 EKDELFHAVTHFPFVEKKADWAMKWMQSKRS-------------FAERLIAFAAI-EGIF 166 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ ++I RDE LH F + L T E Q Sbjct: 167 FSGSFCSIYWLKKRGLMPGLCTSNEFISRDEGLHCEFACHI--------HELLTPEEQLN 218 Query: 261 SRT---MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 T ++ EA +E + E +P +G+NA +Y++F+A+ +++G E + TE Sbjct: 219 KETITQIITEAVSIEKEFITEAIPVSLIGMNADMMSRYIEFVADYWLNRLGCEKAYN-TE 277 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF WM E+I L+ + NFFE RV+EYQ+ L Sbjct: 278 NPFDWM-ELISLEGKTNFFEKRVSEYQKPGVL 308 >gi|260061082|ref|YP_003194162.1| putative ribonucleoside-diphosphate reductase small chain [Robiginitalea biformata HTCC2501] gi|88785214|gb|EAR16383.1| probable ribonucleoside-diphosphate reductase small chain [Robiginitalea biformata HTCC2501] Length = 328 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 98/329 (29%), Positives = 162/329 (49%), Gaps = 32/329 (9%) Query: 24 MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D + P+++ W W K AC W E+ + DL+ W +K L+DDE+ Sbjct: 8 ILKENKDRFVIFPIQHHDLWEWYKKCEAC--FWTAEEIDLHQDLSDWNNK--LSDDEKYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E LF P+I KA+WAL++ + SPSF + L F V EG Sbjct: 124 EKEKNVLFQAIENFPAIKKKADWALKW---IESPSFA-----------ERLIAFAAV-EG 168 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H ++ + + N HL K + Sbjct: 169 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYA------VHLHNNHLVNKVPK 222 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ ++ A +E + E++P +G+NA QY++F+ +R ++ E ++ T N Sbjct: 223 ERITQIITNALDIEREFITESLPVSLIGMNAKLMTQYLEFVTDRLLVELECEKVYNST-N 281 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 PF +M ++I L+ + NFFE RV+EYQ+ Sbjct: 282 PFDFM-DMISLQGKTNFFEKRVSEYQKAG 309 >gi|45184688|ref|NP_982406.1| AAL136Cp [Ashbya gossypii ATCC 10895] gi|44980034|gb|AAS50230.1| AAL136Cp [Ashbya gossypii ATCC 10895] Length = 422 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 98/317 (30%), Positives = 152/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ W N +T++ER I R L FFA+S+ Sbjct: 109 LFPIKYHDIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMTENERFFISRVLAFFAASD 166 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 167 GIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKEADHLFNAIE 226 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ Q D D F + L F V EG++F FA I Sbjct: 227 TIPEIKEKAEWAIRWIQ------------DKDALFAERLVAFAAV-EGIFFSGSFAAIFW 273 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL K + ++ EA Sbjct: 274 LKKKGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLNNKPDTEIVEKIITEAVE 326 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E Y + +P +G+N+ QY++F+A+R +G + + + NPF +M E I L Sbjct: 327 IEKRYFQDAIPVALLGMNSSLMNQYVEFVADRLLVALGNKKYYNVS-NPFDFM-ENISLA 384 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 385 GKTNFFEKRVSDYQKAG 401 >gi|226950223|ref|YP_002805314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A2 str. Kyoto] gi|226843961|gb|ACO86627.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A2 str. Kyoto] Length = 342 Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 91/321 (28%), Positives = 167/321 (52%), Gaps = 18/321 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDEH 147 Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + + + A Y + P FL+ + Y++ EG++FY+GF+ +L R Sbjct: 148 LLERNKFIAGIYEKFNKEPEI--------HNFLRVIMANYIL-EGIYFYSGFSFFYTLAR 198 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM + ++YI RDE HL ++I ++K ENPH++T+E +++ R M+ EI Sbjct: 199 QGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENPHIFTEELEEEFRQMMRIGVEHEI 258 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332 + +GLN E+Y+++++N R IGL+PL+ + ++P W+ L Sbjct: 259 QWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYLEINKHPMEWIDSFSKLNST 318 Query: 333 K-NFFETRVTEYQQGAELKWD 352 K +FFE +VT Y + A +D Sbjct: 319 KTDFFEAKVTNYTKAAAFDFD 339 >gi|149248382|ref|XP_001528578.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces elongisporus NRRL YB-4239] gi|146448532|gb|EDK42920.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces elongisporus NRRL YB-4239] Length = 422 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 93/317 (29%), Positives = 153/317 (48%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W E+ + D+ WK+K L ++ER I R L FFA+S+ Sbjct: 111 MFPIRYHEIWQMYKKAEASFWTAEEIDLGKDMHDWKNK--LNENERFFISRILAFFAASD 168 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 169 GIVNENLVENFSAEVQIPEAKSFYGFQIMMENIHSETYSLLIDTYIKDPKEADFLFNAID 228 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ + D + V + EG++F FA I Sbjct: 229 NIPQIKKKADWAIRWI-------------NDDNALFAERLVAFAAVEGVFFSGSFASIFW 275 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + + ++ EA Sbjct: 276 LKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLENRPDPKIVEKIISEAVE 328 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R +G E ++K T NPF +M E I L Sbjct: 329 IEKEFFTDALPVSLLGMNCKLMCQYVEFVADRLLVALGNEKIYKVT-NPFDFM-ENISLA 386 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 387 GKTNFFEKRVSDYQKAG 403 >gi|118087248|ref|XP_418364.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 353 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 158/317 (49%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++ W+ Y A + W EV + DL W N L DE+ I L FFA+S+ Sbjct: 46 IFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHVLAFFAASD 102 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E VHS + +I + D + LFN Sbjct: 103 GIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEMYSLLIDTYIKDPEKRDFLFNAIE 162 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL++ + D + F + + F V EG++F FA I Sbjct: 163 TMPCVKKKADWALKWIE------------DRESTFGERVVAFAAV-EGIFFSGSFAAIFW 209 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + +L + +++ R ++ A Sbjct: 210 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFH-------YLVNRPSEERVREIIVNAVE 262 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P G +G+N +QY++F+A+R ++G +F + ENPF +M E I L+ Sbjct: 263 IEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLMELGFSKVF-HAENPFDFM-ENISLE 320 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV+EYQ+ A Sbjct: 321 GKTNFFEKRVSEYQRFA 337 >gi|194474072|ref|NP_001124015.1| ribonucleoside-diphosphate reductase subunit M2 B [Rattus norvegicus] gi|149066498|gb|EDM16371.1| ribonucleotide reductase M2 B (TP53 inducible) (predicted) [Rattus norvegicus] Length = 351 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 100/340 (29%), Positives = 164/340 (48%), Gaps = 28/340 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + E V +++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 ETKENEVRSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + LFN +P + KA+WAL++ S T G + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER-------- 186 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 187 --VVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ---- 240 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 +L K +++ ++ +A +E + E +P G +G+N +QY++F+A+R ++ Sbjct: 241 ---YLVNKPSEERVMEIIVDAVKIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLGEL 297 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 298 GFSKIFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335 >gi|150015087|ref|YP_001307341.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium beijerinckii NCIMB 8052] gi|149901552|gb|ABR32385.1| Ribonucleoside-diphosphate reductase [Clostridium beijerinckii NCIMB 8052] Length = 344 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 100/338 (29%), Positives = 173/338 (51%), Gaps = 21/338 (6%) Query: 19 VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + KR++N + ++N +KY W + Y NN W+P EV + DL K L ++ Sbjct: 17 ISKKRIINGNTTNLNDFNNMKYSWVSDWYRQGMNNFWIPEEVNLSQDL---KDYQNLLEE 73 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER+ + L F +S+ N+ I +++ E L Q+F+EAVHS ++ Y++ S Sbjct: 74 ERIAYDKILSFLIFLDSIQTANLS-NINNYITASEINLCLTIQSFQEAVHSQSYSYMLDS 132 Query: 138 LGLDE--GELFNMYREVPSITAKANWALQ--YTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + E E+ +++ I K N + Y + + +P+ + L+ L Y Sbjct: 133 ICSPEKRNEILYQWKD-DDILLKRNKFIGDLYNEFIENPT--------EYNLLRTLMANY 183 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++ ENP L+ Sbjct: 184 IL-EGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQNENPELF 242 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T+E + + R M+ EI + H + G+N E Y++++ N+R +I L PLF Sbjct: 243 TEEVKNELRNMMKIGVEQEILWGHYVIGDKIQGINKQLIENYIKYLGNKRLKEINLSPLF 302 Query: 314 KYTE-NPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 K + NP W+ + + K +FFE R T Y + L Sbjct: 303 KEQDKNPASWVDTLSNANSVKTDFFEARSTAYAKVTTL 340 >gi|189199548|ref|XP_001936111.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983210|gb|EDU48698.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 410 Score = 145 bits (366), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 102/349 (29%), Positives = 161/349 (46%), Gaps = 27/349 (7%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A++ + P A + D+ +L L P+KY W+ Y A + W E+ + Sbjct: 52 ADDEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 111 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W + L DDER I L FFA+S+ +V N+V + PE R + Q Sbjct: 112 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYGFQI 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E VHS T+ +I + D + LFN +P I KA+WAL++ Sbjct: 170 MMENVHSETYSLLIDTYISDTRQRKYLFNAIENIPCIRKKADWALRWIS----------- 218 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 D + F L F V EG++F FA I L + M G+ + I RDE +H +F Sbjct: 219 -DKNSTFANRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFA 276 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + + + ++ R ++ EA +E + + +P +G+NA QY++F Sbjct: 277 CLLFSLLN-------NRPSNEEVRAIITEAVEIEQEFLSDALPCALLGMNATLMCQYIEF 329 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +A+R +G ++ T NPF +M E I L + NFFE RV +YQ+ Sbjct: 330 VADRLLLALGNTKVYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAG 376 >gi|302783485|ref|XP_002973515.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii] gi|302787555|ref|XP_002975547.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii] gi|300156548|gb|EFJ23176.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii] gi|300158553|gb|EFJ25175.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii] Length = 347 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 155/317 (48%), Gaps = 29/317 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y A + W EV + D W+S LTD+E+ + L FFA+S+ Sbjct: 36 MFPIRYPRVWEMYKKAEASFWTAEEVDLSQDAKHWES---LTDNEKHFVSHVLAFFAASD 92 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V N+ + + + PE R + Q E +HS + ++ + D + +LFN Sbjct: 93 GIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLETYIKDNEVKAKLFNAIE 152 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL++ D+ Q F + + F V EG++F F I Sbjct: 153 TIPCVAKKADWALRWI-------------DSSQSFAERIVAFACV-EGIFFSGSFCAIFW 198 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + + + K +++ + ++ +A Sbjct: 199 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLNV-------KLDEKRVKEIVSDAVE 251 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E + VG+NA QY+ F+A+R +G LF NPF WM ++I L+ Sbjct: 252 IERQFVCEALSCDLVGMNARLMSQYIDFVADRLMVVLGYNKLFNAI-NPFDWM-DLISLQ 309 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ + Sbjct: 310 GKTNFFEKRVGEYQKAS 326 >gi|289548460|ref|YP_003473448.1| ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484] gi|289182077|gb|ADC89321.1| Ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484] Length = 342 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 97/329 (29%), Positives = 173/329 (52%), Gaps = 18/329 (5%) Query: 29 SDVNQLLPLKYGWAWEKYLS-ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 +++ +L +KY WA++ Y + N W+P E+ M +D ++ L+ E+ + L Sbjct: 26 TNIMELNNVKYQWAFDLYKTMGFTNFWIPEEISMMEDRKQYE--RVLSAHEKRAYEMVLS 83 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGEL 145 F + +S N ++ R L+ PE + Q F+EA+HS+++Q+I+ S+ + E+ Sbjct: 84 FLIALDSYQVN-MLKEFARFLTAPELTMAITAQEFQEALHSYSYQFILESVVDPVKADEI 142 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE-FLQDLFVFYVVFEGMWFYTG 204 +N +RE + L + + + + D+E FL+ +F YV+ E ++FY+G Sbjct: 143 YNYWRE--------DKVLMERNRVIADLYNDFVRKQDEETFLKAVFGNYVL-ESLYFYSG 193 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 FA +LGR KM+ +Q +YI RDE H++ ++I +K ENP L+T E ++ + Sbjct: 194 FAFFYTLGRQGKMLSTVQQIKYINRDELTHVSLFRNIILTLKKENPELFTPEMEKWVKEF 253 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWM 323 A EI + +G+N ++Y++++AN R QIG EP+F TENP W+ Sbjct: 254 FRYAASEEIKWGQYVTRNQILGINDQLIDRYIKYLANLRLTQIGYEPVFPDVTENPMKWI 313 Query: 324 SEVIDLKKEK-NFFETRVTEYQQGAELKW 351 + K +FF+ + Y + +ELKW Sbjct: 314 DTFRTINDTKTDFFQAKPQTYAKRSELKW 342 >gi|155370982|ref|YP_001426516.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella virus 1] gi|155124302|gb|ABT16169.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella virus 1] Length = 325 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/321 (31%), Positives = 156/321 (48%), Gaps = 28/321 (8%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++Y ++ Y A W EV + D+ W+ K L DDER IK LGFFA S+ Sbjct: 20 FPIRYPDIFQMYKKAVATFWTVEEVQLNQDVVDWREK--LNDDERHFIKHILGFFAGSDG 77 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V N+ +++P R + Q + E+VHS + ++ +L DE E LF Sbjct: 78 MVMENLNNNFAEEVTDPSARMFYAYQGYNESVHSEQYSLLLDALIEDETERNKLFEAIET 137 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 +P++ KA WA +Y D+ F + L V +V EG+ F F I L Sbjct: 138 IPAVGKKAAWASKYFSR-------------DRSFAERL-VAWVCVEGLLFSGSFCAIFWL 183 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 M G+ ++I RDE LH FG + + K+EN K ++++ EA Sbjct: 184 RNRGLMPGLGLSNEFISRDEGLHQQFGELLYS--KLEN-----KLSLDVVKSIVEEAVAN 236 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E + + +P +G+N+ QY++F+A+R +G F ENPF +M E+I L+ Sbjct: 237 EKDFICDAIPCRMIGMNSDLMSQYIEFVADRIFTALGYPKQFG-AENPFDFM-ELISLEG 294 Query: 332 EKNFFETRVTEYQQGAELKWD 352 + NFFE RV+EYQ+ + D Sbjct: 295 KSNFFERRVSEYQKAGVMNAD 315 >gi|229827460|ref|ZP_04453529.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC 49176] gi|229788398|gb|EEP24512.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC 49176] Length = 354 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/321 (28%), Positives = 166/321 (51%), Gaps = 18/321 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA Y + NN W+P E+ + +D+ K + LT ER + + F +S+ Sbjct: 44 IKYDWANVMYRTMLNNFWIPEEISLGEDI---KQFSYLTAGERKAFDKIISFLNFLDSIQ 100 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 N+ + R+++ E L QAF+E +H+ ++ YI+ ++ + ++++ +RE P Sbjct: 101 CENLP-NLARYITAAEVASLLNVQAFQEEIHAQSYSYILDTVTNPVTRDKIYDEWREDPI 159 Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + + + A Y + PS + F++ + Y++ EG++FY+GF+ +L R Sbjct: 160 LLRRNKFIADMYQRFADDPS--------TENFVRSVMANYIL-EGIYFYSGFSFFYTLAR 210 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM + ++YI RDE HL ++I ++ ENP ++T E + + R M+ TL EI Sbjct: 211 QGKMTATSTIFKYINRDEITHLVLFQNIIRELMKENPEIFTDELKGELREMVKVGTLNEI 270 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332 + +G+N E+Y+++++N R IGL F + TENP W+ +L Sbjct: 271 EWGQYVTNNEILGINNELIERYIKYLSNLRLRAIGLPVWFPEITENPMAWIESFSNLNAT 330 Query: 333 K-NFFETRVTEYQQGAELKWD 352 K +FFE +VT Y + A +D Sbjct: 331 KTDFFEAKVTNYTKAAAFDFD 351 >gi|194036959|ref|XP_001925036.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Sus scrofa] Length = 351 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 101/338 (29%), Positives = 160/338 (47%), Gaps = 28/338 (8%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E ++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 23 SENEAKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---N 79 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 80 RLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYS 139 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 +I + D + LFN +P + KA+WAL++ D F + + Sbjct: 140 LLIDTYIRDPKQREFLFNAIETMPYVKKKADWALRW------------IADRKATFGERV 187 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 F V EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 188 VAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------ 240 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 +L K + + R ++ A +E + E +P G +G+N +QY++F+A+R ++G Sbjct: 241 -YLVNKPSEARVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTELGF 299 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 300 SKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 335 >gi|45360749|ref|NP_989048.1| ribonucleotide reductase M2, gene 1 [Xenopus (Silurana) tropicalis] gi|38174078|gb|AAH61353.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana) tropicalis] Length = 378 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 28/334 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + D+ +L +LP++Y W+ Y A + W EV + DL W++ L Sbjct: 52 KDPRIQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLPHWEA---L 108 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +ER I L FFA+S+ +V N+V + + E R + Q E +HS + + Sbjct: 109 KPEERYFISYVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 168 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + D E LFN +P + KA WAL++ +P F + + Sbjct: 169 IDTYIKDPKEREFLFNAIETLPCVKKKAEWALRWISDREAP------------FCERIVA 216 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F V EG++F FA I L + M G+ + I RDE LH +F + H Sbjct: 217 FAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFK-------H 268 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + K +Q+ R ++ +A +E + E +P +G+N +QY++F+A+R ++G + Sbjct: 269 VVHKPSEQRVREIIIDAVKIEQEFLTEALPVELIGMNCKLMKQYIEFVADRLLLELGFKK 328 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +FK +ENPF +M E I L+ + NFFE +V EYQ+ Sbjct: 329 IFK-SENPFDFM-ENISLEGKTNFFEKKVAEYQK 360 >gi|91081999|ref|XP_969259.1| PREDICTED: similar to AGAP006818-PA [Tribolium castaneum] gi|270007377|gb|EFA03825.1| hypothetical protein TcasGA2_TC013940 [Tribolium castaneum] Length = 374 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 94/317 (29%), Positives = 160/317 (50%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+KY A + W EV + DL WK+K L DER I L FFA+S+ Sbjct: 67 VFPIQYPDIWDKYKQAEASFWTTEEVDLSKDLDDWKNK--LNSDERYFISHVLAFFAASD 124 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + + E LFN Sbjct: 125 GIVNENLVERFSQEVQVTEARCFYGFQIAIENIHSEMYSMLIETYISEPQEKEFLFNAIE 184 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL + ++S + T G + V + EG++F FA I Sbjct: 185 TLPCVKKKADWALLW---INSKNATFGER----------IVAFAAVEGIFFSGSFASIFW 231 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + N M G+ + I RDE LH +F + + HL K +++ ++++ +A Sbjct: 232 LKKRNLMPGLTFSNELISRDEGLHCDFACLMFS-------HLVQKPSKERIQSIIQDAVK 284 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N QY++F+A+R ++G E ++ ++NPF +M+ +I + Sbjct: 285 IEKEFLTEALPVSMIGMNCALMCQYIEFVADRLLGELGCEKIYN-SQNPFDFMT-IISNE 342 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE +V EYQ+ Sbjct: 343 GKTNFFEKKVGEYQKSG 359 >gi|50286273|ref|XP_445565.1| hypothetical protein [Candida glabrata CBS 138] gi|49524870|emb|CAG58476.1| unnamed protein product [Candida glabrata] Length = 400 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/330 (30%), Positives = 152/330 (46%), Gaps = 27/330 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +LN D L P+KY W+ Y A + W E+ + DL W N L ++ER Sbjct: 75 DEPLLNDDPDRLTLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN--NRLNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEAVIPEAKAFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E LFN +P I KA WAL++ + + V + E Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIAN-------------SEALFAERLVAFAAIE 239 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 240 GVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLNHKPD 292 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + ++ EA +E Y + +P +G+NA QY++F+A+R G + ++ E Sbjct: 293 PEVVERIVTEAVEIEQRYFLDALPVALLGMNAQLMNQYVEFVADRLLVAFGNKKVYN-VE 351 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 NPF +M E I L + NFFE RV++YQ+ Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAG 380 >gi|313894221|ref|ZP_07827786.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441045|gb|EFR59472.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 342 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/320 (27%), Positives = 162/320 (50%), Gaps = 16/320 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ + R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +R + Sbjct: 89 SENLP-NLSRYITASEVASLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDEWRTDKT 147 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + A+ + Q S D + L + + EG++FY+GF+ +L R Sbjct: 148 LLARNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIYFYSGFSFFYTLARQ 199 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM + ++YI RDE HL ++I +++ E P L+T E ++K M+ + T EIA Sbjct: 200 GKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEEKITDMIRQGTENEIA 259 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333 + +GLN E+Y++++AN R IGL L+ + +NP W+ +L K Sbjct: 260 WGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNPMEWIESFSNLNSTK 319 Query: 334 -NFFETRVTEYQQGAELKWD 352 +FFE +VT Y + A +D Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339 >gi|225684487|gb|EEH22771.1| ribonucleoside-diphosphate reductase small chain A [Paracoccidioides brasiliensis Pb03] Length = 413 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 99/317 (31%), Positives = 154/317 (48%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L PLKY W+ Y A + W E+ + DL W N L DDER I L FFA+S+ Sbjct: 91 LFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 148 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 149 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAID 208 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ + D + F Q L F V EG++F FA I Sbjct: 209 TIPCIRKKADWAIRWIE------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFW 255 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + ++ H + E QK ++ EA Sbjct: 256 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLR----HRPSPEAVQK---IITEAVA 308 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G + ++ T NPF +M I L Sbjct: 309 IEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLT 366 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 367 GKTNFFEKRVGDYQKAG 383 >gi|145349720|ref|XP_001419276.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579507|gb|ABO97569.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 329 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/344 (28%), Positives = 161/344 (46%), Gaps = 37/344 (10%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +SP+ E ++ +D+R + P++Y WE Y A + W EV + DD+ Sbjct: 1 MSPLPLAEPLLDENDQRF--------TMFPIQYPQVWEMYKKAEASFWTAEEVDLSDDMK 52 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W++ LT DE+ + L FFA+S+ +V N+ + + PE R + Q E + Sbjct: 53 HWET---LTKDEKHFVSHVLAFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENI 109 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS + +I D E LF +P + KA+WAL++ D+ Sbjct: 110 HSEMYSLLIDQYIKDPVEKDHLFRAIDTIPCVKKKADWALKWI-------------DSSD 156 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 F + L F + EG++F F I L + M G+ + I RDE LH +F + + Sbjct: 157 SFAERLLAFACI-EGIFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLFS 215 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 + K ++ R ++ EA +E + +++P VG+NA Y++++A+ Sbjct: 216 MLN-------NKPSEETIRKIVTEAVEIEKEFVCDSLPCALVGMNAGMMSDYIEYVADHL 268 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +GL + T NPF WM E+I L+ + NFFE RV EYQ+ Sbjct: 269 FCSLGLAKEYN-TTNPFDWM-ELISLQGKTNFFEKRVGEYQKAG 310 >gi|227498392|ref|ZP_03928542.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21] gi|226903854|gb|EEH89772.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21] Length = 342 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/320 (28%), Positives = 162/320 (50%), Gaps = 16/320 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWANTLYRTMLNNFWIPEEISLNEDI---KQFPYLTDSERRAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++ + ++++ +R + Sbjct: 89 SENLP-NISRYITAPEVASLLNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDEWRTDST 147 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + + Q S + FL + Y++ EG++FY+GF+ +L R Sbjct: 148 LLERNRFIADAYQRFSDDP-------NEGNFLHTIVANYIL-EGIYFYSGFSFFYTLARQ 199 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM + ++YI RDE HL +++ +++ E P L+TKE M+ + EI Sbjct: 200 GKMTATSTIFKYINRDEVTHLILFQNILRELRHERPDLFTKEQDAHIADMIRQGAENEIK 259 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333 + +GLN E+Y++++AN R IGL PL+ + ++NP W+ +L K Sbjct: 260 WGQYITDDKILGLNNGLIEKYIKYLANIRLEAIGLAPLYPEISQNPMEWIESFSNLNGTK 319 Query: 334 -NFFETRVTEYQQGAELKWD 352 +FFE +VT Y + A +D Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339 >gi|303278144|ref|XP_003058365.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459525|gb|EEH56820.1| predicted protein [Micromonas pusilla CCMP1545] Length = 338 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/324 (29%), Positives = 156/324 (48%), Gaps = 29/324 (8%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 A S+ + P+KYG WE Y A + W EV + DD+ W+ L+DDE+ I L Sbjct: 20 AGSERFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMKHWEK---LSDDEKHFISHIL 76 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE-- 144 FFA+S+ +V N+ + + PE R + Q E +HS + +I + D + Sbjct: 77 AFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENIHSEMYSLLIDAYIKDAAQKK 136 Query: 145 -LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 LF +P + KA+WAL++ + SS +F + + + EG++F Sbjct: 137 YLFEAMENIPCVAKKADWALKWIE--SSATFA------------ERLIAFACIEGIFFSG 182 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 F I L + M G+ + I RDE LH +F + + +L K R Sbjct: 183 SFCSIYWLKKRGMMPGLTFSNELISRDEGLHRDFACLLYS-------YLQNKPDVSIVRQ 235 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 ++ EA +E + + +P VG+N +Y++F+A+ Q+GLE + T NPF +M Sbjct: 236 IVCEAVEIEKEFVCDALPVSLVGMNKDLMSEYIEFVADHLLGQLGLEKEYN-TVNPFEFM 294 Query: 324 SEVIDLKKEKNFFETRVTEYQQGA 347 E+I L+ + NFFE RV EYQ+ Sbjct: 295 -ELISLQGKTNFFEKRVGEYQKSG 317 >gi|119174781|ref|XP_001239725.1| hypothetical protein CIMG_09346 [Coccidioides immitis RS] Length = 408 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 152/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L PLKY W+ Y A + W E+ + DL W + L DDER I R L FFA+S+ Sbjct: 89 LFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNHR--LNDDERYFISRVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 147 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAID 206 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D + F Q L F V EG++F FA I Sbjct: 207 TIPCIRKKADWAIRWIQ------------DQESTFAQRLIAFAAV-EGIFFSGSFASIFW 253 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + + + ++ EA Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLRHRPGPEAVQAIITEAVE 306 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ QY++F+A+R +G + + T NPF +M I L Sbjct: 307 IEKEFLTDALPCALLGMNSKLMCQYIEFVADRLLVALGNKKFYNAT-NPFDFMDN-ISLS 364 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 365 GKTNFFEKRVGDYQKAG 381 >gi|326917964|ref|XP_003205263.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like [Meleagris gallopavo] Length = 353 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 157/317 (49%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++ W+ Y A + W EV + DL W N L DE+ I L FFA+S+ Sbjct: 46 IFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLKPDEKYFISHILAFFAASD 102 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E VHS + +I + D + LFN Sbjct: 103 GIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEMYSLLIDTYIKDPEKRDFLFNAIE 162 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL++ + S T G + V + EG++F FA I Sbjct: 163 TMPCVKKKADWALKWIEDRHS---TFGER----------VVAFAAVEGIFFSGSFAAIFW 209 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + +L + +++ R ++ A Sbjct: 210 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFH-------YLVNRPSEERVREIIVNAVE 262 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P G +G+N +QY++F+A+R ++G +F + ENPF +M E I L+ Sbjct: 263 IEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLMELGFSKVF-HAENPFDFM-ENISLE 320 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV+EYQ+ A Sbjct: 321 GKTNFFEKRVSEYQRFA 337 >gi|126322530|ref|XP_001380256.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 361 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 158/317 (49%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W N L DE+ I L FFA+S+ Sbjct: 54 IFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLKSDEKYFISHILAFFAASD 110 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E +HS + +I + D + LFN Sbjct: 111 GIVNENLVERFSQEVQVPEARCFYGFQILIENIHSEMYSLLIDTYIKDPQKREFLFNAIE 170 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WALQ+ S T G + V + EG++F FA I Sbjct: 171 TMPCVKRKADWALQWIADRKS---TFGER----------VVAFAAVEGIFFSGSFAAIFW 217 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + +L K +++ + ++ A Sbjct: 218 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFH-------YLVNKPSEERVKEIIINAVE 270 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P G +G+N+ +QY++F+A+R ++G +F+ ++NPF +M E I L+ Sbjct: 271 IEQEFLTDALPVGLIGINSTLMKQYIEFVADRLLVELGFSKVFQ-SDNPFDFM-ENISLE 328 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV+EYQ+ A Sbjct: 329 GKTNFFEKRVSEYQRFA 345 >gi|303314521|ref|XP_003067269.1| ribonucleoside-diphosphate reductase small chain, putative [Coccidioides posadasii C735 delta SOWgp] gi|240106937|gb|EER25124.1| ribonucleoside-diphosphate reductase small chain, putative [Coccidioides posadasii C735 delta SOWgp] gi|320037571|gb|EFW19508.1| ribonucleoside-diphosphate reductase small subunit [Coccidioides posadasii str. Silveira] Length = 408 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 152/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L PLKY W+ Y A + W E+ + DL W + L DDER I R L FFA+S+ Sbjct: 89 LFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNHR--LNDDERYFISRVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 147 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAID 206 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D + F Q L F V EG++F FA I Sbjct: 207 TIPCIRKKADWAIRWIQ------------DQESTFAQRLIAFAAV-EGIFFSGSFASIFW 253 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + + + ++ EA Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLRHRPGPEAVQAIITEAVE 306 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ QY++F+A+R +G + + T NPF +M I L Sbjct: 307 IEKEFLTDALPCALLGMNSKLMCQYIEFVADRLLVALGNKKFYNAT-NPFDFMDN-ISLS 364 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 365 GKTNFFEKRVGDYQKAG 381 >gi|290995765|ref|XP_002680453.1| predicted protein [Naegleria gruberi] gi|284094074|gb|EFC47709.1| predicted protein [Naegleria gruberi] Length = 338 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/316 (30%), Positives = 157/316 (49%), Gaps = 28/316 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L PL Y WE Y + W EV + D+ W+ L +E+ IK L FFA+S+ Sbjct: 31 LFPLHYPKMWEMYKKTMASFWTVEEVDLHTDITEWEK---LNSNEQHFIKTVLAFFAASD 87 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +H+ + +I +L D+ E LF+ Sbjct: 88 GIVNENLCQQFMAQVQVPEARCFYGFQIAIENIHAEMYSTLIETLIKDQRERNRLFHAID 147 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VPS+ KANWAL++ +++ F + L F V EG++F F I Sbjct: 148 TVPSVQKKANWALKWI-------------NSENLFAERLLAFACV-EGIFFSGSFCSIFW 193 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G++ + I RDE LH +F + + +K +TK QQ ++++EA Sbjct: 194 LKKRGLMPGLSFSNELISRDEGLHTDFACLLYSTLK------YTKLPQQVVHSLVYEAVE 247 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E++P +G+N+ +QY++ +A+R IG E ++ + NPF WM+ +I + Sbjct: 248 IEKEFISESLPVDLIGMNSRLMQQYIEMVADRLLVSIGYEKIYN-SSNPFDWMN-IISVS 305 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE +V EY + Sbjct: 306 GKTNFFEKKVGEYAKA 321 >gi|163781846|ref|ZP_02176846.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1] gi|159883066|gb|EDP76570.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1] Length = 350 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 179/338 (52%), Gaps = 19/338 (5%) Query: 21 DKRMLNAR-SDVNQLLPLKYGWAWEKYLS-ACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++R++N +++ +L +KY WA++ Y + +N W+P E+P+ +D ++ L+D E Sbjct: 25 NRRIINGNPTNIIELNNIKYPWAFDLYKTMGFSNFWIPEEIPLMEDKKQYER--VLSDYE 82 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R + L F + +S + ++ R +S PE L Q F+E++H++++Q+I+ S+ Sbjct: 83 RRAYELVLSFLIALDSFQVD-MLKDFARMISAPEVEMALTAQEFQESIHAYSYQFILESV 141 Query: 139 --GLDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 + E++N +RE + + + Y + + PS ++ F++ + Y++ Sbjct: 142 VDPIKADEIYNYWREDEKLKERNEVVAEVYNEFIRKPS--------EENFIKAVIGNYIL 193 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 E ++FY+GFA +LGR KM +Q +YI RDE H+ ++I ++ E P L++ Sbjct: 194 -ESLYFYSGFAFFYTLGRQGKMTNTVQQIKYINRDELTHVTLFRNMILNLQKEQPELFSP 252 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-K 314 E ++ A EI + +G+N ++Y++++ N R QIGLEPL+ + Sbjct: 253 EIKKWIAEYFRYAIDQEIKWGQYVTQDQILGINNQLIDRYIKYLGNLRITQIGLEPLYPE 312 Query: 315 YTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKW 351 TENP W+ + + K +FF+ + Y + ELKW Sbjct: 313 ITENPMKWIDDFRKINNTKTDFFQRKPQTYAKANELKW 350 >gi|310798394|gb|EFQ33287.1| ribonucleotide reductase [Glomerella graminicola M1.001] Length = 413 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 155/317 (48%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W +K + +DE+ I L FFA+S+ Sbjct: 92 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNNK--INEDEKYFISHILAFFAASD 149 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LFN Sbjct: 150 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPAQRTYLFNAID 209 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WAL++ D F Q L F V EG++F FA I Sbjct: 210 TIPCIRKKADWALKWIS------------DEKSSFAQRLVAFAAV-EGIFFSGAFASIFW 256 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +Q + ++ +A Sbjct: 257 LKKRGLMPGLTFSNELISRDEGLHTDFACLLYS-------HLKNRPSKQVIQDIIVDAVQ 309 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N+ +QY++F+A+R +G + ++K + NPF +M E I L Sbjct: 310 IEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALGNDKVYK-SSNPFDFM-ENISLG 367 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 368 GKTNFFEKRVADYQKAG 384 >gi|319942042|ref|ZP_08016361.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella wadsworthensis 3_1_45B] gi|319804426|gb|EFW01304.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella wadsworthensis 3_1_45B] Length = 344 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 154/317 (48%), Gaps = 26/317 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E ++ + HW+ TEVPM +D+ ++ K LTD ER + + L FF + Sbjct: 35 PFQYPWAYEAFMQSEQMHWLWTEVPMLEDVKDYQQK--LTDSERDFLTKILRFFTQGDID 92 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V+ V + PE R L A EAVH + ++I +LGL E ++N + + ++ Sbjct: 93 VSGAYVNSYLPRFKQPEVRMMLSSFAAREAVHIAAYSHLIETLGLPES-IYNEFLQYEAM 151 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 AK ++ F +D + + F EGM ++ F +L+ R Sbjct: 152 AAKHDF------------FNEVCRDKG-DLAAQIAAFSAFTEGMQLFSSFVMLLNFTRCG 198 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EATL 270 M G+ + + + DE+LH + + ENP LWT E + K + M+ E Sbjct: 199 TMKGMGQIIAWSIADETLHTESMTKIFREYITENPELWTDELKAKIYGIAEVMVDLEDKF 258 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +++A+ M + L Y+++IA+RR +GL+ +FK T NP PW+ ++ + Sbjct: 259 IDLAFGVSEMKR----LTREDVRSYIRYIADRRLMGLGLKGIFKSTTNPLPWVDAMLGV- 313 Query: 331 KEKNFFETRVTEYQQGA 347 NFFE RV +Y +GA Sbjct: 314 THTNFFENRVVDYAKGA 330 >gi|254572986|ref|XP_002493602.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR) complex [Pichia pastoris GS115] gi|238033401|emb|CAY71423.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR) complex [Pichia pastoris GS115] gi|328354568|emb|CCA40965.1| ribonucleoside-diphosphate reductase subunit M2 [Pichia pastoris CBS 7435] Length = 400 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 152/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L PLKY W+ Y A + W E+ + DL W N + D+E+ I R L FFA+S+ Sbjct: 88 LFPLKYHDIWQMYKQAEASFWTAEEIDLGKDLHDWN--NRMNDNEKFFISRVLAFFAASD 145 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 146 GIVNENLVENFSAEVQLPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKESEFLFNAIE 205 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ D D F + L F V EG++F FA I Sbjct: 206 TIPCIKEKADWAMRWIS------------DDDALFAERLVAFAAV-EGIFFSGSFASIFW 252 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ ++ EA Sbjct: 253 LKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLNNRASEEIVEKIITEAVE 305 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E Y + +P +G+N QY++F+A+R +G + ++ NPF +M E I L Sbjct: 306 IEKRYFTDALPVSLLGMNCSLMCQYVEFVADRLLVALGNKKVYN-VNNPFDFM-ENISLA 363 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 364 GKTNFFEKRVSDYQKAG 380 >gi|72008642|ref|XP_780110.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I isoform 1 [Strongylocentrotus purpuratus] gi|115928579|ref|XP_001179668.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I [Strongylocentrotus purpuratus] Length = 412 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 108/351 (30%), Positives = 173/351 (49%), Gaps = 34/351 (9%) Query: 2 ANNTGLSPIQAGEKRV--NVDDKRML--NARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 A + + P +G+K V N +D+ +L NAR V + P++Y W+ Y A + W Sbjct: 66 AKSKLVKPENSGKKVVSFNKEDEPLLRENARRFV--IFPIQYHDIWQFYKKAEASFWTAE 123 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV + DL W + L D+ER I L FFA+S+ +V N+V + + E R + Sbjct: 124 EVDLSKDLDHWAN---LKDEERHFISHVLAFFAASDGIVNENLVERFSQEVQVAEARCFY 180 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +HS + +I + D + LFN +P +T KA WAL + + S S Sbjct: 181 GFQIAIENIHSEMYSLLIDTYIKDSVQRDFLFNAVETLPCVTKKAQWALNW---IGSDSA 237 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 GT+ V + EG++F FA I L + M G+ + I RDE LH Sbjct: 238 DFGTR----------IVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLH 287 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 +F + HL K ++ + ++ EA +E + + +P +G+NA ++ Sbjct: 288 CDFACLMFK-------HLNNKPDEEHVQGIIKEAVAIEQEFLTDALPCSLIGMNAVLMKR 340 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 Y++F+A+R ++G ++K ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 341 YIEFVADRLLVELGCGKIWK-VENPFDFM-ENISLEGKTNFFEKRVGEYQK 389 >gi|241166485|ref|XP_002409876.1| ribonucleotide reductase, beta subunit, putative [Ixodes scapularis] gi|215494664|gb|EEC04305.1| ribonucleotide reductase, beta subunit, putative [Ixodes scapularis] Length = 376 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/317 (30%), Positives = 155/317 (48%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DL W +GL +ER I L FFA+S+ Sbjct: 69 MFPIVYEDIWRMYKKAEASFWTVEEVDLGKDLPHW---DGLKPEERHFISHILAFFAASD 125 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 126 GIVNENLVERFSQEVQVTEARCFYGFQMAIENVHSEMYSLLIDTYIKDPSERDRLFNAVE 185 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WAL + +S+ S T G + V + EG++F FA I Sbjct: 186 TMPCIKRKADWALNW---ISNRSATFGER----------IVAFAAVEGIFFSGSFASIFW 232 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL K Q + R ++ +A + Sbjct: 233 LKKRGLMPGLTFSNELISRDEGLHTDFACLMFS-------HLVNKPSQARVRQIICDAVV 285 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N ++Y++F+A+R ++G E ++ +ENPF +M E I L+ Sbjct: 286 IEQEFLTDALPVALIGMNCELMKRYIEFVADRLLVELGCEKVYN-SENPFDFM-EHISLE 343 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ Sbjct: 344 GKTNFFEKRVGEYQKAG 360 >gi|255536887|ref|XP_002509510.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] gi|223549409|gb|EEF50897.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] Length = 329 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 96/332 (28%), Positives = 157/332 (47%), Gaps = 29/332 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + ++ +L D + P++Y WE Y A + W EV + DL W+S LT DE Sbjct: 4 IPEEPLLAPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDLRHWES---LTPDE 60 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + I L FFA+S+ +V N+ + + E R + Q E +HS + ++ + Sbjct: 61 KHFISHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLETY 120 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D E LF+ VP I KA WAL++ D + F + + F V Sbjct: 121 IKDSNEKNRLFHAIETVPCIAKKAEWALKWI-------------DGSESFAERIIAFACV 167 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F F I L + M G+ + I RDE LH +F + + +K K Sbjct: 168 -EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLK-------KK 219 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +++ + ++ +A +E + + +P VG+N QY++F+A+R +G + Sbjct: 220 LSEERVKGIVRDAVNIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGCGKEYNV 279 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 + NPF WM E+I L+ + NFFE RV EYQ+ A Sbjct: 280 S-NPFDWM-ELISLQGKTNFFEKRVGEYQKAA 309 >gi|89890041|ref|ZP_01201552.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria bacterium BBFL7] gi|89518314|gb|EAS20970.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria bacterium BBFL7] Length = 330 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/329 (27%), Positives = 162/329 (49%), Gaps = 32/329 (9%) Query: 24 MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D + P+++ W W K AC W E+ +Q D+ W+ N L DER Sbjct: 8 ILQENPDRFVIFPIQHDDLWEWYKKQQAC--IWTAEEIDLQVDITDWQ--NSLNSDERYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGELFNMYREV---PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E ++R + P+I KA+WA+++ + SPSF + + + EG Sbjct: 124 DAEKDQLFRAIENFPAIKLKADWAMKW---IESPSFA------------ERLIAFAAVEG 168 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + N HL K + Sbjct: 169 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGMHCDFA------VHLHNHHLVNKVPK 222 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ ++ +A +E + E++P +G+NA QY++F+ +R ++ +P++ T N Sbjct: 223 ERITEIIVDALNIEREFITESLPASLIGMNAKLMTQYLEFVTDRLLGELECDPVYNVT-N 281 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 PF +M ++I ++ + NFFE RV EYQ+ Sbjct: 282 PFDFM-DLIGMEGKTNFFEKRVGEYQKAG 309 >gi|322510876|gb|ADX06189.1| putative ribonucleotide reductase small subunit [Organic Lake phycodnavirus 2] Length = 324 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 153/313 (48%), Gaps = 28/313 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ W+ Y + W P E+ D+ W N L DE+ IK L FFASS+ Sbjct: 19 MFPVSDETIWKMYKKQVDCFWRPEEIDTSKDMTHW---NKLNTDEQYFIKMILAFFASSD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ L + E R + Q E +HS T+ +I S D E LF+ Sbjct: 76 GIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDSYIKDSDEKHKLFHSLE 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 P I K +WA+++ Q S SF T V + EG++F F I Sbjct: 136 HFPCIKKKGDWAMKWIQDKKS-SFATR------------LVAFACVEGIFFSGAFCSIYW 182 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE+LH F + + N+++ K ++K R ++ EA Sbjct: 183 LKKRGLMPGLTFSNELISRDEALHTEFAVYLYNRLE-------KKLNKKKVREIIEEAVT 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ QY++F+A+R Q+G + ++ T NPF +M E+I L+ Sbjct: 236 IEKEFIVDALPCRMIGMNSELMTQYIEFVADRLMMQLGCDVIYA-TNNPFDFM-ELISLE 293 Query: 331 KEKNFFETRVTEY 343 ++ NFFE+RV+EY Sbjct: 294 QKTNFFESRVSEY 306 >gi|145249942|ref|XP_001401310.1| ribonucleoside-diphosphate reductase small chain [Aspergillus niger CBS 513.88] gi|134081995|emb|CAK46680.1| unnamed protein product [Aspergillus niger] Length = 396 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/317 (30%), Positives = 152/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDER I L FFA+S+ Sbjct: 80 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWH--NRLNDDERYFISHVLAFFAASD 137 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 138 GIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAID 197 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D + F Q L F V EG++F FA I Sbjct: 198 TIPCIAKKADWAIKWIQ------------DRESTFAQRLVAFAAV-EGIFFSGSFASIFW 244 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +Q ++ EA Sbjct: 245 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPSKQVVEDIIVEAVG 297 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ QY++F+A+R +G + + T NPF +M E I L Sbjct: 298 IEQEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYYNAT-NPFDFM-ESISLA 355 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 356 GKTNFFEKRVGDYQKAG 372 >gi|7106399|ref|NP_033130.1| ribonucleoside-diphosphate reductase subunit M2 [Mus musculus] gi|132626|sp|P11157|RIR2_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|22218698|pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State gi|22218699|pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State gi|52696260|pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase Subunit R2 Under Oxidizing Conditions. A Fully Occupied Dinuclear Iron Cluster. gi|52696261|pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase Subunit R2 Under Reducing Conditions. A Fully Occupied Dinuclear Iron Cluster And Bound Acetate. gi|157834262|pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse gi|50720|emb|CAA33707.1| M2 ribonucleotide reductase [Mus musculus] gi|200768|gb|AAA40062.1| ribonucleotide reductase subunit M2 [Mus musculus] gi|26354034|dbj|BAC40647.1| unnamed protein product [Mus musculus] gi|54887418|gb|AAH85136.1| Ribonucleotide reductase M2 [Mus musculus] gi|74139292|dbj|BAE40793.1| unnamed protein product [Mus musculus] gi|74151119|dbj|BAE27683.1| unnamed protein product [Mus musculus] gi|74179887|dbj|BAE36508.1| unnamed protein product [Mus musculus] gi|74188932|dbj|BAE39238.1| unnamed protein product [Mus musculus] gi|74189151|dbj|BAE39331.1| unnamed protein product [Mus musculus] gi|74206394|dbj|BAE24918.1| unnamed protein product [Mus musculus] gi|74211991|dbj|BAE40165.1| unnamed protein product [Mus musculus] Length = 390 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L D Sbjct: 67 SVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPD 123 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 124 ERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDT 183 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + V + Sbjct: 184 YIKDPKEREYLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 230 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 231 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 283 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +Q+ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+ Sbjct: 284 KPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFR 343 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 344 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 372 >gi|327269406|ref|XP_003219485.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like [Anolis carolinensis] Length = 414 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 154/317 (48%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W+ Y A + W EV + D W N L +E+ I L FFA+S+ Sbjct: 107 IFPIHYPDIWKMYKKAQASFWTAEEVDLSKDFPHW---NKLKSEEKYFISHILAFFAASD 163 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E VHS + +I + D E LFN Sbjct: 164 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIKDPEERDFLFNAIE 223 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL++ +D F + + F V EG++F FA I Sbjct: 224 TMPCVKKKADWALRWI------------RDRKATFGERVVAFASV-EGIFFSGAFAAIFW 270 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + +L K +++ R ++ A Sbjct: 271 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ-------YLVNKPSEERVREIIVNAVE 323 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P G +G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ Sbjct: 324 IEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLLELGFSKVFQ-AENPFDFM-ENISLE 381 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV+EYQ+ A Sbjct: 382 GKTNFFEKRVSEYQRFA 398 >gi|258567064|ref|XP_002584276.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus reesii 1704] gi|237905722|gb|EEP80123.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus reesii 1704] Length = 401 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 149/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L PLKY W+ Y A + W E+ + DL W + L DDER I R L FFA+S+ Sbjct: 82 LFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNHR--LNDDERYFISRVLAFFAASD 139 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LF Sbjct: 140 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFEALD 199 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D D F Q L F V EG++F FA I Sbjct: 200 NIPCIRKKADWAIRWIQ------------DKDSTFAQRLIAFAAV-EGIFFSGSFASIFW 246 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + H+ + ++ EA Sbjct: 247 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HIRHRPTPAAVEAIITEAVE 299 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ QY++F+A+R +G + + T NPF +M I L Sbjct: 300 IEKEFLTDALPCALLGMNSKLMCQYIEFVADRLLVALGNKKFYHAT-NPFDFMDN-ISLA 357 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 358 GKTNFFEKRVGDYQKAG 374 >gi|212723480|ref|NP_001131892.1| hypothetical protein LOC100193273 [Zea mays] gi|194692834|gb|ACF80501.1| unknown [Zea mays] gi|195624040|gb|ACG33850.1| ribonucleoside-diphosphate reductase small chain [Zea mays] Length = 339 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 93/327 (28%), Positives = 156/327 (47%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L SD + P+++ WE Y A + W EV + D W L+ DER I Sbjct: 17 LLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWD--EALSPDERHFIS 74 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E R + Q E +HS + ++ + D+ Sbjct: 75 HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDV 134 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF VP++ KA+WA+++ D + F + L F V EG++ Sbjct: 135 EKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 180 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ +K + + Sbjct: 181 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDVLR-------SKLDEAR 233 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 RT++ +A +E + + +P VG+N QY++F+A+R +G + ++ T NPF Sbjct: 234 VRTIVADAVDIEREFVCDALPVSLVGMNGDLMSQYIEFVADRLLMALGCKKMYNVT-NPF 292 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV +YQ+ + Sbjct: 293 DWM-ELISLQGKTNFFEKRVGDYQKAS 318 >gi|148705043|gb|EDL36990.1| ribonucleotide reductase M2 [Mus musculus] Length = 411 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L D Sbjct: 88 SVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPD 144 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 145 ERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDT 204 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + V + Sbjct: 205 YIKDPKEREYLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 251 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 252 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 304 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +Q+ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+ Sbjct: 305 KPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFR 364 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 365 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 393 >gi|74207686|dbj|BAE40088.1| unnamed protein product [Mus musculus] Length = 390 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L D Sbjct: 67 SVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPD 123 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 124 ERHFISHALAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDT 183 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + + + F Sbjct: 184 YIKDPKEREYLFNAIETMPCVKKKADWALRWI----------GDKEAT--YGERVMAFAA 231 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 V EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 232 V-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 283 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +Q+ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+ Sbjct: 284 KPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFR 343 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 344 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 372 >gi|225850104|ref|YP_002730338.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella marina EX-H1] gi|225645787|gb|ACO03973.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella marina EX-H1] Length = 329 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 154/308 (50%), Gaps = 6/308 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y E Y W P E+ +Q D+ +KS LT E+ + ++G+FASSE LV Sbjct: 23 RYPVFKEIYTKQKKAVWFPEELNIQQDVLDYKS---LTPTEKDLFDTSVGYFASSELLVQ 79 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 N + + L++P + Q F E +HS F+ I+ + +D ++N+ E + Sbjct: 80 NVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNTFEMDRKRIYNITLEDKLLME 139 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ ++ T + ++ L + + ++ EGM+FY+ FA ++ KM Sbjct: 140 KQELIIRAVDRITYGKADPDTLEGKKQILTAILLNNIIQEGMFFYSAFAHFFAMKDTGKM 199 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYA 276 + + I+ DESLHL GI+ I I ENP + E F + + + +A LE+ Y Sbjct: 200 KNVVSGVELILIDESLHLQNGIEAILTIVEENPEIVDDEKFVENIKETIIDAVELELNYL 259 Query: 277 HETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 + G++ E+YM++IA+RR ++G +P FK +NP ++ + D+KK NF Sbjct: 260 KTKFGGTTIFGVSYKELEKYMKYIADRRLEELGFDPQFKIDQNPLKFLQKE-DVKKLTNF 318 Query: 336 FETRVTEY 343 FE TEY Sbjct: 319 FEVSSTEY 326 >gi|290977320|ref|XP_002671386.1| predicted protein [Naegleria gruberi] gi|284084954|gb|EFC38642.1| predicted protein [Naegleria gruberi] Length = 338 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 95/316 (30%), Positives = 156/316 (49%), Gaps = 28/316 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L PL+Y WE Y A + W EV + D+ W + LT +E+ IK L FFA+S+ Sbjct: 31 LFPLEYPKIWEMYKKAMASFWTAEEVDLHTDITQWTT---LTPNEQHFIKSVLAFFAASD 87 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +H+ + +I +L D+ E LFN Sbjct: 88 GIVNENLCQQFMAEVQIPEARCFYGFQIAIENIHAEMYSTLIETLIKDQRERHRLFNAID 147 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VPS+ KA WA+++ + F + L F V EG++F F I Sbjct: 148 TVPSVQKKARWAMKWINN-------------ENLFAERLLAFACV-EGIFFSGSFCSIFW 193 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+A + I RDE LH +F + + +K +TK QQ +++ EA Sbjct: 194 LKKRGLMPGLAFSNELISRDEGLHTDFACLLYSTLK------FTKLPQQVVHSLVSEAVE 247 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E++P +G+N+ +QY++ +A+R +G + ++ + NPF WM+ +I + Sbjct: 248 IEKEFICESLPVDLIGMNSRLMQQYIEMVADRLLVSLGYDKIYN-SPNPFDWMN-IISVS 305 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE +V EY + Sbjct: 306 GKTNFFEKKVGEYAKA 321 >gi|145553335|ref|XP_001462342.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124430181|emb|CAK94969.1| unnamed protein product [Paramecium tetraurelia] Length = 355 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 101/348 (29%), Positives = 165/348 (47%), Gaps = 31/348 (8%) Query: 5 TGLSPIQAGEKRVNVD--DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T LS +QA + +N + D+ +L + L P+KY W Y + W E+ + Sbjct: 18 TPLSNVQASQTVLNQNYCDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLY 77 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W+ LT DE+ IK L FFA+S+ +V N+ + PE R + Q Sbjct: 78 QDLKDWEK---LTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIA 134 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E +HS T+ +I + DE E L + VP I KA WA+++ Sbjct: 135 MENIHSETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKWI------------- 181 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + + F + L F V EG++F F I + + + M G+ + I RDE LH +F Sbjct: 182 NENDSFAERLIAFAAV-EGIFFSGSFCAIFWIKKRSLMPGLTFSNELISRDEGLHTDFAC 240 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + HL K Q+ ++ A +E + E +P +G+N+ +QY++F+ Sbjct: 241 -------LLYKHLVNKMSNQRIHEIISSAVEIEKEFISEALPVELIGMNSNLMKQYIEFV 293 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 A+R +G ++ ++NPF WM ++I L+ + NFFE RV +YQ+ Sbjct: 294 ADRLIFALGAPKIYN-SKNPFEWM-DMISLQGKTNFFERRVGDYQKAG 339 >gi|301772278|ref|XP_002921557.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Ailuropoda melanoleuca] Length = 393 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 70 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 126 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 127 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 186 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + V + Sbjct: 187 YIKDSKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 233 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 234 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 286 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +Q+ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+ Sbjct: 287 KPSEQRVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 346 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 347 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 375 >gi|328872436|gb|EGG20803.1| ribonucleotide reductase small subunit [Dictyostelium fasciculatum] Length = 335 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/330 (29%), Positives = 158/330 (47%), Gaps = 28/330 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L P+KY W Y A + W E+ + D+ W++K L D+ER IK Sbjct: 9 LLKENKDRFVLFPIKYTDIWNMYKKAEASFWTAEEIDLASDVNEWENK--LNDNERHFIK 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + + Sbjct: 67 NVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIKNPD 126 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P + KA+WAL++ S F + L F V EG++ Sbjct: 127 EKKVLFNAIETIPCVKKKADWALRWITNSKS-------------FAERLVAFAAV-EGIF 172 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + N++ N L K + Sbjct: 173 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYNKL---NNKLDVKTIE-- 227 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 +++ +A E + +++P +G+N+ +Y++F A+R +G + ++ + NPF Sbjct: 228 --SIIRDAVECEKEFVTDSLPVDLIGMNSREMSKYIEFCADRLLVSLGYKKIYN-SANPF 284 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 WM E+I L ++ NFFE +V+EY + K Sbjct: 285 DWM-EMISLMRKANFFEGKVSEYAKAGVAK 313 >gi|294794440|ref|ZP_06759576.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 3_1_44] gi|294454770|gb|EFG23143.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 3_1_44] Length = 342 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/320 (27%), Positives = 161/320 (50%), Gaps = 16/320 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ + ++++ +R + Sbjct: 89 SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDEWRTDKT 147 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + + Q S D + L + + EG++FY+GF+ +L R Sbjct: 148 LLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIYFYSGFSFFYTLARQ 199 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM + ++YI RDE HL ++I +++ E P L+T E + K M+ + T EIA Sbjct: 200 GKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAKITDMIRQGTENEIA 259 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333 + +GLN E+Y++++AN R IGL L+ + +NP W+ +L K Sbjct: 260 WGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNPMEWIESFSNLNSTK 319 Query: 334 -NFFETRVTEYQQGAELKWD 352 +FFE +VT Y + A +D Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339 >gi|315041979|ref|XP_003170366.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma gypseum CBS 118893] gi|311345400|gb|EFR04603.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma gypseum CBS 118893] Length = 408 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 149/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ W N L DDER I L FFA+S+ Sbjct: 89 LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + ++ + LF Sbjct: 147 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 206 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D D F Q L F V EG++F FA I Sbjct: 207 TIPCIRKKADWAIRWIQ------------DKDSTFAQRLVAFAAV-EGIFFSGSFASIFW 253 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ EA Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNHRPEPSAVEAIITEAVT 306 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G + + T NPF +M I L Sbjct: 307 IEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKFYN-TTNPFDFMDN-ISLA 364 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 365 GKTNFFEKRVGDYQKAG 381 >gi|153940168|ref|YP_001392091.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum F str. Langeland] gi|170756361|ref|YP_001782419.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum B1 str. Okra] gi|152936064|gb|ABS41562.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum F str. Langeland] gi|169121573|gb|ACA45409.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum B1 str. Okra] gi|322807123|emb|CBZ04697.1| ribonucleotide reductase of class Ia (aerobic),beta subunit [Clostridium botulinum H04402 065] Length = 342 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 90/321 (28%), Positives = 166/321 (51%), Gaps = 18/321 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDEH 147 Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + + + A Y + P FL+ + Y++ EG++FY+GF+ +L R Sbjct: 148 LLERNKFIAGIYEKFNKEPEI--------HNFLRAIMANYIL-EGIYFYSGFSFFYTLAR 198 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM + ++YI RDE HL ++I ++K EN H++T+E +++ R M+ EI Sbjct: 199 QGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEEFRQMMRMGVEHEI 258 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332 + +GLN E+Y+++++N R IGL+PL+ + ++P W+ L Sbjct: 259 QWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYPEINKHPMEWIDSFSKLNST 318 Query: 333 K-NFFETRVTEYQQGAELKWD 352 K +FFE +VT Y + A +D Sbjct: 319 KTDFFEAKVTNYTKAAAFDFD 339 >gi|157803769|ref|YP_001492318.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia canadensis str. McKiel] gi|157785032|gb|ABV73533.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia canadensis str. McKiel] Length = 324 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 160/319 (50%), Gaps = 28/319 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYDAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y + P ++ AF E +H + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETIHIAAYSHLLDTVGMPEVE-YSAFLKYK 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ Q+ D ++ L VF EG+ + FA +L+ R Sbjct: 127 EMKDKYDYMQQFGV------------DTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EA 268 NKM G+ + + +RDE+LH N I + ENP +WT+ +++ T++H E Sbjct: 175 FNKMKGMGQVIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYGACTTIVHFED 234 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +E+A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ Sbjct: 235 AFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLN 290 Query: 329 LKKEKNFFETRVTEYQQGA 347 + NFFE R TEY + A Sbjct: 291 GVEHTNFFENRATEYSKAA 309 >gi|172448|gb|AAA34987.1| ribonucleotide reductase subunit 2 (RNR2) [Saccharomyces cerevisiae] Length = 399 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 154/327 (47%), Gaps = 27/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y ++ E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYEASFWTAETAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA WAL++ Q DAD F + L F + EG++ Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPDPAI 295 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K ENPF Sbjct: 296 VEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VENPF 354 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M E I L + NFFE RV++YQ+ Sbjct: 355 DFM-ENISLAGKTNFFEKRVSDYQKAG 380 >gi|159465835|ref|XP_001691128.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas reinhardtii] gi|158279814|gb|EDP05574.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas reinhardtii] Length = 394 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 97/335 (28%), Positives = 159/335 (47%), Gaps = 29/335 (8%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R + ++ +L+ D + P+KY WE Y A + W EV + DD+ W+ L+ Sbjct: 68 RKRMLEEPLLDENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLGDDMKHWEK---LS 124 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 D ER I L FFA+S+ +V N+ + + + PE R + Q E +HS + ++ Sbjct: 125 DGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVAIENIHSEMYSLLL 184 Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 S D E LF+ VP I KA WA+++ +D F + L F Sbjct: 185 ESYIKDPQEKHKLFHSIETVPCIKKKAQWAMKWI-------------GSDSVFSERLVAF 231 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 V EG++F F I L + M G+ + I RDE LH +F + + + Sbjct: 232 AAV-EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACMLFSMLN------ 284 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 T+ + + + ++ EA +E + E +P +G+N+ QY+QF+A+R +G Sbjct: 285 -TRIDETRVKQIIVEAVEIEQEFCTEALPVDLIGMNSRLMAQYIQFVADRLLVSLGCAKQ 343 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 + NPF +M E+I L+ + NFFE RV +YQ+ Sbjct: 344 YNVV-NPFEFM-EMISLQGKTNFFEKRVGDYQKNG 376 >gi|115387427|ref|XP_001211219.1| ribonucleoside-diphosphate reductase small chain [Aspergillus terreus NIH2624] gi|114195303|gb|EAU37003.1| ribonucleoside-diphosphate reductase small chain [Aspergillus terreus NIH2624] Length = 401 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 98/317 (30%), Positives = 151/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L +DER I L FFA+S+ Sbjct: 84 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNEDERYFISHVLAFFAASD 141 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 142 GIVNENLVERFSGEVQIPEARCFYGFQIMIENIHSETYSLLIDTYIKEPKQRTYLFDAID 201 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D + F Q L F V EG++F FA I Sbjct: 202 NIPCIAKKADWAIKWIQ------------DQESTFGQRLVAFAAV-EGIFFSGSFASIFW 248 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +Q ++ EA Sbjct: 249 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPSKQVVEDIIVEAVA 301 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ QY++F+A+R +G F T NPF +M E I L Sbjct: 302 IEKEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNNKYFHST-NPFDFM-ESISLA 359 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 360 GKTNFFEKRVGDYQKAG 376 >gi|114327552|ref|YP_744709.1| ribonucleotide-diphosphate reductase subunit beta [Granulibacter bethesdensis CGDNIH1] gi|114315726|gb|ABI61786.1| ribonucleoside-diphosphate reductase beta chain [Granulibacter bethesdensis CGDNIH1] Length = 339 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 91/321 (28%), Positives = 160/321 (49%), Gaps = 32/321 (9%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E +L HW+P EVP+ DD+ W L + E+ ++ + FF S+ Sbjct: 32 PFRYPWAYEAWLVQQQVHWLPEEVPLADDVKDWH--RNLNEVEQHLVTQIFRFFTQSDVE 89 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V NN + Y + P ++ AF E +H + +++ ++G+ E E F Y+E Sbjct: 90 V-NNCYMKHYSRVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVEYSAFLKYKE 147 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + Y + S D+ +E + L F EG+ + FA +L+ Sbjct: 148 MKD-------KYDYMHSFSV--------DSKREIAKTLAAFGAFTEGLQLFASFAILLNF 192 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML-----H 266 R K+ G+ + + +RDE+LH I + + EN +WT++ +Q+ R + H Sbjct: 193 PRFGKLKGMGQIVSWSVRDETLHCLSIIKLFHVFIDENREIWTEDLRQEIRQICATIVEH 252 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 E +++A+ ++ GL+A + Y+++IA+RR Q+GLEPLF NP PW+ ++ Sbjct: 253 EDAFIDLAFELGSVE----GLDAAQVKSYIRYIADRRLIQLGLEPLFHVERNPLPWIDDM 308 Query: 327 IDLKKEKNFFETRVTEYQQGA 347 ++ + NFFE R TEY + + Sbjct: 309 LNAVEHANFFENRATEYSRAS 329 >gi|49899161|gb|AAH75746.1| Ribonucleotide reductase M2 polypeptide [Danio rerio] Length = 386 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 98/338 (28%), Positives = 163/338 (48%), Gaps = 28/338 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 Q+ K+ V+++ +L + P++Y W+ Y A + W EV + DL W S Sbjct: 56 QSKAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDS 115 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D+ER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 116 ---LKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEM 172 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D E LFN +P + KA+WAL + G K+A Sbjct: 173 YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNW----------IGDKNAR---YG 219 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 220 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 275 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 HL +K ++ + ++ A +E + + +P +G+N +QY++F+A+R ++ Sbjct: 276 ---HLISKPSEETVKKIIMNAVEIEQEFLTDALPVKLIGMNCDLMKQYIEFVADRLLLEL 332 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 G + +++ ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 333 GFDKVYR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 368 >gi|6525234|gb|AAF15363.1|AF205376_1 ribonucleotide reductase R2 subunit [Plasmodium falciparum] Length = 320 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 92/329 (27%), Positives = 160/329 (48%), Gaps = 29/329 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +R+LN SD L P+ Y W+ Y A + W E+ + DL K L ++E+ Sbjct: 2 RRILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL---KDFEKLNENEKHF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + D Sbjct: 59 IKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118 Query: 142 EGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E N++ +P++ KA WA ++ +S + V EG Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWINDTNS--------------FAERIVANACVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + F F I + NK+ G+ + I RDE LH +F + + + + P + Sbjct: 165 ILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLP-------E 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 Q + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G +F +++N Sbjct: 218 QMVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HSKN 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 PF WM ++I L+ + NFFE RV +YQ+ Sbjct: 277 PFNWM-DLISLQGKTNFFEKRVADYQKSG 304 >gi|67459102|ref|YP_246726.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia felis URRWXCal2] gi|67004635|gb|AAY61561.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia felis URRWXCal2] Length = 327 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 91/319 (28%), Positives = 159/319 (49%), Gaps = 28/319 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK L E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLAPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y + P ++ AF E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ Q+ D ++ L VF EG+ + FA +L+ R Sbjct: 127 EMKDKYDYMQQFGV------------DTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EA 268 NKM G+ + + +RDE+LH N I + ENP +WT+ +++ T++H E Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +E+A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ Sbjct: 235 AFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLN 290 Query: 329 LKKEKNFFETRVTEYQQGA 347 + NFFE R TEY + A Sbjct: 291 GVEHTNFFENRATEYSKAA 309 >gi|255530602|ref|YP_003090974.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM 2366] gi|255343586|gb|ACU02912.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM 2366] Length = 324 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 97/333 (29%), Positives = 156/333 (46%), Gaps = 30/333 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L D LLP+KY WE Y + + W E+ + DD W + L D ER Sbjct: 3 EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FF++S+ +V N+ + + PE R + Q E +HS T+ +I + Sbjct: 60 HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D E LF+ VP + KA WAL++ S F + L F V Sbjct: 120 KDPDEKDRLFHAIETVPCVKKKAEWALRWIDNGS--------------FAERLVAFAAV- 164 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++F F I L + M G+ + I RDE H F + +K K Sbjct: 165 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGSHCEFACLLYGMLK-------NKL 217 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q++ ++ +A +E + + +P +G+NA QY++F+A+R ++G ++ T Sbjct: 218 SQEQVHGIIRDAVEIEKEFVTDALPVALIGMNAKLMSQYIEFVADRWLQELGYSKIYNAT 277 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E+I L+ + NFFE RV +YQ+ L Sbjct: 278 -NPFDFM-EMISLQGKTNFFEKRVGDYQKSGVL 308 >gi|156839886|ref|XP_001643629.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM 70294] gi|156114248|gb|EDO15771.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM 70294] Length = 394 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 102/344 (29%), Positives = 158/344 (45%), Gaps = 35/344 (10%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L ++ E +N D R++ + P++Y +E Y A + W E+ + DL+ Sbjct: 62 LKEMEKNEPLLNEDKNRLI--------MHPIRYPDIYEAYKKAEASFWTAEEIDLSKDLS 113 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W K L +ER I R L FFA+S+ +V N+ + PE R + Q E + Sbjct: 114 DWNDK--LNSNERFFISRVLAFFAASDGIVNENLTENFSVEVKVPEARCFYGFQIMIENI 171 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS T+ +I + D E LFN +P I KA WAL++ D+ Sbjct: 172 HSETYSLLIDTYIKDPKESDFLFNAIDYIPQIKEKAEWALRWINN-------------DE 218 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + V + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 219 ALFGERLVAFASIEGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFASLLFS 278 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 HL K ++ EA +E Y + +P +G+NA QY++F+A+R Sbjct: 279 -------HLDNKPDPAIVEKIVTEAVEIEKRYFIDALPVALLGMNAKLMNQYVEFVADRL 331 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 G E +K ENPF +M E I L + NFFE RV++YQ+ + Sbjct: 332 LVSFGNEKYYK-VENPFDFM-ENISLAGKTNFFEKRVSDYQKAS 373 >gi|303258316|ref|ZP_07344319.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales bacterium 1_1_47] gi|302858762|gb|EFL81850.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales bacterium 1_1_47] Length = 328 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 92/322 (28%), Positives = 152/322 (47%), Gaps = 25/322 (7%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N P Y WA++ ++++ HW+ TEVPM +D+ WK N LTD ER + + FF Sbjct: 11 NYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWK--NVLTDGERDFLTKVFRFFTQ 68 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 + V++ V PE R L A EAVH + ++I ++G+ E +Y E Sbjct: 69 GDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPE----TVYNE 124 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ-DLFVFYVVFEGMWFYTGFAQILS 210 LQY F G + QE + + F EGM ++ F +L+ Sbjct: 125 F----------LQYEAMAEKHDFFHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLLN 174 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK-----SRTML 265 R M G+ + + + DE+LH I + + IENP LWT +++ + + Sbjct: 175 FTRNGTMKGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMIE 234 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 E +++A+ M K L+ + Y+++I +RR +G++ +FK NP PW+ Sbjct: 235 LEDAFIDLAFGVNDMSKQ--NLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDS 292 Query: 326 VIDLKKEKNFFETRVTEYQQGA 347 ++ + NFFE RV +Y +GA Sbjct: 293 MLGV-THTNFFENRVVDYAKGA 313 >gi|224055741|ref|XP_002298630.1| predicted protein [Populus trichocarpa] gi|222845888|gb|EEE83435.1| predicted protein [Populus trichocarpa] Length = 329 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 94/332 (28%), Positives = 158/332 (47%), Gaps = 29/332 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + ++ +L D + P++Y WE Y A + W EV + D+ W++ LT DE Sbjct: 4 IPEEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDVGHWEN---LTPDE 60 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + I L FFA+S+ +V NI + + E R + Q E +HS + ++ + Sbjct: 61 KHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY 120 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D E LF+ VP + KA WAL++ D + F + L F V Sbjct: 121 IKDSTEKNRLFHAIETVPCVAKKAEWALRWI-------------DGGESFAERLIAFACV 167 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F F I L + M G+ + I RDE LH +F + + ++ K Sbjct: 168 -EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------KK 219 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +++ + ++ EA +E + +++P VG+N QY++F+A+R +G ++ Sbjct: 220 LSEERVKGIVKEAVDIEREFVVDSLPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNV 279 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 NPF WM E+I L+ + NFFE RV EYQ+ + Sbjct: 280 A-NPFDWM-ELISLQGKTNFFEKRVGEYQKAS 309 >gi|157825769|ref|YP_001493489.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari str. Hartford] gi|157799727|gb|ABV74981.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari str. Hartford] Length = 327 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 91/319 (28%), Positives = 159/319 (49%), Gaps = 28/319 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+ + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYTAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y + P ++ AF E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKP-TEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ Q+ D ++ L VF EG+ + FA +L+ R Sbjct: 127 EMKDKYDYIQQFGV------------DTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EA 268 NKM G+ + + +RDE+LH N I + ENP +WT+ +++ T++H E Sbjct: 175 FNKMKGMGQIISWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +E+A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ Sbjct: 235 AFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLN 290 Query: 329 LKKEKNFFETRVTEYQQGA 347 + NFFE R TEY + A Sbjct: 291 GVEHTNFFENRATEYSKAA 309 >gi|332876813|ref|ZP_08444570.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685239|gb|EGJ58079.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 324 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 99/326 (30%), Positives = 160/326 (49%), Gaps = 30/326 (9%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+++ W+ Y +A + W EV + DL W++K L D+ER I Sbjct: 6 LLQDNKDRFVIFPIQHNDIWQFYKNAEASFWTAEEVDLSPDLHDWQNK--LNDNERFFIS 63 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+ + + + PE R + Q E +HS + +I + D Sbjct: 64 RVLAFFAASDGIVNENLAINFLQEVQYPEARCFYGFQIMIENIHSEMYSLLIDTYVKDPA 123 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E L +P +T KA WAL++ T G+ F + L F V EG++ Sbjct: 124 EKDYLLRAIETIPCVTKKAKWALRWI--------TKGS------FAERLIAFAAV-EGIF 168 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV-INQIKIENPHLWTKEFQQ 259 F F I L + M G+ + I RDE LH +F + +N HL K ++ Sbjct: 169 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYVN-------HLQNKLSEE 221 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319 R ++ +A +E + + +P +G+NA QY++F+A+R +G ++ T NP Sbjct: 222 TIREIIVDAVAIEKEFVTDALPVKLIGMNAELMCQYIEFVADRLLVALGCNKVWNAT-NP 280 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQ 345 F +M E+I L+ + NFFE RV EYQ+ Sbjct: 281 FDFM-ELISLQGKTNFFERRVGEYQK 305 >gi|302665732|ref|XP_003024474.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517] gi|291188529|gb|EFE43863.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517] Length = 529 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 149/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ W N L DDER I L FFA+S+ Sbjct: 210 LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 267 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + ++ + LF Sbjct: 268 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 327 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D D F Q L F V EG++F FA I Sbjct: 328 TIPCIRKKADWAIRWIQ------------DKDSTFAQRLVAFAAV-EGIFFSGSFASIFW 374 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ EA Sbjct: 375 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNYRPDPSAVEAIITEAVT 427 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G + + T NPF +M I L Sbjct: 428 IEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKFYNTT-NPFDFMDN-ISLA 485 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 486 GKTNFFEKRVGDYQKAG 502 >gi|168049349|ref|XP_001777126.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671569|gb|EDQ58119.1| predicted protein [Physcomitrella patens subsp. patens] Length = 325 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 94/317 (29%), Positives = 149/317 (47%), Gaps = 29/317 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY WE Y A + W EV + DL W++ LTD+ER I L FFA+S+ Sbjct: 16 MFPIKYPQVWEMYKKAEASFWTAEEVDLSADLKHWEA---LTDNERHFISHVLAFFAASD 72 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + + PE R + Q E +HS + ++ + D+ E LFN Sbjct: 73 GIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYIKDQSEKHRLFNAIE 132 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P +T KA WAL++ D+ F + + F V EG++F F I Sbjct: 133 TIPCVTRKAEWALKWI-------------DSSGSFAERILAFACV-EGIFFSGSFCSIFW 178 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + K + + ++ EA Sbjct: 179 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLN-------NKLSEDRVHEIVCEAVD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E + VG+N +Y+ F+A+R +G + NPF WM E+I L+ Sbjct: 232 IEREFVCEALSCDLVGMNKIMMSEYIDFVADRLLVSLGYNKRYN-ARNPFDWM-ELISLQ 289 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ + Sbjct: 290 GKTNFFEKRVGEYQKAS 306 >gi|254517517|ref|ZP_05129573.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp. 7_2_43FAA] gi|226911266|gb|EEH96467.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp. 7_2_43FAA] Length = 344 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 94/334 (28%), Positives = 170/334 (50%), Gaps = 19/334 (5%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KRM+N + ++N +KY W + Y A NN W+P E+ + DL K N LT+DER Sbjct: 20 KRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLAQDL---KDYNKLTNDERT 76 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +S+ N+ I +++ E L QAF+EAVHS ++ Y++ ++ Sbjct: 77 AYDKILSFLIFLDSIQTANLS-NINNYITASEVNLCLTIQAFQEAVHSQSYSYMLDTICS 135 Query: 141 DE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 E E+ +++ + + + + Y L +P+ QE L + + E Sbjct: 136 PEKRNEILYQWKDDKILLERNKFIGELYNNFLEAPT---------QENLIKTIMANYILE 186 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++FY+GF +L R KM G A++ +YI RDE+ HL +++ ++++E P ++T E Sbjct: 187 GIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNILKELQLEQPEIFTDEV 246 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316 + + + M+ A EI++ + + G+N Y++++ N R IGL+ +++ + Sbjct: 247 KNQLKEMMKTAVEHEISWGNYVIGDNIQGINKNLINDYIKYLGNLRMKAIGLDAIYEGHD 306 Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 NP W+ + D K +FFE + T Y + L Sbjct: 307 NNPAAWVDILSDANSVKTDFFEAKSTAYAKAGAL 340 >gi|126662515|ref|ZP_01733514.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria bacterium BAL38] gi|126625894|gb|EAZ96583.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria bacterium BAL38] Length = 325 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 97/334 (29%), Positives = 163/334 (48%), Gaps = 32/334 (9%) Query: 24 MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D + P+K+ W W K AC W E+ + DL W +K L DDE+ Sbjct: 7 ILQENKDRFVIFPIKHQDIWEWYKKQEACI--WTAEEIDLHTDLNDWNNK--LNDDEKYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + PE + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYPEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E LF+ P+I KA WAL++ ++ S F + L F V EG Sbjct: 123 EVEKNKLFHAIETFPAIKEKAQWALKWIESDS--------------FAERLIAFAAV-EG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + + H+ K + Sbjct: 168 IFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGMHCDFA------VHLHSHHIVNKVPK 221 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ ++ +A +E + E++P +G+NA QY++F+ +R ++G + ++ + N Sbjct: 222 ERITEIIVDALNIERQFITESLPVSLIGMNATLMTQYLEFVTDRLLVELGCDRVYN-SSN 280 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PF +M ++I L+ + NFFE RV EYQ+ + D Sbjct: 281 PFDFM-DMISLQGKTNFFEKRVAEYQKAGVMNSD 313 >gi|330998673|ref|ZP_08322403.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella excrementihominis YIT 11859] gi|329576534|gb|EGG58042.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella excrementihominis YIT 11859] Length = 327 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 92/322 (28%), Positives = 152/322 (47%), Gaps = 25/322 (7%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N P Y WA++ ++++ HW+ TEVPM +D+ WK N LTD ER + + FF Sbjct: 10 NYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWK--NVLTDGERDFLTKVFRFFTQ 67 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 + V++ V PE R L A EAVH + ++I ++G+ E +Y E Sbjct: 68 GDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPE----TVYNE 123 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ-DLFVFYVVFEGMWFYTGFAQILS 210 LQY F G + QE + + F EGM ++ F +L+ Sbjct: 124 F----------LQYEAMAEKHDFFHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLLN 173 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK-----SRTML 265 R M G+ + + + DE+LH I + + IENP LWT +++ + + Sbjct: 174 FTRNGTMKGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMIE 233 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 E +++A+ M K L+ + Y+++I +RR +G++ +FK NP PW+ Sbjct: 234 LEDAFIDLAFGVNDMSKQ--NLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDS 291 Query: 326 VIDLKKEKNFFETRVTEYQQGA 347 ++ + NFFE RV +Y +GA Sbjct: 292 MLGV-THTNFFENRVVDYAKGA 312 >gi|302497417|ref|XP_003010709.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371] gi|291174252|gb|EFE30069.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371] Length = 408 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 149/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ W N L DDER I L FFA+S+ Sbjct: 89 LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERYFISHVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + ++ + LF Sbjct: 147 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 206 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D D F Q L F V EG++F FA I Sbjct: 207 TIPCIRKKADWAIRWIQ------------DKDSTFAQRLVAFAAV-EGIFFSGSFASIFW 253 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ EA Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNYRPDPSAVEAIITEAVT 306 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G + + T NPF +M I L Sbjct: 307 IEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKFYNTT-NPFDFMDN-ISLA 364 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 365 GKTNFFEKRVGDYQKAG 381 >gi|124808087|ref|XP_001348226.1| ribonucleotide reductase small subunit [Plasmodium falciparum 3D7] gi|23497116|gb|AAN36665.1|AE014816_50 ribonucleotide reductase small subunit [Plasmodium falciparum 3D7] Length = 349 Score = 142 bits (359), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 96/344 (27%), Positives = 167/344 (48%), Gaps = 33/344 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 S +Q G K +N +++LN SD L P+ Y W+ Y A + W E+ + DL Sbjct: 20 FSDLQKG-KEIN---EKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL- 74 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 K L ++E+ IK L FFA+S+ +V N+ R + E +++ Q E + Sbjct: 75 --KDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENI 132 Query: 127 HSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS T+ +I + DE E N++ +P++ KA WA ++ +S Sbjct: 133 HSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWINDTNS------------ 180 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + V EG+ F F I + NK+ G+ + I RDE LH +F + + Sbjct: 181 --FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYS 238 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 + + P +Q + ++ EA +E ++ E++P +G+N+ QY++F+A+R Sbjct: 239 LLDNKLP-------EQMVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRL 291 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +G +F +++NPF WM ++I L+ + NFFE RV +YQ+ Sbjct: 292 LECLGCSKIF-HSKNPFNWM-DLISLQGKTNFFEKRVADYQKSG 333 >gi|51891459|ref|YP_074150.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium thermophilum IAM 14863] gi|51855148|dbj|BAD39306.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium thermophilum IAM 14863] Length = 346 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 94/327 (28%), Positives = 164/327 (50%), Gaps = 15/327 (4%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ +L +KY WA + N W+P EVP+ DD K LT DE+ R L F Sbjct: 30 TNIMELTNVKYEWAQKLSDIMLRNFWIPEEVPLLDDA---KQYLELTADEQWAYDRMLSF 86 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146 +S++ ++ I +++ PE L F EA+HS ++ Y++ S+ E ++ Sbjct: 87 VIFMDSILTVSMPNLI-NYVTAPEINMCLSIHNFHEALHSKSYGYVLESVVPAERRQYIY 145 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 +++RE + + + Q + D+ F++ YV+ EG++FY+GFA Sbjct: 146 DLWREDRQLLERNRYIANTFQLFAD-------NPTDEHFVRACMAQYVL-EGIYFYSGFA 197 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 +L R KM G A + Q+I RDE H+ +++N ++ E P L+T + R M+ Sbjct: 198 FFYALARMGKMKGTATEIQFINRDEITHVAVFQNILNGLRQERPQLFTPQLDADLRAMIR 257 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 +A E+A+A + GL+ + Y++ +A++R +G EPL+ NP W+ Sbjct: 258 QAAEHEMAWAAYCVGNRIQGLSGEVLQGYVKHLADQRARALGFEPLYGNHPNPIKWVESF 317 Query: 327 IDLKKEK-NFFETRVTEYQQGAELKWD 352 +L + K +FFETRVT Y + + D Sbjct: 318 SNLNQTKADFFETRVTNYAKSTNIDLD 344 >gi|75224904|sp|Q6Y657|RIR2B_ARATH RecName: Full=Putative ribonucleoside-diphosphate reductase small chain B; AltName: Full=Ribonucleoside-diphosphate reductase R2B subunit; AltName: Full=Ribonucleotide reductase small subunit B gi|37729626|gb|AAO62422.1| ribonucleotide reductase small subunit [Arabidopsis thaliana] Length = 333 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 94/327 (28%), Positives = 155/327 (47%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P++Y WE Y A + W EV + D W+ N LT+DER IK Sbjct: 9 ILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTNDERHFIK 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E R + Q E +HS + ++ + D Sbjct: 67 HVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIKDNK 126 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF +P +T KA WA+++ + Q F + + F V EG++ Sbjct: 127 ERDHLFRAIETIPCVTKKAEWAMKWI-------------NGSQSFAERIVAFACV-EGIF 172 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ TK + + Sbjct: 173 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLR-------TKLDEDR 225 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + ++ +A +E + + +P VG+N QY++F+A+R +G ++ + NPF Sbjct: 226 LKAIVCDAVEIEREFVCDALPCALVGMNRELMSQYIEFVADRLLAALGCAKVYGVS-NPF 284 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV EYQ+ + Sbjct: 285 DWM-ELISLQGKTNFFEKRVGEYQKAS 310 >gi|2500209|sp|Q60561|RIR2_MESAU RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|49650|emb|CAA48232.1| ribonucleotide reductase [Mesocricetus auratus] Length = 386 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L D Sbjct: 67 SVEDEPLLRENPRRFVVFPIEYHDIWKMYKKAEASFWTAEEVDLSKDIQHWEA---LKPD 123 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 124 ERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDT 183 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + V + Sbjct: 184 YIKDSKEREYLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 230 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 231 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 283 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R ++G +FK Sbjct: 284 KPSEQRVQEIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFK 343 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 344 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 372 >gi|1710401|sp|P49730|RIR2_TOBAC RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|1044912|emb|CAA63194.1| ribonucleotide reductase R2 [Nicotiana tabacum] Length = 329 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 93/332 (28%), Positives = 159/332 (47%), Gaps = 29/332 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + ++ +L + D + P++Y WE Y A + W EV + D W++ LT E Sbjct: 4 IPEEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWET---LTPGE 60 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+ + + E R + Q E +HS + ++ S Sbjct: 61 RHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESY 120 Query: 139 GLDEGELFNMYREV---PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D E ++R V P + KA WAL++ D + F + L F V Sbjct: 121 IKDSDEKSRLFRAVETNPCVEKKAKWALRWI-------------DGSETFAERLVAFACV 167 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F F I L + M G+ + I RDE LH +F + + ++ TK Sbjct: 168 -EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------TK 219 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +++ + ++ +A +E + + +P VG+N +Y++F+A+R +G + L+ Sbjct: 220 LTEERVKGIVADAVEIEREFVCDALPCALVGMNGDLMSKYIEFVADRLLDALGYDKLYN- 278 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +NPF WM E+I L+ + NFFE RV EYQ+ + Sbjct: 279 AQNPFDWM-ELISLQGKTNFFEKRVGEYQKAS 309 >gi|319953269|ref|YP_004164536.1| ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM 14237] gi|319421929|gb|ADV49038.1| Ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM 14237] Length = 326 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 97/334 (29%), Positives = 163/334 (48%), Gaps = 32/334 (9%) Query: 24 MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D + P+++ W W K AC W E+ + +D W +K L DDER Sbjct: 7 ILQENKDRFVIFPIQHNDLWEWYKKQEAC--IWTAEEIDLSEDANDWNNK--LNDDERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E LF P+I KA+WAL++ + SPSF + L F V EG Sbjct: 123 EKEKTVLFQAIENFPAIKKKADWALKW---IDSPSFA-----------ERLIAFAAV-EG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + N H+ + + Sbjct: 168 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFA------VHLHNKHIINQVPK 221 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ +L +A +E + E++P +G+N+ QY++F+ +R ++ + ++ T N Sbjct: 222 ERITEILVDALNIEREFITESLPASLIGMNSKLMTQYLEFVTDRLLVELECDKVYNST-N 280 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PF +M ++I ++ + NFFE RV+EYQ+ L D Sbjct: 281 PFDFM-DMIGMEGKTNFFEKRVSEYQKAGVLNSD 313 >gi|148380773|ref|YP_001255314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. ATCC 3502] gi|153932443|ref|YP_001385057.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. ATCC 19397] gi|153934989|ref|YP_001388527.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. Hall] gi|148290257|emb|CAL84376.1| ribonucleoside-diphosphate reductase beta chain [Clostridium botulinum A str. ATCC 3502] gi|152928487|gb|ABS33987.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. ATCC 19397] gi|152930903|gb|ABS36402.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. Hall] Length = 342 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 90/321 (28%), Positives = 166/321 (51%), Gaps = 18/321 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDEH 147 Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + + + A Y + P FL+ + Y++ EG++FY+GF+ +L R Sbjct: 148 LLERNKFIAGIYEKFNKEPEI--------HNFLRAIMANYIL-EGIYFYSGFSFFYTLAR 198 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM + ++YI RDE HL ++I ++K EN H++T+E +++ R M+ EI Sbjct: 199 QGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENLHIFTEELEEEFRQMMRMGVEHEI 258 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332 + +GLN E+Y+++++N R IGL+PL+ + ++P W+ L Sbjct: 259 QWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYPEINKHPMEWIDSFSKLNST 318 Query: 333 K-NFFETRVTEYQQGAELKWD 352 K +FFE +VT Y + A +D Sbjct: 319 KTDFFEAKVTNYTKAAAFDFD 339 >gi|170761039|ref|YP_001788131.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A3 str. Loch Maree] gi|169408028|gb|ACA56439.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A3 str. Loch Maree] Length = 342 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 90/321 (28%), Positives = 166/321 (51%), Gaps = 18/321 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDEH 147 Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + + + A Y + P FL+ + Y++ EG++FY+GF+ +L R Sbjct: 148 LLERNKFIAGIYEKFNKEPEI--------HNFLRAIMANYIL-EGIYFYSGFSFFYTLAR 198 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM + ++YI RDE HL ++I ++K EN H++T+E +++ R M+ EI Sbjct: 199 QGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEEFRQMMRMGVEHEI 258 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332 + +GLN E+Y+++++N R IGL+PL+ + ++P W+ L Sbjct: 259 QWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYPEINKHPMEWIDGFSKLNST 318 Query: 333 K-NFFETRVTEYQQGAELKWD 352 K +FFE +VT Y + A +D Sbjct: 319 KTDFFEAKVTNYTKAAAFDFD 339 >gi|168184457|ref|ZP_02619121.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum Bf] gi|237796249|ref|YP_002863801.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium botulinum Ba4 str. 657] gi|182672468|gb|EDT84429.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum Bf] gi|229263158|gb|ACQ54191.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum Ba4 str. 657] Length = 342 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 90/321 (28%), Positives = 166/321 (51%), Gaps = 18/321 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDEH 147 Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + + + A Y + P FL+ + Y++ EG++FY+GF+ +L R Sbjct: 148 LLERNKFIAGIYEKFNKEPEI--------HNFLRVIMANYIL-EGIYFYSGFSFFYTLAR 198 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM + ++YI RDE HL ++I ++K EN H++T+E +++ R M+ EI Sbjct: 199 QGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEEFRQMMRIGVEHEI 258 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332 + +GLN E+Y+++++N R IGL+PL+ + ++P W+ L Sbjct: 259 QWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYLEINKHPMEWIDSFSKLNST 318 Query: 333 K-NFFETRVTEYQQGAELKWD 352 K +FFE +VT Y + A +D Sbjct: 319 KTDFFEAKVTNYTKAAAFDFD 339 >gi|67515571|ref|XP_657671.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4] gi|40746089|gb|EAA65245.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4] gi|259489743|tpe|CBF90266.1| TPA: Ribonucleotide reductase [Source:UniProtKB/TrEMBL;Acc:Q9HEW8] [Aspergillus nidulans FGSC A4] Length = 406 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 153/317 (48%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L +DER I R L FFA+S+ Sbjct: 86 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNEDERYFISRVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +H+ T+ +I + + + LF+ Sbjct: 144 GIVNENLLERFSGEVQIPEARCFYGFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAID 203 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D + F Q L F V EG++F FA I Sbjct: 204 TIPCIRKKADWAIKWIQ------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFW 250 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ ++ EA Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNWRPSKKVVEDIIVEAVA 303 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G + F T NPF +M E I L Sbjct: 304 IEKEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKYFNAT-NPFDFM-ESISLA 361 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 362 GKTNFFEKRVGDYQKAG 378 >gi|18859327|ref|NP_571525.1| ribonucleoside-diphosphate reductase subunit M2 [Danio rerio] gi|292624782|ref|XP_002665783.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Danio rerio] gi|3914657|sp|P79733|RIR2_DANRE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase protein R2 class I; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|1695831|gb|AAB37103.1| ribonucleotide reductase protein R2 class I [Danio rerio] gi|27881838|gb|AAH44355.1| Ribonucleotide reductase M2 polypeptide [Danio rerio] gi|56207929|emb|CAI21240.1| ribonucleotide reductase M2 polypeptide [Danio rerio] gi|182889152|gb|AAI64707.1| Rrm2 protein [Danio rerio] Length = 386 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 98/338 (28%), Positives = 162/338 (47%), Gaps = 28/338 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 Q+ K+ V+++ +L + P++Y W+ Y A + W EV + DL W S Sbjct: 56 QSKAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDS 115 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D+ER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 116 ---LKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEM 172 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D E LFN +P + KA+WAL + G K+A Sbjct: 173 YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNW----------IGDKNAR---YG 219 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 220 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 275 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 HL K ++ + ++ A +E + + +P +G+N +QY++F+A+R ++ Sbjct: 276 ---HLINKPSEETVKKIIMNAVEIEQEFLTDALPVKLIGMNCDLMKQYIEFVADRLLLEL 332 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 G + +++ ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 333 GFDKVYR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 368 >gi|282849773|ref|ZP_06259157.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella parvula ATCC 17745] gi|282580710|gb|EFB86109.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella parvula ATCC 17745] Length = 342 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 89/320 (27%), Positives = 160/320 (50%), Gaps = 16/320 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ + ++++ +R + Sbjct: 89 SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDEWRTDKT 147 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + + Q S D + L + + EG++FY+GF+ +L R Sbjct: 148 LLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIYFYSGFSFFYTLARQ 199 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM + ++YI RDE HL ++I +++ E P L+T E + K M+ + EIA Sbjct: 200 GKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAKITDMIRQGAENEIA 259 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333 + +GLN E+Y++++AN R IGL L+ + ENP W+ +L K Sbjct: 260 WGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKENPMEWIESFSNLNSTK 319 Query: 334 -NFFETRVTEYQQGAELKWD 352 +FFE +VT Y + A +D Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339 >gi|330921941|ref|XP_003299625.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1] gi|311326599|gb|EFQ92269.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1] Length = 410 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 150/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W + L DDER I L FFA+S+ Sbjct: 84 LFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNKR--LNDDERFFISHVLAFFAASD 141 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E VHS T+ +I + + + LFN Sbjct: 142 GIVNENLVERFSSEVQIPEARCFYGFQIMMENVHSETYSLLIDTYISEPRQRKYLFNAID 201 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WAL++ D + F L F V EG++F FA I Sbjct: 202 NIPCIRKKADWALRWIS------------DKNSTFANRLVAFAAV-EGIFFSGSFASIFW 248 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE +H +F + + + + ++ R ++ EA Sbjct: 249 LKKRGLMPGLTFSNELISRDEGMHTDFACLLFSLLN-------NRPSKESVRAIITEAVE 301 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G ++ T NPF +M E I L Sbjct: 302 IEQEFLSDALPCALLGMNATLMCQYIEFVADRLLLALGNTKVYNAT-NPFDFM-ENISLA 359 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 360 GKTNFFEKRVGDYQKAG 376 >gi|222475064|ref|YP_002563479.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma marginale str. Florida] gi|222419200|gb|ACM49223.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma marginale str. Florida] Length = 343 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 92/321 (28%), Positives = 161/321 (50%), Gaps = 18/321 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L++ E+ ++ + FF ++ + Sbjct: 31 PFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFTQAD-I 87 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y ++ P ++ AF E VH + Y++ ++G+ E E + + + Sbjct: 88 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFLKFE 145 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ ++ ++ K + + L VF EG+ + FA +L+ R Sbjct: 146 VMKKKYDYMQRFEES---------RKGDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 196 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + + RDE+LH I + N EN +W + +++ LE Sbjct: 197 FGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDENLREELYGACRVIVSLED 256 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + G V GL+A ++Y+++IANRR Q+ LEP++ NP PW+ E+++ + Sbjct: 257 EFIDLAFALGDVEGLSAAEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNGVEH 316 Query: 333 KNFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY + A E WD Sbjct: 317 TNFFENRVTEYSRAATEGTWD 337 >gi|11878241|gb|AAG40862.1| ribonucleotide reductase [Emericella nidulans] Length = 406 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 153/317 (48%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L +DER I R L FFA+S+ Sbjct: 86 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNEDERYFISRVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +H+ T+ +I + + + LF+ Sbjct: 144 GIVNENLLERFSGEVQIPEARCFYGFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAID 203 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D + F Q L F V EG++F FA I Sbjct: 204 TIPCIRKKADWAIKWIQ------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFW 250 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ ++ EA Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNWRPSKKVVEDIIVEAVA 303 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G + F T NPF +M E I L Sbjct: 304 IEKEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKEYFNAT-NPFDFM-ESISLA 361 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 362 GKTNFFEKRVGDYQKAG 378 >gi|313768358|ref|YP_004062038.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1] gi|312599054|gb|ADQ91078.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1] Length = 388 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 97/326 (29%), Positives = 158/326 (48%), Gaps = 33/326 (10%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PLKY WE Y A ++W EV + D+ WK+ L D+E+ IK L FFA S+ Sbjct: 86 VFPLKYPELWELYKKAQMSNWTAEEVDLSKDMDDWKT---LNDNEQKFIKYILAFFAGSD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V NI + E R + Q+ E VH T+ +I G ++ +LF + Sbjct: 143 GIVFENINNNFADEVQISEARSFYAYQSHNEMVHGETYSKLIDKYIKDGAEKKQLFEAIQ 202 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP I KANWAL++ D + F + LF F V EG++F F I Sbjct: 203 TVPCIERKANWALKWF-------------DKSRPFAERLFAFACV-EGIFFSGSFCAIFW 248 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH F +++ ++ K + +++ EA Sbjct: 249 LKKRGLMPGLCFSNELISRDEGLHQEFAVELFKLLR-------NKPSTETIHSIVKEAVE 301 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ +Y++++++R Q+G P++ ++NPF +M E I L Sbjct: 302 IEKNFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQVGQPPIWN-SKNPFDFM-ENISLD 359 Query: 331 KEKNFFETRVTEY----QQGAELKWD 352 + NFFE RV +Y AE+ +D Sbjct: 360 GKTNFFEKRVGDYGKLDDDSAEIGFD 385 >gi|148234092|ref|NP_001079369.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus laevis] gi|27371032|gb|AAH41209.1| MGC52676 protein [Xenopus laevis] Length = 386 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 98/341 (28%), Positives = 161/341 (47%), Gaps = 28/341 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 +P K ++D+ +L + P++Y W+ Y A + W EV + DL Sbjct: 53 TPKSKAPKNPRLEDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQH 112 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +E+ I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 113 WES---LKKEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D E LFN +P + KA+WAL + G K A Sbjct: 170 SEMYSLLIDTYVKDPKEREYLFNAIETLPCVKKKADWALHWI----------GDKQAT-- 217 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 218 -FGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 275 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL K +++ ++ +A +E + E +P +G+N +QY++F+A+R Sbjct: 276 ------HLIRKPSEERVVELITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLL 329 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ++G + +FK T NPF +M E I L+ + NFFE +V EYQ+ Sbjct: 330 LELGFKKVFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQK 368 >gi|316971821|gb|EFV55552.1| ribonucleotide reductase R2 subunit [Trichinella spiralis] Length = 366 Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 100/343 (29%), Positives = 163/343 (47%), Gaps = 28/343 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 +P++ ++ ++ +L + LLPL+Y W Y A + W EV ++ D Sbjct: 33 TPMEQDAAAIDNCEEPLLRSNPKRFVLLPLEYPDIWAMYKKAEASFWTVEEVDLRKDAND 92 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W L DE+ I L FFA+S+ +V N+V + + E R + Q E VH Sbjct: 93 WAK---LNKDEKHFISHVLAFFAASDGIVFENLVERFSQEIQVTEARFFYGFQIAIENVH 149 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D E LFN +P + KA+WAL++ SP Sbjct: 150 SEMYSLLIDTYIRDPVERDFLFNAIETIPCVKKKADWALRWIGDRQSP------------ 197 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F + L F V EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 198 FCERLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS- 255 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL K + + R ++ EA +E + + +P +G+N QY++++A+R Sbjct: 256 ------HLKKKPTEDRVRQIITEAVSIEQEFLTDALPVRLIGMNCVLMSQYIEYVADRLL 309 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++G ++ +ENPF +M E+I L+ + NFFE RV EYQ+ Sbjct: 310 VELGCSKVYN-SENPFDFM-EMISLEGKTNFFEKRVGEYQKAG 350 >gi|145580571|pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase Subunit R2 Length = 332 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 9 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 65 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 66 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 125 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + V + Sbjct: 126 YIKDPKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 172 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 173 AVEGIFFSGSFASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 225 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+ Sbjct: 226 KPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 285 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 286 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 314 >gi|56416698|ref|YP_153772.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. St. Maries] gi|254994906|ref|ZP_05277096.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. Mississippi] gi|255003042|ref|ZP_05278006.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. Puerto Rico] gi|255004164|ref|ZP_05278965.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. Virginia] gi|56387930|gb|AAV86517.1| ribonuceoside-diphosphate reductase beta chain [Anaplasma marginale str. St. Maries] Length = 324 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 92/321 (28%), Positives = 161/321 (50%), Gaps = 18/321 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L++ E+ ++ + FF ++ + Sbjct: 12 PFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y ++ P ++ AF E VH + Y++ ++G+ E E + + + Sbjct: 69 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFLKFE 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ ++ ++ K + + L VF EG+ + FA +L+ R Sbjct: 127 VMKKKYDYMQRFEES---------RKGDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + + RDE+LH I + N EN +W + +++ LE Sbjct: 178 FGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDENLREELYGACRVIVSLED 237 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + G V GL+A ++Y+++IANRR Q+ LEP++ NP PW+ E+++ + Sbjct: 238 EFIDLAFALGDVEGLSAAEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNGVEH 297 Query: 333 KNFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY + A E WD Sbjct: 298 TNFFENRVTEYSRAATEGTWD 318 >gi|1710398|sp|P50650|RIR2_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|555613|gb|AAA50170.1| ribonucleotide reductase small subunit [Plasmodium falciparum] Length = 349 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 96/344 (27%), Positives = 167/344 (48%), Gaps = 33/344 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 S +Q G K +N +++LN SD L P+ Y W+ Y A + W E+ + DL Sbjct: 20 FSDLQKG-KEIN---EKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL- 74 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 K L ++E+ IK L FFA+S+ +V N+ R + E +++ Q E + Sbjct: 75 --KDFEKLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENI 132 Query: 127 HSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS T+ +I + DE E N++ +P++ KA WA ++ +S Sbjct: 133 HSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWINDTNS------------ 180 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + V EG+ F F I + NK+ G+ + I RDE LH +F + + Sbjct: 181 --FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYS 238 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 + + P +Q + ++ EA +E ++ E++P +G+N+ QY++F+A+R Sbjct: 239 LLDNKLP-------EQIIQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRL 291 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +G +F +++NPF WM ++I L+ + NFFE RV +YQ+ Sbjct: 292 LECLGCSKIF-HSKNPFNWM-DLISLQGKTNFFEKRVADYQKSG 333 >gi|297805560|ref|XP_002870664.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp. lyrata] gi|297316500|gb|EFH46923.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp. lyrata] Length = 333 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 93/327 (28%), Positives = 157/327 (48%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P++Y WE Y A + W EV + D W+ N L++DER IK Sbjct: 9 ILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLSNDERHFIK 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E R + Q E +HS + ++ + D Sbjct: 67 HVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIKDNK 126 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF +P +T KA WA+++ + Q F + + F V EG++ Sbjct: 127 ERDHLFRAIETIPCVTKKAEWAMKWI-------------NGSQSFAERIVAFACV-EGIF 172 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ TK +++ Sbjct: 173 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLR-------TKLDEER 225 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++++ +A +E + + +P VG+N QY++F+A+R +G ++ + NPF Sbjct: 226 LKSIVCDAVEIEREFVCDALPCALVGMNRELMSQYIEFVADRLLTALGCGKVYGVS-NPF 284 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV EYQ+ + Sbjct: 285 DWM-ELISLQGKTNFFEKRVGEYQKAS 310 >gi|9633651|ref|NP_051729.1| ribonucleotide reductase, small subunit [Myxoma virus] gi|6523870|gb|AAF14903.1|AF170726_19 ribonucleotide reductase, small subunit [Myxoma virus] gi|301134541|gb|ADK63655.1| M015L [Myxoma virus] Length = 322 Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 97/330 (29%), Positives = 159/330 (48%), Gaps = 28/330 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++D+ +L D + P++Y W Y A + W P EV + DL W+ LT DE Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWRV---LTPDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 +D E LF + I KA W ++ ++ D + + L F V Sbjct: 118 IIDLQEKEKLFKAIETMDCIKQKAEWVQKW------------IRNKDATYAERLIAFASV 165 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + KM G+ + I RDE LH +F + +K P Sbjct: 166 -EGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFKHLK-HTPS---- 219 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +++ +++ EA ++E + E +P +G+N QY++F+A+R ++G +F Sbjct: 220 --EERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSA 277 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 T NPF +M E I L+ + NFFE RV++YQ+ Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQR 305 >gi|312216546|emb|CBX96496.1| similar to ribonucleoside-diphosphate reductase subunit M2 [Leptosphaeria maculans] Length = 410 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 150/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W + L DDER I L FFA+S+ Sbjct: 83 LFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNKR--LNDDERFFISHVLAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E VHS T+ +I + + + LFN Sbjct: 141 GIVNENLVERFSGEVQIPEARCFYGFQIMMENVHSETYSLLIDTYISEPRQRKYLFNAID 200 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WAL++ D + F L F V EG++F FA I Sbjct: 201 NIPCIRKKADWALRWIS------------DKNSTFANRLVAFAAV-EGIFFSGSFASIFW 247 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE +H +F + + + T+ ++ + ++ EA Sbjct: 248 LKKRGLMPGLTFSNELISRDEGMHTDFACLLFSLLN-------TRPSKESVQAIITEAVE 300 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G + T NPF +M E I L Sbjct: 301 IEKEFLSDALPCALLGMNATLMCQYIEFVADRLLLSLGNTKFYNAT-NPFDFM-ENISLA 358 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 359 GKTNFFEKRVGDYQKAG 375 >gi|148232385|ref|NP_001085389.1| ribonucleotide reductase M2, gene 1 [Xenopus laevis] gi|48735122|gb|AAH72071.1| MGC78958 protein [Xenopus laevis] Length = 406 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/330 (29%), Positives = 161/330 (48%), Gaps = 28/330 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + D+ +L +LP++Y W+ Y A + W EV + DL W++ L +E Sbjct: 84 IQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---LKPEE 140 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 141 RYFIAYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLLIDTY 200 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D E LFN +P + KA W+L++ +P + + L F V Sbjct: 201 IKDPKEREFLFNAIETLPCVKKKAEWSLRWISDREAP------------YCERLVAFAAV 248 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + M G+ + I RDE LH +F + H+ K Sbjct: 249 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFK-------HVVHK 300 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +Q+ R ++ +A +E + E +P +G+N +QY++F+A+R ++G + +FK Sbjct: 301 PSEQRVREIIIDAVKIEQEFLTEALPVELIGMNCTLMKQYIEFVADRLLLELGFKKIFK- 359 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +ENPF +M E I L+ + NFFE +V EYQ+ Sbjct: 360 SENPFDFM-ENISLEGKTNFFEKKVGEYQK 388 >gi|149637725|ref|XP_001508783.1| PREDICTED: similar to Ribonucleotide reductase M2 B (TP53 inducible) [Ornithorhynchus anatinus] Length = 401 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 156/317 (49%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W N L +E+ I L FFA+S+ Sbjct: 94 IFPIQYPEIWKMYKQAQASFWTAEEVDLSKDLPHW---NKLKSEEKYFISHILAFFAASD 150 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E VHS + +I + D + LFN Sbjct: 151 GIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIKDPKKREFLFNAIE 210 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+W+L++ S T G + V + EG++F FA I Sbjct: 211 TMPFVKKKADWSLRWIADRQS---TFGER----------VVAFAAVEGIFFSGSFAAIFW 257 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + +L K + K + ++ +A Sbjct: 258 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ-------YLVKKPSEDKVKEIIIDAVE 310 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P G +G+N +QY++F+A+R ++G +F +++NPF +M E I L+ Sbjct: 311 IEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLVELGFSKVF-HSDNPFDFM-ENISLE 368 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV+EYQ+ A Sbjct: 369 GKTNFFEKRVSEYQRFA 385 >gi|297668213|ref|XP_002812343.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Pongo abelii] Length = 449 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 160/331 (48%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 126 DVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 182 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 183 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 242 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + V + Sbjct: 243 YIKDPKEREFLFNAIETLPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 289 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 290 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 342 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+ Sbjct: 343 KPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 402 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 403 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 431 >gi|327261309|ref|XP_003215473.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 1 [Anolis carolinensis] Length = 394 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 157/331 (47%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N D+ +L + P++Y W+ Y A + W EV + DL W+S L D Sbjct: 71 NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 127 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 128 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 187 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WA+++ G K A + V + Sbjct: 188 YIKDPKEREYLFNAIETLPCVKRKADWAMRWI----------GDKHAT---YGERVVAFA 234 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 235 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 287 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G ++K Sbjct: 288 KPSEERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK 347 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 348 -AENPFDFM-ENISLEGKTNFFEKRVGEYQR 376 >gi|242095388|ref|XP_002438184.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor] gi|241916407|gb|EER89551.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor] Length = 339 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 154/327 (47%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L SD + P+++ WE Y A + W EV + D W L+ DER I Sbjct: 17 LLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSSDARHWD--EALSPDERHFIS 74 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E R + Q E +HS + ++ + D+ Sbjct: 75 HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDA 134 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF VP++ KA+WA+++ D + F + L F V EG++ Sbjct: 135 EKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 180 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + ++ +K + + Sbjct: 181 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYELLR-------SKLDEAR 233 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R ++ +A +E + + +P VG+N QY++F+A+R +G + ++ T NPF Sbjct: 234 VREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGCKKMYNAT-NPF 292 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV +YQ+ + Sbjct: 293 DWM-ELISLQGKTNFFEKRVGDYQKAS 318 >gi|293343290|ref|XP_002725449.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Rattus norvegicus] gi|293355176|ref|XP_002728627.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Rattus norvegicus] Length = 390 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/315 (30%), Positives = 153/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W++ L DER I L FFA+S+ Sbjct: 83 VFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPDERHFISHVLAFFAASD 139 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 140 GIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIE 199 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL++ G K+A + V + EG++F FA I Sbjct: 200 TMPCVKKKADWALRWI----------GDKEAT---YGERVVAFAAVEGIFFSGSFASIFW 246 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL K +Q+ + ++ A Sbjct: 247 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPSEQRVKEIITNAVR 299 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N +QY++F+A+R ++G +FK ENPF +M E I L+ Sbjct: 300 IEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFK-VENPFDFM-ENISLE 357 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 358 GKTNFFEKRVGEYQR 372 >gi|168015485|ref|XP_001760281.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688661|gb|EDQ75037.1| predicted protein [Physcomitrella patens subsp. patens] Length = 330 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 93/317 (29%), Positives = 149/317 (47%), Gaps = 29/317 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY WE Y A + W EV + D W++ LTD+ER I L FFA+S+ Sbjct: 19 MFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWEA---LTDNERHFISHVLAFFAASD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + + PE R + Q E +HS + ++ + D E LFN Sbjct: 76 GIVLENLAIRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYIKDHAEKNRLFNAIE 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P +T KA WAL++ + S F + + F V EG++F F I Sbjct: 136 TIPCVTKKAEWALKWIHSAGS-------------FAERILAFACV-EGIFFSGSFCAIFW 181 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + K + + ++ EA + Sbjct: 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLN-------NKLSEDRVYEIVCEAVV 234 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E + VG+N +Y+ F+A+R +G + + NPF WM E+I L+ Sbjct: 235 IEQEFVCEALSCDLVGMNKTLMSEYIDFVADRLLVSLGYPKKYN-SHNPFDWM-ELISLQ 292 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ + Sbjct: 293 GKTNFFEKRVGEYQKAS 309 >gi|212274629|ref|NP_001130908.1| hypothetical protein LOC100192012 [Zea mays] gi|195636980|gb|ACG37958.1| ribonucleoside-diphosphate reductase small chain [Zea mays] Length = 339 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 153/327 (46%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L SD + P++Y WE Y A + W EV + D W + L+ DER I Sbjct: 17 LLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFIS 74 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140 L FFA+S+ +V N+ + E R + Q E +HS + ++ + G Sbjct: 75 HVLAFFAASDGIVLENLASRFMSDVQAAEARAFYGFQIAIENIHSEMYSLLLETYIRDGT 134 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 ++ LF VP++ KA+WA+++ D + F + L F V EG++ Sbjct: 135 EKDRLFRAIETVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 180 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ K + + Sbjct: 181 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLR-------GKLDESR 233 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R ++ +A +E + + +P VG+N QY++F+A+R +G ++ NPF Sbjct: 234 VREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGHRKMYN-VANPF 292 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV EYQ+ + Sbjct: 293 DWM-ELISLQGKTNFFEKRVGEYQKAS 318 >gi|170664480|gb|ACB28637.1| small subunit ribonucleotide reductase [Myxoma virus] gi|170664652|gb|ACB28808.1| small subunit ribonucleotide reductase [recombinant virus 6918VP60-T2] Length = 322 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/330 (29%), Positives = 160/330 (48%), Gaps = 28/330 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++D+ +L D + P++Y W Y A + W P EV + DL W+ LT DE Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWRV---LTPDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS- 137 + IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117 Query: 138 -LGLDEGE-LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 + L E E LF + I KA W ++ ++ D + + L F V Sbjct: 118 IINLQEKEKLFKAIETMDCIKQKAEWVQKW------------IRNKDATYAERLIAFASV 165 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + KM G+ + I RDE LH +F + +K P Sbjct: 166 -EGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFKHLK-HTPS---- 219 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +++ +++ EA ++E + E +P +G+N QY++F+A+R ++G +F Sbjct: 220 --EERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSA 277 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 T NPF +M E I L+ + NFFE RV++YQ+ Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQR 305 >gi|167519412|ref|XP_001744046.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778008|gb|EDQ91624.1| predicted protein [Monosiga brevicollis MX1] Length = 329 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 154/317 (48%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP+++ W+ Y A + W EV + DL W N L DE+ IK L FFA+S+ Sbjct: 22 ILPIQHDAIWKMYKKAEASFWTVEEVDLGRDLVDW---NKLNKDEQFFIKHVLAFFAASD 78 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS + +I + D E LFN Sbjct: 79 GIVNENLVERFMTEVQLPEARCFYGFQIAIENIHSEMYSRLIETYVNDSAEKDSLFNAIE 138 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P++ KA WA+++ D+ + V + EG++F FA I Sbjct: 139 TLPAVRRKAEWAMRWISH-------------DKASFGERVVAFAAVEGIFFSGSFAAIFW 185 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + +K + +++ ++ +A Sbjct: 186 LKKRGLMPGLTFSNELISRDEGLHTDFACLMFSMLK-------KRPSKERVTGIIMDAVE 238 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P G +G+NA +QY++F+++R +G E +F +ENPF +M E I ++ Sbjct: 239 IEQDFLTNALPCGLLGMNATLMKQYIEFVSDRLLVALGCEKIFN-SENPFDFM-ESISIE 296 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ Sbjct: 297 GKTNFFEKRVGEYQKAG 313 >gi|146418573|ref|XP_001485252.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC 6260] gi|146390725|gb|EDK38883.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC 6260] Length = 418 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/327 (30%), Positives = 156/327 (47%), Gaps = 29/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M N R V + P+KY W+ Y A + W E+ + D+ W N L D+ER I Sbjct: 95 MENTRRFV--MFPIKYHEIWKMYKKAEASFWTAEEIDLGKDMHDWN--NRLNDNERYFIS 150 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 151 RILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPK 210 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA+WAL++ D D F + L F V EG++ Sbjct: 211 EADFLFNAIENIPCIKKKADWALRWIN------------DDDALFGERLVAFAAV-EGIF 257 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F FA I L + M G++ + I RDE LH +F + + HL + + Sbjct: 258 FSGSFASIFWLKKRGLMPGLSFSNELICRDEGLHTDFACLLFS-------HLQNRPDPEI 310 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E + + +P +G+N QY++F+A+R +G + ++ NPF Sbjct: 311 VEKIITEAVDIEKEFFTDALPISLLGMNCKLMCQYVEFVADRLLVALGNKKIYNVA-NPF 369 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M E I L + NFFE RV++YQ+ Sbjct: 370 DFM-ENISLAGKTNFFEKRVSDYQKAG 395 >gi|269798663|ref|YP_003312563.1| ribonucleotide reductase [Veillonella parvula DSM 2008] gi|294792661|ref|ZP_06757808.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 6_1_27] gi|269095292|gb|ACZ25283.1| ribonucleotide reductase [Veillonella parvula DSM 2008] gi|294456560|gb|EFG24923.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 6_1_27] Length = 342 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/320 (27%), Positives = 160/320 (50%), Gaps = 16/320 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ + ++++ +R + Sbjct: 89 SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDEWRTDKT 147 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + + Q S D + L + + EG++FY+GF+ +L R Sbjct: 148 LLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIYFYSGFSFFYTLARQ 199 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM + ++YI RDE HL ++I +++ E P L+T E + K M+ + EIA Sbjct: 200 GKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAKITDMIRQGAENEIA 259 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333 + +GLN E+Y++++AN R IGL L+ + +NP W+ +L K Sbjct: 260 WGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNPMEWIESFSNLNSTK 319 Query: 334 -NFFETRVTEYQQGAELKWD 352 +FFE +VT Y + A +D Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339 >gi|77748199|gb|AAI06683.1| MGC78958 protein [Xenopus laevis] Length = 406 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/330 (29%), Positives = 161/330 (48%), Gaps = 28/330 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + D+ +L +LP++Y W+ Y A + W EV + DL W++ L +E Sbjct: 84 IQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---LKPEE 140 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 141 RYFISYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLLIDTY 200 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D E LFN +P + KA W+L++ +P + + L F V Sbjct: 201 IKDPKEREFLFNAIETLPCVKKKAEWSLRWISDREAP------------YCERLVAFAAV 248 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + M G+ + I RDE LH +F + H+ K Sbjct: 249 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFK-------HVVHK 300 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +Q+ R ++ +A +E + E +P +G+N +QY++F+A+R ++G + +FK Sbjct: 301 PSEQRVREIIIDAVKIEQEFLIEALPVELIGMNCTLMKQYIEFVADRLLLELGFKKIFK- 359 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +ENPF +M E I L+ + NFFE +V EYQ+ Sbjct: 360 SENPFDFM-ENISLEGKTNFFEKKVGEYQK 388 >gi|303228685|ref|ZP_07315510.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-134-V-Col7a] gi|303230495|ref|ZP_07317254.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-049-V-Sch6] gi|302514861|gb|EFL56844.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-049-V-Sch6] gi|302516665|gb|EFL58582.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-134-V-Col7a] Length = 342 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/320 (27%), Positives = 160/320 (50%), Gaps = 16/320 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ + ++++ +R + Sbjct: 89 SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDEWRTDKT 147 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + + Q S D + L + + EG++FY+GF+ +L R Sbjct: 148 LLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIYFYSGFSFFYTLARQ 199 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM + ++YI RDE HL ++I +++ E P L+T E + K M+ + EIA Sbjct: 200 GKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAKITDMIRQGAENEIA 259 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333 + +GLN E+Y++++AN R IGL L+ + +NP W+ +L K Sbjct: 260 WGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNPMEWIESFSNLNSTK 319 Query: 334 -NFFETRVTEYQQGAELKWD 352 +FFE +VT Y + A +D Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339 >gi|156387377|ref|XP_001634180.1| predicted protein [Nematostella vectensis] gi|156221260|gb|EDO42117.1| predicted protein [Nematostella vectensis] Length = 341 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/338 (28%), Positives = 159/338 (47%), Gaps = 28/338 (8%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + R N +D+ +L +LP++Y W+ Y A + W EV + D + Sbjct: 13 AKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDFAK-- 70 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L DDER+ + L FFA+S+ +V N+V + + PE R + Q E +HS + Sbjct: 71 -LNDDERMFVSHVLAFFAASDGIVNENLVECFSQEVQIPEARCFYGFQIAIENIHSEMYS 129 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 +I SL D+ E LFN +P + KA+WAL + + F + + Sbjct: 130 LLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWINPQRA------------SFGERI 177 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 F V EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 178 IAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC-------LMY 229 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 +L K ++ R ++ +A ++E + +P +G+N QY++F+A+R + Sbjct: 230 KYLVNKPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVALNC 289 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 + ++ ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 290 QKVYN-VENPFDFM-ENISLEGKTNFFEKRVGEYQKSG 325 >gi|4557845|ref|NP_001025.1| ribonucleoside-diphosphate reductase subunit M2 isoform 2 [Homo sapiens] gi|400979|sp|P31350|RIR2_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|36155|emb|CAA42181.1| small subunit ribonucleotide reductase [Homo sapiens] gi|251637|gb|AAA09577.1| ribonucleotide reductase R2 subunit [Homo sapiens] gi|12804875|gb|AAH01886.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens] gi|14029165|gb|AAK51163.1| ribonucleotide reductase M2 subunit [Homo sapiens] gi|20988810|gb|AAH30154.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens] gi|62702173|gb|AAX93099.1| unknown [Homo sapiens] gi|123981920|gb|ABM82789.1| ribonucleotide reductase M2 polypeptide [synthetic construct] gi|123996753|gb|ABM85978.1| ribonucleotide reductase M2 polypeptide [synthetic construct] gi|189053955|dbj|BAG36462.1| unnamed protein product [Homo sapiens] gi|261861600|dbj|BAI47322.1| ribonucleotide reductase M2 [synthetic construct] Length = 389 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 66 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 122 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 123 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 182 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + V + Sbjct: 183 YIKDPKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 229 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 230 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 282 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+ Sbjct: 283 KPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 342 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 343 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 371 >gi|327261311|ref|XP_003215474.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 2 [Anolis carolinensis] Length = 390 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 157/331 (47%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N D+ +L + P++Y W+ Y A + W EV + DL W+S L D Sbjct: 67 NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 123 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 124 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 183 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WA+++ G K A + V + Sbjct: 184 YIKDPKEREYLFNAIETLPCVKRKADWAMRWI----------GDKHAT---YGERVVAFA 230 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 231 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 283 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G ++K Sbjct: 284 KPSEERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK 343 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 344 -AENPFDFM-ENISLEGKTNFFEKRVGEYQR 372 >gi|194690416|gb|ACF79292.1| unknown [Zea mays] gi|194704028|gb|ACF86098.1| unknown [Zea mays] gi|195619132|gb|ACG31396.1| ribonucleoside-diphosphate reductase small chain [Zea mays] gi|223943167|gb|ACN25667.1| unknown [Zea mays] Length = 339 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 153/327 (46%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L SD + P++Y WE Y A + W EV + D W + L+ DER I Sbjct: 17 LLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFIS 74 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140 L FFA+S+ +V N+ + E R + Q E +HS + ++ + G Sbjct: 75 HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGT 134 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 ++ LF VP++ KA+WA+++ D + F + L F V EG++ Sbjct: 135 EKDRLFRAIETVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 180 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ K + + Sbjct: 181 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLR-------GKLDESR 233 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R ++ +A +E + + +P VG+N QY++F+A+R +G ++ NPF Sbjct: 234 VREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGHRKMYN-VANPF 292 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV EYQ+ + Sbjct: 293 DWM-ELISLQGKTNFFEKRVGEYQKAS 318 >gi|68481406|ref|XP_715342.1| hypothetical protein CaO19.5801 [Candida albicans SC5314] gi|68481537|ref|XP_715277.1| hypothetical protein CaO19.13223 [Candida albicans SC5314] gi|46436893|gb|EAK96248.1| hypothetical protein CaO19.13223 [Candida albicans SC5314] gi|46436961|gb|EAK96315.1| hypothetical protein CaO19.5801 [Candida albicans SC5314] gi|238882096|gb|EEQ45734.1| ribonucleoside-diphosphate reductase small chain 1 [Candida albicans WO-1] Length = 413 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 150/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W E+ + DL W +K L ++ER I R L FFA+S+ Sbjct: 102 MFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWNNK--LNENERYFISRVLAFFAASD 159 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE + + Q E +HS T+ +I + D E LFN Sbjct: 160 GIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIKDPQEADYLFNAIA 219 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D+ + V + EG++F FA I Sbjct: 220 NIPCIQKKADWAIKWIQD-------------DEALYGERLVAFAAVEGIFFSGSFASIFW 266 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL + + ++ EA Sbjct: 267 LKKRGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLQNRPSPEIVERIITEAVD 319 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E Y + +P +G+N QY++F+A+R +G + ++ T NPF +M E I L Sbjct: 320 VEKEYFTDALPVSLLGMNCNLMCQYIEFVADRLLLALGNKKVYNVT-NPFDFM-ENISLA 377 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 378 GKTNFFEKRVSDYQKAG 394 >gi|168179222|ref|ZP_02613886.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum NCTC 2916] gi|182669722|gb|EDT81698.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum NCTC 2916] Length = 342 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 166/321 (51%), Gaps = 18/321 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYSWASDFYRTMLNNFWIPEEISLNEDI---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDEH 147 Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + + + A Y + P FL+ + Y++ EG++FY+GF+ +L R Sbjct: 148 LLERNKFIAGIYEKFNKEPEI--------HNFLRVIMANYIL-EGIYFYSGFSFFYTLAR 198 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 K+ + ++YI RDE HL ++I ++K EN H++T+E +++ R M+ EI Sbjct: 199 QGKLTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEEFRQMMRIGVEHEI 258 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332 + +GLN E+Y+++++N R IGL+PL+ + ++P W+ L Sbjct: 259 QWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYPEINKHPMEWIDSFSKLNST 318 Query: 333 K-NFFETRVTEYQQGAELKWD 352 K +FFE +VT Y + A +D Sbjct: 319 KTDFFEAKVTNYTKAAAFDFD 339 >gi|238018468|ref|ZP_04598894.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748] gi|237864939|gb|EEP66229.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748] Length = 342 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/320 (27%), Positives = 160/320 (50%), Gaps = 16/320 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYDWANQMYRTMLNNFWIPEEISLNEDV---KQFPYLTDYERRAFDKIIAFLNFLDSIQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ + ++++ +R + Sbjct: 89 SENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPITRDKIYDEWRTDKT 147 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + + Q S D + L + + EG++FY+GF+ +L R Sbjct: 148 LLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIYFYSGFSFFYTLARQ 199 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM + ++YI RDE HL ++I +++ E P L+T E + K M+ + EIA Sbjct: 200 GKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAKITDMIRQGAENEIA 259 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333 + +GLN E+Y++++AN R IGL L+ + +NP W+ +L K Sbjct: 260 WGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNPMEWIESFSNLNSTK 319 Query: 334 -NFFETRVTEYQQGAELKWD 352 +FFE +VT Y + A +D Sbjct: 320 TDFFEAKVTNYTKAAAFDFD 339 >gi|269958883|ref|YP_003328672.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma centrale str. Israel] gi|269848714|gb|ACZ49358.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma centrale str. Israel] Length = 332 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 93/325 (28%), Positives = 162/325 (49%), Gaps = 26/325 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+K L++ E+ ++ + FF ++ + Sbjct: 20 PFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKTK--LSEQEKNLLVQIFRFFTQAD-I 76 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y ++ P ++ AF E VH + Y++ ++G+ E E + + + Sbjct: 77 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFLKFE 134 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ ++ ++ K + + L VF EG+ + FA +L+ R Sbjct: 135 VMKKKYDYMQRFEES---------RKGDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 185 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + + RDE+LH I + N EN +W R L+ A + + Sbjct: 186 FGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDANL----RAELYGACRVIV 241 Query: 274 AYAHETMPKGFV-----GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 + E + F GL+A ++Y+++IANRR Q+ LEP++ NP PW+ E+++ Sbjct: 242 SLEDEFIDLAFALGDVEGLSASEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILN 301 Query: 329 LKKEKNFFETRVTEYQQGA-ELKWD 352 + NFFE RVTEY + A E WD Sbjct: 302 GVEHTNFFENRVTEYSRAATEGTWD 326 >gi|119621373|gb|EAX00968.1| hCG23833, isoform CRA_b [Homo sapiens] gi|119621374|gb|EAX00969.1| hCG23833, isoform CRA_b [Homo sapiens] Length = 449 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 126 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 182 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 183 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 242 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + V + Sbjct: 243 YIKDPKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 289 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 290 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 342 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+ Sbjct: 343 KPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 402 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 403 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 431 >gi|327298815|ref|XP_003234101.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum CBS 118892] gi|326464279|gb|EGD89732.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum CBS 118892] Length = 408 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 149/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ W N L DDER I L FFA+S+ Sbjct: 89 LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + ++ + LF Sbjct: 147 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 206 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D + F Q L F V EG++F FA I Sbjct: 207 TIPCIRKKADWAIRWIQ------------DKNSTFAQRLVAFAAV-EGIFFSGSFASIFW 253 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ EA Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNYRPDPSAVEAIITEAVT 306 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G + + T NPF +M I L Sbjct: 307 IEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKFYNTT-NPFDFMDN-ISLA 364 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 365 GKTNFFEKRVGDYQKAG 381 >gi|218289144|ref|ZP_03493380.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius LAA1] gi|218240727|gb|EED07906.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius LAA1] Length = 345 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/321 (29%), Positives = 165/321 (51%), Gaps = 18/321 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA++ Y + NN W+P E+P+ DD + + L+DDER + L F +SL+ Sbjct: 36 IKYEWAYKLYRAMMNNFWIPEEIPLADDA---RQYDLLSDDERRSYNKVLSFLIFMDSLL 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154 +N+ I +++ PE L AF+EAVHS ++ Y++ S+ +++N +R Sbjct: 93 THNLP-NINEYITAPEVNLCLTVHAFQEAVHSQSYGYVLDSVVNPATRDQIYNEWRNDDH 151 Query: 155 ITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + + + + + + +P+ D+ ++ + Y++ EG++FY GF LGR Sbjct: 152 LLRRNQFITDLFEEFIENPT--------DRNLMKTIVANYIL-EGVYFYAGFGFFFVLGR 202 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM+G + ++I RDE HL ++ ++I ENP + T + +++ M+ A EI Sbjct: 203 QGKMLGTVSEIKFIQRDELTHLAIFRNLYHEIVRENPGIVTPDMEEEFVEMMRTAVQHEI 262 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332 A+ VGL + Y++++AN R + L L+ + E+P PWM + Sbjct: 263 AWGQYVTQGKIVGLTDALIDAYIKYLANLRLQSLNLPILYPEIKEHPMPWMDSFAAINSH 322 Query: 333 K-NFFETRVTEYQQGAELKWD 352 K +FFE RVT Y + L WD Sbjct: 323 KTDFFEQRVTNYTKAGNLNWD 343 >gi|260064013|ref|NP_001159403.1| ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Homo sapiens] Length = 449 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 126 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 182 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 183 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 242 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + V + Sbjct: 243 YIKDPKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 289 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 290 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 342 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+ Sbjct: 343 KPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 402 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 403 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 431 >gi|76630259|ref|XP_584910.2| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] gi|297480610|ref|XP_002691527.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] gi|296482361|gb|DAA24476.1| ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] Length = 389 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/331 (29%), Positives = 160/331 (48%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L + Sbjct: 66 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKSE 122 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 123 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 182 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ + + T G + V + Sbjct: 183 YIKDSKEREFLFNAIETMPCVKKKADWALRW---IGDKAATYGER----------VVAFA 229 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 230 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLH 282 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R ++G +F+ Sbjct: 283 KPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 342 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 343 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 371 >gi|258511567|ref|YP_003185001.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478293|gb|ACV58612.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 369 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 94/321 (29%), Positives = 165/321 (51%), Gaps = 18/321 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA++ Y + NN W+P E+P+ DD + + L+DDER + L F +SL+ Sbjct: 60 IKYEWAYKLYRAMMNNFWIPEEIPLADDA---RQYDLLSDDERRSYNKVLSFLIFMDSLL 116 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154 +N+ I +++ PE L AF+EAVHS ++ Y++ S+ +++N +R Sbjct: 117 THNLP-NINEYITAPEVNLCLTVHAFQEAVHSQSYGYVLDSVVNPATRDQIYNEWRNDDH 175 Query: 155 ITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + + + + + + +P+ D+ ++ + Y++ EG++FY GF LGR Sbjct: 176 LLRRNQFITDLFEEFIENPT--------DRNLMKTIVANYIL-EGVYFYAGFGFFFVLGR 226 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM+G + ++I RDE HL ++ ++I ENP + T + +++ M+ A EI Sbjct: 227 QGKMLGTVSEIKFIQRDELTHLAIFRNLYHEIIRENPGIVTPDMEEEFVEMMRTAVQHEI 286 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332 A+ VGL + Y++++AN R + L L+ + E+P PWM + Sbjct: 287 AWGQYVTQGKIVGLTDALIDAYIKYLANLRLQSLNLPILYPEIKEHPMPWMDSFAAINSH 346 Query: 333 K-NFFETRVTEYQQGAELKWD 352 K +FFE RVT Y + L WD Sbjct: 347 KTDFFEQRVTNYTKAGNLNWD 367 >gi|118089009|ref|XP_001231545.1| PREDICTED: similar to small subunit ribonucleotide reductase isoform 1 [Gallus gallus] Length = 392 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 162/344 (47%), Gaps = 31/344 (9%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 T L P Q +++ +L + P++Y W+ Y A + W EV + D Sbjct: 59 TALCPPQVAR---GAEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKD 115 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W+S L +E+ I L FFA+S+ +V N+V + + E R + Q E Sbjct: 116 LQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAME 172 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 +HS + +I + D E LFN +P + KA+WA+++ G K A Sbjct: 173 NIHSEMYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWAIRWI----------GDKKA 222 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 223 T---YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLM 279 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 HL K +++ + ++ A L+E + E +P +G+N +QY++F+A+ Sbjct: 280 FK-------HLIRKPSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVAD 332 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 R ++G ++K ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 333 RLMLELGFRKIYK-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 374 >gi|241951066|ref|XP_002418255.1| ribonucleoside-diphosphate reductase small chain 1, putative; ribonucleotide reductase r2 subunit 1, putative; ribonucleotide reductase small subunit 1, putative [Candida dubliniensis CD36] gi|223641594|emb|CAX43555.1| ribonucleoside-diphosphate reductase small chain 1, putative [Candida dubliniensis CD36] Length = 413 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/317 (28%), Positives = 150/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W E+ + DL W +K L ++ER + R L FFA+S+ Sbjct: 102 MFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWNNK--LNENERYFVSRVLAFFAASD 159 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE + + Q E +HS T+ +I + D E LFN Sbjct: 160 GIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIKDPQEADYLFNAIA 219 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D+ + V + EG++F FA I Sbjct: 220 NIPCIQKKADWAIKWIQD-------------DEALYGERLVAFAAVEGIFFSGSFASIFW 266 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL + + ++ EA Sbjct: 267 LKKRGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLQNRPSPEIVEKIITEAVD 319 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E Y + +P +G+N QY++F+A+R +G + ++ T NPF +M E I L Sbjct: 320 VEKEYFTDALPVSLLGMNCNLMCQYIEFVADRLLLALGNKKVYNVT-NPFDFM-ENISLA 377 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 378 GKTNFFEKRVSDYQKAG 394 >gi|326472581|gb|EGD96590.1| ribonucleotide reductase small subunit RnrA [Trichophyton tonsurans CBS 112818] Length = 408 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 149/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D+ W N L DDER I L FFA+S+ Sbjct: 89 LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + ++ + LF Sbjct: 147 GIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 206 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D + F Q L F V EG++F FA I Sbjct: 207 TIPCIRKKADWAIRWIQ------------DKNSTFSQRLVAFAAV-EGIFFSGSFASIFW 253 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ EA Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNYRPDPNAVEAIITEAVT 306 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G + + T NPF +M I L Sbjct: 307 IEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKFYNTT-NPFDFMDN-ISLA 364 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 365 GKTNFFEKRVGDYQKAG 381 >gi|169779219|ref|XP_001824074.1| ribonucleoside-diphosphate reductase small chain [Aspergillus oryzae RIB40] gi|238499845|ref|XP_002381157.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus flavus NRRL3357] gi|83772813|dbj|BAE62941.1| unnamed protein product [Aspergillus oryzae] gi|220692910|gb|EED49256.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus flavus NRRL3357] Length = 405 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 150/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDER I R L FFA+S+ Sbjct: 86 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWH--NRLNDDERFFISRVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +H+ T+ +I + + + LF+ Sbjct: 144 GIVNENLLERFSGEVQIPEARCFYGFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAID 203 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D + F Q L F V EG++F FA I Sbjct: 204 TIPCIRKKADWAIRWIQ------------DQESTFGQRLVAFAAV-EGIFFSGSFASIFW 250 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + Q ++ EA Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPDPQIVEDVIVEAVS 303 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ QY++F+A+R +G F T NPF +M I L Sbjct: 304 IEKEFLTDALPCALLGMNSNLMCQYIEFVADRLLVALGNNKYFNAT-NPFDFMDN-ISLA 361 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 362 GKTNFFEKRVGDYQKAG 378 >gi|156847978|ref|XP_001646872.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM 70294] gi|156117553|gb|EDO19014.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM 70294] Length = 400 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/342 (30%), Positives = 164/342 (47%), Gaps = 29/342 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 +Q E + ++ +L A + L P++Y +E Y A + W E+ + DL W Sbjct: 63 VQRHELKEKETEEPLLVADPNRKILFPIQYPDIYEAYKRAEASFWTAEEIDLSKDLHDWN 122 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N + ++ER I R L FFA+S+ +V N+ E + + Q E +HS Sbjct: 123 --NRMNENERFFISRVLAFFAASDGIVNENLTENFSVEAQILEAKCFYGFQIMIENIHSE 180 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 T+ +I + D E LFN +P I KA WAL++ D++ F Sbjct: 181 TYSLLIDTYIKDPKESQYLFNAIETIPQIKEKAEWALRWIN------------DSEALFA 228 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + L F + EG++F FA I L + M G+ + I RDE LH +F + + IK Sbjct: 229 ERLVAFAAI-EGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHIK 287 Query: 247 IE-NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 + +P + K ++ EA +E Y + +P +G+NA QY++F+A+R Sbjct: 288 NKPDPAIVEK--------IVTEAVEIEKRYFTDALPVALLGMNADLMNQYVEFVADRLLV 339 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 G E +FK ENPF +M E I L + NFFE RV++YQ+ + Sbjct: 340 AFGNEKVFK-VENPFDFM-ENISLAGKTNFFEKRVSDYQKAS 379 >gi|124010268|ref|ZP_01694921.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla marina ATCC 23134] gi|123983653|gb|EAY24093.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla marina ATCC 23134] Length = 330 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/318 (29%), Positives = 153/318 (48%), Gaps = 30/318 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++ W+ Y A + W E+ + DL W K L DDER I L FFA+S+ Sbjct: 19 LFPIQQNDIWQMYKQAEASFWTAEEIDLAQDLKDWDEK--LNDDERHFITHVLAFFAASD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + +PE R + Q E +H+ T+ +I + D E LFN Sbjct: 77 GIVNENLAVNFLEEVKSPEARCFYGFQVAIENIHAETYSLLIDTYIKDADEKHRLFNALE 136 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP + KA WAL++ S F + L F V EG++F F I Sbjct: 137 TVPCVKKKAEWALRWIDKGS--------------FAERLIAFAAV-EGIFFSGSFCSIFW 181 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ-IKIENPHLWTKEFQQKSRTMLHEAT 269 L + M G++ + I RDE LH +F + N IK + P+ + +++ A Sbjct: 182 LKKRGLMPGLSFSNELISRDEGLHCDFACLLYNSYIKNKLPN-------ETVVSIIKNAV 234 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E + + +P +G+N+ +Y++F+A+R ++G E + T NPF +M E+I L Sbjct: 235 EIEKEFVTDALPVKLIGMNSDLMSEYIEFVADRLLVELGCEKQYN-TANPFDFM-EMISL 292 Query: 330 KKEKNFFETRVTEYQQGA 347 + + NFFE RV+EY + Sbjct: 293 EGKTNFFEKRVSEYSKAG 310 >gi|148230557|ref|NP_001080772.1| ribonucleotide reductase M2 polypeptide [Xenopus laevis] gi|28839018|gb|AAH47975.1| Rrm2-prov protein [Xenopus laevis] Length = 386 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/341 (29%), Positives = 159/341 (46%), Gaps = 28/341 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 +P K D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 53 TPTSKVPKNPRFTDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQH 112 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L DER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 113 WES---LKTDERYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169 Query: 128 SHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D G LFN +P + KA+WAL++ +S T G + Sbjct: 170 SEMYSLLIDTYIKDPKERGFLFNAIETLPCVKKKADWALRW---ISDKQATYGER----- 221 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 222 -----VVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFR- 275 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL K +++ ++ A +E + E +P +G+N +QY++F+A+R Sbjct: 276 ------HLVHKPSEERVVQLITNAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLL 329 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ++G +FK + NPF +M E I L+ + NFFE RV EYQ+ Sbjct: 330 LELGFNKVFKAS-NPFDFM-ENISLEGKTNFFEKRVGEYQK 368 >gi|58040422|ref|YP_192386.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter oxydans 621H] gi|58002836|gb|AAW61730.1| Ribonucleoside-diphosphate reductase beta chain [Gluconobacter oxydans 621H] Length = 339 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/317 (27%), Positives = 158/317 (49%), Gaps = 24/317 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ +L+ HW+P EVP+ DD+ W LT+ ER ++ + FF S+ Sbjct: 27 PFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWH--RTLTEAERHLVTQIFRFFTQSDVE 84 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGEL--FNMYRE 151 V N+ + Y + P ++ AF E +H + +++ ++G+ E E F Y+E Sbjct: 85 V-NSAYMKYYSQVFKP-TEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETEYSAFLKYKE 142 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + + Q+ + D +E + + F EG+ + FA +L+ Sbjct: 143 MKD-------KYDFMQSFNI--------DNKREIAKTMAAFGAFMEGLQLFASFAILLNF 187 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 R NK+ G+ + + +RDE+LH I + EN +WT EF+++ + Sbjct: 188 PRFNKLKGMGQIVSWSVRDETLHCLSMIRLFRTFVRENSEIWTPEFREELTQICRTTVEH 247 Query: 272 EIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E A+ G V G+++ ++Y++FIA+RR Q+GL+P++ NP PW+ ++++ Sbjct: 248 EDAFIDLCFEMGPVEGMSSEDVKRYIRFIADRRLTQLGLDPVYGQESNPLPWIDDMLNAV 307 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE R TEY + + Sbjct: 308 EHANFFENRSTEYSRAS 324 >gi|10432587|dbj|BAB13815.1| ribonucleotide reductase small subunit [Lentinula edodes] Length = 418 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 153/317 (48%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + DL W N L D ER I R L FFA+S+ Sbjct: 104 LFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWN--NRLNDSERFFISRVLAFFAASD 161 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + E R + Q E +HS T+ +I + D E LF+ Sbjct: 162 GIVNENLLERFSNEVQVAEARCFYGFQIMMENIHSETYSLLIDTYIKDPVERDFLFDAIE 221 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WAL++ D F + L F V EG++F FA I Sbjct: 222 TIPCIKRKAEWALRWIS------------DEHSVFGERLVAFAAV-EGIFFSGSFASIFW 268 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + + M G+A + I RDE +H +F + + ++ PH T E ++ EA Sbjct: 269 MKKRGLMPGLAFSNELISRDEGMHTDFACLLFSHLR-RRPHPDTVE------RIIKEAVA 321 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G + L+ T NPF +M ++I L+ Sbjct: 322 IEQEFLTDALPVSLIGMNATLMCQYIEFVADRLLVALGNKKLYNST-NPFDFM-DMISLQ 379 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++Y + Sbjct: 380 GKTNFFEKRVSDYSKAG 396 >gi|168031987|ref|XP_001768501.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680214|gb|EDQ66652.1| predicted protein [Physcomitrella patens subsp. patens] Length = 331 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/318 (30%), Positives = 150/318 (47%), Gaps = 31/318 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY WE Y A + W EV + D W++ LTDDER I L FFA+S+ Sbjct: 20 MFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWET---LTDDERHFISHVLAFFAASD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + + PE R + Q E +HS + ++ + D+ E LFN Sbjct: 77 GIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYIKDQAEKSRLFNAIE 136 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL++ + S F + + F V EG++F F I Sbjct: 137 TIPCVARKADWALKWIDSAGS-------------FAERILAFACV-EGIFFSGSFCAIFW 182 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + L K +++ ++ EA Sbjct: 183 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYTL-------LINKLSEERVYEIVCEAVE 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL 329 +E + E + VG+N +Y+ F+A+R +G KY NPF WM E+I L Sbjct: 236 IEREFVCEALSCDLVGMNKILMSEYIDFVADRLLVSLGYRK--KYNALNPFDWM-ELISL 292 Query: 330 KKEKNFFETRVTEYQQGA 347 + + NFFE RV EYQ+ + Sbjct: 293 QGKTNFFEKRVGEYQKAS 310 >gi|149728153|ref|XP_001502384.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit M2 (Ribonucleotide reductase small subunit) (Ribonucleotide reductase small chain) [Equus caballus] Length = 425 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 97/331 (29%), Positives = 160/331 (48%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L + Sbjct: 102 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPE 158 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 159 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 218 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + V + Sbjct: 219 YIKDSKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 265 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 266 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 318 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R ++G +F+ Sbjct: 319 KPSEQRVKEIIINAVRIEQEFLTEALPVRLIGMNCALMKQYIEFVADRLLLELGFNKVFR 378 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 379 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 407 >gi|75076796|sp|Q4R7Q7|RIR2_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|67969020|dbj|BAE00865.1| unnamed protein product [Macaca fascicularis] Length = 389 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 66 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 122 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 123 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 182 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + V + Sbjct: 183 YIKDPKEREFLFNAIETMPCVEKKADWALRWI----------GDKEAT---YGERVVAFA 229 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 230 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 282 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+ Sbjct: 283 KPSEERVREIIINAVRVEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR 342 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 343 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 371 >gi|212533263|ref|XP_002146788.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium marneffei ATCC 18224] gi|210072152|gb|EEA26241.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium marneffei ATCC 18224] Length = 406 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/318 (30%), Positives = 153/318 (48%), Gaps = 29/318 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDER I L FFA+S+ Sbjct: 85 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMY 149 +V N+V + PE R + Q E +HS T+ +I + ++E + LF+ Sbjct: 143 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTY-INEPKQRTYLFDAI 201 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 +P I KA+WAL++ D + F Q L F V EG++F FA I Sbjct: 202 DNIPCIRKKADWALRWIS------------DKESTFAQRLVAFAAV-EGIFFSGSFASIF 248 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 L + M G+ + I RDE LH +F + + HL T+ + ++ +A Sbjct: 249 WLKKRGLMPGLTFSNELISRDEGLHTDFACMLFS-------HLNTRPNPKVIEDIIVDAV 301 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E + + +P +G+N+ QY++F+A+R +G + + T NPF +M E I L Sbjct: 302 AIEQEFLTDALPCALLGMNSKLMCQYIEFVADRLLVALGNKKYYNAT-NPFDFM-ENISL 359 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 360 AGKTNFFEKRVGDYQKAG 377 >gi|291336893|gb|ADD96422.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426] Length = 172 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/155 (42%), Positives = 101/155 (65%), Gaps = 1/155 (0%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 VNQ+LP K+ W+ +L + N+W P E+ M D+ WK + L+DDE+L++KR LGFFA Sbjct: 15 VNQILPHKHKSVWDNFLKSVANNWSPAEINMSTDIKQWKGDD-LSDDEKLLVKRCLGFFA 73 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 SESLVANN++L + R +++ ECRQY+LRQA+EE++H+ T S GL E+F Y+ Sbjct: 74 GSESLVANNLLLTVARWVTDAECRQYILRQAYEESLHNWTVVTCCDSFGLKVSEVFEAYQ 133 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 + SI AK ++ + T ++ F+T T + + F Sbjct: 134 NIESIKAKDDFLMGITTDVNRQGFSTKTSEGKRIF 168 >gi|15604372|ref|NP_220888.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia prowazekii str. Madrid E] gi|51473694|ref|YP_067451.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia typhi str. Wilmington] gi|3861064|emb|CAA14964.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (nrdB) [Rickettsia prowazekii] gi|51460006|gb|AAU03969.1| Ribonucleotide reductase [Rickettsia typhi str. Wilmington] gi|292572126|gb|ADE30041.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia prowazekii Rp22] Length = 324 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/319 (28%), Positives = 159/319 (49%), Gaps = 28/319 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ D+ WK LT E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLAYDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y + P ++ AF E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKP-TEVLMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ Q+ D ++ L VF EG+ + FA +L+ R Sbjct: 127 EMKDKYDYMQQFGV------------DNKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLH-EA 268 NKM G+ + + +RDE+LH N I + ENP +WT+ +++ T++H E Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +E+A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ Sbjct: 235 AFIELAFE----VGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLN 290 Query: 329 LKKEKNFFETRVTEYQQGA 347 + NFFE R TEY + A Sbjct: 291 GVEHTNFFENRATEYSKAA 309 >gi|242076364|ref|XP_002448118.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor] gi|241939301|gb|EES12446.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor] Length = 339 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/327 (27%), Positives = 154/327 (47%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L SD + P+++ WE Y A + W EV + D W + L+ DER I Sbjct: 17 LLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFIS 74 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140 L FFA+S+ +V N+ + E R + Q E +HS + ++ + G Sbjct: 75 HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGA 134 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 ++ LF VP++ KA+WA+++ D + F + L F V EG++ Sbjct: 135 EKDRLFRAIETVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 180 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ K + + Sbjct: 181 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLR-------GKLDESR 233 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R ++ +A +E + + +P VG+N QY++F+A+R +G + ++ NPF Sbjct: 234 VREIVADAVDIEREFVCDALPVALVGMNGALMSQYIEFVADRLLMALGHKKMYN-VANPF 292 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV EYQ+ + Sbjct: 293 DWM-ELISLQGKTNFFEKRVGEYQKAS 318 >gi|256081213|ref|XP_002576867.1| ribonucleoside-diphosphate reductase small chain [Schistosoma mansoni] gi|238662153|emb|CAZ33104.1| ribonucleoside-diphosphate reductase small chain, putative [Schistosoma mansoni] Length = 365 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 152/317 (47%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W Y A + W EV + D W+S L ER I L FFA+S+ Sbjct: 55 LFPIEYHDVWHFYKKAVASFWTVEEVDLSKDFIHWES---LKVGERHFISYVLAFFAASD 111 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + + PE R + Q E +HS + +I + D E LFN Sbjct: 112 GIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLLIDTYIKDSKERDFLFNAIS 171 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KA WAL + D+ F + L F V EG++F FA I Sbjct: 172 NLTCVAKKAQWALDWI------------GDSKSTFAERLVAFAAV-EGVFFSGSFAAIFW 218 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G++ + I RDE LH +F + I + P +++ +++ EA L Sbjct: 219 LKKRGLMPGLSFSNELISRDEGLHCDFACLLFKHIIKKPP-------KERVESIIREAVL 271 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N QY++FIA+R ++G E ++ +++NPF +M E I ++ Sbjct: 272 IEQEFLSEALPVSLIGMNCKLMCQYIEFIADRLLVELGYEKMY-HSDNPFDFM-ENISIE 329 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ Sbjct: 330 GKTNFFEKRVGEYQRAG 346 >gi|195119943|ref|XP_002004488.1| GI19586 [Drosophila mojavensis] gi|193909556|gb|EDW08423.1| GI19586 [Drosophila mojavensis] Length = 393 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 155/315 (49%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W LTD+ER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWAR---LTDNERHFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPQERDYLFNAVE 202 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P++ KA+WAL + +SS + G + + + EG++F FA I Sbjct: 203 TMPAVKRKADWALSW---ISSKAANFGER----------IIAFAAVEGIFFSGSFASIFW 249 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +++ ++ +A Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVMMFR-------HLVQRPSRERIIEIISDAVT 302 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R ++G+ ++ T+NPF +M E+I L Sbjct: 303 IEQEFLTDALPVNLIGMNCALMSQYIEFVADRLLVELGVGKIYN-TKNPFTFM-EMISLD 360 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 361 GKTNFFEKKVGEYQR 375 >gi|71043760|ref|NP_001020911.1| ribonucleoside-diphosphate reductase subunit M2 [Rattus norvegicus] gi|77416595|sp|Q4KLN6|RIR2_RAT RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|68533806|gb|AAH99082.1| Ribonucleotide reductase M2 [Rattus norvegicus] gi|149051013|gb|EDM03186.1| rCG61374 [Rattus norvegicus] Length = 390 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/315 (30%), Positives = 153/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W++ L DER I L FFA+S+ Sbjct: 83 VFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPDERHFISHVLAFFAASD 139 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 140 GIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIE 199 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL++ G K+A + V + EG++F FA I Sbjct: 200 TMPCVKKKADWALRWI----------GDKEAT---YGERVVAFAAVEGIFFSGSFASIFW 246 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL K +Q+ + ++ + Sbjct: 247 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPSEQRVKEIITNSVR 299 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N +QY++F+A+R ++G +FK ENPF +M E I L+ Sbjct: 300 IEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFK-VENPFDFM-ENISLE 357 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 358 GKTNFFEKRVGEYQR 372 >gi|156386903|ref|XP_001634150.1| predicted protein [Nematostella vectensis] gi|156221230|gb|EDO42087.1| predicted protein [Nematostella vectensis] Length = 384 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 96/338 (28%), Positives = 159/338 (47%), Gaps = 28/338 (8%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + R N +D+ +L +LP++Y W+ Y A + W EV + D + Sbjct: 56 AKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDFAK-- 113 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L DDER+ + L FFA+S+ +V N+V + + PE R + Q E +HS + Sbjct: 114 -LNDDERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEMYS 172 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 +I SL D+ E LFN +P + KA+WAL + + F + + Sbjct: 173 LLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWINPQRA------------SFGERI 220 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 F V EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 221 IAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC-------LMY 272 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 +L K ++ R ++ +A ++E + +P +G+N QY++F+A+R + Sbjct: 273 KYLVNKPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVALNC 332 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 + ++ ENPF +M E I L+ + NF+E RV EYQ+ Sbjct: 333 QKVYN-VENPFDFM-ENISLEGKTNFYEKRVGEYQKSG 368 >gi|34482564|emb|CAE09564.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN [Wolinella succinogenes] Length = 283 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 151/277 (54%), Gaps = 12/277 (4%) Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLT E+L R L +SL NN++ + ++++PE L+RQAFEEA+HS ++ Sbjct: 11 GLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEALHSQSYA 70 Query: 133 YIITSLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 ++ S+ + E++ M+R + +K + A Y + +P+ D L+ +F Sbjct: 71 VMVESISANTDEIYEMWRVDMQLKSKNDHIAGVYEELAKNPT--------DSAMLKAMFA 122 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 ++ EG++FY GF+ +L R+ KM+G A+ ++I RDE HL ++IN +K E P Sbjct: 123 NQIL-EGIYFYAGFSFFYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINALKKERPD 181 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L+TK +++ M +A +E A+ +GL + +Y+Q++A+ R ++G+ P Sbjct: 182 LFTKSLEEEVVEMFRKAVAVESAWGDYITQGQILGLTSEIIHEYIQYLADDRLKRVGM-P 240 Query: 312 LFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 + ++P W+ + ++K NFFE VT Y +G+ Sbjct: 241 ILYNAKHPIKWVDQFSSFNEQKTNFFEGNVTNYAKGS 277 >gi|320580024|gb|EFW94247.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR) complex [Pichia angusta DL-1] Length = 408 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 148/317 (46%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L D+ER + R L FFA+S+ Sbjct: 94 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDNERYFVSRVLAFFAASD 151 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 152 GIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYVKDPKEAEFLFNAIE 211 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ D + F + L F V EG++F FA I Sbjct: 212 TIPCIKEKAEWAMRWIN------------DEEALFAERLVAFAAV-EGIFFSGSFASIFW 258 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL ++ EA Sbjct: 259 LKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLNNTPNNDIVLKIITEAVD 311 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E Y + +P +G+N QY++F+A+R +G + + T NPF +M E I L Sbjct: 312 IEKRYFTDALPVNLLGMNCSLMCQYVEFVADRLLLSLGCKKHYNAT-NPFDFM-ENISLA 369 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 370 GKTNFFEKRVSDYQKAG 386 >gi|261419130|ref|YP_003252812.1| ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61] gi|319765947|ref|YP_004131448.1| ribonucleotide reductase [Geobacillus sp. Y412MC52] gi|261375587|gb|ACX78330.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61] gi|317110813|gb|ADU93305.1| ribonucleotide reductase [Geobacillus sp. Y412MC52] Length = 346 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 92/328 (28%), Positives = 161/328 (49%), Gaps = 19/328 (5%) Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ++N R S+V + Y WA+ KY N W P E+ M D+ K LTD E+ Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDV---KQFPQLTDREQDAF 78 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140 + +G A +S + + + ++++P ++ A +E +H+H++ Y+++SL Sbjct: 79 LKIIGLLALLDS-IQTDYAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E+F+ +R P++ + ++ + + ++ + E L VF V+ EG++ Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFV--------TNGYKAFAEEPNVEHLLRSIVFDVILEGLF 189 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENP 319 R +A LEI +A E + G++ E Y++F AN R HQ+G + P Y NP Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309 Query: 320 FPWMS--EVIDLKKEKNFFETRVTEYQQ 345 W+ E +DL K +FFE + +Y + Sbjct: 310 LRWIKAYEEVDLGK-SDFFEQKPRQYTK 336 >gi|300676950|gb|ADK26821.1| ribonucleotide reductase M2 [Zonotrichia albicollis] Length = 390 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/341 (29%), Positives = 163/341 (47%), Gaps = 30/341 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 +P+ A +R +++ +L + P++Y W+ Y A + W EV + DL Sbjct: 59 NPVSA--ERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQH 116 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +E+ I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 117 WES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 173 Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D E LFN +P + KA+WA+ + G K A Sbjct: 174 SEMYSLLIDTYIKDSQEREFLFNAIETLPCVKKKADWAMCWI----------GDKKAT-- 221 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 222 -YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 279 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL K +++ R ++ A L+E + E +P +G+N +QY++F+A+R Sbjct: 280 ------HLIHKPSEERVREIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 333 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ++G ++K ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 334 LELGFNKIYK-AENPFDFM-ENISLEGKTNFFEKRVGEYQR 372 >gi|17158292|ref|NP_477710.1| wsv188 [Shrimp white spot syndrome virus] gi|14189948|gb|AAK55515.1|AF267731_1 ribonucleotide reductase small subunit [shrimp white spot syndrome virus] gi|15021490|gb|AAK77767.1|AF369029_98 ORF98, putative ribonucleotide reductase small subunit (RR2) [shrimp white spot syndrome virus] gi|17016586|gb|AAL33192.1| wsv188 [shrimp white spot syndrome virus] gi|19481835|gb|AAL89111.1| WSSV243 [shrimp white spot syndrome virus] Length = 413 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/335 (28%), Positives = 161/335 (48%), Gaps = 30/335 (8%) Query: 17 VNVDDKRMLNARSDVNQLL--PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + VD + L R + N+ + P+ + WE Y W E+ + D W+ L Sbjct: 50 MQVDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---L 106 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + + Sbjct: 107 TQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGEL 166 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I L DE + LFN + P+I K WA+ + Q+ + L +L V Sbjct: 167 IDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIV 212 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I + + G+ ++I RDE LH +F ++ + ++ P Sbjct: 213 AFAAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTPS 272 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 +++ ++ EA +E + ++P VG+N QY++F+A++ ++GLE Sbjct: 273 ------RERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEK 326 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 + T NPFP+M I L+ + NFFE RV EYQ+ Sbjct: 327 HYNVT-NPFPFMDN-ISLENKTNFFEKRVAEYQRA 359 >gi|260909050|gb|ACX54162.1| RR2 protein [Shrimp white spot syndrome virus] gi|260909052|gb|ACX54163.1| RR2 protein [Shrimp white spot syndrome virus] gi|260909054|gb|ACX54164.1| RR2 protein [Shrimp white spot syndrome virus] gi|260909056|gb|ACX54165.1| RR2 protein [Shrimp white spot syndrome virus] Length = 349 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/335 (28%), Positives = 161/335 (48%), Gaps = 30/335 (8%) Query: 17 VNVDDKRMLNARSDVNQLL--PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + VD + L R + N+ + P+ + WE Y W E+ + D W+ L Sbjct: 35 MQVDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---L 91 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + + Sbjct: 92 TQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGEL 151 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I L DE + LFN + P+I K WA+ + Q+ + L +L V Sbjct: 152 IDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIV 197 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I + + G+ ++I RDE LH +F ++ + ++ P Sbjct: 198 AFAAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTPS 257 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 +++ ++ EA +E + ++P VG+N QY++F+A++ ++GLE Sbjct: 258 ------RERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEK 311 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 + T NPFP+M I L+ + NFFE RV EYQ+ Sbjct: 312 HYNVT-NPFPFMDN-ISLENKTNFFEKRVAEYQRA 344 >gi|327261313|ref|XP_003215475.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 3 [Anolis carolinensis] Length = 391 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/315 (30%), Positives = 152/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W+S L DE+ I L FFA+S+ Sbjct: 84 IFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPDEKYFISHILAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 141 GIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIE 200 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA+++ G K A + V + EG++F FA I Sbjct: 201 TLPCVKRKADWAMRWI----------GDKHAT---YGERVVAFAAVEGIFFSGSFASIFW 247 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL K +++ R ++ A Sbjct: 248 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPSEERVREIITNAVR 300 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N +QY++F+A+R ++G ++K ENPF +M E I L+ Sbjct: 301 IEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK-AENPFDFM-ENISLE 358 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 359 GKTNFFEKRVGEYQR 373 >gi|118089007|ref|XP_419948.2| PREDICTED: similar to small subunit ribonucleotide reductase isoform 2 [Gallus gallus] Length = 384 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/315 (29%), Positives = 153/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W+S L +E+ I L FFA+S+ Sbjct: 77 IFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPEEKYFISHVLAFFAASD 133 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 134 GIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIE 193 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA+++ G K A + V + EG++F FA I Sbjct: 194 TLPCVKKKADWAIRWI----------GDKKAT---YGERVVAFAAVEGIFFSGSFASIFW 240 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL K +++ + ++ A L Sbjct: 241 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLIRKPSEERVKEIIMNAVL 293 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N +QY++F+A+R ++G ++K ENPF +M E I L+ Sbjct: 294 IEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFRKIYK-VENPFDFM-ENISLE 351 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 352 GKTNFFEKRVGEYQR 366 >gi|321476700|gb|EFX87660.1| hypothetical protein DAPPUDRAFT_306462 [Daphnia pulex] Length = 378 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 101/351 (28%), Positives = 163/351 (46%), Gaps = 32/351 (9%) Query: 4 NTGLSPIQAGEKRVNVDD----KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 N + + EK V V D + +L + L P++Y W+ Y A + W EV Sbjct: 35 NVSPTKLTTVEKSVQVRDNDQNEPLLRSNPSRFVLFPIQYHDIWQMYKKAEASFWTAEEV 94 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + DL W + L +ER + L FFA+S+ +V N+V + + PE R + Sbjct: 95 DLSKDLKDW---DNLQPNERHFVSHVLAFFAASDGIVNENLVERFAQEVQVPEARCFYGF 151 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTT 176 Q E +HS + +I + D E LFN +P I KA WA+++ Sbjct: 152 QIAMENIHSEMYSLLIETYIKDSAERTRLFNAVETMPCIAKKAEWAMKW----------I 201 Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236 G KDA + V + EG++F FA I L + M G+ + I RDE LH + Sbjct: 202 GNKDAP---YSERIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTD 258 Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296 F + HL K +++ +++ A +E + + +P +G+N QY+ Sbjct: 259 FACVMFK-------HLVNKPPKERIIEIINNAVKIEQEFLTDALPVEMIGMNCRLMRQYI 311 Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +F+A+R ++G L+ +ENPF +M E I L+ + NFFE +V EYQ+ Sbjct: 312 EFVADRLLLELGCTKLYN-SENPFDFM-EHISLEGKTNFFEKKVGEYQKAG 360 >gi|294950175|ref|XP_002786498.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] gi|239900790|gb|EER18294.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] Length = 350 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/317 (29%), Positives = 152/317 (47%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY WE Y + W E+ + DL W++ L+D++R I L FFA+S+ Sbjct: 27 MFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWEN---LSDNDRHFISHVLAFFAASD 83 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V N+ + PE R + Q E +HS T+ +I + D + ++F Sbjct: 84 GIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIKDPEQKDKIFRAIE 143 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VPS+ KA WAL + D F + L F V EG+ F F I Sbjct: 144 TVPSVRKKAEWALSWIND-------------DNCFAERLIAFACV-EGILFSGSFCAIYW 189 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + N +K +T+ ++ ++ A Sbjct: 190 LKKRGLMPGLTFSNELISRDEGLHADFACLLYNMLK------YTRLPDERVHEIVRGAVE 243 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E++P +G+N+ +Y++F+A+R +G L+ T NPF WM ++I L+ Sbjct: 244 VERVFISESLPVSLIGMNSQLMCRYIEFVADRLLVALGHPKLYNAT-NPFDWM-KMISLQ 301 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+G Sbjct: 302 GKTNFFEKRVGEYQKGG 318 >gi|332247268|ref|XP_003272775.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 1 [Nomascus leucogenys] Length = 434 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 159/331 (48%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 111 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 167 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 168 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 227 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + V + Sbjct: 228 YIKDPKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 274 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 275 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 327 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+ Sbjct: 328 KPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCILMKQYIEFVADRLMLELGFGKVFR 387 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 388 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 416 >gi|255551489|ref|XP_002516790.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] gi|223543878|gb|EEF45404.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] Length = 342 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/318 (28%), Positives = 149/318 (46%), Gaps = 31/318 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y A + W EV + D+ W++ L+ E+ I L FFA+S+ Sbjct: 32 MFPIRYKSLWEMYKKAEASFWTAEEVDLSQDVQQWET---LSVSEKHFISHVLAFFAASD 88 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS + ++ + D E LFN Sbjct: 89 GIVLENLAARFLNDIQVPEARAFYGFQIAMENIHSEMYSLLLETYIKDSREKNRLFNAIE 148 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA WAL + + S + V + EG++F F I Sbjct: 149 TIPCVARKAKWALDWIHSSS--------------LYAERLVAFACVEGIFFSGSFCAIFW 194 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ-QKSRTMLHEAT 269 L + M G+ + I RDE LH +F + + L K+ Q QK + ++HEA Sbjct: 195 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYS--------LLQKQLQWQKVQQIVHEAV 246 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E + + +P +G+N+ QY++F+A+R +G + + ENPF WM E I L Sbjct: 247 EIETEFVCDALPCALIGMNSTLMSQYIKFVADRLLVALGYQRKYN-VENPFDWM-EFISL 304 Query: 330 KKEKNFFETRVTEYQQGA 347 + + NFFE RV +YQ+ + Sbjct: 305 QGKANFFERRVGDYQKAS 322 >gi|56419447|ref|YP_146765.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus kaustophilus HTA426] gi|56379289|dbj|BAD75197.1| ribonucleoside-diphosphate reductase beta subunit [Geobacillus kaustophilus HTA426] Length = 346 Score = 140 bits (352), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 92/328 (28%), Positives = 161/328 (49%), Gaps = 19/328 (5%) Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ++N R S+V + Y WA+ KY N W P E+ M D+ K LTD E+ Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDV---KQFPQLTDREQDAF 78 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140 + +G A +S + + + ++++P ++ A +E +H+H++ Y+++SL Sbjct: 79 LKIIGLLALLDS-IQTDYAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E+F+ +R P++ + ++ + + ++ + E L VF V+ EG++ Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFV--------TNGYKAFAEEPNVENLLRSIVFDVILEGLF 189 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELADF 249 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENP 319 R +A LEI +A E + G++ E Y++F AN R HQ+G + P Y NP Sbjct: 250 VRNTFMKAAELEIEWAREIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309 Query: 320 FPWMS--EVIDLKKEKNFFETRVTEYQQ 345 W+ E +DL K +FFE + +Y + Sbjct: 310 LRWIKAYEEVDLGK-SDFFEQKPRQYTK 336 >gi|326437649|gb|EGD83219.1| ribonucleotide reductase M2 B [Salpingoeca sp. ATCC 50818] Length = 408 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/317 (28%), Positives = 155/317 (48%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP+++ W Y A + W EV + DL W+ GL D E+ IK L FFA+S+ Sbjct: 98 ILPIQHRQVWSMYKKAVASFWTAEEVDLSRDLDHWR---GLKDTEQHFIKHVLAFFAASD 154 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS + +I + D E LFN Sbjct: 155 GIVNENLVERFMCEVQLPEARCFYGFQIMIENIHSEMYSLLIDTYINDPQEKHMLFNAVE 214 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P++ KA WA+++ D + + V + EG++F FA I Sbjct: 215 TLPAVKRKAEWAMRWI-------------DHKRASFAERVVAFAAVEGIFFSGSFAAIFW 261 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + + I RDE LH +F + + + + P +++ ++ +A Sbjct: 262 LKKRGLMPGLTQSNELISRDEGLHCDFACLMFSMLHKKPP-------KERVIGIIMDAVE 314 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N+ +Y++F+++R +G + ++ T NPFP+M E I ++ Sbjct: 315 IEQEFLTEALPVSLLGMNSTLMREYIEFVSDRLLVSLGYDKVYNAT-NPFPFM-ENISIE 372 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV+EYQ+ Sbjct: 373 GKTNFFERRVSEYQKSG 389 >gi|242777635|ref|XP_002479074.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces stipitatus ATCC 10500] gi|218722693|gb|EED22111.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces stipitatus ATCC 10500] Length = 406 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 97/318 (30%), Positives = 153/318 (48%), Gaps = 29/318 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDER + R L FFA+S+ Sbjct: 85 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFVSRVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMY 149 +V N+V + PE R + Q E +HS T+ +I + ++E + LF+ Sbjct: 143 GIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTY-INEPKQRTYLFDAI 201 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 +P I KA+WAL++ D + F Q L F V EG++F FA I Sbjct: 202 DNIPCIRKKADWALRWIS------------DKESTFAQRLVAFAAV-EGIFFSGSFAAIF 248 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 L + M G+ + I RDE LH +F + + HL + + ++ +A Sbjct: 249 WLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPNPKVIEDIIVDAV 301 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E + + +P +G+N+ QY++F+A+R +G + + T NPF +M E I L Sbjct: 302 AIEQEFLTDALPCSLLGMNSKLMCQYIEFVADRLLVALGNKKYYNST-NPFDFM-ENISL 359 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 360 AGKTNFFEKRVGDYQKAG 377 >gi|149194868|ref|ZP_01871962.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2] gi|149135027|gb|EDM23509.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2] Length = 346 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 91/314 (28%), Positives = 151/314 (48%), Gaps = 11/314 (3%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 L Y WA+ + N W P EV + +D ++ L E+ M + L +S+ Sbjct: 35 LSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMYDKALSQLIFMDSIQ 91 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN + ++ PE L+RQAFEEA+HS ++ ++ S+ L+ E++ M+R ++ Sbjct: 92 TNNTPDHVNPWITAPEVNMCLVRQAFEEALHSQSYAVMVDSISLNTDEIYEMWRADENLR 151 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 K + + + + D E + V EG++FY GFA L RA K Sbjct: 152 KKNEFIGNVYEEWGIKAL-----NGDDEAKIYMIVANQALEGIYFYNGFAAFYVLARAGK 206 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 M+G A+ ++I RDE H ++ +IK E P L+T E + + ML+ A LE + Sbjct: 207 MLGSAQMIRFIQRDEVTHTLLFANIFKEIKKEFPDLFTPEVIRNIKDMLYAAYELERDWG 266 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWMSEVIDLKKEK- 333 +GL+ +++ +++AN+R H +GLE LF +NP W ++K Sbjct: 267 FYITNDEILGLSKELIDRFTKYLANKRAHAMGLELLFPEIGLKNPISWFDSFSSFNEQKT 326 Query: 334 NFFETRVTEYQQGA 347 NFFE V Y +G+ Sbjct: 327 NFFEGNVVNYSKGS 340 >gi|9634266|ref|NP_037805.1| ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera exigua MNPV] gi|6960505|gb|AAF33575.1|AF169823_45 ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera exigua MNPV] Length = 313 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 95/318 (29%), Positives = 157/318 (49%), Gaps = 32/318 (10%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W Y A + W EV + D + K LTD+ER I++ L FFA+++ Sbjct: 8 LFPIQHIDLWASYKQALDCMWKVEEVDLSKDYDDFTQK--LTDNERNFIEKILAFFAAAD 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V NI+ + R + E + + +Q + +H+ + +I +L DE + L N + Sbjct: 66 SIVNINIIEHMQRTVPELEAQYFYNQQVLIQCIHTEMYNLLIHALIKDEKKQEMLLNGFE 125 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA WA++Y D ++ L + V + + EG++F FA I Sbjct: 126 NMPCVRRKAEWAMKYI-------------DDEKITLAERLVAFAIVEGVFFSGSFAAIFY 172 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN---QIKIENPHLWTKEFQQKSRTMLHE 267 + M G+ + I RDE LH NF N K++ P + M E Sbjct: 173 MKTKGVMPGLTFSNELISRDEGLHTNFACLYYNTRVDQKLDAPTV---------NDMFSE 223 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A +E+ + E +P+ VG+NA +Y++F+A+R Q+ P YTENPF +M+ I Sbjct: 224 AVAIEMEFFAEALPESLVGMNANMMRKYIEFVADRLLVQLKY-PKMYYTENPFEFMNN-I 281 Query: 328 DLKKEKNFFETRVTEYQQ 345 L+ + NFFE RV EY++ Sbjct: 282 SLEGKTNFFEKRVGEYKR 299 >gi|298713498|emb|CBJ27053.1| Ribonucleoside-diphosphate reductase small chain [Ectocarpus siliculosus] Length = 504 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 93/323 (28%), Positives = 159/323 (49%), Gaps = 31/323 (9%) Query: 28 RSDVNQ--LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 R+D ++ L P+K+ W+ Y A + W EV + D W++ LT +E+ I Sbjct: 185 RADPSRFVLFPIKHPELWDMYKKAKASFWTVEEVDLSQDSRDWEA---LTGNEQHFISMV 241 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE- 144 L FFA+S+ +V N+V + + PE R + Q E++H + ++ + D+ E Sbjct: 242 LAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKDKQER 301 Query: 145 --LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 LFN Y ++P + KA+WA+++ + D F + L F V EG++F Sbjct: 302 DNLFNAYNDIPCVKQKADWAMRWIGS-------------DATFAERLVAFAAV-EGVFFS 347 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262 F I L + M G+ + I RDE LH +F + ++ K ++ Sbjct: 348 GSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACQLFASLE-------NKPSRETVM 400 Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 ++ EA +E ++ +P +G+NA QY++F+A+R +G + T+NPF W Sbjct: 401 AIVREAVEVEKSFICGALPCSLIGMNAGVMSQYIEFVADRLLGSLGYGKSYG-TQNPFDW 459 Query: 323 MSEVIDLKKEKNFFETRVTEYQQ 345 M ++I L+ + NFFE RV EYQ+ Sbjct: 460 M-DLISLQGKTNFFEKRVGEYQK 481 >gi|314055235|ref|YP_004063573.1| ribonucleoside-diphosphate reductase small subunit-possible host origin [Ostreococcus tauri virus 2] gi|313575126|emb|CBI70139.1| ribonucleoside-diphosphate reductase small subunit-possible host origin [Ostreococcus tauri virus 2] Length = 408 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PLKY WE Y A ++W EV + DL WK+ L ++E+ IK L FFA S+ Sbjct: 105 VFPLKYPQLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNENEKKFIKYILAFFAGSD 161 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V NI + E R + Q E VH T+ +I G ++ +LF + Sbjct: 162 GIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDGSEKKQLFEAIQ 221 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP I KA WA+++ T S + F + LF F V EG++F F I Sbjct: 222 TVPCIEKKAKWAMKWFDTKS------------RSFAERLFAFACV-EGIFFSGSFCAIYW 268 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH F +++ ++ + + ++ EA Sbjct: 269 LKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLR-------NRPTTETIHAIVKEAVE 321 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ +Y++++++R Q+G+ P++ +NPF +M E I L Sbjct: 322 IEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQVGVPPIWN-AKNPFDFM-ENISLD 379 Query: 331 KEKNFFETRVTEY 343 + NFFE RV +Y Sbjct: 380 GKTNFFEKRVGDY 392 >gi|91205547|ref|YP_537902.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia bellii RML369-C] gi|91069091|gb|ABE04813.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia bellii RML369-C] Length = 324 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 93/318 (29%), Positives = 156/318 (49%), Gaps = 26/318 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y + P ++ AF E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKP-TEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ Q+ + TT L VF EG+ + FA +L+ R Sbjct: 127 EMKDKYDYMQQFGVATNEDIATT------------LAVFGAFTEGLQLFASFAIMLNFPR 174 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLHEAT 269 NKM G+ + + +RDE+LH N I + ENP +WT+ + + T++H Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTENLRSRIYKACTTIVHFED 234 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 IA A E G GL A Y+++IA+RR Q+GL+ ++ NP PW+ E+++ Sbjct: 235 AF-IALAFEV--GGIEGLTADEVRLYIRYIADRRLFQLGLKDIYMVKNNPLPWLDEMLNG 291 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFE R TEY + A Sbjct: 292 VEHTNFFENRATEYSKAA 309 >gi|73979721|ref|XP_540076.2| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain (Ribonucleotide reductase small chain) isoform 1 [Canis familiaris] Length = 394 Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 95/315 (30%), Positives = 153/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W+S L +ER I L FFA+S+ Sbjct: 87 IFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 144 GIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIE 203 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL++ G K+A + V + EG++F FA I Sbjct: 204 TMPCVKKKADWALRWI----------GDKEAT---YGERVVAFAAVEGIFFSGSFASIFW 250 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL K +Q+ + ++ A Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPSEQRVKEIIINAVR 303 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ Sbjct: 304 IEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFR-VENPFDFM-ENISLE 361 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 362 GKTNFFEKRVGEYQR 376 >gi|297530897|ref|YP_003672172.1| ribonucleotide reductase [Geobacillus sp. C56-T3] gi|297254149|gb|ADI27595.1| ribonucleotide reductase [Geobacillus sp. C56-T3] Length = 346 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/328 (28%), Positives = 161/328 (49%), Gaps = 19/328 (5%) Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ++N R S+V + Y WA+ KY N W P E+ M D+ K LTD E+ Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDV---KQFPQLTDREQDAF 78 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140 + +G A +S + + + ++++P ++ A +E +H+H++ Y+++SL Sbjct: 79 LKIIGLLALLDS-IQTDYAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E+F+ +R P++ + ++ + + ++ + E L VF V+ EG++ Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFV--------TNGYKAFAEEPNVENLLRSIVFDVILEGLF 189 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENP 319 R +A LEI +A E + G++ E Y++F AN R HQ+G + P Y NP Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309 Query: 320 FPWMS--EVIDLKKEKNFFETRVTEYQQ 345 W+ E +DL K +FFE + +Y + Sbjct: 310 LRWIKAYEEVDLGK-SDFFEQKPRQYTK 336 >gi|194883840|ref|XP_001976005.1| GG22616 [Drosophila erecta] gi|190659192|gb|EDV56405.1| GG22616 [Drosophila erecta] Length = 393 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 154/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W + L DDER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D + LFN Sbjct: 143 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSVLIDTYIRDPNQREYLFNAIE 202 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P++ KA+WAL + +SS S G + + + EG++F FA I Sbjct: 203 TMPAVKRKADWALSW---ISSKSANFGER----------IIAFAAVEGIFFSGSFASIFW 249 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ ++ +A Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ-------HLVQRPKHERIIEIIRDAVA 302 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R ++G+ ++ T+NPF +M E+I L Sbjct: 303 IEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISLD 360 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 361 GKTNFFEKKVAEYQR 375 >gi|302843870|ref|XP_002953476.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f. nagariensis] gi|300261235|gb|EFJ45449.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f. nagariensis] Length = 400 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 93/332 (28%), Positives = 162/332 (48%), Gaps = 31/332 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D + +L+ D + P+KY WE Y A + W EV + DD+ W+ L+D ER Sbjct: 78 DPEPLLDENPDRFCMFPIKYPKIWEMYKKAEASFWTAEEVDLGDDMKHWEK---LSDGER 134 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL- 138 I L FFA+S+ +V N+ + + + PE R + Q E +HS + ++ + Sbjct: 135 HFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVAIENIHSEMYSLLLETYI 194 Query: 139 --GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 +++ +LF+ VP I KA WA+++ + SS F + L F V Sbjct: 195 KDPIEKHKLFHSIETVPCIKKKAQWAIKWIGSESS-------------FPERLVAFAAV- 240 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++F F I L + M G+ + I RDE LH +F + + +K+ Sbjct: 241 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYGML--------SKQ 292 Query: 257 FQQ-KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 ++ + + ++ EA +E + + +P +G+N+ QY++F+A+R +G + Sbjct: 293 LEESRIKEIICEAVDIENEFCTDALPVDLIGMNSRLMAQYIEFVADRLLVALGCSKAYNV 352 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 T NPF +M ++I L+ + NFFE RV +YQ+ Sbjct: 353 T-NPFDFM-DMISLQGKTNFFEKRVGDYQKSG 382 >gi|114799612|ref|YP_759103.1| ribonucleotide-diphosphate reductase subunit beta [Hyphomonas neptunium ATCC 15444] gi|114739786|gb|ABI77911.1| ribonucleoside-diphosphate reductase, beta subunit [Hyphomonas neptunium ATCC 15444] Length = 345 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 96/333 (28%), Positives = 163/333 (48%), Gaps = 26/333 (7%) Query: 24 MLNARSDVNQLL-------PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 M N +D LL P +Y WA+E + HWMP EVP+ +D W K L+D Sbjct: 1 MANVSTDRPGLLTPSNAYKPFRYPWAYEFWKKQQQVHWMPEEVPLGEDCKDWAVK--LSD 58 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYII 135 ER ++ + FF S+ V N + Y L P E L + E +H + ++ Sbjct: 59 AERNLLTQIFRFFTQSDVEVGAN-YMEHYMPLFKPVEVSMMLASFSNMETIHVAAYALLL 117 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 ++G+ + E F+ + E + AK ++ Q+ GT + +++ + VF Sbjct: 118 ETIGMPDSE-FSAFMEYKEMAAKHDYLGQF-----------GT-ETNEDIAVSMAVFGAF 164 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG+ + FA +++ R NKM G+ + + +RDESLH I + + E + T Sbjct: 165 TEGLQLFASFAMLMNFPRFNKMKGMGQIVTWSIRDESLHCEGMIKLFHSFCAET-GVMTD 223 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 E +++ R LE + G V G+ A + Y+++IA+ R +Q+ LEP++ Sbjct: 224 ELRERIRDCCRTVVALEDKFIELAFEMGPVEGMTADDIKNYIRYIADWRLNQLKLEPIYG 283 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 T++P PW++E+++ + NFFE R TEY +GA Sbjct: 284 VTKHPIPWLTEILNGVEHANFFEQRSTEYSKGA 316 >gi|119478853|ref|XP_001259462.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya fischeri NRRL 181] gi|119407616|gb|EAW17565.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya fischeri NRRL 181] Length = 405 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 150/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDER I L FFA+S+ Sbjct: 85 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 143 GIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIKEPKQRTYLFDAID 202 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ D + F Q L F V EG++F FA I Sbjct: 203 TIPCIAKKAQWAMRWIS------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFW 249 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ ++ EA Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNHRPDKKVVEDIIVEAVA 302 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N+ QY++F+A+R +G + + + NPF +M E I L Sbjct: 303 IEQEFLTEALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYYN-SSNPFDFM-ESISLA 360 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 361 GKTNFFEKRVGDYQKAG 377 >gi|157827263|ref|YP_001496327.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia bellii OSU 85-389] gi|157802567|gb|ABV79290.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia bellii OSU 85-389] Length = 324 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 93/318 (29%), Positives = 156/318 (49%), Gaps = 26/318 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ + Sbjct: 12 PFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y + P ++ AF E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKP-TEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ Q+ + TT L VF EG+ + FA +L+ R Sbjct: 127 EMKDKYDYMQQFGVATNEDIATT------------LAVFGAFTEGLQLFASFAIMLNFPR 174 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLHEAT 269 NKM G+ + + +RDE+LH N I + ENP +WT+ + + T++H Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTENLRSRIYKACTTIVHFED 234 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 IA A E G GL A Y+++IA+RR Q+GL+ ++ NP PW+ E+++ Sbjct: 235 AF-IALAFEV--GGIEGLTADEVRLYIRYIADRRLFQLGLKDIYMVKNNPLPWLDEMLNG 291 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFE R TEY + A Sbjct: 292 VEHTNFFENRATEYSKAA 309 >gi|294659365|ref|XP_461732.2| DEHA2G04268p [Debaryomyces hansenii CBS767] gi|199433907|emb|CAG90185.2| DEHA2G04268p [Debaryomyces hansenii] Length = 426 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 150/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + D W K L ++ER I R L FFA+S+ Sbjct: 114 LFPIKYHEIWQMYKKAEASFWTAEEIDLGKDTHDWNEK--LNNNERYFISRILAFFAASD 171 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + + Q E +HS T+ +I + D E LFN Sbjct: 172 GIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKEADFLFNAID 231 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WAL++ D D F + L F V EG++F FA I Sbjct: 232 NIPCIKKKADWALRWIN------------DDDALFGERLVAFAAV-EGIFFSGSFASIFW 278 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ EA Sbjct: 279 LKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLQNRPDAVIVERIITEAVT 331 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R +G + ++ T NPF +M E I L Sbjct: 332 IEKEFFVDALPISLLGMNCNLMCQYVEFVADRLLVALGNKKVYNVT-NPFDFM-ENISLA 389 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 390 GKTNFFEKRVSDYQKAG 406 >gi|149279601|ref|ZP_01885730.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter sp. BAL39] gi|149229637|gb|EDM35027.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter sp. BAL39] Length = 324 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 95/333 (28%), Positives = 156/333 (46%), Gaps = 30/333 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L D LLP+KY WE Y + + W E+ + DD W + L D ER Sbjct: 3 EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FF++S+ +V N+ + + PE R + Q E +HS T+ +I + Sbjct: 60 HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D E LF+ VP + KA WAL++ + F + L F V Sbjct: 120 KDPEEKDRLFHAIETVPCVKKKAEWALRWID--------------NGNFAERLVAFAAV- 164 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++F F I L + M G+ + I RDE H F + + +K K Sbjct: 165 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGSHCEFACLLYSMLK-------NKL 217 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++ ++ +A +E + + +P +G+NA QY++F+A+R ++G ++ T Sbjct: 218 SEEHVHGIIRDAVEIEKEFVTDALPVALIGMNAKLMSQYIEFVADRWLQELGYTKIYHAT 277 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E+I L+ + NFFE RV +YQ+ L Sbjct: 278 -NPFDFM-EMISLQGKTNFFEKRVGDYQKSGVL 308 >gi|138894466|ref|YP_001124919.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus thermodenitrificans NG80-2] gi|196247935|ref|ZP_03146637.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16] gi|134265979|gb|ABO66174.1| Ribonucleoside-diphosphate reductase beta subunit [Geobacillus thermodenitrificans NG80-2] gi|196212719|gb|EDY07476.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16] Length = 344 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/328 (27%), Positives = 157/328 (47%), Gaps = 19/328 (5%) Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+N R S+V + Y WA+ KY N W P E+ M D+ + D L I Sbjct: 20 MINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQFPQLTAREQDAFLKI 79 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140 L S ++ A + ++++P ++ A +E +H+H++ Y+++SL Sbjct: 80 IGLLALLDSIQTDYAGRVA----DYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 135 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E+F+ +R P++ + ++ + + + + E L VF V+ EG++ Sbjct: 136 KQDEVFDFWRNEPTLRKRNDFV--------TNGYKAFAEKPNVENLLRSIVFDVILEGLF 187 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E Sbjct: 188 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELADF 247 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENP 319 +R+ +A LEI +A E + G++ E Y++F AN R HQ+G + P Y NP Sbjct: 248 ARSTFMKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 307 Query: 320 FPWMS--EVIDLKKEKNFFETRVTEYQQ 345 W+ E +DL K +FFE + +Y + Sbjct: 308 LRWIKAYEEVDLGK-SDFFEQKPRQYTK 334 >gi|305665630|ref|YP_003861917.1| putative ribonucleoside-diphosphate reductase small chain [Maribacter sp. HTCC2170] gi|88710386|gb|EAR02618.1| probable ribonucleoside-diphosphate reductase small chain [Maribacter sp. HTCC2170] Length = 328 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/334 (27%), Positives = 161/334 (48%), Gaps = 32/334 (9%) Query: 24 MLNARSDVNQLLPLKYG--WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +L D + P+++ W W K AC W E+ + DL W +K L DDE+ Sbjct: 8 ILQENKDRFVIFPIQHHDLWEWYKKQEAC--IWTAEEIDLHQDLTDWNTK--LNDDEKYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E LF P+I KA+WAL++ + SPSF + + + EG Sbjct: 124 DKEKDILFKAIENFPAIKKKADWALKW---IESPSFA------------ERLIAFAAVEG 168 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H ++ + + H+ K + Sbjct: 169 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYA------VHLHKNHIVNKVTK 222 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ ++ +A +E + E++P +G+N+ QY++F+ +R ++ + ++ + N Sbjct: 223 ERITDIIVDALNIEREFITESLPVSLIGMNSKLMTQYLEFVTDRLLVELECDKVYN-SSN 281 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PF +M ++I L+ + NFFE RV+EYQ+ L D Sbjct: 282 PFDFM-DMISLQGKTNFFEKRVSEYQKAGVLNKD 314 >gi|224100309|ref|XP_002311826.1| predicted protein [Populus trichocarpa] gi|222851646|gb|EEE89193.1| predicted protein [Populus trichocarpa] Length = 342 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 98/338 (28%), Positives = 160/338 (47%), Gaps = 31/338 (9%) Query: 15 KRVNVDDKR--MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +R+ +DK+ +L ++ + P++Y WE Y A + W EV + D+ W++ Sbjct: 11 ERIREEDKQEPILKEQNQRFCMFPIRYKELWEMYKKAEASFWTAEEVDLSRDMQQWEA-- 68 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+D E+ I L FFA+S+ +V N+ + PE R + Q E +HS + Sbjct: 69 -LSDSEKHFISHVLAFFAASDGIVLENLAARFLYDVQIPEARAFYGFQIAMENIHSEMYS 127 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 ++ + D E LFN +P + KA WAL + Q SS F + Sbjct: 128 LLLETYIKDSREKHRLFNAIENIPCVAEKAKWALDWIQ--SSMVFA------------ER 173 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 V + EG++F F I L + M G+ + I RDE LH +F + + ++ Sbjct: 174 LVAFACIEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQ-RQ 232 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 H W QK ++ EA +E + E +P +G+NA Y++F+A+R +G Sbjct: 233 LH-W-----QKVYHIVGEAVEIETKFVCEALPCALIGMNATLMGDYIKFVADRLLVALGY 286 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 + + ENPF WM E I L+ + NFFE RV +YQ+ + Sbjct: 287 QKKYN-VENPFDWM-EFISLQGKANFFERRVGDYQKAS 322 >gi|167462363|ref|ZP_02327452.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus larvae subsp. larvae BRL-230010] Length = 343 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 87/312 (27%), Positives = 165/312 (52%), Gaps = 19/312 (6%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ WA+ Y + N W+P EVPM D+ W ++ L D ER K+ +G A +S V Sbjct: 33 RFPWAYPMYRNMLRNFWIPDEVPMTADIKQWSTE--LGDHERDTFKKVIGLLAFLDS-VQ 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSI 155 + + +L++ + +F+E VH+ ++ Y+++SL ++ E+F ++ + Sbjct: 90 TDYSGKVADYLTDSSLSALMSVLSFQEVVHNQSYSYVLSSLVPKSEQDEIFEYWKTDEVL 149 Query: 156 TAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + ++ A Y + + P+ Q F++ + V+ V+ EG++FY+GFA ++ R Sbjct: 150 RERNDFLAAGYQRFVDDPT--------PQTFMESV-VYDVILEGLFFYSGFAFFYNMARN 200 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM+G ++I RDE +H+ + ++ ENP L +E + R +A LEIA Sbjct: 201 GKMLGTNTMIRFINRDEEIHVRLFTQIFRELIAENPELDNEETHEFVRQTFRKAAELEIA 260 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMS--EVIDLKK 331 ++ + F G+ + ++Y++F+AN+R +++G+E P + N W+ E D K Sbjct: 261 WSEYIIGDRFDGVTSRDLDKYVRFMANKRVNELGIERPFEGHRRNNLRWIKAYEENDAGK 320 Query: 332 EKNFFETRVTEY 343 +FFE+RVT+Y Sbjct: 321 -TDFFESRVTQY 331 >gi|241951880|ref|XP_002418662.1| ribonucleoside diphosphate reductase, putative [Candida dubliniensis CD36] gi|223642001|emb|CAX43965.1| ribonucleoside diphosphate reductase, putative [Candida dubliniensis CD36] Length = 394 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 95/318 (29%), Positives = 154/318 (48%), Gaps = 29/318 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y + + W E+ + DLA W N + ++ER I R L FFA+S+ Sbjct: 83 IYPIKYPELWQFYKKSLASFWTAEELDLSKDLADWN--NKMNENERFFISRVLAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + Q E +HS T+ +I + D E LFN Sbjct: 141 GIVNENLVENFCAEVQIPEAQSVYKFQIMMENIHSETYSLLIETYFKDPEEADFLFNAIE 200 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D D + + L F V EG++F FA I Sbjct: 201 NIPFIREKADWAIRWIQ------------DEDALYAERLVAFAAV-EGIFFSGSFAAIFW 247 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTKEFQQKSRTMLHEAT 269 L + M G+ + I RDE +H ++ + + +K + +P + K ++ EA Sbjct: 248 LKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLKNKPSPEIIEK--------IITEAV 299 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E Y + +P +G+N QY++F+A+R G + + T NPF +M E I L Sbjct: 300 TIEKKYFSDALPVSLLGMNCDLMCQYVEFVADRLLVAFGNKKYYNVT-NPFDFM-ENISL 357 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 358 AGKTNFFEKRVSDYQKAG 375 >gi|7672989|gb|AAF66689.1|AF144620_1 ribonucleotide reductase small subunit [shrimp white spot syndrome virus] Length = 413 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 94/335 (28%), Positives = 161/335 (48%), Gaps = 30/335 (8%) Query: 17 VNVDDKRMLNARSDVNQLL--PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + VD + L R + N+ + P+ + WE Y W E+ + D W+ L Sbjct: 50 MQVDTFKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---L 106 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + + Sbjct: 107 TQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGEL 166 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I L DE + LFN + P+I K WA+ + Q+ + L +L V Sbjct: 167 IDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIV 212 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I + + G+ ++I RDE LH +F ++ + ++ P Sbjct: 213 AFAAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTPS 272 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 +++ ++ EA +E + ++P VG+N QY++F+A++ ++GLE Sbjct: 273 ------RERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEK 326 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 + T NPFP+M I L+ + NFFE RV EYQ+ Sbjct: 327 HYNVT-NPFPFMDN-ISLENKTNFFEKRVAEYQRA 359 >gi|39977011|ref|XP_369893.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15] gi|145016179|gb|EDK00669.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15] Length = 403 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 96/310 (30%), Positives = 152/310 (49%), Gaps = 27/310 (8%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+ Y A + W E+ + DL W +K LTDDE+ I L FFA+S+ +V N+ Sbjct: 84 FVWQMYKKAEASFWTAEEIDLSKDLHDWNNK--LTDDEKYFISHILAFFAASDGIVNENL 141 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157 V + PE R + Q E +HS T+ +I + + + LFN +P I Sbjct: 142 VERFSAEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIKETAQRTYLFNAIDTIPCIRK 201 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA+WAL++ D F L F VV EG++F FA I L + M Sbjct: 202 KADWALRWIT------------DKKSTFATRLIAFAVV-EGIFFSGAFASIFWLKKRGLM 248 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + + P+ ++ + ++ +A +E + Sbjct: 249 PGLTFSNELISRDEGLHTDFACLLFSLLN-NRPN------KEVVKEIVVDAVKIEQEFLT 301 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 E +P +G+NA +QY++F+A+R +G E +++ T NPF +M E I L + NFFE Sbjct: 302 EALPCALLGMNANLMKQYIEFVADRLLVALGNEKVYRAT-NPFDFM-ENISLGGKTNFFE 359 Query: 338 TRVTEYQQGA 347 RV EYQ+ Sbjct: 360 KRVGEYQKAG 369 >gi|195333568|ref|XP_002033462.1| GM20395 [Drosophila sechellia] gi|195582581|ref|XP_002081105.1| GD25870 [Drosophila simulans] gi|194125432|gb|EDW47475.1| GM20395 [Drosophila sechellia] gi|194193114|gb|EDX06690.1| GD25870 [Drosophila simulans] Length = 393 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 155/315 (49%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W + L DDER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D + LFN Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIE 202 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P++ KA+WAL + +SS S G + + + EG++F FA I Sbjct: 203 TMPAVKRKADWALSW---ISSKSANFGER----------IIAFAAVEGIFFSGSFASIFW 249 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +++ ++ +A Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ-------HLVQRPKRERIIEIIRDAVA 302 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R ++G+ ++ T+NPF +M E+I L Sbjct: 303 IEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISLD 360 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 361 GKTNFFEKKVAEYQR 375 >gi|110636874|ref|YP_677081.1| ribonucleoside-diphosphate reductase 1 subunit beta [Cytophaga hutchinsonii ATCC 33406] gi|110279555|gb|ABG57741.1| ribonucleoside-diphosphate reductase 1, beta subunit [Cytophaga hutchinsonii ATCC 33406] Length = 324 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 154/317 (48%), Gaps = 29/317 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K+ W Y + W E+ + DL W + L D ER I L FFA+S+ Sbjct: 18 LFPIKHDDIWAMYKQEEASFWTAEEIDLSQDLIDWAN---LNDGERHFISHVLAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + PE + + Q E +HS T+ +I + D E LFN Sbjct: 75 GIVNENLAVNFLEKVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIKDPKEKDRLFNAID 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP + KA+WAL++ S F++++ F V EG++F F + Sbjct: 135 TVPCVKKKADWALRFIDNGS--------------FIENIIAFAAV-EGIFFSGSFCSVFW 179 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G++ + I RDE LH +F + + ++ K ++ ++ EA Sbjct: 180 LKKRGLMPGLSFSNELISRDEGLHCDFACLLYTK------YINNKLPAERVIQIILEAVE 233 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +++P +G+NA +QY++F+A+R +G+ F T NPF +M E+I L+ Sbjct: 234 IEKEFVTDSLPVDLIGMNARLMQQYIEFVADRLLVALGVPKQFNAT-NPFDFM-EMISLQ 291 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV+EYQ+ Sbjct: 292 GKTNFFEKRVSEYQKSG 308 >gi|46446983|ref|YP_008348.1| ribonucleoside-diphosphate reductase small chain [Candidatus Protochlamydia amoebophila UWE25] gi|46400624|emb|CAF24073.1| probable ribonucleoside-diphosphate reductase small chain [Candidatus Protochlamydia amoebophila UWE25] Length = 323 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 91/327 (27%), Positives = 156/327 (47%), Gaps = 29/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L P+ + W+ Y A + W E+ + DL W K L +DE+ IK Sbjct: 7 ILRENKDRFVLFPINHAEIWQMYKKAEASFWTAEEIDLTSDLLDWDRK--LNNDEKYFIK 64 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140 L FFA+S+ +V N+ + + PE R + Q E +HS + +I + Sbjct: 65 HILAFFAASDGIVNENLAVNFMSEVQYPEARCFYGFQIMMENIHSEAYSLLIDTYIKDPT 124 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 D+ LF +P I+ KA+WAL++ +S SF+ + V + EG++ Sbjct: 125 DKNRLFKALETIPCISNKADWALRW---ISQGSFS------------ERLVAFAAVEGIF 169 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G++ + I RDE LH +F + +Q+ + P + Sbjct: 170 FSGSFCSIFWLKKRGLMPGLSFANELISRDEGLHCDFACLLYSQLNNKLP-------LET 222 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + ++ A +E + + +P +G+NA QY++F+A+R +G L+ +NPF Sbjct: 223 LQAIISHAVAIEKEFVQDALPVRLIGMNATLMCQYIEFVADRLLVALGSPKLYN-VDNPF 281 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M ++I + + NFFE RV+EYQ+ Sbjct: 282 DFM-DLISMPGKTNFFERRVSEYQKSG 307 >gi|17551968|ref|NP_497821.1| RiboNucleotide Reductase family member (rnr-2) [Caenorhabditis elegans] gi|1172941|sp|P42170|RIR2_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|3873950|emb|CAA84688.1| C. elegans protein C03C10.3, confirmed by transcript evidence [Caenorhabditis elegans] Length = 381 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 99/328 (30%), Positives = 157/328 (47%), Gaps = 28/328 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ ML + + PLK+ W Y A + W EV + D+ W+ NG DE+ Sbjct: 61 DEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQY 117 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+ + E R + Q E +HS + +I + Sbjct: 118 FISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLIETYIR 177 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 DE E LFN E I KA+WAL++ D F + L F V E Sbjct: 178 DETERNTLFNAVDEFEFIKKKADWALRWIS------------DKKASFAERLIAFAAV-E 224 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + ++++ K Sbjct: 225 GIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYSKLQ-------KKLT 277 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 QQ+ ++ +A +E + E +P +G+N QY++F+A+ ++G + L+K ++ Sbjct: 278 QQRIYDIIKDAVAIEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLVELGCDKLYK-SK 336 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 NPF +M E I + + NFFE RV+EYQ+ Sbjct: 337 NPFDFM-ENISIDGKTNFFEKRVSEYQR 363 >gi|302696699|ref|XP_003038028.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8] gi|300111725|gb|EFJ03126.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8] Length = 377 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 95/333 (28%), Positives = 156/333 (46%), Gaps = 27/333 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + +D+ +L L P++Y W Y A + W E+ + D+ W + L D Sbjct: 57 IRAEDEPLLRESQRRFVLFPIQYDDIWAMYKQAQASFWTSEEITLAYDMRDWTER--LDD 114 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +ER IK L FFA+S+ +V N+V + E R + Q E +HS T+ +I Sbjct: 115 NERNFIKHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMMENIHSETYSLLID 174 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + D E LF +P I KA+WAL++ D F + L F Sbjct: 175 TYIKDPQERDHLFAAIETIPCIKRKADWALRW------------ISDKSSTFAERLVAFA 222 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 V EG++F FA I L + M G+ + I RDE +H F + + ++ PH Sbjct: 223 AV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTEFACLLFSHLR-HRPH-- 278 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + ++ EA +E + + +P +G+NA QY++F+A+R + +G ++ Sbjct: 279 ----PSVVQRIVKEAVAIEHEFLSDALPVSLIGMNAALMRQYIEFVADRLLYSLGQNKIY 334 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 T NPF +M ++I L+ + NFFE RV+EY + Sbjct: 335 NAT-NPFDFM-DMISLQGKTNFFEKRVSEYAKA 365 >gi|266918|sp|P07201|RIR2_SPISO RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit; AltName: Full=p41 gi|10342|emb|CAA38919.1| M2 (small) subunit of ribonucleotide reductase [Spisula solidissima] Length = 384 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 94/315 (29%), Positives = 152/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP++Y W+ Y A + W EV + D+A W+S L +E+ I L FFA+S+ Sbjct: 74 VLPIQYHDIWKMYKKAEASFWTAEEVDLSKDMAHWES---LKKEEKHFISHVLAFFAASD 130 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 131 GIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIE 190 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA+++ SS + V + EG++F FA I Sbjct: 191 TMPCVKEKADWAMRWINDDSSS-------------YAERVVAFAAVEGIFFSGSFASIFW 237 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL K Q++ ++ EA Sbjct: 238 LKKRGIMPGLTFSNELISRDEGLHCDFACLMFS-------HLVNKPSQERIHQIIDEAVK 290 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N QY++F+A+R ++ + L+ ENPF +M E I L+ Sbjct: 291 IEQVFLTEALPCRLIGMNCDLMRQYIEFVADRLLLELKCDKLYN-KENPFDFM-EHISLE 348 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 349 GKTNFFEKRVGEYQK 363 >gi|224048725|ref|XP_002196356.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Taeniopygia guttata] Length = 390 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 100/354 (28%), Positives = 166/354 (46%), Gaps = 34/354 (9%) Query: 1 MANNTGLSPIQAGE------KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54 +A+ T Q G+ +R +++ +L + P++Y W+ Y A + W Sbjct: 44 LASKTARRIFQEGDGNSVSVERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFW 103 Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 EV + DL W+S L +E+ I L FFA+S+ +V N+V + + E R Sbjct: 104 TAEEVDLSKDLQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 160 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 + Q E +HS + +I + D E LFN +P + KA+WA+ + Sbjct: 161 CFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWAMCWI----- 215 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 G K A + V + EG++F FA I L + M G+ + I RDE Sbjct: 216 -----GDKKAT---YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 267 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 LH +F + HL K +++ + ++ A L+E + E +P +G+N Sbjct: 268 GLHCDFACLMFK-------HLIHKPSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTL 320 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +QY++F+A+R ++G ++K ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 321 MKQYIEFVADRLMLELGFNKIYK-AENPFDFM-ENISLEGKTNFFEKRVGEYQR 372 >gi|58578998|ref|YP_197210.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia ruminantium str. Welgevonden] gi|58417624|emb|CAI26828.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia ruminantium str. Welgevonden] Length = 329 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 162/319 (50%), Gaps = 25/319 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++ + Sbjct: 17 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKT--VLSDKEKNLLVQIFRFFTQAD-I 73 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y ++ P ++ AF E +H + Y++ ++G+ E E + + + Sbjct: 74 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 131 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ ++ + K+ + + L VF EG+ + FA +L+ R Sbjct: 132 VMKKKYDYMQRFEEC---------RKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 182 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + + +RDE+LH I + N EN +W + +++ L+EA + + Sbjct: 183 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDDLKKE----LYEACSVIV 238 Query: 274 AYAHETMPKGFV-----GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 E + F GL+A ++Y+++IANRR Q+ LEP++ +NP W+ E+++ Sbjct: 239 TLEDEFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILN 298 Query: 329 LKKEKNFFETRVTEYQQGA 347 + NFFE RVTEY + A Sbjct: 299 GVEHTNFFENRVTEYTRAA 317 >gi|52077136|dbj|BAD46182.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group] gi|52077275|dbj|BAD46317.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group] gi|186920364|gb|ACC95435.1| ribonucleotide diphosphate reductase small subunit 1 [Oryza sativa Japonica Group] Length = 339 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 90/327 (27%), Positives = 154/327 (47%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L S+ + P++Y WE Y A + W EV + D W + L+ DER I Sbjct: 17 LLAESSERFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFIS 74 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140 L FFA+S+ +V N+ + E R + Q E +HS + ++ + G Sbjct: 75 HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGA 134 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 ++ LF VP++ KA+WA+++ D + F + L F V EG++ Sbjct: 135 EKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 180 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ K + + Sbjct: 181 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLR-------GKLDEAR 233 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R ++ +A +E + + +P VG+N QY++F+A+R +G + ++ NPF Sbjct: 234 VREIVADAVDIEREFVCDALPVALVGMNGDLMSQYIEFVADRLLMALGCKKMYN-VANPF 292 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV +YQ+ + Sbjct: 293 DWM-ELISLQGKTNFFEKRVGDYQKAS 318 >gi|57239055|ref|YP_180191.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia ruminantium str. Welgevonden] gi|15811135|gb|AAL08816.1|AF308664_1 hypothetical ribonucleoside reductase beta chain [Ehrlichia ruminantium] gi|57161134|emb|CAH58047.1| putative ribonucleoside-diphosphate reductase beta chain [Ehrlichia ruminantium str. Welgevonden] Length = 324 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 91/319 (28%), Positives = 161/319 (50%), Gaps = 25/319 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKT--VLSDKEKNLLVQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y ++ P ++ AF E +H + Y++ ++G+ E E + + + Sbjct: 69 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K + Y Q F K+ + + L VF EG+ + FA +L+ R Sbjct: 127 VMKKKYD----YMQ-----RFEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + + +RDE+LH I + N EN +W + +++ L+EA + + Sbjct: 178 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDDLKKE----LYEACSVIV 233 Query: 274 AYAHETMPKGFV-----GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 E + F GL+A ++Y+++IANRR Q+ LEP++ +NP W+ E+++ Sbjct: 234 TLEDEFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILN 293 Query: 329 LKKEKNFFETRVTEYQQGA 347 + NFFE RVTEY + A Sbjct: 294 GVEHTNFFENRVTEYTRAA 312 >gi|156387375|ref|XP_001634179.1| predicted protein [Nematostella vectensis] gi|156221259|gb|EDO42116.1| predicted protein [Nematostella vectensis] Length = 384 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 96/338 (28%), Positives = 158/338 (46%), Gaps = 28/338 (8%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + R N +D+ +L +LP++Y W+ Y A + W EV + D + Sbjct: 56 AKSRFNTEDEPLLRENPHRFVILPIQYTEIWQMYKKAEASFWTAEEVDLSKDSHDFAK-- 113 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L D ER+ + L FFA+S+ +V N+V + + PE R + Q E +HS + Sbjct: 114 -LNDHERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEMYS 172 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 +I SL D+ E LFN +P + KA+WAL + + F + + Sbjct: 173 LLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWINPQRA------------SFGERI 220 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 F V EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 221 IAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC-------LMY 272 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 +L K ++ R ++ +A ++E + +P +G+N QY++F+A+R + Sbjct: 273 KYLVNKPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVALNC 332 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 + ++ ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 333 QKVYN-AENPFDFM-ENISLEGKTNFFEKRVGEYQKSG 368 >gi|9633826|ref|NP_051904.1| gp015L [Rabbit fibroma virus] gi|6578545|gb|AAF17899.1|AF170722_17 gp015L [Rabbit fibroma virus] Length = 322 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 96/330 (29%), Positives = 158/330 (47%), Gaps = 28/330 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++D+ +L D + P++Y W+ Y A + W P EV + DL W + LT DE Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWKMYKKAVASFWTPEEVDISKDLKDW---HILTSDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAIENIHSEMYSLLIDTY 117 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 +D E LF + I KA W ++ ++ D + + L F V Sbjct: 118 IIDIQEKEKLFKAIETMDCIKQKAEWVQKW------------IRNKDATYAERLIAFASV 165 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + KM G+ + I RDE LH +F + HL Sbjct: 166 -EGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFK-------HLNHT 217 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + ++ ++ EA ++E + + +P +G+N QY++F+A+R ++G +F Sbjct: 218 PSETRATDIIKEAVVIEQQFLTKALPVRLIGINCDLMCQYIEFVADRLVTELGYSKIFSA 277 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 T NPF +M E I L+ + NFFE RV++YQ+ Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQR 305 >gi|257456224|ref|ZP_05621421.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema vincentii ATCC 35580] gi|257446310|gb|EEV21356.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema vincentii ATCC 35580] Length = 351 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 97/341 (28%), Positives = 168/341 (49%), Gaps = 15/341 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + V ++M+ + ++N +KY WA E Y A NN W+P E+ M D+ ++ L+ Sbjct: 20 IEVHLRKMIGGNTTNLNDFNNMKYAWASEWYRQAMNNFWIPEEINMNADVQDYRK---LS 76 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + L F +S+ N+ + ++++ E L QAF+EAVHS ++ Y++ Sbjct: 77 PAEKTAYDKILSFLIFLDSIQTANLP-NVGQYITANEVNLCLTIQAFQEAVHSQSYSYML 135 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 ++ + +Y+ K + L + D L + V + Sbjct: 136 DTICSPDERTAILYQ------WKDDEHLLKRNKFIGDLYNEFQDDKSALALLKVAVANYI 189 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GF +LGR NKM G ++ +YI RDE+ HL +I++++ E P L+T Sbjct: 190 LEGVYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIHELQKEEPQLFTP 249 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK- 314 E + R+M+ E EIA+ H + GL Y+Q++ N RC +G EPL++ Sbjct: 250 ENNELFRSMIREGCEQEIAWGHYVIGDDIPGLTRGMVTDYIQYLGNLRCENLGFEPLYEG 309 Query: 315 YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 + E P W+S+ + K +FFE + T Y + + LK D Sbjct: 310 HREEPASMSWVSQYSNANLIKTDFFEAKSTAYAKSSALKDD 350 >gi|89268988|emb|CAJ81953.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana) tropicalis] gi|89269815|emb|CAJ81580.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana) tropicalis] Length = 386 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 97/334 (29%), Positives = 159/334 (47%), Gaps = 28/334 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + D+ +L + P++Y W+ Y A + W EV + DL W+S L Sbjct: 60 KDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES---L 116 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +E+ I L FFA+S+ +V N+V + + E R + Q E +HS + + Sbjct: 117 KAEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 176 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + D E LFN +P + KA+WAL++ +S T G + V Sbjct: 177 IDTYIKDPKEREYLFNAIETLPCVKKKADWALRW---ISDKQATYGER----------VV 223 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I L + M G+ + I RDE LH +F + H Sbjct: 224 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------H 276 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L K +++ ++ +A +E + E +P +G+N +QY++F+A+R ++G Sbjct: 277 LVNKPSEERVVQLITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLLLELGFNK 336 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +FK T NPF +M E I L+ + NFFE +V EYQ+ Sbjct: 337 VFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQK 368 >gi|257067181|ref|YP_003153437.1| ribonucleotide-diphosphate reductase subunit beta [Anaerococcus prevotii DSM 20548] gi|256799061|gb|ACV29716.1| Ribonucleoside-diphosphate reductase [Anaerococcus prevotii DSM 20548] Length = 352 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 97/344 (28%), Positives = 173/344 (50%), Gaps = 21/344 (6%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +++ +R++ + ++N LKY W + Y A NN W+P E+ + D+ ++ L Sbjct: 21 IDLSKRRIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDYRK---LD 77 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ R L F +S+ N+ + +++ E L Q ++E++HS ++ YI+ Sbjct: 78 KHEKKAFDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHSQSYSYIL 136 Query: 136 TSLGLDE--GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 ++ E + +++E + + + QY + L + D + F++ L Sbjct: 137 DTICSPEERTRILYLWKEDEHLLKRNEFIGDQYNEFLEN--------DDEFRFMKVLIAN 188 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 Y++ EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL +IN +K E L Sbjct: 189 YIL-EGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKEREDL 247 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 + E Q R ML E EIA+ ++ GLN E Y++++ N R +GLEPL Sbjct: 248 FVPELQNYYREMLKEGVEQEIAWGKYSIGNSIAGLNEKMIEDYIKYLGNLRAKGLGLEPL 307 Query: 313 FK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 ++ Y E P W+ E D K +FFE +VT Y + + ++ D Sbjct: 308 YEGYKEIPESMKWVDEYSDPNGVKTDFFEAKVTAYSKSSIIEDD 351 >gi|225451453|ref|XP_002269951.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147804660|emb|CAN64484.1| hypothetical protein VITISV_012640 [Vitis vinifera] Length = 329 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 91/333 (27%), Positives = 159/333 (47%), Gaps = 29/333 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ ++ +L D + P++Y WE Y A + W EV + D W++ LT D Sbjct: 3 SIPEEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWEN---LTSD 59 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+ + + E R + Q E +HS + ++ S Sbjct: 60 EKHFISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLES 119 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LF+ +P + KA WAL++ D + F + L F Sbjct: 120 YIKDPKEKNRLFHAIDTIPCVAKKAQWALRWI-------------DGSETFAERLLAFAC 166 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 V EG++F F I L + M G+ + I RDE LH +F + + ++ Sbjct: 167 V-EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------N 218 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ + ++ ++ +E + + +P VG+N+ QY++F+A+R +G ++ Sbjct: 219 KLSEERVKAIVADSVDIEREFVCDALPCALVGMNSALMSQYIEFVADRLLGALGYGKMYN 278 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 + NPF WM E+I L+ + NFFE RV EYQ+ + Sbjct: 279 VS-NPFDWM-ELISLQGKTNFFEKRVGEYQKAS 309 >gi|322378346|ref|ZP_08052803.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS1] gi|322379688|ref|ZP_08054002.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS5] gi|321147887|gb|EFX42473.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS5] gi|321149232|gb|EFX43675.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS1] Length = 342 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 91/334 (27%), Positives = 168/334 (50%), Gaps = 20/334 (5%) Query: 19 VDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG---L 74 V D+++ + + L +KY WA + + + N W P EV M D KN L Sbjct: 18 VSDRQIFGGNPTSMFDLNKIKYPWASKLWKTMLTNTWFPEEVSMHGD------KNHYLHL 71 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E++ R L +SL NN++ I +++PE L+RQA+EEA+HSH++ + Sbjct: 72 SPQEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEEALHSHSYAVM 131 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + S+ + ++ M+R ++ K + Q LS+ + L+ LF + Sbjct: 132 VESISANSDSIYEMWRTDVALKNKNDCIAQIYMELSN-------NPTEYNLLKALFANQI 184 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY+GF+ +L R+ +M+G A+ ++I RDE HL+ ++IN ++ E L++ Sbjct: 185 L-EGIYFYSGFSFFYALARSGRMLGSAQMIRFIQRDELTHLHLFQNMINTLRKERSDLFS 243 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 E + M +A LE A+ + L+ Y +++A+ R +GL L+ Sbjct: 244 PELIAEVNEMFKQAVDLESAWGAYITQGEMLDLSPQILRTYTEYLADTRLAVVGLPKLYN 303 Query: 315 YTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 ++NP W+ + + + NFFE +V+ Y +G+ Sbjct: 304 -SQNPIKWVDQFANFNSHRSNFFEAKVSNYSKGS 336 >gi|221120499|ref|XP_002159812.1| PREDICTED: similar to hCG23833 [Hydra magnipapillata] Length = 387 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 89/317 (28%), Positives = 153/317 (48%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W EV + D W+ K L E+ I L FFA+S+ Sbjct: 72 LFPIQYKDIWKMYKQAEASFWTVEEVDLAADAVHWEEK--LKPQEKYFISHVLAFFAASD 129 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V N+V + + PE R + Q E +HS + +I +L +++ LFN Sbjct: 130 GIVNENLVECFSQEVQLPEARAFYGFQIAIENIHSEMYSLLIDTLIKDPIEKSNLFNAIE 189 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA WAL++ + D + V + EG++F FA I Sbjct: 190 TMPCVQKKAVWALKWI-------------NKDCASFSERVVAFAAVEGIFFSGSFAAIFW 236 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + N + G+ + I RDE LH +F + H+ K +++ + ++ +A Sbjct: 237 LKKRNLLPGVTFSNELISRDEGLHCDFAC-------LMYKHIVNKPSEERVKQIIRDAVA 289 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +EI + E++P +G+N + Y++F A+R + +G + ENPF +M E I L Sbjct: 290 IEIEFLTESLPCDLLGMNKSLMKTYIEFCADRLINALGYSKEWN-VENPFDFM-ENISLA 347 Query: 331 KEKNFFETRVTEYQQGA 347 ++ NFFE+RV++YQ+ Sbjct: 348 RKANFFESRVSDYQKAG 364 >gi|195401438|ref|XP_002059320.1| GJ18335 [Drosophila virilis] gi|194142326|gb|EDW58732.1| GJ18335 [Drosophila virilis] Length = 394 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 155/315 (49%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W LTD+ER I L FFA+S+ Sbjct: 87 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWAR---LTDNERHFISHVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D + LFN Sbjct: 144 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQRDYLFNAIE 203 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P++ KA+WAL + +SS + G + + + EG++F FA I Sbjct: 204 TMPAVKRKADWALSW---ISSKAANFGER----------IIAFAAVEGIFFSGSFASIFW 250 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +++ ++ +A Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ-------HLVQRPCRERIIEIISDAVT 303 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N +Y++F+A+R ++G+ L+ T+NPF +M E+I L Sbjct: 304 IEQEFLTDALPVNLIGMNCALMSEYIEFVADRLLVELGVGKLYN-TKNPFTFM-EMISLD 361 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 362 GKTNFFEKKVGEYQR 376 >gi|18079279|ref|NP_525111.1| ribonucleoside diphosphate reductase small subunit [Drosophila melanogaster] gi|12644287|sp|P48592|RIR2_DROME RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small subunit gi|10727628|gb|AAF58599.2| ribonucleoside diphosphate reductase small subunit [Drosophila melanogaster] gi|15292183|gb|AAK93360.1| LD41588p [Drosophila melanogaster] gi|220946286|gb|ACL85686.1| CG8975-PA [synthetic construct] gi|220955972|gb|ACL90529.1| RnrS-PA [synthetic construct] Length = 393 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 155/315 (49%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W + L DDER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D + LFN Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIE 202 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P++ KA+WAL + +SS S G + + + EG++F FA I Sbjct: 203 TMPAVKRKADWALSW---ISSKSANFGER----------IIAFAAVEGIFFSGSFASIFW 249 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +++ ++ +A Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ-------HLVQRPKRERIIEIIRDAVA 302 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R ++G+ ++ T+NPF +M E+I L Sbjct: 303 IEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISLD 360 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 361 GKTNFFEKKVGEYQR 375 >gi|148676854|gb|EDL08801.1| ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus] Length = 297 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 148/305 (48%), Gaps = 28/305 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V Sbjct: 2 YKQAQASFWTAEEVDLSKDLPHW---NKLKSDEKYFISHILAFFAASDGIVNENLVERFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + PE R + Q E VHS + +I + D + LFN +P + KA+WA Sbjct: 59 QEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWA 118 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L++ S T G + V + EG++F FA I L + M G+ Sbjct: 119 LRWIADRKS---TFGER----------VVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTF 165 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I RDE LH +F + +L K + + R ++ +A +E + E +P Sbjct: 166 SNELISRDEGLHCDFACLMFQ-------YLVNKPSEDRVREIIADAVQIEQEFLTEALPV 218 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 G +G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV+E Sbjct: 219 GLIGMNCVLMKQYIEFVADRLLGELGFSKIFQ-AENPFDFM-ENISLEGKTNFFEKRVSE 276 Query: 343 YQQGA 347 YQ+ A Sbjct: 277 YQRFA 281 >gi|294890631|ref|XP_002773236.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] gi|239878288|gb|EER05052.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] Length = 350 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/317 (29%), Positives = 150/317 (47%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY WE Y + W E+ + DL W++ L+D++R I L FFA+S+ Sbjct: 27 MFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWEN---LSDNDRHFISHVLAFFAASD 83 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS T+ +I + D E +F Sbjct: 84 GIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIKDPAEKDKIFRAIE 143 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VPS+ KA WAL + D F + L F V EG+ F F I Sbjct: 144 TVPSVRKKAEWALSWIND-------------DNCFSERLIAFACV-EGILFSGSFCAIYW 189 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + N + +T+ ++ ++ A Sbjct: 190 LKKRGLMPGLTFSNELISRDEGLHADFACLLYNMMH------YTRLPDERVHEIVRGAVD 243 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E++P +G+N+ +Y++F+A+R +G L+ T NPF WM ++I L+ Sbjct: 244 VERVFISESLPVSLIGMNSQLMCRYIEFVADRLLVALGHPKLYNAT-NPFDWM-KMISLQ 301 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+G Sbjct: 302 GKTNFFEKRVGEYQKGG 318 >gi|70997335|ref|XP_753417.1| ribonucleotide reductase small subunit RnrA [Aspergillus fumigatus Af293] gi|66851053|gb|EAL91379.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus fumigatus Af293] gi|159126856|gb|EDP51972.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus fumigatus A1163] Length = 405 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 150/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDER I L FFA+S+ Sbjct: 85 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 143 GIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIKEPKQRTYLFDAID 202 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ D + F Q L F V EG++F FA I Sbjct: 203 TIPCIRKKAQWAMRWIS------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFW 249 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ ++ EA Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNHRPDKKVIEDIIVEAVA 302 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ QY++F+A+R +G + F + NPF +M E I L Sbjct: 303 IEQEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYFN-SPNPFDFM-ESISLA 360 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 361 GKTNFFEKRVGDYQKAG 377 >gi|218197485|gb|EEC79912.1| hypothetical protein OsI_21460 [Oryza sativa Indica Group] Length = 345 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/327 (27%), Positives = 154/327 (47%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L SD + P++Y WE Y A + W EV + D W + L+ DER + Sbjct: 23 LLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFVS 80 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GL 140 L FFA+S+ +V N+ + E R + Q E +HS + ++ + G Sbjct: 81 HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGA 140 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 ++ LF VP++ KA+WA+++ D + F + L F V EG++ Sbjct: 141 EKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 186 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ K + + Sbjct: 187 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLR-------GKLDESR 239 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + ++ +A +E + + +P VG+N QY++F+A+R +G + ++ NPF Sbjct: 240 VQEIVADAVDIEREFVCDALPVALVGMNGELMSQYIEFVADRLLMALGCKKMYN-VANPF 298 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV +YQ+ + Sbjct: 299 DWM-ELISLQGKTNFFEKRVGDYQKAS 324 >gi|224129040|ref|XP_002328875.1| predicted protein [Populus trichocarpa] gi|222839305|gb|EEE77642.1| predicted protein [Populus trichocarpa] Length = 329 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/332 (27%), Positives = 157/332 (47%), Gaps = 29/332 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + ++ +L D + P++Y WE Y A + W EV + D+ W++ LT DE Sbjct: 4 IPEEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDIRHWEN---LTPDE 60 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + I L FFA+S+ +V N+ + + E R + Q E +HS + ++ + Sbjct: 61 KHFISHVLAFFAASDGIVLENLAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETY 120 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D E LF+ VP + KA WAL++ D + F + L F V Sbjct: 121 IKDSEEKNRLFHAIETVPCVAKKARWALRWI-------------DGSESFAERLVAFACV 167 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F F I L + M G+ + I RDE LH +F + + ++ K Sbjct: 168 -EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------KK 219 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +++ + ++ +A +E + + +P VG+N QY++F+A+R +G ++ Sbjct: 220 LSEEQVKGIVKDAVDIEREFVVDALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNV 279 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 NPF WM E+I L+ + NFFE RV EYQ+ + Sbjct: 280 A-NPFDWM-ELISLQGKTNFFEKRVGEYQKAS 309 >gi|195485577|ref|XP_002091148.1| GE13485 [Drosophila yakuba] gi|194177249|gb|EDW90860.1| GE13485 [Drosophila yakuba] Length = 393 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 155/315 (49%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W + L DDER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D + LFN Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIE 202 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P++ KA+WAL + +SS S G + + + EG++F FA I Sbjct: 203 TMPAVKRKADWALSW---ISSKSANFGER----------IIAFAAVEGIFFSGSFASIFW 249 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +++ ++ +A Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ-------HLVQRPKRERIIEIIRDAVA 302 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R ++G+ ++ T+NPF +M E+I L Sbjct: 303 IEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISLD 360 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 361 GKTNFFEKKVGEYQR 375 >gi|145537171|ref|XP_001454302.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124422057|emb|CAK86905.1| unnamed protein product [Paramecium tetraurelia] Length = 507 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 100/348 (28%), Positives = 163/348 (46%), Gaps = 31/348 (8%) Query: 5 TGLSPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T LS +Q + V N D+ +L + L P+KY W Y + W E+ + Sbjct: 170 TPLSNLQTSQPVVQQNECDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLY 229 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W+ LT DE+ IK L FFA+S+ +V N+ + PE R + Q Sbjct: 230 QDLKDWEK---LTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIA 286 Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E +HS T+ +I + DE E L + VP I KA WA+++ Sbjct: 287 MENIHSETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKWI------------- 333 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + + F + L F V EG++F F I + + + M G+ + I RDE LH +F Sbjct: 334 NNNDSFAERLIAFAAV-EGIFFSGSFCAIFWIKKRSLMPGLTFSNELISRDEGLHTDFAC 392 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + H+ K Q+ ++ A +E + E +P +G+N+ +QY++F+ Sbjct: 393 -------LLYKHMINKLSIQRVHEIISSAVEIEKEFISEALPVELIGMNSNLMKQYIEFV 445 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 A+R +G ++ ++NPF WM ++I L+ + NFFE RV +YQ+ Sbjct: 446 ADRLIFALGAPKIYN-SKNPFEWM-DMISLQGKTNFFERRVGDYQKAG 491 >gi|58617056|ref|YP_196255.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia ruminantium str. Gardel] gi|58416668|emb|CAI27781.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia ruminantium str. Gardel] Length = 329 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/319 (27%), Positives = 162/319 (50%), Gaps = 25/319 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++ + Sbjct: 17 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQAD-I 73 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y ++ P ++ AF E +H + Y++ ++G+ E E + + + Sbjct: 74 EVNNCYMKHYSNIFKP-TEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 131 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K ++ ++ + K+ + + L VF EG+ + FA +L+ R Sbjct: 132 VMKKKYDYMQRFEEC---------RKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 182 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + + +RDE+LH I + N EN +W + +++ L+EA + + Sbjct: 183 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDGDLKKE----LYEACSVIV 238 Query: 274 AYAHETMPKGFV-----GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 E + F GL+A ++Y+++IANRR Q+ LEP++ +NP W+ E+++ Sbjct: 239 TLEDEFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILN 298 Query: 329 LKKEKNFFETRVTEYQQGA 347 + NFFE RVTEY + A Sbjct: 299 GVEHTNFFENRVTEYTRAA 317 >gi|156102402|ref|XP_001616894.1| ribonucleoside-diphosphate reductase small chain [Plasmodium vivax SaI-1] gi|148805768|gb|EDL47167.1| ribonucleoside-diphosphate reductase small chain, putative [Plasmodium vivax] Length = 349 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/330 (27%), Positives = 161/330 (48%), Gaps = 29/330 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++L+ +D L P+ Y W+ Y A + W E+ + DL K L D+E+ Sbjct: 30 NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL---KDFEKLNDNEKH 86 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 87 FIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIK 146 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 DE E LF+ +P++ KA WA ++ +S + V E Sbjct: 147 DEKERMNLFHAIENIPAVKNKALWAAKWINDTNS--------------FAERIVANACVE 192 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G+ F F I + NK+ G+ + I RDE LH +F + + ++ + P Sbjct: 193 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP------- 245 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G +F + + Sbjct: 246 EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIF-HAK 304 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 NPF WM ++I L+ + NFFE RV +YQ+ Sbjct: 305 NPFNWM-DLISLQGKTNFFEKRVADYQKSG 333 >gi|149408710|ref|XP_001506085.1| PREDICTED: similar to 5,10-methenyltetrahydrofolate synthetase [Ornithorhynchus anatinus] Length = 394 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/330 (29%), Positives = 159/330 (48%), Gaps = 28/330 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L +E Sbjct: 72 VEDEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 128 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 129 KYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 188 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 + E LFN +P + KA+WAL++ G K+A + V + Sbjct: 189 IKEPKEREFLFNAIETLPCVKKKADWALRWI----------GDKEAT---YGERVVAFAA 235 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 236 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHK 288 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +++ + ++ A +E + E +P +G+N +QY++F+A+R ++G +FK Sbjct: 289 PSEERVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLLLELGFSKIFK- 347 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 348 VENPFDFM-ENISLEGKTNFFEKRVGEYQR 376 >gi|302678465|ref|XP_003028915.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8] gi|300102604|gb|EFI94012.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8] Length = 331 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 93/317 (29%), Positives = 152/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + DL W+ N + D+ER I L FFA+S+ Sbjct: 19 LFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWQ--NRMNDNERHFISHVLAFFAASD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + + E LFN Sbjct: 77 GIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIREAAEREHLFNAVE 136 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA WAL++ D F L F V EG++F FA I Sbjct: 137 TIPCVARKAQWALRWIN------------DDRSSFGIRLVAFAAV-EGIFFSGSFASIFW 183 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE +H +F + ++ PH R ++ EA Sbjct: 184 LKKRGLMPGLTFSNELITRDEGMHTDFACLLFAHLR-RRPH------PDVVRRIIMEAVT 236 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ QY++F+A+R +G E ++ T NPF +M ++I L+ Sbjct: 237 IEQEFLTDALPVSLIGMNSTLMCQYIEFVADRLLVALGNEKVYNVT-NPFDFM-DMISLQ 294 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++Y+ A Sbjct: 295 GKTNFFEKRVSDYKMAA 311 >gi|326916502|ref|XP_003204546.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Meleagris gallopavo] Length = 339 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/314 (29%), Positives = 151/314 (48%), Gaps = 28/314 (8%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++Y W Y A + W EV + DL W+S L +E+ I L FFA+S+ Sbjct: 33 FPIQYHDIWRMYKKAEASFWTAEEVDLSKDLQHWES---LKPEEKYFISHVLAFFAASDG 89 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 90 IVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIET 149 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 +P + KA+WA+++ G K A + V + EG++F FA I L Sbjct: 150 LPCVKKKADWAIRWI----------GDKKAT---YGERVVAFAAVEGIFFSGSFASIFWL 196 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 + M G+ + I RDE LH +F + HL K +++ + ++ A L+ Sbjct: 197 KKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLIRKPSEERVKEIIMNAVLI 249 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E + E +P +G+N +QY++F+A+R ++G ++K ENPF +M E I L+ Sbjct: 250 EQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFRKIYK-VENPFDFM-ENISLEG 307 Query: 332 EKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 308 KTNFFEKRVGEYQR 321 >gi|328855581|gb|EGG04707.1| hypothetical protein MELLADRAFT_49061 [Melampsora larici-populina 98AG31] Length = 385 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 151/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W Y A + W E+ + D+ W+ N L DDE+ IK L FFA+S+ Sbjct: 65 LFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWE--NRLNDDEKHFIKHVLAFFAASD 122 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V N++ + E R + Q E +HS + +I + ++ LF+ Sbjct: 123 GIVNENLIERFSGEVQAAEARCFYGFQIMMENIHSEVYSLLIDTYVREPIERSHLFDAID 182 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WAL++ D F + L F V EG++F FA I Sbjct: 183 TIPCIRKKADWALKWIS------------DKQSTFGERLIAFAAV-EGIFFSGSFASIFW 229 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + ++ PH T + ++ +A Sbjct: 230 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLE-RRPHPDT------VQAIISQAVE 282 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G + + ENPF +M E+I L Sbjct: 283 IEKEFLSDALPCKLIGMNADLMCQYIEFVADRLLVALGNDKFYN-AENPFDFM-EMISLS 340 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++Y + Sbjct: 341 GKTNFFEKRVSDYAKAG 357 >gi|121713826|ref|XP_001274524.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus clavatus NRRL 1] gi|119402677|gb|EAW13098.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus clavatus NRRL 1] Length = 405 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/317 (29%), Positives = 150/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W N L DDER I L FFA+S+ Sbjct: 85 LFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 143 GIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIKEPKQRAYLFDAID 202 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ D + F Q L F V EG++F FA I Sbjct: 203 TIPCINKKAQWAMRWIS------------DKESSFGQRLVAFAAV-EGIFFSGSFASIFW 249 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ ++ EA Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPDKKVVEDIIVEAVA 302 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ QY++F+A+R +G + + + NPF +M E I L Sbjct: 303 IEQEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYYN-SPNPFDFM-ESISLA 360 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 361 GKTNFFEKRVGDYQKAG 377 >gi|225849393|ref|YP_002729557.1| ribonucleoside-diphosphate reductase subunit beta [Sulfurihydrogenibium azorense Az-Fu1] gi|225644764|gb|ACN99814.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurihydrogenibium azorense Az-Fu1] Length = 326 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/308 (28%), Positives = 152/308 (49%), Gaps = 6/308 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY E Y W P E+ +Q D+ +KS LT E+ + +G+FASSE LV Sbjct: 20 KYPVFRELYTKQKKAVWFPEELNIQQDVLDYKS---LTPTEKDLFDSAVGYFASSELLVQ 76 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 N + + L++P + Q F E +HS F+ I+ S +D +++N+ E + Sbjct: 77 NVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNSFDMDRKKIYNITLEDKLLKE 136 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ ++ T + ++ L + + ++ EG++FY+ FA ++ KM Sbjct: 137 KQELIVRAVDRITYGKADPDTLEGKKQILTSILLNNIIQEGLFFYSAFAHFFAMKDTGKM 196 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYA 276 + + I+ DESLHL GI+ I + ENP + F + R + +A LE+ Y Sbjct: 197 KNVVAGVELILIDESLHLQNGIEAILTMVEENPEIVDDYNFVENIRQSIIDAVELELNYL 256 Query: 277 HETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 + G++ E+YM++IA+RR ++G +P F +NP ++ + D+KK NF Sbjct: 257 KTKFGGTTIFGVSYNELERYMKYIADRRLVELGFDPQFGIDQNPLKFLQKE-DVKKLTNF 315 Query: 336 FETRVTEY 343 FE TEY Sbjct: 316 FEVSSTEY 323 >gi|321263777|ref|XP_003196606.1| ribonucleoside-diphosphate reductase [Cryptococcus gattii WM276] gi|317463083|gb|ADV24819.1| Ribonucleoside-diphosphate reductase, putative [Cryptococcus gattii WM276] Length = 401 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W++K L D+ER I+ L FFA+S+ Sbjct: 86 LFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWENK--LNDNERYFIEHVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +H+ T+ +I + D LF+ Sbjct: 144 GIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAETYSLLIDTYIKDTARRNFLFDAMD 203 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WAL++ D F + L F V EG++F FA I Sbjct: 204 TIPCIRKKADWALRWIS------------DKRSCFGERLIAFAAV-EGIFFSGSFASIFW 250 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + ++ PH T ++ EA Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFTHLR-RRPHPDT------IARIIKEAVS 303 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G E ++ T NPF +M E+I L+ Sbjct: 304 IEQEFLTDALPVSLIGMNAKLMCQYIEFVADRLLVALGNEKIWNST-NPFDFM-EMISLQ 361 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE+RV+ Y + Sbjct: 362 GKANFFESRVSAYSKSG 378 >gi|313213932|emb|CBY40745.1| unnamed protein product [Oikopleura dioica] Length = 418 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 152/317 (47%), Gaps = 29/317 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ WK L +E+ IK L FFA+S+ Sbjct: 106 IFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWKK---LKKEEQFFIKHVLAFFAASD 162 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS + +I +L D E LFN Sbjct: 163 GIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKLIENLVHDTKEKMGLFNAIE 222 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P+I KA+WAL++ AD + + F V EG++F FA I Sbjct: 223 TMPAIKKKADWALKWI-------------GADAPYSVRVIAFAAV-EGIFFSGSFAAIFW 268 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + H+ K Q++ ++ +A Sbjct: 269 LKKRGLMPGVTFSNELISRDEGLHTDFAC-------LMYKHMVQKPSQEQIIAIIRDAVS 321 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N + Y++F+A+R ++ ++K ENPF +M E+I L+ Sbjct: 322 IEQEFLTDALPVRLIGMNCDLMKTYIEFVADRLLVELDCPKIYK-VENPFDFM-EMISLE 379 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE +V+EY + Sbjct: 380 GKTNFFEKKVSEYARAG 396 >gi|56118690|ref|NP_001007890.1| ribonucleotide reductase M2, gene 2 [Xenopus (Silurana) tropicalis] gi|51258920|gb|AAH80161.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana) tropicalis] Length = 386 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/334 (29%), Positives = 158/334 (47%), Gaps = 28/334 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + D+ +L + P++Y W+ Y A + W EV + DL W+S L Sbjct: 60 KDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES---L 116 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +E+ I L FFA+S+ +V N+V + + E R + Q E +HS + + Sbjct: 117 KAEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLL 176 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + D E LFN +P + KA+WAL++ G K A + V Sbjct: 177 IDTYIKDPKEREYLFNAIETLPCVKKKADWALRWI----------GDKQAT---YGERVV 223 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I L + M G+ + I RDE LH +F + H Sbjct: 224 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------H 276 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L K +++ ++ +A +E + E +P +G+N +QY++F+A+R ++G Sbjct: 277 LVNKPSEERVVQLITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLLLELGFNK 336 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +FK T NPF +M E I L+ + NFFE +V EYQ+ Sbjct: 337 VFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQK 368 >gi|88658048|ref|YP_507564.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia chaffeensis str. Arkansas] gi|88599505|gb|ABD44974.1| ribonucleoside-diphosphate reductase, beta subunit [Ehrlichia chaffeensis str. Arkansas] Length = 324 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 161/319 (50%), Gaps = 25/319 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKT--VLSEKEKNLLVQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y ++ P ++ AF E +H + Y++ ++G+ E E + + + Sbjct: 69 EVNNCYMKHYSNIFKP-TEVCMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K + Y Q F K+ + + L VF EG+ + FA +L+ R Sbjct: 127 VMKKKYD----YMQ-----RFEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + + +RDE+LH I + N EN +W +Q+ L+EA + + Sbjct: 178 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDSLKQE----LYEACRIIV 233 Query: 274 AYAHETMPKGFV-----GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 + E + F GL++ ++Y+++IANRR Q+ LEP++ +NP W+ E+++ Sbjct: 234 SLEDEFINLAFACGDVEGLSSKEVKEYIRYIANRRLLQLNLEPIYDTNKNPLLWLDEILN 293 Query: 329 LKKEKNFFETRVTEYQQGA 347 + NFFE RVTEY + A Sbjct: 294 GVEHTNFFENRVTEYARAA 312 >gi|58260896|ref|XP_567858.1| ribonucleoside-diphosphate reductase [Cryptococcus neoformans var. neoformans JEC21] gi|134116993|ref|XP_772723.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255341|gb|EAL18076.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229939|gb|AAW46341.1| ribonucleoside-diphosphate reductase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 401 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/317 (29%), Positives = 153/317 (48%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W++K L D+ER I+ L FFA+S+ Sbjct: 86 LFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWENK--LNDNERYFIEHVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +H+ T+ +I + D LF+ Sbjct: 144 GIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAETYSLLIDTYIKDTARRNFLFDAID 203 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WAL++ D F + L F V EG++F FA I Sbjct: 204 TIPCIRKKADWALRWIS------------DKRSCFGERLIAFAAV-EGIFFSGSFASIFW 250 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + ++ PH T ++ EA Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFTHLR-RRPHPDT------IARIIKEAVT 303 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G E ++ T NPF +M E+I L+ Sbjct: 304 IEQEFLTDALPVSLIGMNAKLMCQYIEFVADRLLVAMGNEKIWNST-NPFDFM-EMISLQ 361 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE+RV+ Y + Sbjct: 362 GKANFFESRVSAYSKSG 378 >gi|115466138|ref|NP_001056668.1| Os06g0127900 [Oryza sativa Japonica Group] gi|55296211|dbj|BAD67929.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group] gi|113594708|dbj|BAF18582.1| Os06g0127900 [Oryza sativa Japonica Group] gi|186920368|gb|ACC95437.1| ribonucleotide diphosphate reductase small subunit 2 [Oryza sativa Japonica Group] gi|215706414|dbj|BAG93270.1| unnamed protein product [Oryza sativa Japonica Group] gi|222634884|gb|EEE65016.1| hypothetical protein OsJ_19968 [Oryza sativa Japonica Group] Length = 345 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/327 (27%), Positives = 154/327 (47%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L SD + P++Y WE Y A + W EV + D W + L+ DER + Sbjct: 23 LLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFVS 80 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E R + Q E +HS + ++ + D+ Sbjct: 81 HVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDV 140 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF VP++ KA+WA+++ D + F + L F V EG++ Sbjct: 141 EKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIF 186 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ K + + Sbjct: 187 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLR-------GKLDESR 239 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + ++ +A +E + + +P VG+N QY++F+A+R +G + ++ NPF Sbjct: 240 VQEIVADAVDIEREFVCDALPVALVGMNGELMSQYIEFVADRLLMALGCKKMYN-VANPF 298 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV +YQ+ + Sbjct: 299 DWM-ELISLQGKTNFFEKRVGDYQKAS 324 >gi|195436539|ref|XP_002066225.1| GK22247 [Drosophila willistoni] gi|194162310|gb|EDW77211.1| GK22247 [Drosophila willistoni] Length = 395 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 154/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W LTD+ER I L FFA+S+ Sbjct: 88 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWAR---LTDNERHFISHVLAFFAASD 144 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 145 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSILIDTYIRDPQERDYLFNAVE 204 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P++ KA+WAL + +SS + G + + + EG++F FA I Sbjct: 205 TMPAVKRKADWALSW---ISSKAANFGER----------IIAFAAVEGIFFSGSFASIFW 251 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +++ ++ +A Sbjct: 252 LKKRGLMPGLTFSNEMISRDEGLHCDFAVLMFQ-------HLVQRPSRERIIEIIRDAVQ 304 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N QY++F+A+R ++G+ ++ T+NPF +M E+I L Sbjct: 305 IEQEFLTVALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFSFM-EMISLD 362 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 363 GKTNFFEKKVGEYQR 377 >gi|198420293|ref|XP_002130242.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit M2 (Ribonucleotide reductase small subunit) (Ribonucleotide reductase small chain) [Ciona intestinalis] Length = 393 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 153/317 (48%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W++ L +ER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDMVHWEA---LKPNERKFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 143 GIVNENLVERFAQEVQITEARFFYGFQIAIENIHSEMYSLLINTYIRDTHEREFLFNAIE 202 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA WAL++ D++ + + + F V EG++F FA I Sbjct: 203 TLPCVRKKAEWALKWIS------------DSESTYAERIIAFASV-EGIFFSGSFAAIFW 249 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL K + + ++ +A Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHKPSEARVVEIVKDAVT 302 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N +QY++F+A+R ++G +FK ENPF +M E+I L+ Sbjct: 303 IEQEFLTDALPVALIGMNNKLMKQYIEFVADRLLVELGCSKVFK-VENPFDFM-ELISLE 360 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ Sbjct: 361 GKTNFFEKRVGEYQKAG 377 >gi|157126966|ref|XP_001654749.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti] gi|15638625|gb|AAL05057.1|AF411297_1 ribonucleotide reductase 2 [Aedes aegypti] gi|82469974|gb|ABB77235.1| ribonucleotide reductase small subunit R2 [Aedes aegypti] gi|108873070|gb|EAT37295.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti] Length = 397 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/315 (29%), Positives = 153/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DLA W+ L E+ I L FFA+S+ Sbjct: 90 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLADWEK---LKSGEKHFISHVLAFFAASD 146 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 147 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDSKEREYLFNAID 206 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL + +SS G + V + EG++F FA I Sbjct: 207 NLPCVKKKADWALNW---ISSKKANFGER----------VVAFAAVEGIFFSGSFASIFW 253 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + +L K Q++ ++ EA L Sbjct: 254 LKKRGLMPGLTFSNELISRDEGLHTDFACLMFK-------YLVQKPSQERVIEIIREAVL 306 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R ++G++ ++ T+NPF +M E I L+ Sbjct: 307 IEQEFLTKALPVDLLGMNCDLMSQYIEFVADRLLLELGIDKIYN-TKNPFSFM-EFISLE 364 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 365 GKTNFFEKKVGEYQK 379 >gi|313235850|emb|CBY19835.1| unnamed protein product [Oikopleura dioica] Length = 382 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 152/317 (47%), Gaps = 29/317 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ WK L +E+ IK L FFA+S+ Sbjct: 70 IFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWKK---LKKEEQFFIKHVLAFFAASD 126 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS + +I +L D E LFN Sbjct: 127 GIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKLIENLVHDTKEKMGLFNAIE 186 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P+I KA+WAL++ AD + + F V EG++F FA I Sbjct: 187 TMPAIKKKADWALKWI-------------GADAPYSVRVIAFAAV-EGIFFSGSFAAIFW 232 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + H+ K Q++ ++ +A Sbjct: 233 LKKRGLMPGVTFSNELISRDEGLHTDFAC-------LMYKHMVQKPSQEQIIAIIRDAVS 285 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N + Y++F+A+R ++ ++K ENPF +M E+I L+ Sbjct: 286 IEQEFLTDALPVRLIGMNCDLMKTYIEFVADRLLVELDCPKIYK-VENPFDFM-EMISLE 343 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE +V+EY + Sbjct: 344 GKTNFFEKKVSEYARAG 360 >gi|213511642|ref|NP_001133495.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar] gi|209154228|gb|ACI33346.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar] Length = 387 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/315 (29%), Positives = 149/315 (47%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y A + W EV + D W S L D+ER I L FFA+S+ Sbjct: 80 IFPIKYHDIWQMYKKAEASFWTAEEVDLSKDTQHWDS---LKDEERYFISHVLAFFAASD 136 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 137 GIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERDYLFNAIE 196 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL + G K+A + V + EG++F FA I Sbjct: 197 TLPCVKRKADWALNW----------IGNKNAG---FGERVVAFAAVEGIFFSGSFAAIFW 243 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL K ++ ++ A Sbjct: 244 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPSKETVTKLIRNAVE 296 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R ++G + +++ ENPF +M E I L+ Sbjct: 297 IEQEFLTKALPVKLIGMNCDLMTQYIEFVADRLMLELGFDKIYR-VENPFDFM-ENISLE 354 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 355 GKTNFFEKRVGEYQR 369 >gi|325478871|gb|EGC81981.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 352 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 96/331 (29%), Positives = 168/331 (50%), Gaps = 20/331 (6%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++N LKY W + Y A NN W+P E+ + D+ K L + E+ R L F Sbjct: 34 TNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDI---KDYRNLDEHEKRAFDRILSF 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 +S+ N+ + +++ E L Q ++E++HS ++ YI+ ++ E + Sbjct: 91 LTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHSQSYSYILDTICSPEERTRIL 149 Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 +++E + + + QY + L + D + F++ L Y++ EG++FY+GF Sbjct: 150 YLWKEDEHLLKRNEFIGEQYNEFLKN--------DDEFRFMKALVANYIL-EGIYFYSGF 200 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 + +LGR KM G ++ +YI RDE+ HL +IN ++ E L+TKE ++ R ML Sbjct: 201 SFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLRKEREDLFTKEHKEYYRNML 260 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP--FPW 322 E EIA+ + GL+ E Y++++ N R +GLE L++ YTE P W Sbjct: 261 KEGVEQEIAWGKYAIGDNIAGLSEKMIEDYIKYLGNLRAKGLGLEALYEGYTEIPDSMKW 320 Query: 323 MSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 + E D K +FFE +VT Y + + ++ D Sbjct: 321 VDEYSDPNAVKTDFFEAKVTAYSKSSIIEDD 351 >gi|169860861|ref|XP_001837065.1| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] gi|116501787|gb|EAU84682.1| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] Length = 414 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 94/317 (29%), Positives = 151/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + DL W N L D+ER I L FFA+S+ Sbjct: 95 LFPIQYHEIWQMYKKAEASFWTAEEMDLSKDLHDWN--NKLNDNERHFISHVLAFFAASD 152 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + E R + Q E +HS T+ +I + D + LF+ Sbjct: 153 GIVNENLLERFSNEVQAAEARCFYGFQIMMENIHSETYSLLIDTYIKDPAQRDYLFDAVD 212 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WAL T D F + L F V EG++F FA I Sbjct: 213 TIPCIKKKADWAL------------TWISDQKSTFAERLVAFAAV-EGIFFSGSFASIFW 259 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE +H +F + + +K PH + ++ EA Sbjct: 260 LKKRGLMPGLTFSNELISRDEGMHTDFACLLFSHLK-RRPH------PDVVKRIITEAVA 312 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G E ++ T NPF +M ++I L+ Sbjct: 313 IEQEFLTDALPVKLIGMNAELMCQYIEFVADRLLVSLGNEKVYNST-NPFDFM-DMISLQ 370 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++Y + Sbjct: 371 GKTNFFEKRVSDYAKAG 387 >gi|169613737|ref|XP_001800285.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15] gi|111061216|gb|EAT82336.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15] Length = 409 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/318 (29%), Positives = 151/318 (47%), Gaps = 28/318 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W + L DDER I L FFA+S+ Sbjct: 83 LFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNKR--LNDDERFFISHVLAFFAASD 140 Query: 94 SLVANNIVLAIYR-HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +V N+V + + PE R + Q E +HS T+ +I + + + LFN Sbjct: 141 GIVNENLVDERFSSEVQIPEARCFYGFQIMMENIHSETYSLLIDTYISEPRQRTYLFNAI 200 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 +P I KA+WAL++ D + F L F V EG++F FA I Sbjct: 201 DNIPCIRKKADWALKWIS------------DKNSTFANRLVAFAAV-EGIFFSGSFASIF 247 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 L + M G+ + I RDE +H +F + + + T+ + + ++ EA Sbjct: 248 WLKKRGLMPGLTFSNELISRDEGMHTDFACLLFSLLN-------TRPSKDAVKAIITEAV 300 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E + E +P +G+N+ QY++F+A+R +G ++ T NPF +M E I L Sbjct: 301 EIEQEFLTEALPCALLGMNSTLMCQYIEFVADRLLLALGNTKVYNAT-NPFDFM-ENISL 358 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 359 AGKTNFFEKRVGDYQKAG 376 >gi|189184364|ref|YP_001938149.1| ribonucleotide-diphosphate reductase subunit beta [Orientia tsutsugamushi str. Ikeda] gi|189181135|dbj|BAG40915.1| ribonucleoside-diphosphate reductase beta chain [Orientia tsutsugamushi str. Ikeda] Length = 359 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 169/339 (49%), Gaps = 36/339 (10%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LNAR P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++ Sbjct: 18 LLNARPIYK---PFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWKY--NLTPGEKHLLT 72 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLD 141 + FF ++ + NN + Y + P Q +L AF E +H + +++ ++G+ Sbjct: 73 QIFRFFTQAD-IEVNNCYMKHYARVFQPTEVQMML-SAFSNMETIHIAAYSHLLDTIGMP 130 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 E E + + + ++ K ++ ++ D +E L VF EG+ Sbjct: 131 ETE-YQAFMKYKAMKDKYDYMQRFN------------VDNKEEIATTLAVFGAFTEGVQL 177 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 + FA +L+ R NKM G+ + + +RDE+LH N I + E P +WT+ Q KS Sbjct: 178 FASFAILLNFPRYNKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTE--QLKS 235 Query: 262 R------TMLH-EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 R T++H E +++A+ G GL A ++Y+++IA+RR Q+GL+ + Sbjct: 236 RIYEACCTIIHFEDAFIDLAFE----VGGVEGLEARDVKKYIRYIADRRLLQLGLKENYL 291 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 352 +NP W+ ++++ + NFFE RVTEY + A WD Sbjct: 292 IEQNPLTWLDQILNGVEHTNFFENRVTEYTRSATTGSWD 330 >gi|114621164|ref|XP_001153859.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] gi|332214017|ref|XP_003256123.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like [Nomascus leucogenys] gi|332830969|ref|XP_003311933.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Pan troglodytes] gi|119612248|gb|EAW91842.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_c [Homo sapiens] gi|194385642|dbj|BAG65196.1| unnamed protein product [Homo sapiens] Length = 297 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 28/305 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V Sbjct: 2 YKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + PE R + Q E VHS + +I + D + LFN +P + KA+WA Sbjct: 59 QEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWA 118 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L++ S T G + V + EG++F FA I L + M G+ Sbjct: 119 LRWIADRKS---TFGER----------VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTF 165 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I RDE LH +F + +L K +++ R ++ +A +E + E +P Sbjct: 166 SNELISRDEGLHCDFACLMFQ-------YLVNKPSEERVREIIVDAVKIEQEFLTEALPV 218 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 G +G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV+E Sbjct: 219 GLIGMNCILMKQYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSE 276 Query: 343 YQQGA 347 YQ+ A Sbjct: 277 YQRFA 281 >gi|148284015|ref|YP_001248105.1| ribonucleotide-diphosphate reductase subunit beta [Orientia tsutsugamushi str. Boryong] gi|146739454|emb|CAM79093.1| ribonucleoside-diphosphate reductase beta chain [Orientia tsutsugamushi str. Boryong] Length = 329 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 169/339 (49%), Gaps = 36/339 (10%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LNAR P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++ Sbjct: 3 LLNARPIYK---PFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWKY--NLTPGEKHLLT 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLD 141 + FF ++ + NN + Y + P Q +L AF E +H + +++ ++G+ Sbjct: 58 QIFRFFTQAD-IEVNNCYMKHYARVFQPTEVQMML-SAFSNMETIHIAAYSHLLDTIGMP 115 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 E E + + + ++ K ++ ++ D +E L VF EG+ Sbjct: 116 ETE-YQAFMKYKAMKDKYDYMQRFN------------VDNKEEIATTLAVFGAFTEGVQL 162 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 + FA +L+ R NKM G+ + + +RDE+LH N I + E P +WT+ Q KS Sbjct: 163 FASFAILLNFPRYNKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTE--QLKS 220 Query: 262 R------TMLH-EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 R T++H E +++A+ G GL A ++Y+++IA+RR Q+GL+ + Sbjct: 221 RIYEACCTIIHFEDAFIDLAFE----VGGVEGLEARDVKKYIRYIADRRLLQLGLKENYL 276 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 352 +NP W+ ++++ + NFFE RVTEY + A WD Sbjct: 277 IEQNPLTWLDQILNGVEHTNFFENRVTEYTRSATTGSWD 315 >gi|290343623|ref|YP_003494990.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1] gi|260161038|emb|CAY39739.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1] Length = 389 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 96/313 (30%), Positives = 150/313 (47%), Gaps = 28/313 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PLKY WE Y A ++W EV + DL WK+ L ++E+ IK L FFA S+ Sbjct: 86 VFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNENEQKFIKYILAFFAGSD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V NI + E R + Q E VH T+ +I D + ELF + Sbjct: 143 GIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDPSEKKELFEAIQ 202 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP I KA WA+++ T S + F + LF F V EG++F F I Sbjct: 203 TVPCIEKKAQWAMKWFDTKS------------RSFAERLFAFACV-EGIFFSGSFCAIFW 249 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH F +++ ++ P + T ++ EA Sbjct: 250 LKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLR-NRPGVDT------IHAIVREAVD 302 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ +Y++++++R QIG+ P ++NPF +M E I L Sbjct: 303 IEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQIGV-PTIWNSKNPFDFM-ENISLD 360 Query: 331 KEKNFFETRVTEY 343 + NFFE RV +Y Sbjct: 361 GKTNFFEKRVGDY 373 >gi|188996383|ref|YP_001930634.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931450|gb|ACD66080.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp. YO3AOP1] Length = 326 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 87/308 (28%), Positives = 152/308 (49%), Gaps = 6/308 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y E Y W P E+ +Q D+ +KS L+ E+ + +G+FASSE LV Sbjct: 20 RYPIFKELYTKQKKAVWFPEELNIQQDVLDYKS---LSPTEKDLFDSAVGYFASSELLVQ 76 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 N + + L++P + Q F E +HS F+ I+ S +D ++N+ E + Sbjct: 77 NVVGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNSFDMDRKRIYNITLEDKLLKE 136 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ ++ T + ++ L + + ++ EG++FY+ FA ++ KM Sbjct: 137 KQELIVRAVDRITYGKADPDTIEGKKQILTSILLNNIIQEGLFFYSAFAHFFAMKDTGKM 196 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYA 276 + + I+ DESLHL GI+ I + ENP + +F + R + +A LE+ Y Sbjct: 197 KNVVSGVELILIDESLHLQNGIEAILTMVEENPEIVDDYQFVENIRQSIIDAVELELNYL 256 Query: 277 HETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 + G++ E+YM++IA+RR ++G +P F +NP ++ + D+KK NF Sbjct: 257 KTKFGGTTIFGVSYGELERYMKYIADRRLIELGFDPQFGIDQNPLKFLQKE-DVKKLTNF 315 Query: 336 FETRVTEY 343 FE TEY Sbjct: 316 FEVSSTEY 323 >gi|163955147|ref|YP_001648251.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5] gi|163638596|gb|ABY27955.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5] Length = 322 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 96/313 (30%), Positives = 150/313 (47%), Gaps = 28/313 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PLKY WE Y A ++W EV + DL WK+ L ++E+ IK L FFA S+ Sbjct: 19 VFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNENEQKFIKYILAFFAGSD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V NI + E R + Q E VH T+ +I D + ELF + Sbjct: 76 GIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKDPSEKKELFEAIQ 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP I KA WA+++ T S + F + LF F V EG++F F I Sbjct: 136 TVPCIEKKAQWAMKWFDTKS------------RSFAERLFAFACV-EGIFFSGSFCAIFW 182 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH F +++ ++ P + T ++ EA Sbjct: 183 LKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLR-NRPGVDT------IHAIVREAVE 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ +Y++++++R QIG+ P ++NPF +M E I L Sbjct: 236 IEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQIGV-PTIWNSKNPFDFM-ENISLD 293 Query: 331 KEKNFFETRVTEY 343 + NFFE RV +Y Sbjct: 294 GKTNFFEKRVGDY 306 >gi|289449785|ref|YP_003474451.1| ribonucleoside-diphosphate reductase subunit beta [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184332|gb|ADC90757.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 400 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/342 (26%), Positives = 166/342 (48%), Gaps = 23/342 (6%) Query: 17 VNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + +D K+M+ +++N +KY W + Y NN W+P E+ M D+ +++ L Sbjct: 69 IGLDKKKMIGGNPTNLNDFNNVKYKWVSDIYRQMMNNFWIPEEINMSTDVQQYRT---LP 125 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER + L F +SL NN+ I ++++ E L QAF+EAVHS ++ Y++ Sbjct: 126 VAERRAYDKILSFLVFLDSLQTNNVPF-IAQYITANEAVLCLTIQAFQEAVHSQSYSYML 184 Query: 136 TSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ + E+ +R+ + A+ + F D + L + V Sbjct: 185 DTICSPDERTEILYQWRDDEHLLARNKFI--------GDLFMAFQNDQSERNLMRVLVAN 236 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++++++++E P L+ Sbjct: 237 YILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFRNILSELQVERPDLF 296 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + E ++ R M+ E EIA+ H + GL Y+Q++AN R +G + Sbjct: 297 SAELVEEYRAMIKEGAEQEIAWGHYVLGDDIPGLTRQMVTDYIQYLANLRAQNLGFA--Y 354 Query: 314 KYTEN-----PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 Y +N W+S+ D K +FFE + T Y + + Sbjct: 355 IYPDNHSEPASMSWISQYSDANMVKTDFFEAKSTAYAKSTAM 396 >gi|255954081|ref|XP_002567793.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589504|emb|CAP95650.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255] Length = 400 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 94/317 (29%), Positives = 150/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y A + W E+ + DL W N L DDER I L FFA+S+ Sbjct: 81 MFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWH--NRLNDDERYFISHVLAFFAASD 138 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E +HS T+ +I + + + LF+ Sbjct: 139 GIVNENLVERFSAEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAID 198 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P IT KANWA+++ D + F L F V EG++F FA I Sbjct: 199 TIPCITKKANWAIRWIN------------DRESTFASRLVAFAAV-EGIFFSGSFASIFW 245 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + H+ + + ++ EA Sbjct: 246 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HMNHRPDPKVVEEIIVEAVG 298 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ QY++F+A+R +G + + + NPF +M E I L Sbjct: 299 IEQEFLTDALPCALLGMNSKLMCQYIEFVADRLLVALGNKKYYN-SANPFDFM-ESISLA 356 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 357 GKTNFFEKRVGDYQKAG 373 >gi|324509007|gb|ADY43795.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum] Length = 337 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 97/319 (30%), Positives = 148/319 (46%), Gaps = 28/319 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W Y +A + W E+ + D A W+ LTD ER I R L FFA+S+ Sbjct: 30 IFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWEK---LTDGERFFISRVLSFFAASD 86 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 +V N+ + PE R + Q E VHS + +I + D E F+ Sbjct: 87 GIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVHSEMYSKMIEAYIKDPKEQMVHFDAIH 146 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + I KA+WAL++ +SP F L F V EG+ F FA I Sbjct: 147 QFECIKKKADWALRWIDDRNSP------------FPVRLIAFAAV-EGIMFSGSFAAIFW 193 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + IK K Q++ ++ EA Sbjct: 194 LKKRGVMKGLTHSNELISRDEGLHRDFACLLYKYIK-------HKPSQEQVYEIIKEAVS 246 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 LE Y E +P +G+N QY++++A+ ++G ++ NPF +M E + ++ Sbjct: 247 LEQEYLTEALPVDLIGMNCRLMSQYIEYVADHLLTELGYPKVYN-ASNPFDFM-ENLSIE 304 Query: 331 KEKNFFETRVTEYQQGAEL 349 + NFFE RV+EYQ+ L Sbjct: 305 AKTNFFERRVSEYQRAGVL 323 >gi|73666936|ref|YP_302952.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia canis str. Jake] gi|72394077|gb|AAZ68354.1| Ribonucleoside-diphosphate reductase [Ehrlichia canis str. Jake] Length = 324 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 160/319 (50%), Gaps = 25/319 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF ++ + Sbjct: 12 PFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKT--VLSEKEKNLLVQIFRFFTQAD-I 68 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 NN + Y ++ P ++ AF E +H + Y++ ++G+ E E + + + Sbjct: 69 EVNNCYMRHYSNIFKP-TEVCMMLAAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K + Y Q F K+ + + L VF EG+ + FA +L+ R Sbjct: 127 VMKKKYD----YMQ-----KFEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + + +RDE+LH I + N EN +W + + L+EA + + Sbjct: 178 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFVQENYEIWDDSLKHE----LYEACKIIV 233 Query: 274 AYAHETMPKGFV-----GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 + E + F GL+A ++Y+++IANRR Q+ LEP++ +NP W+ E+++ Sbjct: 234 SLEDEFINLAFACGDVEGLSAKEVKKYIRYIANRRLLQLNLEPIYDANKNPLLWLDEILN 293 Query: 329 LKKEKNFFETRVTEYQQGA 347 + NFFE RVTEY + A Sbjct: 294 GVEHTNFFENRVTEYARAA 312 >gi|325181522|emb|CCA15972.1| ribonucleosidediphosphate reductase small chain put [Albugo laibachii Nc14] Length = 1611 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 165/352 (46%), Gaps = 28/352 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 ++++ ++P + E + + L + L P++ W+ Y A + W E+ Sbjct: 49 LSDSNSITPFKEKEMNGQLLPEPFLRENPNRFVLFPIQQSEIWDMYKKAEASFWTAEEID 108 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D+ W + ++D+ER IK L FFA+S+ +V N+ + + PE R + Q Sbjct: 109 LVHDMNDWLN---ISDNERHFIKHVLAFFAASDGIVNENLAMNFSSEVQIPEARCFYGFQ 165 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS + +I + D E L +P +T KA WAL++ Sbjct: 166 IAIENIHSEVYSLLIDTYIKDPTEKQHLLCAIETIPCVTNKAQWALKWC----------- 214 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 D + V + EG++F F I L + M G+ + I RDE LH +F Sbjct: 215 --DPKCASFAERVVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLCFSNELISRDEGLHCDF 272 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + +++ + P + ++ +A ++E + +++P +G+N+ QY++ Sbjct: 273 ACLMYSKLVNKLP-------EASIHAIISDAVVIEQEFVRDSLPVELIGMNSSLMGQYIE 325 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 F+A+R H +G+ L+ +T NPF WM ++I L+ + NFFE RV EY + + Sbjct: 326 FVADRLLHALGVSKLY-HTSNPFDWM-DMISLQGKTNFFEKRVGEYAKSGTI 375 >gi|22788780|ref|NP_690492.1| Rr2 [Heliothis zea virus 1] gi|22671540|gb|AAN04367.1|AF451898_72 Rr2 [Heliothis zea virus 1] Length = 333 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/316 (29%), Positives = 155/316 (49%), Gaps = 26/316 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y WE Y A + W EV + DL W+++ LT+ ER I L FFA S+ Sbjct: 22 LFPIRYHDIWEMYKKAQASFWTVEEVDLSKDLYDWETR--LTETEREFISHILAFFAGSD 79 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V +N++ + L+ PE + Q E VHS + +I D LFN Sbjct: 80 GIVNDNLLTRFSQELTIPEVSCFYGFQIMIENVHSEMYSTLIDMYIRDPQRKHMLFNAID 139 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VPSI KA W +++ D D+ D V + EG++F FA I Sbjct: 140 TVPSIRKKAQWVIRWI-------------DDDKSSYADRLVAFAAVEGIFFSGSFAAIFW 186 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRTMLHEAT 269 L + M G+ ++I RDE LH +F I + N ++ E + +K ++ +A Sbjct: 187 LKKRGLMPGLTHSNEFISRDEGLHCDFAILLFRNYLRPE-----CRSSDEKVINIVTDAV 241 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E + E++P +G+N +Y++F+A+R +++ ++ +NPF +M+ I L Sbjct: 242 RIEQEFLTESLPVSMIGMNCKLMCEYIEFVADRLLYELIGRKIYN-AKNPFDFMTS-ISL 299 Query: 330 KKEKNFFETRVTEYQQ 345 + + NFFE +V+EY++ Sbjct: 300 EGKTNFFEKKVSEYKR 315 >gi|215401441|ref|YP_002332744.1| RR2b [Spodoptera litura nucleopolyhedrovirus II] gi|209483982|gb|ACI47415.1| RR2b [Spodoptera litura nucleopolyhedrovirus II] Length = 313 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/318 (29%), Positives = 155/318 (48%), Gaps = 32/318 (10%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W Y A + W EV + D + K LTD+ER I++ L FFA+++ Sbjct: 8 LFPIQHIDLWTAYKQALDCMWKVEEVDLSKDYDDFTQK--LTDNERNFIEKILAFFAAAD 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR 150 S+V NI+ + R + E + + +Q E +H+ + +I +L DE L N + Sbjct: 66 SIVNINIIEHMQRTVPELEAQYFYNQQVLIECIHTEMYNLLIHALIKDEEKQATLLNGFE 125 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA WA++Y + + L + + + + EG++F FA I Sbjct: 126 SMPCVRRKAEWAMKYIENENVT-------------LAERLIAFAIVEGVFFSGSFAAIFY 172 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN---QIKIENPHLWTKEFQQKSRTMLHE 267 + M G+ + I RDE LH NF N K++ P + M E Sbjct: 173 MKTKGVMPGLTFSNELISRDEGLHTNFACLYYNTRVDQKLDVPTV---------SDMFAE 223 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A +E+ + E +P+ VG+NA +Y++F+A+R Q+ P +TENPF +M+ I Sbjct: 224 AVAIEMEFFAEALPESLVGMNAEMMRKYIEFVADRLLVQLKY-PKIYHTENPFEFMNN-I 281 Query: 328 DLKKEKNFFETRVTEYQQ 345 L+ + NFFE RV EY++ Sbjct: 282 SLEGKTNFFEKRVGEYKR 299 >gi|299747484|ref|XP_001837064.2| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] gi|298407540|gb|EAU84681.2| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] Length = 379 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 97/338 (28%), Positives = 159/338 (47%), Gaps = 28/338 (8%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 GE + ++ +L L P++Y W Y A + W E+ + D+ W Sbjct: 45 VGEVDLPESEEPLLKPSPKRLTLYPIQYPEIWTHYKRAQASFWTAEEIDLSHDMMDW--- 101 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 + LT+ ER + R L FFASS+ +V N+V + PE R + Q E VHS T+ Sbjct: 102 SKLTNAERHFLSRILAFFASSDGIVNENLVERFSSEVQVPEARCFYGFQVMIENVHSETY 161 Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 +I + D E LF +PSI KA WAL T T D F + Sbjct: 162 SLLIDTYIKDPEERDFLFRAIETIPSIQRKAEWAL------------TWTSDKSTTFAER 209 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L F VV EG++F FA I + + + G+ + I RDE +H +F + ++ + Sbjct: 210 LVAFAVV-EGVFFSGSFAAIFWMRKRGLLPGLTFSNELISRDEGMHTDFACLLFAYLR-K 267 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 PH ++ EA +E + + +P +G+N+ QY++F+A+R +G Sbjct: 268 RPH------SDTILAIVTEAVEIEKEFFSDALPVSLIGMNSSLMNQYIEFVADRLLTSLG 321 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 + + + +NPF +M E+I ++ + NFFE RV++Y + Sbjct: 322 NDKHY-HVDNPFDFM-ELISMEGKANFFEKRVSDYAKA 357 >gi|929959|gb|AAA74020.1| ribonuleotide reductase small subunit [Urechis caupo] Length = 399 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 150/315 (47%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D++ W+ L +E+ + L FFA+S+ Sbjct: 89 VFPIQYNDIWQMYKKAEASFWTAEEVDLSKDISDWEK---LKSEEKHFVSHVLAFFAASD 145 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 146 GIVNENLVERFSKEVQVTEARCFYGYQIAVENIHSEMYSLLIDTYVKDPTERDFLFNAIE 205 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL++ D F + + F V EG++F FA I Sbjct: 206 TMPCVKEKADWALRWIN------------DEQSSFGERVVAFAAV-EGIFFSGSFASIFW 252 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL K Q++ ++ +A Sbjct: 253 LKKRGVMPGLTFSNELISRDEGLHCDFACLMFS-------HLKNKPSQERVYDIIRDAVR 305 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E ++ E +P +G+N QY++F+A+R ++G P ENPF +M I L+ Sbjct: 306 IEQSFLTEALPVNLIGMNCKLMAQYIEFVADRLLLELGC-PKIWNVENPFDFMDN-ISLE 363 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 364 GKTNFFEKRVGEYQK 378 >gi|227485717|ref|ZP_03916033.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus ATCC 51172] gi|227236272|gb|EEI86287.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus ATCC 51172] Length = 352 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 96/331 (29%), Positives = 165/331 (49%), Gaps = 20/331 (6%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++N LKY W + Y A NN W+P E+ + D+ K L E+ R L F Sbjct: 34 TNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDI---KDYRKLDQHEKRAFDRILSF 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 +S+ N+ + +++ E L Q ++E++HS ++ YI+ ++ E + Sbjct: 91 LTYLDSIQTANLP-NLQTYVTANEINLCLSIQTYQESIHSQSYSYILDTICSPEERTRIL 149 Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 +++E + + + QY + L D + +F++ L Y++ EG++FY+GF Sbjct: 150 YLWKEDDHLLRRNEFIGEQYNEFL--------VDDNEFKFVRALIANYIL-EGIYFYSGF 200 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 + +LGR KM G ++ +YI RDE+ HL +IN +K E P L+T E R ML Sbjct: 201 SFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKERPDLFTPEATIVYRDML 260 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP--FPW 322 E EI + + GL+ E Y++++ N R +G +PLF+ YTE P W Sbjct: 261 KEGVRQEIEWGKYAIGDNIAGLSTTMIEDYIKYLGNLRAKGLGFDPLFEGYTEIPQSMKW 320 Query: 323 MSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 + E D + K +FFE +VT Y + + ++ D Sbjct: 321 VDEYSDPNRVKTDFFEAKVTAYSKSSIIEDD 351 >gi|226528734|ref|NP_001150842.1| ribonucleoside-diphosphate reductase small chain [Zea mays] gi|195642302|gb|ACG40619.1| ribonucleoside-diphosphate reductase small chain [Zea mays] Length = 339 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 97/349 (27%), Positives = 157/349 (44%), Gaps = 36/349 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A T L P A E +L SD + P+++ WE Y A + W EV + Sbjct: 3 AAPTLLPPCDAEEP--------LLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVGL 54 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D W L+ DER I L FFA+S+ +V N+ + E R + Q Sbjct: 55 SADARHWD--EALSPDERHFISHVLAFFAASDGIVLENLASRFMTDVQVAEARAFYGFQI 112 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS + ++ + D E LF VP++ KA+WA+++ Sbjct: 113 AIENIHSEMYSLLLETYIRDHVEKDRLFRAIDTVPAVRRKADWAMRWI------------ 160 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 D + F + + F V EG++F F I L + M G+ + I RDE LH +F Sbjct: 161 -DGGERFAERIVAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 218 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + ++ K + + R ++ +A +E + + +P VG+N QY++F Sbjct: 219 CLLYELLR-------NKLDEARVREIVADAVDIEREFVCDALPVALVGMNGDLMSQYIEF 271 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +A+R +G + ++ T NPF WM E+I L + NFFE RV +YQ+ + Sbjct: 272 VADRLLMALGCKKMYNVT-NPFDWM-ELISLMGKTNFFEKRVGDYQKAS 318 >gi|154174558|ref|YP_001409201.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter curvus 525.92] gi|112803525|gb|EAU00869.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter curvus 525.92] Length = 340 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/332 (28%), Positives = 162/332 (48%), Gaps = 13/332 (3%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 N+ D+R+ N + KY WA + + N W P EV DD+ + LTD Sbjct: 14 NLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDVRDYAY--NLTD 71 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ M S +S NN+ I +++ PE L RQA+EEA HS ++ ++ Sbjct: 72 AEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEEANHSKSYAVMVE 131 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 ++ + ++ M + + K ++ +SS + D++ L + V + Sbjct: 132 AICDNTDLIYEMEKHDEVLREKNDY-------ISSVYEELAGEVTDEKLLLAM-VANQIL 183 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E L+T E Sbjct: 184 EGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRAERSDLFTPE 243 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++K M +A LEI + +G E+Y+ ++ ++R IGL+ + Sbjct: 244 MEEKIYDMFEKAGNLEIKWGRYITQNQIMGFTDDIIEEYIHYLVDQRLVAIGLKRKYN-A 302 Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 ++P W+ + +K NFFE++VT Y +G+ Sbjct: 303 KHPIKWVDDFAKFNDQKSNFFESKVTNYSKGS 334 >gi|281204152|gb|EFA78348.1| ribonucleotide reductase-related protein [Polysphondylium pallidum PN500] Length = 323 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/323 (28%), Positives = 150/323 (46%), Gaps = 28/323 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L P+K+ W+ Y A + W E+ + DL W+ K L D+ER I Sbjct: 7 ILKENKDRFVLFPIKHQDVWKFYKKAEASFWTAEEIDLAPDLRDWQDK--LNDNERYFIS 64 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + + Sbjct: 65 NVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAMENIHSETYSLLIDTYIQNPA 124 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P + KANWAL++ +S F + L F V EG++ Sbjct: 125 EKTKLFNAIETIPCVQKKANWALKWISNSTS-------------FAERLVAFAAV-EGIF 170 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + N M G+ ++I RDE LH F + ++ L K + Sbjct: 171 FSGSFCSIFWLKKRNLMSGLCSSNEFISRDEGLHCQFACLLYSK-------LVNKLDAKT 223 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 +++ +A E + +++P +G+N +Y++F+A+ +G + ++ T NPF Sbjct: 224 IESIIRDAVDCEKEFITQSLPVDLIGMNNRLMSEYIEFVADHLIVALGYKKIYN-TANPF 282 Query: 321 PWMSEVIDLKKEKNFFETRVTEY 343 WM E+I + NFFE R T Y Sbjct: 283 DWM-ELISIDTRTNFFEHRNTSY 304 >gi|50949848|emb|CAH10473.1| hypothetical protein [Homo sapiens] Length = 297 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 28/305 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V Sbjct: 2 YKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + PE R + Q E VHS + +I + D + LFN +P + KA+WA Sbjct: 59 QEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWA 118 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L++ S T G + V + EG++F FA I L + M G+ Sbjct: 119 LRWIADRKS---TFGER----------VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTF 165 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I RDE LH +F + +L K +++ R ++ +A +E + E +P Sbjct: 166 SNELISRDEGLHCDFACLMFQ-------YLVNKPPEERVREIIVDAVKIEQEFLTEALPV 218 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 G +G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV+E Sbjct: 219 GLIGMNCILMKQYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSE 276 Query: 343 YQQGA 347 YQ+ A Sbjct: 277 YQRFA 281 >gi|301117384|ref|XP_002906420.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] gi|262107769|gb|EEY65821.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] Length = 379 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 86/317 (27%), Positives = 155/317 (48%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++ W+ Y A + W E+ + DL W + LTD+ER IK L FFA+S+ Sbjct: 72 LFPIQEHEVWQMYKKAEASFWTAEELDLVHDLKDW---SKLTDNERHFIKHVLAFFAASD 128 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V N+ + + PE R + Q E +HS + +I + +++ L Sbjct: 129 GIVNENLAMNFSNEVQVPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAIEKDHLLRAIE 188 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P +T KA+WA+++ S + + L F V EG++F F I Sbjct: 189 TIPCVTKKAHWAIKWCDPRVS------------SYPERLLAFAAV-EGIFFSGSFCSIFW 235 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G++ + I RDE +H +F + +++ + P E + + T+ HE Sbjct: 236 LKKRGLMPGLSFSNELISRDEGMHTDFACLLYSKLVTKLPESRVHEIVRDAVTIEHE--- 292 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 + +++P +G+N+ QY++F+A+R + +G+ ++ + +NPF WM ++I L+ Sbjct: 293 ----FVRDSLPVELIGMNSGLMCQYIEFVADRLLYSLGVSKIY-HAKNPFDWM-DMISLQ 346 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EY + Sbjct: 347 GKTNFFEKRVGEYSKAG 363 >gi|226294144|gb|EEH49564.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides brasiliensis Pb18] Length = 325 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 27/308 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W+ Y A + W EV + DL W N L DDER I L FFA+S+ +V N+V Sbjct: 12 WQMYKKAEASFWTAEEVDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVE 69 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159 + PE R + Q E +HS T+ +I + + + LF+ +P I KA Sbjct: 70 RFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKA 129 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 +WA+++ + D + F Q L F V EG++F FA I L + M G Sbjct: 130 DWAIRWIE------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPG 176 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + + I RDE LH +F + + ++ H + E QK ++ EA +E + + Sbjct: 177 LTFSNELISRDEGLHTDFACLLFSHLR----HRPSPEAVQK---IITEAVAIEQEFLTDA 229 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 +P +G+NA QY++F+A+R +G + ++ T NPF +M I L + NFFE R Sbjct: 230 LPCALLGMNAKLMCQYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLTGKTNFFEKR 287 Query: 340 VTEYQQGA 347 V +YQ+ Sbjct: 288 VGDYQKAG 295 >gi|303272255|ref|XP_003055489.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463463|gb|EEH60741.1| predicted protein [Micromonas pusilla CCMP1545] Length = 322 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 97/327 (29%), Positives = 158/327 (48%), Gaps = 29/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 ML D L P+K+ W+ Y A + W E+ + DL W LT+ E+ I Sbjct: 1 MLQDNEDRFSLFPVKHVEVWKMYKQAVASFWNAEEIDLSTDLRDW---GNLTESEQHFIS 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ L + + PE R + Q E +HS T+ ++ + D Sbjct: 58 HVLAFFAASDGIVLENLGLRFLKDVQMPEARAFYGFQLAMENIHSETYGLLLETYIKDSV 117 Query: 144 ELFNMYRE---VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + ++ R VP++ KA WAL++ Q+ + F + L F V EG++ Sbjct: 118 QRKHLMRAIHTVPTVGRKAQWALRWIQS-------------SECFAERLIAFACV-EGIF 163 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + +K H E Q+ Sbjct: 164 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSMLK----HPLEPERLQE 219 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ +A +E + + + VG+NA +Y++F+A+R Q+G++ ++ T NPF Sbjct: 220 ---IVKDAVEIEKEFVCDALSCALVGMNADLMSEYIEFVADRLLVQLGVDKVWN-TPNPF 275 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E I L+ + NFFE RV EYQ+ Sbjct: 276 DWM-ESISLQGKTNFFERRVGEYQRNG 301 >gi|118474076|ref|YP_891239.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter fetus subsp. fetus 82-40] gi|118413302|gb|ABK81722.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter fetus subsp. fetus 82-40] Length = 340 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 89/311 (28%), Positives = 152/311 (48%), Gaps = 12/311 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV DD+ + LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTDDVRDYAC--NLTTAEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + + Sbjct: 93 NNLADNINPYITAPEINAILARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKYDDVLRK 152 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ + L+ D++ L + V + EG++FY+GF I +L RA KM Sbjct: 153 KNDYISSVYEELAGEV-------TDEKLLLAM-VANQILEGVYFYSGFTAIYALARAGKM 204 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 +G A+ ++I RDE HL ++IN ++ E P L+T E + K M +A LEI + Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFTSEVEAKIYEMFKKAGDLEIEWGK 264 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336 +G E+Y+ ++ + R IGL+ L+ ++P W+ + +K NFF Sbjct: 265 YITGNQIMGFTDDIIEEYIHYLVDDRLTSIGLKKLYN-AKHPIKWVDDFAKFNDQKSNFF 323 Query: 337 ETRVTEYQQGA 347 E++VT Y +G+ Sbjct: 324 ESKVTNYSKGS 334 >gi|221060582|ref|XP_002260936.1| ribonucleotide reductase small subunit [Plasmodium knowlesi strain H] gi|193811010|emb|CAQ42908.1| ribonucleotide reductase small subunit,putative [Plasmodium knowlesi strain H] Length = 349 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 89/330 (26%), Positives = 161/330 (48%), Gaps = 29/330 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++L+ +D L P+ Y W+ Y A + W E+ + DL K L ++E+ Sbjct: 30 NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL---KDFEKLNENEKH 86 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 87 FIKHVLAFFAASDGIVLENLASKFLRQVQITEAKKFYSFQIAVENIHSETYSLLIDNYIK 146 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 DE E LF+ +P++ KA WA ++ +S + V E Sbjct: 147 DEKERMNLFHAIENIPAVKNKALWAAKWINDTNS--------------FAERIVANACVE 192 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G+ F F I + NK+ G+ + I RDE LH +F + + ++ + P Sbjct: 193 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP------- 245 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G +F + + Sbjct: 246 EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSRKIF-HAK 304 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 NPF WM ++I L+ + NFFE RV +YQ+ Sbjct: 305 NPFNWM-DLISLQGKTNFFEKRVADYQKSG 333 >gi|188588149|ref|YP_001919720.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium botulinum E3 str. Alaska E43] gi|251778737|ref|ZP_04821657.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498430|gb|ACD51566.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum E3 str. Alaska E43] gi|243083052|gb|EES48942.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 344 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 96/335 (28%), Positives = 173/335 (51%), Gaps = 21/335 (6%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KR++N + ++N +KY WA + Y NN W+P E+ + DL +K L +ER Sbjct: 20 KRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLKDYKK---LLPEERT 76 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +S+ N+ I +++ E L Q+F+EAVHS ++ Y++ S+ Sbjct: 77 AYDKILSFLIFLDSIQTANLS-NINSYITASEINLCLTIQSFQEAVHSQSYSYMLDSICS 135 Query: 141 DE--GELFNMYREVPSITAKANWALQ--YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 E E+ +++ I K N + Y + +++P+ + ++ L Y++ Sbjct: 136 PEERNEILYQWKD-DEILLKRNKFIGDLYNEFINNPN--------EYNLIKTLMANYIL- 185 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++ ENP +T + Sbjct: 186 EGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQSENPESFTTD 245 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315 + + + M+ EI + H + G+N E Y++++ N+R +IGL LF+ + Sbjct: 246 LKNELKEMMRIGVENEILWGHYVIGDKIQGINKKLIEDYIKYLGNKRLKEIGLGMLFEGF 305 Query: 316 TENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 ENP W+ V + K +FFE + T Y + + L Sbjct: 306 EENPATWVDVVANSNSVKTDFFEAKSTAYAKVSTL 340 >gi|70936723|ref|XP_739266.1| ribonucleotide reductase small subunit [Plasmodium chabaudi chabaudi] gi|56516136|emb|CAH80811.1| ribonucleotide reductase small subunit, putative [Plasmodium chabaudi chabaudi] Length = 349 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 90/330 (27%), Positives = 159/330 (48%), Gaps = 29/330 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++LN S L P+ Y W Y A + W E+ + DL K L +E+ Sbjct: 30 NEKILNKESSRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDL---KDFEKLNVNEKH 86 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 87 FIKHVLAFFAASDGIVLENLASKFLREVQIIEAKKFYAFQIAVENIHSETYSLLIDNYIR 146 Query: 141 DEGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 DE E N++ +P+I KA WA ++ +S + V E Sbjct: 147 DEKERLNLFHAIENIPAIKNKALWAAKWINDTNS--------------FAERIVANACVE 192 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G+ F F I + NK+ G+ + I RDE LH +F + + ++ + P Sbjct: 193 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP------- 245 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G +F +++ Sbjct: 246 EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HSK 304 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 NPF WM ++I L+ + NFFE RV +YQ+ Sbjct: 305 NPFSWM-DLISLQGKTNFFEKRVADYQKSG 333 >gi|170089003|ref|XP_001875724.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82] gi|164648984|gb|EDR13226.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82] Length = 422 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 152/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + DL W N + D+ER I L FFA+S+ Sbjct: 98 LFPIQYNEIWQMYKKAEASFWTAEEMDLSKDLHDWN--NRMNDNERHFISHVLAFFAASD 155 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + E R + Q E +HS T+ +I S D + LF+ Sbjct: 156 GIVNENLLERFSNEVQAAEARCFYGFQIMMENIHSETYSLLIDSYIKDPAQREYLFDAIE 215 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WAL++ D + F + L F V EG++F FA I Sbjct: 216 TIPCIKRKAEWALKWIS------------DQESTFAERLVAFAAV-EGIFFSGSFASIFW 262 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + + M G+ + I RDE +H +F + + +K PH + + ++ EA Sbjct: 263 MKKRGLMPGLTFSNELISRDEGMHTDFACLLFSHLK-RRPH------PEVVKHIIVEAVK 315 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G E + T NPF +M ++I L+ Sbjct: 316 IEQEFLTDALPVKLIGMNADLMCQYIEFVADRLLVSLGNEKHYNKT-NPFDFM-DMISLQ 373 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++Y + Sbjct: 374 GKTNFFEKRVSDYSKAG 390 >gi|195172750|ref|XP_002027159.1| GL20023 [Drosophila persimilis] gi|198459455|ref|XP_001361381.2| GA21447 [Drosophila pseudoobscura pseudoobscura] gi|194112972|gb|EDW35015.1| GL20023 [Drosophila persimilis] gi|198136695|gb|EAL25959.2| GA21447 [Drosophila pseudoobscura pseudoobscura] Length = 391 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 155/315 (49%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D W LTD+ER I L FFA+S+ Sbjct: 84 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDATDWAR---LTDNERYFISHVLAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + + E LFN Sbjct: 141 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIREPQERDYLFNAIE 200 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P++ KA+WA+ + + S+ F + + F V EG++F FA I Sbjct: 201 TMPAVKRKADWAMSWISSKSA------------NFAERIIAFAAV-EGIFFSGSFASIFW 247 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + + HL + +++ ++ +A Sbjct: 248 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMYH-------HLVQRPKRERIIEIIRDAVE 300 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N QY++F+A+R ++G+ ++ T+NPF +M E+I L Sbjct: 301 IEQEFLTEALPVNLIGMNCVLMSQYIEFVADRLLGELGVGKIYN-TKNPFNFM-EMISLD 358 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 359 GKTNFFEKKVAEYQR 373 >gi|255080138|ref|XP_002503649.1| predicted protein [Micromonas sp. RCC299] gi|226518916|gb|ACO64907.1| predicted protein [Micromonas sp. RCC299] Length = 324 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 96/326 (29%), Positives = 156/326 (47%), Gaps = 29/326 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 ML D L P+K W+ Y A + W E+ + D W + L D+E+ I Sbjct: 1 MLQDNEDRFCLFPIKEHAVWKMYKQAEASFWSAEEIDLSMDYKDWVT---LNDNEQHFIS 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ L + + PE R + Q E +HS T+ +I + D Sbjct: 58 HVLAFFAASDGIVLENLGLRFMKDVQLPEARAFYAFQLAIENIHSETYGLLIDTYVKDSV 117 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + LF VP++ KA WAL++ Q+ E + V + EG++ Sbjct: 118 KKRHLFRAIHNVPTVARKAQWALKWIQS--------------SECFAERLVAFACVEGIF 163 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + +K +P L Q+ Sbjct: 164 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSMLK--HP-LDPARLQE- 219 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ +A +E + + + VG+NA +Y++F+A+R Q+G+E ++ T NPF Sbjct: 220 ---IVKDAVDIEKEFVCDALSCALVGMNADLMSEYIEFVADRLMTQLGVEKVWN-TPNPF 275 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346 WM E+I L+ + NFFE RV +YQ+ Sbjct: 276 EWM-EMISLQGKANFFEHRVDQYQKA 300 >gi|320536436|ref|ZP_08036471.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema phagedenis F0421] gi|320146705|gb|EFW38286.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema phagedenis F0421] Length = 363 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 96/341 (28%), Positives = 169/341 (49%), Gaps = 21/341 (6%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 V + +RM+ + ++N LKY W E Y A NN W+P E+ M D+ ++ L+ Sbjct: 32 VELHKRRMIGGNTTNLNDFNNLKYPWVSEWYRQAMNNFWIPEEINMNTDVQDYRK---LS 88 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + L F +S+ N+ + ++++ E L QAF+EAVHS ++ Y++ Sbjct: 89 KAEKTAYDKILSFLIFLDSIQTANLP-NVGQYITANEVNLCLTIQAFQEAVHSQSYSYML 147 Query: 136 TSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVF 192 ++ E ++ +++ + A+ + Y + ++ S K A V Sbjct: 148 DTICSPEERNDILYQWKDDEHLLARNKFIGNLYNEFVNDKSALALVKVA---------VA 198 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++FY+GF +LGR NKM G ++ +YI RDE+ HL +I +++ E P L Sbjct: 199 NYILEGVYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQELQKEEPQL 258 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 +T E + R M+ E EI + H + GLN Y+Q++ N RC +G EPL Sbjct: 259 FTPENIEMFRAMIKEGCEQEIKWGHYVIGDDIPGLNKQMITDYIQYLGNLRCENLGFEPL 318 Query: 313 FK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 ++ + E P W+S+ + K +FFE + T Y + + + Sbjct: 319 YEGHREEPASMSWVSQYSNANLIKTDFFEAKSTAYAKSSAM 359 >gi|326386063|ref|ZP_08207687.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium nitrogenifigens DSM 19370] gi|326209288|gb|EGD60081.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium nitrogenifigens DSM 19370] Length = 351 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 86/313 (27%), Positives = 156/313 (49%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HWMP EVP+ +D W K ++D ER ++ + FF ++ Sbjct: 12 PFEYPWAYEFWKRQQQVHWMPEEVPLGEDCRDWAQK--ISDHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + R E + L + E +H + +++ ++G+ E E + M+ E + Sbjct: 70 VQDCYHEKYGRVFKPTEVKMMLAAFSNMETIHIAAYSHLLDTIGMPESE-YGMFLEYEEM 128 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 AK + Y Q D+D++ + L +F EG+ + FA +++ R N Sbjct: 129 KAKHD----YMQLFGV--------DSDEDIARTLAMFGGFTEGLQLFASFAMLMNFPRFN 176 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDE+LH GI + Q ++ TK ++ + LE A+ Sbjct: 177 KMKGMGQIVSWSVRDETLHCE-GITRLFQAFVQERDCMTKAVREDIIDCCQKTVRLEDAF 235 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 +G V G++A ++Y+++IA+ R Q+G +P++ E+P PW++ +++ + N Sbjct: 236 IDLAFEQGPVPGMSAKEIKRYIRYIADWRLGQLGFQPIYMIEEHPLPWLTPLLNGVEHAN 295 Query: 335 FFETRVTEYQQGA 347 FFETR TEY + A Sbjct: 296 FFETRATEYSKAA 308 >gi|126303832|ref|XP_001381111.1| PREDICTED: similar to hCG23833, [Monodelphis domestica] Length = 493 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 98/347 (28%), Positives = 163/347 (46%), Gaps = 36/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A N SP + E + + +R + + P++Y W Y A + W EV + Sbjct: 162 APNEPASPSKEDEPLLRENPRRFV--------IFPIEYHDIWHMYKKAEASFWTAEEVDL 213 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W++ L +E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 214 SKDIQHWET---LKSEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQI 270 Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS + +I + D E LFN +P + KA+WAL++ Sbjct: 271 AMENIHSEMYSLLIDTYIKDPKEREFLFNAIETLPCVKKKADWALRWI------------ 318 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 D + + + + F V EG++F FA I L + M G+ + I RDE LH +F Sbjct: 319 GDNEATYGERVVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 377 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + HL K ++K + ++ A +E + E +P +G+N +QY++F Sbjct: 378 CLMFK-------HLVHKPSEEKVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEF 430 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +A+R ++G +F+ ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 431 VADRLMLELGFSKIFR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 475 >gi|269105083|ref|ZP_06157778.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae CIP 102761] gi|268160718|gb|EEZ39216.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae CIP 102761] Length = 310 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 95/327 (29%), Positives = 155/327 (47%), Gaps = 36/327 (11%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y + W E+ DLA LT+ E+ I+ L FFA SE Sbjct: 9 LFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLA---DLAKLTEGEKHFIRHVLAFFAQSE 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGE-LFNMYR 150 ++ N++ Y + E R +L QAF E +H+ T+ + + ++E E LFN Sbjct: 66 GMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPAVEERERLFNAIE 125 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP++ KA W +++ + D+ L F +V EG++F F I Sbjct: 126 NVPTVKRKAEWVMKWISS-------------DKPLTMRLIAFGLV-EGLFFAGSFCAIYY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFG---IDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + + G+A I RDE LH +F + Q K+ QQ+ + E Sbjct: 172 FRKRSLLAGLAASNDLIARDEGLHFSFSALLFKTLGQGKVT---------QQEFEEICRE 222 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A +E + E +P +G+NA QY++ A+ G +P+F Y +NPF +M ++ Sbjct: 223 AVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIAGLFGFDPIF-YAKNPFDYM-RLL 280 Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352 D++ + NFFE RVTEY+ Q +L +D Sbjct: 281 DMEGKTNFFEKRVTEYKRPQDRQLSFD 307 >gi|295670491|ref|XP_002795793.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides brasiliensis Pb01] gi|226284878|gb|EEH40444.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides brasiliensis Pb01] Length = 325 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 94/308 (30%), Positives = 149/308 (48%), Gaps = 27/308 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W+ Y A + W E+ + DL W N L DDER I L FFA+S+ +V N+V Sbjct: 12 WQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVE 69 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159 + PE R + Q E +HS T+ +I + + + LF+ +P I KA Sbjct: 70 RFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKA 129 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 +WA+++ + D + F Q L F V EG++F FA I L + M G Sbjct: 130 DWAIRWIE------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPG 176 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + + I RDE LH +F + + ++ H + E QK ++ EA +E + + Sbjct: 177 LTFSNELISRDEGLHTDFACLLFSHLR----HRPSPEAVQK---IITEAVAIEQEFLTDA 229 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 +P +G+NA QY++F+A+R +G + ++ T NPF +M I L + NFFE R Sbjct: 230 LPCALLGMNAKLMCQYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLTGKTNFFEKR 287 Query: 340 VTEYQQGA 347 V +YQ+ Sbjct: 288 VGDYQKAG 295 >gi|4894211|gb|AAD32302.1| ribonucleotide reductase small subunit [Glycine max] Length = 339 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 93/338 (27%), Positives = 157/338 (46%), Gaps = 29/338 (8%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G + + + +L +S + P++Y WE Y A + W EV + D+ W++ Sbjct: 8 GVDKARDEQEPILMEQSQRFCMFPIRYKQIWEMYKKAEASFWTAEEVDLSYDVQHWET-- 65 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ E+ I L FFA+S+ +V N+ + PE R + Q E +HS + Sbjct: 66 -LSVSEKHFITHVLAFFAASDGIVLENLAARFLSDVQIPEARAFYGFQIAMENIHSEMYS 124 Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 ++ + D E LFN +P + KA WAL + SS SF + Sbjct: 125 LLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWIH--SSTSFA------------ER 170 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 V + EG++F F I L + M G+ + I RDE LH +F + + ++ Sbjct: 171 LVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR--K 228 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 P + + ++HEA +E + + +P +G+N+ QY++F+A+R +G Sbjct: 229 PLI-----SDQVHKLVHEAVEIETEFVCDALPCALIGMNSVLMSQYIKFVADRLLVALGY 283 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 + + ENPF WM E I L+ + NFFE RV +YQ+ + Sbjct: 284 QRKYN-VENPFDWM-EFISLQGKANFFERRVGDYQKAS 319 >gi|325953830|ref|YP_004237490.1| ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922] gi|323436448|gb|ADX66912.1| Ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922] Length = 323 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 91/318 (28%), Positives = 155/318 (48%), Gaps = 30/318 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++ W+ Y A + W EV + D+ W++K L DER I L FFA+S+ Sbjct: 15 IFPIQHDDIWQFYKKAEASFWTAEEVDLSSDMNDWQNK--LNKDERYFISHVLAFFAASD 72 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + + PE R + Q E +HS + +I + D E L Sbjct: 73 GIVNENLAVNFVQEVQYPEARFFYGFQIMIENIHSEMYSLLIDTYIKDPKEKDHLLRAIE 132 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL++ ++ F + L F V EG++F F I Sbjct: 133 TIPCVGKKADWALEWIES--------------DNFAERLIAFAAV-EGIFFSGSFCSIFW 177 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEAT 269 L + M G+ + I RDE LH +F + +N +K + P ++ + ++ +A Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYVNHLKNKLP-------EETVQKIIADAV 230 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E + E +P +G+NA QY++F+A+R +G + ++ T NPF +M E+I L Sbjct: 231 EVEKEFVTEALPVRLIGMNAELMCQYIEFVADRLLDALGCKKVWNAT-NPFDFM-ELISL 288 Query: 330 KKEKNFFETRVTEYQQGA 347 + + NFFE RV EYQ+ Sbjct: 289 QGKTNFFERRVGEYQKSG 306 >gi|262263187|dbj|BAI48096.1| ribonucleotide reductase M2 [Sus scrofa] Length = 355 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 95/330 (28%), Positives = 158/330 (47%), Gaps = 28/330 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L + Sbjct: 49 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWET---LKPE 105 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 106 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 165 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + V + Sbjct: 166 YIKDSKEREFLFNAIETMPCVKKKADWALRWI----------GDKEAT---YGERVVAFA 212 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 213 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLH 265 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R ++G +F+ Sbjct: 266 KPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVFR 325 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 ENPF +M E I L+ + NFFE RV E + Sbjct: 326 -VENPFDFM-ENISLEGKTNFFEKRVGEIR 353 >gi|255323570|ref|ZP_05364700.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter showae RM3277] gi|255299284|gb|EET78571.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter showae RM3277] Length = 340 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 94/332 (28%), Positives = 159/332 (47%), Gaps = 13/332 (3%) Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 N+ D+R+ N + KY WA + + N W P EV DD+ + LT Sbjct: 14 NLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDVRDYAY--NLTQ 71 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ M S +S NN+ I +++ PE L RQA+EEA HS ++ ++ Sbjct: 72 AEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEEANHSKSYAVMVE 131 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 ++ + ++ M + + K ++ +SS + D++ L + V + Sbjct: 132 AICDNTDLIYEMEKHDEVLREKNDY-------ISSVYEELAGEVTDEKLLLAM-VANQIL 183 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E P L+T E Sbjct: 184 EGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRTERPDLFTPE 243 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + K M A LEI + +G EQY++++ ++R IGL+ + Sbjct: 244 TEAKIYDMFERAGELEIKWGKYITQNQIMGFTDDIIEQYIRYLIDQRLVAIGLKRRYN-V 302 Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 +P W+ + +K NFFE +VT Y +G+ Sbjct: 303 PHPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS 334 >gi|73974200|ref|XP_858061.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible) isoform 3 [Canis familiaris] Length = 338 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 99/337 (29%), Positives = 154/337 (45%), Gaps = 41/337 (12%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E V D++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 24 ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 81 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D + LFN +P + KA+WAL++ + S T G + Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIEDRKS---TFGER----------V 187 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------- 240 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 +L K +++ R ++ A +E + E +P G +G+N +QY++F+ Sbjct: 241 YLVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVFQ--------- 291 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ENPF +M E I L+ + NFFE RV EYQ+ A Sbjct: 292 -----AENPFDFM-ENISLEGKTNFFEKRVAEYQRFA 322 >gi|195027582|ref|XP_001986661.1| GH20400 [Drosophila grimshawi] gi|193902661|gb|EDW01528.1| GH20400 [Drosophila grimshawi] Length = 393 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 155/315 (49%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W LTD+ER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDMTDWVR---LTDNERHFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D + LFN Sbjct: 143 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQRDYLFNAIE 202 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P++ KA+WAL + +SS + G + + + EG++F FA I Sbjct: 203 TMPAVKRKADWALSW---ISSKAANFGER----------IIAFAAVEGIFFSGSFASIFW 249 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + +++ ++ +A Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVMMFQ-------HLVQRPSRERIIEIVSDAVT 302 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N +Y++F+A+R ++G+ ++ T+NPF +M E+I L Sbjct: 303 IEQEFLTDALPVNLIGMNCALMSEYIEFVADRLLVELGVGKIYN-TKNPFTFM-EMISLD 360 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 361 GKTNFFEKKVGEYQR 375 >gi|194755279|ref|XP_001959919.1| GF11796 [Drosophila ananassae] gi|190621217|gb|EDV36741.1| GF11796 [Drosophila ananassae] Length = 393 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 93/315 (29%), Positives = 155/315 (49%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W + L DDER I L FFA+S+ Sbjct: 86 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---HRLKDDERHFISHVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D + LFN Sbjct: 143 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIE 202 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P++ KA+WAL + +SS S G + + + EG++F FA I Sbjct: 203 TMPAVKRKADWALAW---ISSKSANFGER----------IIAFAAVEGIFFSGSFASIFW 249 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL K +++ ++ +A Sbjct: 250 LKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ-------HLVQKPRRERIIEIIRDAVD 302 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R ++G+ ++ T+NPF +M E+I L Sbjct: 303 IEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISLD 360 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 361 GKTNFFEKKVGEYQR 375 >gi|187607401|ref|NP_001119973.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus (Silurana) tropicalis] gi|165971068|gb|AAI58191.1| LOC100144925 protein [Xenopus (Silurana) tropicalis] Length = 346 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 100/341 (29%), Positives = 156/341 (45%), Gaps = 39/341 (11%) Query: 21 DKRMLNARSDVNQ-----------LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 DK + N SD + + P+ Y W+ Y A + W EV + DL W+ Sbjct: 15 DKNLTNGHSDEEEPFLRKNPQRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKDLVHWE 74 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L +ER I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 75 K---LKPEERNFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSE 131 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I + D LFN +P + KA WAL++ D F Sbjct: 132 MYSLLIETYIKDPRRREFLFNAIETMPCVRKKAQWALRWIS------------DRKASFG 179 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + F V EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 180 ERVVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFH--- 235 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 +L K +++ ++ A +E + E +P +G+N + Y++F+A+R + Sbjct: 236 ----YLVKKPTEERVTEIIVNAVRIEQEFLTEALPVSLIGMNCTLMKTYIEFVADRLLVE 291 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +G FK ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 292 LGCSKAFK-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 330 >gi|157164305|ref|YP_001467763.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter concisus 13826] gi|112800348|gb|EAT97692.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter concisus 13826] Length = 340 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 94/332 (28%), Positives = 160/332 (48%), Gaps = 13/332 (3%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 N+ D+R+ N + KY WA + + N W P EV DD+ + LT+ Sbjct: 14 NLTDRRVFNGNPHGILNFTKAKYEWALKLWDLMEANTWFPKEVDTTDDVRDYAY--NLTE 71 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ M S +S NN+ I +++ PE L RQA+EEA HS ++ ++ Sbjct: 72 AEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEEANHSKSYAVMVE 131 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 ++ + ++ M + + K ++ +SS + D++ L + V + Sbjct: 132 AICDNTDLIYEMEKHDDVLREKNDY-------ISSVYEELAGEVTDEKLLLAM-VANQIL 183 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E P L+T E Sbjct: 184 EGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFTPE 243 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + K M +A LEI + +G EQY+ ++ ++R IGL+ + Sbjct: 244 TEAKIYDMFEKAGNLEIKWGKYITQNQIMGFTDDIIEQYIHYLIDQRLVAIGLKRKYN-V 302 Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 +P W+ + +K NFFE +VT Y +G+ Sbjct: 303 AHPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS 334 >gi|323143005|ref|ZP_08077711.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas hippei YIT 12066] gi|322417199|gb|EFY07827.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas hippei YIT 12066] Length = 331 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 91/339 (26%), Positives = 160/339 (47%), Gaps = 28/339 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K N+ +KR L +S + P Y WA+E ++ + HW+ TEVPM +D+ WK + L Sbjct: 2 KVKNMTEKRNLLTQSR-DYYKPFVYPWAYEAFMQSEQMHWLWTEVPMVEDVKDWKMR--L 58 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D+ER + + FF + V++ V PE R L A EAVH + ++ Sbjct: 59 NDNERDFLTKVFRFFTQGDIDVSSAYVHTYLPAFPQPEIRMMLSSFAAREAVHIAAYSHL 118 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK-DADQEFLQDLFVFY 193 I ++G+ + +Y E LQY + F G + + ++ + F Sbjct: 119 IETIGMPDA----IYNEF----------LQYEAMAAKHEFFHGLRLNQNENIAAKMAAFS 164 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EGM ++ F +L+ R M G+ + + + DE+LH I + + +NP LW Sbjct: 165 AFTEGMQLFSSFVMLLNFTRNGTMRGMGQIIAWSINDETLHTESMIKLFREYIEQNPQLW 224 Query: 254 TKEFQQKSRTMLH-----EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 + + ++ E + +++A+ M K L ++Y++FIA+RR +G Sbjct: 225 NDDLKSTIYSIAEKMVELEDSFIDLAFGVNQMQK----LAKEDVKKYIRFIADRRLSAMG 280 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++ +F +NP PW+ ++ + NFFE RV +Y +GA Sbjct: 281 MKAIFNEKKNPLPWVDAMLGV-THTNFFENRVVDYAKGA 318 >gi|289742419|gb|ADD19957.1| ribonucleotide reductase beta subunit [Glossina morsitans morsitans] Length = 396 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 153/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W N L+D ER I L FFA+S+ Sbjct: 89 IFPIQYPEIWKMYKKAEASFWTAEEVDLSKDMDDW---NRLSDGERHFISHVLAFFAASD 145 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + +DE E LFN Sbjct: 146 GIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSLLIETYIMDEKEREYLFNAIE 205 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA WAL + +SS S G + + + EG++F FA I Sbjct: 206 TMPLVKKKAEWALAW---ISSHSANFGER----------IIAFAAVEGIFFSGSFASIFW 252 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH F + + HL K +++ ++ +A Sbjct: 253 LKKRGIMPGLTFSNEMISRDEGLHCEFAVLMFK-------HLIQKPSKERILEIITDAVK 305 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N+ S +Y++++A+R ++ + + ENPF +M++ I + Sbjct: 306 IEKEFLTEALPVDLIGMNSESMCKYIEYVADRLLLELDVGKYY-LAENPFEFMNK-ISID 363 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 364 GKTNFFEKRVGEYQK 378 >gi|296809816|ref|XP_002845246.1| ribonucleotide reductase [Arthroderma otae CBS 113480] gi|238842634|gb|EEQ32296.1| ribonucleotide reductase [Arthroderma otae CBS 113480] Length = 405 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 148/317 (46%), Gaps = 30/317 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY E Y A + W E+ + D+ W N L DDER I L FFA+S+ Sbjct: 89 LFPIKYH---EMYKKAEASFWTAEEIDLSKDIHDWN--NRLNDDERFFISHVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E +HS T+ +I + ++ + LF Sbjct: 144 GIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEQKQRTYLFEAID 203 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q D D F Q L F V EG++F FA I Sbjct: 204 TIPCIRKKADWAIRWIQ------------DKDSTFAQRLVAFAAV-EGIFFSGSFASIFW 250 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ EA Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNYRPDPTAVEAIITEAVS 303 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G + + T NPF +M I L Sbjct: 304 IEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKFYNTT-NPFDFMDN-ISLA 361 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ Sbjct: 362 GKTNFFEKRVGDYQKAG 378 >gi|302833193|ref|XP_002948160.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f. nagariensis] gi|300266380|gb|EFJ50567.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f. nagariensis] Length = 354 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 100/335 (29%), Positives = 156/335 (46%), Gaps = 28/335 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L + L P++Y WE Y A + W EV DL + K L ++ER Sbjct: 24 DEAVLRENPNRFTLFPIRYPDLWEFYKRAVASFWTVEEVDFTGDLYDFDHK--LKEEERR 81 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E VHS + ++ Sbjct: 82 FIKYVLAFFAASDGIVMENLSARFMSEVQVPEARAFYGFQIAMENVHSEMYSVLLDHYVR 141 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E LFN + + ++ KA+WAL++ + +S F + L F V E Sbjct: 142 DPAERRQLFNAIQTIATVGKKADWALRWISSSNS-------------FAERLVAFACV-E 187 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G+ F F I L + M G++ I RDE LH +F + HL + Sbjct: 188 GIHFSGSFCAIFWLKKRLLMPGLSFSNCLISRDEGLHCDFACCLYG-------HLKNRLS 240 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +++ ++ EA LE + E + +G+NA QY++F+A+R +G + + T Sbjct: 241 RERVVKIVDEAVRLEDEFCTEALSCELLGMNADLMRQYIRFVADRLLVSLGYDKYYN-TV 299 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPF WM E+I L+ + NFFE RV EYQ+ + D Sbjct: 300 NPFDWM-EMISLQGKANFFERRVGEYQRACVMAGD 333 >gi|187903099|ref|YP_001883390.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca domestica salivary gland hypertrophy virus] gi|187384748|gb|ACD03521.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca domestica salivary gland hypertrophy virus] Length = 343 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 155/315 (49%), Gaps = 27/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W Y A + W EV + D+ W+ L+ E+ IK L FFA+S+ Sbjct: 29 LFPIEYEDIWRMYKKAEASFWTVEEVDLSKDMNDWER---LSSGEQHFIKHVLAFFAASD 85 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + + E R + Q E VHS + +I + + E LFN Sbjct: 86 GIVNENLLERFAQEVQVSEARCFYGFQIAMENVHSEMYSVLIDTYIRERAERERLFNAIE 145 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P++ KA+WA + + TT T F + L F VV EG++F FA I Sbjct: 146 TIPAVKRKADWAFNWITS------TTAT------FGERLLAFAVV-EGVFFSGSFAAIFW 192 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE +H +F + + + + P +++ ++ EA Sbjct: 193 LKKRGLMPGLTFSNELISRDEGMHCDFAVLLFKRYLVNRPS------EERVGEIVREAVT 246 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R +G++ ++ T+NPF +M ++I L Sbjct: 247 IEQEFLTDALPVSLIGMNCGLMSQYIEFVADRLLVDLGMKRIYN-TKNPFDFM-DMISLD 304 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV +YQ+ Sbjct: 305 GKTNFFEKRVGDYQR 319 >gi|15232077|ref|NP_189342.1| TSO2 (TSO meaning 'ugly' in Chinese); oxidoreductase/ ribonucleoside-diphosphate reductase/ transition metal ion binding [Arabidopsis thaliana] gi|75273949|sp|Q9LSD0|RIR2C_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain C; AltName: Full=Ribonucleoside-diphosphate reductase TSO2 subunit; AltName: Full=Ribonucleotide reductase small subunit C gi|9279629|dbj|BAB01087.1| ribonucleotide reductase [Arabidopsis thaliana] gi|17380726|gb|AAL36193.1| putative ribonucleotide reductase small subunit [Arabidopsis thaliana] gi|21436297|gb|AAM51287.1| putative ribonucleotide reductase small subunit [Arabidopsis thaliana] gi|332643740|gb|AEE77261.1| Ribonucleoside-diphosphate reductase small chain C [Arabidopsis thaliana] Length = 332 Score = 135 bits (340), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 151/327 (46%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+ Y WE Y A + W EV + D W+ N L D ER IK Sbjct: 9 LLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLNDGERHFIK 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E R + Q E +HS + ++ + D Sbjct: 67 HVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIKDNK 126 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF +P + KA WA+++ D Q F + + F V EG++ Sbjct: 127 ERDHLFRAIETIPCVAKKAQWAMKWI-------------DGSQTFAERIIAFACV-EGIF 172 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + +K + +++ Sbjct: 173 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLKTKLS-------EER 225 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++++ +A +E + + +P VG+N QY++F+A+R +G ++ T NPF Sbjct: 226 VKSIVCDAVEIEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVT-NPF 284 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV +YQ+ + Sbjct: 285 DWM-ELISLQGKTNFFEKRVGDYQKAS 310 >gi|297818266|ref|XP_002877016.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp. lyrata] gi|297322854|gb|EFH53275.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp. lyrata] Length = 329 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 151/327 (46%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+ Y WE Y A + W EV + D W+ N L D ER IK Sbjct: 6 LLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NNLNDGERHFIK 63 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E R + Q E +HS + ++ + D Sbjct: 64 HVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIKDNK 123 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF +P + KA WA+++ D Q F + + F V EG++ Sbjct: 124 ERDHLFRAIETIPCVAKKAQWAMKWI-------------DGSQTFAERIIAFACV-EGIF 169 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + +K + +++ Sbjct: 170 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLKTKLS-------EER 222 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++++ +A +E + + +P VG+N QY++F+A+R +G ++ T NPF Sbjct: 223 VKSIVCDAVEIEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVT-NPF 281 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV +YQ+ + Sbjct: 282 DWM-ELISLQGKTNFFEKRVGDYQKAS 307 >gi|145352915|ref|XP_001420779.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581014|gb|ABO99072.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 346 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 97/330 (29%), Positives = 156/330 (47%), Gaps = 29/330 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L P+K+ WE Y A + W EV + D W + L D+E+ I Sbjct: 29 LLRDNPDRFCLFPIKHAKVWEMYKKAEASFWTAEEVDLTYDYRDWIT---LNDNEQHFIS 85 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ + PE R + Q E +HS + ++ + D Sbjct: 86 HVLAFFAASDGIVLENLCSRFMTDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKDPK 145 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + +LF VP++ KA+WAL++ + D F + L F V EG++ Sbjct: 146 KKSDLFRAIHTVPTVAKKADWALKWIGS-------------DASFAERLVGFACV-EGIF 191 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + +ENP L K Q Sbjct: 192 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSM--LENP-LSEKVLHQ- 247 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ +A +E + + + VG+NA Y++F+A+R Q+G+ L+ NPF Sbjct: 248 ---LVGDAVTIEKEFVCDALSCSLVGMNANMMSTYIEFVADRLLLQLGVSKLYNAV-NPF 303 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 WM E+I L+ + NFFE RV +YQ+ ++ Sbjct: 304 DWM-ELISLQGKANFFEHRVDQYQKAGVMQ 332 >gi|327403795|ref|YP_004344633.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM 16823] gi|327319303|gb|AEA43795.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM 16823] Length = 324 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/317 (28%), Positives = 156/317 (49%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W Y A + W E+ + DL W++K L+DDER +K L FFA+S+ Sbjct: 17 LFPIQHEDIWSFYKKAEASFWTAEEIDLSPDLIDWETK--LSDDERHFVKHVLAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E + + Q E +HS T+ +I + D+ E LFN Sbjct: 75 GIVNENLAEHFLAEVQYTEAKFFYGFQVAMENIHSETYSLLIDTYIKDQKEKNHLFNALD 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KA+WAL++ S F + L F V EG++F F I Sbjct: 135 TIDCVRKKADWALRWIDNGS--------------FAERLVAFAAV-EGIFFSGSFCSIFW 179 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G++ + I RDE LH +F + + HL + +++ + ++ +A Sbjct: 180 LKKRGLMPGLSFSNELISRDEGLHCDFACLLYTK------HLIHQLSKEQVQEIILDAVE 233 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R ++G +F T NPF +M ++I ++ Sbjct: 234 IEKEFVTDALPVKLIGMNADLMAQYIEFVADRLLTELGNPKVFN-TTNPFDFM-DMISIQ 291 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ Sbjct: 292 GKTNFFEKRVAEYQKSG 308 >gi|82538850|ref|XP_723858.1| ribonucleotide reductase small chain [Plasmodium yoelii yoelii str. 17XNL] gi|145580416|pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580417|pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580418|pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580419|pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580420|pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580421|pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580422|pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580423|pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|23478298|gb|EAA15423.1| Ribonucleotide reductase, small chain [Plasmodium yoelii yoelii] Length = 349 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/330 (27%), Positives = 159/330 (48%), Gaps = 29/330 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++LN S+ L P+ Y W Y A + W E+ + DL K L +E+ Sbjct: 30 NEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDL---KDFEKLNVNEKH 86 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 87 FIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIK 146 Query: 141 DEGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 DE E N++ +P+I KA WA ++ +S + V E Sbjct: 147 DEKERLNLFHAIENIPAIKNKALWAAKWINDTNS--------------FAERIVANACVE 192 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G+ F F I + NK+ G+ + I RDE LH +F + + ++ + P Sbjct: 193 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP------- 245 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G +F +++ Sbjct: 246 ENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HSK 304 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 NPF WM ++I L+ + NFFE RV +YQ+ Sbjct: 305 NPFNWM-DLISLQGKTNFFEKRVADYQKSG 333 >gi|330814259|ref|YP_004358498.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327487354|gb|AEA81759.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 345 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 94/320 (29%), Positives = 159/320 (49%), Gaps = 30/320 (9%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y W ++ +L+ HW+P EVP+ +D+ W+ K L E+ ++ + FF ++ Sbjct: 35 PFRYPWCYDAWLTQQRIHWLPEEVPLAEDVRDWQKK--LLPHEKNLLTQIFRFFTQADVE 92 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V NN L Y + P E + A E VH + +++ ++G+ E E F Y+E+ Sbjct: 93 V-NNCYLRHYTTVFKPTEVLMMMTAFASMETVHVAAYSHLLDTIGMPETEYSAFLKYKEM 151 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 Y Q +F G K +E + + VF EG+ + FA +L+ Sbjct: 152 KD-------KYDYMQ-----NFNMGDK---REIAKTVAVFSAFTEGLQLFASFAILLNFP 196 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTML-HE 267 R NKM G+ + + +RDE+LH N I + N ENP L KE + T++ HE Sbjct: 197 RFNKMKGMGQIVTWSVRDETLHCNSMIKIFNTFCDENPGLLDDSLKKEIYEACSTIIEHE 256 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 +++A+ + GL A ++Y+++IANRR Q+ L L++ ENP W+ +++ Sbjct: 257 DAFIDLAFEMGDIE----GLKAEEVKKYIRWIANRRLAQLRLNDLYEVKENPLTWLDDML 312 Query: 328 DLKKEKNFFETRVTEYQQGA 347 + + NFFE R TEY + + Sbjct: 313 NGVEHMNFFEGRATEYSKAS 332 >gi|224372455|ref|YP_002606827.1| ribonucleotide-diphosphate reductase subunit beta [Nautilia profundicola AmH] gi|223589410|gb|ACM93146.1| ribonucleoside-diphosphate reductase, beta subunit [Nautilia profundicola AmH] Length = 346 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 153/316 (48%), Gaps = 15/316 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 L Y WA+ + N W P EV + +D ++ L E+ M + L +S+ Sbjct: 35 LSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMYDKALSQLIFMDSIQ 91 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 NN + ++ PE ++RQA+EEA+HS ++ ++ S+ L+ E++ M+R ++ Sbjct: 92 TNNTPDHVNPWITAPEVNMCIVRQAYEEALHSQSYAVMVDSISLNTDEIYEMWRVDANLR 151 Query: 157 AKANWALQYTQTLSSPSFTTGTK--DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 K + + + GTK + D E + V EG++FY GFA L RA Sbjct: 152 KK-------NEFIGNVYEEWGTKALNGDDEAKIYMIVANQCLEGIYFYNGFASFYVLARA 204 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM+G A+ ++I RDE H ++ +IK E P L+T E + + ML+ A LE Sbjct: 205 GKMLGSAQMIRFIQRDEVTHTLLFANIFKEIKKEFPDLFTPEVIKNIKDMLYAAYELERD 264 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWMSEVIDLKKE 332 + +G++ +++ Q++AN+R +GL+ LF +NP W ++ Sbjct: 265 WGWYITNDEILGMSKELIDRFTQYLANKRAQAMGLDLLFPEVGLKNPISWFDGFSSFNEQ 324 Query: 333 K-NFFETRVTEYQQGA 347 K NFFE V Y +G+ Sbjct: 325 KTNFFEGNVVNYSKGS 340 >gi|74025552|ref|XP_829342.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834728|gb|EAN80230.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] Length = 337 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 157/327 (48%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER IK Sbjct: 19 LLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---LDDGERHFIK 75 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + +D Sbjct: 76 HVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPD 135 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E L + R +P I KA WA+++ S SF T V + EG++ Sbjct: 136 EKQRLLHAIRTIPCIEKKAKWAIEWIG--SQTSFPTR------------LVAFAAVEGIF 181 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ K + + Sbjct: 182 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEK------YIVNKLPRDR 235 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ A L+E + + +P +G+N+ QY++F+A+R +G + + ++NPF Sbjct: 236 VLEIICNAVLIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SKNPF 294 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M ++I L+ + NFFE +V EYQ+ Sbjct: 295 DFM-DMISLQGKTNFFEKKVGEYQKAG 320 >gi|320164906|gb|EFW41805.1| ribonucleotide reductase m2 polypeptide [Capsaspora owczarzaki ATCC 30864] Length = 352 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 97/343 (28%), Positives = 154/343 (44%), Gaps = 36/343 (10%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GLS ++ E + + R + L P++Y W+ Y A + W EV + DL Sbjct: 25 GLSKLELDEPLLKPNPHRFV--------LFPIQYHDVWKMYKKAEASFWTAEEVDLSKDL 76 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W + L +ER I L FFA+S+ +V N++L + PE R + Q E Sbjct: 77 NDW---DKLKSEERHFISHVLAFFAASDGIVNENLLLRFSTEVQIPEVRSFYCFQIAIEN 133 Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +HS + +I D E LFN +P + KA WAL++ D Sbjct: 134 IHSEMYSLLIDMYIKDSAEREKLFNAIETLPCVAKKAQWALRWIS------------DRR 181 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 F L F V EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 182 STFAHRLIAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACMLF 240 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 + + ++ +A +E + + +P +G+N + Y++F+A+R Sbjct: 241 GLLN-------NRPSNADVLAIIKDAVAIEQEFLTDALPVALIGMNGGLMKTYIEFVADR 293 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +G E +K ENPF +M ++I L+ + NFFE RV EYQ+ Sbjct: 294 LLVALGQEKHYK-VENPFDFM-DLISLQGKTNFFERRVGEYQK 334 >gi|12085003|ref|NP_073405.1| 20L protein [Yaba-like disease virus] gi|56404692|sp|Q9DHU2|RIR2_YLDV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|12056179|emb|CAC21258.1| 20L protein [Yaba-like disease virus] Length = 325 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/315 (29%), Positives = 150/315 (47%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W+ Y A + W EV + D + W L+D+E+ IK L FFA+S+ Sbjct: 18 VFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLK---LSDNEKNFIKHILAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ Y + E R + Q E +HS + +I + LD E LFN Sbjct: 75 GIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KANWA ++ + S + T G + V + EG++F FA I Sbjct: 135 NMNCVKQKANWAKKWIE---SKNRTYGER----------LVAFAAVEGIFFSGSFAAIFW 181 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + + M G+ + I RDE LH +F I HL R ++ EA Sbjct: 182 IKKRGLMPGLTFSNELISRDEGLHCDFAC-------IMFKHLLNPPLNSVVRDIIIEAVN 234 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N +QY++F+A+R ++G + + ++NPF +M E I L+ Sbjct: 235 IEKNFLTEAIPVKLIGMNCDLMKQYIEFVADRLLLELGCDKYY-CSKNPFDFM-ENISLE 292 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV+EYQ+ Sbjct: 293 GKTNFFEKRVSEYQK 307 >gi|1710399|sp|P50649|RIR2_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase small subunit; AltName: Full=Ribonucleotide reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|349790|gb|AAA29754.1| ribonucleotide reductase R2 subunit [Plasmodium falciparum] Length = 322 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/331 (27%), Positives = 160/331 (48%), Gaps = 31/331 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +R+LN SD L P+ Y + Y A W E+ DL K L ++E+ Sbjct: 2 RRILNKESDRFTLYPILYPDVFPFYKKAEACFWTAEEIDYSSDL---KDFEKLNENEKHF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ ++ R + E +++ Q E +HS T+ +I + D Sbjct: 59 IKHVLAFFAASDGIVLENLAVSFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118 Query: 142 EGELFNMYR---EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E N++ +P++ KA WA ++ +S + V EG Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWINDTNS--------------FAERIVANACVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + F F I + NK+ G+ + I RDE LH +F + + + + P + Sbjct: 165 ILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLP-------E 217 Query: 259 QKSRTMLHEATLLEI--AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + ++ EA +E+ ++ E++P +G+N+ QY++F+A+R +G +F ++ Sbjct: 218 QMVQNIVKEAGGVEVEKSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HS 276 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +NPF WM ++I L+ + NFFE RV +YQ+ Sbjct: 277 KNPFNWM-DLISLQGKTNFFEKRVADYQKSG 306 >gi|158286793|ref|XP_308927.4| AGAP006818-PA [Anopheles gambiae str. PEST] gi|157020637|gb|EAA04227.4| AGAP006818-PA [Anopheles gambiae str. PEST] Length = 400 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 153/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W++ L ER I L FFA+S+ Sbjct: 93 IFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWET---LKPSERHFISHVLAFFAASD 149 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 150 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDSKEREFLFNAIE 209 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL + +SS G + V + EG++F FA I Sbjct: 210 TLPCVKRKADWALNW---ISSKKANFGER----------VVAFAAVEGIFFSGSFAAIFW 256 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + +L K +++ ++ +A L Sbjct: 257 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------YLVQKPSKERVTEIIRDAVL 309 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R ++G E ++ +T+NPF +M E I L+ Sbjct: 310 IEQEFLTKALPVDMLGMNCDLMSQYIEFVADRLLLELGCEKIY-HTKNPFSFM-EFISLE 367 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 368 GKTNFFEKKVGEYQK 382 >gi|187778605|ref|ZP_02995078.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC 15579] gi|187772230|gb|EDU36032.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC 15579] Length = 342 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 167/321 (52%), Gaps = 18/321 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY WA + Y + NN W+P E+ + +D+ K LTD ER + + F +S+ Sbjct: 32 IKYSWASDFYRTMLNNFWIPEEISLNEDV---KQFPYLTDGERNAFDKIISFLNFLDSVQ 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ + ++++ +RE Sbjct: 89 SENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTNPITRDKIYDQWREDEQ 147 Query: 155 ITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + + + A Y + P FL+ + Y++ EG++FY+GF+ +L R Sbjct: 148 LLERNKFIAGIYEKFNKEPEIYN--------FLRVIMANYIL-EGIYFYSGFSFFYTLAR 198 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM + ++YI RDE HL ++I ++K ENP+++T+E +++ R M+ EI Sbjct: 199 QGKMTATSTIFKYINRDEVTHLVLFQNIIKELKSENPNIFTEELEEEFREMMRMGVEHEI 258 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332 + +GLN ++Y+++++N R IGL+PL+ + ++P W+ L Sbjct: 259 KWGQYVTNNEILGLNDELIDKYIKYLSNLRLTAIGLKPLYPEINKHPMEWIDSFSKLNST 318 Query: 333 K-NFFETRVTEYQQGAELKWD 352 K +FFE +VT Y + A +D Sbjct: 319 KTDFFEAKVTNYTKAAVFDFD 339 >gi|156545974|ref|XP_001606963.1| PREDICTED: similar to ENSANGP00000013211 [Nasonia vitripennis] Length = 388 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 94/315 (29%), Positives = 154/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W Y A + W EV + D+A W N L D+ER I L FFA+S+ Sbjct: 79 LFPIQWPDIWHMYKKAEASFWTVEEVDLSKDMADW---NRLNDNERHFISHVLAFFAASD 135 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D + LFN Sbjct: 136 GIVNENLVERFSQEVQVTEARCFYGFQVAIENIHSEMYSLLIDTYISDASQRQFLFNAIE 195 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KANWAL + +S S T F + + F V EG++F FA I Sbjct: 196 TLPCVAKKANWALNW---ISHDSAT---------FAERVIAFAAV-EGIFFSGSFAAIFW 242 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + H+ K +++ +++ +A Sbjct: 243 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HIVQKPSEERVISIIKDAVT 295 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R ++G ++ +ENPF +M E I L+ Sbjct: 296 IEQEFLTDALPVEMIGMNCRLMCQYIEFVADRLLGELGCPKVYN-SENPFDFM-EHISLE 353 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 354 GKTNFFEKKVGEYQK 368 >gi|223039245|ref|ZP_03609535.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter rectus RM3267] gi|222879606|gb|EEF14697.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter rectus RM3267] Length = 340 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/332 (28%), Positives = 158/332 (47%), Gaps = 13/332 (3%) Query: 18 NVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 N+ D+R+ N + KY WA + + N W P EV D+ + LT Sbjct: 14 NLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTSGDVRDYAY--SLTQ 71 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ M S +S NN+ I +++ PE L RQA+EEA HS ++ ++ Sbjct: 72 AEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEEANHSKSYAVMVE 131 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 ++ + ++ M + + K ++ +SS + D++ L + V + Sbjct: 132 AICDNTDLIYEMEKHDEVLREKNDY-------ISSVYEELAGEVTDEKLLLAM-VANQIL 183 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E P L+T E Sbjct: 184 EGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRTERPDLFTSE 243 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + K M A LEI + +G EQY++++ ++R IGL+ + Sbjct: 244 MEAKIYDMFKRAGELEIKWGKYITQNQIMGFTDDIIEQYIRYLIDQRLVAIGLKRRYD-A 302 Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 +P W+ + +K NFFE +VT Y +G+ Sbjct: 303 RHPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS 334 >gi|307110551|gb|EFN58787.1| hypothetical protein CHLNCDRAFT_34102 [Chlorella variabilis] Length = 335 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 29/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L + D + P+KY WE Y A + W EV + D+ W+ L+DDER + Sbjct: 16 LLASNDDRFVMFPIKYRDIWEMYKKAEASFWTAEEVDLGSDVKDWER---LSDDERHFVS 72 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + + PE R + Q E +HS + ++ + D Sbjct: 73 HVLAFFAASDGIVNENLGARFMQEVQVPEARAFYGFQIAMENIHSEMYSLLLEAYIKDPK 132 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF+ VP + KA+WAL++ + + + + EG++ Sbjct: 133 EKDKLFHAIDTVPVVRKKAHWALKWING--------------SDLFSERLIAFACVEGIF 178 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + H+ + +++ Sbjct: 179 FSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYR-------HIHNRLSEER 231 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ +A +E + + +P +G+N+ QY++F+A+R +G P NPF Sbjct: 232 VAEIVTQAVEIEKEFICDALPVDLIGMNSRLMGQYIEFVADRLLVALG-NPKVYNVSNPF 290 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV +YQ+ Sbjct: 291 DWM-ELISLQGKTNFFEKRVGDYQKAG 316 >gi|189501948|ref|YP_001957665.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus 5a2] gi|189497389|gb|ACE05936.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus 5a2] Length = 355 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/320 (29%), Positives = 153/320 (47%), Gaps = 29/320 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ WE Y A + W E+ + DL W + L D ER I L FFA+S+ Sbjct: 46 LFPIEHHDIWEFYKKAEASFWTAEEIDLGQDLKDWAN---LNDGERHFISHVLAFFAASD 102 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E + + Q E +HS T+ +I + D E LFN Sbjct: 103 GIVNENLAENFVAEVQYTEAKFFYGFQIAVENIHSETYSLLIDTYIKDPQERDKLFNAID 162 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KA+WAL++ + S F + L F V EG++F F I Sbjct: 163 TLDCVKKKADWALRWIEQAS--------------FAERLVAFAAV-EGIFFSGSFCSIFW 207 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G++ + I RDE LH +F + HL K +++ R ++ +A Sbjct: 208 LKKRGLMPGLSFSNELISRDEGLHCDFACLLYAN------HLQNKLPEERVREIITDAVA 261 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R ++G ++ T NPF +M E+I L+ Sbjct: 262 IEKEFVTDALPVKLIGMNADLMSQYIEFVADRLLLELGCSKVYNAT-NPFDFM-EMISLQ 319 Query: 331 KEKNFFETRVTEYQQGAELK 350 + NFFE RV EYQ+ +K Sbjct: 320 GKTNFFEKRVGEYQKAGVMK 339 >gi|68485781|ref|XP_713171.1| hypothetical protein CaO19.9424 [Candida albicans SC5314] gi|68485874|ref|XP_713125.1| hypothetical protein CaO19.1868 [Candida albicans SC5314] gi|46434604|gb|EAK94008.1| hypothetical protein CaO19.1868 [Candida albicans SC5314] gi|46434651|gb|EAK94054.1| hypothetical protein CaO19.9424 [Candida albicans SC5314] gi|238883648|gb|EEQ47286.1| ribonucleoside-diphosphate reductase small chain 1 [Candida albicans WO-1] Length = 394 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 150/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y + + W E+ + DL W N + ++ER I R L FFA+S+ Sbjct: 83 IYPIKYPELWQFYKKSLASFWTAEELDLSKDLDDWN--NKMNENERFFISRVLAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + Q E +HS T+ +I + D E LFN Sbjct: 141 GIVNENLVENFCAEVQIPEAKSVYKFQIMMENIHSETYSLLIETYFKDPEEADFLFNAID 200 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WA+++ Q+ D + + L F V EG++F FA I Sbjct: 201 NIPFIRKKADWAIRWIQS------------EDALYAERLVAFAAV-EGIFFSGSFAAIFW 247 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE +H ++ + + +K K + ++ EA Sbjct: 248 LKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLK-------NKPSSEIIEKIITEAVD 300 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E Y + +P +G+N QY++F+A+R G + + T NPF +M E I L Sbjct: 301 IEKEYFSDALPVSLLGMNCDLMCQYVEFVADRLLVAFGNKKYYNVT-NPFDFM-ENISLA 358 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 359 GKTNFFEKRVSDYQKAG 375 >gi|268575178|ref|XP_002642568.1| C. briggsae CBR-RNR-2 protein [Caenorhabditis briggsae] gi|187023588|emb|CAP37241.1| CBR-RNR-2 protein [Caenorhabditis briggsae AF16] Length = 365 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/315 (29%), Positives = 150/315 (47%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PL++ W+ Y A + W EV + D+ W+ NG DE+ I R L FFA+S+ Sbjct: 58 IFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQYFISRVLAFFAASD 114 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + DE E LFN Sbjct: 115 GIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYSKLIETYIRDEKERMKLFNAIF 174 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E I KA+WAL++ D F + L F V EG++F FA I Sbjct: 175 EFEFIKKKADWALRWIS------------DTKASFAERLIAFAAV-EGIFFSGSFASIFW 221 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + ++ K Q++ ++ +A Sbjct: 222 LKKRGLMPGLTHSNELISRDEGLHRDFACLLYSMLQ-------NKLSQERIFEIIRDAVA 274 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N QY++F+A+ ++G + L+ +NPF +M E I + Sbjct: 275 IEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLQELGCDKLYN-VKNPFDFM-ENISID 332 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV+EYQ+ Sbjct: 333 GKTNFFEKRVSEYQR 347 >gi|322817571|gb|EFZ25271.1| ribonucleoside-diphosphate reductase small chain, putative [Trypanosoma cruzi] Length = 337 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/327 (29%), Positives = 160/327 (48%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+KY W+KY A ++ W E+ + DLA W+ N + E+ IK Sbjct: 19 LLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWEKMN---EGEKFFIK 75 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E VHS T+ ++ + D Sbjct: 76 HVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDTYITDTE 135 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E + + +P I KANWA+++ ++ SS F + L F V EG++ Sbjct: 136 EKDRMLHAISTIPCIQKKANWAIRWIRSSSS-------------FAERLVAFAAV-EGIF 181 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F + L + M G+ + I RDE LH +F + EN ++ K ++ Sbjct: 182 FSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFAC-----LLYEN-YIVNKLPTER 235 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R ++ A +E + +++P +G+NA Y++F+A+R +G E + ++NPF Sbjct: 236 IREIICSAVDIEREFICDSIPVRLLGMNADLMSTYIEFVADRLLVALGNERHYN-SKNPF 294 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M E+I L+ + NFFE +V EYQ+ Sbjct: 295 DFM-EMISLQGKTNFFEKKVGEYQKAG 320 >gi|291244313|ref|XP_002742041.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Saccoglossus kowalevskii] Length = 463 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/329 (28%), Positives = 160/329 (48%), Gaps = 28/329 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+ Y A + W EV + DL W L ++ER Sbjct: 142 EETLLKPNIDRFVVFPIKYQDIWKYYKKAQASFWTVEEVDLGKDLPDWVK---LKEEERR 198 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+V + + E R + Q E VHS + +I + Sbjct: 199 FISHVLAFFAASDGIVLENLVQRFSQEVQVAEARCFYGFQIAMENVHSEMYSLLIDAYIK 258 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 ++ E LF+ +P + KA+WA+++ Q+ S F + L F V E Sbjct: 259 EQEEKTRLFHAIDNMPCVKKKADWAIEWIQSEES------------SFGERLVAFAAV-E 305 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I + + G+ + I RDE LH +F + + HL K Sbjct: 306 GIFFSGAFASIFWFKKRGLLPGLTFSNELISRDEGLHCDFACLIFS-------HLTYKPS 358 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +++ R ++ +A +E + +E +P G +G+N Y++F+A+R ++ + ++ + E Sbjct: 359 KERIRNIITQAVDIEKEFWNEALPVGLIGMNVTLMNYYVEFVADRLLLELNCDKVY-HRE 417 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 NPF +M E I L+ + NFFE RV EYQ+ Sbjct: 418 NPFDFM-ENISLEGKTNFFEKRVGEYQKA 445 >gi|146090952|ref|XP_001466403.1| ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] gi|321399462|emb|CBZ08664.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] Length = 392 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 167/358 (46%), Gaps = 37/358 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNN 52 A + + P+ AG + + D + NA + Q L P++Y W KY + Sbjct: 43 AEDLVMKPVAAGTEVLTADKVAKGTNAEEEPLQQENPLRYVLFPIQYHDIWRKYKEQESC 102 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE Sbjct: 103 IWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPE 159 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTL 169 R + Q E +HS T+ ++ + D E L + + +P I KA WA+++ Sbjct: 160 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIG-- 217 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 SS SF Q+ + + EG++F F + L + M G+ + I R Sbjct: 218 SSASF------------QERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISR 265 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE LH +F + N H+ K +++ ++ +A +E + + +P +G+NA Sbjct: 266 DEGLHTDFACLLYNS------HIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNA 319 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 QY++F+A+R +G E ++ T+ PF +M E+I L+ + NFFE +V EYQ+ Sbjct: 320 ELMAQYIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAG 375 >gi|27923845|sp|Q9QTF2|RIR2_RSIV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|5688956|dbj|BAA82755.1| ribonucleotide reductase small subunit [Red sea bream iridovirus] gi|327396894|dbj|BAK14260.1| ribonucleotide diphosphate reductase small subunit [Red sea bream iridovirus] Length = 312 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/306 (29%), Positives = 147/306 (48%), Gaps = 27/306 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W Y A + W EV + D+ W K LT+ ER + L FFA ++ +V +N+V Sbjct: 14 WAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71 Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159 + L + PE R + Q E +H+ + +I +L E + LF+ ++P + AKA Sbjct: 72 NFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 WA Q+ P T L F V EG+ F FA I L + + M G Sbjct: 132 QWAAQWLNATHKPIATR------------LLAFAAV-EGVMFSGSFAAIFWLKKRSLMPG 178 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +A + I RDE LH +F + Q+ K Q + ++ +A +E A+ E Sbjct: 179 LAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHQIISDAVDIETAFFREA 231 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 + +G+N+ S + Y+QF+A+R +G ++ + NPF +M I ++ + NFFE R Sbjct: 232 LKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNVS-NPFDFMDN-ISIEGKTNFFERR 289 Query: 340 VTEYQQ 345 V+EYQ+ Sbjct: 290 VSEYQR 295 >gi|71416121|ref|XP_810103.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi strain CL Brener] gi|70874586|gb|EAN88252.1| ribonucleoside-diphosphate reductase small chain, putative [Trypanosoma cruzi] Length = 337 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/327 (29%), Positives = 160/327 (48%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+KY W+KY A ++ W E+ + DLA W+ N + E+ IK Sbjct: 19 LLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWEKMN---EGEKFFIK 75 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E VHS T+ ++ + D Sbjct: 76 HVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDTYITDTE 135 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E + + +P I KANWA+++ ++ SS F + L F V EG++ Sbjct: 136 EKDRMLHAISTIPCIQKKANWAIRWIRSSSS-------------FAERLVAFAAV-EGIF 181 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F + L + M G+ + I RDE LH +F + EN ++ K ++ Sbjct: 182 FSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFAC-----LLYEN-YIVNKLPTER 235 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R ++ A +E + +++P +G+NA Y++F+A+R +G E + ++NPF Sbjct: 236 IREIICSAVDIEREFICDSIPVRLLGMNADLMSTYIEFVADRLLVALGNERHYN-SKNPF 294 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M E+I L+ + NFFE +V EYQ+ Sbjct: 295 DFM-EMISLQGKTNFFEKKVGEYQKAG 320 >gi|300706309|ref|XP_002995432.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01] gi|239604534|gb|EEQ81761.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01] Length = 325 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/327 (30%), Positives = 155/327 (47%), Gaps = 32/327 (9%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A ++ W EV + D W S L D ER I Sbjct: 10 LLNPNEERYVLFPIKYHDIWQMYKKAESSFWTVEEVDLTADRNDWLS---LNDKERYFIS 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+V ++ E + + Q E +HS + +I + D+ Sbjct: 67 NILAFFAASDGIVNANLVERFANEVTILEAKCFYGFQVAIENIHSEMYSLLIDAYITDQD 126 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA+WAL++ KD F + F V EG++ Sbjct: 127 EKTHLFNAISTIPCIKKKADWALKW------------IKDEKSSFATRVIAFACV-EGIF 173 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQ 259 F FA I L M G+ + I RDE LH +F ++NQ I ++PH+ Sbjct: 174 FSGAFASIFWLKNRGLMPGLTFSNELISRDEGLHCDFAC-LLNQYLINKSPHIL------ 226 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319 ++ EA +E + ++P +G+N QY++F+A+R +GLE + T NP Sbjct: 227 ---DIVKEAVEIEKEFLGVSLPVNLIGMNCKLMCQYIEFVADRLLINLGLEKYYN-TLNP 282 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQG 346 F +M E I L + NFF+ R ++YQ+ Sbjct: 283 FDFM-ENISLVGKTNFFDKRESQYQKA 308 >gi|330837704|ref|YP_004412345.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374] gi|329749607|gb|AEC02963.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374] Length = 360 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/351 (27%), Positives = 171/351 (48%), Gaps = 25/351 (7%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 PI +D +RM+ + ++N LKYGW + Y A NN W+P E+ M D+ Sbjct: 21 PIFNEHGDTGLDKRRMVGGNTTNLNDFNNLKYGWTSDWYRQAMNNFWIPEEINMNTDVQD 80 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 ++ L+ E+ + L F +S+ N+ + + ++ E L QAF+EA+H Sbjct: 81 YRR---LSPAEKTAYDKILSFLIFLDSVQTANLP-NLAQFITANEVNLCLTIQAFQEAIH 136 Query: 128 SHTFQYIITSL-GLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S ++ Y++ ++ DE G L+ +R+ + A+ + Q +Q+ Sbjct: 137 SQSYSYMLDTICSPDERTGILY-QWRDDAHLLARNKFIGDLYQNFM----------VNQD 185 Query: 185 FLQDL--FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 Q + V + EG++FY+GF +LGR NKM G ++ +YI RDE+ HL ++ Sbjct: 186 VCQIVKTMVANYILEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDETTHLWLFRSIL 245 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 +++ E P ++T + R M+ + EIA+ H + VGLN Y+Q++ N Sbjct: 246 REMQKEEPAMFTPNLVDEYRAMIKQGADQEIAWGHYVIGDDIVGLNKDMVTDYIQYLGNL 305 Query: 303 RCHQIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 RC +G +P+++ + + P W+ + + K +FFE R T Y + L Sbjct: 306 RCTDLGFQPIYEGHDKEPETMKWVGQYSNANLIKTDFFEARNTAYAKSTSL 356 >gi|162147608|ref|YP_001602069.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|209542240|ref|YP_002274469.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|161786185|emb|CAP55767.1| putative ribonucleotide reductase small subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209529917|gb|ACI49854.1| Ribonucleoside-diphosphate reductase [Gluconacetobacter diazotrophicus PAl 5] Length = 353 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/352 (26%), Positives = 167/352 (47%), Gaps = 27/352 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + N TG +P ++ + V+ + L + + + P +Y WA++ +L+ HW+P EVP Sbjct: 4 ITNATGTAP-ESAPQPTGVEARLDLLTSNPIYK--PFRYPWAYDAWLTQQRVHWLPEEVP 60 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DD+ W LT+ E+ ++ + FF S+ V NN + Y + P ++ Sbjct: 61 LADDVKDWHRT--LTESEQHLVTQIFRFFTQSDVEV-NNCYMKHYSRVFKP-TEVLMMLS 116 Query: 121 AFE--EAVHSHTFQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTT 176 AF E +H + +++ ++G+ E E F Y+E+ Y Q S Sbjct: 117 AFSNIETIHIAAYSHLLDTIGMPEMEYSAFLKYKEMKD-------KYDYMQGFSV----- 164 Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236 D+ E + L F EG+ + FA +L+ R NK+ G+ + + +RDE+LH Sbjct: 165 ---DSKPEIARTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETLHCL 221 Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQY 295 + ENP +WT + + + E A+ G V GL+ + Y Sbjct: 222 SMARLFRVFIQENPEIWTDALRADIVQICRDIVEHEDAFIDLCFEMGPVEGLDGDLVKTY 281 Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++FIA+RR + +GL+ ++ NP PW+ ++++ + NFFE R TEY + + Sbjct: 282 IRFIADRRLNLLGLDGIYDVPSNPLPWVDDMLNAVEHTNFFENRSTEYSRAS 333 >gi|157939640|ref|YP_001497012.1| ribonucleotide reductase [Tanapox virus] gi|146746356|gb|ABQ43492.1| ribonucleotide reductase [Tanapox virus] gi|146746512|gb|ABQ43647.1| ribonucleotide reductase [Tanapox virus] Length = 325 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/315 (29%), Positives = 149/315 (47%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W+ Y A + W EV + D + W L+D+E+ IK L FFA+S+ Sbjct: 18 VFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDWLK---LSDNEKNFIKHILAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ Y + E R + Q E +HS + +I + LD E LFN Sbjct: 75 GIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KANWA ++ + S + T G + V + EG++F FA I Sbjct: 135 NMNCVKQKANWAKKWIE---SKNRTYGER----------LVAFAAVEGIFFSGSFAAIFW 181 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + + M G+ + I RDE LH +F I HL R ++ EA Sbjct: 182 IKKRGLMPGLTFSNELISRDEGLHCDFAC-------IMFKHLLNPPLNSVVRDIIIEAVN 234 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N +QY++F+A+R ++G + ++NPF +M E I L+ Sbjct: 235 IEKNFLTEAIPVKLIGMNCDLMKQYIEFVADRLLLELGCNKYY-CSKNPFDFM-ENISLE 292 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV+EYQ+ Sbjct: 293 GKTNFFEKRVSEYQK 307 >gi|4836362|gb|AAD30422.1|AF117061_1 ribonucleotide reductase R2 subunit [Aedes albopictus] Length = 398 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 94/315 (29%), Positives = 152/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DLA W+ L E+ I L FFA+S+ Sbjct: 91 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLADWEK---LKSGEKHFISHVLAFFAASD 147 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 148 GIVNVNLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDSKEREYLFNAID 207 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL + +SS G + V + EG++F FA I Sbjct: 208 NLPCVKKKADWALNW---ISSKQANFGER----------VVAFAAVEGIFFSGTFASIFW 254 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + +L K Q++ ++ EA L Sbjct: 255 LKKRGLMPGLTFSNELISRDEGLHTDFACLMFK-------YLVQKPSQERVIEIIREAVL 307 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F A+R ++G++ ++ T+NPF +M E I L+ Sbjct: 308 IEQEFLTKALPVDLLGMNCELMSQYIEFEADRLLLELGIDKIYN-TKNPFSFM-EFISLE 365 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 366 GKTNFFEKKVGEYQK 380 >gi|212697417|ref|ZP_03305545.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM 7454] gi|325846383|ref|ZP_08169352.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212675609|gb|EEB35216.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM 7454] gi|325481567|gb|EGC84607.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 352 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 95/348 (27%), Positives = 178/348 (51%), Gaps = 23/348 (6%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E +++ +R++N + ++N +KY W + Y A NN W+P E+ + D+ +++ Sbjct: 18 EGDIDLSKRRIINGNTTNLNDFNNVKYTWTNDWYRQAMNNFWIPEEINLNQDIKDYRN-- 75 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ E+ R L F +S+ N+ + +++ E L Q ++EA+HS ++ Sbjct: 76 -LSKAEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLAIQTYQEAIHSQSYS 133 Query: 133 YIITSL-GLDE-GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEF-LQD 188 YI+ ++ DE + +++E + + + QY + + D EF L Sbjct: 134 YILDTICSPDERTRILYLWKEDEHLLKRNKFIGDQYNEFIKD----------DSEFNLMR 183 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + + EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL +IN +K E Sbjct: 184 VLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSMINDLKEE 243 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+T E ++ ++L E EIA+ + GLN+ E Y++++ N R +G Sbjct: 244 RPDLFTDELKEFYLSLLKEGVEQEIAWGKYAIGDEIQGLNSQMIEDYIKYLGNLRAKGLG 303 Query: 309 LEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 L +++ Y E P W+SE D + K +FFE +V+ Y + + ++ D Sbjct: 304 LGKIYEGYEEEPQSMKWVSEYSDPNQVKTDFFEGKVSAYSKSSVIEDD 351 >gi|312130971|ref|YP_003998311.1| ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM 17132] gi|311907517|gb|ADQ17958.1| Ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM 17132] Length = 328 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 154/317 (48%), Gaps = 29/317 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ WE Y A + W E+ + D W S L D ER I L FFA+S+ Sbjct: 22 IFPIKHNDIWEFYKKAEASFWTAEELDLSQDHKDWAS---LNDGERHFISHVLAFFAASD 78 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + ++ E + + Q E +H+ T+ +I + D E + N Sbjct: 79 GIVNENLAVGFLSNVQYAEAKCFYGFQIMIENIHAETYSLLIDTYIKDTTERQRMLNAIE 138 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA+++ + GT F++ L F V EG++F F I Sbjct: 139 TIPCVKKKADWAIRWIE--------QGT------FIERLIAFAAV-EGIFFSGSFCSIFW 183 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + ++ K +++ T++ +A Sbjct: 184 LKKRGLMPGLTFSNELISRDEGLHRDFACLLYTK------YIVNKLPEEQVYTIIKDAVE 237 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NAP QY++F+A+ + L+ ++ T NPF +M ++I L+ Sbjct: 238 IEKEFVSDALPVSLIGMNAPQMCQYIEFVADHLLESLNLKKVYNAT-NPFDFM-DLISLQ 295 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ Sbjct: 296 GKTNFFEKRVGEYQKAG 312 >gi|47208564|emb|CAF96041.1| unnamed protein product [Tetraodon nigroviridis] Length = 352 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 100/336 (29%), Positives = 155/336 (46%), Gaps = 42/336 (12%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DLA W S L +E+ I L FFA+S+ Sbjct: 17 IFPIQYPDIWKMYKQAQASFWTVEEVDLSKDLAHWDS---LKPEEKHFISHVLAFFAASD 73 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E+VHS + +I + D E LFN Sbjct: 74 GIVNENLVQRFCQEVQVPEARSFYSYQVLIESVHSEMYSLLINTYIRDLKEREHLFNAIY 133 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WALQ+ D+ F + L F V EG++F FA I Sbjct: 134 TMPCVKRKADWALQWIN------------DSTSTFGERLVAFAAV-EGIFFSGSFASIYW 180 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGI----------------DVINQ-IKIENPHLW 253 L + M G+ + I RDE LH F D+I + + IE Sbjct: 181 LKKRGLMPGLTYSNELISRDEGLHCTFACLLYSYLVKKPSEDRVKDIITKAVSIEQVGGS 240 Query: 254 TKEF---QQKSRTMLHEATLLEI-AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 + + ++ +AT + + E +P +G+N +QY++F+A+R +GL Sbjct: 241 YRSMDGNKPNREVLIKDATCFCLQEFLTEALPVDLIGMNRCLMKQYIEFVADRLFADLGL 300 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ++ ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 301 AKMYN-AENPFDFM-EAISLEGKTNFFEKRVAEYQR 334 >gi|308490981|ref|XP_003107682.1| CRE-RNR-2 protein [Caenorhabditis remanei] gi|308250551|gb|EFO94503.1| CRE-RNR-2 protein [Caenorhabditis remanei] Length = 377 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 150/315 (47%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PL++ W+ Y A + W EV + D+ W+ NG DE+ I R L FFA+S+ Sbjct: 70 IFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQYFISRVLAFFAASD 126 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + DE E LFN Sbjct: 127 GIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYSKLIETYIRDEKERLTLFNAIF 186 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E I KA+WA+++ D F + L F V EG++F FA I Sbjct: 187 EFEFIKKKADWAMKWIS------------DKKASFAERLIAFAAV-EGIFFSGSFASIFW 233 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + ++ K Q++ ++ +A Sbjct: 234 LKKRGLMPGLTHSNELISRDEGLHRDFACLLYSMLQ-------NKLTQERIFEIIRDAVC 286 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N QY++F+A+ ++G + L+ +NPF +M E I + Sbjct: 287 IEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLAELGCDKLYN-VKNPFDFM-ENISID 344 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV+EYQ+ Sbjct: 345 GKTNFFEKRVSEYQR 359 >gi|73544537|ref|XP_848163.1| ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] gi|321438516|emb|CBZ12275.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] Length = 388 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 91/317 (28%), Positives = 152/317 (47%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W KY + W E+ + +D+ W + L D ER IK L FFA S+ Sbjct: 80 LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSD 136 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS T+ ++ + D E L + + Sbjct: 137 GIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 196 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ SS SF Q+ + + EG++F F + Sbjct: 197 TIPCIQKKAEWAVRWIG--SSASF------------QERLIGFAAVEGIFFSGSFCALFW 242 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + N H+ K +++ ++ +A Sbjct: 243 LKKRGLMPGLTFSNELISRDEGLHTDFA------CLLYNSHIKHKLPRERVLEIIVDAVN 296 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G E ++ T+ PF +M E+I L+ Sbjct: 297 IEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQ 354 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ Sbjct: 355 GKTNFFEKRVGEYQKAG 371 >gi|307192386|gb|EFN75622.1| Ribonucleoside-diphosphate reductase subunit M2 [Harpegnathos saltator] Length = 344 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 92/332 (27%), Positives = 157/332 (47%), Gaps = 28/332 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKNGLTD 76 N D + +L + + P++Y W+ Y A + W EVP+ D W+ K L Sbjct: 14 NPDLEPLLQEEPNRFVIFPIRYPDIWDMYKKAVASFWTIEEVPLHKLDKKDWEEK--LNS 71 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DER I L FFA+S+ +V N++ + + E R + Q E +HS + +I Sbjct: 72 DERYFISHVLAFFAASDGIVNENLIERFCQEVKISEARCFYGFQIAIENIHSEMYSLLIE 131 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + D E LFN +P +T KANWAL + S+ + V + Sbjct: 132 TYISDLKEKDFLFNAIETLPCVTKKANWALNWINHESAT-------------FPERIVAF 178 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F FA I L + M G+ + I RDE LH +F + + I+ P Sbjct: 179 AAVEGIFFSGSFAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFKHV-IQKPSF- 236 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++ +T++ +A +E + + +P +G+N Y++F+A+R +G + ++ Sbjct: 237 -----ERVKTIIMDAVEIEKEFLTQALPVKLIGMNCTLMCTYIEFVADRLFVALGFDKVY 291 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +ENPF +M + I L+ + NFFE +V EY++ Sbjct: 292 N-SENPFSFM-DFISLEGKTNFFEKKVGEYKK 321 >gi|269963257|ref|ZP_06177590.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3] gi|269832005|gb|EEZ86131.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3] Length = 310 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 95/327 (29%), Positives = 150/327 (45%), Gaps = 36/327 (11%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y + W E+ DLA LT+ E+ I+ L FFA SE Sbjct: 9 LFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLA---DLAKLTEGEKHFIRHVLAFFAQSE 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 ++ N++ Y + E R +L QAF E +H+ T+ + + D E LFN Sbjct: 66 GMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERLFNAIE 125 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP++ KA W +++ + D+ L F +V EG++F F I Sbjct: 126 NVPTVKRKAEWVMKWISS-------------DKTLAMRLIAFGLV-EGLFFAGSFCAIYY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFG---IDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A I RDE LH +F + Q K+ QQ+ + E Sbjct: 172 FRKRGLLAGLAASNDLIARDEGLHFSFSALLFKTLGQGKVT---------QQEFEEICRE 222 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A +E + E +P +G+NA QY++ A+ G P+F ENPF +M ++ Sbjct: 223 AVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIAGLFGFTPIFG-AENPFDYMR-LL 280 Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352 D++ + NFFE RVTEY+ Q +L +D Sbjct: 281 DMEGKTNFFEKRVTEYKRPQDRQLSFD 307 >gi|211956300|ref|YP_002302368.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84] gi|115503095|gb|ABI99013.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84] Length = 321 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 93/315 (29%), Positives = 151/315 (47%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DL WK LTD+ER IK L FFA+S+ Sbjct: 14 IFPIVYNDIWIMYKKAVASFWTTEEVDLSKDLLDWKK---LTDNERYFIKNILAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +V N+ Y + E R + Q E +HS + +I + D E ++ + + Sbjct: 71 GIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITDVDEKNHLLKAID 130 Query: 154 SITA---KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +I KA WA ++ D + + + L F V EG++F FA I Sbjct: 131 TIDCVKEKAKWAEKWIL------------DKESSYGERLVAFAAV-EGIFFSGAFASIFW 177 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + Q+ + P+ + ++ EA Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKQL-LHPPN------PSRIINIIVEAVS 230 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E ++ +P +G+N QY++F+A+R ++G +FK +ENPF +M E I L+ Sbjct: 231 IEKSFLTTALPVKLIGMNCELMCQYIEFVADRLLSELGCTKIFK-SENPFDFM-ESISLE 288 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV++YQ+ Sbjct: 289 GKTNFFEKRVSDYQK 303 >gi|8101697|gb|AAF72618.1|AF252539_2 ribonucleotide reductase small subunit M2 [Leishmania amazonensis] Length = 345 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 98/353 (27%), Positives = 165/353 (46%), Gaps = 37/353 (10%) Query: 7 LSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNNHWMPT 57 + P+ AG + + D + NA + Q L P++Y W KY + W Sbjct: 1 MKPVAAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVE 60 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE R + Sbjct: 61 EIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFY 117 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +HS T+ ++ + D E L + + +P I KA WA+++ SS SF Sbjct: 118 GFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIG--SSASF 175 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 Q+ + + EG++F F + L + M G+ + I RDE LH Sbjct: 176 ------------QERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLH 223 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 +F + N H+ K +++ ++ +A +E + + +P +G+NA Q Sbjct: 224 TDFA------CLLYNSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQ 277 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 Y++F+A+R +G E ++ T+ PF +M E+I L+ + NFFE RV EYQ+ Sbjct: 278 YIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAG 328 >gi|62421216|gb|AAX82336.1| ribonucleotide reductase small chain [Orange-spotted grouper iridovirus] Length = 312 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 91/306 (29%), Positives = 146/306 (47%), Gaps = 27/306 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W Y A + W EV + D+ W K LT+ ER + L FFA ++ +V +N+V Sbjct: 14 WAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71 Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159 + L + PE R + Q E +H+ + +I +L E + LF+ ++P + AKA Sbjct: 72 NFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 WA Q+ P T L F V EG+ F FA I L + + M G Sbjct: 132 QWAAQWLNATHKPIATR------------LLAFAAV-EGVMFSGSFAAIFWLKKRSLMPG 178 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +A + I RDE LH +F + Q+ K Q + ++ +A +E A+ E Sbjct: 179 LAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHEIISDAVDIETAFFREA 231 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 + +G+N+ S + Y+QF+A+R +G ++ NPF +M I ++ + NFFE R Sbjct: 232 LKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYN-VGNPFDFMDN-ISIEGKTNFFERR 289 Query: 340 VTEYQQ 345 V+EYQ+ Sbjct: 290 VSEYQR 295 >gi|262277047|ref|ZP_06054840.1| ribonucleoside-diphosphate reductase, beta subunit [alpha proteobacterium HIMB114] gi|262224150|gb|EEY74609.1| ribonucleoside-diphosphate reductase, beta subunit [alpha proteobacterium HIMB114] Length = 342 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 93/320 (29%), Positives = 157/320 (49%), Gaps = 30/320 (9%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y W ++ +L+ HW+P E+P+ +D+ W+ LT E+ ++ + FF ++ Sbjct: 32 PFRYPWCYDAWLTQQRIHWLPEEIPLAEDVRDWQK--NLTAHEKNLLTQIFRFFTQADVE 89 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREV 152 V NN L Y + P E + A E +H + +++ ++G+ E E F Y+E+ Sbjct: 90 V-NNCYLRHYTTVFKPTEVLMMMTAFASMETIHVAAYSHLLDTIGMPESEYSAFLKYKEM 148 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 Y Q +F K +E + + VF EG+ + FA +L+ Sbjct: 149 KD-------KYDYMQ-----NFNVNNK---REIAKTVAVFSAFTEGLQLFASFAILLNFP 193 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTML-HE 267 R NKM G+ + + +RDE+LH N I + N ENP L KE RT++ HE Sbjct: 194 RFNKMKGMGQVVTWSVRDETLHCNSMIKIFNTFCAENPGLLDESLKKEITDACRTIVEHE 253 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 +++A+ E P GL A + Y+++IANRR Q+ L+ ++ ENP W+ ++ Sbjct: 254 DAFIDLAF--EMGP--IEGLTAQQIKDYIRWIANRRLVQLKLDEIYDVKENPLEWIDTML 309 Query: 328 DLKKEKNFFETRVTEYQQGA 347 + + NFFE R TEY + + Sbjct: 310 NGVEHMNFFEGRATEYSKAS 329 >gi|256545921|ref|ZP_05473276.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus vaginalis ATCC 51170] gi|256398343|gb|EEU11965.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus vaginalis ATCC 51170] Length = 352 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 95/348 (27%), Positives = 176/348 (50%), Gaps = 23/348 (6%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E +++ +R++N + ++N +KY W + Y A NN W+P E+ + D+ K Sbjct: 18 EGDIDLSKRRIINGNTTNLNDFNNVKYTWTSDWYRQAMNNFWIPEEINLNQDI---KDYR 74 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ E+ R L F +S+ N+ + +++ E L Q ++EA+HS ++ Sbjct: 75 NLSKAEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLAIQTYQEAIHSQSYS 133 Query: 133 YIITSL-GLDE-GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEF-LQD 188 YI+ ++ DE + +++E + + + QY + + D EF L Sbjct: 134 YILDTICSPDERTRILYLWKEDDHLLKRNKFIGDQYNEFIKD----------DSEFNLMR 183 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + + EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL +IN +K E Sbjct: 184 VLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSMINDLKEE 243 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+T E ++ ++L E EIA+ + GLN+ E Y++++ N R +G Sbjct: 244 RPDLFTDELKEFYLSLLKEGVEQEIAWGKYAIGDEIQGLNSQMIEDYIKYLGNLRAKGLG 303 Query: 309 LEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 L +++ Y + P W+SE D + K +FFE +V+ Y + + ++ D Sbjct: 304 LGTIYEGYEDEPQSMKWVSEYSDPNQVKTDFFEGKVSAYSKSSVIEDD 351 >gi|15617531|ref|NP_258331.1| RR2B [Spodoptera litura NPV] gi|15553267|gb|AAL01745.1|AF325155_57 ribonucleotide reductase small subunit homolog [Spodoptera litura NPV] Length = 333 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 96/331 (29%), Positives = 158/331 (47%), Gaps = 28/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N+ D+ +L + P++Y W Y A + W EV + DL+ W S L + Sbjct: 8 NMSDEPLLQENPRRFVMFPIEYPDIWNMYKKAEASFWTVEEVDLSKDLSDWDS---LKES 64 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER IK L FFA+S+ +V N+V + + E R + Q E VHS + +I + Sbjct: 65 ERNFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQVAIENVHSEMYSLLIDT 124 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P+I KA W++++ K A F + L F Sbjct: 125 YVKDNDEKRRLFNAIETMPAIAKKAEWSIKW------------IKSATATFAERLIAFAA 172 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 V EG++F FA I + + M G+ + I RDE LH +F + H+ Sbjct: 173 V-EGIFFSGSFAAIFWMKKRGLMPGLTFSNELISRDEGLHTDFAC-------LMYSHIVN 224 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K + + ++ EA +E + E +P +G+N +Y++F+A+R ++ E + Sbjct: 225 KPTRDRILDIITEAVAIENEFVTEALPVAMLGMNNDLMSKYIEFVADRLLLELIGERHYN 284 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 T+NPF +M+ +I L+ + NFFE +V+EYQ+ Sbjct: 285 -TKNPFDFMN-LISLEGKTNFFEKKVSEYQK 313 >gi|146090970|ref|XP_001466408.1| ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] gi|134070770|emb|CAM69127.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] Length = 388 Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 98/356 (27%), Positives = 165/356 (46%), Gaps = 37/356 (10%) Query: 4 NTGLSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNNHW 54 N + P+ AG + + D NA + Q L P++Y W KY + W Sbjct: 41 NLVMKPVAAGAEVLTADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIW 100 Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE R Sbjct: 101 TVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEAR 157 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 + Q E +HS T+ ++ + D E L + + +P I KA WA+++ SS Sbjct: 158 AFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIG--SS 215 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 SF Q+ + + EG++F F + L + M G+ + I RDE Sbjct: 216 ASF------------QERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDE 263 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 LH +F + N H+ K +++ ++ +A +E + + +P +G+NA Sbjct: 264 GLHTDFA------CLLYNSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAEL 317 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 QY++F+A+R +G E ++ T+ PF +M E+I L+ + NFFE +V EYQ+ Sbjct: 318 MAQYIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAG 371 >gi|331245491|ref|XP_003335382.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309314372|gb|EFP90963.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 380 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 93/317 (29%), Positives = 146/317 (46%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W Y A + W E+ + D+ W +K L DE+ IK L FFA+S+ Sbjct: 60 LFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWDNK--LNADEKHFIKHVLAFFAASD 117 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + E R + Q E +HS + +I + + E LF+ Sbjct: 118 GIVNENLIERFSGEVQVAEARCFYGFQIMMENIHSEVYSLLIDTYVREPTERAHLFDAID 177 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA+WAL T D F + L F V EG++F FA I Sbjct: 178 TIPCIRKKADWAL------------TWISDKKSTFGERLIAFAAV-EGIFFSGSFASIFW 224 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL + + ++ +A Sbjct: 225 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFT-------HLERRPHPDTVQAIIAQAVE 277 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G E + T NPF +M E+I L Sbjct: 278 IEKEFLSDALPCKLIGMNADLMCQYIEFVADRLLVALGNEKFYNAT-NPFDFM-EMISLS 335 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++Y + Sbjct: 336 GKTNFFEKRVSDYAKAG 352 >gi|38229183|ref|NP_938276.1| 20L [Yaba monkey tumor virus] gi|38000454|gb|AAR07377.1| 20L [Yaba monkey tumor virus] Length = 325 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 152/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + D W L+++E+ IK L FFA+S+ Sbjct: 18 VFPIVYKDIWMMYKKAVASFWTVEEVDLSKDFPDWLK---LSENEKKFIKHILAFFAASD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ Y + E R + Q E +HS + +I + LD E LFN Sbjct: 75 GIVNENLAERFYSEVQVSEARCFYGFQIAMENIHSEMYSLLIDTYILDSKEKNYLFNAIE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KANWA ++ ++ +S T G + + + EG++F FA I Sbjct: 135 NMNCVKQKANWARKWIESKNS---TYGER----------LIAFAAVEGIFFSGSFAAIFW 181 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + + M G+ + I RDE LH +F + + NP L + R ++ EA Sbjct: 182 IKKRGLMPGLTFSNELISRDEGLHCDFACMMFKHLS--NPPL-----ENVIRDIVIEAVD 234 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E MP +G+N +QY++F+A+R ++G + + ++NPF +M E I L+ Sbjct: 235 IEKNFLTEAMPVKLIGMNCDLMKQYIEFVADRLLLELGCKKYY-CSKNPFDFM-ENISLE 292 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV+EYQ+ Sbjct: 293 GKTNFFEKRVSEYQK 307 >gi|209170936|ref|YP_002268082.1| agip52 [Agrotis ipsilon multiple nucleopolyhedrovirus] gi|208436527|gb|ACI28754.1| ribonucleotide reductase-2B [Agrotis ipsilon multiple nucleopolyhedrovirus] Length = 313 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 94/316 (29%), Positives = 156/316 (49%), Gaps = 28/316 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ + W Y A + W EV M D ++SK L DDER IK L FFA+++ Sbjct: 8 LKPILHDDLWAAYKQAFDCMWKVEEVDMSRDYDDFESK--LNDDERYFIKHVLAFFAAAD 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V N++ + R++ E + + Q E VH+ + +I L DE E L N + Sbjct: 66 SIVNINLIEYMQRNVPELEAQYFYNLQVLIECVHTEMYNLLIEQLIKDEHERDTLLNAFE 125 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP + KA WA+++ ++ D L + V + + EG++F FA I Sbjct: 126 HVPCVRKKAQWAMKWIES-------------DTATLAERMVAFAIVEGVFFSGSFAAIFY 172 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS-RTMLHEAT 269 + M G+ + I RDE LH +F + + ++ T++ + +M EA Sbjct: 173 IKTKGIMPGLTFSNELISRDEGLHTDFAC-LYYKTRV------TEKLDSDTILSMFKEAV 225 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E + +P +G+NA S +Y++F+A+R Q+G +P + NPF +M+ I L Sbjct: 226 AIEKEFFTAALPVELLGMNAQSMCEYIEFVADRLLVQLG-QPKYFNARNPFEFMNN-ISL 283 Query: 330 KKEKNFFETRVTEYQQ 345 + + NFFE RV EY++ Sbjct: 284 EGKTNFFEKRVGEYKR 299 >gi|289177076|ref|NP_001165949.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 3 [Homo sapiens] gi|55631160|ref|XP_528204.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B isoform 3 [Pan troglodytes] gi|42794058|dbj|BAD11774.1| p53-inducible ribonucleotide reductase small subunit 2 long form [Homo sapiens] gi|119612246|gb|EAW91840.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_a [Homo sapiens] Length = 299 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 145/293 (49%), Gaps = 28/293 (9%) Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Sbjct: 16 EVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 72 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E VHS + +I + D + LFN +P + KA+WAL++ S Sbjct: 73 GFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS--- 129 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 T G + V + EG++F FA I L + M G+ + I RDE LH Sbjct: 130 TFGER----------VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLH 179 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 +F + +L K +++ R ++ +A +E + E +P G +G+N +Q Sbjct: 180 CDFACLMFQ-------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQ 232 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 Y++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 233 YIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 283 >gi|308485547|ref|XP_003104972.1| hypothetical protein CRE_24501 [Caenorhabditis remanei] gi|308257293|gb|EFP01246.1| hypothetical protein CRE_24501 [Caenorhabditis remanei] Length = 323 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 91/317 (28%), Positives = 154/317 (48%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++ W Y A + W EV + D+A W+ L+ DE+ I L FFA+S+ Sbjct: 16 IYPIEHHDIWSFYKKALASFWTTEEVDVGKDMADWER---LSADEKKFISTVLAFFAASD 72 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS T+ +I + DE E LF+ + Sbjct: 73 GIVVENLCSRFANEVKIVEARFFYGFQIAVENIHSETYAKLIETYIKDERERLVLFDAIK 132 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 I KA+WAL++ ++SP F L F V EG++F FA I Sbjct: 133 NFEFIKKKADWALRWISDMTSP------------FAHRLVAFAAV-EGIFFSGSFASIFW 179 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + + G+ + I RDE LH +F + +I ++ P ++ ++ EA Sbjct: 180 LKKRGLLPGLTHSNELISRDEGLHRDFACLLFTKI-VDKPS------REIVCEIVDEAVT 232 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E+ + + +P +G+N QY++++A+ ++G E L+ +T NPF +M E I + Sbjct: 233 IELEFLDQALPVNVIGMNYTLMSQYIKYVADHLLEELGFEKLY-HTINPFDFM-ENISID 290 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV+EYQ+ Sbjct: 291 GKTNFFEKRVSEYQRSG 307 >gi|312599293|gb|ADQ91316.1| hypothetical protein BpV2_149c [Bathycoccus sp. RCC1105 virus BpV2] Length = 387 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 88/318 (27%), Positives = 151/318 (47%), Gaps = 29/318 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ W Y A ++W E+ D+ W NGL+D+E+ IK L FFA S+ Sbjct: 85 VFPIKHENLWSLYKKAQMSNWTAEEIDFSKDMDDW---NGLSDNEKHFIKYILAFFAGSD 141 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYR 150 +V NI + E R + QA E VH T+ +I ++ +LF + Sbjct: 142 GIVFENINNNFADEIQLTEARSFYAYQAHNEMVHGETYSKLIDKYIKSSTEKNQLFEAIQ 201 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ D + F + L F V EG++F F I Sbjct: 202 TIPCIERKAKWAMKWF-------------DKKRPFAERLLAFACV-EGIFFSGSFCAIYW 247 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + + G+ + I RDE +H F +++ N +K K + ++ +A Sbjct: 248 LKKRGLLPGLCFSNELISRDEGMHQEFAVELFNMLK-------NKPSGEIIEEIIRDAVT 300 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ +Y++++A+R Q+G + ++ T+NPF +M E I L Sbjct: 301 IEKEFITDALPCSLIGMNSSKMSEYIEYVADRLSKQVGHDKIWN-TKNPFDFM-ENISLD 358 Query: 331 KEKNFFETRVTEYQQGAE 348 + NFFE RV +Y + E Sbjct: 359 GKTNFFEKRVGDYGKMDE 376 >gi|296227442|ref|XP_002759378.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like isoform 2 [Callithrix jacchus] Length = 299 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 144/293 (49%), Gaps = 28/293 (9%) Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Sbjct: 16 EVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 72 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E VHS + +I + D + LFN +P + KA+WAL++ S Sbjct: 73 GFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS--- 129 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 T G + V + EG++F FA I L + M G+ + I RDE LH Sbjct: 130 TFGER----------VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLH 179 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 +F + +L K +++ R ++ +A +E + E +P G +G+N +Q Sbjct: 180 CDFACLMFQ-------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQ 232 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 Y++F+A+R ++G F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 233 YIEFVADRLLVELGFSKFFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 283 >gi|71648907|ref|XP_813233.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi strain CL Brener] gi|70878098|gb|EAN91382.1| ribonucleoside-diphosphate reductase small chain, putative [Trypanosoma cruzi] Length = 337 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 94/327 (28%), Positives = 160/327 (48%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+KY W+KY + ++ W E+ + DLA W+ N + E+ IK Sbjct: 19 LLRENPDRYVIFPIKYHDIWKKYKESESSIWTVEEIDLSSDLADWEKMN---EGEKFFIK 75 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E VHS T+ ++ + D Sbjct: 76 HVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDTYITDTE 135 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E + + +P I KANWA+++ ++ SS F + L F V EG++ Sbjct: 136 EKDRMLHAISTIPCIQKKANWAIRWIRSSSS-------------FAERLVAFAAV-EGIF 181 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F + L + M G+ + I RDE LH +F + EN ++ K +++ Sbjct: 182 FSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFAC-----LLYEN-YIVNKLPKER 235 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R ++ A +E + + +P +G+NA Y++F+A+R +G E + ++NPF Sbjct: 236 IREIICSAVDIEREFICDAIPVRLLGMNADLMSTYIEFVADRLLVALGNERHYN-SKNPF 294 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M E+I L+ + NFFE +V EYQ+ Sbjct: 295 DFM-EMISLQGKTNFFEKKVGEYQKAG 320 >gi|27769295|gb|AAH42468.1| Similar to ribonucleotide reductase M2 polypeptide [Homo sapiens] Length = 285 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 145/293 (49%), Gaps = 28/293 (9%) Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Sbjct: 2 EVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFY 58 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E VHS + +I + D + LFN +P + KA+WAL++ S Sbjct: 59 GFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS--- 115 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 T G + V + EG++F FA I L + M G+ + I RDE LH Sbjct: 116 TFGER----------VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLH 165 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 +F + +L K +++ R ++ +A +E + E +P G +G+N +Q Sbjct: 166 CDFACLMFQ-------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQ 218 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 Y++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 219 YIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 269 >gi|73852496|ref|YP_293780.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi virus 86] gi|72415212|emb|CAI65449.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi virus 86] Length = 325 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 151/317 (47%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ + +E+Y A + W +E+ + D W LT++E+ IK L FFA+++ Sbjct: 15 LFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDWPK---LTENEQHFIKYILAFFATAD 71 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E VH+ T+ ++ SL D+ E LF R Sbjct: 72 GIVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVEDKDEQRNLFRAIR 131 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + SI KA+WAL++ ++ F + L F VV EG++F F I Sbjct: 132 TIQSIKNKADWALKWMNN-------------ERSFAERLIAFAVV-EGIFFSGAFCAIFW 177 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + H+ K + ++ A Sbjct: 178 LKKRAIMPGLTFSNELISRDEGLHTDFA------CMLYRNHIIHKLPYETVLDIITNAVE 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 LE + E +P +G+NA S Y++F+A+R +G + NPF WM E+I L+ Sbjct: 232 LERLFICEALPVSLIGINAESMSTYIKFVADRLLISLGYAKHYNVV-NPFEWM-ELISLE 289 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ Sbjct: 290 GKTNFFEKRVGEYQKAG 306 >gi|164659270|ref|XP_001730759.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966] gi|159104657|gb|EDP43545.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966] Length = 397 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 96/323 (29%), Positives = 150/323 (46%), Gaps = 29/323 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + DL W N +TD ER + L FFA+S+ Sbjct: 83 LFPIRYHEIWQMYKKAEASFWTAEEIDLSKDLYDWD--NRMTDPERHFVSHVLAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMY 149 +V N+V + E R + Q E +HS T+ +I + + E E LFN Sbjct: 141 GIVNENLVERFSAEVQATEARCFYGFQIMMENIHSETYSLLIDTY-IREPERRDFLFNAI 199 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 VP + KA+WAL++ D F + L F V EG++F FA I Sbjct: 200 ETVPVVKQKADWALRWIS------------DHRASFSERLVAFAAV-EGIFFSGSFASIF 246 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 L + M G++ + I RDE LH +F + + HL + ++ EA Sbjct: 247 WLKKRGLMPGLSFSNELISRDEGLHTDFACLLFS-------HLKKRAHPDTVNRIITEAV 299 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E + + +P +G+NA QY++F+A+R +G P + NPF +M E I L Sbjct: 300 DIEQDFLTDALPVSLIGMNARLMCQYIEFVADRLLVALG-NPKHYNSTNPFDFM-ENISL 357 Query: 330 KKEKNFFETRVTEYQQGAELKWD 352 + + NFFE RV +Y + + D Sbjct: 358 QGKSNFFERRVGDYAKAGVARAD 380 >gi|62637405|ref|YP_227403.1| Ribonucleotide reductase small subunit [Deerpox virus W-848-83] gi|115503265|gb|ABI99183.1| ribonucleotide reductase small subunit [Deerpox virus W-848-83] Length = 321 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 94/315 (29%), Positives = 148/315 (46%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DL WK LTD+ER IK L FFA+S+ Sbjct: 14 IFPIIYNDIWIMYKKAIASFWTTEEVDLSKDLLDWKK---LTDNERYFIKNILAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ Y + E R + Q E +HS + +I + D E L Sbjct: 71 GIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITDVDEKNHLLKAID 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + I KA WA ++ D + + + L F V EG++F FA I Sbjct: 131 TIDCIKEKAKWAEKWIL------------DKESTYGERLVAFAAV-EGIFFSGAFASIFW 177 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + Q+ + P + ++ EA Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKQL-LYPPS------TSRIINIIVEAVS 230 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E ++ + +P +G+N QY++F+A+R ++G +FK +ENPF +M E I L+ Sbjct: 231 IEKSFLTKALPVKLIGMNCELMCQYIEFVADRLLSELGCNKIFK-SENPFDFM-ESISLE 288 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV++YQ+ Sbjct: 289 GKTNFFEKRVSDYQK 303 >gi|302682638|ref|XP_003031000.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8] gi|300104692|gb|EFI96097.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8] Length = 362 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 91/317 (28%), Positives = 150/317 (47%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W Y + W E+ + DL W+ + + D+ER I L FFA+S+ Sbjct: 55 LFPIQYHEIWAMYKKEEASFWTAEEMDLSKDLHDWEER--MNDNERHFISHVLAFFAASD 112 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + PE R + Q E VHS T+ +I + D + L N Sbjct: 113 GIVNENLLTRFCGEVKVPEARCFYGFQIMMENVHSETYSLLIDTYIRDPAQRTFLLNAVE 172 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA WAL++ D F L F V EG++F FA I Sbjct: 173 TIPCVRKKAEWALRWIA------------DRRSSFAIRLVAFSAV-EGIFFSGSFASIFW 219 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE +H +F ++ ++ PH E ++ EA Sbjct: 220 LKKRGLMPGLTFSNELITRDEGMHTDFACLLLTHMR-RRPHPEVIEM------IIKEAVA 272 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G + ++ T NPF +M ++I L+ Sbjct: 273 IEKEFLTDALPVSLIGMNADLMCQYIEFVADRLLVALGNDKVWNAT-NPFDFM-DMISLQ 330 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV++Y+ A Sbjct: 331 GKTNFFEKRVSDYKIAA 347 >gi|312381384|gb|EFR27142.1| hypothetical protein AND_06323 [Anopheles darlingi] Length = 390 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 151/315 (47%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W S L ER I L FFA+S+ Sbjct: 83 IFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWDS---LKPSERHFISHVLAFFAASD 139 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 140 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDPKERDFLFNAIE 199 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA+ + +SS G + V + EG++F FA I Sbjct: 200 TLPCVKRKADWAMNW---ISSKKANYGER----------IVAFAAVEGIFFSGSFAAIFW 246 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + +L K +++ ++ +A + Sbjct: 247 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------YLVQKPSRKRVTDIIRDAVM 299 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R ++G E ++ T+NPF +M E I L+ Sbjct: 300 IEQEFLTKALPVDMLGMNCELMSQYIEFVADRLLVELGCEKVYN-TKNPFSFM-EFISLE 357 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 358 GKTNFFEKKVGEYQK 372 >gi|283481249|emb|CAZ69365.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi virus 99B1] Length = 325 Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 151/317 (47%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ + +E+Y A + W +E+ + D W LT++E+ IK L FFA+++ Sbjct: 15 LFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDWPK---LTENEQHFIKYILAFFATAD 71 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE R + Q E VH+ T+ ++ SL D+ E LF R Sbjct: 72 GVVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVEDKDEQRNLFRAIR 131 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + SI KA+WAL++ ++ F + L F VV EG++F F I Sbjct: 132 TIQSIKNKADWALKWMNN-------------ERSFAERLIAFAVV-EGIFFSGAFCAIFW 177 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + H+ K + ++ A Sbjct: 178 LKKRAIMPGLTFSNELISRDEGLHTDFA------CMLYRNHIIHKLPYETVLDIITNAVE 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 LE + E +P +G+NA S Y++F+A+R +G + NPF WM E+I L+ Sbjct: 232 LERLFICEALPVSLIGINAESMSTYIKFVADRLLISLGYAKHYNVV-NPFEWM-ELISLE 289 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ Sbjct: 290 GKTNFFEKRVGEYQKAG 306 >gi|311748425|ref|ZP_07722210.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus sp. PR1] gi|126576938|gb|EAZ81186.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus sp. PR1] Length = 326 Score = 132 bits (332), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 90/325 (27%), Positives = 151/325 (46%), Gaps = 39/325 (12%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ WE Y A + W E+ + D+ WKS L D ER I L FFA+S+ Sbjct: 16 LFPIQHADIWEYYKKAEASFWTAEEIDLGQDMVDWKS---LNDGERHFISHVLAFFAASD 72 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E + + Q E +HS T+ +I + D E LFN Sbjct: 73 GIVNENLAEHFVAEVQYTEAKFFYGFQIAMENIHSETYSLLIDTYIKDPSERDKLFNAIE 132 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KA+WAL++ D Q+ + + EG++F F I Sbjct: 133 HIDCVKKKADWALRWI---------------DNGNFQERLIAFAAVEGIFFSGSFCSIFW 177 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-----QQKSRTML 265 L + M G+ + I RDE LH +F HL+TK ++ R ++ Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFAC-----------HLYTKHVVNPLPKETVREII 226 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 +A +E + + +P +G+N+ QY++F+A+R ++ E ++ T NPF +M + Sbjct: 227 IDAVKIEKEFVTDALPVRLIGMNSDLMCQYIEFVADRLLLELDCEKVWNST-NPFDFM-D 284 Query: 326 VIDLKKEKNFFETRVTEYQQGAELK 350 +I L+ + NFFE RV +YQ+ +K Sbjct: 285 MISLQGKTNFFEKRVGDYQKAGVMK 309 >gi|292658982|gb|ADE34370.1| ribonucleotide reductase small chain [Turbot reddish body iridovirus] Length = 312 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 90/306 (29%), Positives = 146/306 (47%), Gaps = 27/306 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W Y A + W EV + D+ W K LT+ ER + L FFA ++ +V +N+V Sbjct: 14 WAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71 Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159 + L + PE R + + E +H+ + +I +L E + LF+ ++P + AKA Sbjct: 72 NFAKELDHIPEARAFYGFRVAMENIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 WA Q+ P T L F V EG+ F FA I L + + M G Sbjct: 132 QWAAQWLNATHKPIATR------------LLAFAAV-EGVMFSGSFAAIFWLKKRSLMPG 178 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +A + I RDE LH +F + Q+ K Q+ + ++ +A +E A+ E Sbjct: 179 LAFSNELISRDEGLHCDFACMLFRQMA-------NKPSQEDAHQIISDAVDIETAFFREA 231 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 + +G+N+ S Y+QF+A+R +G ++ NPF +M I ++ + NFFE R Sbjct: 232 LKTPLLGMNSDSMRLYIQFVADRLLDALGYAKMYN-VANPFDFMDN-ISIEGKTNFFERR 289 Query: 340 VTEYQQ 345 V+EYQ+ Sbjct: 290 VSEYQR 295 >gi|74025550|ref|XP_829341.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834727|gb|EAN80229.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|261335315|emb|CBH18309.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 91/327 (27%), Positives = 156/327 (47%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER IK Sbjct: 19 LLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---LDDGERHFIK 75 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + +D Sbjct: 76 HVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPD 135 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E L + R +P I KA WA+++ S SF T V + EG++ Sbjct: 136 EKQRLLHAIRTIPCIEKKAKWAIEWIG--SQTSFPTR------------LVAFAAVEGIF 181 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ K + + Sbjct: 182 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEK------YIVNKLPRDR 235 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++NPF Sbjct: 236 VLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SKNPF 294 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M ++I L+ + NFFE +V EYQ+ Sbjct: 295 DFM-DMISLQGKTNFFEKKVGEYQKAG 320 >gi|326797773|ref|YP_004315592.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21] gi|326548537|gb|ADZ76922.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21] Length = 323 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 92/331 (27%), Positives = 157/331 (47%), Gaps = 30/331 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L D +LP+ Y W+ Y + W E+ + DL W + L D ER Sbjct: 4 ENEVLLRENKDRFVILPINYPAIWDMYKKHEASFWTAEEIDLSGDLKDWAN---LNDGER 60 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FFA+S+ +V N+ + + PE R + Q E +HS T+ +I + Sbjct: 61 HFISHVLAFFAASDGIVNENLAINFMSEVQLPEARSFYGFQIAMENIHSETYALLIDTYV 120 Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D E LF+ V + KA WAL++ + S F + L F V Sbjct: 121 KDPVEKDRLFHAIETVECVKKKAEWALRWIENGS--------------FAERLVAFAAV- 165 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++F F I L + M G+ + I RDE LH F + + ++ + P Sbjct: 166 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLYSMLEAKLP------ 219 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +++ + ++ +A +E + + +P +G+NA +QY++F+A+R ++G + T Sbjct: 220 -KERVQEIIIDAVEIEKEFITDALPVKLIGMNADLMKQYIEFVADRWLVELGNSKYYNAT 278 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 NPF +M E+I L+ + NFFE RV +YQ+ Sbjct: 279 -NPFDFM-ELISLQGKTNFFEKRVGDYQKSG 307 >gi|225320685|dbj|BAH29738.1| ribonucleoside-diphosphate reductase subunit M2 [Dicyema japonicum] Length = 337 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 152/315 (48%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y + Y A + W EV + D+ W N L DE+ I L FFA+S+ Sbjct: 27 LFPIEYPDIFTMYKQALASIWTVEEVDLSKDIKHW---NILNSDEKRFISHVLAFFAASD 83 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V N+V + E R + Q E +HS + +I + D + ++F+ Sbjct: 84 GIVNENLVQRFSVEVQVSEARSFYGLQIAVENIHSEMYSLLIDTYISDFQEKDKMFSAIE 143 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA+++ ++ S F + L F V EG++F FA I Sbjct: 144 TMPFVKKKADWAIRWIESTES------------HFSERLVAFAAV-EGIFFSGSFASIFW 190 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + +K + P + + ++ EA + Sbjct: 191 LKKRGVMPGLTYSNELISRDEGLHTDFACLLYHHLKKKLP-------RDRILQIITEAVV 243 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 LE + E +P +G+N QY++F+A+R ++G + + Y +NPF +M E I L Sbjct: 244 LEKEFLTEALPVALIGMNVNLMSQYIEFVADRLIIELGYDKHY-YAQNPFDFM-ENISLS 301 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 302 GKTNFFEKRVGEYQR 316 >gi|2465173|emb|CAA71741.1| ribonucleotide reductase (Class I) [Trypanosoma brucei brucei] Length = 337 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 91/327 (27%), Positives = 156/327 (47%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER IK Sbjct: 19 LLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVEEIDLGNDMTDWEK---LDDGERHFIK 75 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + +D Sbjct: 76 HVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPD 135 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E L + R +P I KA WA+++ S SF T V + EG++ Sbjct: 136 EKQRLLHAIRTIPCIEKKAKWAIEWIG--SQTSFPTR------------LVAFAAVEGIF 181 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ K + + Sbjct: 182 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEK------YIVNKLPRDR 235 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++NPF Sbjct: 236 VLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SKNPF 294 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M ++I L+ + NFFE +V EYQ+ Sbjct: 295 DFM-DMISLQGKTNFFEKKVGEYQKAG 320 >gi|3914640|sp|O15910|RIR2_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|2411479|gb|AAB70705.1| ribonucleotide reductase small subunit [Trypanosoma brucei] gi|261335314|emb|CBH18308.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 91/327 (27%), Positives = 156/327 (47%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER IK Sbjct: 19 LLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---LDDGERHFIK 75 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + +D Sbjct: 76 HVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPD 135 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E L + R +P I KA WA+++ S SF T V + EG++ Sbjct: 136 EKQRLLHAIRTIPCIEKKAKWAIEWIG--SQTSFPTR------------LVAFAAVEGIF 181 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ K + + Sbjct: 182 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEK------YIVNKLPRDR 235 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++NPF Sbjct: 236 VLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SKNPF 294 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M ++I L+ + NFFE +V EYQ+ Sbjct: 295 DFM-DMISLQGKTNFFEKKVGEYQKAG 320 >gi|296282225|ref|ZP_06860223.1| ribonucleotide-diphosphate reductase subunit beta [Citromicrobium bathyomarinum JL354] Length = 354 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 83/313 (26%), Positives = 154/313 (49%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D W K L++ ER ++ + FF ++ Sbjct: 12 PFEYPWAYDFWKRQQQVHWMPEEVPLGEDCRDWAQK--LSEHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + R E + L + E +H + +++ ++G+ E E + M+ E + Sbjct: 70 VQDCYHEKYGRVFKPTEIKMMLASFSNMETIHIAAYSHLLDTIGMPESE-YGMFLEYEEM 128 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K ++ Q+ D D++ + L F EGM + FA +++ R N Sbjct: 129 KDKHDYLQQFG------------VDTDEDIARTLAAFGGFTEGMQLFASFAMLMNFPRFN 176 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH I + ++ + +TK ++ + ++ LE + Sbjct: 177 KMKGMGQIVSWSVRDESLHCEGIIRLFHEF-VRERDCYTKAVKEDIIDICQKSVRLEDNF 235 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G V G+ A ++Y+++IA+ R Q+GL+P++ E+P PW++ +++ + N Sbjct: 236 IDLAFEMGPVSGMTAKEIKKYIRYIADWRLGQLGLQPIYMIDEHPLPWLTPLLNGVEHAN 295 Query: 335 FFETRVTEYQQGA 347 FFE R TEY +GA Sbjct: 296 FFEQRATEYSKGA 308 >gi|50237508|gb|AAT71841.1| ribonucleotide reductase small chain [Rock bream iridovirus] Length = 312 Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 90/306 (29%), Positives = 146/306 (47%), Gaps = 27/306 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W Y A + W EV + D+ W K LT+ ER + L FFA ++ +V +N+V Sbjct: 14 WAMYKKAVASFWTVEEVDLSTDVRHWTDK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71 Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159 + L + PE R + Q + +H+ + +I +L E + LF+ ++P + AKA Sbjct: 72 NFAKELDHIPEARAFYGFQVAMKNIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 WA Q+ P T L F V EG+ F FA I L + + M G Sbjct: 132 QWAAQWLNATHKPIATR------------LLAFAAV-EGVMFSGSFAAIFWLKKRSLMPG 178 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +A + I RDE LH +F + Q+ K Q + ++ +A +E A+ E Sbjct: 179 LAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHEIISDAVDIETAFFREA 231 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 + +G+N+ S + Y+QF+A+R +G ++ NPF +M I ++ + NFFE R Sbjct: 232 LKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYN-VGNPFDFMDN-ISIEGKTNFFERR 289 Query: 340 VTEYQQ 345 V+EYQ+ Sbjct: 290 VSEYQR 295 >gi|228861726|ref|YP_002854746.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus] gi|226425174|gb|ACO53586.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus] Length = 339 Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 95/324 (29%), Positives = 162/324 (50%), Gaps = 20/324 (6%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP+++ W+ Y +A + W EV + D W++K L +DER +K L FFAS++ Sbjct: 10 ILPIQHANLWKAYKTALDCVWKVEEVDLTKDWEDWQNK--LNEDERHFLKHILAFFASAD 67 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V N++ + ++ E R + +Q F E VHS + +I DE E L N + Sbjct: 68 SIVNINLIDYVRGKVAELEARYFYDQQIFIENVHSEMYSLLIFEYIKDEQEKDTLLNAFN 127 Query: 151 EVPSITAKANWALQYTQT------LSSPSFTTGTKDADQEFLQDLFVFYVVF---EGMWF 201 ++ + KA WAL++T++ L +P+ + ++ +L V V F EG++F Sbjct: 128 DIECVRKKAQWALKWTESAWWQDWLVNPATRWCNRLMGKQTPSELAVRMVAFAIVEGVFF 187 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 FA I + M G+ + I RDE LH NF N+ E+ L + ++ Sbjct: 188 SGSFAAIFYIKTKGVMPGLTFSNELISRDEGLHTNFACLYYNEYIPEHDKLSS----ERI 243 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 M EA +E + +P +G+N S +Y++F+A+R + +P NPF Sbjct: 244 LDMFIEAVEIEKEFFKTALPCSLLGMNTESMCRYIEFVADRLLVDLN-QPKHFMASNPFN 302 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQ 345 +M+ I ++ + NFFE RV EY++ Sbjct: 303 FMTN-ISMEGKTNFFERRVGEYRR 325 >gi|298707394|emb|CBJ30029.1| conserved unknown protein [Ectocarpus siliculosus] Length = 380 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/321 (28%), Positives = 147/321 (45%), Gaps = 36/321 (11%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++ W+ Y A W E+ + D W+ GLTDDER +K L FFA+S+ Sbjct: 73 LFPIQDNEVWQMYKKAEACFWTAEELDLAHDHKDWE---GLTDDERHFVKHVLAFFAASD 129 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 130 GIVNENLASNFSSEIQLSEARCFYGFQIAIENIHSEVYSLLIDTYVKDAAEKTHLFNAME 189 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP + KA WAL++ P + + + L F V EG++F F + Sbjct: 190 TVPCVRRKARWALRWCD----PKLAS--------YAERLVAFAAV-EGIFFSGSFCAVFW 236 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGI----DVINQIKIENPHLWTKEFQQKSRTMLH 266 L + M G+ + I RDE LH +F ++N++ +E + ++ Sbjct: 237 LKKRGLMPGLCFSNELISRDEGLHTDFACLLFRKLVNKLPVE-----------RVAEIIC 285 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 +A +E + +P +G+N+ QY++F A+R ++G E + T NPF WM E+ Sbjct: 286 DAVDIEKEFITSALPVELIGMNSALMRQYIEFCADRLLMELGCEKKYNST-NPFDWM-EM 343 Query: 327 IDLKKEKNFFETRVTEYQQGA 347 I L+ + NFFE RV EY + Sbjct: 344 ISLQGKTNFFEKRVGEYSKSG 364 >gi|87198296|ref|YP_495553.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium aromaticivorans DSM 12444] gi|87133977|gb|ABD24719.1| Ribonucleoside-diphosphate reductase [Novosphingobium aromaticivorans DSM 12444] Length = 351 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/325 (27%), Positives = 159/325 (48%), Gaps = 20/325 (6%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L AR N P +Y WA+E + HWMP EVP+ +D W K +++ ER ++ Sbjct: 3 LLEAR---NTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQK--ISEHERNLLT 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 + FF ++ V N R E + L + E VH + +++ ++G+ E Sbjct: 58 QIFRFFTQADVEVQNCYHEQYGRVFKPTEVKMMLAAFSNMETVHIAAYSHLLDTIGMPES 117 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E + M+ E + AK + Y QT + D++ + L +F EG+ + Sbjct: 118 E-YGMFLEYEELKAKHD----YLQTFGV--------ETDEDIARTLAMFGGFTEGLQLFA 164 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 FA +++ R NKM G+ + + +RDESLH GI + ++ TK ++ Sbjct: 165 SFAMLMNFPRFNKMKGMGQIVSWSVRDESLHCE-GITRLFHAFVKERGCLTKAVKEDIID 223 Query: 264 MLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 + LE A+ +G V G++A ++Y+++IA+ R Q+GL ++ ++P PW Sbjct: 224 CCQKTVRLEDAFIDLAFEQGPVPGMSAKEIKRYIRYIADWRLSQLGLPAIYMIEDHPLPW 283 Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA 347 ++ +++ + NFFETR TEY + A Sbjct: 284 LAPLLNGVEHANFFETRATEYSKAA 308 >gi|323453718|gb|EGB09589.1| hypothetical protein AURANDRAFT_60022 [Aureococcus anophagefferens] Length = 393 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 149/316 (47%), Gaps = 27/316 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K W Y A + W EV + D W+ L + ER + R L FFA+S+ Sbjct: 84 LFPIKDAGLWAMYKRAEASFWTAEEVDLGQDKQHWEQ---LDEGERYFLSRVLAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE-- 151 +V N+V + ++ PE R + Q E VH + ++ + D GE + R Sbjct: 141 GIVLENLVERFAQEVTLPEARFFYAFQGAIEGVHQEMYSLLLETYVEDPGEREALTRAHD 200 Query: 152 -VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + AKA+WA+++T + D + L F V EG++F F I Sbjct: 201 LMPCVKAKADWAMKWTAS-------------DAPYAARLLAFAAV-EGVFFSGSFCAIFW 246 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + + G+ + I RDE LH +F + +++ HL + ++ ++ EA Sbjct: 247 LRKRGILPGLGFANELISRDEGLHCDFACALYSRLP---GHLRLSD--AEATAIISEAVD 301 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ + + +P VG+NA Y++F+A+R +G P NPF +M E+I ++ Sbjct: 302 TEVDFVTDALPVSLVGMNAKLMTDYVKFVADRLLASLG-HPKIYGAANPFDFM-ELISMQ 359 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE RV EYQ+ Sbjct: 360 GKTNFFEKRVAEYQKA 375 >gi|308809930|ref|XP_003082274.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus tauri] gi|116060742|emb|CAL57220.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus tauri] Length = 382 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/331 (29%), Positives = 150/331 (45%), Gaps = 37/331 (11%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D L P+K+ WE Y A + W EV + D W++ L ++E+ + Sbjct: 65 LLRDNPDRFCLFPIKHPRVWEMYKKAEASFWTAEEVDLTYDYKDWQT---LNENEKHFVS 121 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFASS+ +V N+ + PE R + Q E +HS + ++ + D Sbjct: 122 HVLAFFASSDGIVLENLCSRFMSDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKDPK 181 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + ELF VP++ KA+WAL + + D F + L F V EG++ Sbjct: 182 KKSELFRAIHTVPTVAMKADWALHWIGS-------------DASFPERLVGFACV-EGIF 227 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + ++NP Sbjct: 228 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYGM--LQNP---------L 276 Query: 261 SRTMLH----EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 S LH +A +E + + + VG+NA Y++F+A+R Q+G LF Sbjct: 277 SEATLHHIVGDAVKIEKEFVCDALSCSLVGMNADMMSTYIEFVADRLLIQLGASKLFNAV 336 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 NPF WM E+I L+ + NFFE RV +YQ+ Sbjct: 337 -NPFDWM-ELISLQGKANFFEHRVDQYQKAG 365 >gi|114568952|ref|YP_755632.1| ribonucleotide-diphosphate reductase subunit beta [Maricaulis maris MCS10] gi|114339414|gb|ABI64694.1| Ribonucleoside-diphosphate reductase [Maricaulis maris MCS10] Length = 345 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/313 (27%), Positives = 152/313 (48%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D W +K L D ER ++ + FF S+ Sbjct: 20 PFRYPWAYDFWKKQQQVHWMPEEVPLGEDCKDWATK--LNDGERNLLTQIFRFFTQSDVE 77 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L + E +H + ++ ++G+ + E F+ + E ++ Sbjct: 78 VNDNYMERYSRVFRPTEVKMMLASFSNMETIHIAAYALLLETIGMPDSE-FSAFMEYQAM 136 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K ++ ++ G +D + + L+ + +F EG+ + FA +++ R N Sbjct: 137 ADKHDYMQRF-----------GVED-EADILRTVAMFGAFTEGLQLFASFAMLMNFPRFN 184 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH I + + E L T+E + LE + Sbjct: 185 KMKGMGQIVTWSIRDESLHCEGMIKLFHAFAEETGAL-TQEVKDDITECCRTVVGLEDKF 243 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G V G+ + Y+++IA+ R Q+GL ++ E+P PW+SE+++ + N Sbjct: 244 IDLAFEAGDVEGMTPDDIKTYIRYIADWRLGQLGLPKIYGVKEHPLPWLSEILNGVEHAN 303 Query: 335 FFETRVTEYQQGA 347 FFE R TEY +GA Sbjct: 304 FFEARATEYSKGA 316 >gi|291165654|gb|EFE27703.1| ribonucleoside-diphosphate reductase, beta subunit [Filifactor alocis ATCC 35896] Length = 348 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/344 (27%), Positives = 168/344 (48%), Gaps = 21/344 (6%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + +RM+N + ++N +KY W + Y A NN W+P E+ + D+ K L Sbjct: 17 IELSKRRMINGNTTNLNDFNNMKYTWVSDWYRHAMNNFWIPEEINLTQDI---KDYRNLE 73 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +E+ + L F +SL N+ + ++ E L QA++EA+HS ++ YI+ Sbjct: 74 IEEKEAYDKILSFLIFLDSLQTANLP-NVGEFITANEVNLCLTIQAYQEAIHSQSYGYIL 132 Query: 136 TSLGLDE--GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 S+ E E+ +++ P + A+ + QY + + K + Sbjct: 133 DSICSPEERTEILYQWKDDPFLLARNKFIGDQYNDFYYNRTKYNLVKTVIANY------- 185 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I ++K E P L Sbjct: 186 --ILEGIYFYSGFMFFYALGRNGKMPGTVQEIRYINRDENSHLWLFRSIILELKKEEPEL 243 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 +T E + R M+ + EI +A+ + GL E Y++++ N RC +G EP+ Sbjct: 244 FTPENIEVFRNMIRQGVEEEIKWANYVIGDHIKGLTMQMVEDYLKYLGNLRCRGLGFEPI 303 Query: 313 FK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 ++ Y P W+SE D K +FFE +V+ Y + + ++ D Sbjct: 304 YEGYQREPESMSWVSEYSDPNAIKTDFFEGKVSAYAKSSVIEDD 347 >gi|325663145|ref|ZP_08151595.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 4_1_37FAA] gi|325470599|gb|EGC73829.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 4_1_37FAA] Length = 347 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 176/346 (50%), Gaps = 23/346 (6%) Query: 12 AGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 AG+ V + +R++ + ++N +KY W + Y A NN W+P E+ + D+ +++ Sbjct: 13 AGDTEVRL--RRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVRDYRT 70 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L ER + L F +S+ N+ I +++ E L QAF+EAVHS + Sbjct: 71 ---LPAPERRAYDKILSFLVFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAVHSQS 126 Query: 131 FQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQ 187 + Y++ ++ + E+ +++ P + ++ + Y + S + F++ Sbjct: 127 YSYMLDTICEPQERNEVLYQWKDDPHLLSRNEFIGNLYNEFQREKSL--------EAFVR 178 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + Y++ EG++FY+GF +LGR KM G ++ +YI RDE+ HL +++ +++ Sbjct: 179 TMIANYIL-EGIYFYSGFMFFYNLGRNQKMTGSVQEIRYINRDENTHLWLFTNILRELRK 237 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P L+++E +++ R M+ E EIA+ H + GL+ Y++++ N RC + Sbjct: 238 ELPELFSEEKEKEYRQMIREGCEQEIAWGHYVIGDAVSGLSCDMITDYVKYLGNLRCKNL 297 Query: 308 GLEPLFKYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 GL P+++ E W+S+ + K +FFE + T Y + + L Sbjct: 298 GLAPIYEGHEKEPESMGWVSQFSNANMIKTDFFEAKSTAYAKSSAL 343 >gi|284039889|ref|YP_003389819.1| ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74] gi|283819182|gb|ADB41020.1| Ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74] Length = 349 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 29/316 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K+ WE Y + + W E+ + D+ W N L D ER I L FFA+S+ Sbjct: 20 LFPIKHWDIWEYYKTHEASFWTAEEIDLGQDMKDW---NSLNDGERHFISHVLAFFAASD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + E + + Q E +HS T+ +I + D E L N Sbjct: 77 GIVNENLAVNFLSEVQYAEAKCFYGFQVMMENIHSETYSLLIDTYIKDPVEKDRLLNAID 136 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA WAL++ S F + L F VV EG++F F I Sbjct: 137 TIPCVQKKAEWALRWIDNGS--------------FAERLIAFAVV-EGIFFSGSFCSIYW 181 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + H+ K + + ++ A Sbjct: 182 LKKRGMMPGLTFSNELISRDEGLHRDFA------CMLYTDHIVNKLPESQIYDIIRNAVE 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA +QY+ F+A+ +GL ++ NPF +M ++I L+ Sbjct: 236 IEQEFVADALPVSLIGMNAELMKQYIAFVADHLLVTLGLRKMYN-VANPFDFM-DMISLQ 293 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE RV EYQ+G Sbjct: 294 GKTNFFEKRVGEYQRG 309 >gi|131840053|ref|YP_001096062.1| ORF23 [Cyprinid herpesvirus 3] gi|84181618|gb|ABC55221.1| hypothetical protein [Cyprinid herpesvirus 3] gi|109706628|gb|ABG42854.1| ORF23 [Cyprinid herpesvirus 3] gi|129560539|dbj|BAF48834.1| ribonucleotide reductase small chain [Cyprinid herpesvirus 3] Length = 335 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 149/305 (48%), Gaps = 27/305 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W Y A ++W E+ + D A W+S L+++E+ +K L FFA+S+ +V N+ Sbjct: 35 WSMYKKAQFSNWTAEEIDLAKDTAGWES---LSENEKFFLKNILAFFAASDGIVNENLAT 91 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159 + + E R + Q E VHS + ++ + LD E LF +P I KA Sbjct: 92 RFMKEVQYFEARCFYGFQIAIENVHSEVYAKLLNTYILDPVERNGLFKAMETMPCIKKKA 151 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 +WAL + + SP T G + V + EG++F FA I L + M G Sbjct: 152 DWALNW---IESPDATFGER----------LVAFTAVEGIFFSGAFASIFWLKQKVSMPG 198 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + + I RDE LH +F + + HL K +++ R ++ EA +E + ++ Sbjct: 199 LTFSNELISRDEGLHRDFACLLFSS------HLRHKPSKERVRAIITEAVEIEKEFLTQS 252 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 +P VG+N +Y+Q++A+ Q+GL L+ T PF +M E I L+ + NFFE R Sbjct: 253 LPVSLVGMNHDLMCKYIQYVADHLLCQMGLSRLYN-TPCPFDFM-ENISLEGKTNFFEKR 310 Query: 340 VTEYQ 344 V +YQ Sbjct: 311 VADYQ 315 >gi|154340038|ref|XP_001565976.1| ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063294|emb|CAM45500.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] Length = 388 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 151/317 (47%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W KY + W E+ + +D+ W + L D ER IK L FFA S+ Sbjct: 80 LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWVA---LNDGERHFIKHVLAFFAGSD 136 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS T+ ++ + D E L + + Sbjct: 137 GIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 196 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ SS SF Q+ + + EG++F F + Sbjct: 197 TIPCIQKKAEWAVRWIG--SSASF------------QERLIGFAAVEGIFFSGSFCALFW 242 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + N H+ K +++ ++ +A Sbjct: 243 LKKRGLMPGLTFSNELISRDEGLHTDFA------CLLYNSHIKHKLPRERVLEIIVDAVN 296 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G E + T+ PF +M E+I L+ Sbjct: 297 IEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEEKHYNATQ-PFDFM-EMISLQ 354 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE +V EYQ+ Sbjct: 355 GKTNFFEKKVGEYQKAG 371 >gi|325119319|emb|CBZ54873.1| hypothetical protein NCLIV_052980 [Neospora caninum Liverpool] Length = 392 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/314 (28%), Positives = 149/314 (47%), Gaps = 23/314 (7%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP+++ WE Y + W E+ + D+ W+S N +E+ IK L FFA+S+ Sbjct: 86 ILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWESLNS---NEKHFIKYVLAFFAASD 142 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +V N+ + PE R + Q E +HS T+ +I DE E ++ V Sbjct: 143 GIVLENLAEKFLSEIQIPEARAFYGFQIAMENIHSETYSLLIDQYIRDEKEKMELFDAVH 202 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 ++ A A A ++ ++ + V + EG+ F F I L + Sbjct: 203 NVKAVAVKAAWAAMWIN-----------NRNCFAERLVGFACVEGILFSGSFCSIFWLKK 251 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 M G+ + I RDE LH +F + +Q+K + P + + M+ EA +E Sbjct: 252 RGLMPGLTFSNELISRDEGLHADFACLLYSQLKNKLP-------DKVVQDMVREAVTVER 304 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 A+ E +P +G+N S QY++F+A+R +G+ +F + NPF WM E+I L+ + Sbjct: 305 AFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKIF-FATNPFDWM-ELISLQGKT 362 Query: 334 NFFETRVTEYQQGA 347 NFFE RV EYQ+ Sbjct: 363 NFFEKRVGEYQKAG 376 >gi|283955349|ref|ZP_06372848.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 414] gi|283793109|gb|EFC31879.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 414] Length = 340 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/311 (27%), Positives = 149/311 (47%), Gaps = 12/311 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S + Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQS 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ + L+ D D L V + EG++FY+GF I +L RA KM Sbjct: 153 KNDFISSIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 +G A+ ++I RDE HL ++IN ++ E P L+ E K M +A LEI + Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336 +G E+Y+ ++ ++R I L+ L+ ++P W+ + +K NFF Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323 Query: 337 ETRVTEYQQGA 347 E++VT Y +G+ Sbjct: 324 ESKVTNYSKGS 334 >gi|56555145|gb|AAV98100.1| RR2 protein [Shrimp white spot syndrome virus] Length = 328 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/328 (27%), Positives = 156/328 (47%), Gaps = 30/328 (9%) Query: 17 VNVDDKRMLNARSDVNQLL--PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + VD + L R + N+ + P+ + WE Y W E+ + D W+ L Sbjct: 26 MQVDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWEK---L 82 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + + Sbjct: 83 TQDEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGEL 142 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I L DE + LFN + P+I K WA+ + Q+ + L +L V Sbjct: 143 IDRLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIV 188 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I + + G+ ++I RDE LH +F ++ + ++ P Sbjct: 189 AFAAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTPS 248 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 +++ ++ EA +E + ++P VG+N QY++F+A++ ++GLE Sbjct: 249 ------RERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEK 302 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETR 339 + T NPFP+M I L+ + NFFE R Sbjct: 303 HYNVT-NPFPFMDN-ISLENKTNFFEKR 328 >gi|170032272|ref|XP_001844006.1| ribonucleoside-diphosphate reductase small chain [Culex quinquefasciatus] gi|167872122|gb|EDS35505.1| ribonucleoside-diphosphate reductase small chain [Culex quinquefasciatus] Length = 391 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 151/315 (47%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W+ L E+ I L FFA+S+ Sbjct: 84 IFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLGDWEK---LKSGEKHFISHVLAFFAASD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + D E LFN Sbjct: 141 GIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRDPKEREYLFNAIE 200 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA+ + +SS G + V + EG++F FA I Sbjct: 201 TLPCVKKKADWAMNW---ISSKHANFGER----------VVAFAAVEGIFFSGSFASIFW 247 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + +L K +++ ++ EA + Sbjct: 248 LKKRGLMPGLTFSNELISRDEGLHTDFACLMFR-------YLVQKPSKERVLEIIREAVV 300 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N QY++F+A+R ++G E ++ T+NPF +M E I L+ Sbjct: 301 IEQEFLTKALPVDLLGMNCELMSQYIEFVADRLLLELGNEKIYN-TKNPFSFM-EFISLE 358 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 359 GKTNFFEKKVGEYQK 373 >gi|74025554|ref|XP_829343.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834729|gb|EAN80231.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] Length = 337 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/327 (27%), Positives = 154/327 (47%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+KY W+KY A +N W + + +D+ W+ L D ER IK Sbjct: 19 LLTENPDRYVIFPIKYPDIWQKYKKARSNFWAMENIYLGNDMTDWEK---LDDGERHFIK 75 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+ + +V N V + PE R + Q E +HS T+ +I + +D Sbjct: 76 HVLAFFAARDGIVLENFVQRFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPD 135 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E L + R +P I KA WA+++ S SF T V + EG++ Sbjct: 136 EKQRLLHAIRTIPCIEKKAKWAIEWIG--SQTSFPTR------------LVAFAAVEGIF 181 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ K + + Sbjct: 182 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEK------YIVNKLPRDR 235 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++NPF Sbjct: 236 VLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SKNPF 294 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M ++I L+ + NFFE +V EYQ+ Sbjct: 295 DFM-DMISLQGKTNFFEKKVGEYQKAG 320 >gi|167760514|ref|ZP_02432641.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704] gi|167661880|gb|EDS06010.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704] Length = 347 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/345 (26%), Positives = 170/345 (49%), Gaps = 21/345 (6%) Query: 12 AGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +G+ +VN +RM+ + ++N +KY W + Y A NN W+P E+ M D+ ++ Sbjct: 13 SGDTQVN--KRRMIGGNTTNLNDFNNMKYDWVSDWYRQAMNNFWIPEEINMGVDIKDYRK 70 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L ER + L F +S+ N+ I +++ E L Q F+EAVHS + Sbjct: 71 ---LPQAERRAYDKILSFLIFLDSIQTANLP-NIGEYITANEVNLCLSIQTFQEAVHSQS 126 Query: 131 FQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 + Y++ ++ + ++ ++E + + ++ L + K D L Sbjct: 127 YSYMLDTICEPQERNDVLYQWKEDQHLLKRN----EFIGNL----YNEFQKKKDAGVLVK 178 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF +LGR N+M G ++ +YI RDE+ HL +++ ++K E Sbjct: 179 TLVANYILEGIYFYSGFMFFYNLGRNNRMPGSVQEIRYINRDENTHLWLFRNILLELKKE 238 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+T+ ++ R M+ E EI++ H + GLN Y+Q++ N RC +G Sbjct: 239 EPQLFTESRIEEYREMIKEGCQQEISWGHYVIGDDIQGLNRDMVTDYIQYLGNLRCTNLG 298 Query: 309 LEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 P+++ + + P W+S+ + K +FFE R T Y + + L Sbjct: 299 FAPIYEGHVKEPDSMSWVSQFSNANMIKTDFFEARSTAYAKSSAL 343 >gi|85710107|ref|ZP_01041172.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1] gi|85688817|gb|EAQ28821.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1] Length = 346 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 89/325 (27%), Positives = 157/325 (48%), Gaps = 20/325 (6%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L AR N P +Y WA+E + HWMP EVP+ +D W LT+ ER ++ Sbjct: 3 LLEAR---NTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWA--QNLTEHERNLLT 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 + FF ++ V + R E + L + E VH + +++ ++G+ E Sbjct: 58 QIFRFFTQADVEVQDCYHDKYGRVFKPTEIKMMLAAFSNMETVHIAAYSHLLDTIGMPES 117 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E ++ + + + K N+ Q++ D D++ + L +F EG+ + Sbjct: 118 E-YSAFLDYEEMADKHNYMHQFS------------VDTDEDIARTLAMFGGFTEGLQLFA 164 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 FA +++ R NKM G+ + + +RDE+LH GI + E TK ++ Sbjct: 165 SFAMLMNFPRFNKMKGMGQIVSWSVRDETLHCE-GIIKMFHTFCEERDCLTKAVKEDIID 223 Query: 264 MLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 + + LE A+ G V G+ A ++Y+++IA+ R Q+ L+P++ E+P PW Sbjct: 224 ICQKTVRLEDAFIDLAFEMGPVEGMTAKDIKKYIRYIADWRLGQLNLQPIYMIDEHPLPW 283 Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA 347 +S +++ + NFFE R TEY +GA Sbjct: 284 LSPLLNGVEHANFFEARATEYSKGA 308 >gi|322493026|emb|CBZ28311.1| ribonucleoside-diphosphate reductase small chain,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 388 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 151/317 (47%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W KY + W E+ + +D+ W + L D ER IK L FFA S+ Sbjct: 80 LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAA---LNDGERHFIKHVLAFFAGSD 136 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS T+ ++ + D E L + + Sbjct: 137 GIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 196 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ SS SF Q+ + + EG++F F + Sbjct: 197 TIPCIQRKAEWAVRWIG--SSASF------------QERLIGFAAVEGIFFSGSFCALFW 242 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + N H+ K +++ ++ +A Sbjct: 243 LKKRGLMPGLTFSNELISRDEGLHTDFA------CLLYNSHIKHKLPRERVLEIIVDAVN 296 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G E + T+ PF +M E+I L+ Sbjct: 297 IEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQ 354 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE +V EYQ+ Sbjct: 355 GKTNFFEKKVGEYQKAG 371 >gi|322491821|emb|CBZ27094.1| ribonucleoside-diphosphate reductase small chain,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 392 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 165/358 (46%), Gaps = 37/358 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNN 52 A + + P+ G + + VD NA + Q L P++Y W KY + Sbjct: 43 AEDLVMKPVAPGAEVLPVDKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 102 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE Sbjct: 103 IWTVEEIDLGNDMKDWAA---LNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPE 159 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTL 169 R + Q E +HS T+ ++ + D E L + + +P I KA WA+++ Sbjct: 160 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIG-- 217 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 SS SF Q+ + + EG++F F + L + M G+ + I R Sbjct: 218 SSASF------------QERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISR 265 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE LH +F + N H+ K +++ ++ +A +E + + +P +G+NA Sbjct: 266 DEGLHTDFACLLYNS------HIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNA 319 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 QY++F+A+R +G E + T+ PF +M E+I L+ + NFFE +V EYQ+ Sbjct: 320 ELMAQYIEFVADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAG 375 >gi|103487260|ref|YP_616821.1| ribonucleotide-diphosphate reductase subunit beta [Sphingopyxis alaskensis RB2256] gi|98977337|gb|ABF53488.1| Ribonucleoside-diphosphate reductase [Sphingopyxis alaskensis RB2256] Length = 354 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/313 (26%), Positives = 154/313 (49%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HW+P EVP+ +D W K ++D ER ++ + FF ++ Sbjct: 12 PFEYPWAFDFWKRQQQIHWVPEEVPLGEDCRDWAQK--ISDHERNLLTQIFRFFTQADIE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + R E + L + E VH + +++ ++G+ E E + M+ E + Sbjct: 70 VQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGMFLEYDEM 128 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 AK ++ Q+ + D++ + L +F EG+ + FA +++ R N Sbjct: 129 RAKHDYMQQFGV------------ETDEDIARTLAMFGGFTEGLQLFASFAMLMNFPRFN 176 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH I + + E L TK ++ + LE A+ Sbjct: 177 KMKGMGQIVSWSIRDESLHCEGIIKLFHAFTKERGCL-TKAVKEDIIDTCQKTVRLEDAF 235 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 +G V G+ ++Y+++IA+ R Q+G +P++ E+P PW++ +++ + N Sbjct: 236 IDLAFEQGPVPGMTPKEIKRYIRYIADWRLGQLGFQPIYMIDEHPLPWLAPLLNGVEHAN 295 Query: 335 FFETRVTEYQQGA 347 FFETR TEY +GA Sbjct: 296 FFETRATEYSKGA 308 >gi|84998662|ref|XP_954052.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate reductase small chain [Theileria annulata] gi|65305050|emb|CAI73375.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate reductase small chain, putative [Theileria annulata] Length = 322 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/303 (28%), Positives = 144/303 (47%), Gaps = 14/303 (4%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+ Y WE Y A + W E+ D W + L DER I Sbjct: 19 ILNRNPNRTCLFPIVYPDFWEWYKKAQASFWTAEEIDFSMDYNHW---HKLNKDERHFIT 75 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ L R + PE + + Q E +HS T+ +I + DE Sbjct: 76 NVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVKDEA 135 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF + ++ KANWA ++ +S + + ++ V Y EG+ Sbjct: 136 EKRRLFMAIETIDAVKDKANWAKKWITDENSFAERIVSNFKNKLINYYRIVAYAAVEGIL 195 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F + L + M G+ + I RDE LH +FG + + +K + P ++ Sbjct: 196 FSGSFCALFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYHNLKHKLP-------EEA 248 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + ++ EA ++E +Y +++P +G+N+ QY++F+A+R +G+ P++ T NPF Sbjct: 249 VQQIIKEAVVVERSYICDSLPCDLIGMNSQLMTQYIEFVADRLLQSLGVRPVYNVT-NPF 307 Query: 321 PWM 323 WM Sbjct: 308 DWM 310 >gi|266623614|ref|ZP_06116549.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium hathewayi DSM 13479] gi|288864591|gb|EFC96889.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium hathewayi DSM 13479] Length = 346 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/348 (27%), Positives = 164/348 (47%), Gaps = 19/348 (5%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + +V ++RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNPDGDTDVRNRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWVPEEINLGPDV-- 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L ER + L F +S+ N+ AI +++ E L Q F+EAVH Sbjct: 66 -KDYPMLDAGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQTFQEAVH 123 Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 S ++ Y++ ++ + E+ ++ + A+ T + KD Sbjct: 124 SQSYSYMLDTICEPQTRNEVLYQWKNDEHLLAR--------NTFIGNLYNEFQKDKSPFT 175 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 V + EG++FY+GF +LGR +KM G A++ +YI RDE+ HL ++I ++ Sbjct: 176 FMKTVVANFILEGVYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFRNMILEL 235 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K E P L+T + R M+ E EIA+ H + GL Y+Q++ N RC Sbjct: 236 KNEEPELFTPDRVDVYREMIKEGCRQEIAWGHYAIGDKVPGLTKDMITDYIQYLGNLRCM 295 Query: 306 QIGLEPLFKYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 +G EP+++ E W+S+ + K +FFE R T Y + + L Sbjct: 296 SLGFEPIYEGHEKEPESMAWVSQYSNANMIKTDFFEARSTAYAKSSAL 343 >gi|86149605|ref|ZP_01067835.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151167|ref|ZP_01069382.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|86153704|ref|ZP_01071907.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597173|ref|ZP_01100408.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|121613260|ref|YP_999944.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni 81-176] gi|157414529|ref|YP_001481785.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni 81116] gi|167004901|ref|ZP_02270659.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni 81-176] gi|218561895|ref|YP_002343674.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283955655|ref|ZP_06373148.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 1336] gi|315123818|ref|YP_004065822.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85839873|gb|EAQ57132.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841514|gb|EAQ58761.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85842665|gb|EAQ59877.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250215|gb|EAQ73173.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|88190234|gb|EAQ94208.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112359601|emb|CAL34386.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|157385493|gb|ABV51808.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni 81116] gi|283792880|gb|EFC31656.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 1336] gi|284925507|gb|ADC27859.1| ribonucleoside-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni IA3902] gi|307747171|gb|ADN90441.1| Ribonucleoside-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni M1] gi|315017540|gb|ADT65633.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315928159|gb|EFV07477.1| ribonucleotide reductase, small chain family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315932030|gb|EFV10983.1| ribonucleotide reductase, small chain family protein [Campylobacter jejuni subsp. jejuni 327] Length = 340 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 12/311 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ + L+ D D L V + EG++FY+GF I +L RA KM Sbjct: 153 KNDFISSIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 +G A+ ++I RDE HL ++IN ++ E P L+ E K M +A LEI + Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336 +G E+Y+ ++ ++R I L+ L+ ++P W+ + +K NFF Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323 Query: 337 ETRVTEYQQGA 347 E++VT Y +G+ Sbjct: 324 ESKVTNYSKGS 334 >gi|3220181|gb|AAC23560.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis] Length = 354 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 151/317 (47%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W KY + W E+ + +D+ W + L D ER IK L FFA S+ Sbjct: 46 LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAA---LNDGERHFIKHVLAFFAGSD 102 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS T+ ++ + D E L + + Sbjct: 103 GIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 162 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ SS SF Q+ + + EG++F F + Sbjct: 163 TIPCIQRKAEWAVRWIG--SSASF------------QERLIGFAAVEGIFFSGSFCALFW 208 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + N H+ K +++ ++ +A Sbjct: 209 LKKRGLMPGLTFSNELISRDEGLHTDFA------CLLYNSHIKHKLPRERVLEIIVDAVN 262 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G E + T+ PF +M E+I L+ Sbjct: 263 IEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQ 320 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE +V EYQ+ Sbjct: 321 GKTNFFEKKVGEYQKAG 337 >gi|154337607|ref|XP_001565036.1| ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062075|emb|CAM45178.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] Length = 392 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 151/317 (47%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W KY + W E+ + +D+ W + L D ER IK L FFA S+ Sbjct: 84 LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWVA---LNDGERHFIKHVLAFFAGSD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS T+ ++ + D E L + + Sbjct: 141 GIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 200 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ SS SF Q+ + + EG++F F + Sbjct: 201 TIPCIQKKAEWAVRWIG--SSASF------------QERLIGFAAVEGIFFSGSFCALFW 246 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + N H+ K +++ ++ +A Sbjct: 247 LKKRGLMPGLTFSNELISRDEGLHTDFA------CLLYNSHIKHKLPRERVLEIIVDAVN 300 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G E + T+ PF +M E+I L+ Sbjct: 301 IEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEEKHYNATQ-PFDFM-EMISLQ 358 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE +V EYQ+ Sbjct: 359 GKTNFFEKKVGEYQKAG 375 >gi|328700093|ref|XP_001944536.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Acyrthosiphon pisum] Length = 361 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/317 (29%), Positives = 149/317 (47%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y + W EV ++ DL W LTDDER I L FFA+S+ Sbjct: 51 IFPIIYDDIWAMYKKQEASFWNVEEVNLKSDLEDWMK---LTDDERHFISHVLAFFAASD 107 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 108 GIVNENLVERFSQEVQVTEARCFYGFQIMMENIHSEMYSLLIDTYIQDPKEKDFLFNAIE 167 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL++ D+ F + L F V EG++F FA + Sbjct: 168 TMPCVKKKADWALKW------------ISDSKATFGERLVAFAAV-EGIFFSGSFAALFW 214 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL K Q ++ EA Sbjct: 215 LKKRGLMPGLTFSNELISRDEGLHTDFACLLFK-------HLEQKPPQAVITHIICEAVT 267 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P VG++ Y++F+A+R +++G +++ + NPFP+M ++I + Sbjct: 268 IEQDFLTNALPVRMVGMSCEKMAVYIEFVADRLLNELGCPTVYR-SSNPFPFM-DLISQQ 325 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV +YQ+ + Sbjct: 326 GKTNFFEKRVGDYQKAS 342 >gi|317472120|ref|ZP_07931452.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA] gi|316900524|gb|EFV22506.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA] Length = 347 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/340 (26%), Positives = 168/340 (49%), Gaps = 19/340 (5%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V +RM+N + ++N +KY W Y A NN W+P E+ + D+ +K L+ Sbjct: 16 TDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIKDYKQ---LS 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + ER + L F +S+ N+ I +++ E L QAF+EAVHS ++ Y++ Sbjct: 73 EPERRAYDKILSFLIFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAVHSQSYSYML 131 Query: 136 TSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ + ++ ++ P + L+ Q + T + F++ L Y Sbjct: 132 DTICEPQERNDILYQWKNDPHL-------LERNQFIGDLYNDFQTNKNTETFVKTLVANY 184 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FY+GF +LGR ++M G ++ +YI RDE+ HL +++ ++K E P L+ Sbjct: 185 IL-EGIYFYSGFMFFYNLGRNHRMPGSVQEIRYINRDENTHLWLFKNILLELKKEEPSLF 243 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + R M+ + EI + H + GL E+Y++++ N RC +G EP++ Sbjct: 244 HPDCINDYRRMIKKGCEQEIRWGHYVIGDEIQGLKKEMVEEYIRYLGNLRCQNLGFEPIY 303 Query: 314 KYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 +E W+S+ + K +FFE + T Y + + L Sbjct: 304 PGSETEPESMSWVSQFSNANMIKTDFFEAKSTAYAKSSAL 343 >gi|71024571|ref|XP_762515.1| hypothetical protein UM06368.1 [Ustilago maydis 521] gi|46101992|gb|EAK87225.1| hypothetical protein UM06368.1 [Ustilago maydis 521] Length = 424 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 152/323 (47%), Gaps = 29/323 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W+ Y A + W E+ + DL W +K L D+ER I L FFA+S+ Sbjct: 106 LFPIRFHEIWQMYKKAEASFWTAEEIDLSKDLHDWDNK--LNDNERHFISHVLAFFAASD 163 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMY 149 +V N+V + E R + Q E +HS T+ +I + + E E LF+ Sbjct: 164 GIVNENLVERFSSEVQAAEARCFYGFQIMMENIHSETYSLLIDTY-IREPEQREYLFDAV 222 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 +P + KA+WAL++ D F + L F V EG++F FA I Sbjct: 223 ETIPVVKQKADWALRWIS------------DKRATFAERLVAFAAV-EGIFFSGSFASIF 269 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 L + M G+ + I RDE LH +F + + HL + ++ EA Sbjct: 270 WLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLRRRAHPDTVLKIITEAV 322 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E A+ E++P +G+N+ QY++++A+R +G P+ + PF +M+ I L Sbjct: 323 EIEKAFLCESIPVALIGMNSKLMCQYIEYVADRLLVSLG-NPVHYGSTCPFDFMTN-ISL 380 Query: 330 KKEKNFFETRVTEYQQGAELKWD 352 + + NFFE +V EY + + D Sbjct: 381 EGKTNFFEKKVAEYAKAGVARKD 403 >gi|193784694|dbj|BAG53847.1| unnamed protein product [Homo sapiens] gi|193787382|dbj|BAG52588.1| unnamed protein product [Homo sapiens] Length = 297 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 146/303 (48%), Gaps = 28/303 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + D+ W+S L +ER I L FFA+S+ +V N+V Sbjct: 2 YKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + E R + Q E +HS + +I + D E LFN +P + KA+WA Sbjct: 59 QEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWA 118 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L++ G K+A + V + EG++F FA I L + M G+ Sbjct: 119 LRWI----------GDKEAT---YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTF 165 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I RDE LH +F + HL K +++ R ++ A +E + E +P Sbjct: 166 SNELISRDEGLHCDFACLMFK-------HLVHKPSEERVREIIINAVRIEQEFLTEALPV 218 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 +G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV E Sbjct: 219 KLIGMNCTLMKQYIEFVADRLMLELGFSKVFR-VENPFDFM-ENISLEGKTNFFEKRVGE 276 Query: 343 YQQ 345 YQ+ Sbjct: 277 YQR 279 >gi|19881429|ref|NP_612246.1| putative ribonucleotide reductase small subunit [Infectious spleen and kidney necrosis virus] gi|19773634|gb|AAL98748.1|AF371960_24 putative ribonucleotide reductase small subunit [infectious spleen and kidney necrosis virus] Length = 312 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/306 (29%), Positives = 148/306 (48%), Gaps = 27/306 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W Y A + W EV + D+ W K LT+ ER + L FFA ++ +V +N+V Sbjct: 14 WAMYKKAVASFWTVEEVDLSTDVRHWTEK--LTEAERRFMSHILAFFAMADGIVGDNLVC 71 Query: 103 AIYRHLSN-PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKA 159 + L PE R + Q E +H+ + +I +L E + LF+ ++P + AKA Sbjct: 72 NFAKELDYIPEARAFYGFQVAMENIHAEMYTQLIITLVAKENQAALFSAAEDMPCVKAKA 131 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 WA Q+ L++ + T+ L F V EG+ F FA I L + + M G Sbjct: 132 QWAAQW---LNATHKSIATR---------LLAFAAV-EGVMFSGSFAAIFWLKKRSLMPG 178 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +A + I RDE LH +F + Q+ K Q + ++ +A +E A+ E Sbjct: 179 LAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHQIISDAVDIETAFFQEA 231 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 + +G+N+ S Y+QF+A+R +G ++ NPF +M I ++ + NFFE R Sbjct: 232 LKTPLLGMNSDSMRLYIQFVADRLLDALGYAKMYN-VANPFDFMDN-ISIEGKTNFFERR 289 Query: 340 VTEYQQ 345 V+EYQ+ Sbjct: 290 VSEYQR 295 >gi|294501621|ref|YP_003565321.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus megaterium QM B1551] gi|295706969|ref|YP_003600044.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus megaterium DSM 319] gi|294351558|gb|ADE71887.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus megaterium QM B1551] gi|294804628|gb|ADF41694.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus megaterium DSM 319] Length = 347 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/323 (26%), Positives = 161/323 (49%), Gaps = 28/323 (8%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +++ WA+ KY N W P E+ M D+ K LT DE+ + +G A +S + Sbjct: 35 VRFSWAFPKYKRMLANFWTPFEINMGQDI---KQFPQLTADEQESFLKIIGLLALLDS-I 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154 ++ + ++++ ++ A +E VH+H++ Y+++SL + E+F +R Sbjct: 91 QSDYASKVADYVTDSSINALMIILAQQEVVHNHSYSYVLSSLVPKGKQDEVFEYWRTDEK 150 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + A+ ++ + S + + FL+ + V+ V+ EG++FY+GFA +L R Sbjct: 151 LRARNDFITNGYKAFSEEATV-------ENFLKSM-VYDVILEGLFFYSGFAFFYNLARN 202 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KMV + YI RDE LH+ + ++ ENP T+E + EA LEI Sbjct: 203 QKMVATSTMINYINRDEQLHVGLFEKIFKEVLNENPAYRTEELETFVVETFQEAARLEIE 262 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL-------EPLFKYTENPFPWM--SE 325 +A + + F G+ +QY++++AN+RC+Q+G P+ ENP W+ + Sbjct: 263 WAESVIGEKFDGITMKELQQYIEYMANKRCNQLGFGRAAFPEAPI----ENPLRWIIAYQ 318 Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348 +DL K +FFE + +Y + ++ Sbjct: 319 EVDLGK-TDFFEQKSRQYTKASD 340 >gi|167748341|ref|ZP_02420468.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662] gi|167652333|gb|EDR96462.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662] Length = 358 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/340 (26%), Positives = 168/340 (49%), Gaps = 19/340 (5%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V +RM+N + ++N +KY W Y A NN W+P E+ + D+ +K L+ Sbjct: 27 TDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIKDYKQ---LS 83 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + ER + L F +S+ N+ I +++ E L QAF+EAVHS ++ Y++ Sbjct: 84 EPERRAYDKILSFLIFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAVHSQSYSYML 142 Query: 136 TSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ + ++ ++ P + L+ Q + T + F++ L Y Sbjct: 143 DTICEPQERNDILYQWKNDPHL-------LERNQFIGDLYNDFQTNKNTETFVKTLVANY 195 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FY+GF +LGR ++M G ++ +YI RDE+ HL +++ ++K E P L+ Sbjct: 196 IL-EGIYFYSGFMFFYNLGRNHRMPGSVQEIRYINRDENTHLWLFKNILLELKKEEPSLF 254 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + R M+ + EI + H + GL E+Y++++ N RC +G EP++ Sbjct: 255 HPDCINDYRRMIKKGCEQEIRWGHYVIGDEIQGLKKEMVEEYIRYLGNLRCQNLGFEPIY 314 Query: 314 KYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 +E W+S+ + K +FFE + T Y + + L Sbjct: 315 PGSETEPESMSWVSQFSNANMIKTDFFEAKSTAYAKSSAL 354 >gi|319655055|ref|ZP_08009124.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. 2_A_57_CT2] gi|317393250|gb|EFV74019.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. 2_A_57_CT2] Length = 345 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 150/315 (47%), Gaps = 20/315 (6%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +++ WA+ KY N W P E+ M D+ K L E+ + +G A +S + Sbjct: 35 VRFSWAYPKYKKMLANFWTPFEINMSQDI---KQFPELRKSEQEAFLKIIGLLALLDS-I 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154 + + ++++ ++ A +E +H+H++ Y+++SL + E+F +R P Sbjct: 91 QTDYAGKVADYITDSSISALMIILAQQEVIHNHSYSYVLSSLVPKQKQDEVFEFWRTEPI 150 Query: 155 ITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + + + + Y +PS E L VF VV EG++FY+GFA L R Sbjct: 151 LAERNEFVVNGYKDFAENPS---------AENLLKSIVFDVVLEGLFFYSGFAFFYHLAR 201 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KMV + YI RDE +H++ + + +I ENP L T E + + A LEI Sbjct: 202 NQKMVATSTMINYINRDEQIHVDLFVKIFKEILQENPELNTNELSKFVQETFKRAAELEI 261 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMS--EVIDLK 330 +A + + G+ E Y++F AN RC+Q+G E P Y NP W+ E +D Sbjct: 262 EWARDVIGSKTEGILLSDVEAYIKFYANIRCNQLGYERPFEGYRTNPLRWIVAYEQVDHG 321 Query: 331 KEKNFFETRVTEYQQ 345 K +FFE + +Y + Sbjct: 322 K-SDFFEQKSRQYTK 335 >gi|3914644|sp|O46310|RIR2_LEIAM RecName: Full=Ribonucleoside-diphosphate reductase small subunit; AltName: Full=Ribonucleotide reductase M2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|2828563|gb|AAC08302.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis] Length = 345 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 97/353 (27%), Positives = 163/353 (46%), Gaps = 37/353 (10%) Query: 7 LSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNNHWMPT 57 + P+ AG + + D + NA + Q L P++Y W KY + W Sbjct: 1 MKPVAAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVE 60 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE R + Sbjct: 61 EIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFY 117 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +HS T+ ++ + D E L + + +P I KA W +++ SS SF Sbjct: 118 GFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWIG--SSASF 175 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 Q + + EG++F F + L + M G+ + I RDE LH Sbjct: 176 ------------QQRLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLH 223 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 +F + N H+ K +++ ++ +A +E + + +P +G+NA Q Sbjct: 224 TDFA------CLLYNSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQ 277 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 Y++F+A+R +G E ++ T+ PF +M E+I L+ + NFFE RV EYQ+ Sbjct: 278 YIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAG 328 >gi|89097912|ref|ZP_01170799.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. NRRL B-14911] gi|89087414|gb|EAR66528.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. NRRL B-14911] Length = 353 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/314 (28%), Positives = 156/314 (49%), Gaps = 22/314 (7%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +++ WA+ KY N W P E+ M D+ K L+++E+ + +G A +S + Sbjct: 42 VRFQWAFPKYKRMLANFWTPFEINMSQDI---KQFPDLSEEEKEAFLKIIGLLALLDS-I 97 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVP 153 + + +L++ ++ A +E +H+H++ Y+++S+ +D + E+F +R P Sbjct: 98 QTDYAGKVADYLTDSSLSALMIILAQQEVIHNHSYSYVLSSI-VDKNKQDEVFEFWRTEP 156 Query: 154 SITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 ++ + + A Y SP+ + K +F VV EG++FY+GFA L Sbjct: 157 ALIKRNEFVASGYRNFAESPTVDSLLKS---------IIFDVVLEGLFFYSGFAFFYHLA 207 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R KMV + YI RDE LH++ + + +I E P TKE + + + EA LE Sbjct: 208 RNQKMVATSTMINYINRDEQLHVDLFVKIFREILDEYPEQNTKELAEFAESTFREAAYLE 267 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMS--EVIDL 329 I +A + G+ E+Y++F AN R +Q+G F+ + NP W+ E +DL Sbjct: 268 IEWARSIIGDKISGILIGDVEEYIRFYANVRSNQLGFNRPFEGSRTNPLRWIKAYEEVDL 327 Query: 330 KKEKNFFETRVTEY 343 K +FFE + +Y Sbjct: 328 GK-SDFFEQKPRQY 340 >gi|227501022|ref|ZP_03931071.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC 35098] gi|227216795|gb|EEI82193.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC 35098] Length = 352 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 94/331 (28%), Positives = 164/331 (49%), Gaps = 20/331 (6%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++N LKY W + Y A NN W+P E+ + D+ ++ L E+ R L F Sbjct: 34 TNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDYRK---LDQYEKKAYDRILSF 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 +S+ N+ + +++ E L Q ++E++HS ++ YI+ ++ E + Sbjct: 91 LTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHSQSYSYILDTICSPEERTRIL 149 Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 +++E + + + QY + L + D + F++ L Y++ EG++FY+GF Sbjct: 150 YLWKEDEHLLKRNEFIGEQYNEFLEN--------DDEFRFMKVLVANYIL-EGIYFYSGF 200 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 + +LGR KM G ++ +YI RDE+ HL +IN +K E L+ E Q R ML Sbjct: 201 SFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKEREDLFVPELQNYYRNML 260 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP--FPW 322 E EIA+ + GLN E Y++++ N R +GLE L++ + E P W Sbjct: 261 KEGVEQEIAWGKYAIGNEIAGLNEKMIEDYIKYLGNLRAKGLGLEALYEGFDEIPESMKW 320 Query: 323 MSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 + E D K +FFE +VT Y + + ++ D Sbjct: 321 VDEYSDPNGVKTDFFEAKVTAYSKSSIIEDD 351 >gi|313675915|ref|YP_004053911.1| ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126] gi|312942613|gb|ADR21803.1| Ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126] Length = 331 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/333 (27%), Positives = 158/333 (47%), Gaps = 29/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L D L P+++ WE Y A + W E+ + D W++ LT+ E Sbjct: 9 DEPILKENKDRFVLFPIQHKDIWEFYKMAEASFWTAEEIDLSQDQKDWEN---LTEGETH 65 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + E + + Q E VHS T+ +I + Sbjct: 66 FIKHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGFQIAMENVHSETYSLLIDTYVK 125 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E LFN + + KA+WAL++ + + + L F V E Sbjct: 126 DNKEKDKLFNAIDTMDCVKKKADWALRWID--------------EGNYAERLIAFAAV-E 170 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + N HL K Sbjct: 171 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFA------CLLYNDHLVNKLS 224 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++K ++ +A +E + +++P +G+NA QY++F+A+R ++ + ++ + Sbjct: 225 KEKVTAIITDAVEIEKEFVTDSLPVKLIGMNADLMCQYIEFVADRLLQELRCDKVYG-SS 283 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E+I L+ + NFFE RV +YQ+ +K Sbjct: 284 NPFDFM-EMISLQGKTNFFEKRVGDYQKAGVMK 315 >gi|205356539|ref|ZP_03223302.1| ribonucleoside diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8421] gi|205345544|gb|EDZ32184.1| ribonucleoside diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8421] Length = 340 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 12/311 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTVGEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ + L+ D D L V + EG++FY+GF I +L RA KM Sbjct: 153 KNDFISSIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 +G A+ ++I RDE HL ++IN ++ E P L+ E K M +A LEI + Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336 +G E+Y+ ++ ++R I L+ L+ ++P W+ + +K NFF Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323 Query: 337 ETRVTEYQQGA 347 E++VT Y +G+ Sbjct: 324 ESKVTNYSKGS 334 >gi|90660281|gb|ABD97395.1| ribonucleotide reductase small subunit [Cowpox virus] Length = 333 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 28 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 85 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 145 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFTAVEGIFFSGSFASIFW 190 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 191 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRSIITDAVS 243 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 244 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 301 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 302 GKTNFFEKRVGEYQK 316 >gi|56713400|gb|AAW23440.1| ribonucleoside-diphosphate reductase [Vaccinia virus] gi|56713684|gb|AAW23722.1| ribonucleoside-diphosphate reductase [Vaccinia virus] gi|88854075|gb|ABD52493.1| ribonucleoside-diphosphate reductase subunit [Vaccinia virus] gi|167412519|gb|ABZ79953.1| ribonucleotide reductase small subunit [Vaccinia virus GLV-1h68] Length = 319 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRSIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|44971395|gb|AAS49745.1| RPXV032 [Rabbitpox virus] Length = 319 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|237845387|ref|XP_002371991.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii ME49] gi|211969655|gb|EEB04851.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii ME49] gi|221501644|gb|EEE27410.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii VEG] Length = 391 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 89/314 (28%), Positives = 150/314 (47%), Gaps = 23/314 (7%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP+++ WE Y + W E+ + D+ W++ L ++E+ IK L FFA+S+ Sbjct: 85 ILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFIKYVLAFFAASD 141 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +V N+ + PE R + Q E +HS T+ +I DE E ++ V Sbjct: 142 GIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDEEEKLQLFDAVH 201 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 ++ A A A ++ ++ + V + EG+ F F I L + Sbjct: 202 NVKAVAVKAAWAAMWIN-----------NRNCFAERLVGFACVEGILFSGSFCAIFWLKK 250 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 M G+ + I RDE LH +F + +Q+K + P + + M+ EA +E Sbjct: 251 RGLMPGLTFSNELISRDEGLHADFACLLYSQLKHKLP-------DKVVQDMVREAVTVER 303 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 A+ E +P +G+N S QY++F+A+R +G+ +F + NPF WM E+I L+ + Sbjct: 304 AFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKIF-FATNPFDWM-ELISLQGKT 361 Query: 334 NFFETRVTEYQQGA 347 NFFE RV EYQ+ Sbjct: 362 NFFEKRVGEYQKAG 375 >gi|221480670|gb|EEE19110.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii GT1] Length = 391 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 89/314 (28%), Positives = 150/314 (47%), Gaps = 23/314 (7%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP+++ WE Y + W E+ + D+ W++ L ++E+ IK L FFA+S+ Sbjct: 85 ILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFIKYVLAFFAASD 141 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +V N+ + PE R + Q E +HS T+ +I DE E ++ V Sbjct: 142 GIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDEEEKLQLFDAVH 201 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 ++ A A A ++ ++ + V + EG+ F F I L + Sbjct: 202 NVKAVAVKAAWAAMWIN-----------NRNCFAERLVGFACVEGILFSGSFCAIFWLKK 250 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 M G+ + I RDE LH +F + +Q+K + P + + M+ EA +E Sbjct: 251 RGLMPGLTFSNELISRDEGLHADFACLLYSQLKHKLP-------DKVVQDMVREAVTVER 303 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 A+ E +P +G+N S QY++F+A+R +G+ +F + NPF WM E+I L+ + Sbjct: 304 AFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKIF-FATNPFDWM-ELISLQGKT 361 Query: 334 NFFETRVTEYQQGA 347 NFFE RV EYQ+ Sbjct: 362 NFFEKRVGEYQKAG 375 >gi|111184227|gb|ABH08147.1| HSPV044 [Horsepox virus] Length = 319 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|57237291|ref|YP_178304.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni RM1221] gi|148926379|ref|ZP_01810063.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8486] gi|57166095|gb|AAW34874.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni RM1221] gi|145844771|gb|EDK21876.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8486] gi|315057661|gb|ADT71990.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Campylobacter jejuni subsp. jejuni S3] Length = 340 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 12/311 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTVGEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ + L+ D D L V + EG++FY+GF I +L RA KM Sbjct: 153 KNDFISSIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 +G A+ ++I RDE HL ++IN ++ E P L+ E K M +A LEI + Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336 +G E+Y+ ++ ++R I L+ L+ ++P W+ + +K NFF Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323 Query: 337 ETRVTEYQQGA 347 E++VT Y +G+ Sbjct: 324 ESKVTNYSKGS 334 >gi|157869457|ref|XP_001683280.1| ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] gi|68224164|emb|CAJ04657.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] Length = 392 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 151/317 (47%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W KY + W E+ + +D+ W + L D ER IK L FFA S+ Sbjct: 84 LFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSD 140 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS T+ ++ + D E L + + Sbjct: 141 GIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQ 200 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ SS SF Q+ + + EG++F F + Sbjct: 201 TIPCIQKKAEWAVRWIG--SSASF------------QERLIGFAAVEGIFFSGSFCALFW 246 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + N H+ K +++ ++ +A Sbjct: 247 LKKRGLMPGLTFSNELISRDEGLHTDFACLLYNS------HIKHKLPRERVLEIIVDAVN 300 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA QY++F+A+R +G E + T+ PF +M E+I L+ Sbjct: 301 IEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEEKHYHSTQ-PFEFM-EMISLQ 358 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE +V EYQ+ Sbjct: 359 GKTNFFERKVGEYQKAG 375 >gi|90592764|ref|YP_529717.1| RR2B [Agrotis segetum nucleopolyhedrovirus] gi|71559214|gb|AAZ38213.1| RR2B [Agrotis segetum nucleopolyhedrovirus] Length = 313 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 152/315 (48%), Gaps = 26/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W Y A + W EV + D + SK L DDER IK L FFA+++ Sbjct: 8 LFPIQHNDLWRAYKQALDCMWKVEEVDLSKDCDDFTSK--LNDDERYFIKHVLAFFAAAD 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V N++ + +++ E + + +Q E VH+ + +I L DE E L N + Sbjct: 66 SIVNINLIEYMQQNVPELEAQYFYNQQVLIECVHTEMYNLLIHQLISDEHERDTLLNAFE 125 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + K +WA+++ + +T T F + + F +V EG++F FA I Sbjct: 126 RMPCVRKKTDWAMKWINS------STAT------FAERMVAFAIV-EGVFFSGSFAAIFY 172 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + M G+ + I RDE LH +F N + K +M EA Sbjct: 173 IKTKGIMPGLTFSNELISRDEGLHTDFA------CLYYNTRVHDKLAPDTVLSMFKEAVA 226 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+NA S Y++F+A+R Q+ +P + NPF +M+ I L+ Sbjct: 227 IEKEFFTAALPAALLGMNAQSMCDYIEFVADRLLVQLH-QPKHFHARNPFEFMNN-ISLE 284 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EY++ Sbjct: 285 GKTNFFEKRVGEYKR 299 >gi|56404698|sp|O57175|RIR2_VACCA RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|2772676|gb|AAB96415.1| ribonucleotide reductase, small subunit [Vaccinia virus] gi|47088360|gb|AAT10430.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|160857924|emb|CAM58212.1| ribonucleotide reductase small subunit [Vaccinia virus Ankara] Length = 319 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRSIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|22164633|ref|NP_671546.1| EVM028 [Ectromelia virus] gi|22123774|gb|AAM92332.1|AF523264_28 EVM028 [Ectromelia virus] Length = 319 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 145/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQVTEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++FIA+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIEFIADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|6969682|gb|AAF33894.1| TF4L [Vaccinia virus Tian Tan] Length = 319 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 144/315 (45%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE L +F + HL ++ R+++ +A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLRCDFACLMFK-------HLLHPPSEETVRSIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N E Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMETYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQQ Sbjct: 288 GKTNFFEKRVGEYQQ 302 >gi|302379704|ref|ZP_07268189.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna ACS-171-V-Col3] gi|302312611|gb|EFK94607.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna ACS-171-V-Col3] Length = 347 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/341 (26%), Positives = 170/341 (49%), Gaps = 15/341 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + +R++N + ++N +KY W E Y A NN W+P E+ + D+ K L+ Sbjct: 16 IELSKRRIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDI---KDYRNLS 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DE++ + L F +SL + + +++ E L QAF+E++HS ++ YI+ Sbjct: 73 EDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYIL 131 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 ++ E +Y+ + L+ + + K +++ F++ L Y++ Sbjct: 132 DTICSPEERTDILYQ-----WKDDEFLLERNRFIGDQYNDFFEKKSERNFMKALIANYIL 186 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K E P L+T+ Sbjct: 187 -EGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKERPELFTE 245 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 E + + M+ + EI +A + + GL+ E Y++++ N R +G ++ Sbjct: 246 EKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLGFGVIYPG 305 Query: 316 TENPFP---WMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 E P W+SE D K K +FFE + + Y + A ++ D Sbjct: 306 YEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 346 >gi|331086748|ref|ZP_08335825.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409914|gb|EGG89349.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 9_1_43BFAA] Length = 347 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 176/346 (50%), Gaps = 23/346 (6%) Query: 12 AGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 AG+ V + +R++ + ++N +KY W + Y A NN W+P E+ + D+ +++ Sbjct: 13 AGDTEVRL--RRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVRDYRT 70 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L ER + L F +S+ N+ I +++ E L QAF+EAVHS + Sbjct: 71 ---LPAPERRAYDKILSFLVFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAVHSQS 126 Query: 131 FQYIITSLG--LDEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQ 187 + Y++ ++ + ++ +++ P + ++ + Y + S + F++ Sbjct: 127 YSYMLDTICEPQERNKVLYQWKDDPHLLSRNEFIGNLYNEFQREKSL--------EAFVR 178 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + Y++ EG++FY+GF +LGR KM G ++ +YI RDE+ HL +++ +++ Sbjct: 179 TMIANYIL-EGIYFYSGFMFFYNLGRNQKMTGSVQEIRYINRDENTHLWLFTNILRELRK 237 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P L+++E +++ R M+ E EIA+ H + GL+ Y++++ N RC + Sbjct: 238 ELPELFSEEKEKEYRQMIREGCEQEIAWGHYVIGDAVSGLSCDMITDYVKYLGNLRCKNL 297 Query: 308 GLEPLFKYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 GL P+++ E W+S+ + K +FFE + T Y + + L Sbjct: 298 GLAPIYEGHEKEPESMGWVSQFSNANMIKTDFFEAKSTAYAKSSAL 343 >gi|194319980|pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B gi|194319981|pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B Length = 326 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 92/324 (28%), Positives = 153/324 (47%), Gaps = 28/324 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E + +++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 28 ESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 84 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 85 LKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 144 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D + LFN +P + KA+WAL++ S T G + Sbjct: 145 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKS---TFGER----------V 191 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 192 VAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ------- 244 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 +L K +++ R ++ +A +E + E +P G +G+N +QY++F+A+R ++G Sbjct: 245 YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS 304 Query: 311 PLFKYTENPFPWMSEVIDLKKEKN 334 +F+ ENPF +M E I L+ + N Sbjct: 305 KVFQ-AENPFDFM-ENISLEGKTN 326 >gi|438946|gb|AAA60776.1| homolog of vaccinia virus CDS F4L (ribonucleotide reductase, small chain); putative [Variola major virus] gi|94484491|gb|ABF23604.1| ribonucleotide reductase small subunit [Variola virus] gi|94484688|gb|ABF23800.1| ribonucleotide reductase small subunit [Variola virus] gi|94484886|gb|ABF23997.1| ribonucleotide reductase small subunit [Variola virus] gi|109724274|gb|ABG43399.1| ribonucleotide reductase small subunit [Variola virus] Length = 333 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 148/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 28 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 85 GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ +S + + L F V EG++F FA I Sbjct: 145 TMPCVKKKADWAQKWIHDSAS-------------YGERLIAFAAV-EGIFFSGSFASIFW 190 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 191 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 243 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 244 IEQEFLTVALPVKLIGMNCEMMKTYIKFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 301 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 302 GKTNFFEKRVGEYQK 316 >gi|159465291|ref|XP_001690856.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas reinhardtii] gi|158279542|gb|EDP05302.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas reinhardtii] Length = 493 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/336 (27%), Positives = 149/336 (44%), Gaps = 29/336 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 R + D+ +L + L P+KY WE Y + W EV DL W L Sbjct: 160 SRSTLLDEDLLRENPNRFTLFPIKYPDLWEFYKQGVASFWTVEEVDFTGDLIDWHR---L 216 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +E+ IK L FFA+S+ +V N+ + PE R + Q E VHS + + Sbjct: 217 KPEEQRFIKYVLAFFAASDGIVMENLAARFMSDIQVPEARAFYGFQIAMENVHSEMYSVL 276 Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 + + E LF+ +P++ KA WA+++ + + V Sbjct: 277 LDHYVREPEERNQLFDAIHTIPTVAKKAEWAMRWISS--------------SNVFAERLV 322 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG+ F F I L + M G++ I RDE LH +F + + H Sbjct: 323 GFACVEGIHFSGSFCSIFWLKKRCLMPGLSFSNVLISRDEGLHCDFACCLYS-------H 375 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L + +++ ++ EA LE + E + +G+NA QY++F+A+R +G E Sbjct: 376 LKNRLSRERVLQIVDEAVQLEDEFCTEALSCELLGMNADLMRQYIRFVADRLLVSLGYEK 435 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 + T NPF WM E+I L+ + NFFE RV EYQ+ Sbjct: 436 HYN-TRNPFDWM-EMISLQGKANFFERRVGEYQRAG 469 >gi|163801385|ref|ZP_02195284.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp. AND4] gi|159174874|gb|EDP59674.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp. AND4] Length = 310 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/327 (28%), Positives = 149/327 (45%), Gaps = 36/327 (11%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y + W E+ DL LT+ E+ I+ L FFA SE Sbjct: 9 LFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLP---DLVKLTEGEKHFIRHVLAFFAQSE 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 ++ N++ Y + E R +L QAF E +H+ T+ + + D E LFN Sbjct: 66 GMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERLFNAIE 125 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP++ KA W +++ + D+ L F +V EG++F F I Sbjct: 126 NVPTVQRKAQWVMKWISS-------------DKPLAMRLIAFGLV-EGLFFAGSFCAIYY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFG---IDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + + G+A I RDE LH +F + Q K+ QQ+ + E Sbjct: 172 FRKRGLLAGLAASNDLIARDEGLHFSFSALLFKTLGQGKVT---------QQEFEEICRE 222 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A +E + E +P +G+NA QY++ A+ G P F +ENPF +M ++ Sbjct: 223 AVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIADLFGFNPAFG-SENPFDYMR-LL 280 Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352 D++ + NFFE RVTEY+ Q +L +D Sbjct: 281 DMEGKTNFFEKRVTEYKRPQDRQLSFD 307 >gi|132628|sp|P20493|RIR2_VACCC RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|335366|gb|AAA48018.1| putative F4L [Vaccinia virus Copenhagen] Length = 319 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|66275840|ref|YP_232925.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|132629|sp|P11158|RIR2_VACCV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|335624|gb|AAA48244.1| F4L protein [Vaccinia virus] gi|335809|gb|AAA88680.1| ribonucleotide reductase (EC 1.17.4.1) small subunit [Vaccinia virus] gi|29692149|gb|AAO89322.1| ribonucleotide reductase small subunit [Vaccinia virus WR] Length = 319 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRSIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|291412327|ref|XP_002722439.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Oryctolagus cuniculus] Length = 400 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 90/306 (29%), Positives = 147/306 (48%), Gaps = 28/306 (9%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W + + W EV + D+ W++ L ++ER I L FFA+S+ +V N+V Sbjct: 102 WTRNKKGEASFWTAEEVDLSKDIQHWEA---LKEEERYFISHVLAFFAASDGIVNENLVE 158 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159 + + E R + Q E +HS + +I + D E LFN +P + KA Sbjct: 159 RFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKA 218 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 +WAL++ G K+A + V + EG++F FA I L + M G Sbjct: 219 DWALRWI----------GDKEAT---YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPG 265 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + + I RDE LH +F + HL K +Q+ + ++ A +E + E Sbjct: 266 LTFSNELISRDEGLHCDFACLMFK-------HLVHKPSEQRVQEIIVNAVRIEQEFLTEA 318 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 +P +G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE R Sbjct: 319 LPVKLIGMNCALMKQYIEFVADRLLLELGFSKVFR-VENPFDFM-ENISLEGKTNFFEKR 376 Query: 340 VTEYQQ 345 V EYQ+ Sbjct: 377 VGEYQR 382 >gi|323486976|ref|ZP_08092290.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum WAL-14163] gi|323399688|gb|EGA92072.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum WAL-14163] Length = 347 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 164/339 (48%), Gaps = 17/339 (5%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 ++ +RM+N + ++N +KY W Y A NN W+P E+ + D+ K LT Sbjct: 16 TDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDV---KDYPLLT 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER + L F +S+ N+ AI +++ E L Q F+EAVHS ++ Y++ Sbjct: 73 VGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQIFQEAVHSQSYSYML 131 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ-EFLQDLFVFYV 194 ++ + +Y+ K + L T + KD F++ L Y+ Sbjct: 132 DTICEPQTRNEVLYQ------WKNDGHLLARNTFIGGLYNEFQKDKTPFAFVKTLIANYI 185 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY+GF +LGR +KM G A++ +YI RDE+ HL +I +++ E P L++ Sbjct: 186 L-EGIYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFGSIIRELQTEEPSLFS 244 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 +E R M+ E EIA+ + GL Y++++ N RC +G EPL+ Sbjct: 245 REKTDCYREMIREGCEQEIAWGCYAIGDEVPGLTKQMITDYIRYLGNLRCSNLGFEPLYD 304 Query: 315 -YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 Y P W+S+ + K +FFE R T Y + + L Sbjct: 305 GYAHEPETMAWVSQYSNANMIKTDFFEARSTAYAKSSAL 343 >gi|323692021|ref|ZP_08106269.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14673] gi|323503944|gb|EGB19758.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14673] Length = 347 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 164/339 (48%), Gaps = 17/339 (5%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 ++ +RM+N + ++N +KY W Y A NN W+P E+ + D+ K LT Sbjct: 16 TDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDV---KDYPLLT 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER + L F +S+ N+ AI +++ E L Q F+EAVHS ++ Y++ Sbjct: 73 VGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQIFQEAVHSQSYSYML 131 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ-EFLQDLFVFYV 194 ++ + +Y+ K + L T + KD F++ L Y+ Sbjct: 132 DTICEPQTRNEVLYQ------WKNDGHLLARNTFIGGLYNEFQKDKTPFAFVKTLIANYI 185 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY+GF +LGR +KM G A++ +YI RDE+ HL +I +++ E P L++ Sbjct: 186 L-EGIYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFGSIIRELQTEEPSLFS 244 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 +E R M+ E EIA+ + GL Y++++ N RC +G EPL+ Sbjct: 245 REKTDCYREMIREGCEQEIAWGCYAIGDEVPGLTKQMITDYIRYLGNLRCSNLGFEPLYD 304 Query: 315 -YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 Y P W+S+ + K +FFE R T Y + + L Sbjct: 305 GYVHEPETMAWVSQYSNANMIKTDFFEARSTAYAKSSAL 343 >gi|223996990|ref|XP_002288168.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975276|gb|EED93604.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 335 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 87/317 (27%), Positives = 147/317 (46%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K W+ Y A + W E+ + +DL W+S L+ +ER + L FFA+S+ Sbjct: 28 LFPIKEPEIWKMYKKAEASFWTAEEIDLAEDLKDWES---LSINERHFVSHVLAFFAASD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ +++ E R + Q E +HS T+ +I + D E L N Sbjct: 85 GIVNENLTGNFSTEVTSAEARCFYGFQIAVENIHSETYSLLIDTYIKDAQEKDHLLNAIE 144 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP + KANWAL++ DA + + + EG++F F I Sbjct: 145 TVPCVQKKANWALRWC-------------DAGNASFAERCIAFAAVEGIFFSGSFCAIFW 191 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + +++ + P + + ++ A Sbjct: 192 LKKRGLMPGLCFSNELISRDEGLHCDFACLIYSKLVNQLP-------ESRIEEIITNAVE 244 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ QY++F A+R +G + + NPF WM E+I L+ Sbjct: 245 IEKEFVSDALPVELIGMNSKLMCQYIEFCADRLLGALGCKKHYMAV-NPFEWM-EMISLQ 302 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EY + Sbjct: 303 GKTNFFEKRVGEYAKSG 319 >gi|113195221|ref|YP_717351.1| ribonucleotide reductase small subunit [Taterapox virus] gi|90660497|gb|ABD97610.1| ribonucleotide reductase small subunit [Taterapox virus] Length = 319 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|312075738|ref|XP_003140550.1| ribonucleotide reductase M2 B [Loa loa] gi|307764288|gb|EFO23522.1| ribonucleotide reductase M2 B [Loa loa] Length = 350 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 94/316 (29%), Positives = 149/316 (47%), Gaps = 37/316 (11%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ W+ Y A + W EV + D W++ L D ER I R L FFA+S+ Sbjct: 58 IFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDWEN---LNDGERHFISRVLAFFAASD 114 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +V N+V + + PE R + Q E VHS SL LFN E Sbjct: 115 GIVNENLVNRFSQEVQVPEARFFYGFQIMIENVHSE------MSL------LFNAIYEFE 162 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + KA+WAL + + +P + + L F V EG++F FA I L + Sbjct: 163 FVKKKADWALCWIADIKAP------------YAERLIAFAAV-EGIFFSGSFAAIFWLKK 209 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 M G+ + I RDE LH +F + IK K +++ ++ EA +E Sbjct: 210 RGLMPGLTHSNELISRDEGLHRDFACLLYTYIK-------NKPSEERIYQIIREAVDIEK 262 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y E +P +G+N QY++++A+ ++ ++ Y++NPF +M E I ++ + Sbjct: 263 EYLTEALPVDLIGINCKLMCQYIEYVADHLLTELHCAKMY-YSDNPFDFM-ERISIEAKT 320 Query: 334 NFFETRVTEYQQGAEL 349 NFFE RV+EYQ+ L Sbjct: 321 NFFEKRVSEYQKAGVL 336 >gi|1808636|emb|CAA64118.1| G4L protein [Cowpox virus] Length = 319 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 87/315 (27%), Positives = 146/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + + M G+ + I RDE LH +F + HL ++ ++++ +A Sbjct: 177 LKKRDLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVKSIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|227541|prf||1706181A ribonucleotide reductase Length = 290 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 143/295 (48%), Gaps = 28/295 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W EV + D+ W+S L +ER I L FFA+S+ +V N+V + + E Sbjct: 3 WTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEA 59 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLS 170 R + Q E +HS + +I + D E LFN +P + KA+WAL++ Sbjct: 60 RCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI---- 115 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 G K+A + V + EG++F FA I L + M G+ + I RD Sbjct: 116 ------GDKEAT---YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRD 166 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E LH +F + HL K +++ R ++ A +E + E +P +G+N Sbjct: 167 EGLHCDFACLMFK-------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCT 219 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 220 LMKQYIEFVADRLMLELGFSKVFR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 272 >gi|255037048|ref|YP_003087669.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM 18053] gi|254949804|gb|ACT94504.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM 18053] Length = 331 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 87/317 (27%), Positives = 149/317 (47%), Gaps = 29/317 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K+ WE Y + W E+ + D+ W++ L+D ER I L FFA+S+ Sbjct: 21 LFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWEN---LSDGERHFISHVLAFFAASD 77 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + + E + + Q E +HS T+ +I + D E L Sbjct: 78 GIVNENLAVNFLSEVQYAEAKCFYGFQIAMENIHSETYSLLIDTYIKDSAEKDRLLRAIE 137 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL++ + SP F + + + EG++F F I Sbjct: 138 TIPCVQKKADWALKW---IDSPVFA------------ERIIAFAAVEGIFFSGSFCSIFW 182 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G++ + I RDE LH F + + H+ + Q++ ++ +A Sbjct: 183 LKKRGLMPGLSFSNELISRDEGLHCEFACLLYTK------HILNQLPQERVIEIMLDAVE 236 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+NA +QY+++IA+ ++G F + NPF +M E+I L Sbjct: 237 IEKEFVSEALPVSLIGMNADLMKQYIEYIADFWLERLGCPKQFG-SANPFDFM-ELISLP 294 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EYQ+ Sbjct: 295 GKTNFFEKRVGEYQKAG 311 >gi|153952438|ref|YP_001397460.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. doylei 269.97] gi|152939884|gb|ABS44625.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 340 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 12/311 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ + L+ D D L V + EG++FY+GF I +L RA KM Sbjct: 153 KNDFISSIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 +G A+ ++I RDE HL ++IN + E P L+ E K M +A LEI + Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVHKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336 +G E+Y+ ++ ++R I L+ L+ ++P W+ + +K NFF Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLYN-AKHPIKWVDDFSKFNDQKSNFF 323 Query: 337 ETRVTEYQQGA 347 E++VT Y +G+ Sbjct: 324 ESKVTNYSKGS 334 >gi|261335316|emb|CBH18310.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 90/327 (27%), Positives = 155/327 (47%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+KY W+KY A ++ W + + +D+ W+ L D ER IK Sbjct: 19 LLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVENIYLGNDMTDWEK---LDDGERHFIK 75 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + +D Sbjct: 76 HVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVVDPD 135 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E L + R +P I KA WA+++ S SF T V + EG++ Sbjct: 136 EKQRLLHAIRTIPCIEKKAKWAIEWIG--SQTSFPTR------------LVAFAAVEGIF 181 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ K + + Sbjct: 182 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEK------YIVNKLPRDR 235 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++NPF Sbjct: 236 VLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SKNPF 294 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M ++I L+ + NFFE +V EYQ+ Sbjct: 295 DFM-DMISLQGKTNFFEKKVGEYQKAG 320 >gi|154149104|ref|YP_001405803.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter hominis ATCC BAA-381] gi|153805113|gb|ABS52120.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter hominis ATCC BAA-381] Length = 340 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 86/311 (27%), Positives = 149/311 (47%), Gaps = 12/311 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV DD+ + LT E+ M + S +S Sbjct: 35 KYVWALKLWDIMEANTWFPREVDTTDDVRDYNF--NLTPAEKRMYELVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + +++ M + + Sbjct: 93 NNLADNINPYITAPEINAILARQAYEEANHSKSYAVMVEAICQNTDQIYEMEKFDDVLRE 152 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ + L+ + D+ L V + EG++FY+GF I +L R+ KM Sbjct: 153 KNDYISSIYEELAG--------EVDENKLLLAMVANQILEGIYFYSGFCSIYALARSGKM 204 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 +G A+ ++I RDE HL ++IN ++ E P L+ + K M +A LEI + Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFNDKNIAKIYEMFEKAGELEIKWGK 264 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336 +GL E+Y+ ++ + R IGL + +P W+ + +K NFF Sbjct: 265 YITQNQIMGLTDEIIEEYIHYLVDNRLSAIGLNKKYN-ARHPIKWVDDFAKFNDQKSNFF 323 Query: 337 ETRVTEYQQGA 347 E++VT Y +G+ Sbjct: 324 ESKVTNYSKGS 334 >gi|332247270|ref|XP_003272776.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 2 [Nomascus leucogenys] gi|332247272|ref|XP_003272777.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 3 [Nomascus leucogenys] Length = 297 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 146/303 (48%), Gaps = 28/303 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + D+ W+S L +ER I L FFA+S+ +V N+V Sbjct: 2 YKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + E R + Q E +HS + +I + D E LFN +P + KA+WA Sbjct: 59 QEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWA 118 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L++ G K+A + V + EG++F FA I L + M G+ Sbjct: 119 LRWI----------GDKEAT---YGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTF 165 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I RDE LH +F + HL K +++ R ++ A +E + E +P Sbjct: 166 SNELISRDEGLHCDFACLMFK-------HLVHKPSEERVREIIINAVRIEQEFLTEALPV 218 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 +G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV E Sbjct: 219 KLIGMNCILMKQYIEFVADRLMLELGFGKVFR-VENPFDFM-ENISLEGKTNFFEKRVGE 276 Query: 343 YQQ 345 YQ+ Sbjct: 277 YQR 279 >gi|66475262|ref|XP_627447.1| ribonucleotide reductase small subunit, duplicated adjacent gene [Cryptosporidium parvum Iowa II] gi|9652154|gb|AAF91416.1|AF275635_1 ribonucleotide reductase R2 subunit [Cryptosporidium parvum] gi|46228920|gb|EAK89769.1| ribonucleotide reductase small subunit, duplicated adjacent gene [Cryptosporidium parvum Iowa II] Length = 352 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 94/340 (27%), Positives = 160/340 (47%), Gaps = 31/340 (9%) Query: 12 AGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E ++N ++ ML +R + N+L L W Y A + W+ E+ + D W+S Sbjct: 24 VNEVKINQVNEPMLKYSRENRNELKELIKD-IWSMYKKAEASFWVTEEIDLSQDTRDWES 82 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D ER IK L FFA+S+ +V N+ + R + PE R Y Q E +HS T Sbjct: 83 ---LKDPERHFIKYVLAFFAASDGIVMENLAVNFLREIQIPEARMYYAFQMSIEQIHSET 139 Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + E LF + ++ KA WA ++ ++++ F + Sbjct: 140 YSLLIDRYITEIKERQMLFEAISHIEAVKKKAEWATKWM-------------NSERSFAE 186 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + F V EG+ F F I L + M G+ + I RDE LH +F + +K Sbjct: 187 RIIGFCAV-EGILFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHADFACLIYKALKF 245 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 + P + + ++ EA +E + +++P +G+N+ QY++F+A+R + Sbjct: 246 KLP-------APRVQQIISEAVEVERNFLCDSLPVDLIGMNSRLMAQYIEFVADRLLFAL 298 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 + ++ + NPF WM ++I L+ + NFFE RV EYQ Sbjct: 299 DIPKIYNVS-NPFDWM-DLISLQGKTNFFEKRVGEYQMAG 336 >gi|255724924|ref|XP_002547391.1| ribonucleoside-diphosphate reductase small chain 1 [Candida tropicalis MYA-3404] gi|240135282|gb|EER34836.1| ribonucleoside-diphosphate reductase small chain 1 [Candida tropicalis MYA-3404] Length = 387 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 90/318 (28%), Positives = 150/318 (47%), Gaps = 29/318 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W Y + + W E+ + D W++K + DER I R L FFA+S+ Sbjct: 76 VFPIKYPEIWTFYKKSVASFWTAEEIDLSKDFDDWENK--MNKDERFFISRVLAFFAASD 133 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + PE + Q E +HS T+ +I + D E LFN Sbjct: 134 GIVNENLVENFCTEVKLPEAKSVYKFQIMMENIHSETYSLLIETYFKDPKEADFLFNAID 193 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + I KA+WA+++ Q D + F + L F + EG++F FA I Sbjct: 194 NIKYIGEKADWAIRWIQ------------DEEALFAERLVAFAAI-EGIFFSGSFASIFW 240 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTKEFQQKSRTMLHEAT 269 L + M G+ + I RDE +H ++ + + ++ + +P + K ++ EA Sbjct: 241 LKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLENKPDPSIIEK--------IITEAV 292 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E Y + +P +G+N QY+++ A+R G + + T NPF +M E I L Sbjct: 293 SIEKKYFSDALPVSLLGMNCDLMCQYVEYCADRLLVAFGNDKYYNVT-NPFDFM-ENISL 350 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFE RV++YQ+ Sbjct: 351 AGKTNFFEKRVSDYQRAG 368 >gi|301629349|ref|XP_002943805.1| PREDICTED: ribonucleoside-diphosphate reductase subunit beta-like, partial [Xenopus (Silurana) tropicalis] Length = 120 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 54/86 (62%), Positives = 70/86 (81%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 ++RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 35 QRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 94 Query: 74 LTDDERLMIKRNLGFFASSESLVANN 99 LT+DER +++RNLGFF +++SL ANN Sbjct: 95 LTEDERRIVRRNLGFFTTADSLAANN 120 >gi|83859670|ref|ZP_00953190.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis alexandrii HTCC2633] gi|83852029|gb|EAP89883.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis alexandrii HTCC2633] Length = 348 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 92/333 (27%), Positives = 156/333 (46%), Gaps = 26/333 (7%) Query: 24 MLNARSDVNQLL-------PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 ML SD LL P +Y WA++ + HW+P EVP+ +D W +K LTD Sbjct: 1 MLTVASDRPGLLTPSLTYKPFRYPWAYDFWKVQSQVHWLPEEVPLGEDCKDWATK--LTD 58 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYII 135 ER ++ + FF S+ V N + Y L P E R L + E +H + ++ Sbjct: 59 KERNLLTQIFRFFTQSDVEVGAN-YMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLL 117 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 ++G+ + E F+ + E + AK ++ ++ + D++ L + VF Sbjct: 118 ETIGMPDTE-FSAFMEYEEMAAKHDYLGKFGC------------ETDRDILTSMAVFGGF 164 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG+ + FA +++ R NKM G+ + + +RDESLH + + + E L TK Sbjct: 165 TEGLQLFASFAMLMNFPRFNKMKGMGQIVSWSVRDESLHCEGMMKLFHTFAEETGAL-TK 223 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + LE + G V G+ + Y+++IA+ R Q+ L ++ Sbjct: 224 GVKDDIADCCKTVVSLEDKFIELAFEAGEVEGMTPEDIKNYIRYIADWRMKQLKLPTIYG 283 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 E+P PW++E+++ + NFFE R TEY +GA Sbjct: 284 VEEHPIPWLTEILNGVEHANFFEARATEYSKGA 316 >gi|74025548|ref|XP_829340.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834726|gb|EAN80228.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] Length = 337 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 90/327 (27%), Positives = 154/327 (47%), Gaps = 28/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER IK Sbjct: 19 LLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWEK---LDDGERHFIK 75 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + PE R + Q E +H T+ +I + +D Sbjct: 76 HVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHCETYSVLIDTYVVDPD 135 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E L + R +P I KA WA+++ S SF T V + EG++ Sbjct: 136 EKQRLLHAIRTIPCIEKKAKWAIEWIG--SQTSFPTR------------LVAFAAVEGIF 181 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + ++ K + + Sbjct: 182 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEK------YIVNKLPRDR 235 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ A +E + + +P +G+N+ QY++F+A+R +G + ++NPF Sbjct: 236 VLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHCN-SKNPF 294 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 +M ++I L+ + NFFE +V EYQ+ Sbjct: 295 DFM-DMISLQGKTNFFEKKVGEYQKAG 320 >gi|19074323|ref|NP_585829.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon cuniculi GB-M1] gi|51701822|sp|Q8SRR2|RIR2_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|19068965|emb|CAD25433.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon cuniculi GB-M1] Length = 325 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 93/326 (28%), Positives = 155/326 (47%), Gaps = 30/326 (9%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L+ + + LLP+KY W+ Y A ++ W EV + D+ W N ER I Sbjct: 10 LLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDWGKLNA---KERHFIS 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+V + E R + Q E +HS + +I + D Sbjct: 67 YVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGFQMAIENIHSEMYSLLIDTYIRDND 126 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF+ R +PS+ KA+WA+++ + D + +F L F V EG++ Sbjct: 127 EKNFLFDAIRTIPSVKEKADWAIRWIE------------DKNSDFATRLVAFACV-EGIF 173 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F FA I L + M G+ + I RDE LH F + H K+ + Sbjct: 174 FSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLL---------HYHLKKKCNR 224 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + ++ +A +E + E++P +G+N +Y++F+A+R +G E ++ T NPF Sbjct: 225 IKEVVMDAVEIEKKFLSESLPVNLIGMNCNLMCRYIEFVADRLLENLGEERVYNAT-NPF 283 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346 +M E I L + NFF+ R ++YQ+ Sbjct: 284 DFM-ENISLVGKTNFFDKRESQYQKA 308 >gi|10344|emb|CAA26307.1| unnamed protein product [Spisula solidissima] Length = 300 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 144/303 (47%), Gaps = 28/303 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + D+A W+S L +E+ I L FFA+S+ +V N+V Sbjct: 2 YKKAEASFWTAEEVDLSKDMAHWES---LKKEEKHFISHVLAFFAASDGIVNENLVERFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + E R + Q E +HS + +I + D E LFN +P + KA+WA Sbjct: 59 KEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADWA 118 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 +++ SS + V + EG++F FA I L + M G+ Sbjct: 119 MRWINDDSSS-------------YAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLTF 165 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I RDE LH +F + + HL K Q++ ++ EA +E + E +P Sbjct: 166 SNELISRDEGLHCDFACLMFS-------HLVNKPSQERIHQIIDEAVKIEQVFLTEALPC 218 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 +G+N QY++F+A+R ++ + L+ ENPF +M E I L+ + NFFE RV E Sbjct: 219 RLIGMNCDLMRQYIEFVADRLLLELKCDKLYN-KENPFDFM-EHISLEGKTNFFEKRVGE 276 Query: 343 YQQ 345 YQ+ Sbjct: 277 YQK 279 >gi|254293199|ref|YP_003059222.1| ribonucleotide-diphosphate reductase subunit beta [Hirschia baltica ATCC 49814] gi|254041730|gb|ACT58525.1| Ribonucleoside-diphosphate reductase [Hirschia baltica ATCC 49814] Length = 345 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 87/314 (27%), Positives = 150/314 (47%), Gaps = 19/314 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HW+P EVP+ +D W K L D ER ++ + FF S+ Sbjct: 21 PFRYPWAYDFWKIQQQVHWVPEEVPLGEDCKDWAGK--LNDKERNLLTQIFRFFTQSDVE 78 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + Y L P E R L + E VH + ++ ++G+ + E F+ + E Sbjct: 79 VGAN-YMENYMPLFKPVEVRMMLAAFSNMETVHIAAYALLLETIGMPDSE-FSAFMEYEE 136 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + AK ++ +++ D + + L + VF EG+ + FA +++ R Sbjct: 137 MAAKHDYLGKFSV------------DTEADILTSMAVFGGFTEGLQLFASFAMLMNFPRF 184 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDESLH + + + E L TK + LE Sbjct: 185 NKMKGMGQIVSWSVRDESLHCEGMMKMFHTYAEETGAL-TKTVKDDITDCCQTVVKLEDK 243 Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V G+ + Y+++IA+ R Q+ L+P++ E+P PW++E+++ + Sbjct: 244 FIDLAFEAGEVEGMTPEDIKNYIRYIADWRLKQLKLDPVYGVDEHPIPWLTEILNGVEHA 303 Query: 334 NFFETRVTEYQQGA 347 NFFE R TEY +GA Sbjct: 304 NFFEARATEYSKGA 317 >gi|885759|gb|AAA69374.1| E4L [Variola virus] gi|5830589|emb|CAB54628.1| E4L protein [Variola minor virus] gi|94483674|gb|ABF22791.1| ribonucleotide reductase small subunit [Variola virus] gi|94484287|gb|ABF23401.1| ribonucleotide reductase small subunit [Variola virus] gi|94485692|gb|ABF24799.1| ribonucleotide reductase small subunit [Variola virus] gi|94486095|gb|ABF25200.1| ribonucleotide reductase small subunit [Variola virus] gi|94486298|gb|ABF25402.1| ribonucleotide reductase small subunit [Variola virus] gi|94486501|gb|ABF25604.1| ribonucleotide reductase small subunit [Variola virus] gi|94486703|gb|ABF25805.1| ribonucleotide reductase small subunit [Variola virus] gi|94486906|gb|ABF26007.1| ribonucleotide reductase small subunit [Variola virus] gi|94487312|gb|ABF26411.1| ribonucleotide reductase small subunit [Variola virus] gi|94487921|gb|ABF27017.1| ribonucleotide reductase small subunit [Variola virus] gi|94489931|gb|ABF29017.1| ribonucleotide reductase small subunit [Variola virus] gi|109724476|gb|ABG43600.1| ribonucleotide reductase small subunit [Variola virus] gi|156635085|gb|ABU91534.1| ribonucleotide reductase small subunit [Variola virus] Length = 319 Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|149185037|ref|ZP_01863354.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21] gi|148831148|gb|EDL49582.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21] Length = 352 Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 85/313 (27%), Positives = 152/313 (48%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HWMP EVP+ +D W K LT+ ER ++ + FF ++ Sbjct: 12 PFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQK--LTEHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + R E + L + E VH + +++ ++G+ E E ++ + + + Sbjct: 70 VQDCYHDKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFLDYEEM 128 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K N+ Q+ D D++ + L +F EGM + FA +++ R N Sbjct: 129 ADKHNYMQQFG------------VDNDEDIARTLAMFGAFTEGMQLFASFAMLMNFPRFN 176 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH I + ++ E L TK ++ + + LE + Sbjct: 177 KMKGMGQIVSWSIRDESLHCEGIIRMFHEFVRERDCL-TKAVKEDIIDICQKTVRLEDNF 235 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G V G+ ++Y+++IA+ R Q+ L+P++ ++P PW++ +I+ + N Sbjct: 236 IDLAFEMGPVSGMTPKDIKKYIRYIADWRLGQLNLDPIYMVDDHPLPWLAPLINGVEHAN 295 Query: 335 FFETRVTEYQQGA 347 FFE R TEY +GA Sbjct: 296 FFEQRATEYSKGA 308 >gi|239826135|ref|YP_002948759.1| ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70] gi|239806428|gb|ACS23493.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70] Length = 346 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 88/329 (26%), Positives = 159/329 (48%), Gaps = 19/329 (5%) Query: 23 RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 R++N +S +V + Y WA+ KY N W P E+ M D+ K LT+ E+ Sbjct: 21 RIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDV---KQFPNLTEREQDA 77 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--G 139 + +G A +S + + + ++++ ++ A +E +H+H++ Y+++SL Sbjct: 78 FLKIIGLLALLDS-IQTDYAGRVADYITDSSINALMIMLAQQEVIHNHSYSYVLSSLVPK 136 Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 + E+F +R P + + ++ + + ++ + E L V+ V+ EG+ Sbjct: 137 SKQDEVFEFWRNEPILRKRNDFV--------TNGYKAFAENPNVENLLKSIVYDVILEGL 188 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 +FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E Q Sbjct: 189 FFYSGFAFFYNLARNQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYNTPELAQ 248 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTEN 318 R +A LEI +A+ + G++ Y++F AN R HQ+G + P Y N Sbjct: 249 FVRETFIKAAKLEIEWANYIIGNDIDGIDMHDLSAYIKFYANVRAHQLGFDRPFDGYRTN 308 Query: 319 PFPWMS--EVIDLKKEKNFFETRVTEYQQ 345 P W+ E +DL K +FFE + +Y + Sbjct: 309 PLRWIKAYEEVDLGK-SDFFEQKSRQYTK 336 >gi|885717|gb|AAA69333.1| C8L [Variola virus] gi|885826|gb|AAA69439.1| C8L [Variola virus] gi|94483878|gb|ABF22994.1| ribonucleotide reductase small subunit [Variola virus] gi|94484081|gb|ABF23196.1| ribonucleotide reductase small subunit [Variola virus] gi|94485084|gb|ABF24194.1| ribonucleotide reductase small subunit [Variola virus] gi|94485286|gb|ABF24395.1| ribonucleotide reductase small subunit [Variola virus] gi|94485489|gb|ABF24597.1| ribonucleotide reductase small subunit [Variola virus] gi|94485894|gb|ABF25000.1| ribonucleotide reductase small subunit [Variola virus] gi|94487109|gb|ABF26209.1| ribonucleotide reductase small subunit [Variola virus] gi|94487515|gb|ABF26613.1| ribonucleotide reductase small subunit [Variola virus] gi|94487716|gb|ABF26813.1| ribonucleotide reductase small subunit [Variola virus] gi|94488123|gb|ABF27218.1| ribonucleotide reductase small subunit [Variola virus] gi|94488323|gb|ABF27417.1| ribonucleotide reductase small subunit [Variola virus] gi|94488523|gb|ABF27616.1| ribonucleotide reductase small subunit [Variola virus] gi|94488724|gb|ABF27816.1| ribonucleotide reductase small subunit [Variola virus] gi|94488925|gb|ABF28016.1| ribonucleotide reductase small subunit [Variola virus] gi|94489125|gb|ABF28215.1| ribonucleotide reductase small subunit [Variola virus] gi|94489324|gb|ABF28413.1| ribonucleotide reductase small subunit [Variola virus] gi|94489527|gb|ABF28615.1| ribonucleotide reductase small subunit [Variola virus] gi|94489726|gb|ABF28813.1| ribonucleotide reductase small subunit [Variola virus] gi|94490135|gb|ABF29220.1| ribonucleotide reductase small subunit [Variola virus] gi|109724070|gb|ABG43196.1| ribonucleotide reductase small subunit [Variola virus] gi|109724681|gb|ABG43804.1| ribonucleotide reductase small subunit [Variola virus] gi|109724885|gb|ABG44007.1| ribonucleotide reductase small subunit [Variola virus] gi|109725088|gb|ABG44209.1| ribonucleotide reductase small subunit [Variola virus] gi|109725293|gb|ABG44413.1| ribonucleotide reductase small subunit [Variola virus] gi|109725496|gb|ABG44615.1| ribonucleotide reductase small subunit [Variola virus] gi|109725700|gb|ABG44818.1| ribonucleotide reductase small subunit [Variola virus] gi|109725903|gb|ABG45020.1| ribonucleotide reductase small subunit [Variola virus] gi|109726107|gb|ABG45223.1| ribonucleotide reductase small subunit [Variola virus] gi|109726310|gb|ABG45425.1| ribonucleotide reductase small subunit [Variola virus] gi|109726513|gb|ABG45627.1| ribonucleotide reductase small subunit [Variola virus] gi|156635013|gb|ABU91466.1| ribonucleotide reductase small subunit [Variola virus] gi|156635031|gb|ABU91483.1| ribonucleotide reductase small subunit [Variola virus] gi|156635049|gb|ABU91500.1| ribonucleotide reductase small subunit [Variola virus] gi|156635067|gb|ABU91517.1| ribonucleotide reductase small subunit [Variola virus] gi|156635103|gb|ABU91551.1| ribonucleotide reductase small subunit [Variola virus] gi|156635121|gb|ABU91568.1| ribonucleotide reductase small subunit [Variola virus] gi|156635139|gb|ABU91585.1| ribonucleotide reductase small subunit [Variola virus] gi|156635158|gb|ABU91603.1| ribonucleotide reductase small subunit [Variola virus] gi|156635176|gb|ABU91620.1| ribonucleotide reductase small subunit [Variola virus] gi|156635194|gb|ABU91637.1| ribonucleotide reductase small subunit [Variola virus] gi|156635212|gb|ABU91654.1| ribonucleotide reductase small subunit [Variola virus] gi|156635230|gb|ABU91671.1| ribonucleotide reductase small subunit [Variola virus] gi|156635248|gb|ABU91688.1| ribonucleotide reductase small subunit [Variola virus] gi|156635266|gb|ABU91705.1| ribonucleotide reductase small subunit [Variola virus] gi|156635284|gb|ABU91722.1| ribonucleotide reductase small subunit [Variola virus] gi|156635320|gb|ABU91756.1| ribonucleotide reductase small subunit [Variola virus] gi|156635338|gb|ABU91773.1| ribonucleotide reductase small subunit [Variola virus] gi|156635356|gb|ABU91790.1| ribonucleotide reductase small subunit [Variola virus] gi|156635374|gb|ABU91807.1| ribonucleotide reductase small subunit [Variola virus] gi|156635392|gb|ABU91824.1| ribonucleotide reductase small subunit [Variola virus] gi|157739431|gb|ABU91739.1| ribonucleotide reductase small subunit [Variola virus] Length = 319 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIKFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|169824933|ref|YP_001692544.1| ribonucleotide-diphosphate reductase subunit beta [Finegoldia magna ATCC 29328] gi|167831738|dbj|BAG08654.1| ribonucleoside-diphosphate reductase beta subunit [Finegoldia magna ATCC 29328] Length = 354 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 90/341 (26%), Positives = 170/341 (49%), Gaps = 15/341 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ K L+ Sbjct: 23 IELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDI---KDYRNLS 79 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DE++ + L F +SL + + +++ E L QAF+E++HS ++ YI+ Sbjct: 80 EDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYIL 138 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 ++ E +Y+ + L+ + + K +++ F++ L Y++ Sbjct: 139 DTICSPEERTDILYQ-----WKDDEFLLERNRFIGDQYNDFFEKKSERNFMKALIANYIL 193 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K E P L+T+ Sbjct: 194 -EGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKERPELFTE 252 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 E + + M+ + EI +A + + GL+ E Y++++ N R +G ++ Sbjct: 253 EKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLGFGVIYPG 312 Query: 316 TENPFP---WMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 E P W+SE D K K +FFE + + Y + A ++ D Sbjct: 313 YEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 353 >gi|325261084|ref|ZP_08127822.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. D5] gi|324032538|gb|EGB93815.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. D5] Length = 347 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 93/346 (26%), Positives = 163/346 (47%), Gaps = 15/346 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E + V ++M+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNPEGDIEVTKRKMIGGNTTNLNDFNHMKYNWVSDWYRQAMNNFWVPEEINLSVDIKD 67 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +K L ER + L F +S+ N+ I +++ E L Q F+EAVH Sbjct: 68 YKM---LPAAERRAYDKILSFLIFLDSIQTANLP-NIGEYITANEVNLCLSIQTFQEAVH 123 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y++ ++ + +Y+ K + L + ++ E L Sbjct: 124 SQSYSYMLDTICEPQERNAVLYQ------WKEDRHLLERNEFIGNLYNAFQEEKSPEMLA 177 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + EG++FY+GF +LGR +M G ++ +YI RDE+ HL ++ ++K Sbjct: 178 CTLIANYILEGIYFYSGFMFFYNLGRNRRMPGSVQEIRYINRDENTHLWLFRSILMELKK 237 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P L+T E +K R+M+ E EI + H + GLN Y+Q++ N RC + Sbjct: 238 EEPWLFTAEKTEKYRSMIREGCEQEIRWGHYVIGDDIQGLNREMITDYIQYLGNLRCRGL 297 Query: 308 GLEPLFKYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 LEP+++ E W+S+ + K +FFE R T Y + + L Sbjct: 298 ELEPVYEGHEKEPESMSWVSQFSNANMIKTDFFEARSTAYAKSSAL 343 >gi|303234233|ref|ZP_07320879.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna BVS033A4] gi|302494774|gb|EFL54534.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna BVS033A4] Length = 347 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 90/341 (26%), Positives = 170/341 (49%), Gaps = 15/341 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ K L+ Sbjct: 16 IELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDI---KDYRNLS 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DE++ + L F +SL + + +++ E L QAF+E++HS ++ YI+ Sbjct: 73 EDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYIL 131 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 ++ E +Y+ + L+ + + K +++ F++ L Y++ Sbjct: 132 DTICSPEERTDILYQ-----WKDDEFLLERNRFIGDQYNDFFEKKSERNFMKALIANYIL 186 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K E P L+T+ Sbjct: 187 -EGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKERPELFTE 245 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 E + + M+ + EI +A + + GL+ E Y++++ N R +G ++ Sbjct: 246 EKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLGFGVIYPG 305 Query: 316 TENPFP---WMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 E P W+SE D K K +FFE + + Y + A ++ D Sbjct: 306 YEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 346 >gi|20178418|ref|NP_619839.1| CPXV051 protein [Cowpox virus] gi|20153036|gb|AAM13497.1|AF482758_48 CPXV051 protein [Cowpox virus] Length = 333 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT +E+ IK L FFA+S+ Sbjct: 28 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPNEKHFIKHVLAFFAASD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 85 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + V + EG++F FA I Sbjct: 145 TMPCVKKKADWAQKWIH--------------DSASYGERLVAFAAVEGIFFSGSFASIFW 190 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 191 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRSIITDAVS 243 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 244 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 301 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 302 GKTNFFEKRVGEYQK 316 >gi|18640102|ref|NP_570176.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus] gi|18448509|gb|AAL69755.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus] Length = 320 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 146/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y + + W EV + DL W + LT DE+ IK L FFASS+ Sbjct: 14 IFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYFIKHILAFFASSD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ Y + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRDNIEKMHLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KA+WA ++ + + + V + EG++F FA I Sbjct: 131 TMECVKKKADWARKWISS--------------NKVYGERVVAFAAVEGIFFSGSFAAIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + + M G+ + I RDE LH +F + HL ++ +++ +A Sbjct: 177 IKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSKEVITSIIIDAVN 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N QY++F+A+R ++G E +F NPF +M E I L+ Sbjct: 230 IEKEFLTVAIPVDLIGMNCCLMSQYIEFVADRLLTELGCEKVFN-VYNPFSFM-EYISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV+EYQ+ Sbjct: 288 GKTNFFERRVSEYQK 302 >gi|37551487|gb|AAQ93139.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|38348909|gb|AAR17885.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|88900660|gb|ABD57572.1| VACV040 [Vaccinia virus] gi|90819703|gb|ABD98513.1| VACV-DUKE-051 [Vaccinia virus] Length = 319 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R ++ +A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRYIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|323450429|gb|EGB06310.1| hypothetical protein AURANDRAFT_65685 [Aureococcus anophagefferens] Length = 349 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 27/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+++ W+ Y A + W E+ + D+ W K L D ER IK L FFA+S+ Sbjct: 41 LFPIEHDDVWQMYKKAEASFWTAEEIDLCHDIKDWDQK--LNDKERHFIKHVLAFFAASD 98 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYR 150 +V N+ + E R + Q E +HS + +I + D + E Sbjct: 99 GIVNENLAQNFATEVQWAEARCFYGFQIAIENIHSEVYSLLIDTYIRDAKEKHECLTAID 158 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P +T KA WAL++ D D+ + + + EG++F F + Sbjct: 159 TMPCVTKKAQWALRWC-------------DPDRASFAERIIAFAAVEGIFFSGSFCAVFW 205 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G++ + I RDE +H +F + ++++ + P + ++ +A Sbjct: 206 LKKRGLMPGLSFSNELISRDEGMHCDFACLLYSKLRNKLP-------VETINALIGDAVT 258 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N+ + QY++F A+R +G L++ T NPF WM E+I L+ Sbjct: 259 IEKEFVVSALPVELIGMNSRTMCQYIEFCADRLLLALGCPKLYEAT-NPFDWM-ELISLQ 316 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE RV EY + Sbjct: 317 GKTNFFEKRVGEYAKSG 333 >gi|210616053|ref|ZP_03290925.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787] gi|210149961|gb|EEA80970.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787] Length = 355 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/340 (27%), Positives = 166/340 (48%), Gaps = 19/340 (5%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + V ++M+ + ++N +KY W Y A NN W+P E+ + D+ K L Sbjct: 24 IQVQKRKMIGGNTTNLNDFNNMKYTWVSGWYRQAMNNFWIPEEINLGVDI---KDYRNLP 80 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + L F +S+ N+ I +++ E L QAF+EAVHS ++ Y++ Sbjct: 81 KAEKRAYDKILSFLIFLDSIQTANLP-GISEYITANEVNLCLSIQAFQEAVHSQSYSYML 139 Query: 136 TSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ + E+ ++E + A+ ++ L + +F T + E L V Sbjct: 140 DTICEPQERNEVLYQWKEDEHLLARN----EFIGNLYN-AFQT---EKSMEMLVKTIVAN 191 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY+GF +LGR M G ++ +YI RDE+ HL +++ ++K E P L+ Sbjct: 192 YILEGIYFYSGFMFFYNLGRNQLMPGSVQEIRYINRDENTHLWLFRNILIELKKEQPDLF 251 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T+++ + R+M+ E EI + H + GLN Y+Q++ N RC +G P++ Sbjct: 252 TEQYIDEYRSMIKEGCEQEIKWGHYVIGDDVQGLNREMITDYVQYLGNLRCTNLGFAPIY 311 Query: 314 KYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 + E W+S+ + K +FFE R T Y + + L Sbjct: 312 EGHETEPESMRWVSQYSNANAIKTDFFEARSTAYAKSSAL 351 >gi|57168357|ref|ZP_00367491.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter coli RM2228] gi|305432773|ref|ZP_07401932.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter coli JV20] gi|57020165|gb|EAL56839.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter coli RM2228] gi|304444170|gb|EFM36824.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter coli JV20] Length = 340 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/311 (27%), Positives = 148/311 (47%), Gaps = 12/311 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ + L+ D D L V + EG++FY+GF I +L RA KM Sbjct: 153 KNDFISSIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 +G A+ ++I RDE HL ++IN ++ E P L+ + K M +A LEI + Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFNENNINKIYDMFKKAGDLEIKWGK 264 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336 +G E+Y+ ++ ++R I L+ ++ ++P W+ + +K NFF Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLVAINLDKIYN-AKHPIKWVDDFSKFNDQKSNFF 323 Query: 337 ETRVTEYQQGA 347 E++VT Y +G+ Sbjct: 324 ESKVTNYSKGS 334 >gi|325831705|ref|ZP_08164922.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp. HGA1] gi|325486576|gb|EGC89025.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp. HGA1] Length = 347 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 97/340 (28%), Positives = 167/340 (49%), Gaps = 19/340 (5%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V D+RM+ + ++N +KY W + Y A NN W+P E+ + D+ K L Sbjct: 16 TDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDI---KDYRKLP 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER + L F +SL + N+ A+ +++ E L Q F+E VHS ++ Y++ Sbjct: 73 ASERRAYDKILSFLIFLDSLQSANLP-AVGEYITANEVNLCLAIQTFQETVHSQSYSYML 131 Query: 136 TSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ + ++ ++E + A+ ++ L + D E L + V Sbjct: 132 DTICEPQERNDVLYQWKEDEHLLARN----EFIGNL----YNQFQDDKSPEALARVLVAN 183 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY+GF +LGR N M G ++ +YI RDE+ HL +++ ++K E P L+ Sbjct: 184 YILEGVYFYSGFMFFYNLGRNNLMPGSVQEIRYINRDENTHLWLFRNILLELKEEEPELF 243 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T E ++ R M+ E EI + H + GLN Y+Q++ N RC Q+G EPL+ Sbjct: 244 TPELVEEYRAMIKEGCEQEIRWGHYAIGDEVAGLNKQMVTDYIQYLGNLRCTQLGFEPLY 303 Query: 314 KYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 + E W+S+ + K +FFE R T Y + + L Sbjct: 304 EGHEREPESMSWVSQFSNANMIKTDFFEARSTAYAKSSAL 343 >gi|322510501|gb|ADX05815.1| putative ribonucleotide reductase small subunit [Organic Lake phycodnavirus 1] Length = 324 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/313 (30%), Positives = 153/313 (48%), Gaps = 28/313 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ W+ Y + W E+ DL W N L +E+ IK L FFASS+ Sbjct: 19 MFPIVDEAIWKMYKKQVDCFWRAEEIDTSKDLNHW---NKLQPEEQYYIKMILAFFASSD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ L + E R + Q E +HS T+ +I S DE E LF+ Sbjct: 76 GIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDSYIKDENEKNKLFHSLE 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 P I K WA+++ D F L F V EG++F F I Sbjct: 136 HFPCIEKKGKWAMKWIN------------DKKSNFSTRLVAFACV-EGIFFSGAFCSIYW 182 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE+LH F + + ++++ K ++K R ++ EA + Sbjct: 183 LKKRGIMPGLTFSNELISRDEALHTEFAVHLFHKLE-------KKINKKKIREIIEEAVV 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E++P +G+N+ QY++++A+R Q+G E +++ T NPF +M E+I L+ Sbjct: 236 IEKEFIVESLPCRLIGMNSDLMTQYIEYVADRLMIQLGCEEIYR-TNNPFDFM-ELISLE 293 Query: 331 KEKNFFETRVTEY 343 ++ NFFE+RV+EY Sbjct: 294 QKTNFFESRVSEY 306 >gi|315637824|ref|ZP_07893014.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter upsaliensis JV21] gi|315482065|gb|EFU72679.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter upsaliensis JV21] Length = 340 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 12/311 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTRDALDYRC--NLTAAEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDATLRE 152 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ + L+ D D L V + EG++FY+GF I +L RA KM Sbjct: 153 KNDFISGIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 +G A+ ++I RDE HL ++IN ++ E P L+ ++ K +M A LEI + Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFNEQNIDKIYSMFKRAGELEIKWGK 264 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336 +G E+Y+ ++ ++R I L+ ++ ++P W+ + +K NFF Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLIAINLDRIYN-AKHPIKWVDDFSKFNDQKSNFF 323 Query: 337 ETRVTEYQQGA 347 E++VT Y +G+ Sbjct: 324 ESKVTNYSKGS 334 >gi|57505748|ref|ZP_00371674.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter upsaliensis RM3195] gi|57016021|gb|EAL52809.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter upsaliensis RM3195] Length = 340 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 12/311 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTRDALDYRCH--LTAAEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVETICDNTDLIYEMEKHDATLRE 152 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ + L+ D D L V + EG++FY+GF I +L RA KM Sbjct: 153 KNDFISGIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 +G A+ ++I RDE HL ++IN ++ E P L+ ++ K +M A LEI + Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFNEQNIDKIYSMFKRAGELEIKWGK 264 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336 +G E+Y+ ++ ++R I L+ ++ ++P W+ + +K NFF Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLIAINLDKIYN-AKHPIKWVDDFSKFNDQKSNFF 323 Query: 337 ETRVTEYQQGA 347 E++VT Y +G+ Sbjct: 324 ESKVTNYSKGS 334 >gi|297587320|ref|ZP_06945965.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna ATCC 53516] gi|297575301|gb|EFH94020.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna ATCC 53516] Length = 354 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/341 (26%), Positives = 171/341 (50%), Gaps = 15/341 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ K L+ Sbjct: 23 IELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDI---KDYRNLS 79 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DE++ + L F +SL + + +++ E L QAF+E++HS ++ YI+ Sbjct: 80 EDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHSQSYSYIL 138 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 ++ E +Y+ + L+ + + + +++ F++ L Y++ Sbjct: 139 DTICSPEERTDILYQ-----WKDDEFLLERNRFIGDQYNDFFEEKSERNFMKALIANYIL 193 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K E P L+T+ Sbjct: 194 -EGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKERPELFTE 252 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 E + + M+ + + EI +A + + GL+ E Y++++ N R +G ++ Sbjct: 253 EKNAQYKEMIKQGSEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLGFGVIYPG 312 Query: 316 TENPFP---WMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 E P W+SE D K K +FFE + + Y + A ++ D Sbjct: 313 YEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 353 >gi|266919|sp|P29883|RIR2_VACCP RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|335710|gb|AAA48294.1| F14 [Vaccinia virus] Length = 319 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 146/316 (46%), Gaps = 31/316 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N +T DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKVTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQ-YLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 +V N+ + E R Y R A E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFRMAIEN-IHSEMYSLLIDTYVKDSNEKNYLFNAI 129 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 130 ETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIF 175 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 176 WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRSIITDAV 228 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L Sbjct: 229 SIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISL 286 Query: 330 KKEKNFFETRVTEYQQ 345 + + NFFE RV EYQ+ Sbjct: 287 EGKTNFFEKRVGEYQK 302 >gi|333030473|ref|ZP_08458534.1| ribonucleotide reductase [Bacteroides coprosuis DSM 18011] gi|332741070|gb|EGJ71552.1| ribonucleotide reductase [Bacteroides coprosuis DSM 18011] Length = 347 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/338 (26%), Positives = 164/338 (48%), Gaps = 15/338 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 ++V+ +RM+N + ++N +KYGW Y A NN W+P E+ M D+ K L+ Sbjct: 16 IDVNKRRMINGNTTNMNDFNNMKYGWVSNWYRQAMNNFWIPEEINMSQDV---KDYRNLS 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ R L F +S+ N+ + +++ E L QAF+EAVHS ++ Y++ Sbjct: 73 GAEKRAYDRTLSFLIFLDSIQTANLPY-VGEYVTANEVNLCLTIQAFQEAVHSQSYSYML 131 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 S+ E +Y+ L+ + + + + L+ + Y++ Sbjct: 132 DSICSPEERERILYQ-----WRNDEHLLKRNKFIGDIYNEFQLNKSTHQLLKTMVANYIL 186 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +++ E P L+T Sbjct: 187 -EGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFQSIILELRKEEPQLFTV 245 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-K 314 E + R M+ E E+A+ + + GL Y++++AN RC +G E L+ Sbjct: 246 EAIAEFRAMIKEGAEQEMAWGEYVIEEEIEGLTQEMVSDYIKYLANLRCENLGFEILYPG 305 Query: 315 YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 Y + P W+++ + K +FFE + + Y + + Sbjct: 306 YEDEPASMSWVAQYSNANMIKTDFFEAKPSAYAKSTSI 343 >gi|323452425|gb|EGB08299.1| hypothetical protein AURANDRAFT_59025 [Aureococcus anophagefferens] Length = 319 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/326 (27%), Positives = 150/326 (46%), Gaps = 27/326 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 ML S L P+++ W+ Y A + W EV + D+ W +K L D ER IK Sbjct: 1 MLAVNSLRFVLFPIEHDDIWQMYKQAEASFWTAEEVDLCHDVQHWDTK--LNDKERHFIK 58 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ + PE R + Q E +HS + +I + D Sbjct: 59 HVLAFFAASDGIVNENLAQNFATEVQWPEARCFYGFQIAIENIHSEVYSLLIDTYIRDAQ 118 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E +P + KA WAL++ D D + + + EG++ Sbjct: 119 KKHECLTAIDTMPCVAEKAQWALRWC-------------DPDHASFTERLLAFAAVEGIF 165 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F + L + M G++ + I RDE LH +F + ++++ K + Sbjct: 166 FSGSFCAVFWLKKRGLMPGLSFSNELIARDEGLHCDFACLLYSKLR-------KKLSDVQ 218 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 +++ A +E ++ +P +G+N+ S +Y++F A+R ++G L+ T NPF Sbjct: 219 VASIVGAAVDIEKSFVVSALPVELIGMNSKSMCKYIEFCADRLLLELGYSTLYGAT-NPF 277 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346 WM E+I L+ + NFFE RV EY + Sbjct: 278 DWM-ELISLQGKTNFFEKRVGEYAKA 302 >gi|257458932|ref|ZP_05624052.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter gracilis RM3268] gi|257443636|gb|EEV18759.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter gracilis RM3268] Length = 340 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/311 (28%), Positives = 147/311 (47%), Gaps = 12/311 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV DD+ + LT E+ M S +S Sbjct: 35 KYQWALKLWDLMEANTWFPKEVDTTDDVRDYNF--NLTSAEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + + Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICENTDLIYEMEKHDDMLRR 152 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ + L+ G D+ L V + EG++FY+GF I +L RA KM Sbjct: 153 KNDYISSVYEELA------GEVSDDKLLLA--MVANQILEGIYFYSGFTSIYALARAGKM 204 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 +G A+ ++I RDE HL ++IN ++ E L+ K K M A LEI + Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERADLFNKRNVDKIYEMFETAGNLEIDWGK 264 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336 +G E+Y+ ++ ++R IGLE + ++P W+ + +K NFF Sbjct: 265 YITDNQIMGFTDDIIEEYIHYLVDQRLLAIGLEKRYD-AKHPIKWVDDFSKFNDQKSNFF 323 Query: 337 ETRVTEYQQGA 347 E++VT Y +G+ Sbjct: 324 ESKVTNYSKGS 334 >gi|544843|gb|AAB29634.1| C8L product [variola virus VAR, India-1967, Peptide, 333 aa] Length = 333 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 145/315 (46%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W+ EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 28 IFPIQYHDIWNMYKKAEASFWIVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 85 GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 145 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 190 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 191 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 243 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + YM+F+A+R ++G + ++ T NP +M E I L+ Sbjct: 244 IEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIYNVT-NPSDFM-ENISLE 301 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 302 GKTNFFEKRVGEYQK 316 >gi|68304258|ref|YP_249726.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus] gi|67973087|gb|AAY84053.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus] Length = 318 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/317 (28%), Positives = 150/317 (47%), Gaps = 26/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 LLP+ W+ Y A + HW E+ M D W K L D ER +K L FFA+++ Sbjct: 9 LLPIVNEDLWQSYKKAVDCHWKVEEIDMSKDFDDWNKK--LNDKERFFLKHVLAFFAAAD 66 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V NI+ + + E + +Q F E VH+ + ++ D E + N Sbjct: 67 VIVNTNIIEHMQSAVPELEASFFYAQQTFIECVHTEMYNILVVEYIKDPQECDRILNAIE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + S+ KA WA ++ + S+ F + + F +V EG++F FA I Sbjct: 127 HIDSVKQKAAWAQKWIENQSAT------------FAERMVAFAIV-EGVFFSGSFAAIYY 173 Query: 211 LGRANK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 + + K + G+ + I RDE LH +F N+ E L + K +M EA Sbjct: 174 IKDSKKGALPGLTYSNELISRDEGLHTDFACLYYNKYIPEKNKLS----KTKVLSMFVEA 229 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +E + +P +G+N+ S +Y++F+A+R ++G + F T NPF +M+ I Sbjct: 230 VDIEKDFFTNALPVAMLGMNSQSMCEYIEFVADRLLFELGYDKHFN-TANPFEFMNN-IS 287 Query: 329 LKKEKNFFETRVTEYQQ 345 L+ + NFFE RV EY++ Sbjct: 288 LEGKTNFFEKRVGEYKR 304 >gi|317062933|ref|ZP_07927418.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium ulcerans ATCC 49185] gi|313688609|gb|EFS25444.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium ulcerans ATCC 49185] Length = 353 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/341 (27%), Positives = 172/341 (50%), Gaps = 26/341 (7%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +R++ S ++ L +KY WA + Y + N W+P ++ + D +K+ LTD E+ Sbjct: 27 RRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKIDLTQDKNDYKN---LTDQEKE 83 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 L F +S+ NNI + +++ PE L Q F+EA+HS ++QYII S+ Sbjct: 84 AYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSIQTFQEAIHSQSYQYIIESILP 142 Query: 141 DE--GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 E +++ +RE + + + A Y + L P+ D+ F + + Y++ E Sbjct: 143 KEIRNSIYDKWREDKILFERNKYIAEMYQKFLEEPN--------DKNFSKVIIADYLL-E 193 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 ++FY GF L N+M+G ++ + I RDE H+ ++ +I+ ENP + E Sbjct: 194 AIYFYNGFNFFYLLASRNRMMGTSDVIRLINRDELSHVVIFQHLLKEIRNENPDFFNDE- 252 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316 + +M +A EI + + + +G+ + EQY +++AN R IGL+P+++ + Sbjct: 253 --EIYSMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWLANERLRSIGLKPIYEGFN 310 Query: 317 ENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 +NP+ +++ D + E NFFE VT Y + + WD Sbjct: 311 KNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 351 >gi|257468678|ref|ZP_05632772.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium ulcerans ATCC 49185] Length = 348 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/341 (27%), Positives = 172/341 (50%), Gaps = 26/341 (7%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +R++ S ++ L +KY WA + Y + N W+P ++ + D +K+ LTD E+ Sbjct: 22 RRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKIDLTQDKNDYKN---LTDQEKE 78 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 L F +S+ NNI + +++ PE L Q F+EA+HS ++QYII S+ Sbjct: 79 AYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSIQTFQEAIHSQSYQYIIESILP 137 Query: 141 DE--GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 E +++ +RE + + + A Y + L P+ D+ F + + Y++ E Sbjct: 138 KEIRNSIYDKWREDKILFERNKYIAEMYQKFLEEPN--------DKNFSKVIIADYLL-E 188 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 ++FY GF L N+M+G ++ + I RDE H+ ++ +I+ ENP + E Sbjct: 189 AIYFYNGFNFFYLLASRNRMMGTSDVIRLINRDELSHVVIFQHLLKEIRNENPDFFNDE- 247 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316 + +M +A EI + + + +G+ + EQY +++AN R IGL+P+++ + Sbjct: 248 --EIYSMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWLANERLRSIGLKPIYEGFN 305 Query: 317 ENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 +NP+ +++ D + E NFFE VT Y + + WD Sbjct: 306 KNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 346 >gi|110763195|ref|XP_397443.3| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Apis mellifera] Length = 384 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 161/348 (46%), Gaps = 28/348 (8%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + N + + E + N + + +L + P+++ W+ Y A + W EV Sbjct: 44 VINTKAIQNMYLKENKFNPELEPLLKENPRRFVVFPIQWPDIWQMYKKAEASFWTVEEVD 103 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D+ W N LT E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 104 LSKDVFDW---NNLTASEKHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQ 160 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E VHS + +I + D E LFN +P + KA+WAL + S+ Sbjct: 161 VAMENVHSEMYSLLIDTYIADAKERDFLFNAIENLPCVAKKAHWALNWINHESAT----- 215 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 + V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 216 --------FPERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 267 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + I ++ P ++ +++ +A +E + + +P +G+N QY++ Sbjct: 268 ACLMFKHI-VQKPSC------ERVTSIIKDAVKIEQEFLTDALPVEMIGMNCKLMCQYIE 320 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 F+A+R ++G + ++ +ENPF +M E I L+ + NFFE +V EYQ+ Sbjct: 321 FVADRLLVELGCKKIY-MSENPFDFM-EHISLEGKTNFFEKKVGEYQK 366 >gi|17974949|ref|NP_536463.1| C10L [Monkeypox virus Zaire-96-I-16] gi|17529816|gb|AAL40494.1|AF380138_36 C10L [Monkeypox virus Zaire-96-I-16] gi|51342196|gb|AAU01240.1| MPXV-WRAIR030 [Monkeypox virus] gi|58220500|gb|AAW67788.1| MPXV-SL-030 [Monkeypox virus] gi|59858836|gb|AAX09131.1| MPXV-COP-030 [Monkeypox virus] gi|68448710|gb|AAY96833.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68448912|gb|AAY97034.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68449113|gb|AAY97234.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68449313|gb|AAY97433.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68449512|gb|AAY97631.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|300872658|gb|ADK39060.1| ribonucleotide reductase small subunit [Monkeypox virus] Length = 319 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 143/315 (45%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R ++ A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRFIITNAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|257453171|ref|ZP_05618470.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp. 3_1_5R] gi|317059706|ref|ZP_07924191.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 3_1_5R] gi|313685382|gb|EFS22217.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 3_1_5R] Length = 344 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 96/341 (28%), Positives = 166/341 (48%), Gaps = 24/341 (7%) Query: 21 DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++R++ S ++ L +K+ WA + Y + N W+P +V + D +++ LT ER Sbjct: 17 ERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPER 73 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 L F +S+ NN V I +++ PE L Q F+EA+HS ++QYII S+ Sbjct: 74 EAYDGILSFLIFLDSIQTNN-VPNISDYVTAPEVNLLLSIQTFQEAIHSQSYQYIIESIL 132 Query: 140 LDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 E +++ +R+ + + + Q Q + +D+ F + L Y++ E Sbjct: 133 PKESRDLIYDKWRDDKILFERNRFIAQIYQDFIEET-------SDRNFAKVLVANYLL-E 184 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 ++FY GF L NKMVG ++ + I RDE H+ +I +IK ENP+ + +E Sbjct: 185 SLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKIIREIKAENPNFFQEE- 243 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316 + R M A EI + + +G+ + E Y +++AN R IGL P++ +T Sbjct: 244 --EIRMMFQTAVEQEILWTEHIIGNRVLGITTETTEAYTKWLANERLRTIGLAPMYDGFT 301 Query: 317 ENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 +NP+ + D + + NFFE VT Y + + WD Sbjct: 302 KNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342 >gi|310831442|ref|YP_003970085.1| putative ribonucleoside-diphosphate reductase small subunit [Cafeteria roenbergensis virus BV-PW1] gi|309386626|gb|ADO67486.1| putative ribonucleoside-diphosphate reductase small subunit [Cafeteria roenbergensis virus BV-PW1] Length = 326 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/333 (28%), Positives = 158/333 (47%), Gaps = 30/333 (9%) Query: 18 NVD-DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 N+D ++ +L + + + P+KY W+ Y W E+ D +K L Sbjct: 3 NLDMNEELLKSENSRYTVFPIKYHKIWDLYKKMEAAFWTAEEIDWSKDKHDFKK---LNQ 59 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ IK L FF++S+++V N+ + + E + Q E +HS + I Sbjct: 60 DEQRFIKYVLAFFSASDTIVNINLGERLSHEVQPLEAKIAYTFQMMMEGIHSEVYALQID 119 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ D E + N VP I AK +W L++ + S SF T V Sbjct: 120 NIIEDVQERKDILNSIETVPCIKAKTDWMLKWVK--SEESFATR------------MVAQ 165 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 V+ EG++F F I L N M G+ + I RDE +H ++ I + + ++ Sbjct: 166 VISEGLFFSGSFCAIFWLKNKNIMPGLISSNELIARDEGMHCDYSIMLYHMLQ------- 218 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 K Q+K + M +A E + E++P +G+NA EQY++F+A++ ++G +F Sbjct: 219 NKLSQEKIQQMFKDAVETERIFICESLPCSLLGMNADLMEQYIKFVADQLIIKLGYNKIF 278 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 K +NPF WM E I ++ + NFFE R T+YQ+ Sbjct: 279 K-VDNPFTWM-EAISIEGKTNFFEHRPTQYQRA 309 >gi|283768723|ref|ZP_06341634.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia extructa W1219] gi|283104509|gb|EFC05882.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia extructa W1219] Length = 348 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 96/357 (26%), Positives = 171/357 (47%), Gaps = 15/357 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M+ P+ E ++V +R+LN +++N +KY W Y A NN W+P E+ Sbjct: 1 MSKGIQRKPLFNPEGDIDVCHRRLLNFDTTNINDFNNMKYTWVSNWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D + + + L+ ER + L F +SL + N+ I +++ E L Sbjct: 61 NLNQDKSDYLN---LSLAERSAYDKILSFLVYLDSLQSANLP-NIASYVTANEVNLCLSI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 Q F+E +HS ++ Y++ S+ E +Y+ K + L T + + Sbjct: 117 QTFQECIHSQSYSYMLDSICSPEQRNEILYQ------WKYDEHLLKRNTFIGHLYNEFLE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D++ + + + EG++FY+GF +L R KM G ++ +YI RDE+ HL Sbjct: 171 YQDKQSFLKVCIANFILEGIYFYSGFMFFYNLARHGKMPGSVQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +++ +++ E P L+T Q + M+HE EIA+ + GLN+ E Y++++ Sbjct: 231 NILLELQKEEPELFTDSNIQMIKDMIHEGVQQEIAWGQYVIGNNIPGLNSQMVEDYIKYL 290 Query: 300 ANRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 N R +GL L++ Y E P W+ + D K +FFE RVT Y + + ++ D Sbjct: 291 GNTRFATLGLGNLYEGYEEEPETMRWVKQYSDANMVKTDFFEARVTAYAKSSAIEDD 347 >gi|304321610|ref|YP_003855253.1| ribonucleoside-diphosphate reductase subunit beta [Parvularcula bermudensis HTCC2503] gi|303300512|gb|ADM10111.1| ribonucleoside-diphosphate reductase, beta subunit [Parvularcula bermudensis HTCC2503] Length = 340 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/314 (28%), Positives = 151/314 (48%), Gaps = 19/314 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D W +K LTD ER ++ + FF S+ Sbjct: 20 PFRYPWAYDYWKKQQQVHWMPEEVPLGEDCKDWANK--LTDKERNLLTQIFRFFTQSDVE 77 Query: 96 VANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + Y L P E R L + E +H + ++ ++G+ E E F+ + + + Sbjct: 78 VGAN-YMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPEVE-FSAFMDYEA 135 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + AK ++ ++ G ++ +++ L + VF EG+ + FA +++ R Sbjct: 136 MAAKHDYLGRF-----------GVEN-ERDILTSMAVFGGFTEGLQLFASFAMLMNFPRF 183 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDESLH + + ++ E L T LE Sbjct: 184 NKMKGMGQIVTWSIRDESLHCEGMVRLFHEFARETGAL-TPAVADDIVDCCKTVVDLEDK 242 Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V G+ + Y++ IA+ R Q+GL P+F +P PW+ E+++ + Sbjct: 243 FIELAFEAGEVEGMTPDDIKAYIRHIADWRLSQLGLPPVFAADNHPLPWLREILNGVEHA 302 Query: 334 NFFETRVTEYQQGA 347 NFFE R TEY +GA Sbjct: 303 NFFEARATEYSKGA 316 >gi|297209|emb|CAA48969.1| C8L [Variola virus] gi|745144|prf||2015436AF C8L gene Length = 333 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 28 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 85 GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 144 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 145 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 190 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 191 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 243 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + YM+F+A+R ++G + ++ T NP +M E I L+ Sbjct: 244 IEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIYNVT-NPSDFM-ENISLE 301 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 302 GKTNFFEKRVGEYQK 316 >gi|257467364|ref|ZP_05631675.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium gonidiaformans ATCC 25563] gi|315918494|ref|ZP_07914734.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium gonidiaformans ATCC 25563] gi|313692369|gb|EFS29204.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium gonidiaformans ATCC 25563] Length = 344 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 96/341 (28%), Positives = 166/341 (48%), Gaps = 24/341 (7%) Query: 21 DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++R++ S ++ L +K+ WA + Y + N W+P +V + D +++ LT ER Sbjct: 17 ERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPER 73 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 L F +S+ NN V I +++ PE L Q F+EA+HS ++QYII S+ Sbjct: 74 EAYDGILSFLIFLDSIQTNN-VPNISDYVTAPEVNLLLSIQTFQEAIHSQSYQYIIESIL 132 Query: 140 LDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 E +++ +R+ + + + Q Q + +D+ F + L Y++ E Sbjct: 133 PKESRDLIYDKWRDDKILFERNRFIAQIYQDFIEEA-------SDKNFAKVLVANYLL-E 184 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 ++FY GF L NKMVG ++ + I RDE H+ +I +IK ENP+ + +E Sbjct: 185 SLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKIIREIKAENPNFFQEE- 243 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316 + R M A EI + + +G+ + E Y +++AN R IGL P++ +T Sbjct: 244 --EIRMMFQTAVEQEILWTEHIIGNRVLGITTETTEAYTKWLANERLRTIGLAPMYDGFT 301 Query: 317 ENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 +NP+ + D + + NFFE VT Y + + WD Sbjct: 302 KNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342 >gi|306478720|ref|NP_042072.2| Ribonucleoside-diphosphate reductase small chain [Variola virus] gi|464615|sp|P33799|RIR2_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 319 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R+++ +A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVRSIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + YM+F+A+R ++G + ++ T NP +M E I L+ Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIYNVT-NPSDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|67585619|ref|XP_665115.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis TU502] gi|54655552|gb|EAL34885.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis] Length = 296 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/305 (28%), Positives = 144/305 (47%), Gaps = 29/305 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W+ E+ + D W+S L D ER IK L FFA+S+ +V N+ + Sbjct: 2 YKKAEASFWVTEEIDLSQDTRDWES---LKDPERHFIKYVLAFFAASDGIVMENLAVNFL 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 R + PE R Y Q E +HS T+ +I D E LF + ++ KA WA Sbjct: 59 REIQIPEARMYYAFQMSIEQIHSETYSLLIDRYITDIKERQMLFEAISHIEAVKKKAEWA 118 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 ++ ++++ F + + F V EG+ F F I L + M G+ Sbjct: 119 TKWM-------------NSERSFAERIIGFCAV-EGILFSGSFCAIFWLKKRGLMPGLTF 164 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I RDE LH +F + +K + P + + ++ EA +E + +++P Sbjct: 165 SNELISRDEGLHADFACLIYKALKFKLP-------APRVQQIISEAVEVERNFLCDSLPV 217 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 +G+N+ QY++F+A+R + + ++ + NPF WM ++I L+ + NFFE RV E Sbjct: 218 DLIGMNSRLMAQYIEFVADRLLFALDIPKIYNVS-NPFDWM-DLISLQGKTNFFEKRVGE 275 Query: 343 YQQGA 347 YQ Sbjct: 276 YQMAG 280 >gi|332185556|ref|ZP_08387304.1| ribonucleotide reductase, small chain family protein [Sphingomonas sp. S17] gi|332014534|gb|EGI56591.1| ribonucleotide reductase, small chain family protein [Sphingomonas sp. S17] Length = 351 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/317 (27%), Positives = 149/317 (47%), Gaps = 17/317 (5%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 Q P +Y WA+E + HW+P EVP+ +D W K LTD ER ++ + FF Sbjct: 8 KQYKPFEYPWAFEFWKRQQQLHWLPEEVPLGEDCRDWAQK--LTDHERNLLTQIFRFFTQ 65 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 ++ V + R E + L + E VH + +++ ++G+ E E + + E Sbjct: 66 ADVEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGAFLE 124 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + K + Y Q D D++ + L +F EG+ + FA +++ Sbjct: 125 YAEMKDKHD----YLQKFGV--------DNDEDIARTLAMFGGFTEGVQLFASFAMLMNF 172 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 R NKM G+ + + +RDESLH I + + E L TK + L Sbjct: 173 PRFNKMKGMGQIVTWSVRDESLHCEGIIQLFHAFTKERQCL-TKAVKDDIADQCQTTVRL 231 Query: 272 EIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E + G V G+ A ++Y+++IA+ R Q+GL+P++ E+P PW++ +++ Sbjct: 232 EDNFIDLAFEMGPVNGMTAKDIKKYIRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGV 291 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFETR TEY + A Sbjct: 292 EHANFFETRATEYSKAA 308 >gi|313768143|ref|YP_004061574.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1] gi|312599750|gb|ADQ91771.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1] Length = 387 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/318 (27%), Positives = 148/318 (46%), Gaps = 29/318 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++ W Y A ++W E+ D+ W N L+D+E+ IK L FFA S+ Sbjct: 85 VFPIEHENLWTLYKKAQMSNWTAEEIDFSKDMDDW---NELSDNEKHFIKYILAFFAGSD 141 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V NI + E R + Q+ E VH T+ +I + E LF + Sbjct: 142 GIVFENINNNFADEIQLTEARSFYAYQSHNEMVHGETYSKLIDKYIKNSSEKKQLFEAIQ 201 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P I KA WA+++ D + F + L F V EG++F F I Sbjct: 202 TIPCIERKAKWAMKWF-------------DKKRPFAERLLAFACV-EGIFFSGSFCAIFW 247 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + + G+ + I RDE +H F +++ N +K K Q ++ +A Sbjct: 248 LKKRGLLPGLCFSNELISRDEGMHQEFAVELFNMLK-------NKPSQNTIEEIIRDAVS 300 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+N+ +Y++++A+R Q+G ++ T+NPF +M E I L Sbjct: 301 IEKEFITDALPCSLIGMNSGKMSEYIEYVADRLSKQVGHNKIWN-TKNPFDFM-ENISLD 358 Query: 331 KEKNFFETRVTEYQQGAE 348 + NFFE RV +Y + E Sbjct: 359 GKTNFFEKRVGDYGKMDE 376 >gi|295401051|ref|ZP_06811025.1| Ribonucleoside-diphosphate reductase [Geobacillus thermoglucosidasius C56-YS93] gi|312112173|ref|YP_003990489.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1] gi|294976844|gb|EFG52448.1| Ribonucleoside-diphosphate reductase [Geobacillus thermoglucosidasius C56-YS93] gi|311217274|gb|ADP75878.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1] Length = 346 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/343 (26%), Positives = 164/343 (47%), Gaps = 25/343 (7%) Query: 15 KRVNVD------DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 KRV +D R++N +S +V + Y WA+ KY N W P E+ M D+ Sbjct: 7 KRVIMDPEAPNRSTRIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDV-- 64 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K LT+ E+ + +G A +S + + + ++++ ++ A +E +H Sbjct: 65 -KQFPLLTEREQDAFLKIIGLLALLDS-IQTDYAGRVADYITDSSINALMIMLAQQEVIH 122 Query: 128 SHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H++ Y+++SL + E+F +R P + + ++ + + ++ + E Sbjct: 123 NHSYSYVLSSLVTKSKQDEVFEFWRNEPILRKRNDFV--------TNGYKAFAENPNVEN 174 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L V+ V+ EG++FY+GFA +L R KMV + YI RDE +H++ + ++ Sbjct: 175 LLKSIVYDVILEGLFFYSGFAFFYNLARNQKMVATSTMINYINRDEHIHVDLFAKIFKEV 234 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 E P T E + + +A LEI +A+ + G++ Y++F AN R H Sbjct: 235 LSEYPEYNTPELAEFVQATFTKAAELEIEWANYIIGNDIDGIDMHDLSAYIKFYANVRAH 294 Query: 306 QIGLE-PLFKYTENPFPWMS--EVIDLKKEKNFFETRVTEYQQ 345 Q+G E P Y NP W+ E +DL K +FFE + +Y + Sbjct: 295 QLGFERPFAGYRTNPLRWIKAYEEVDLGK-SDFFEQKSRQYTK 336 >gi|315497476|ref|YP_004086280.1| ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB 48] gi|315415488|gb|ADU12129.1| Ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB 48] Length = 350 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/313 (27%), Positives = 145/313 (46%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HW+P EVP+ +D+ W SK L D+ER ++ + FF S+ Sbjct: 23 PFRYPWAFDFWQKQQQVHWLPEEVPLGEDVKDWASK--LNDNERNLLTQIFRFFTQSDIE 80 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L A E VH + ++ ++G+ E E F + E ++ Sbjct: 81 VQDNYMEKYGRVFKPTEIKMMLSAFANMETVHIAAYALLLETIGMPEAE-FGAFMEYEAM 139 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K N+ ++ D D + + L +F EG+ + FA +++ R N Sbjct: 140 RDKHNFMQKFGV------------DTDADICRTLAMFGGFTEGLQLFASFAMLMNFPRFN 187 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH I + + E + TK LE + Sbjct: 188 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETGAV-TKAVADDIVDCCKTVVSLEDKF 246 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 + G V G+ +QY+++IA+ R Q+ L +F ENP PW+ ++ + N Sbjct: 247 IDLSFEMGPVEGMTPDDIKQYIRYIADWRLRQLELPEVFGVQENPLPWLQVLLSGVEHAN 306 Query: 335 FFETRVTEYQQGA 347 FFE R TEY + A Sbjct: 307 FFEARATEYSKAA 319 >gi|294013210|ref|YP_003546670.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium japonicum UT26S] gi|292676540|dbj|BAI98058.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium japonicum UT26S] Length = 351 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/313 (25%), Positives = 151/313 (48%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HW+P EVP+ +D W K L+D ER ++ + FF ++ Sbjct: 12 PFEYPWAYEFWKRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + R E + L + E VH + +++ ++G+ E E ++ + + + Sbjct: 70 VQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQYKEM 128 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K ++ Q+ D D++ + L +F EG+ + FA +++ R N Sbjct: 129 KDKHDYLQQFGV------------DTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFPRFN 176 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDE+LH GI + ++ T + M + +E A+ Sbjct: 177 KMKGMGQIVSWSVRDETLHCE-GIVRLFHAFVKERDCLTASVKDDIMDMCQKTVRIEDAF 235 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G V G+ ++Y+++IA+ R Q+GL+P++ E+P PW++ +++ + N Sbjct: 236 VDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVEHAN 295 Query: 335 FFETRVTEYQQGA 347 FFETR TEY + A Sbjct: 296 FFETRATEYSKAA 308 >gi|165969130|ref|YP_001651030.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV] gi|164663626|gb|ABY65846.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV] Length = 339 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 94/324 (29%), Positives = 156/324 (48%), Gaps = 20/324 (6%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP+++ W Y +A + W EV + D W +K L + ER IK L FFAS++ Sbjct: 10 ILPIQHEKLWRAYKTALDCMWKVEEVDLSRDYEDWCTK--LNERERFFIKHILAFFASAD 67 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR 150 S+V N++ + + E R + +Q E VHS + +I +E EL N + Sbjct: 68 SIVNINLIDYVRDAVGELEARYFYDQQILIENVHSEMYSLLIFEYIKNEKEQNELLNAFE 127 Query: 151 EVPSITAKANWALQYTQT------LSSP---SFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 +V + KA WAL++T++ L +P + T + L V + + EG++F Sbjct: 128 DVKCVRKKAQWALKWTESSWWRDWLVNPLVKLWRTWRDGSSASKLARRMVAFAIVEGVFF 187 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 FA I + M G+ + I RDE LH NF N+ E + + E Sbjct: 188 SGSFAAIFFIKTKGIMPGLTFSNELISRDEGLHTNFACLYYNEYIDERDKMSSAEILD-- 245 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 M EA +E + +P +G+N+ + +Y++F+A+R ++ +P T NPF Sbjct: 246 --MFVEAVNIEKEFFTSALPCDLLGMNSRAMCEYIEFVADRLLTELQ-QPKHFNTPNPFN 302 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQ 345 +M+ I L+ + NFFE RV EY++ Sbjct: 303 FMNN-ISLEGKTNFFERRVGEYKR 325 >gi|307295356|ref|ZP_07575195.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum L-1] gi|306878859|gb|EFN10078.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum L-1] Length = 351 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/313 (25%), Positives = 151/313 (48%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HW+P EVP+ +D W K L+D ER ++ + FF ++ Sbjct: 12 PFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + R E + L + E VH + +++ ++G+ E E ++ + + + Sbjct: 70 VQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFMQYKEM 128 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K ++ Q+ D D++ + L +F EG+ + FA +++ R N Sbjct: 129 KDKHDYLAQFGV------------DTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFPRFN 176 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDE+LH GI + ++ T + M + +E A+ Sbjct: 177 KMKGMGQIVSWSVRDETLHCE-GIIRLFHAFVKERDCLTASVKDDIMDMCQKTVRIEDAF 235 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G V G+ ++Y+++IA+ R Q+GL+P++ E+P PW++ +++ + N Sbjct: 236 IDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVEHAN 295 Query: 335 FFETRVTEYQQGA 347 FFETR TEY + A Sbjct: 296 FFETRATEYSKAA 308 >gi|253582918|ref|ZP_04860136.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium varium ATCC 27725] gi|251835124|gb|EES63667.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium varium ATCC 27725] Length = 348 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 94/341 (27%), Positives = 171/341 (50%), Gaps = 26/341 (7%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +R++ S ++ L +KY WA + Y + N W+P ++ + D +K+ LTD E+ Sbjct: 22 RRIIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKIDLTQDKNDYKN---LTDQEKE 78 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 L F +S+ NNI + +++ PE L Q F+EA+HS ++QYII S+ Sbjct: 79 AYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSIQTFQEAIHSQSYQYIIESILP 137 Query: 141 DE--GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 E +++ +RE + + + A Y + L +P+ D+ F + + Y++ E Sbjct: 138 KEIRNSIYDKWREDKILFERNKYIAEMYQRFLENPN--------DENFSKVIVADYLL-E 188 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 ++FY GF L N+M+G ++ + I RDE H+ ++ +I+ ENP + E Sbjct: 189 AIYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVIFQHLLKEIRNENPDFFNDE- 247 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316 + M +A EI + + + +G+ + EQY +++AN R IGL+P++ + Sbjct: 248 --EIYDMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWLANERLRSIGLKPIYDGFN 305 Query: 317 ENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 +NP+ +++ D + E NFFE VT Y + + WD Sbjct: 306 KNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 346 >gi|94495782|ref|ZP_01302361.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58] gi|94424474|gb|EAT09496.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58] Length = 350 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/313 (25%), Positives = 151/313 (48%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HW+P EVP+ +D W K L+D ER ++ + FF ++ Sbjct: 12 PFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + R E + L + E VH + +++ ++G+ E E ++ + + + Sbjct: 70 VQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQYKEM 128 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K ++ Q+ D D++ + L +F EG+ + FA +++ R N Sbjct: 129 KDKHDYLQQFGV------------DTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFPRFN 176 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDE+LH GI + ++ T + M + +E A+ Sbjct: 177 KMKGMGQIVSWSVRDETLHCE-GIVRLFHAFVKERDCLTASVKDDIMDMCQKTVRIEDAF 235 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G V G+ ++Y+++IA+ R Q+GL+P++ E+P PW++ +++ + N Sbjct: 236 VDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVEHAN 295 Query: 335 FFETRVTEYQQGA 347 FFETR TEY + A Sbjct: 296 FFETRSTEYSKAA 308 >gi|149182583|ref|ZP_01861054.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. SG-1] gi|148849719|gb|EDL63898.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. SG-1] Length = 345 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/317 (26%), Positives = 154/317 (48%), Gaps = 18/317 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +++ WA+ KY N W P E+ M D+ K LT+ E+ + +G A +S + Sbjct: 35 VRFSWAYPKYKRMLGNFWTPFEINMSKDI---KQFPNLTEQEQDTFLKVIGLLALLDS-I 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154 + + +L++ ++ A +E VH+H++ Y+++S+ + E+F+ +R P+ Sbjct: 91 QTDYAGKVADYLTDSSLNALMIILAQQEVVHNHSYSYVLSSIVSKNKQDEVFDYWRTEPT 150 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + ++ Q + ++ + E L V+ V+ EG++FY+GFA +L R Sbjct: 151 LRKRNDFITNGYQGFA--------ENPNIENLLHSIVYDVILEGLFFYSGFAFFYNLARN 202 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KMV + YI RDE LH+ + ++ ENP T E + A LEI Sbjct: 203 QKMVATSTMINYINRDEQLHVGLFEKIYKEVLHENPEYDTAELKVFGTQAFKRAAELEIE 262 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMS--EVIDLKK 331 + + + GL E Y++F+AN+R Q+G + P Y NP W+ + +DL K Sbjct: 263 WGEQIIGNKIDGLLMSDLEAYIKFMANKRAEQMGFQAPFEGYRTNPLRWIVAYQEVDLGK 322 Query: 332 EKNFFETRVTEYQQGAE 348 +FFE + +Y + ++ Sbjct: 323 -TDFFEQKSRQYTKTSD 338 >gi|322795965|gb|EFZ18591.1| hypothetical protein SINV_11129 [Solenopsis invicta] Length = 426 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 149/316 (47%), Gaps = 28/316 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKNGLTDDERLMIKRNLGFFASS 92 + P++Y WE Y A + W EVP+ D W K L DE+ I L FFA+S Sbjct: 112 IFPIQYPDIWEMYKKAVASFWTIEEVPLHKLDKKDWDEK--LNSDEKYFISHVLAFFAAS 169 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149 + +V N++ + + E R + Q E +HS + +I + D E LFN Sbjct: 170 DGIVNENLIERFSQEVKIAEARCFYGFQIAIENIHSEMYSLLIETYISDPKEKDFLFNAI 229 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 +P + KA WAL + S+ F + + F V EG++F FA I Sbjct: 230 ETLPCVGKKAKWALNWINHESAT------------FPERVIAFAAV-EGIFFSGSFAAIF 276 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 L + M G+ + I RDE LH +F + I I+ P + ++++ +A Sbjct: 277 WLKKRGVMPGLTFSNELISRDEGLHCDFACLIFKHI-IQKPSF------EHVKSIIMDAV 329 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E + + +P +G+N Y++F+A+R +G E ++ +ENPF +M+ I L Sbjct: 330 EIEKEFLTQALPVELIGMNCSLMCNYIEFVADRLFVALGFEKVYN-SENPFSFMN-FISL 387 Query: 330 KKEKNFFETRVTEYQQ 345 + + NFFE +V EY++ Sbjct: 388 EGKTNFFEKKVGEYKK 403 >gi|257792030|ref|YP_003182636.1| ribonucleotide-diphosphate reductase subunit beta [Eggerthella lenta DSM 2243] gi|317488666|ref|ZP_07947206.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA] gi|257475927|gb|ACV56247.1| Ribonucleoside-diphosphate reductase [Eggerthella lenta DSM 2243] gi|316912225|gb|EFV33794.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA] Length = 347 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 96/340 (28%), Positives = 166/340 (48%), Gaps = 19/340 (5%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V D+RM+ + ++N +KY W + Y A NN W+P E+ + D+ K L Sbjct: 16 TDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDI---KDYRKLP 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER + L F +SL + N+ A+ +++ E L Q F+E VHS ++ Y++ Sbjct: 73 AAERRAYDKILSFLIFLDSLQSANLP-AVGEYITANEVNLCLAIQTFQETVHSQSYSYML 131 Query: 136 TSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ + ++ ++E + A+ ++ L + D E L + V Sbjct: 132 DTICEPQERNDVLYQWKEDEHLLARN----EFIGNL----YNQFQDDKSPEALARVLVAN 183 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY+GF +LGR N M G ++ +YI RDE+ HL +++ ++K E P L+ Sbjct: 184 YILEGVYFYSGFMFFYNLGRNNLMPGSVQEIRYINRDENTHLWLFRNILLELKEEEPELF 243 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E ++ R M+ E EI + H + GLN Y+Q++ N RC Q+G EPL+ Sbjct: 244 APELVEEYRAMIKEGCEQEIRWGHYAIGDDVAGLNKQMVTDYIQYLGNLRCAQLGFEPLY 303 Query: 314 KYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 + E W+S+ + K +FFE R T Y + + L Sbjct: 304 EGHEREPESMSWVSQFSNANMIKTDFFEARSTAYAKSSAL 343 >gi|85375147|ref|YP_459209.1| ribonucleotide-diphosphate reductase subunit beta [Erythrobacter litoralis HTCC2594] gi|84788230|gb|ABC64412.1| ribonucleotide reductase beta subunit [Erythrobacter litoralis HTCC2594] Length = 356 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/315 (26%), Positives = 154/315 (48%), Gaps = 21/315 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D W K +T+ ER ++ + FF ++ Sbjct: 12 PFEYPWAYDFWKRQQQIHWMPEEVPLGEDCRDWAQK--ITEHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + R E + L + E VH + +++ ++G+ E E ++ + E + Sbjct: 70 VQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFLEYEEM 128 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K + Y Q D D++ + L VF EGM + FA +++ R N Sbjct: 129 KDKHD----YLQLFGV--------DTDEDIARTLAVFGGFTEGMQLFASFAMLMNFPRFN 176 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE--- 272 KM G+ + + +RDESLH + + ++ + +TK ++ + ++ LE Sbjct: 177 KMKGMGQIVSWSVRDESLHCEGIVRLFHEF-VRERDCYTKAVKEDIIDICQKSVRLEDNF 235 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 I A E P G+ ++Y+++IA+ R Q+GL+P++ ++P PW++ +++ + Sbjct: 236 IDLAFEMGP--VSGMTPKEIKKYIRYIADWRLGQLGLQPIYMVDDHPLPWLAPLLNGVEH 293 Query: 333 KNFFETRVTEYQQGA 347 NFFE R TEY +GA Sbjct: 294 ANFFEQRATEYSKGA 308 >gi|325475472|gb|EGC78653.1| ribonucleoside-diphosphate reductase [Treponema denticola F0402] Length = 351 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 89/335 (26%), Positives = 165/335 (49%), Gaps = 19/335 (5%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++M+ + ++N +KY WA + Y A NN W+P E+ M D+ ++ L+ E+ Sbjct: 25 RKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQDYRK---LSGPEKT 81 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +S+ N+ + ++++ E L QAF+EAVHS ++ Y++ ++ Sbjct: 82 AYDKILSFLIFLDSIQTANLP-NVGQYVTANEVNLCLTIQAFQEAVHSQSYSYMLDTICS 140 Query: 141 DE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E+ +++ + + + S FL+ Y++ EG Sbjct: 141 PEERTEILYQWKDDEHLLRRNKFIGDLYNEFQSDKSALA-------FLKVCVANYIL-EG 192 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++FY+GF +LGR NKM G ++ +YI RDE+ HL +I +++ E P L+T + Sbjct: 193 IYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSMIQELQKEEPQLFTPQNV 252 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317 + R M+ E EIA+ + + GLN+ Y+Q++ N RC +G P++ + E Sbjct: 253 ELFRGMIREGCEQEIAWGNYVIGNDIPGLNSQMITDYIQYLGNLRCENLGFAPIYDGHKE 312 Query: 318 NP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 P W+S+ + K +FFE + T Y + + + Sbjct: 313 EPQSMSWVSQYSNANLIKTDFFEAKSTAYAKSSAM 347 >gi|268678691|ref|YP_003303122.1| ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum DSM 6946] gi|268616722|gb|ACZ11087.1| Ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum DSM 6946] Length = 340 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 86/311 (27%), Positives = 145/311 (46%), Gaps = 12/311 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D+ + +KN LTD E+ M S +S Sbjct: 35 KYTWALKLWDMMEGNTWFPKEVDTTKDVIDY-NKN-LTDAEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + + Sbjct: 93 NNLADNINPYITAPEINACLSRQAYEEANHSKSYAVMVEAMCDNTDLIYEMEKHDEVLRR 152 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ + L+ D +E L + EG++FY+GF I +L R +M Sbjct: 153 KNDYISSVYEELAG--------DVTEEKLVLAMFANQILEGIYFYSGFTAIYALARTGRM 204 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 +G A+ ++I RDE HL ++IN K E P L+T + K M +A LEI + Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINTTKKERPDLFTDALKAKVYEMFQKAGDLEIEWGK 264 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFF 336 +G E Y+ ++ + R +G + L+ +P W+ + +K NFF Sbjct: 265 YITQNQIMGFTDDIIETYIHYLVDDRLTAVGFDKLYN-ASHPIKWVDDFSKFNDQKTNFF 323 Query: 337 ETRVTEYQQGA 347 E V+ Y +G+ Sbjct: 324 EGNVSNYSKGS 334 >gi|148912897|ref|YP_001293211.1| hypothetical protein GTPV_gp017 [Goatpox virus Pellor] Length = 321 Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 146/315 (46%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DLA WK L ++E+ IK L FFA+S+ Sbjct: 14 VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LNNEEQYFIKNILAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII---TSLGLDEGELFNMYR 150 +V N+ Y + E R + Q E +HS + +I S ++ LFN Sbjct: 71 GIVNENLAERFYSEVQWSEARCFYGFQIAIENIHSEMYSLLIDTYISSTKEKEHLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + I K+ WA ++ + F + L F V EG++F FA I Sbjct: 131 TMDFIKKKSEWARKWIS------------NKKASFGERLIAFAAV-EGIFFSGSFAAIFW 177 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + +K + + +++EA Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKYPPSN-------DIIKIIINEAVS 230 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N QY++FIA+R ++G + +F T NPF +M E I L+ Sbjct: 231 IEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVFMST-NPFDFM-ENISLE 288 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV+EYQ+ Sbjct: 289 GKTNFFEKRVSEYQK 303 >gi|295103295|emb|CBL00839.1| Ribonucleotide reductase, beta subunit [Faecalibacterium prausnitzii SL3/3] Length = 347 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 95/348 (27%), Positives = 160/348 (45%), Gaps = 19/348 (5%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDV-- 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L ER + L F +S+ N+ I +++ E L QAF+E VH Sbjct: 66 -KDYPRLLSTERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECVH 123 Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 S ++ Y++ ++ ++ ++ + K + L T + + D Sbjct: 124 SQSYSYMLDTICSPVERNDILYQW--------KTDEHLLRRNTFIGDCYNEFQERKDAPT 175 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L + + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++ Sbjct: 176 LLRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITEL 235 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 + E P L+T E Q R M+ E EIA+ H + GLN Y++++ N R Sbjct: 236 QKEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWT 295 Query: 306 QIG---LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 +G L P F+ W+S+ D K +FFE R T Y + L Sbjct: 296 SLGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTAL 343 >gi|313115920|ref|ZP_07801347.1| ribonucleoside-diphosphate reductase, beta subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310621684|gb|EFQ05212.1| ribonucleoside-diphosphate reductase, beta subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 347 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 95/348 (27%), Positives = 160/348 (45%), Gaps = 19/348 (5%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDV-- 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L ER + L F +S+ N+ I +++ E L QAF+E VH Sbjct: 66 -KDYPRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECVH 123 Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 S ++ Y++ ++ ++ ++ + K + L T + + D Sbjct: 124 SQSYSYMLDTICSPVERNDILYQW--------KTDEHLLRRNTFIGDCYNEFQERKDAPT 175 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L + + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++ Sbjct: 176 LLRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITEL 235 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 + E P L+T E Q R M+ E EIA+ H + GLN Y++++ N R Sbjct: 236 QKEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWT 295 Query: 306 QIG---LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 +G L P F+ W+S+ D K +FFE R T Y + L Sbjct: 296 SLGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTAL 343 >gi|71033209|ref|XP_766246.1| ribonucleotide-diphosphate reductase small subunit [Theileria parva strain Muguga] gi|68353203|gb|EAN33963.1| ribonucleotide-diphosphate reductase small subunit, putative [Theileria parva] Length = 308 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 38/313 (12%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+ Y WE Y A + W E+ D W + L DER I Sbjct: 10 LLNRNPNRTSLFPIVYPEFWEWYKKAQASFWTAEEIDFSMDYNHW---HRLNKDERHFIT 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ L R + PE + + Q E +HS T+ +I + DE Sbjct: 67 NVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVKDEA 126 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF + ++ KANWA ++ D+ + V Y EG+ Sbjct: 127 EKRRLFMAIETIDAVKDKANWAKKWI--------------TDENSFAERIVAYAAVEGIL 172 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F + L + M G+ + I RDE LH +FG + + +K + P ++ Sbjct: 173 FSGSFCALFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYHNLKHKLP-------EEA 225 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNA-----PSC-----EQYMQFIANRRCHQIGLE 310 + ++ EA ++E +Y +++P +G+N+ C QY++F+A+R +G+ Sbjct: 226 VQQIIKEAVVVERSYICDSLPCDLIGMNSRKKILTHCLIELMTQYIEFVADRLLQALGVR 285 Query: 311 PLFKYTENPFPWM 323 P++ T NPF WM Sbjct: 286 PVYNVT-NPFDWM 297 >gi|76630263|ref|XP_880783.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 3 [Bos taurus] gi|297480612|ref|XP_002691528.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 2 [Bos taurus] gi|296482362|gb|DAA24477.1| ribonucleotide reductase M2 polypeptide isoform 2 [Bos taurus] Length = 341 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 88/294 (29%), Positives = 144/294 (48%), Gaps = 29/294 (9%) Query: 56 PTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 P+E V + D+ W++ L +ER I L FFA+S+ +V N+V + + E R Sbjct: 55 PSEPVDLSKDIQHWEA---LKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 111 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 + Q E +HS + +I + D E LFN +P + KA+WAL++ + Sbjct: 112 CFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRW---IGD 168 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + T G + V + EG++F FA I L + M G+ + I RDE Sbjct: 169 KAATYGER----------VVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 218 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 LH +F + HL K +Q+ + ++ A +E + E +P +G+N Sbjct: 219 GLHCDFACLMFK-------HLLHKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTL 271 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 272 MKQYIEFVADRLMLELGFSKVFR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 323 >gi|237738278|ref|ZP_04568759.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium mortiferum ATCC 9817] gi|229420158|gb|EEO35205.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium mortiferum ATCC 9817] Length = 348 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 93/344 (27%), Positives = 172/344 (50%), Gaps = 26/344 (7%) Query: 19 VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +++++++ S ++ L +KYGWA Y + N W+P ++ + D + N LT+ Sbjct: 19 LNERKIIKGNSTNIFNLNNVKYGWANHLYRTMMGNFWIPEKIDLTQDRVDY---NNLTNY 75 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ L F +S+ NNI I +++ PE L Q F+EA+HS ++QYII S Sbjct: 76 EKEAYDGILSFLIFLDSIQTNNIP-NISDYITAPEINLILSIQTFQEAIHSQSYQYIIES 134 Query: 138 LGLDEGE--LFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + E +++ +RE + + + + Y L +P D+ F + + Y+ Sbjct: 135 ILPKETRNYIYDKWREDKILFERNRYIAEIYQNFLDNPD--------DKNFARVIVADYL 186 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + E ++FY GF L N+M+G ++ + I RDE H+ +I +++ ENP+ + Sbjct: 187 L-ESIYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVIFQQMIKEVQNENPNFFD 245 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + + M +A EI++ + + +G+ + E Y +++AN R IGL+PL++ Sbjct: 246 ENIIYE---MFEKAVEQEISWTNHIIGGNILGITEKTTESYTKWLANERLKSIGLQPLYE 302 Query: 315 -YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 Y +NP+ + D + E NFFE VT Y + ++ WD Sbjct: 303 GYEKNPYKHLERFADTEGEGNVKANFFEGTVTSYNMSSSVEGWD 346 >gi|297449|emb|CAA46231.1| ribonucleotide reductase, small subunit [Schizosaccharomyces pombe] gi|447147|prf||1913428B ribonucleotide reductase:SUBUNIT=small Length = 391 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 93/314 (29%), Positives = 148/314 (47%), Gaps = 27/314 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W +K L DER I L +FA+S+ Sbjct: 78 LFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNK--LNADERYFISTVLAYFAASD 135 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 +V N++ + PE R Q E +HS T+ ++ + + E F+ Sbjct: 136 GIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLLLDTYIREPKEKQRHFDAIL 195 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + SI AKA WAL++ D D + L F V EG++F FA I Sbjct: 196 TMGSIKAKAKWALRWIN------------DEDSTYAIRLVAFAAV-EGIFFSGSFASIFW 242 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ + ++ EA Sbjct: 243 LKKRGLMPGLTFSNELICRDEGLHTDFACLMFS-------HLKHRPGRKLLKPIIVEAVD 295 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E Y + +P +G+N QY++F+A+R +G + + T NPF +M E I L Sbjct: 296 IEKEYFTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDKYYNVT-NPFDFM-ENISLA 353 Query: 331 KEKNFFETRVTEYQ 344 + NFFE +V++YQ Sbjct: 354 GKTNFFEKKVSDYQ 367 >gi|15150459|ref|NP_150454.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease virus NI-2490] gi|15149031|gb|AAK84981.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease virus NI-2490] gi|22595554|gb|AAN02587.1| ribonucleotide reductase small subunit [Lumpy skin disease virus NW-LW] Length = 321 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 147/315 (46%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DLA WK L+++E+ IK L FFA+S+ Sbjct: 14 VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LSNEEQYFIKNILAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII---TSLGLDEGELFNMYR 150 +V N+ Y + E R + Q E +HS + +I S ++ LFN Sbjct: 71 GIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKEKEHLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + I K+ WA ++ + F + L F V EG++F FA I Sbjct: 131 TMDFIKKKSEWARKWIS------------NKKASFGERLIAFAAV-EGIFFSGSFAAIFW 177 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + +K + + +++EA Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKYPPSN-------EIITIIINEAVS 230 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N QY++FIA+R ++G + +F T NPF +M E I L+ Sbjct: 231 IEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVFMST-NPFDFM-ENISLE 288 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV+EYQ+ Sbjct: 289 GKTNFFEKRVSEYQK 303 >gi|323098642|gb|ADX22879.1| ribonucleotide reductase small subunit [Monkeypox virus] Length = 319 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 87/315 (27%), Positives = 142/315 (45%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FF +S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFXASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGXGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R ++ A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRFIITNAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|302381236|ref|YP_003817059.1| ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides ATCC 15264] gi|302191864|gb|ADK99435.1| Ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides ATCC 15264] Length = 348 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 86/313 (27%), Positives = 143/313 (45%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D W + L D ER ++ + FF S+ Sbjct: 23 PFRYPWAFDMWKKQQQVHWMPEEVPLGEDCKDWAAN--LNDKERNLLTQIFRFFTQSDIE 80 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 VA+N + R E + L A E +H + ++ ++G+ E E F + E ++ Sbjct: 81 VADNYMEKYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 139 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K + + QT D + + + L +F EG+ + FA +++ R N Sbjct: 140 RDKHD----FMQTFGV--------DTEADIARTLAMFGGFTEGLQLFASFAMLMNFPRQN 187 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH + I + + E + TK LE + Sbjct: 188 KMKGMGQIVSWSVRDESLHCDGIIKLYHAFNKETGVV-TKAVADDIVQCCETVVGLEDKF 246 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G + G+ +QY++FIA+ R Q+ L L+ ENP PW+ ++ + N Sbjct: 247 IDLAFEAGEINGMTPEDIKQYIRFIADWRLRQLKLPELYGVKENPLPWLQSLLSGVEHAN 306 Query: 335 FFETRVTEYQQGA 347 FFE R TEY + A Sbjct: 307 FFEARATEYSKAA 319 >gi|88682973|gb|AAI05512.1| RRM2 protein [Bos taurus] Length = 338 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 88/294 (29%), Positives = 144/294 (48%), Gaps = 29/294 (9%) Query: 56 PTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 P+E V + D+ W++ L +ER I L FFA+S+ +V N+V + + E R Sbjct: 52 PSEPVDLSKDIQHWEA---LKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 108 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171 + Q E +HS + +I + D E LFN +P + KA+WAL++ + Sbjct: 109 CFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRW---IGD 165 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + T G + V + EG++F FA I L + M G+ + I RDE Sbjct: 166 KAATYGER----------VVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 215 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 LH +F + HL K +Q+ + ++ A +E + E +P +G+N Sbjct: 216 GLHCDFACLMFK-------HLLHKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTL 268 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 269 MKQYIEFVADRLMLELGFSKVFR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 320 >gi|74229799|ref|YP_309003.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV] gi|72259713|gb|AAZ67484.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV] Length = 318 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 90/317 (28%), Positives = 149/317 (47%), Gaps = 26/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ W+ Y A + HW E+ M D W +K L D ER +K L FFA+++ Sbjct: 9 LFPIVNEDLWQSYKKALDCHWKVEEIDMSKDFDDWNNK--LNDKERFFLKHVLAFFAAAD 66 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V NI+ + + E + +Q E VH+ + ++ D E + N Sbjct: 67 VIVNTNIIEHMQSAVPEMEASFFYAQQTSIECVHTEMYNILVVEYIKDPQECDRILNAIE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + S+ KA WA ++ ++ ++ F + + F +V EG++F FA I Sbjct: 127 HIDSVKRKATWAQKWIESQTAT------------FAERMVAFAIV-EGVFFSGSFAAIYY 173 Query: 211 LGRANK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 + K + G+ + I RDE LH +F N+ + L + K M EA Sbjct: 174 IKDTKKGALPGLTYSNELISRDEGLHTDFACLYYNKYIAKEDKLS----ESKVLNMFKEA 229 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +E + +P +G+NA S +Y++F+A+R ++G E FK T NPF +M+ I Sbjct: 230 VDIEKDFFTNALPVAMLGMNAHSMCEYIEFVADRLLIELGYEKYFK-TLNPFEFMNN-IS 287 Query: 329 LKKEKNFFETRVTEYQQ 345 L+ + NFFE RV EY++ Sbjct: 288 LEGKTNFFEKRVGEYKR 304 >gi|16124515|ref|NP_419079.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter crescentus CB15] gi|221233200|ref|YP_002515636.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter crescentus NA1000] gi|13421393|gb|AAK22247.1| ribonucleoside-diphosphate reductase, beta subunit [Caulobacter crescentus CB15] gi|220962372|gb|ACL93728.1| ribonucleoside-diphosphate reductase beta chain [Caulobacter crescentus NA1000] Length = 347 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 85/313 (27%), Positives = 145/313 (46%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +DL W K L D ER ++ + FF S+ Sbjct: 21 PFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWAVK--LNDKERNLLTQIFRFFTQSDVE 78 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L A E +H + ++ ++G+ E E F+ + E ++ Sbjct: 79 VQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYEAM 137 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 AK + Y QT D++ + + L +F EG+ + FA +++ R N Sbjct: 138 KAKHD----YMQTFGV--------DSNADICRTLAMFGGFTEGLQLFASFAMLMNFPRFN 185 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH + I + + E + TK +E + Sbjct: 186 KMKGMGQIVSWSIRDESLHCDGIIKLYHAFNKETGAV-TKAVADDIVDCCKTVVGMEDNF 244 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G + G+ + Y++F+A+ R Q+ L ++ ENP PW+ ++ + N Sbjct: 245 IDLAFEAGDIQGMTPDDIKAYIRFVADWRLRQLHLPEVYGVKENPLPWLQSLLSGVEHAN 304 Query: 335 FFETRVTEYQQGA 347 FFE R TEY + A Sbjct: 305 FFEARATEYSKAA 317 >gi|19113338|ref|NP_596546.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces pombe 972h-] gi|9297110|sp|P36603|RIR2_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|3378511|emb|CAA20100.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces pombe] Length = 391 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 93/314 (29%), Positives = 147/314 (46%), Gaps = 27/314 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY W+ Y A + W E+ + DL W +K L DER I L +FA+S+ Sbjct: 78 LFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWDNK--LNADERYFISTVLAYFAASD 135 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 +V N++ + PE R Q E +HS T+ ++ + + E F+ Sbjct: 136 GIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLLLDTYIREPKEKQRHFDAIL 195 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + SI AKA WAL++ D D + L F V EG++F FA I Sbjct: 196 TMGSIKAKAKWALRWIN------------DEDSTYAIRLVAFAAV-EGIFFSGSFASIFW 242 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + HL + ++ ++ EA Sbjct: 243 LKKRGLMPGLTFSNELICRDEGLHTDFACLMFS-------HLKHRPGRKVVEAIIVEAVD 295 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E Y + +P +G+N QY++F+A+R +G + + T NPF +M E I L Sbjct: 296 IEKEYFTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDKYYNVT-NPFDFM-ENISLA 353 Query: 331 KEKNFFETRVTEYQ 344 + NFFE +V++YQ Sbjct: 354 GKTNFFEKKVSDYQ 367 >gi|323098445|gb|ADX22683.1| ribonucleotide reductase small subunit [Monkeypox virus] Length = 319 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/315 (27%), Positives = 142/315 (45%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT DE+ IK L FF +S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYFIKHVLAFFXASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ R ++ A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSEETVRFIITNAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ T NPF +M E I L+ Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|295691241|ref|YP_003594934.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC 21756] gi|295433144|gb|ADG12316.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC 21756] Length = 346 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/313 (27%), Positives = 144/313 (46%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +DL W K L D ER ++ + FF S+ Sbjct: 21 PFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWAVK--LNDKERNLLTQIFRFFTQSDVE 78 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L A E +H + ++ ++G+ E E F+ + E ++ Sbjct: 79 VQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYEAM 137 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K + Y QT D++ + + L +F EG+ + FA +++ R N Sbjct: 138 KDKHD----YMQTFGV--------DSNADICRTLAMFGGFTEGLQLFASFAMLMNFPRFN 185 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH + I + + E + TK LE + Sbjct: 186 KMKGMGQIVSWSIRDESLHCDGIIKLYHAFNKETGAV-TKAVADDIVDCCKHVVGLEDKF 244 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G + G+ + Y++FIA+ R Q+ L ++ ENP PW+ ++ + N Sbjct: 245 IDLAFEAGEIQGMTPDDIKSYIRFIADWRLRQLQLPEVYGVKENPLPWLQSLLSGVEHAN 304 Query: 335 FFETRVTEYQQGA 347 FFE R TEY + A Sbjct: 305 FFEARATEYSKAA 317 >gi|62866936|gb|AAY17359.1| ribonucleotide reductase small subunit [Haemonchus contortus] Length = 374 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/320 (29%), Positives = 155/320 (48%), Gaps = 25/320 (7%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + PLKY W Y A + W EV + D+A W+ +TD+ER I R L FFA+S+ Sbjct: 62 IFPLKYHDIWAFYKKAVASFWTVEEVDLAKDMADWEK---MTDNERFFISRVLAFFAASD 118 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E +HS + +I + DE E LFN Sbjct: 119 GIVNENLVERFSKEVQVPEARFFYGSQIAIENIHSEMYSKLIETYIRDEKERNILFNAIF 178 Query: 151 EVPSITAKANWALQYT-QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 EVP I KA WA++ QT+++P F + + F V G F G I Sbjct: 179 EVPCIAKKAEWAVKMGLQTITAP------------FAERVIAFAAV-GGNIFSLGPVAIP 225 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 G K G + + + + + G+ I+ + H+ K Q++ ++ +A Sbjct: 226 FSGLKKK--GDWRGWSHSILRSLIQGDEGVHAISHVCCIQ-HIKNKLSQERIYYIIRDAV 282 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +E + E++P +G+N QY++++A+ ++G E + K ++NPF +M E I + Sbjct: 283 AIEQEFLSESLPVDMIGMNCRLMCQYIEYVADHLLVELGCEKICK-SKNPFDFM-ENISI 340 Query: 330 KKEKNFFETRVTEYQQGAEL 349 + NFFE +V+EYQ+ L Sbjct: 341 DGKTNFFEKKVSEYQRPGVL 360 >gi|225386408|ref|ZP_03756172.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme DSM 15981] gi|225047489|gb|EEG57735.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme DSM 15981] Length = 347 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/342 (27%), Positives = 161/342 (47%), Gaps = 17/342 (4%) Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 G+ VN+ +RM+ + ++N +KY W Y A NN W+P E+ M D+ K Sbjct: 14 GDTEVNL--RRMIGGNTTNLNDFNNMKYAWVSGWYRQAMNNFWIPEEINMSSDI---KDY 68 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 L + ER + L F +S+ N+ I ++++ E L Q F+EAVHS ++ Sbjct: 69 PELPEAERTAYDKILSFLIFLDSIQTANLP-NIGQYITANEVNLCLTIQGFQEAVHSQSY 127 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 Y++ ++ + R K + L T + D + L + + Sbjct: 128 SYMLDTI------CSPVERNTILYQWKDDEHLLRRNTFIGELYNEFQDKKDAQTLLRVMM 181 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++I ++K E P Sbjct: 182 ANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLLRNMILELKKEEPQ 241 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L++ E + + M+ E EIA+ H + GL +Y++++ N R +G EP Sbjct: 242 LFSPETVEMLKAMVEEGVEQEIAWGHYVIGDRISGLTREMVTEYIRYLGNLRWTSLGFEP 301 Query: 312 LFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 L++ Y E P W+ + + K +FFE + T Y + L Sbjct: 302 LYEGYEEEPESMKWVGQYSNANMVKTDFFEAKSTAYAKSTAL 343 >gi|332971065|gb|EGK10035.1| ribonucleotide-diphosphate reductase beta subunit [Desmospora sp. 8437] Length = 342 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/328 (26%), Positives = 161/328 (49%), Gaps = 19/328 (5%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ++N RS +V ++ WA+ Y + N W P E+ M +D+ W L ++E++ Sbjct: 18 IINGRSSNVLNWDDCRFPWAYPLYKNMLANFWTPFEINMSEDIKQWGR---LAEEEQVAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140 K+ +G A +S + + + +L++ + +F+E VH+ ++ Y+++SL Sbjct: 75 KKIIGLLAFLDS-IQTDYSSKVADYLTDSSLAALMTVLSFQEVVHNQSYSYVLSSLVTRR 133 Query: 141 DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 ++ E+F ++ + + + ++ Y + P T FL+ + V+ V+ EG+ Sbjct: 134 EQEEVFEYWKHDQVLRERNEFIVEGYQAFVEKPEPLT--------FLRSI-VYDVILEGL 184 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 FY+GFA +L R KMV + YI RDE LH+ + + ++ E P L T+E + Sbjct: 185 NFYSGFAFFYNLARHQKMVSTSTMINYINRDEQLHVRLFVQIYRELLEEIPELNTEENRN 244 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTEN 318 A LEI + + F G+ Y++F+AN+R H++G E P Y +N Sbjct: 245 FVTESFRRAAELEIRWGETVLGDRFDGIRPDELRAYIRFMANKRAHELGAERPFAGYRKN 304 Query: 319 PFPWMSEVIDLKKEK-NFFETRVTEYQQ 345 P W+ D+ + K +FFE + +Y + Sbjct: 305 PMRWVIAYQDVNRGKQDFFEGKSRQYSK 332 >gi|13876672|gb|AAK43560.1| ribonucleoside reductase [lumpy skin disease virus] Length = 321 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 145/315 (46%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DLA WK L ++E+ IK L FFA+S+ Sbjct: 14 VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LNNEEQYFIKNILAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII---TSLGLDEGELFNMYR 150 +V N+ Y + E R + Q E +HS + +I S ++ LFN Sbjct: 71 GIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKEKEHLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + I K+ WA ++ + F + L F V EG++F FA I Sbjct: 131 TMDFIKKKSEWARKWIS------------NKKASFGERLIAFAAV-EGIFFCGSFAAIFW 177 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + +K + +++EA Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKYPPSN-------DIITIIINEAVS 230 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N QY++FIA+R ++G + +F T NPF +M E I L+ Sbjct: 231 IEKEFLTNIIPVKLIGMNCVLMSQYIEFIADRLLLELGCDKVFMST-NPFDFM-ENISLE 288 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV+EYQ+ Sbjct: 289 GKTNFFEKRVSEYQK 303 >gi|291562343|emb|CBL41159.1| Ribonucleotide reductase, beta subunit [butyrate-producing bacterium SS3/4] Length = 346 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/348 (27%), Positives = 160/348 (45%), Gaps = 19/348 (5%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E ++V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 PLFNPEGNLDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDV-- 64 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L ER + L F +S+ N+ I +++ E L QAF+E VH Sbjct: 65 -KDYPRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECVH 122 Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 S ++ Y++ ++ ++ ++ + K + L T + + D Sbjct: 123 SQSYSYMLDTICSPVERNDILYQW--------KTDEHLLRRNTFIGDCYNEFQERKDAPT 174 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L + + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++ Sbjct: 175 LLRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITEL 234 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 + E P L+T Q R M+ E EIA+ H + GLN Y++++ N R Sbjct: 235 QKEQPELFTAGSVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWT 294 Query: 306 QIG---LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 +G L P F+ W+S+ D K +FFE R T Y + L Sbjct: 295 SLGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTAL 342 >gi|22595713|gb|AAN02745.1| ribonucleotide reductase small subunit [lumpy skin disease virus] Length = 321 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/315 (29%), Positives = 145/315 (46%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DLA WK L ++E+ IK L FFA+S+ Sbjct: 14 VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWKK---LNNEEQYFIKNILAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII---TSLGLDEGELFNMYR 150 +V N+ Y + E R + Q E +HS + +I S ++ LFN Sbjct: 71 GIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKEKEHLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + I K+ WA ++ + F + L F V EG++F FA I Sbjct: 131 TMDFIKKKSEWARKWIS------------NKKASFGERLIAFAAV-EGIFFSGSFAAIFW 177 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + +K + +++EA Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKYPPSN-------DIITIIINEAVS 230 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N QY++FIA+R ++G + +F T NPF +M E I L+ Sbjct: 231 IEKEFLTNIIPVKLIGMNCVLMSQYIEFIADRLLLELGCDKVFMST-NPFDFM-ENISLE 288 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV+EYQ+ Sbjct: 289 GKTNFFEKRVSEYQK 303 >gi|73979723|ref|XP_856346.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain (Ribonucleotide reductase small chain) isoform 3 [Canis familiaris] Length = 381 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 144/315 (45%), Gaps = 41/315 (13%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + D+ W+S L +ER I L FFA+S+ Sbjct: 87 IFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASD 143 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 144 GIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIE 203 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL++ G K+A + V + EG++F FA I Sbjct: 204 TMPCVKKKADWALRW----------IGDKEAT---YGERVVAFAAVEGIFFSGSFASIFW 250 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL K +Q+ + ++ A Sbjct: 251 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPSEQRVKEIIINAVR 303 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +G+N +QY++F+ ENPF +M E I L+ Sbjct: 304 IEQEFLTEALPVKLIGMNCTLMKQYIEFVFR--------------VENPFDFM-ENISLE 348 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 349 GKTNFFEKRVGEYQR 363 >gi|224007863|ref|XP_002292891.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971753|gb|EED90087.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 297 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 28/305 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W E+ + +DL W + LT +ER + L FFA+S+ +V N+ Sbjct: 2 YKKAEASFWTAEEIDLAEDLKDW---DALTANERHFVSHILAFFAASDGIVNENLTGNFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 +++PE R + Q E +HS T+ +I + D E L N VP + KA+WA Sbjct: 59 TEVTSPEARCFYGFQIAVENIHSETYSLLIDTYIKDSTEKNHLLNAIETVPCVQKKAHWA 118 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L++ DA + + + EG++F F I L + M G+ Sbjct: 119 LKWC-------------DAGNASFAERMIAFAAVEGIFFSGSFCAIFWLKKRGLMPGLCF 165 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I RDE LH +F + +++ + P + + ++ A +E + + +P Sbjct: 166 SNELISRDEGLHCDFACLLYSKLVNKLP-------ESRITKIITVAVEIEKEFVSDALPV 218 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 +G+N+ Y++F A+R +G + T NPF WM E+I L+ + NFFE RV E Sbjct: 219 ELIGMNSKLMCDYIEFCADRLLGALGCSKFYNAT-NPFEWM-EMISLQGKTNFFEKRVGE 276 Query: 343 YQQGA 347 Y + Sbjct: 277 YAKSG 281 >gi|160942848|ref|ZP_02090088.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii M21/2] gi|158445900|gb|EDP22903.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii M21/2] Length = 347 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/348 (27%), Positives = 159/348 (45%), Gaps = 19/348 (5%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E +V +RM + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNPEGDPDVRLRRMTGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDV-- 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L ER + L F +S+ N+ I +++ E L QAF+E VH Sbjct: 66 -KDYPRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECVH 123 Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 S ++ Y++ ++ ++ ++ + K + L T + + D Sbjct: 124 SQSYSYMLDTICSPVERNDILYQW--------KTDEHLLRRNTFIGDCYNEFQERKDAPT 175 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L + + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++ Sbjct: 176 LLRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITEL 235 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 + E P L+T E Q R M+ E EIA+ H + GLN Y++++ N R Sbjct: 236 QKEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWT 295 Query: 306 QIG---LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 +G L P F+ W+S+ D K +FFE R T Y + L Sbjct: 296 SLGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTAL 343 >gi|210631890|ref|ZP_03297102.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279] gi|210159815|gb|EEA90786.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279] Length = 352 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/348 (27%), Positives = 167/348 (47%), Gaps = 19/348 (5%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + ++V D+RM+ + ++N +KY W Y A NN W+P E+ + D+ Sbjct: 13 PLFNPDGDLDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINLTQDV-- 70 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K LT ER + L F +SL + N+ I +++ E L QAF+E+VH Sbjct: 71 -KDYPRLTAAERAAYDKILSFLVFLDSLQSANLP-NIAEYITANEVNLCLSIQAFQESVH 128 Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 S ++ Y++ ++ E+ ++ + A+ + +DA + F Sbjct: 129 SQSYSYMLDTICDPAKRNEILYQWKTDEPLLARNTFIGNLYNEFQE------RRDA-RTF 181 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L+ L +++ EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++ Sbjct: 182 LRVLMANFIL-EGVYFYSGFMFFYNLARMGKMPGSAQEIRYINRDENTHLWLFRNIILEL 240 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 + E P L+T E + R ML E EIA+ + GL E Y++++ N R Sbjct: 241 QKEEPQLFTSENVEMLRQMLEEGVRQEIAWGRYVLGDAIPGLTGDMVEGYIKYLGNLRWS 300 Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 +G L++ Y P W+S+ + K +FFE + T Y + L Sbjct: 301 SLGFGQLYEGYRSEPEDMAWVSQYSNANMVKTDFFEAKSTAYAKSTAL 348 >gi|148554425|ref|YP_001262007.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas wittichii RW1] gi|148499615|gb|ABQ67869.1| Ribonucleoside-diphosphate reductase [Sphingomonas wittichii RW1] Length = 350 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/313 (25%), Positives = 151/313 (48%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HW+P EVP+ +D W K LTD ER ++ + FF ++ Sbjct: 12 PFEYPWAFEYWKRQQQLHWLPEEVPLGEDCRDWAQK--LTDHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + R E + L + E VH + +++ ++G+ E E ++ + + + Sbjct: 70 VQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQYKEM 128 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K ++ +T D D++ + L +F EG+ + FA +++ R N Sbjct: 129 KDKHDY------------LSTFGVDTDEDIARTLAMFGGFTEGLQLFASFAMLMNFPRFN 176 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDE+LH GI + ++ T + M + +E A+ Sbjct: 177 KMKGMGQIVTWSIRDETLHCE-GIVRLFHAFVKERDCLTASVKDDILDMCQKTVRIEDAF 235 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G V G+ ++Y+++IA+ R Q+GL+P++ ++P PW++ +++ + N Sbjct: 236 IDLVFEMGPVNGMTPKDIKKYVRYIADWRLGQLGLKPIYMIEDHPLPWLAPLLNGVEHAN 295 Query: 335 FFETRVTEYQQGA 347 FFETR TEY + A Sbjct: 296 FFETRATEYSKAA 308 >gi|209877302|ref|XP_002140093.1| ribonucleotide-diphosphate reductase, small subunit [Cryptosporidium muris RN66] gi|209555699|gb|EEA05744.1| ribonucleotide-diphosphate reductase, small subunit, putative [Cryptosporidium muris RN66] Length = 346 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 87/327 (26%), Positives = 154/327 (47%), Gaps = 29/327 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L++ + ++Q++ + W Y + W E+ + D+ W+S L + E+ IK Sbjct: 30 VLSSDTRLHQIIKSEIEVMWSMYKKEEASFWTAEEIDLGQDMRDWES---LKEPEKHFIK 86 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII---TSLGL 140 L FFA+S+ +V N+ + + + E R Y Q E +HS T+ +I S Sbjct: 87 YVLAFFAASDGIVMENLAVNFLKEIQIEEARMYYGFQIAMEQIHSETYSLLIDQYISDVK 146 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 D LF +P++ KA WA ++ ++ F + + F V EG+ Sbjct: 147 DRQMLFEAISHLPAVKTKAKWATKWMNN-------------NRSFAERIIGFCAV-EGIL 192 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE +H +FG + + P+ +E Sbjct: 193 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGIHADFGCLLYKTLNNRLPYGRVQE---- 248 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E A+ +++P +G+N+ QY++F+A+R + + ++ T NPF Sbjct: 249 ---IIAEAVEVERAFLCDSLPVDLIGMNSRLMAQYIEFVADRLLFALDVPKIYNVT-NPF 304 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM ++I L+ + NFFE RV EYQ Sbjct: 305 DWM-DLISLQGKTNFFEKRVAEYQMAG 330 >gi|282879357|ref|ZP_06288101.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella buccalis ATCC 35310] gi|282881358|ref|ZP_06290037.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella timonensis CRIS 5C-B1] gi|281298554|gb|EFA90979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella buccalis ATCC 35310] gi|281304764|gb|EFA96845.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella timonensis CRIS 5C-B1] Length = 347 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/336 (27%), Positives = 158/336 (47%), Gaps = 15/336 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N +KY WA + Y A NN W+P E+ + D K L ER Sbjct: 21 RRMIGGNTTNLNDFNNMKYQWASDWYRQAMNNFWIPEEINLTQDT---KDYPRLDKAERT 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +SL +NN+ ++ +++ E L QAF+E VHS ++ Y++ ++ Sbjct: 78 AYDKILSFLVFLDSLQSNNLP-SLCEYITANEVNLCLHIQAFQECVHSQSYSYMLDTICS 136 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E +Y+ K + L T + + D L + + EG++ Sbjct: 137 PEQRNDILYQ------WKTDEHLLRRNTFIGNCYNEFHEKQDLYALMKTCIANFILEGIY 190 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E P ++T E + Sbjct: 191 FYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIKELKKEEPEMFTPEKVKV 250 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN-- 318 M+ E EIA+ + GLNA Y+ ++ N R H +G + L++ + Sbjct: 251 YEEMMREGVRQEIAWGQYVIGNDIQGLNAQMVTDYIHYLGNLRWHSLGFDYLYEDNQKEP 310 Query: 319 -PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 W+++ D K +FFE + T Y + ++ D Sbjct: 311 EDMKWVAQYSDPNMVKTDFFEAKSTAYAKSTAIEDD 346 >gi|306819883|ref|ZP_07453537.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552130|gb|EFM40067.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 347 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/349 (26%), Positives = 165/349 (47%), Gaps = 31/349 (8%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + ++ ++M+N + ++N +KY W + Y A NN W+P E+ + D+ K L+ Sbjct: 16 IELNKRKMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLTQDI---KDYRKLS 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +E+ + L F +S+ N+ I +++ E L QA++EA+HS ++ YI+ Sbjct: 73 KEEKNAYDKILSFLVFLDSIQTANLP-NIGEYITANEVNLCLTIQAYQEAIHSQSYGYIL 131 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 + + S + N Q+ + D EF D F +V Sbjct: 132 DT--------------ICSPEERTNILYQWKDDELLLARNKFIGDLYNEFYYDRSDFNLV 177 Query: 196 --------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 EG++FY+GF SLGR KM G ++ +YI RDE+ HL ++ ++K Sbjct: 178 KTAVANYILEGIYFYSGFMFFYSLGRIGKMPGTVQEIRYINRDENTHLWLFRSILLELKK 237 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E H++T+E R M+ + EI +A + GL+ E Y++++ N RC + Sbjct: 238 EEAHIFTQENINLFRNMIKQGVEEEIRWAKYAIGDNIQGLSMSMIEDYLKYLGNLRCKGL 297 Query: 308 GLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 G + +++ Y + P W+SE D K +FFE +V+ Y + ++ D Sbjct: 298 GFDNIYEGYEKEPESMSWVSEYSDPNAIKTDFFEAKVSAYAKSTVIEDD 346 >gi|42525851|ref|NP_970949.1| ribonucleotide-diphosphate reductase subunit beta [Treponema denticola ATCC 35405] gi|41815901|gb|AAS10830.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema denticola ATCC 35405] Length = 351 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 89/335 (26%), Positives = 163/335 (48%), Gaps = 19/335 (5%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++M+ + ++N +KY WA + Y A NN W+P E+ M D+ ++ L+ E+ Sbjct: 25 RKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQDYRK---LSIPEKT 81 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +S+ N+ + ++++ E L QAF+EAVHS ++ Y++ ++ Sbjct: 82 AYDKILSFLIFLDSIQTANLP-NVGQYVTANEVNLCLTIQAFQEAVHSQSYSYMLDTICS 140 Query: 141 DE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E+ +++ + + + S FL+ Y++ EG Sbjct: 141 PEERTEILYQWKDDEHLLRRNKFIGDLYNEFQSDKSALA-------FLKVCVANYIL-EG 192 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++FY+GF +LGR NKM G ++ +YI RDE+ HL +I +++ E P L+T + Sbjct: 193 IYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSMIQELQKEEPQLFTPQNV 252 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317 + R M+ E EIA+ + GLN+ Y+Q++ N RC +G P++ + E Sbjct: 253 ELFRAMIKEGCEQEIAWGDYVIGNDIPGLNSQMITDYIQYLGNLRCENLGFAPIYDGHRE 312 Query: 318 NP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 P W S+ + K +FFE + T Y + + + Sbjct: 313 EPQSMSWASQYSNANLIKTDFFEAKSTAYAKSSAM 347 >gi|254418345|ref|ZP_05032069.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas sp. BAL3] gi|196184522|gb|EDX79498.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas sp. BAL3] Length = 349 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/313 (26%), Positives = 143/313 (45%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVP+ +D+ W S L D+ER ++ + FF ++ Sbjct: 24 PFRYPWAFDMWKKQQQVHWMPEEVPLGEDVKDWAST--LNDNERNLLTQIFRFFTQADIE 81 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L E +H + ++ ++G+ E E F + E ++ Sbjct: 82 VQDNYMERYGRVFKPTEIKMMLAAFGNMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 140 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K ++ Q+ D+D + + L +F EG+ + FA +++ R N Sbjct: 141 RDKHDYMGQFG------------VDSDADICRTLAMFGGFSEGVQLFASFAMLMNFPRQN 188 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH I + + E + TK +E + Sbjct: 189 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETGAV-TKAVADDIVDCCKTVVNMEDRF 247 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G V G+ +QY++FIA+ R Q+ L ++ ENP PW+ ++ + N Sbjct: 248 IDLAFEMGSVQGMTPEDIKQYIRFIADWRLRQLKLPEVYGVKENPLPWLQSLLSGVEHAN 307 Query: 335 FFETRVTEYQQGA 347 FFE R TEY + A Sbjct: 308 FFEARATEYSKAA 320 >gi|319936387|ref|ZP_08010803.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus sp. 29_1] gi|319808502|gb|EFW05054.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus sp. 29_1] Length = 346 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 96/346 (27%), Positives = 170/346 (49%), Gaps = 25/346 (7%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 ++V +RM+N + ++N +KY W + Y A NN W+P E+ + D+ K L Sbjct: 15 IDVRKRRMINGNTTNLNDFNNMKYNWVSDWYRQAMNNFWIPEEINLTQDI---KDYRLLN 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + E+ + L F +SL N+ + +++ E L QAF+EAVHS ++ Y++ Sbjct: 72 EHEKTAYDKILSFLVFLDSLQTANLP-NVGEYITANEINLCLTIQAFQEAVHSQSYSYML 130 Query: 136 TSLG--LDEGELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 S+ ++ E+ ++ + + + QY L KD+ F++ + Sbjct: 131 DSICSPIERDEILYQWKYDEHLLKRNEFIGEQYNAFLEH-------KDSFH-FMKTVIAN 182 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 Y++ EG++FY+GF +LGR KM G A++ +YI RDE+ HL ++I +++ E P L Sbjct: 183 YIL-EGIYFYSGFMFFYNLGRMGKMPGSAQEIRYINRDENTHLWLFRNMILELQKEEPDL 241 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 +T + + R M+ EIA+ + GL Y+ ++ N R + EPL Sbjct: 242 FTPDKIEVYRDMMKRGVEEEIAWGQYVLGDRIEGLTMKMVSDYIHYLGNFRAQALNFEPL 301 Query: 313 FK-YTENP--FPWM---SEVIDLKKEKNFFETRVTEYQQGAELKWD 352 F+ Y + P W+ S D+K + FFE R + Y + + L+ D Sbjct: 302 FEDYMQEPESMKWVSIYSNANDIKTD--FFEARSSAYAKSSALEDD 345 >gi|118497575|ref|YP_898625.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. novicida U112] gi|195536272|ref|ZP_03079279.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella tularensis subsp. novicida FTE] gi|208779374|ref|ZP_03246720.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella novicida FTG] gi|254372936|ref|ZP_04988425.1| hypothetical protein FTCG_00507 [Francisella tularensis subsp. novicida GA99-3549] gi|118423481|gb|ABK89871.1| bifunctional protein: glutaredoxin 3 /ribonucleotide reductase beta subunit [Francisella novicida U112] gi|151570663|gb|EDN36317.1| hypothetical protein FTCG_00507 [Francisella novicida GA99-3549] gi|194372749|gb|EDX27460.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella tularensis subsp. novicida FTE] gi|208745174|gb|EDZ91472.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella novicida FTG] gi|332678274|gb|AEE87403.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Francisella cf. novicida Fx1] Length = 410 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK NG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213 +T K ++ + + P+ G L + VF EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 324 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + G + GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 325 KFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384 Query: 333 KNFFETRVTEYQ-QGAELKWD 352 NFFE RVTEY+ G WD Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405 >gi|57339646|gb|AAW49810.1| hypothetical protein FTT0532 [synthetic construct] Length = 445 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK NG +T E+ I L F S+ Sbjct: 128 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 185 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 186 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 244 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213 +T K ++ + + P+ G L + VF EG+ + FA +L+ R Sbjct: 245 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 290 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 291 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 350 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + G + GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 351 RFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 410 Query: 333 KNFFETRVTEYQ-QGAELKWD 352 NFFE RVTEY+ G WD Sbjct: 411 TNFFENRVTEYEVAGLTGSWD 431 >gi|134301991|ref|YP_001121960.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis WY96-3418] gi|134049768|gb|ABO46839.1| biofunctional glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase beta subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 410 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK NG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213 +T K ++ + + P+ G L + VF EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 324 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + G + GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 325 RFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384 Query: 333 KNFFETRVTEYQ-QGAELKWD 352 NFFE RVTEY+ G WD Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405 >gi|254374389|ref|ZP_04989871.1| glutaredoxin [Francisella novicida GA99-3548] gi|151572109|gb|EDN37763.1| glutaredoxin [Francisella novicida GA99-3548] Length = 410 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK NG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213 +T K ++ + + P+ G L + VF EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 324 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + G + GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 325 KFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384 Query: 333 KNFFETRVTEYQ-QGAELKWD 352 NFFE RVTEY+ G WD Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405 >gi|255658865|ref|ZP_05404274.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella multacida DSM 20544] gi|260849270|gb|EEX69277.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella multacida DSM 20544] Length = 347 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 93/349 (26%), Positives = 169/349 (48%), Gaps = 21/349 (6%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E ++V +R++ + ++N LKY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNPEGDIDVTQRRLIGGNTTNMNDFNNLKYTWTADWYRQAMNNFWIPEEINLGQDV-- 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L ER + L F +S+ + N+ + +++ E L Q+F+E VH Sbjct: 66 -KDYRQLPAAERRAYDKILSFLVFLDSVQSANLP-NVSAYITANEVDLCLTIQSFQECVH 123 Query: 128 SHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE- 184 S ++ Y++ ++ + E+ +++ + A+ T + ++ +E Sbjct: 124 SQSYSYMLDTIASPDERQEIIFQWKDDEHLLAR--------NTFIGDLYNEFQQEQSREN 175 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 FL+ L Y++ EG++FY+GF +LGR +M G ++ +YI RDE+ HL +++ Sbjct: 176 FLRVLIANYIL-EGIYFYSGFMFFYNLGRIGRMPGSVQEIRYINRDENTHLWLFRNILRD 234 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 ++ E P L+T E ++ R M+ E EIA+ + GLN E Y+ ++ N R Sbjct: 235 LRAEEPDLFTPEREEMMREMIREGVRQEIAWGKYAIGNEVEGLNEKMIEDYVHYLGNARA 294 Query: 305 HQIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 IGL L++ + E P W+S+ + K +F E R T Y + L Sbjct: 295 ESIGLGTLYEGFEEEPSSMRWVSQYANPNFIKTDFIEGRSTAYAKSTAL 343 >gi|89256330|ref|YP_513692.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica LVS] gi|115314778|ref|YP_763501.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica OSU18] gi|156502403|ref|YP_001428469.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010840|ref|ZP_02275771.1| ribonucleotide-diphosphate reductase beta subunit [Francisella tularensis subsp. holarctica FSC200] gi|254367665|ref|ZP_04983686.1| biofunctional protein: glutaredoxin 3 protein-ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. holarctica 257] gi|290952877|ref|ZP_06557498.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica URFT1] gi|295313922|ref|ZP_06804487.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica URFT1] gi|89144161|emb|CAJ79423.1| Biofunctional protein, glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. holarctica LVS] gi|115129677|gb|ABI82864.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp. holarctica OSU18] gi|134253476|gb|EBA52570.1| biofunctional protein: glutaredoxin 3 protein-ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. holarctica 257] gi|156253006|gb|ABU61512.1| bifunctional glutaredoxin /ribonucleoside-diphosphate reductase beta subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 410 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK NG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213 +T K ++ + + P+ G L + VF EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 324 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + G + GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 325 RFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384 Query: 333 KNFFETRVTEYQ-QGAELKWD 352 NFFE RVTEY+ G WD Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405 >gi|40556174|ref|NP_955259.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus] gi|40233999|gb|AAR83582.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus] Length = 323 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 146/315 (46%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++G W Y A + W EV + DL WK+ L +ER I L FFA S+ Sbjct: 16 IFPIQHGDIWRMYKQAVASFWTVEEVDLSYDLIDWKN---LKPEERRFISYILAFFAVSD 72 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + PE R + Q E +HS + +I + D E LF+ R Sbjct: 73 GIVNENLVEKFCQEVQIPEARCFYGFQIAIENIHSEMYSLLIDTYIDDNNEKKRLFSSMR 132 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + K+ WAL++ S+P + V + EG++F FA I Sbjct: 133 TMDCVRKKSEWALKWIND-SAP-------------YGERLVAFAAVEGIFFSGSFAAIFW 178 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + +L K Q + ++ A Sbjct: 179 LKKRGLMPGLTFSNELISRDEGLHCDFACLLFTN------YLSHKPSQDRVYEIIDSAVS 232 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E + +G+N+ S +Y++F+++R +G + ENPF +M E I L+ Sbjct: 233 VETEFLTEALSIDLIGMNSKSMIEYIKFVSDRLLVSLGFSKKYN-VENPFSFM-ENISLE 290 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV+ YQ+ Sbjct: 291 GKANFFEKRVSNYQK 305 >gi|167648664|ref|YP_001686327.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter sp. K31] gi|167351094|gb|ABZ73829.1| Ribonucleoside-diphosphate reductase [Caulobacter sp. K31] Length = 346 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/313 (26%), Positives = 144/313 (46%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA E + HWMP EVP+ +DL W K L D ER ++ + FF S+ Sbjct: 20 PFRYPWAHEFWKKQQQVHWMPEEVPLGEDLKDWAVK--LNDKERNLLTQIFRFFTQSDIE 77 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 VA+N + R E + L A E +H + ++ ++G+ E E F + + ++ Sbjct: 78 VADNYMERYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMQYQAM 136 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K ++ ++ + + + + L +F EG+ + FA +++ R N Sbjct: 137 RDKHDFMQKFG------------VETNADIARTLAMFGGFTEGLQLFASFAMLMNFPRFN 184 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH I + + E + T E ++E A+ Sbjct: 185 KMKGMGQIVSWSIRDESLHCEGIIKLYHAFNAETKCV-TPEVAADIVECCKSVVIMEDAF 243 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G + G+ +QY++FIA+ R Q+ L ++ ENP PW+ ++ + N Sbjct: 244 IDLAFEAGEIQGMTPHDIKQYIRFIADWRLRQLHLPEVYGIKENPLPWLQSLLSGVEHAN 303 Query: 335 FFETRVTEYQQGA 347 FFE R TEY + A Sbjct: 304 FFEARATEYSKAA 316 >gi|56707665|ref|YP_169561.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis SCHU S4] gi|110670136|ref|YP_666693.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis FSC198] gi|187931834|ref|YP_001891819.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. mediasiatica FSC147] gi|224456732|ref|ZP_03665205.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis MA00-2987] gi|254370173|ref|ZP_04986179.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874478|ref|ZP_05247188.1| nrdB, biofunctional protein, glutaredoxin 3 protein/ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|56604157|emb|CAG45165.1| Biofunctional protein, glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320469|emb|CAL08548.1| Biofunctional protein, glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis FSC198] gi|151568417|gb|EDN34071.1| hypothetical protein FTBG_01287 [Francisella tularensis subsp. tularensis FSC033] gi|187712743|gb|ACD31040.1| bifunctional protein: glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|254840477|gb|EET18913.1| nrdB, biofunctional protein, glutaredoxin 3 protein/ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|282158827|gb|ADA78218.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis NE061598] Length = 410 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK NG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213 +T K ++ + + P+ G L + VF EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 324 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + G + GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 325 RFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384 Query: 333 KNFFETRVTEYQ-QGAELKWD 352 NFFE RVTEY+ G WD Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405 >gi|254369307|ref|ZP_04985319.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp. holarctica FSC022] gi|157122257|gb|EDO66397.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp. holarctica FSC022] Length = 410 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK NG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213 +T K ++ + + P+ G L + VF EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 324 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + G + GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 325 RFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384 Query: 333 KNFFETRVTEYQ-QGAELKWD 352 NFFE RVTEY+ G WD Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405 >gi|256027986|ref|ZP_05441820.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp. D11] Length = 348 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 95/356 (26%), Positives = 167/356 (46%), Gaps = 37/356 (10%) Query: 16 RVNVDDKRMLNARSD---------------VNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +V VD K++ N D + L ++Y WA + Y + N W+P +V Sbjct: 2 KVVVDRKKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVD 61 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D +++ LT ER L F +S+ NNI I H++ PE L Q Sbjct: 62 LTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQ 117 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 F+EA+HS ++QYII S+ + +++ +R+ + + ++ + Q Sbjct: 118 TFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID------- 170 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + +D+ F + + Y++ E ++FY GF L NKMVG ++ + I RDE H+ Sbjct: 171 EQSDENFAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLF 229 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 ++ +IK + P+ ++ E +M A EIA+ + +G+ + + E Y ++ Sbjct: 230 RSIVKEIKNDFPNFFSAE---TVYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKW 286 Query: 299 IANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349 +AN R +GLEPLF + +NP+ + D + E NFFE VT Y + + Sbjct: 287 LANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 342 >gi|304439119|ref|ZP_07399038.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372478|gb|EFM26065.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus duerdenii ATCC BAA-1640] Length = 347 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/341 (25%), Positives = 164/341 (48%), Gaps = 15/341 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +++ + ++N + ++N +KY W + Y A NN W+P E+ + D+ +K L Sbjct: 16 IDLQKRTIINGNTTNLNDFNNIKYKWTSDWYRQAMNNFWIPEEINLSQDVLDYKI---LD 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + E+ + L F +S+ + + +++ E L Q+F+E++HS ++ YI+ Sbjct: 73 EAEKRAFDKILSFLIYLDSIQTAQLP-NLQAYITANEINLCLSIQSFQESIHSQSYSYIL 131 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 ++ E +Y+ + T L + + D + L + + Sbjct: 132 DTICSPEERTEILYQYINDKT------LLERNKYITDQYAGFLNDKTKGNLMHALIANYI 185 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K E P L+T+ Sbjct: 186 LEGIYFYSGFMFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSIILDLKKEQPELFTE 245 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 E ++ R +L EIA+ + GL + E Y++++ N R +G EPL++ Sbjct: 246 EKVEEYRALLKYGVEEEIAWGKYVIGDDIQGLTSKMVEDYIKYLGNLRATNLGFEPLYEG 305 Query: 316 TEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 + W+++ D+ K +FFE +VT Y + A ++ D Sbjct: 306 YDKEVESMKWVTQYADINLLKTDFFEAKVTAYSKSAIIEDD 346 >gi|329888543|ref|ZP_08267141.1| ribonucleotide reductase, small chain family protein [Brevundimonas diminuta ATCC 11568] gi|328847099|gb|EGF96661.1| ribonucleotide reductase, small chain family protein [Brevundimonas diminuta ATCC 11568] Length = 348 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/313 (26%), Positives = 143/313 (45%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP EVPM +D+ W + L D ER ++ + FF ++ Sbjct: 24 PFRYPWAFDMWKKQQQVHWMPEEVPMGEDVKDWAAN--LNDGERNLLTQIFRFFTQADIE 81 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L A E +H + ++ ++G+ E E F + E ++ Sbjct: 82 VQDNYMERYGRVFKPTEVKMMLAAFANMETIHIAAYALLLETIGMPESE-FGAFMEYEAM 140 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K ++ Q+ D+D + + L +F EG+ + FA +++ R + Sbjct: 141 KDKHDYMGQFG------------VDSDADICRTLAMFGGFSEGLQLFASFAMLMNFPRQS 188 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH I + + E + TK +E + Sbjct: 189 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETGAV-TKAVADDIVDCCKTVIEMEDKF 247 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G V G+ + Y++FIA+ R Q+ L ++ TENP PW+ ++ + N Sbjct: 248 IDLAFEMGPVNGMTPDDIKAYIRFIADWRLRQLHLPEVYGVTENPLPWLQALLSGVEHAN 307 Query: 335 FFETRVTEYQQGA 347 FFE R TEY + A Sbjct: 308 FFEARATEYSKAA 320 >gi|150005609|ref|YP_001300353.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides vulgatus ATCC 8482] gi|254884474|ref|ZP_05257184.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 4_3_47FAA] gi|294778581|ref|ZP_06744003.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides vulgatus PC510] gi|319640834|ref|ZP_07995547.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_1_40A] gi|149934033|gb|ABR40731.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides vulgatus ATCC 8482] gi|254837267|gb|EET17576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 4_3_47FAA] gi|294447530|gb|EFG16108.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides vulgatus PC510] gi|317387646|gb|EFV68512.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_1_40A] Length = 349 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 96/346 (27%), Positives = 158/346 (45%), Gaps = 19/346 (5%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D K Sbjct: 15 EGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYP 71 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L ER + L F +SL +NN+ I +++ E L QAF+E VHS ++ Sbjct: 72 HLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYS 130 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 Y++ S+ E +Y+ K + L T + + D L + Sbjct: 131 YMLDSICSPEKRNEILYQ------WKTDGHLLKRNTFIGNCYNEFQESQDGFTLMKTLIA 184 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E P L Sbjct: 185 NYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKEEPDL 244 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 +T + + M+ E EI + + GLN E Y+Q++ N R +G PL Sbjct: 245 FTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNRKMIEDYIQYLGNLRWSSLGFGPL 304 Query: 313 FKYTEN-----PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 Y EN W+S+ + K +FFE + T Y + L+ D Sbjct: 305 --YEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|292397811|ref|YP_003517877.1| RR2b [Lymantria xylina MNPV] gi|291065528|gb|ADD73846.1| RR2b [Lymantria xylina MNPV] Length = 338 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 156/343 (45%), Gaps = 31/343 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L+P GEK + + +L + P++Y W Y A + W EV + D Sbjct: 6 LAPAD-GEKPFDPQAEPLLRENPRRFVIFPIQYSDMWSMYKKAEASFWTVEEVDLSKDTR 64 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ L D+ER IK L FFA+S+ +V N+V + + E R + Q E V Sbjct: 65 DWER---LNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVVEARCFYGFQIAMENV 121 Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS + +I + E L N +P + KA WAL++ ++S T G + Sbjct: 122 HSEMYSTLIDTYVRSSEEKLRLLNAIETMPCVKEKAEWALRW---IASKEATFGER---- 174 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 175 ------LVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK 228 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR- 302 HL + + R ++ +A +E + E +P +GLN + QY++F+A+R Sbjct: 229 -------HLVQRPSAARVREIVTDAVAIEQRFLTEALPVRLLGLNCETMSQYIEFVADRL 281 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 IG + T NP +M+ +I L+ + NFFE +V EYQ+ Sbjct: 282 LVDLIGTKHY--NTANPLDFMT-LISLEGKTNFFEKKVGEYQK 321 >gi|227871657|ref|ZP_03990072.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268] gi|227842499|gb|EEJ52714.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268] Length = 347 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 90/351 (25%), Positives = 175/351 (49%), Gaps = 19/351 (5%) Query: 9 PIQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E ++V ++RM+N +++N ++Y W + Y A NN W+P E+ + D + Sbjct: 8 PLFNPEGDIDVRNRRMINFNTTNINDFNNMRYEWVSDWYRQAMNNFWVPEEINLNQDKSD 67 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + L++ ER + L F +SL + N+ I ++++ E L Q F+E +H Sbjct: 68 YPK---LSEAERRAYDKILSFLVYLDSLQSANLP-NISQYVTANEVNLCLSIQTFQECIH 123 Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 S ++ Y++ ++ + ++ ++ + + ++ L + +KD+ F Sbjct: 124 SQSYSYMLDTICNPTERNDILYQWKTDEHLLRRN----EFIGNLYNEFVEKQSKDS---F 176 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L+ + + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL F +++ ++ Sbjct: 177 LR-VCIANFILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWFFRNMLLEL 235 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K E P L+ + + M+ + EIA+ + GLN E Y++++ N R Sbjct: 236 KKEEPELFDEAHIAEITEMVKKGVEQEIAWGQYVIGDSIPGLNGKMVEDYIRYLGNLRYR 295 Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 +GL L++ Y + P W+S+ D K +FFE R T Y + ++ D Sbjct: 296 SLGLPNLYEGYEKEPESMKWVSQYADANMVKTDFFEARSTAYAKSTAIEDD 346 >gi|260497963|ref|ZP_05816079.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_33] gi|260196471|gb|EEW94002.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_33] Length = 344 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 88/320 (27%), Positives = 156/320 (48%), Gaps = 22/320 (6%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 ++Y WA + Y + N W+P +V + D +++ LT ER L F +S+ Sbjct: 34 VRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQ 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPS 154 NNI I H++ PE L Q F+EA+HS ++QYII S+ + +++ +R+ Sbjct: 91 TNNIP-NISEHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKV 149 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + ++ + Q + +D+ F + + Y++ E ++FY GF L Sbjct: 150 LFERNSFIAKIYQDFID-------EQSDENFAKVIIANYLL-ESLYFYNGFNFFYLLASR 201 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKMVG ++ + I RDE H+ ++ +IK + P+ ++ E +M A EIA Sbjct: 202 NKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDFPNFFSAE---TVYSMFKTAVEQEIA 258 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKE- 332 + + +G+ + + E Y +++AN R +GLEPLF + +NP+ + D + E Sbjct: 259 WTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEG 318 Query: 333 ---KNFFETRVTEYQQGAEL 349 NFFE VT Y + + Sbjct: 319 NVKSNFFEGTVTSYNMSSSI 338 >gi|56551339|ref|YP_162178.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas mobilis subsp. mobilis ZM4] gi|241760992|ref|ZP_04759081.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753042|ref|YP_003225935.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542913|gb|AAV89067.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis ZM4] gi|241374611|gb|EER64072.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552405|gb|ACV75351.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 345 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/313 (26%), Positives = 150/313 (47%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HW+P EVP+ +D W K L+D ER ++ + FF ++ Sbjct: 12 PFEYPWAFEFWQRQQQLHWLPEEVPLGEDCRDWAQK--LSDHERNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + R E + L + E VH + +++ ++G+ E E ++ + + + Sbjct: 70 VQDCYFDKYGRIFRPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQYKEM 128 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K ++ +F G+ DQ+ + L + EG+ + FA +++ R N Sbjct: 129 KDKHDYL---------ATFDVGS---DQDIARTLAMMGGFTEGLQLFASFAMLMNFPRFN 176 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH GI + + TK+ + + +E A+ Sbjct: 177 KMKGMGQIVSWSVRDESLHCE-GIIRLFHTFCQERQCLTKQVKDDILNICQRTVRIEDAF 235 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G V G+ ++Y+++IA+ R Q+GL P++ E+P PW++ +++ + N Sbjct: 236 IDLVFEMGPVEGMTPKEIKKYIRYIADWRLGQLGLSPIYMIEEHPLPWLTPLLNGVEHAN 295 Query: 335 FFETRVTEYQQGA 347 FFETR TEY + A Sbjct: 296 FFETRSTEYSKAA 308 >gi|15613065|ref|NP_241368.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus halodurans C-125] gi|14195134|sp|Q9KFH7|RIR2_BACHD RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|10173115|dbj|BAB04221.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus halodurans C-125] Length = 345 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 89/328 (27%), Positives = 163/328 (49%), Gaps = 19/328 (5%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +LN +S +V +++ WA+ Y + N W P E+ M D + + LT+ E+ Sbjct: 21 ILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPT---LTETEQEAF 77 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140 K+ +G A +S V + + +L++ + +F+E VH+ ++ Y+++SL Sbjct: 78 KKIIGLLAFLDS-VQTDYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKA 136 Query: 141 DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 + E+F ++ + + + + Y + + +P+ T FL+ + V+ V+ EG+ Sbjct: 137 TQDEIFEYWKHDDVLKERNEFIIDGYEKFVDNPTPKT--------FLESI-VYDVILEGL 187 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 FY+GFA +L R KMV + YI RDE LH+ ++ ++ +E P L T+E + Sbjct: 188 NFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKT 247 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTEN 318 +T L +A LE + + G+N E Y+ FIAN+R Q+G+E P + N Sbjct: 248 FVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGMEKPYPEIKHN 307 Query: 319 PFPWMSEVIDLKKEK-NFFETRVTEYQQ 345 P W+ D+ K +FFE + +Y + Sbjct: 308 PMKWIRAYEDVNSGKSDFFEQKSRQYAK 335 >gi|332184137|gb|AEE26391.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Francisella cf. novicida 3523] Length = 410 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 88/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK NG +T E+ I L F S+ Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213 +T K ++ + + P+ G L + VF EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMD-----ADPTTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + ++ +RDES+H+ + ENP++ +F+++ M +A LE Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELED 324 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + G + GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 325 KFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384 Query: 333 KNFFETRVTEYQ-QGAELKWD 352 NFFE RVTEY+ G WD Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405 >gi|223983469|ref|ZP_03633655.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM 12042] gi|223964641|gb|EEF68967.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM 12042] Length = 348 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 97/343 (28%), Positives = 163/343 (47%), Gaps = 19/343 (5%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V +RM+N + ++N LKYGW + Y A NN W+P E+ + DL K L Sbjct: 17 TDVRRRRMINGNTTNLNDFNTLKYGWVSDWYRQAMNNFWIPEEINLGQDL---KDYPKLE 73 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + + + L F +S+ N+ I ++ E L QAF+EAVHS ++ Y++ Sbjct: 74 PAVKTALDKTLSFLIFLDSIQTANLP-NIGEVITANEINLCLTIQAFQEAVHSQSYSYML 132 Query: 136 TSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 S + E+ ++E P + + ++ L + T + ++ L Y Sbjct: 133 DSFCSPDQRTEILYQWKEDPRLLKRN----EFIGGLYNEFIEQRTP---VQLMKTLIANY 185 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FY+GF +LGR M G ++ +YI RDE+ HL +I +++ E P L+ Sbjct: 186 IL-EGIYFYSGFMFFYNLGRMGLMPGSVQEIRYINRDENTHLWLFRSMILELRKEEPQLF 244 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T E +Q R ML + EI + + GLN Y++++ N R I LE L+ Sbjct: 245 TPEREQLYREMLKQGVEEEIEWGCAILGDEIPGLNKTMIRDYIRYLGNLRAKAIHLEILY 304 Query: 314 KYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 E W+S+ + K +FFE R + Y + + LK D Sbjct: 305 PGEEEEPASMKWVSQYANANLIKTDFFEARSSAYAKASALKDD 347 >gi|212693366|ref|ZP_03301494.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855] gi|237710423|ref|ZP_04540904.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 9_1_42FAA] gi|237726931|ref|ZP_04557412.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. D4] gi|212664010|gb|EEB24584.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855] gi|229433787|gb|EEO43864.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides dorei 5_1_36/D4] gi|229455145|gb|EEO60866.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 9_1_42FAA] Length = 349 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 96/346 (27%), Positives = 158/346 (45%), Gaps = 19/346 (5%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D K Sbjct: 15 EGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYP 71 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L ER + L F +SL +NN+ I +++ E L QAF+E VHS ++ Sbjct: 72 HLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYS 130 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 Y++ S+ E +Y+ K + L T + + D L + Sbjct: 131 YMLDSICSPEKRNEILYQ------WKTDEHLLKRNTFIGNCYNEFQESQDGFTLMKTLIA 184 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E P L Sbjct: 185 NYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKEEPDL 244 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 +T + + M+ E EI + + GLN E Y+Q++ N R +G PL Sbjct: 245 FTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNRKMIEDYIQYLGNLRWSSLGFGPL 304 Query: 313 FKYTEN-----PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 Y EN W+S+ + K +FFE + T Y + L+ D Sbjct: 305 --YEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|18640273|ref|NP_570429.1| CMLV039 [Camelpox virus] gi|18482949|gb|AAL73746.1|AF438165_36 ribonucleotide reductase small subunit [Camelpox virus M-96] gi|19717972|gb|AAG37497.1| CMP39L [Camelpox virus CMS] Length = 319 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 85/315 (26%), Positives = 143/315 (45%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D+ W N LT +E+ IK L FFA+S+ Sbjct: 14 IFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPNEKYFIKHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WA ++ D + + + EG++F FA I Sbjct: 131 TMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL ++ +++ +A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSEETVISIITDAVS 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N + Y++F+A+R ++G + ++ NPF +M E I L+ Sbjct: 230 IEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVI-NPFDFM-ENISLE 287 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV EYQ+ Sbjct: 288 GKTNFFEKRVGEYQK 302 >gi|289765931|ref|ZP_06525309.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D11] gi|289717486|gb|EFD81498.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D11] Length = 344 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 88/320 (27%), Positives = 156/320 (48%), Gaps = 22/320 (6%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 ++Y WA + Y + N W+P +V + D +++ LT ER L F +S+ Sbjct: 34 VRYQWANQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQ 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPS 154 NNI I H++ PE L Q F+EA+HS ++QYII S+ + +++ +R+ Sbjct: 91 TNNIP-NISDHVTAPEVNLLLAIQTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKV 149 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + ++ + Q + +D+ F + + Y++ E ++FY GF L Sbjct: 150 LFERNSFIAKIYQDFID-------EQSDENFAKVIIANYLL-ESLYFYNGFNFFYLLASR 201 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKMVG ++ + I RDE H+ ++ +IK + P+ ++ E +M A EIA Sbjct: 202 NKMVGTSDIIRLINRDELSHVVLFRSIVKEIKNDFPNFFSAE---TVYSMFKTAVEQEIA 258 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKE- 332 + + +G+ + + E Y +++AN R +GLEPLF + +NP+ + D + E Sbjct: 259 WTEHIIGNRVLGITSQTTEAYTKWLANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEG 318 Query: 333 ---KNFFETRVTEYQQGAEL 349 NFFE VT Y + + Sbjct: 319 NVKSNFFEGTVTSYNMSSSI 338 >gi|229816571|ref|ZP_04446870.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM 13280] gi|229807906|gb|EEP43709.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM 13280] Length = 352 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 94/340 (27%), Positives = 163/340 (47%), Gaps = 19/340 (5%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 ++V D+RM+ + ++N +KY W Y A NN W+P E+ + D+ K L+ Sbjct: 21 LDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINLTQDV---KDYPRLS 77 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + ER + L F +SL + N+ I +++ E L QAF+E+VHS ++ Y++ Sbjct: 78 EAERAAYDKILSFLVFLDSLQSANLP-NIAEYITANEVNLCLSIQAFQESVHSQSYSYML 136 Query: 136 TSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ E+ ++ + A+ + +DA + FL+ L Y Sbjct: 137 DTICDPAKRNEILYQWKTDKHLLARNTFIGDLYNEFQE------HRDA-RTFLRVLMANY 189 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FY+GF +L R KM G A++ +YI RDE+ HL +I +++ E P L+ Sbjct: 190 IL-EGVYFYSGFMFFYNLARMGKMPGSAQEIRYINRDENTHLWLFRSIILELQKEEPQLF 248 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + E R ML E EIA+ + GL E Y++++ N R +G L+ Sbjct: 249 SNENVTMLREMLEEGVRQEIAWGRYVLGDAIPGLTGDMVEGYIKYLGNLRWSSLGFGQLY 308 Query: 314 K-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 + Y P W+S+ + K +FFE + T Y + L Sbjct: 309 EGYRTEPADMAWVSQYSNANMVKTDFFEAKSTAYAKSTAL 348 >gi|154505112|ref|ZP_02041850.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149] gi|153794591|gb|EDN77011.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149] Length = 347 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 89/335 (26%), Positives = 159/335 (47%), Gaps = 19/335 (5%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N L+Y W Y A NN W+P E+ + D+ K LT++ER Sbjct: 21 RRMIGGNTTNLNDFNNLRYTWVNNWYRQAMNNFWIPEEINLSQDI---KDYPNLTENERT 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG- 139 + L F +S+ N+ I +++ E L Q F+E VHS ++ Y++ S+ Sbjct: 78 AYNKILSFLVFLDSIQTANLP-CIGEYITANEINLCLSIQTFQECVHSQSYSYMLDSICS 136 Query: 140 -LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 ++ ++ ++ + + T + + D L + + + EG Sbjct: 137 PVERNDILYQWKNDAHLLRR--------NTFIGDLYNEFQEKKDDFTLLKVMMANYILEG 188 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E P L+T E Sbjct: 189 IYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILEMKKELPELFTPEHI 248 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTE 317 + + ML E EIA+ H + GL +Y+Q++ N R +G +P++ T+ Sbjct: 249 EILKEMLKEGVRQEIAWGHYVIGNQIAGLTKEMITEYIQYLGNLRFTNLGFDPIYPDQTQ 308 Query: 318 NP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 P W+S+ + K +FFE + T Y + L Sbjct: 309 EPDSMRWVSQYSNANMVKTDFFEAKSTAYAKSTAL 343 >gi|222824493|ref|YP_002576067.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter lari RM2100] gi|222539714|gb|ACM64815.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter lari RM2100] Length = 340 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 86/331 (25%), Positives = 156/331 (47%), Gaps = 13/331 (3%) Query: 19 VDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++D+++ N + KY WA + + N W P EV D ++ LT Sbjct: 15 LNDRKVFNGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTVA 72 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ M S +S NN+ I +++ PE L RQA+EEA HS ++ ++ + Sbjct: 73 EKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEA 132 Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 + + ++ M + ++ K ++ + L+ G D ++ L V + E Sbjct: 133 ICENTDLIYEMEKHDETLREKNDFISSIYEELA------GEVDDNKLLLA--MVANQILE 184 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E L+ Sbjct: 185 GVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKERADLFNDTN 244 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 K M +A LEI + +G E+Y+ ++ ++R I L+ ++ + Sbjct: 245 VSKIYDMFKKAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLIAINLDKIYN-VK 303 Query: 318 NPFPWMSEVIDLKKEK-NFFETRVTEYQQGA 347 +P W+ + +K NFFE++VT Y +G+ Sbjct: 304 HPIKWVDDFSKFNDQKSNFFESKVTNYSKGS 334 >gi|294463759|gb|ADE77404.1| unknown [Picea sitchensis] Length = 289 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 86/293 (29%), Positives = 144/293 (49%), Gaps = 29/293 (9%) Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV + DL W + LT +E+ I L FFA+S+ +V N+ + + PE R + Sbjct: 3 EVDLSQDLYQWVN---LTKNEKHFISHVLAFFAASDGIVLENLAGRFLKDVQIPEARAFY 59 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +HS + ++ + D E LFN +P + KA WA+++ Q SS SF Sbjct: 60 GFQIAIENIHSEMYSLLLETYIRDSKEKARLFNAINTIPCVARKAEWAMRWIQ--SSGSF 117 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + V + EG++F F I L + M G+ + I RDE LH Sbjct: 118 A------------ERIVSFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLH 165 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 +F + + +K +K +++ + ++ +A +E + E + VG+NA Q Sbjct: 166 CDFACLLYSLLK-------SKLSEERVKAIVRDAVDIEREFVCEALSCDLVGMNATLMSQ 218 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 Y++FIA+R +G ++ + ENPF WM ++I L+ + NFFE RV +YQ+ + Sbjct: 219 YIKFIADRLLVALGHGKMY-HVENPFDWM-DLISLQGKTNFFERRVGDYQKAS 269 >gi|21492474|ref|NP_659593.1| Ribonucleotide reductase, small subunit [Sheeppox virus] Length = 321 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 144/315 (45%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A + W EV + DL+ WK L ++E+ IK L FFA+S+ Sbjct: 14 VFPILYKEIWVMYKKAVASFWTVDEVDLSKDLSDWKK---LNNEEQYFIKNILAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ Y + E R + Q E +HS + +I + E LFN Sbjct: 71 GIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISSTKEKEYLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + I K+ WA ++ + F + L F V EG++F FA I Sbjct: 131 TMDFIKKKSEWARKWIS------------NKKASFGERLIAFAAV-EGIFFSGSFAAIFW 177 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + +K + + ++ EA Sbjct: 178 LKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKYPPSN-------EIITIIIKEAVS 230 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +P +G+N QY++FIA+R ++G + +F + NPF +M E I L+ Sbjct: 231 IEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVF-MSINPFDFM-ENISLE 288 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE RV+EYQ+ Sbjct: 289 GKTNFFEKRVSEYQK 303 >gi|160937686|ref|ZP_02085046.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC BAA-613] gi|158439331|gb|EDP17083.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC BAA-613] Length = 347 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/348 (25%), Positives = 163/348 (46%), Gaps = 19/348 (5%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + + + +RM+ + ++N +KY WA Y A NN W+P E+ + DL Sbjct: 8 PLFNPQGDTDKNSRRMIGGNTTNLNDFNNMKYTWASSWYRQAMNNFWIPEEINLSADLKD 67 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +K+ LT ER + L F +S+ N+ I ++++ E L Q F+EAVH Sbjct: 68 YKN---LTAAERTAYDKILSFLVFLDSIQTANLP-CIAQYITANEVNLCLTIQGFQEAVH 123 Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 S ++ Y++ S+ ++ + ++E + + T + + D Sbjct: 124 SQSYSYMLDSICSPVERDRILYQWKEDEHLLRR--------NTFIGNLYNEFQEKKDDVT 175 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L + + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I ++ Sbjct: 176 LLRVIMANYILEGIYFYSGFMFFYNLGRGGKMPGSVQEIRYINRDENTHLWLFRSMIAEL 235 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 + E P L+T + R+ML E EI + + GL Y++++ N R Sbjct: 236 RKEEPQLFTPKMVDMLRSMLEEGVAQEIQWGCYVIGDDVPGLTREMVTDYIRYLGNLRWS 295 Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 +G L++ Y E P W+++ + K +FFE + T Y + A + Sbjct: 296 GLGFGTLYEGYDEEPQSMKWVNQYSNANMVKTDFFEAKSTAYAKSAAI 343 >gi|254303614|ref|ZP_04970972.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323806|gb|EDK89056.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 344 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/350 (27%), Positives = 168/350 (48%), Gaps = 29/350 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 HS ++QYII S+ + +++ +R+ + + ++ + Q + +D+ Sbjct: 120 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 172 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F + + Y++ E ++FY GF L NKMVG ++ + I RDE H+ ++ + Sbjct: 173 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKE 231 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK + P+ ++ E +M A EIA+ + +G+ + + E Y +++AN R Sbjct: 232 IKNDFPNFFSAE---TIYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERL 288 Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349 +GLEPLF + +NP+ + D + E NFFE VT Y + + Sbjct: 289 KSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 338 >gi|15639047|ref|NP_218493.1| ribonucleotide-diphosphate reductase subunit beta [Treponema pallidum subsp. pallidum str. Nichols] gi|189025287|ref|YP_001933059.1| ribonucleotide-diphosphate reductase subunit beta [Treponema pallidum subsp. pallidum SS14] gi|6093976|sp|O83092|RIR2_TREPA RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|3322311|gb|AAC65049.1| ribonucleoside-diphosphate reductase, subunit beta (nrdB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017862|gb|ACD70480.1| ribonucleoside-diphosphate reductase, subunit beta [Treponema pallidum subsp. pallidum SS14] gi|291059468|gb|ADD72203.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema pallidum subsp. pallidum str. Chicago] Length = 351 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/347 (25%), Positives = 167/347 (48%), Gaps = 23/347 (6%) Query: 11 QAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 +AG+ + + +RM+ + ++N +KY W + Y A NN W+P E+ M D+ ++ Sbjct: 16 EAGD--IELHKRRMVGGNTTNLNDFNNMKYPWVSKWYRQAMNNFWIPEEINMSSDVQDYR 73 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 + L+ E+ + L F +S+ N+ I ++++ E L QAF+EAVHS Sbjct: 74 N---LSAIEKTAYDKILSFLIFLDSIQTANLP-NIGQYITANEINLCLTIQAFQEAVHSQ 129 Query: 130 TFQYIITSLGLDE--GELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFL 186 ++ Y++ ++ E ++ +++ + A+ + Y + S K A + Sbjct: 130 SYSYMLDTICSPEERNDILYQWKDDEHLLARNKFIGNLYNEFQDDKSVLALLKVAIANY- 188 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V EG++FY+GF +LGR NKM G ++ +YI RDE+ HL +I +++ Sbjct: 189 --------VLEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQELQ 240 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P ++T + R M+ E EI + + GLN Y++++ N RC Sbjct: 241 KEEPQVFTARNVRLFRDMIREGCEQEIKWGDYVIGDQIPGLNRHMVADYIRYLGNLRCEN 300 Query: 307 IGLEPLF---KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 +G EPL+ + W+S+ + K +FFE + T Y + + + Sbjct: 301 LGFEPLYEGHRVEPESMSWVSQYSNANLIKTDFFEAKSTAYAKSSAM 347 >gi|265756566|ref|ZP_06090772.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 3_1_33FAA] gi|263233754|gb|EEZ19369.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 3_1_33FAA] Length = 349 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 96/346 (27%), Positives = 158/346 (45%), Gaps = 19/346 (5%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D K Sbjct: 15 EGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYP 71 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L ER + L F +SL +NN+ I +++ E L QAF+E VHS ++ Sbjct: 72 HLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYS 130 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 Y++ S+ E +Y+ K + L T + + D L + Sbjct: 131 YMLDSICSPEKRNEILYQ------WKTDEHLLKRNTFIGNCYNEFQESQDGFTLMKTLIA 184 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E P L Sbjct: 185 NYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKEEPDL 244 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 +T + + M+ E EI + + GLN E Y+Q++ N R +G PL Sbjct: 245 FTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNWKMIEDYIQYLGNLRWSSLGFGPL 304 Query: 313 FKYTEN-----PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 Y EN W+S+ + K +FFE + T Y + L+ D Sbjct: 305 --YEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|320527966|ref|ZP_08029132.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium moorei F0204] gi|320131592|gb|EFW24156.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium moorei F0204] Length = 349 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/349 (25%), Positives = 165/349 (47%), Gaps = 15/349 (4%) Query: 9 PIQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E ++V ++R++N +++N +KY W + Y A NN W+P E+ + D + Sbjct: 10 PLFNPEGDIDVRNRRLINFNTTNINDFNNMKYNWVSDWYRQAMNNFWVPEEINLNQDKSD 69 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + L+ E+ + L F +SL + N+ I ++++ E L Q F+E +H Sbjct: 70 YPR---LSLAEKTAYDKILSFLVYLDSLQSANLP-NISQYITANEVNLCLSIQTFQECIH 125 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y++ S+ E +Y+ K + L + D++ Sbjct: 126 SQSYSYMLDSICSPEQRNDILYQ------WKTDEHLLKRNEFIGELYNEFVAKQDKQSFL 179 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + + EG++FY+GF +L R KM G ++ +YI RDES HL +++ +++ Sbjct: 180 RVCIANFILEGVYFYSGFMFFYNLARNGKMPGSVQEIRYINRDESTHLWLFRNILVELQK 239 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P L+T E Q R M++ EIA+ H + GLN Y++++ N R + Sbjct: 240 EEPELFTPENIQMIREMMNTGVEQEIAWGHYVIGDEIPGLNKQMVTDYIKYLGNTRFATL 299 Query: 308 GLEPLF-KYTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 G L+ +Y E P W+ + D K +FFE R + Y + ++ D Sbjct: 300 GFGNLYEEYAEEPESMKWVKQYSDANMVKTDFFEARPSAYAKSGAIEDD 348 >gi|269865926|ref|XP_002652096.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063168|gb|EED41960.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 330 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/316 (29%), Positives = 145/316 (45%), Gaps = 31/316 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEVYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +HS + +I +L D+ E LFN Sbjct: 95 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA WA ++ S SF T V + EG++F FA I Sbjct: 155 NIPSIRKKALWAQKWIA--SDTSFDTRC------------VAFACVEGIFFSGSFAAIFW 200 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + H + ++ EA Sbjct: 201 LKKRGLMPGLTFSNELISRDEGLHTDFACLL---------HKYINNKCTVIEDIVREAVA 251 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E++P +G+N QY++F+A+R +G + ++ + NPF +M E I L+ Sbjct: 252 IEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQ 309 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE R YQ+G Sbjct: 310 GKTNFFERREANYQKG 325 >gi|313887688|ref|ZP_07821370.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846297|gb|EFR33676.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 346 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/344 (26%), Positives = 165/344 (47%), Gaps = 21/344 (6%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + +R++N + ++N LKY W + Y A NN W+P E+ + D+ ++ L Sbjct: 15 IETSKRRVINGNTTNLNDFNNLKYSWTSDWYRQAMNNFWIPEEINLSQDVKDYRE---LD 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + L F +SL I + +++ E L Q ++E++HS ++ YI+ Sbjct: 72 KAEKTAYDKILSFLIYLDSLQTAQIP-KLQSYVTANEINLCLSIQGYQESIHSQSYSYIL 130 Query: 136 TSLGLDEG--ELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 ++ E E+ Y++ + + + QY + + F++ L Sbjct: 131 DTICSPEEREEILYQYKDDEVLLKRNKFIGDQYQDFYENENLDN--------FMKALIAN 182 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 Y++ EG++FY+GF+ +LGR KM G + +YI RDE+ HL +I ++K E P + Sbjct: 183 YIL-EGIYFYSGFSFFYNLGRMGKMPGTVSEIRYINRDENTHLWLFRSIILEMKKEEPEI 241 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 +T E +K + ML + EIA+ + GLN E Y+ ++ N R +G L Sbjct: 242 FTDENIEKYKEMLKKGVEEEIAWGKYVIGDEIKGLNEKMIEDYIMYLGNLRSRNLGFGNL 301 Query: 313 F-KYTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 F + + P W+SE D + K +FFE R + Y + + ++ D Sbjct: 302 FDENIDEPESMKWVSEYSDPNQIKTDFFEARPSAYSKSSVIEDD 345 >gi|288554979|ref|YP_003426914.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus pseudofirmus OF4] gi|288546139|gb|ADC50022.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus pseudofirmus OF4] Length = 344 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/314 (26%), Positives = 156/314 (49%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +++ WA+ Y + N W P E+ M D K LT+ E+ K+ +G A +S V Sbjct: 34 VRFSWAYPLYKNMLANFWTPFEINMSHDT---KQFQNLTETEQEAFKKIIGLLAFLDS-V 89 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPS 154 + L + +L++ + +F+E VH+ ++ Y+++SL + E+F+ ++ P Sbjct: 90 QTDYSLKVADYLTDSSLVALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFDYWKNDPV 149 Query: 155 ITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + + + + Y + ++P+ T L V+ V+ EG+ FY+GFA +L R Sbjct: 150 LKERNEFIVDGYEEFANNPTPDT---------LARSIVYDVILEGVNFYSGFAFFYNLAR 200 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KMV + YI RDE LH+ +V ++ E+P L +E + + L A LE+ Sbjct: 201 HQKMVSTSTMINYINRDEQLHVYLFTNVFKELLEEHPELNNREMESFVKQSLTTAVELEL 260 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332 + + + + G+ + Y++FIAN+R Q+G + +F ++ N F W+ D+ Sbjct: 261 KWYNYIIGEQIEGVTSDEMGSYLKFIANKRAKQLGYDHIFPEHRTNVFKWIKAYEDVNAA 320 Query: 333 K-NFFETRVTEYQQ 345 K +FFE + +Y + Sbjct: 321 KSDFFEQKSRQYAK 334 >gi|122921307|pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (Pv086155) gi|122921308|pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (Pv086155) Length = 311 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/306 (26%), Positives = 145/306 (47%), Gaps = 28/306 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++L+ +D L P+ Y W+ Y A + W E+ + DL K L D+E+ Sbjct: 29 NEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDL---KDFEKLNDNEKH 85 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 86 FIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIK 145 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 DE E LF+ +P++ KA WA ++ +S + V E Sbjct: 146 DEKERMNLFHAIENIPAVKNKALWAAKWINDTNS--------------FAERIVANACVE 191 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G+ F F I + NK+ G+ + I RDE LH +F + + ++ + P Sbjct: 192 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP------- 244 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G +F + + Sbjct: 245 EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIF-HAK 303 Query: 318 NPFPWM 323 NPF WM Sbjct: 304 NPFNWM 309 >gi|225712968|gb|ACO12330.1| Ribonucleoside-diphosphate reductase small chain [Lepeophtheirus salmonis] Length = 335 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 29/315 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y A W EV + DL W L DE+ I L FFA+S+ Sbjct: 28 MFPIVYKDIWFMYKKALATFWTVEEVDLSKDLMDWAK---LNKDEKHFISNVLAFFAASD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + E R + Q E +HS + +I + D+ E LFN Sbjct: 85 GIVNENLLERFASEVQIAEARSFYGFQIMIENIHSEMYSLLIDTYIEDDKEKDKLFNSIL 144 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KA WAL++ TG D+ F L F V EG++F FA + Sbjct: 145 TIECVKKKAEWALRW---------ITG----DKPFATRLVAFAAV-EGIFFSGSFASLFW 190 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE H +F + + HL K + ++ E Sbjct: 191 LKKRGLMPGLTFSNELISRDEGSHTDFACLLYS-------HLENKLDPKYVLQIIKEGVE 243 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + +++P G +G+NA + Y++F+A+ + +E + +T+NPF +M I + Sbjct: 244 IEKEFVADSLPVGLIGMNAKMMKNYIEFVADNLLENLNIEKYY-HTKNPFNFMDN-ISMT 301 Query: 331 KEKNFFETRVTEYQQ 345 + NFF+ RV+EYQ+ Sbjct: 302 GKTNFFDKRVSEYQR 316 >gi|167756571|ref|ZP_02428698.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402] gi|237733862|ref|ZP_04564343.1| ribonucleotide-diphosphate reductase subunit beta [Mollicutes bacterium D7] gi|167702746|gb|EDS17325.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402] gi|229382943|gb|EEO33034.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus sp. D7] Length = 346 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 92/341 (26%), Positives = 158/341 (46%), Gaps = 15/341 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 ++V +RM+N + ++N +KY W + Y A NN W+P E+ + D+ ++ L+ Sbjct: 15 IDVRKRRMINGNTTNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLTQDIRDYRL---LS 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + ER + L F +SL N+ I +++ E L QAF+EAVHS ++ Y++ Sbjct: 72 EAERTAYDKILSFLVFLDSLQTANLP-NIGEYITANEINLCLTIQAFQEAVHSQSYSYML 130 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 S+ R+ K + L + + D L + + Sbjct: 131 DSICSPTK------RDEILYQWKFDEHLLKRNEFIGEQYNAFLEHKDSFHLMKTIMANYI 184 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GF +LGR KM G A++ +YI RDE+ HL ++I +++ E P L+T Sbjct: 185 LEGIYFYSGFMFFYNLGRMGKMSGSAQEIRYINRDENTHLWLFRNMIIELQKEEPTLFTP 244 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 E + R ML EIA+ + GL Y+ ++ N R + EPL++ Sbjct: 245 EKIEVYRNMLKRGVEEEIAWGQYVLGNRIEGLTMDMVSDYIHYLGNLRAFSLNFEPLYEG 304 Query: 316 TEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 E W+S + K +FFE + T Y + + ++ D Sbjct: 305 FETEPEAMKWVSIYSNANNIKTDFFEAKSTAYAKSSAIEDD 345 >gi|282174133|ref|YP_003358235.1| ORF96 [Anguillid herpesvirus 1] gi|281308976|gb|ADA57859.1| ORF96 [Anguillid herpesvirus 1] Length = 328 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/325 (27%), Positives = 150/325 (46%), Gaps = 26/325 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L+ ++ + P++ W Y +A +W EV + D+ W+ + L DER I Sbjct: 9 LLDPANNRDVTFPIREHAIWAMYKTAQAANWSAEEVDLAQDVTHWEKR--LNKDERHFIS 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+++ LV N+ + + E + Q E VH+ + +I +L D Sbjct: 67 HVLAFFAAADGLVNANLGQRFTQEVQYLEATYFYNFQMAIENVHAEMYSKLIATLIKDVK 126 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA WA ++T D + F + L F V EG++ Sbjct: 127 EQDRLFNAVERMPCIAKKAEWAKRWTH------------DTNASFGERLVAFAAV-EGIF 173 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F FA I L M G+ ++I RDE LH +F + H+ K ++ Sbjct: 174 FSGAFAAIFWLKPRGIMPGLIMSNEFISRDEGLHCDFACLLFKD------HILGKPGYER 227 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E + E +P +G+N Y++F+A+R +G P + +NPF Sbjct: 228 VSQIVTEAVEIEKEFLSEALPVRLLGINCEQMCSYIEFVADRLLAALGF-PKRYHVKNPF 286 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQ 345 +M E I ++ + NFFE V++Y++ Sbjct: 287 GFM-ESISMEGKTNFFEKNVSQYKK 310 >gi|68171256|ref|ZP_00544659.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str. Sapulpa] gi|67999338|gb|EAM85984.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str. Sapulpa] Length = 294 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/300 (26%), Positives = 152/300 (50%), Gaps = 25/300 (8%) Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 +P EVP+ DD+ WK+ L++ E+ ++ + FF ++ + NN + Y ++ P Sbjct: 1 LPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQAD-IEVNNCYMKHYSNIFKP-TE 56 Query: 115 QYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172 ++ AF E +H + Y++ ++G+ E E + + + + K ++ ++ + Sbjct: 57 VCMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEVMKKKYDYMQRFEEC---- 111 Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 K+ + + L VF EG+ + FA +L+ R KM G+ + + +RDE+ Sbjct: 112 -----RKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRFGKMKGMGQIIAWSVRDET 166 Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV-----GL 287 LH I + N EN +W +Q+ L+EA + ++ E + F GL Sbjct: 167 LHTESIIRLFNTFIQENYEIWDDSLKQE----LYEACRIIVSLEDEFINLAFACGDVEGL 222 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++ ++Y+++IANRR Q+ LEP++ +NP W+ E+++ + NFFE RVTEY + A Sbjct: 223 SSKEVKEYIRYIANRRLLQLNLEPIYDTNKNPLLWLDEILNGVEHTNFFENRVTEYARAA 282 >gi|167627842|ref|YP_001678342.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597843|gb|ABZ87841.1| Ribonucleoside-diphosphate reductase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 410 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK NG +T E+ I L F S+ Sbjct: 102 PFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213 +T K ++ + ++P+ G L + VF EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMD-----ANPNTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + ++ +RDES+H+ + ENP++ +F+++ M +A LE Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELED 324 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + G + GL A ++Y++ I +RR +Q+GL ++ +NP W+ +++ Sbjct: 325 KFIDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIYNIDKNPLTWLEWILNGADH 384 Query: 333 KNFFETRVTEYQ-QGAELKWD 352 NFFE RVTEY+ G WD Sbjct: 385 TNFFENRVTEYEVAGLTGNWD 405 >gi|9631087|ref|NP_047757.1| ribonucleotide reductase small subunit homolog [Lymantria dispar MNPV] gi|3822355|gb|AAC70306.1| ribonucleotide reductase small subunit homolog [Lymantria dispar MNPV] Length = 348 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 146/315 (46%), Gaps = 28/315 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W Y A + W EV + D + W+ L D+ER IK L FFA+S+ Sbjct: 42 IFPIQYPDMWRMYKKAEASFWTVEEVDLSKDTSDWER---LNDNERHFIKHVLAFFAASD 98 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E VHS + +I + E L N Sbjct: 99 GIVNENLVERFAQEVQVAEARCFYGFQIAMENVHSEMYSTLIDTYVRSSEEKLRLLNAIE 158 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA WAL++ G + A E L V + EG++F FA I Sbjct: 159 TMPCVKEKAEWALRW---------IAGREAAFGERL----VAFAAVEGVFFSGSFAAIFW 205 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL + + R ++ +A Sbjct: 206 LKKRGLMPGLTFSNELISRDEGLHCDFACLLFK-------HLVQRPSAARVREIVTDAVA 258 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E +P +GLN + QY++F+A+R ++ + T NP +M+ +I L+ Sbjct: 259 IEQRFLTEALPVRLLGLNCETMSQYIEFVADRLLLELVGAKHYN-TPNPLDFMN-LISLE 316 Query: 331 KEKNFFETRVTEYQQ 345 + NFFE +V EYQ+ Sbjct: 317 GKTNFFEKKVGEYQK 331 >gi|241668401|ref|ZP_04755979.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876934|ref|ZP_05249644.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842955|gb|EET21369.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 410 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK NG +T E+ I L F S+ Sbjct: 102 PFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213 +T K ++ + ++P+ G L + VF EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMD-----ANPNTRRGLG---------LCLAKTVFNEGVALFASFAMLLNFQR 264 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 KM G+ + ++ +RDES+H+ + ENP++ +F+++ M +A LE Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELED 324 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + G + GL A ++Y++ I +RR +Q+GL ++ +NP W+ +++ Sbjct: 325 KFIDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIYNIDKNPLTWLEWILNGADH 384 Query: 333 KNFFETRVTEYQ-QGAELKWD 352 NFFE RVTEY+ G WD Sbjct: 385 TNFFENRVTEYEVAGLTGNWD 405 >gi|323343338|ref|ZP_08083565.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella oralis ATCC 33269] gi|323095157|gb|EFZ37731.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella oralis ATCC 33269] Length = 349 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 155/338 (45%), Gaps = 19/338 (5%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N ++Y WA + Y A NN W+P E+ + D K L ER Sbjct: 23 RRMIGGNTTNLNDFNNMRYPWASDWYRQAMNNFWIPEEINLAQDT---KDYPRLDKAERA 79 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +SL +NN+ I +++ E L QAF+E VHS ++ Y++ ++ Sbjct: 80 AYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYSYMLDTICS 138 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E +Y+ K + L T + D+ L V + EG++ Sbjct: 139 PEERNDILYQ------WKTDEHLLRRNTFIGDCYNEFHDKRDKFSLMKTCVANFILEGIY 192 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF +L R KM G A++ +YI RDE+ HL +++ ++K E P ++T E + Sbjct: 193 FYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNILQELKKEEPKMFTPEKVKV 252 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN-- 318 M+ E EIA+ + GLN Y+ ++ N R H +G L Y EN Sbjct: 253 YEEMMREGVRQEIAWGQYVIGDEVPGLNTKMVSDYIHYLGNLRWHSLGFGYL--YDENIQ 310 Query: 319 ---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 W+S+ + K +FFE + T Y + L+ D Sbjct: 311 EPENMKWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|269863618|ref|XP_002651286.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064807|gb|EED42770.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 332 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 92/316 (29%), Positives = 145/316 (45%), Gaps = 31/316 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +HS + +I +L D+ E LFN Sbjct: 95 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA WA ++ S SF T V + EG++F FA I Sbjct: 155 NIPSIRKKALWAQKWIA--SDTSFDTRC------------VAFACVEGIFFSGSFAAIFW 200 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + H + ++ EA Sbjct: 201 LKKRGLMPGLTFSNELISRDEGLHTDFACLL---------HKYINNKCTVIEDIVREAVA 251 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E++P +G+N QY++F+A+R +G + ++ + NPF +M E I L+ Sbjct: 252 IEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQ 309 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE R YQ+G Sbjct: 310 GKTNFFERREANYQKG 325 >gi|253567022|ref|ZP_04844473.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_2_5] gi|265764336|ref|ZP_06092904.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 2_1_16] gi|15290503|gb|AAK92210.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides fragilis 638R] gi|251944146|gb|EES84655.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_2_5] gi|263256944|gb|EEZ28290.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 2_1_16] gi|301163665|emb|CBW23219.1| putative ribonucleoside-diphosphate reductase beta chain [Bacteroides fragilis 638R] Length = 349 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 95/357 (26%), Positives = 162/357 (45%), Gaps = 19/357 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 + N +P E R+ ++M+ + ++N ++Y W + Y A NN W+P E+ Sbjct: 6 LKKNALFNPEGDTETRL----RKMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEI 61 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D K LT ER + L F +SL +NN+ + +++ E L Sbjct: 62 NLTQDT---KDYPHLTPAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHI 117 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E VHS ++ Y++ S+ E +Y+ K + L T + + Sbjct: 118 QAFQECVHSQSYSYMLDSICSPEERNDILYQ------WKTDEHLLRRNTFIGNCYNEFQE 171 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + D L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 172 NRDGFALMKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 231 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 ++I ++K E P L+T + + M+ E EIA+ + GLN Y+ F+ Sbjct: 232 NIILELKKEEPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFL 291 Query: 300 ANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 N R +G PL+ + W+S+ + K +FFE + T Y + L+ D Sbjct: 292 GNLRWSSLGYTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|299144102|ref|ZP_07037182.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518587|gb|EFI42326.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 346 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 88/343 (25%), Positives = 168/343 (48%), Gaps = 19/343 (5%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 V + ++M+N + ++N +KY W + Y + NN W+P E+ M D+ +++ L Sbjct: 15 VELTKRKMINGNTTNLNDFNNIKYTWVSDMYRTMMNNFWIPEEINMNQDIKDYRN---LD 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + L F +S+ N+ I + + E L QA++EA+HS ++ YI+ Sbjct: 72 FHEKKAYDKILSFLIFLDSIQTANLP-NISDYTTANEVNLILTIQAYQEAIHSQSYSYIL 130 Query: 136 TSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ E E+ +R+ + + ++ + + TK+ +++ + Y Sbjct: 131 DTIASPEERTEILYQWRDDEHLLNRN----KFIGNIYNDFVENHTKET---YMKTVMGNY 183 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++I ++K E L+ Sbjct: 184 IL-EGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRNIIQELKKEEVELF 242 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T+E + + ML E EI + + G+ A + Y++++ N R IG LF Sbjct: 243 TEERINEYKCMLMEGVRQEIEWGQYVIGDNIQGITAQMVKDYIEYLGNLRSRSIGFGNLF 302 Query: 314 KYT---ENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 N W+SE + + K +FFE +V+ Y + + + D Sbjct: 303 DRNIEEPNSMKWVSEYSNPNEIKTDFFEGKVSAYSKSSVFEDD 345 >gi|294784669|ref|ZP_06749957.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_27] gi|294486383|gb|EFG33745.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_27] Length = 344 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/350 (26%), Positives = 167/350 (47%), Gaps = 29/350 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 HS ++QYII S+ + +++ +R+ + + ++ + Q + +D+ Sbjct: 120 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 172 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F + + Y++ E ++FY GF L NKMVG ++ + I RDE H+ ++ + Sbjct: 173 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKE 231 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK + P+ ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 232 IKNDFPNFFSAE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERL 288 Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349 +GLEPLF + +NP+ + D + E NFFE VT Y + + Sbjct: 289 KSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 338 >gi|19703451|ref|NP_603013.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713529|gb|AAL94312.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 348 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/350 (26%), Positives = 167/350 (47%), Gaps = 29/350 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 8 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 67 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 68 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 123 Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 HS ++QYII S+ + +++ +R+ + + ++ + Q + +D+ Sbjct: 124 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F + + Y++ E ++FY GF L NKMVG ++ + I RDE H+ ++ + Sbjct: 177 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKE 235 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK + P+ ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 236 IKNDFPNFFSAE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERL 292 Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349 +GLEPLF + +NP+ + D + E NFFE VT Y + + Sbjct: 293 KSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 342 >gi|197103810|ref|YP_002129187.1| ribonucleoside-diphosphate reductase, beta subunit [Phenylobacterium zucineum HLK1] gi|196477230|gb|ACG76758.1| ribonucleoside-diphosphate reductase, beta subunit [Phenylobacterium zucineum HLK1] Length = 350 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/313 (26%), Positives = 142/313 (45%), Gaps = 17/313 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HWMP E+P+ +DL W SK L D ER ++ + FF S+ Sbjct: 24 PFRYPWAYDYWKKQQQVHWMPEEIPLGEDLKDWASK--LNDRERNLLTQIFRFFTQSDVE 81 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L + E +H + ++ ++G+ + E F + + ++ Sbjct: 82 VNDNYMERYARVFKPTEVKMMLAAFSNMETIHIAAYALLLETIGMPDAE-FTAFLDYQAM 140 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K + Y Q+ D + + L +F EG+ + FA +++ R N Sbjct: 141 RDKHD----YMQSFGV--------DTHADICRTLAMFGGFTEGLQLFASFAMLMNFPRHN 188 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH I + + E + T+ LE + Sbjct: 189 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETGAV-TQAVADDIVDCCKTVVGLEDKF 247 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 G V G+ +QY++FIA+ R Q+ L ++ ENP PW+ ++ + N Sbjct: 248 IDLAFEAGEVQGMTPDDIKQYIRFIADWRLKQLHLPQVYGIKENPLPWLQSMLSGVEHAN 307 Query: 335 FFETRVTEYQQGA 347 FFE R TEY + A Sbjct: 308 FFEARATEYSKAA 320 >gi|296329016|ref|ZP_06871523.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153909|gb|EFG94720.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 348 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/350 (26%), Positives = 167/350 (47%), Gaps = 29/350 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 8 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 67 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 68 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 123 Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 HS ++QYII S+ + +++ +R+ + + ++ + Q + +D+ Sbjct: 124 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F + + Y++ E ++FY GF L NKMVG ++ + I RDE H+ ++ + Sbjct: 177 FAKIIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKE 235 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK + P+ ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 236 IKNDFPNFFSAE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERL 292 Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349 +GLEPLF + +NP+ + D + E NFFE VT Y + + Sbjct: 293 KSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 342 >gi|237743586|ref|ZP_04574067.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 7_1] gi|229432617|gb|EEO42829.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 7_1] Length = 344 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/350 (26%), Positives = 167/350 (47%), Gaps = 29/350 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 HS ++QYII S+ + +++ +R+ + + ++ + Q + +D+ Sbjct: 120 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 172 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F + + Y++ E ++FY GF L NKMVG ++ + I RDE H+ ++ + Sbjct: 173 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKE 231 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK + P+ ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 232 IKNDFPNFFSAE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERL 288 Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349 +GLEPLF + +NP+ + D + E NFFE VT Y + + Sbjct: 289 KSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 338 >gi|60682187|ref|YP_212331.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis NCTC 9343] gi|60493621|emb|CAH08410.1| putative ribonucleoside-diphosphate reductase beta chain [Bacteroides fragilis NCTC 9343] Length = 349 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 90/328 (27%), Positives = 151/328 (46%), Gaps = 14/328 (4%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++N ++Y W + Y A NN W+P E+ + D K LT ER + L F Sbjct: 31 TNLNDFNNMRYQWVSDWYRQAMNNFWIPEEINLTQDT---KDYPHLTPAERTAYDKILSF 87 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 +SL +NN+ + +++ E L QAF+E VHS ++ Y++ S+ E + Sbjct: 88 LVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAFQECVHSQSYSYMLDSICSPEERNDIL 146 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 Y+ K + L T + ++ D L + + EG++FY+GF Sbjct: 147 YQ------WKTDEHLLRRNTFIGNCYNEFQENRDGFALMKTLIANYILEGIYFYSGFMFF 200 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 +L R KM G A++ +YI RDE+ HL ++I ++K E P L+T + + M+ E Sbjct: 201 YNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKEEPELFTPDKVKVYEEMMREG 260 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSE 325 EIA+ + GLN Y+ F+ N R +G PL+ + W+S+ Sbjct: 261 VKQEIAWGQYVIGDQIQGLNRQMISDYIHFLGNLRWSSLGYTPLYEDNRKEPESMHWVSQ 320 Query: 326 VIDLKKEK-NFFETRVTEYQQGAELKWD 352 + K +FFE + T Y + L+ D Sbjct: 321 YSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|160915703|ref|ZP_02077911.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991] gi|158432179|gb|EDP10468.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991] Length = 353 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 165/355 (46%), Gaps = 19/355 (5%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A N P+ ++V ++M+N + ++N +KY WA + Y A NN W+P E+ Sbjct: 7 AMNLQRKPLFNEHGDIDVHLRKMINGNTTNLNDFNHMKYTWASDWYRQAMNNFWIPEEIN 66 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D+ K L+ E+ + L F +S+ N+ I +++ E L Q Sbjct: 67 LNQDV---KDYRKLSKAEKDAYDKTLSFLIFLDSIQTANLP-NIGEYITANEVNLCLTIQ 122 Query: 121 AFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 AF+EAVHS ++ Y++ S+ + + +++ P + A+ + + Sbjct: 123 AFQEAVHSQSYSYMLDSICSPQERNAILYQWKDDPHLLARNKFI--------GDLYNDFM 174 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + D E L + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL Sbjct: 175 EHRDGEHLIKTLIANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLF 234 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 ++ ++K E P L+T E + + ML E+ +A + + GL Y+ + Sbjct: 235 RSILLELKKEEPQLFTPEHIEIYKGMLKHGVEEEVKWAEYVLGERMEGLTMEMVADYIHY 294 Query: 299 IANRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 + N R + +G L+ Y + P W+S + K +FFE + T Y + + L Sbjct: 295 LGNLRSNALGFGSLYDGYEKEPASMEWVSMYSNANIIKTDFFEAKSTAYAKSSAL 349 >gi|219126374|ref|XP_002183434.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405190|gb|EEC45134.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 296 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 28/305 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W E+ + DL W + L+ +ER + L FFA+S+ +V N+ Sbjct: 2 YKKAEASFWTAEEIDLAGDLQDW---DKLSSNERHFVSHVLAFFAASDGIVNENLAGNFA 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + E R + Q E +HS T+ +I + D E L + VP + KA+WA Sbjct: 59 TEIQSAEARCFYGFQIAVENIHSETYSLLIDTYVRDAAEKDHLLHAIETVPCVQKKASWA 118 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 LQ+ DA+ + V + EG++F F I L + M G+ Sbjct: 119 LQWC-------------DANHASFAERCVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLCF 165 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I RDE LH +F + ++++ + P E ++ +A +E + + +P Sbjct: 166 SNELISRDEGLHCDFACLLYSKLQNQLPVARIVE-------IITDAVTIEQEFVQDALPV 218 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 +G+N+ +Y++F A+R +G +K NPF WM E+I L+ + NFFE RV E Sbjct: 219 ELIGMNSTLMCRYIEFCADRLLVALGCPKHYKAV-NPFDWM-EMISLQGKTNFFEKRVGE 276 Query: 343 YQQGA 347 Y + Sbjct: 277 YAKSG 281 >gi|237738722|ref|ZP_04569203.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 2_1_31] gi|229423825|gb|EEO38872.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 2_1_31] Length = 344 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 166/350 (47%), Gaps = 29/350 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 HS ++QYII S+ + +++ +R+ + + ++ + Q + +D+ Sbjct: 120 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 172 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F + + Y++ E ++FY GF L NKMVG ++ + I RDE H+ ++ + Sbjct: 173 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKE 231 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK + P ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 232 IKNDYPEFFSAE---TIYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTKWLANERL 288 Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349 +GLEPL+ + +NP+ + D + E NFFE VT Y + + Sbjct: 289 KSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 338 >gi|258648774|ref|ZP_05736243.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella tannerae ATCC 51259] gi|260851104|gb|EEX70973.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella tannerae ATCC 51259] Length = 350 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 91/334 (27%), Positives = 158/334 (47%), Gaps = 17/334 (5%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KRM+N + ++N +KY W + Y A NN W+P E+ + DL K + L ER Sbjct: 24 KRMINGNTTNLNDFNNMKYKWVSDWYRQAMNNFWIPEEINLGQDL---KDYSKLLPAERT 80 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +S+ N+ + +++ E L Q F+EAVHS ++ Y++ ++ Sbjct: 81 AYDKILSFLIFLDSIQTANLP-NVSEYITASEVNLCLNIQTFQEAVHSQSYSYMLDTICS 139 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ-EFLQDLFVFYVVFEGM 199 E R+ K + L + D +F++ L Y++ EG+ Sbjct: 140 PEE------RDAILFQWKNDPILLNRNKFIGDLYNAFMNDRSTFQFMKVLVANYIL-EGI 192 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 +FY+GF +LGR KM G A++ +YI RDE+ HL ++ ++K E P ++T + Sbjct: 193 YFYSGFMFFYNLGRNGKMPGSAQEIRYINRDENTHLWLFRSILLELKKEAPEMFTPDKVD 252 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTEN 318 R M+ + EI + + GL + Y++++ N R +G +PL+ Y + Sbjct: 253 VYRQMIAQGVEEEIKWGEYVLGDKIEGLTSEMIRDYIKYLGNLRTTSLGFDPLYDGYDKE 312 Query: 319 P--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 P W+S+ + K +FFE R T Y + + L Sbjct: 313 PPSMSWVSQYSNANMIKTDFFEARSTAYAKSSAL 346 >gi|213402763|ref|XP_002172154.1| ribonucleoside-diphosphate reductase small chain [Schizosaccharomyces japonicus yFS275] gi|212000201|gb|EEB05861.1| ribonucleoside-diphosphate reductase small chain [Schizosaccharomyces japonicus yFS275] Length = 392 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 97/340 (28%), Positives = 159/340 (46%), Gaps = 28/340 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 SP G+K + D+ +L + P++Y W+ Y A + W E+ + DL Sbjct: 55 SPYYLGKKE-DEKDEVVLTPNPRRFVMFPIEYHDIWQFYKKAEASFWTAEEIDLSKDLHD 113 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W +K L DER I L +FA+S+ +V N++ + E R Q E +H Sbjct: 114 WDNK--LNKDERYFISTVLAYFAASDGIVNENLLSRFSSEVQIAEARCVYGFQIMIENIH 171 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S T+ ++ + D E F+ + SI AKA WAL++ + D + Sbjct: 172 SETYSLLLDTYIRDPYEKQRHFDAILTMGSIKAKAKWALRWIE------------DPESI 219 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + L F V EG++F FA I L + M G+ + I RDE +H +F + + Sbjct: 220 YAVRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGVHTDFACLMFSH 278 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 +K H K+ ++ ++ EA +E Y + +P +G+N QY++F+A+R Sbjct: 279 LK----HRPGKKVVER---IIIEAVNIEKEYFTDALPVYLLGMNCDLMCQYIEFVADRLL 331 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 +G E + T NPF +M E I L + NFFE +V++YQ Sbjct: 332 LSLGNEKYYNVT-NPFDFM-ENISLAGKTNFFEKKVSDYQ 369 >gi|38683666|gb|AAR26843.1| FirrV-1-A19 [Feldmannia irregularis virus a] Length = 342 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/322 (25%), Positives = 143/322 (44%), Gaps = 28/322 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +NQ ++ + Y W E+ + +D+A W + ++DE+ I L FFA Sbjct: 32 LNQKTEFEFADVYALYKKEIACFWTVEEIDLNEDVACW---DKCSEDEQRFIGHILAFFA 88 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 S + +V N+ + + P+ R + Q E++H T+ +I + D + M R Sbjct: 89 SLDQIVMENVSVNFGDEIKIPQIRSHFAMQNAIESIHGETYALLIQTYIKDPEKQVTMLR 148 Query: 151 ---EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E+P IT KA W T D + L + V + EG+ F F Sbjct: 149 SIQEMPIITKKAQW-------------VTAWMDPEVASLAERLVAFTCVEGVQFSGAFCA 195 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 I L + + G+ I RDE LH + + N +K P + + + Sbjct: 196 IYWLKKQGRFRGLCFANSLIARDEGLHAEGSVMIYNHLKHRLPVAVVHD-------IFTD 248 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A LE + E++P +G+NA + Y++++++ ++G LF T+NPF WM+ +I Sbjct: 249 AVALEKEFIRESLPVSLIGINADTMSSYIEYVSDFWIQRLGYPKLFG-TKNPFEWMT-MI 306 Query: 328 DLKKEKNFFETRVTEYQQGAEL 349 ++ + NFFE RV EY + + Sbjct: 307 GMEGKSNFFEGRVAEYAKAGSM 328 >gi|291461082|ref|ZP_06026838.2| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium periodonticum ATCC 33693] gi|291379059|gb|EFE86577.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium periodonticum ATCC 33693] Length = 348 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 166/350 (47%), Gaps = 29/350 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 8 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 67 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 68 DYEN---LTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQEAI 123 Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 HS ++QYII S+ + +++ +R+ + + ++ + Q + +D+ Sbjct: 124 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F + + Y++ E ++FY GF L NKMVG ++ + I RDE H+ ++ + Sbjct: 177 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKE 235 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK + P ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 236 IKNDYPEFFSAE---TIYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTKWLANERL 292 Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349 +GLEPL+ + +NP+ + D + E NFFE VT Y + + Sbjct: 293 KSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 342 >gi|302386033|ref|YP_003821855.1| ribonucleotide reductase [Clostridium saccharolyticum WM1] gi|302196661|gb|ADL04232.1| ribonucleotide reductase [Clostridium saccharolyticum WM1] Length = 368 Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 89/348 (25%), Positives = 165/348 (47%), Gaps = 19/348 (5%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + V +RM+N + ++N +KY W + Y A NN W+P E+ + D Sbjct: 29 PLFHPDGETEVRKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLSRDR-- 86 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L+ ER + L F +S+ N+ A+ +++ E L Q F+EAVH Sbjct: 87 -KDYPLLSPQERRAYDKILSFLVFLDSIQTANLP-ALGEYVTANEINLCLSIQTFQEAVH 144 Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 S ++ Y++ ++ + ++ ++ P + A+ T + KD Sbjct: 145 SQSYSYMLDTICEPQTRNDVLYQWKSDPRLLAR--------NTFIGDLYNEFQKDKSPYA 196 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 V + EG++FY+GF +LGR +KM G +++ +YI RDE+ HL ++I ++ Sbjct: 197 FMKTVVANFILEGVYFYSGFMFFYNLGRNHKMTGSSQEIRYINRDENTHLWLFRNIILEL 256 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 + E P L+++E + RTM+ E EIA+ + GL Y+ ++ N RC Sbjct: 257 EKEEPKLFSRERIEVYRTMIKEGCEQEIAWGCYAIGDEVPGLTKEMITDYIMYLGNLRCA 316 Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 +G +++ + + P W+++ + K +FFE + T Y + + L Sbjct: 317 SLGWGRIYEGHDKEPESMSWVNQFSNANLIKTDFFEAKSTAYAKSSAL 364 >gi|237678830|emb|CAQ57557.1| NrdB protein [Bradyrhizobium elkanii] Length = 360 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 50/339 (14%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y WA+E + HWM EVP+ DL W S +TD ER ++ + FF S+ V Sbjct: 36 RYAWAYEFWKRQQQTHWMGEEVPLGADLKDWASDR-VTDSERALLTQIFRFFTQSDIEVG 94 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 +N L Y + P Q ++ AF E VH + ++ +LG+ + E F +R + Sbjct: 95 DNY-LKRYIPIFQPLTVQMMM-AAFTNMETVHIDAYALLLKTLGMPKTE-FEAFRGYSEM 151 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 AKA++ ++ D + + L +F EGM + FA +L+ R N Sbjct: 152 RAKADYMHEFGV------------DTVADVARTLAMFGAFTEGMALFASFAMLLNFPRHN 199 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH GI I+ H W +E +R++ + ++++A Sbjct: 200 KMNGMGQIVSWSVRDESLHCE-GI-------IKLFHEWNRETGAVTRSVRDD--IVDVAK 249 Query: 276 AHETMPKGFV----------GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-------- 317 + + FV G+ Y++++A+ R Q+ + P+F + E Sbjct: 250 TMVKLEENFVDLAFGLGKIEGMRPEQIHTYVRYVADWRLTQLRIAPVFGFFEAKEGGFTQ 309 Query: 318 ---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 352 +P PW+ E+++ + NFFE R TEY + A WD Sbjct: 310 LKAHPLPWLVEILNGVEHANFFEQRATEYSKAASRGSWD 348 >gi|288800286|ref|ZP_06405744.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288332499|gb|EFC70979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 347 Score = 119 bits (298), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 92/357 (25%), Positives = 165/357 (46%), Gaps = 19/357 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 + N +P+ + R+ +RM+ + ++N ++Y W + Y A NN W+P E+ Sbjct: 4 LKRNALFNPMGDTDLRL----RRMIGGNTTNLNDFNNMRYQWVSDWYRQAMNNFWIPEEI 59 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D K L ER + L F +SL + N+ ++ +++ E L Sbjct: 60 NLTQDT---KDYPKLDKAERTAYDKILSFLVFLDSLQSTNLP-SLTEYVTANEVNLCLHI 115 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E VHS ++ Y++ ++ E +Y+ K + L T + + Sbjct: 116 QAFQECVHSQSYSYMLDTICSPEERNDILYQ------WKTDEHLLKRNTFIGDLYNEFHE 169 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 170 KRDRYTLVKTCIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 229 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 ++I ++K E P L+T + M+ E EIA+ + GLNA + Y++++ Sbjct: 230 NIIQELKKEEPDLFTPDKVAVYEAMMREGVEQEIAWGQYVIGNDIQGLNAQMVDDYIRYL 289 Query: 300 ANRRCHQIGLEPLFKYTENP---FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 N R H +G + L++ W+S+ + K +FFE + T Y + L+ D Sbjct: 290 GNLRWHSLGFDYLYEDNRTEPENMRWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 346 >gi|294782021|ref|ZP_06747353.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 1_1_41FAA] gi|294481832|gb|EFG29601.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 1_1_41FAA] Length = 344 Score = 119 bits (298), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 166/350 (47%), Gaps = 29/350 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 HS ++QYII S+ + +++ +R+ + + ++ + Q + +D+ Sbjct: 120 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 172 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F + + Y++ E ++FY GF L NKMVG ++ + I RDE H+ ++ + Sbjct: 173 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKE 231 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK + P ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 232 IKNDYPEFFSAE---TIYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEVYTKWLANERL 288 Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349 +GLEPL+ + +NP+ + D + E NFFE VT Y + + Sbjct: 289 KSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 338 >gi|53713986|ref|YP_099978.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis YCH46] gi|52216851|dbj|BAD49444.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides fragilis YCH46] Length = 349 Score = 119 bits (298), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 94/357 (26%), Positives = 161/357 (45%), Gaps = 19/357 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 + N +P E R+ ++M+ + ++N ++Y W + Y NN W+P E+ Sbjct: 6 LKKNALFNPEGDTETRL----RKMIGGNTTNLNDFNNMRYKWVSDWYRQGMNNFWIPEEI 61 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D K LT ER + L F +SL +NN+ + +++ E L Sbjct: 62 NLTQDT---KDYPHLTPAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHI 117 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E VHS ++ Y++ S+ E +Y+ K + L T + + Sbjct: 118 QAFQECVHSQSYSYMLDSICSPEERNDILYQ------WKTDEHLLRRNTFIGNCYNEFQE 171 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + D L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 172 NRDGFALMKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 231 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 ++I ++K E P L+T + + M+ E EIA+ + GLN Y+ F+ Sbjct: 232 NIILELKKEEPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFL 291 Query: 300 ANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 N R +G PL+ + W+S+ + K +FFE + T Y + L+ D Sbjct: 292 GNLRWSSLGYTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|329847182|ref|ZP_08262210.1| ribonucleotide reductase, small chain family protein [Asticcacaulis biprosthecum C19] gi|328842245|gb|EGF91814.1| ribonucleotide reductase, small chain family protein [Asticcacaulis biprosthecum C19] Length = 352 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 85/314 (27%), Positives = 143/314 (45%), Gaps = 18/314 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + HW+P EVP+ +D W SK L+D ER ++ + FF S+ Sbjct: 23 PFRYPWAFEYWRKQQQVHWIPEEVPLGEDCKDWASK--LSDSERNLLTQIFRFFTQSDIE 80 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +N + R E + L A E +H + ++ ++G+ E E F + + ++ Sbjct: 81 VQDNYLERYGRVFKPTEIKMMLSAFANMETIHIAAYALLLETIGMPESE-FGAFMDYEAM 139 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K ++ T D + + L+ L +F EG+ + FA +++ R N Sbjct: 140 RDKHDF------------MGTFGVDTEADVLRTLAMFGGFTEGLQLFASFAMLMNFPRFN 187 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH I + + E L TK Q +E + Sbjct: 188 KMKGMGQIVSWSVRDESLHCEGIIKLYHAFAKETKAL-TKSVQDDIIDCCKTVVTMEDKF 246 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEK 333 G V G+ + Y+++IA+ R Q+ L ++ ENP PW+ ++ + Sbjct: 247 IDLAFEMGPVQGMTPDDIKAYIRYIADWRLRQLNLPEVYGGVKENPLPWLQVLLSGVEHA 306 Query: 334 NFFETRVTEYQQGA 347 NFFE R TEY + A Sbjct: 307 NFFEARATEYSKAA 320 >gi|237742881|ref|ZP_04573362.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 4_1_13] gi|229430529|gb|EEO40741.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 4_1_13] Length = 344 Score = 119 bits (297), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 167/350 (47%), Gaps = 29/350 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 HS ++QYII S+ + +++ +R+ + + ++ + Q + +D+ Sbjct: 120 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 172 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F + + Y++ E ++FY GF L NKMVG ++ + I RDE H+ ++ + Sbjct: 173 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKE 231 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK + P+ ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 232 IKNDFPNFFSAE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERL 288 Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349 +GLEPL+ + +NP+ + D + E NFFE VT Y + + Sbjct: 289 KSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 338 >gi|239628850|ref|ZP_04671881.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518996|gb|EEQ58862.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 347 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/342 (26%), Positives = 160/342 (46%), Gaps = 29/342 (8%) Query: 20 DDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + +RM+ + ++N +KY WA Y A NN W+P E+ + D+ K L+ E Sbjct: 19 NSRRMIGGNTTNLNDFNNMKYTWASAWYRQAMNNFWIPEEINLSTDV---KDYRNLSAAE 75 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R + L F +S+ N+ I ++++ E L Q F+EAVHS ++ Y++ S+ Sbjct: 76 REAFDKILSFLVFLDSIQTANLP-CIGQYITANEVNLCLTIQGFQEAVHSQSYSYMLDSI 134 Query: 139 G--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV-- 194 ++ + ++E + L +F + QE D+ + V Sbjct: 135 CSPVERDRILYQWKEDGHL-------------LKRNTFIGNLYNEFQERKDDITLLRVMM 181 Query: 195 ---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I ++K E P Sbjct: 182 ANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFRSMIGELKKEEPG 241 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L+T + + ML E EI + + GL Y++++ N R +G EP Sbjct: 242 LFTPDNVKMLEDMLREGVSQEIEWGCYVIGDEVPGLTKDMVSSYIKYLGNLRWTGLGFEP 301 Query: 312 LFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 L++ Y + P W+++ + K +FFE + T Y + A + Sbjct: 302 LYEGYGKEPESMAWVNQYSNANMVKTDFFEAKSTAYAKSAAI 343 >gi|153814165|ref|ZP_01966833.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756] gi|317499963|ref|ZP_07958199.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087814|ref|ZP_08336739.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 3_1_46FAA] gi|145848561|gb|EDK25479.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756] gi|316898680|gb|EFV20715.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium 8_1_57FAA] gi|330409509|gb|EGG88950.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 3_1_46FAA] Length = 353 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 159/346 (45%), Gaps = 15/346 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + +V +RM+ + ++N LKY WA E Y A NN W+P E+ + D+ Sbjct: 14 PLFNPDGDTDVLKRRMIGGNTTNLNDYNNLKYTWASEWYRQAMNNFWIPEEINLSQDI-- 71 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L+ ER + L F +S+ N+ + +++ E L Q F+E VH Sbjct: 72 -KDYPNLSPAERKAYDKILSFLVFLDSIQTANLP-CVGEYITANEVNLCLNIQTFQECVH 129 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y++ ++ + + +Y+ K + L T + D L Sbjct: 130 SQSYSYMLDTICSPDERMDILYQ------WKTDEHLLKRNTFIGECYNEFQVKKDARTLV 183 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + V EG++F++GF +L R KM G A++ +YI RDE+ HL ++I +++ Sbjct: 184 KVMMANFVLEGIYFFSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIIIELRK 243 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E+P L+ + + +L EA EI +A + GLN Y++++ N R + Sbjct: 244 EHPELFDDHMVSEMKELLMEAVRQEIEWACYVIGNEVPGLNEKMITDYIRYLGNLRWKSL 303 Query: 308 GLEPLFKYTEN---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 G P++ E W+S+ + K +FFE R T Y + L Sbjct: 304 GYAPIYPGCEREPETMKWVSQYSNANMVKTDFFEARSTAYAKSTAL 349 >gi|331083185|ref|ZP_08332301.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 6_1_63FAA] gi|330404574|gb|EGG84114.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 6_1_63FAA] Length = 347 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/338 (27%), Positives = 158/338 (46%), Gaps = 15/338 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V +RM+ + ++N ++YGW + Y A NN W+P E+ + D K L Sbjct: 16 TDVRFRRMIGGNTTNLNDFNNMRYGWVKDWYRQAMNNFWIPEEINLSQDR---KDYGELL 72 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER + L F +S+ + N+ I +++ E L Q F+E VHS ++ Y++ Sbjct: 73 GKERQAYDKILSFLVFLDSIQSANLP-CIGEYITANEINLCLSIQTFQECVHSQSYSYML 131 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 ++ E +Y+ K + L T + D L + + + Sbjct: 132 DTICSPEKRNEILYQ------WKTDERLLKRNTFIGELYNEFQMKKDSFTLLKVMMANYI 185 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I Q+K E P L+TK Sbjct: 186 LEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILQLKEEEPELFTK 245 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-K 314 E Q + ML E EIA+ H + G++ +Y++++ N R +G + ++ Sbjct: 246 ENIQALKEMLMEGVEQEIAWGHYVLGDDIPGISKEMITEYIKYLGNLRFTGLGFDVVYPG 305 Query: 315 YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 Y + P W+S + K +FFE + T Y + L Sbjct: 306 YEKEPESMKWVSYYSNANMVKTDFFEAKSTAYAKSTAL 343 >gi|255008714|ref|ZP_05280840.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis 3_1_12] gi|313146449|ref|ZP_07808642.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis 3_1_12] gi|313135216|gb|EFR52576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis 3_1_12] Length = 349 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 91/330 (27%), Positives = 149/330 (45%), Gaps = 18/330 (5%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++N + Y W + Y A NN W+P E+ + D K L ER + L F Sbjct: 31 TNLNDFNNMHYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYPHLDKAERTAYDKILSF 87 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 +SL +NN+ I +++ E L QAF+E VHS ++ Y++ S+ E + Sbjct: 88 LVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYSYMLDSICSPEERNDIL 146 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 Y+ K + L T + + D L + + EG++FY+GF Sbjct: 147 YQ------WKTDEHLLKRNTFIGNCYNEFQESQDSFTLMKTLIANYILEGIYFYSGFMFF 200 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 +L R KM G A++ +YI RDE+ HL ++I ++K E P L+T + + M+ E Sbjct: 201 YNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKEEPELFTSDRVKVYEAMMREG 260 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN-----PFPWM 323 EI + + GLN E Y+ ++ N R +G PL Y +N W+ Sbjct: 261 VKQEIEWGQYVIGDEIQGLNKKMIEDYIHYLGNLRWTSLGFTPL--YEDNLKEPESMRWV 318 Query: 324 SEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 S+ + K +FFE + T Y + L+ D Sbjct: 319 SQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|303237757|ref|ZP_07324316.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella disiens FB035-09AN] gi|302482043|gb|EFL45079.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella disiens FB035-09AN] Length = 349 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 15/333 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N +KY W + Y A NN W+P E+ + D+ K L ER Sbjct: 23 RRMIGGNTTNLNDFNNMKYVWVSDWYRQAMNNFWIPEEINLAQDI---KDYPNLPQAERT 79 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +SL +NN+ I +++ E L Q F+E +HS ++ Y++ ++ Sbjct: 80 AYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQECIHSQSYSYMLDTICS 138 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E +Y+ K + L T + + D+ L + + EG++ Sbjct: 139 PEERNDILYQ------WKTDEHLLKRNTFIGDCYNEFQEKRDKFALMKACMANFILEGIY 192 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E P L+T E Sbjct: 193 FYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIVELKQEQPELFTPERIAV 252 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN-- 318 M+ E EIA+ + GL Y+ ++ N R +G L+++ +N Sbjct: 253 YEEMMREGVRQEIAWGQYVIGDKVQGLTQQMVADYIHYLGNLRWRSLGFGNLYEHNQNEP 312 Query: 319 -PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 W+++ + K K +FFE + T Y + L Sbjct: 313 DDMQWVAQYSNANKVKTDFFEAKSTAYAKSTAL 345 >gi|297736972|emb|CBI26173.3| unnamed protein product [Vitis vinifera] Length = 312 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/291 (28%), Positives = 133/291 (45%), Gaps = 29/291 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + D+ W+S L++ E+ I L FFA+S+ +V N+ Sbjct: 2 YKKAEASFWTAEEVDLSHDVQQWES---LSNSEKHFISHVLAFFAASDGIVLENLAARFL 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + PE R + Q E +HS + ++ + D E LFN + + KA WA Sbjct: 59 HDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIESISCVAGKAKWA 118 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L + Q+ F + L F V EG++F F I L + M G+ Sbjct: 119 LDWIQS-------------STLFAERLIAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTF 164 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I RDE LH +F + + ++ + P W QK ++HEA +E + E +P Sbjct: 165 SNELISRDEGLHCDFACLLYSLLQKQLP--W-----QKVHHIVHEAVEIETQFVCEALPC 217 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 +G+NA QY++F+A+R +G E + ENPF WM E I L+ + Sbjct: 218 ALIGMNATLMSQYIKFVADRLLVALGYERKYN-VENPFDWM-EFISLQCSR 266 >gi|303389600|ref|XP_003073032.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon intestinalis ATCC 50506] gi|303302176|gb|ADM11672.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon intestinalis ATCC 50506] Length = 326 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/327 (26%), Positives = 156/327 (47%), Gaps = 31/327 (9%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L+ + + L P+++ W Y A ++ W EV + D+ WK L E+ I Sbjct: 10 LLDPKEERFVLFPIQHEDVWRMYKKAESSFWTVEEVLLDKDIEDWKK---LNPKEKHFIS 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+V + E + + Q E +HS + +I + D G Sbjct: 67 NVLAFFAASDGIVNLNLVERFSSEVKMLEAKLFYGFQIAIENIHSEMYSLLIDTYVRD-G 125 Query: 144 E----LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 E LFN + +PS+ KA+WA+++ + D + +F L F V EG+ Sbjct: 126 EQKKFLFNAVKTIPSVKDKADWAIKWIE------------DKNSDFATRLVAFACV-EGI 172 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 +F FA I L + M G+ + I RDE LH F + + + K+ + Sbjct: 173 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLHRR--------YLKQKCK 224 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319 + + ++ +A +E + E++P +G+N +Y++F+A+ + E ++ +T NP Sbjct: 225 RVKEVVMDAVEVEKRFLSESLPVDLIGMNCQLMCKYIEFVADTLLENLEEEKIY-HTPNP 283 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQG 346 F +M E I L + NFF+ R ++YQ+ Sbjct: 284 FDFM-ENISLVGKTNFFDKRESQYQKA 309 >gi|301097698|ref|XP_002897943.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] gi|262106388|gb|EEY64440.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] Length = 360 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 78/314 (24%), Positives = 146/314 (46%), Gaps = 35/314 (11%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++ W+ Y A + W E+ + DL W LTD+ER IK L FFA+S+ Sbjct: 66 LFPIQEHDVWQMYKKAEASFWTAEELDLVHDLNDWAK---LTDNERHFIKHVLAFFAASD 122 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +V N+ + + PE R + Q E +HS + +I + D E ++ R + Sbjct: 123 GIVNENLAMNFSNEVQIPEARCFYGFQIAIENIHSEVYSLLIDTYIKDAVEKDHLLRAIE 182 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 +I K +++ L + EG++F F + L + Sbjct: 183 TIPC------------------VQKKHSNERLLA-----FAAVEGIFFSGSFCSVFWLKK 219 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 M G++ + I RDE +H +F + +++ + P + + ++ +A +E Sbjct: 220 RGLMPGLSFSNEMISRDEGMHTDFACLMYSKLVNKLP-------ESRVHEIIRDAVAIEH 272 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + +++P +G+N+ QY++F+A+R + +G+ ++ +NPF WM ++I L+ + Sbjct: 273 EFVCDSLPVELIGMNSALMCQYIEFVADRLLYSLGVSKIYN-VKNPFDWM-DMISLQGKT 330 Query: 334 NFFETRVTEYQQGA 347 NFFE RV EY + Sbjct: 331 NFFEKRVGEYSKAG 344 >gi|256846215|ref|ZP_05551673.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_36A2] gi|256719774|gb|EEU33329.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_36A2] Length = 344 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 166/350 (47%), Gaps = 29/350 (8%) Query: 14 EKRVNVDDKRMLNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +K N + LNAR +++ L ++ WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRCQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 HS ++QYII S+ + +++ +R+ + + ++ + Q + +D+ Sbjct: 120 HSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID-------EQSDEN 172 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F + + Y++ E ++FY GF L NKMVG ++ + I RDE H+ ++ + Sbjct: 173 FAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKE 231 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK + P+ ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 232 IKNDFPNFFSAE---TIYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERL 288 Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL 349 +GLEPLF + +NP+ + D + E NFFE VT Y + + Sbjct: 289 KSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSI 338 >gi|260589755|ref|ZP_05855668.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia hansenii DSM 20583] gi|260539995|gb|EEX20564.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia hansenii DSM 20583] Length = 359 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 15/338 (4%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V +RM+ + ++N ++YGW Y A NN W+P E+ + D K L Sbjct: 28 TDVRFRRMIGGNTTNLNDFNNMRYGWVKGWYRQAMNNFWIPEEINLSQDR---KDYGELL 84 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER + L F +S+ + N+ I +++ E L Q F+E VHS ++ Y++ Sbjct: 85 GKERQAYDKILSFLVFLDSIQSANLP-CIGEYITANEINLCLSIQTFQECVHSQSYSYML 143 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 ++ E +Y+ K + L T + D L + + + Sbjct: 144 DTICSPEKRNEILYQ------WKTDERLLKRNTFIGELYNEFQMKKDSFTLLKVMMANYI 197 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I Q+K E P L+TK Sbjct: 198 LEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILQLKEEEPELFTK 257 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-K 314 E Q + ML E EIA+ H + G++ +Y++++ N R +G + ++ Sbjct: 258 ENIQALKEMLMEGVEQEIAWGHYVLGDDIPGISKEMITEYIKYLGNLRFTGLGFDVVYPG 317 Query: 315 YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 Y + P W+S + K +FFE + T Y + L Sbjct: 318 YEKEPESMKWVSYYSNANMVKTDFFEAKSTAYAKSTAL 355 >gi|317130866|ref|YP_004097148.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522] gi|315475814|gb|ADU32417.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522] Length = 345 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 83/332 (25%), Positives = 165/332 (49%), Gaps = 19/332 (5%) Query: 23 RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 R++N S +V +++ WA+ Y + N W P E+ M +D+ K + L ER Sbjct: 20 RIINGESSNVLNWDDVRFKWAYPLYKNMLANFWTPFEINMGNDV---KQYDKLEPKEREA 76 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 + +G A +S + + + + R+L++ + +F+E VH+ ++ Y+++SL Sbjct: 77 FDKIIGLLAFLDS-IQTDYSMHVARYLTDSSLSALMTVLSFQEVVHNQSYSYVLSSLTTK 135 Query: 142 --EGELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E+F ++ + + ++ A Y +S+P+ T FL + V+ ++ EG Sbjct: 136 AKQDEIFEYWKHDKVLRERNDFIAEGYEAFVSNPTPET--------FLHSI-VYDIILEG 186 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + FY+GF+ +L R KMV + YI RDE H+ ++ ++ E P L +++ Sbjct: 187 LNFYSGFSFFYNLARNQKMVSTSTMINYINRDEQHHVYLFANIFKELMHEYPELNSEKTH 246 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTE 317 + + + LEI +A + G++ E Y++F+AN+R +++G+E P Y Sbjct: 247 RFVQETFKKGAELEINWAKYIIGDQMEGIDIGDLEAYIKFMANKRVNELGVERPFEGYRN 306 Query: 318 NPFPWMSEVIDLKKEK-NFFETRVTEYQQGAE 348 NP W+ D+ K +FFE + +Y + ++ Sbjct: 307 NPMRWIKIYEDVNSGKTDFFEQKSRQYTKVSD 338 >gi|317060491|ref|ZP_07924976.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D12] gi|313686167|gb|EFS23002.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D12] Length = 344 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 89/324 (27%), Positives = 153/324 (47%), Gaps = 23/324 (7%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +K+ WA + Y + N W+P +V + D +++ LT ER L F +S+ Sbjct: 34 VKFSWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQ 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPS 154 NN+ I +++ PE L Q F+EA+HS ++QYII S+ E +++ +R+ Sbjct: 91 TNNLP-NISDYITAPEVNLLLSIQTFQEAIHSQSYQYIIESILPKESRDLIYDKWRDDKV 149 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + + Q Q + +DQ F + L Y++ E ++FY GF L Sbjct: 150 LFERNRFIAQIYQDFIEET-------SDQNFAKVLIANYLL-ESLYFYNGFNFFYLLASR 201 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKMVG ++ + I RDE H+ +I +IK +++ R M A EI Sbjct: 202 NKMVGTSDVIRLINRDELSHVVLFQKIIREIK---AENHNFFEEEEIRAMFRTAVEQEIL 258 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE- 332 + + +G+ + E Y +++AN R IGL P++ ++T+NP+ + D + + Sbjct: 259 WTEHIIGNRILGITTETTEAYTKWLANERLRTIGLAPMYEEFTKNPYKHLERFADTEGDG 318 Query: 333 ---KNFFETRVTEYQQGAELK-WD 352 NFFE VT Y + + WD Sbjct: 319 NVKSNFFEGTVTSYNMSSSIDGWD 342 >gi|291239432|ref|XP_002739627.1| PREDICTED: hCG23833-like [Saccoglossus kowalevskii] Length = 309 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 90/311 (28%), Positives = 147/311 (47%), Gaps = 39/311 (12%) Query: 43 WEKYLSACNNHWMPTEVPM-QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 W+K++ W E+ + DL W N LT DER K LGFFAS+ +V++N+ Sbjct: 18 WKKHVRC---FWTKDEINITSSDLREW---NDLTPDERQFFKCILGFFASTNIIVSDNLA 71 Query: 102 LAIYRHLSNP----ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV---PS 154 L R L++P E R + Q E +HS T+ ++T+ +E E + + P Sbjct: 72 L---RFLADPNISREARCFYSFQIAMENIHSETYIELLTAYVPEEKERNELLYSIISWPC 128 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K+ WA+++ D + + L F VV EG+ F + FA I + ++ Sbjct: 129 LNVKSRWAVKWMN------------DEFATYAERLVAFAVV-EGIMFSSSFAGIYWIKQS 175 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 + G+ + ++I RDE LH F + +IK P K R ++ E +E Sbjct: 176 GLLAGLTQANEFISRDEGLHCTFACTMYGKIKPRLP-------DTKVRKIVLEGCEVEKL 228 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 + + K +G+N+ E Y+ F+ + +G E F NPFP+M I ++ + N Sbjct: 229 FVKHALRKPLLGMNSHLMETYVNFVTDNLLTDLGYEKEFG-VNNPFPFMDN-ISMQGKTN 286 Query: 335 FFETRVTEYQQ 345 FFE RVTEY + Sbjct: 287 FFERRVTEYTR 297 >gi|289677031|ref|ZP_06497921.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae FF5] Length = 151 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 49/83 (59%), Positives = 62/83 (74%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGF 88 ALWK+ GLTDDER ++ RNLGF Sbjct: 129 ALWKNPEGLTDDERRIVMRNLGF 151 >gi|257462865|ref|ZP_05627271.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp. D12] Length = 348 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 89/324 (27%), Positives = 153/324 (47%), Gaps = 23/324 (7%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +K+ WA + Y + N W+P +V + D +++ LT ER L F +S+ Sbjct: 38 VKFSWATQLYRTMMANFWIPEKVDLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQ 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPS 154 NN+ I +++ PE L Q F+EA+HS ++QYII S+ E +++ +R+ Sbjct: 95 TNNLP-NISDYITAPEVNLLLSIQTFQEAIHSQSYQYIIESILPKESRDLIYDKWRDDKV 153 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + + Q Q + +DQ F + L Y++ E ++FY GF L Sbjct: 154 LFERNRFIAQIYQDFIEET-------SDQNFAKVLIANYLL-ESLYFYNGFNFFYLLASR 205 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKMVG ++ + I RDE H+ +I +IK +++ R M A EI Sbjct: 206 NKMVGTSDVIRLINRDELSHVVLFQKIIREIK---AENHNFFEEEEIRAMFRTAVEQEIL 262 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE- 332 + + +G+ + E Y +++AN R IGL P++ ++T+NP+ + D + + Sbjct: 263 WTEHIIGNRILGITTETTEAYTKWLANERLRTIGLAPMYEEFTKNPYKHLERFADTEGDG 322 Query: 333 ---KNFFETRVTEYQQGAELK-WD 352 NFFE VT Y + + WD Sbjct: 323 NVKSNFFEGTVTSYNMSSSIDGWD 346 >gi|309775830|ref|ZP_07670824.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308916368|gb|EFP62114.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 347 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 88/336 (26%), Positives = 155/336 (46%), Gaps = 15/336 (4%) Query: 19 VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V +RM+N + ++N +KY W + Y A NN W+P E+ + D+ K L + Sbjct: 18 VGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV---KDYRRLHEA 74 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ + L F +S+ N+ + +++ E L QAF+EAVHS ++ Y++ S Sbjct: 75 EKTAYDKTLSFLIFLDSIQTANLP-NVGEYVTANEVNLCLTIQAFQEAVHSQSYSYMLDS 133 Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 + + +Y+ K + L + + D L + + E Sbjct: 134 ICSPQERNDILYQ------WKDDERLLNRNKFIGDLYNDFQEHKDGLHLMKTMMANYILE 187 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++FY+GF +LGR KM G ++ +YI RDE+ HL +I +++ E PHL+T+E Sbjct: 188 GIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILELQKEEPHLFTEEL 247 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 Q+ + ML EI + + GL Y+ ++ N R + +G L++ E Sbjct: 248 IQEYKDMLRHGVEEEIRWGEYVIGNNIEGLTMEMVSDYIHYLGNLRSNSLGFGSLYEGFE 307 Query: 318 N---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 + W+S + K +FFE R + Y + + L Sbjct: 308 SEPKSMEWVSMYANANLIKTDFFEARSSAYAKSSAL 343 >gi|260591988|ref|ZP_05857446.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella veroralis F0319] gi|260536272|gb|EEX18889.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella veroralis F0319] Length = 348 Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 94/355 (26%), Positives = 164/355 (46%), Gaps = 21/355 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 + NT +P +G+ V++ +RM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 5 LKRNTLFNP--SGD--VDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQDF---KDYPRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E +HS ++ Y++ ++ E +Y+ K + L + + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQ------WKTDEHLLNRNKFIGDCYNEFHE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +I ++K E P ++T+E + M+ E EIA+ + GLN+ Y++++ Sbjct: 231 SIILELKKEEPDMFTEEKVKVYEDMMREGVRQEIAWGQYVIGNDVQGLNSQMVSDYIRYL 290 Query: 300 ANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 N R +G L+ K EN W+ + + K +FFE R T Y + L Sbjct: 291 GNLRWSGLGFGFLYPDNQKEPEN-MKWVGQYSNANMVKTDFFEARSTAYAKSTAL 344 >gi|260912588|ref|ZP_05919119.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] gi|260633300|gb|EEX51459.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] Length = 348 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 90/336 (26%), Positives = 156/336 (46%), Gaps = 15/336 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N ++Y WA + Y A NN W+P E+ + D K L ER Sbjct: 22 RRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEINLTQDT---KDYPLLPPAERK 78 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +SL + N+ ++ ++ E L QAF+E VHS ++ Y++ ++ Sbjct: 79 AYDKILSFLVFLDSLQSANLP-SLTEFITANEVNLCLHIQAFQECVHSQSYSYMLDTICS 137 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E +Y+ K + L T + + D+ L + + EG++ Sbjct: 138 PEERNDILYQ------WKTDEHLLRRNTFIGDCYNEFYANNDKASLMKTLIANYILEGIY 191 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF +L R KM G A++ +YI RDE+ HL ++I+++K E P +T E + Sbjct: 192 FYSGFMFFYNLARNGKMSGSAQEIRYINRDENTHLWLFRNIIHEMKKEEPEYFTPEKVKL 251 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 M+ E EIA+ + GLN Y++++ N R +G LF+ E P Sbjct: 252 YEEMMREGVRQEIAWGQYVIGDEVQGLNGQMVNDYIRYLGNMRWRSLGFGNLFEDNIEEP 311 Query: 320 --FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 W+S+ + K +FFE + T Y + ++ D Sbjct: 312 ENMRWVSQYANANMVKTDFFEAKSTAYAKSTAIEDD 347 >gi|224539244|ref|ZP_03679783.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus DSM 14838] gi|224519126|gb|EEF88231.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus DSM 14838] Length = 349 Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 87/328 (26%), Positives = 147/328 (44%), Gaps = 14/328 (4%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++N ++Y W + Y A NN W+P E+ + D K L + ER + L F Sbjct: 31 TNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYPLLDEAERTAYDKILSF 87 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 +SL +NN+ I +++ E L QAF+E VHS ++ Y++ ++ E + Sbjct: 88 LVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHSQSYSYMLDTICSPEKRNDIL 146 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 Y+ K + L T + + D L + + EG++FY+GF Sbjct: 147 YQ------WKTDEHLLKRNTFIGNCYNEFQESQDGFTLMKTLIANYILEGIYFYSGFMFF 200 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 +L R KM G A++ +YI RDE+ HL +I ++K E P L+T + Q M+ E Sbjct: 201 YNLSRNGKMSGSAQEIRYINRDENTHLWLFRSIILELKKEEPELFTPDKVQIYENMMREG 260 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 EI + + GLN Y+ ++ N R +G PL+++ M V+ Sbjct: 261 VKQEIEWGQYVIGDNIQGLNRQMIADYIHYLGNLRWSSLGNPPLYEHNRKEPESMHWVLQ 320 Query: 329 LKK----EKNFFETRVTEYQQGAELKWD 352 + +FFE + T Y + L+ D Sbjct: 321 YSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|319902178|ref|YP_004161906.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108] gi|319417209|gb|ADV44320.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108] Length = 347 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/336 (26%), Positives = 155/336 (46%), Gaps = 15/336 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N ++Y W + Y A NN W+P E+ + D K L ER+ Sbjct: 21 RRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT---KDYPLLDKAERV 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +SL +NN+ + +++ E L QAF+E VHS ++ Y++ S+ Sbjct: 78 AYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAFQECVHSQSYSYMLDSICS 136 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E +Y+ K + L T + + + L + + EG++ Sbjct: 137 PEERNDILYQ------WKTDEHLLKRNTFIGNCYNEFQESQNGFALVKTLIANYILEGIY 190 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E P L+ + + Sbjct: 191 FYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIILELKKEEPELFVPDKVKV 250 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN-- 318 M+ E EIA+ + GL+ E Y+ ++ N R +G PL++ + Sbjct: 251 YEEMMREGVKQEIAWGQYVIGDNIQGLSRKMLEDYIHYLGNLRWKSLGYAPLYEDNQTEP 310 Query: 319 -PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 W+S+ + K +FFE + T Y + L+ D Sbjct: 311 ESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 346 >gi|307565004|ref|ZP_07627521.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella amnii CRIS 21A-A] gi|307346317|gb|EFN91637.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella amnii CRIS 21A-A] Length = 347 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/333 (26%), Positives = 152/333 (45%), Gaps = 15/333 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ S ++N ++Y W + Y A NN W+P E+ + D+ K L ER Sbjct: 21 RRMIGGNSTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINLAQDI---KDYPNLPAAERK 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +SL +NN+ I +++ E L Q F+E VHS ++ Y++ ++ Sbjct: 78 AYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQECVHSQSYSYMLDTICS 136 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E +Y+ K + L T + + D+ L V + EG++ Sbjct: 137 PEERNDILYQ------WKTDEHLLRRNTFIGDCYNEFQANRDKFCLMKACVANFILEGIY 190 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E P L+T E Sbjct: 191 FYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIIVELKQEEPDLFTPEKVAV 250 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--- 317 M+ E EIA+ + GL Y++++ N R +G + LF+ + Sbjct: 251 YEEMMREGVRQEIAWGQYVIGNDVQGLTQQMVYDYIRYLGNLRWKSLGFDYLFEDNQAEP 310 Query: 318 NPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 W+++ + K +FFE + T Y + L Sbjct: 311 ADMQWVAQYSNANMVKTDFFEAKSTAYAKSTAL 343 >gi|319790519|ref|YP_004152152.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1] gi|317115021|gb|ADU97511.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1] Length = 352 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 93/332 (28%), Positives = 151/332 (45%), Gaps = 23/332 (6%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ L +KY WA + Y N W+P V + D+ +K LTDDER L F Sbjct: 34 TNIFNLNVIKYPWATKLYRVMMANFWIPETVDLTQDVQDYKE---LTDDERQAYDEILSF 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELF 146 +S+ NI I ++ PE L A++EA+HS ++ Y I S+ E E++ Sbjct: 91 LVFLDSIQTTNIP-NIAAYVKAPEITIDLSIHAYQEAIHSQSYGYTIESVVPAEKREEVY 149 Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 +++ P + + + A Y + L P+ E ++ + + EG++FY GF Sbjct: 150 YWWKKDPILFERNKYIADIYQKFLEEPTL---------ENYGEVLIGNYLLEGLYFYNGF 200 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 +L N M G A+ +YI RDE H+ + + E + + K M Sbjct: 201 MFFYNLASRNLMQGTADIIRYINRDELTHVILFEHFMKDLTDEGFKKYLT--KDKIYDMF 258 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 A E ++ + + +G+N S E Y +IAN+R +GLEP+F NP+ + Sbjct: 259 RIAVDQEQRFSKKVIGNKILGMNEQSIEDYTFYIANKRLKALGLEPIFPDRGNPYEHLER 318 Query: 326 VIDLKKE----KNFFETRVTEYQQGAELK-WD 352 + D E NFFE VT Y Q ++ WD Sbjct: 319 IADTGGEANVKANFFEATVTSYNQANAVEGWD 350 >gi|313900116|ref|ZP_07833616.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. HGF2] gi|312955168|gb|EFR36836.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. HGF2] Length = 347 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/336 (25%), Positives = 152/336 (45%), Gaps = 15/336 (4%) Query: 19 VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V +RM+N + ++N +KY W + Y A NN W+P E+ + D+ K L + Sbjct: 18 VGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV---KDYRRLREA 74 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ + L F +S+ N+ + +++ E L QAF+EAVHS ++ Y++ S Sbjct: 75 EKTAYDKTLSFLIFLDSIQTANLP-NVGEYITANEVNLCLTIQAFQEAVHSQSYSYMLDS 133 Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 + + +Y+ K + L + D L + + E Sbjct: 134 ICSPQERTDILYQ------WKDDERLLNRNKFIGDLYNDFQTHRDGRHLMKTMMANYILE 187 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++FY+GF +LGR KM G ++ +YI RDE+ HL +I +++ E P L+T+E Sbjct: 188 GIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILELQKEEPQLFTEEL 247 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ + ML EI + + GL Y+ ++ N R + +G L+ E Sbjct: 248 IEEYKDMLRHGVEEEIRWGEYVIGNHIEGLTMEMVSDYIHYLGNLRSNSLGFGSLYDGFE 307 Query: 318 N---PFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 N W+S + K +FFE R + Y + + L Sbjct: 308 NEPKSMEWVSMYANANLIKTDFFEARSSAYAKSSAL 343 >gi|88608725|ref|YP_506404.1| ribonucleotide-diphosphate reductase subunit beta [Neorickettsia sennetsu str. Miyayama] gi|88600894|gb|ABD46362.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia sennetsu str. Miyayama] Length = 322 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/323 (25%), Positives = 144/323 (44%), Gaps = 26/323 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA++ + HW+P E+PM DD+ W K + E+ ++ + FF ++ Sbjct: 12 PFQYDWAYQAWEIQQKIHWLPEEIPMADDVQDWHHK--ICGTEKNLLTQIFRFFTQADVE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + PE L A E +H + +++ ++G+ E E + Sbjct: 70 VHDCYMRHYAGVFKPPEVCMMLTAFANMETIHIAAYAHLLDTVGMPETEYLAFTK----- 124 Query: 156 TAKANWALQYTQTLSSPSFTTGTK-DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 Y Q + K D E + L V+ EG+ + FA +L+ R Sbjct: 125 ---------YKQMKEKCEYLKAFKMDNPTEIAKTLAVYGAFTEGLQLFASFAILLNFPRF 175 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN---PHLWTKEFQQKSRTMLH-EATL 270 NKM G+ + Y +RDE+LH N + +EN E ++ M+H E Sbjct: 176 NKMKGMGQIIAYSVRDETLHSNSITKLFRTFLLENNIDKFKLEAEIREICNAMVHHEDAF 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +++A+ + GL A ++Y+++IAN R Q+G +++ NP W+ V++ Sbjct: 236 IDLAFEMGDVE----GLKASEVKEYIRYIANLRLKQLGFSEIYEQKVNPLLWLEAVLNTV 291 Query: 331 KEKNFFETRVTEYQQGA-ELKWD 352 + NFFE + TEY + A + WD Sbjct: 292 EHTNFFENKATEYSKAATKGTWD 314 >gi|288801822|ref|ZP_06407264.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica D18] gi|302344783|ref|YP_003813136.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica ATCC 25845] gi|288335864|gb|EFC74297.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica D18] gi|302149273|gb|ADK95535.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica ATCC 25845] Length = 348 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/355 (26%), Positives = 160/355 (45%), Gaps = 21/355 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 + NT +P E R+ +RM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 5 LKRNTLFNPSGDIELRL----RRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQDF---KDYPRLEKAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E +HS ++ Y++ ++ E +Y+ K + L + + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQ------WKTDEHLLNRNKFIGDCYNEFHE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +I ++K E P ++T E + M+ E EIA+ + GLNA Y++++ Sbjct: 231 SIILELKKEEPDMFTPEKIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNAQMVSDYIRYL 290 Query: 300 ANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 N R +G L+ K EN W+ + + K +FFE + T Y + L Sbjct: 291 GNLRWSGLGFGFLYDDNQKEPEN-MKWVGQYSNANMVKTDFFEAKSTAYAKSTAL 344 >gi|215401283|ref|YP_002332587.1| ribonucleotide reductase small subunit [Helicoverpa armigera multiple nucleopolyhedrovirus] gi|198448783|gb|ACH88573.1| ribonucleotide reductase small subunit [Helicoverpa armigera multiple nucleopolyhedrovirus] Length = 313 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/314 (27%), Positives = 150/314 (47%), Gaps = 26/314 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ + +E Y A W EV + D ++ K L +D+R I LGFF++++ Sbjct: 8 LYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQLK--LNNDQRHFIMHVLGFFSAAD 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V N++ + + + E + QA E VH+ + +I +L D+ + + N + Sbjct: 66 SIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILNAFD 125 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + K +WAL++T+ + L + V + + EG++F FA I Sbjct: 126 NIPCVRKKDDWALKWTKN-------------KKLTLAERLVAFAIVEGVFFSGSFAAIFY 172 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + M G+ + I RDE +H +F N + K + M EA Sbjct: 173 IKTLGIMPGLTFSNELISRDEGMHTDFA------CLYYNTRVNEKLSYETILDMFKEAVD 226 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA +Y++F+A+R Q+G +P + NPFP+M+ I L+ Sbjct: 227 IEKEFFTDALPVALLGMNADMMCEYIEFVADRLLLQLG-QPKYYNARNPFPFMNN-ISLE 284 Query: 331 KEKNFFETRVTEYQ 344 + NFFE RV EY+ Sbjct: 285 GKTNFFERRVGEYK 298 >gi|27375117|ref|NP_766646.1| ribonucleotide-diphosphate reductase subunit beta [Bradyrhizobium japonicum USDA 110] gi|27348253|dbj|BAC45271.1| ribonucleoside-diphosphate reductase beta subunit [Bradyrhizobium japonicum USDA 110] Length = 360 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 98/364 (26%), Positives = 165/364 (45%), Gaps = 58/364 (15%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G+ RV + D DV+ +Y WA+E + HWM EVP+ DL W S Sbjct: 19 GKGRVGLLDS---TGSYDVD-----RYAWAYEFWKRQQQTHWMGEEVPLGADLNDWASGR 70 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHT 130 +TD ER ++ + FF S+ V +N Y + P Q ++ AF E VH Sbjct: 71 -VTDSERALLTQIFRFFTQSDIEVGDN-YFKRYIPIFQPLTVQMMM-AAFTNMETVHIDA 127 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 + ++ +LG+ + E F +R + AKA++ ++ D+ + + L Sbjct: 128 YALLLKTLGMPKTE-FEAFRGYAQMRAKADYMHEFG------------VDSVADVARTLA 174 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 +F EGM + FA +L+ R NKM G+ + + +RDESLH GI I+ Sbjct: 175 MFGAFTEGMALFASFAMLLNFPRHNKMNGMGQIVSWSVRDESLHCE-GI-------IKLF 226 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV----------GLNAPSCEQYMQFIA 300 H W +E +R + + ++++A + + FV G+ Y++++A Sbjct: 227 HEWHRETGAVTRPVRDD--IVDVAKTMVKLEENFVELAFGLGKIEGMLPEHIHAYVRYVA 284 Query: 301 NRRCHQIGLEPLFKYTE-----------NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 + R Q+ + P+F + E +P PW+ E+++ + NFFE R TEY + A Sbjct: 285 DWRLAQLRIAPVFGFFEAKEGGFTQLKAHPLPWLVEILNGVEHANFFEQRATEYSKAASR 344 Query: 350 -KWD 352 WD Sbjct: 345 GSWD 348 >gi|269865627|ref|XP_002651990.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063361|gb|EED42066.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 290 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/296 (29%), Positives = 137/296 (46%), Gaps = 31/296 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W EV M D + + LT +E+ IK L FFA+S+ +V N+V + E Sbjct: 7 WTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEA 63 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLS 170 + + Q E +HS + +I +L D+ E LFN +PSI KA WA ++ S Sbjct: 64 KMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIA--S 121 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 SF T V + EG++F FA I L + M G+ + I RD Sbjct: 122 DTSFDTRC------------VAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRD 169 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E LH +F + H + ++ EA +E + E++P +G+N Sbjct: 170 EGLHTDFACLL---------HKYINNKCTVIEDIVREAVAIEQEFLSESLPVSLIGMNCK 220 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 QY++F+A+R +G + ++ + NPF +M E I L+ + NFFE R T YQ+G Sbjct: 221 LMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERRETNYQKG 274 >gi|158430770|pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution gi|158430771|pdb|2RCC|B Chain B, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution gi|158430772|pdb|2RCC|C Chain C, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution Length = 346 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 87/328 (26%), Positives = 159/328 (48%), Gaps = 19/328 (5%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +LN +S +V +++ WA+ Y + N W P E+ D + + LT+ E+ Sbjct: 22 ILNGKSSNVLNWDDVRFSWAYPLYKNXLANFWTPFEINXSHDAKQFPT---LTETEQEAF 78 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140 K+ +G A +S+ + A +L++ +F+E VH+ ++ Y+++SL Sbjct: 79 KKIIGLLAFLDSVQTDYSXRAA-EYLTDSSLAALXSVLSFQEVVHNQSYSYVLSSLVPKA 137 Query: 141 DEGELFNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 + E+F ++ + + + + Y + + +P+ T FL+ + V+ V+ EG+ Sbjct: 138 TQDEIFEYWKHDDVLKERNEFIIDGYEKFVDNPTPKT--------FLESI-VYDVILEGL 188 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 FY+GFA +L R K V + YI RDE LH+ ++ ++ +E P L T+E + Sbjct: 189 NFYSGFAFFYNLARNQKXVSTSTXINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKT 248 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTEN 318 +T L +A LE + + G+N E Y+ FIAN+R Q+G E P + N Sbjct: 249 FVKTTLXKAADLEKDWFRYIIGDKIPGINPEDXETYISFIANKRAVQLGXEKPYPEIKHN 308 Query: 319 PFPWMSEVIDLKKEK-NFFETRVTEYQQ 345 P W+ D+ K +FFE + +Y + Sbjct: 309 PXKWIRAYEDVNSGKSDFFEQKSRQYAK 336 >gi|229495919|ref|ZP_04389645.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas endodontalis ATCC 35406] gi|229317232|gb|EEN83139.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas endodontalis ATCC 35406] Length = 346 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 91/343 (26%), Positives = 162/343 (47%), Gaps = 19/343 (5%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + +R++N + ++N +KY W Y +A NN W+P E+ + D+ K L+ Sbjct: 15 IELSKRRLINGNTTNLNDFNNIKYPWVSNWYRTAMNNFWIPEEINLSQDV---KDYRILS 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + L F +S+ N+ + +++ E L QAF+EAVHS ++ Y++ Sbjct: 72 KAEKTAYDKILSFLIFLDSIQTANLP-NVGEYITANEVNLCLTIQAFQEAVHSQSYSYML 130 Query: 136 TSLGLDEGELFNMY--REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ E +Y R+ + + + K DQ L V Sbjct: 131 DTICSPEERTSILYQWRDDEHLLRRNKFIGDIYNDFQL------HKTPDQ--LARTMVAN 182 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +++ E P L+ Sbjct: 183 YILEGVYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILELRREQPELF 242 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T E + + M+ E L EIA+ + GL + Y+ ++AN R +GL +F Sbjct: 243 TPEREAEFLEMIREGALQEIAWGKYVIGDEIEGLTSQMVSDYIMYLANLRSANLGLGVIF 302 Query: 314 K-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 + E P W+S+ + K +FFE + + Y + A ++ D Sbjct: 303 PGHEEEPASMSWVSQYSNSNLIKTDFFEAKPSAYAKSASIEDD 345 >gi|58700135|ref|ZP_00374651.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58533347|gb|EAL57830.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] Length = 225 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 11/225 (4%) Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 E +H + Y++ ++G+ E E + + + ++ K + L++ ++ K + Sbjct: 10 ETIHIAAYSYLLDTIGMPESE-YQAFLKYDAMRKKYEYMLEFEES---------KKHDKK 59 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L VF EG+ + FA +L+ R KM G+ + + RDE+LH N I + N Sbjct: 60 HVAKTLAVFGAFTEGLQLFASFAILLNFQRFGKMKGMGQIIAWSARDETLHTNSIIMLFN 119 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANR 302 EN +W EF+++ + LE + G V GL+A Y++++ANR Sbjct: 120 TFIKENNEIWDNEFKEELYSACRTIVELEDEFIKLAFDLGDVEGLSAEEVRNYIRYVANR 179 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 R Q+GLE ++ +NP PW+ E+++ + NFFE RVTEY + A Sbjct: 180 RLMQLGLESIYDVNDNPIPWLDEILNGVEHTNFFENRVTEYSRAA 224 >gi|83592781|ref|YP_426533.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum rubrum ATCC 11170] gi|83575695|gb|ABC22246.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC 11170] Length = 358 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 98/339 (28%), Positives = 163/339 (48%), Gaps = 50/339 (14%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y WA+E + HWM EVP+ +DL W S ++D ER ++ + FF S+ V+ Sbjct: 30 RYPWAYEFWKKQQQVHWMGEEVPLGEDLKDWASDR-VSDQERNLLTQIFRFFTQSDVEVS 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 +N L Y + P Q ++ AF E +H + ++T+LG+ E F+ +R+ ++ Sbjct: 89 DN-YLKRYMPIFQPLEIQMMM-AAFTNMETIHIDAYALLLTTLGMPRTE-FSAFRDYAAM 145 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 KA+ Y T F GT + + L +F EGM + FA +L+ R N Sbjct: 146 RDKAD----YMHT-----FGVGTM---ADVSRTLAMFGAFTEGMALFASFAMLLNFPRHN 193 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 KM G+ + + +RDESLH GI I H W +E ++ + + +L++A Sbjct: 194 KMKGMGQIVTWSVRDESLHCQ-GI-------IRLFHEWNRETGALTKPVRDD--ILDVAT 243 Query: 276 AHETMPKGFV----------GLNAPSCEQYMQFIANRRCHQIGLEPL---FKYTE----- 317 + + FV G+ A + Y++++A+ R Q+ L L F+ TE Sbjct: 244 TMVGLEEKFVDLAFELGAIEGMRAEDIKSYVRYVADWRLTQLKLPILYGHFRETEAGYEQ 303 Query: 318 ---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352 +P PW+ E+++ + NFFE R TEY + A + WD Sbjct: 304 LRPHPLPWLVEILNGVEHANFFEQRSTEYSKAATQGAWD 342 >gi|20069937|ref|NP_613141.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A] gi|20043331|gb|AAM09166.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A] gi|33331769|gb|AAQ11077.1| putative ribonucleotide reductase small subunit-like protein [Mamestra configurata NPV-A] Length = 313 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 85/314 (27%), Positives = 147/314 (46%), Gaps = 26/314 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ + +E Y A W EV + D ++ K L +D+R I LGFF++++ Sbjct: 8 LYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQLK--LNNDQRHFIMHVLGFFSAAD 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V N++ + + + E + QA E VH+ + +I L D+ + N + Sbjct: 66 SIVNINVLNYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIIELIPDKKHQDLILNAFD 125 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP + K +WAL++ + D+ + V + + EG++F FA I Sbjct: 126 NVPCVRKKDDWALKWIEN-------------DKATFAERLVAFAIVEGVFFSGSFAAIFY 172 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + M G+ + I RDE +H +F N + K +K M EA Sbjct: 173 IKTLGIMPGLTFSNELISRDEGMHTDFA------CLYYNTRVKEKLSYEKILDMFKEAVD 226 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA +Y++F+A+R Q+G +P + NPF +M+ I L+ Sbjct: 227 IEKEFFTDALPVSLLGMNATMMCEYIEFVADRLLMQLG-QPKYYNARNPFSFMNN-ISLE 284 Query: 331 KEKNFFETRVTEYQ 344 + NFFE RV EY+ Sbjct: 285 GKTNFFERRVGEYK 298 >gi|288928561|ref|ZP_06422408.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288331395|gb|EFC69979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 348 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/336 (26%), Positives = 156/336 (46%), Gaps = 15/336 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N ++Y WA + Y A NN W+P E+ + D K L ER Sbjct: 22 RRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEINLTQDT---KDYPLLPPAERK 78 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +SL + N+ ++ ++ E L QAF+E VHS ++ Y++ ++ Sbjct: 79 AYDKILSFLVFLDSLQSANLP-SLTEFITANEVNLCLHIQAFQECVHSQSYSYMLDTICS 137 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E +Y+ K + L T + + D+ L + + EG++ Sbjct: 138 PEERNDILYQ------WKTDEHLLRRNTFIGDCYNEFYANNDKASLMKTLMANYILEGIY 191 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF +L R KM G A++ +YI RDE+ HL ++I+++K E P +T E + Sbjct: 192 FYSGFMFFYNLARNGKMSGSAQEIRYINRDENTHLWLFRNIIHEMKKEEPEYFTPEKVKV 251 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 M+ E EIA+ + GLNA Y++++ N R +G L + E P Sbjct: 252 YEEMMREGVRQEIAWGQYVIGDEVQGLNAQMVNDYIRYLGNMRWRSLGFGNLLEDNIEEP 311 Query: 320 --FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 W+++ + K +FFE + T Y + ++ D Sbjct: 312 ENMRWVAQYANANMVKTDFFEAKSTAYAKSTAIEDD 347 >gi|325859841|ref|ZP_08172971.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella denticola CRIS 18C-A] gi|325482767|gb|EGC85770.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella denticola CRIS 18C-A] Length = 348 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/355 (25%), Positives = 159/355 (44%), Gaps = 21/355 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 + NT +P + R+ KRM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 5 LKRNTLFNPSGDTDLRL----KRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQDF---KDYPRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E +HS ++ Y++ ++ E +Y+ K + L + + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQ------WKTDEHLLNRNKFIGDCYNEFHE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +I ++K E P ++T + + M+ E EIA+ + GLN Y++++ Sbjct: 231 SIILELKKEEPDMFTPDRIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290 Query: 300 ANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 N R +G L+ K EN W+ + + K +FFE + T Y + L Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPEN-MKWVGQYSNANMVKTDFFEAKSTAYAKSTAL 344 >gi|299472857|emb|CBN80426.1| EsV-1-128 [Ectocarpus siliculosus] Length = 419 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 28/299 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ E+ M D W + + DE+ +K L FFAS + +V NI L + P+ Sbjct: 132 WVVEEIDMSGDSKDW---DDASSDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQI 188 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV---PSITAKANWALQYTQTLS 170 RQ+ Q EAVH ++ +I + D E ++ R + P I KA WA ++ + Sbjct: 189 RQHFAIQEATEAVHGESYSLLIQTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMNPET 248 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + L + V + EG+ F F I L + K G++ I RD Sbjct: 249 AS-------------LAERLVGFTCLEGVQFSGSFCAIYWLKKRQKFKGLSFANSLIARD 295 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E LH + + HL K Q++ + A +E + +P +G++ Sbjct: 296 EGLHATASVLIYK-------HLRNKLPQERVHEIFEHAVSVECEFISSALPVALIGISEK 348 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 S +Y++F+A+ +Q+G + ++ NPF WM ++I L+ + NFFE RV EY + L Sbjct: 349 SMTEYIKFVADYWLNQLGYDKVYN-CANPFEWM-DMISLQGKTNFFENRVAEYSKPGVL 405 >gi|282860353|ref|ZP_06269421.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella bivia JCVIHMP010] gi|282586851|gb|EFB92088.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella bivia JCVIHMP010] Length = 347 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 15/333 (4%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +RM+ + ++N ++Y W + Y A NN W+P E+ + D+ K L ER Sbjct: 21 RRMIGGNTTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINLAQDI---KDYPNLPPAERK 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L F +SL +NN+ I +++ E L Q F+E VHS ++ Y++ S+ Sbjct: 78 AYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQECVHSQSYSYMLDSICS 136 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E +Y+ K + L T + ++ L + + EG++ Sbjct: 137 PEERNDILYQ------WKTDEHLLRRNTFIGDCYNEFQAHRNKFCLMKACIANFILEGIY 190 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E P L+T E Sbjct: 191 FYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNMIIELKQEEPELFTPEKVAI 250 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--- 317 M+ E EIA+ + GL Y++++ N R +G + LF+ + Sbjct: 251 YEAMMREGVAQEIAWGQYVIGNEVQGLTQQMVSDYIRYLGNLRWKSLGFDYLFEDNQTEP 310 Query: 318 NPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 W+++ + K +FFE + T Y + L Sbjct: 311 TDMEWVAQYSNANMVKTDFFEAKSTAYAKSTAL 343 >gi|157325080|ref|YP_001468505.1| gp125 [Listeria phage A511] gi|66732769|gb|AAY53360.1| gp57 [Listeria phage P100] gi|66733088|gb|AAY52906.1| gp125 [Listeria phage A511] Length = 343 Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/314 (25%), Positives = 147/314 (46%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 ++Y + Y N+W+P EV M+ D K N L+++E+ +G A+ +S Sbjct: 33 IRYPSFYRAYKELTTNYWLPDEVDMKSDA---KQYNHLSEEEKYAFDSIIGLLATLDS-P 88 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++S+ A +EA+H+ ++ Y++ S+ ++ +F R P+ Sbjct: 89 QTRFIYNIAEYVSDASVHAITAIIAQQEAIHNESYSYVLASITNLQEQNRVFEEARTHPT 148 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I + ++ S+ + E + V + EG+ FY+GFA +L R Sbjct: 149 IIKRNAPIMK--------SYDDFMNNKTPENMVKALVQSSILEGINFYSGFAYFYNLVRQ 200 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G + +I RDE H F ++I I ENP L T E A LE A Sbjct: 201 NKMTGTGKIISFINRDELAHSKFISELIRAIVGENPELQTDELNDYVYASFRHAVELEQA 260 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 ++ E + +G G++ Y+++ AN+ +GL+P+++ +TEN W+ D + Sbjct: 261 WSSEVL-QGIEGIDVEEMLDYVKYRANKMLGMLGLQPMYQGHTENSMTWIKAYADNFTET 319 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R + Y++ Sbjct: 320 KTDFFEMRNSSYKK 333 >gi|327312835|ref|YP_004328272.1| ribonucleoside-diphosphate reductase subunit beta [Prevotella denticola F0289] gi|326946303|gb|AEA22188.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella denticola F0289] Length = 348 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 159/355 (44%), Gaps = 21/355 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 + NT +P + R+ +RM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 5 LKRNTLFNPSGDTDLRL----RRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQDF---KDYPRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E +HS ++ Y++ ++ E +Y+ K + L + + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQ------WKTDEHLLNRNKFIGDCYNEFHE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +I ++K E P ++T + + M+ E EIA+ + GLN Y++++ Sbjct: 231 SIILELKKEEPDMFTSDKIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290 Query: 300 ANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 N R +G L+ K EN W+ + + K +FFE + T Y + L Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPEN-MKWVGQYSNANMVKTDFFEAKSTAYAKSTAL 344 >gi|325268390|ref|ZP_08135022.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella multiformis DSM 16608] gi|324989244|gb|EGC21195.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella multiformis DSM 16608] Length = 348 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 92/358 (25%), Positives = 160/358 (44%), Gaps = 21/358 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 + NT +P + R+ +RM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 5 LKRNTLFNPSGDTDLRL----RRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQDF---KDYPRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E +HS ++ Y++ ++ E +Y+ K + L + + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEERNDILYQ------WKTDEHLLNRNKFIGDCYNEFHE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +I ++K E P ++T + + M+ E EIA+ + GLN Y++++ Sbjct: 231 SIILELKKEEPDMFTPDRIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290 Query: 300 ANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 N R +G L+ K EN W+ + + K +FFE + T Y + L D Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPEN-MKWVGQYSNANMVKTDFFEAKSTAYAKSTALADD 347 >gi|325294459|ref|YP_004280973.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064907|gb|ADY72914.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 352 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 90/332 (27%), Positives = 153/332 (46%), Gaps = 23/332 (6%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ L +KY WA + Y N W+P V + D+ +K LT+DER L F Sbjct: 34 TNIFNLNDVKYEWATKLYRVMMANFWIPETVDLTQDVLDYKE---LTEDERQAYDEILSF 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146 +S+ NI I ++ PE L A++EA+HS ++ Y I S+ + ++ Sbjct: 91 LVFLDSIQTTNIP-NIAAYVKAPEITIDLSIHAYQEAIHSQSYGYTIESVIPPQHRETVY 149 Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 +++ P + + + A Y + L P+ E ++ V + EG++FY GF Sbjct: 150 YWWKKDPILFERNKYIADIYQKFLEEPTM---------ENYGEVLVGNYLLEGLYFYNGF 200 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 +L N M G A+ +YI RDE H+ + + E + + K M Sbjct: 201 MFFYNLASRNLMQGTADIIRYINRDELTHVILFEHFMKDLTDEEFKKYLP--KDKIYEMF 258 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 A E ++ + + +G+N S E+Y ++AN+R +GL+P+F T NP+ + Sbjct: 259 KVAVNQEQRFSKKVIGNKILGMNEKSIEEYTYYVANKRLKALGLDPIFPDTPNPYEHLER 318 Query: 326 VIDLKKE----KNFFETRVTEYQQGAELK-WD 352 + D E NFFE VT Y Q + ++ WD Sbjct: 319 IADTGGEGNVKANFFEATVTSYNQASAVEGWD 350 >gi|225568010|ref|ZP_03777035.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM 15053] gi|225163184|gb|EEG75803.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM 15053] Length = 355 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 89/340 (26%), Positives = 160/340 (47%), Gaps = 19/340 (5%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ K L Sbjct: 24 TDVRSRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEISLGVDI---KDYPRLP 80 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +ER + L F +S+ N+ I +++ E L Q F+EAVHS ++ Y++ Sbjct: 81 AEERRAYDKILSFLIFLDSIQTANLP-HIGEYITANEINLCLSIQTFQEAVHSQSYSYML 139 Query: 136 TSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ + E+ ++E + + + TK A + ++ L Y Sbjct: 140 DTICEPQKREEILYQWKEDEHLLLRNEFIGSLYNEFQE------TKSA-RSLVRTLIANY 192 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++ ++K E P L+ Sbjct: 193 IL-EGVYFYSGFMFFYNLGRNQKMPGSVQEIRYINRDENTHLWLFRSMLQELKKEEPQLF 251 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E + R M+ E EI + H + GL Y++++ N RC +G E ++ Sbjct: 252 AAEDIKMYRQMIREGCEQEIRWGHYVIGDKIQGLTKDMITSYIRYLGNLRCTGLGFERIY 311 Query: 314 K-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 + Y P W+ + + K +FFE + T Y + + L Sbjct: 312 EGYDTIPESMRWVEQYSNANLIKTDFFEAKSTAYAKSSAL 351 >gi|315930891|gb|EFV09876.1| ribonucleotide reductase, small chain family protein [Campylobacter jejuni subsp. jejuni 305] Length = 305 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 10/276 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY WA + + N W P EV D ++ LT E+ M S +S Sbjct: 35 KYTWALKLWDLMEANTWFPKEVDTTKDALDYRC--NLTAGEKRMYDLVWSQLISMDSFQT 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + ++ Sbjct: 93 NNLADNINPYITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLRE 152 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ + L+ D D L V + EG++FY+GF I +L RA KM Sbjct: 153 KNDFISSIYEELAG--------DVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKM 204 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 +G A+ ++I RDE HL ++IN ++ E P L+ E K M +A LEI + Sbjct: 205 LGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGK 264 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +G E+Y+ ++ ++R I L+ L+ Sbjct: 265 YITQNQIMGFTDDIIEEYIHYLVDQRLSAINLDKLY 300 >gi|160947324|ref|ZP_02094491.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270] gi|158446458|gb|EDP23453.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270] Length = 349 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/343 (25%), Positives = 161/343 (46%), Gaps = 19/343 (5%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + + ++M+N + ++N +KY W E Y +A NN W+P E+ + DL +K L Sbjct: 15 IELSKRKMINGNTTNLNDFNNVKYTWTTEWYRNAMNNFWIPEEINLFQDLKDYKI---LD 71 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + E+ + L F +S+ N+ I +++ E L QA++EA+HS ++ Y++ Sbjct: 72 EYEKTAFDKVLSFLIFLDSIQTANLPY-IGEYITANEINLCLTIQAYQEAIHSQSYGYML 130 Query: 136 TSLGLDEGELFNMY--REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 S+ E +Y R+ + A+ + + + D L V Sbjct: 131 DSICSPEERTNILYQWRDDEHLLARNKFI--------GDLYNEFQVNKDPYSLVKTMVAN 182 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++ +++ E P L+ Sbjct: 183 YILEGVYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFKKMLLELQNEEPELF 242 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T+E + M+ EIA+ + + GL E Y++++ N R + L+ Sbjct: 243 TEEKVAVYKDMIKTGVEQEIAWGKYVLGENIPGLTIQMVEDYIKYLGNLRSTALNFGKLY 302 Query: 314 K-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 Y E P W+SE D K +FFE + + Y + + + D Sbjct: 303 DGYDEEPESMKWVSEYSDPNAIKTDFFEAKPSAYSKSSVIDDD 345 >gi|22549454|ref|NP_689227.1| putative ribonucleotide reductase small subunit-like protein [Mamestra configurata NPV-B] gi|22476633|gb|AAM95039.1| putative ribonucleotide reductase small subunit-like protein [Mamestra configurata NPV-B] Length = 313 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/314 (26%), Positives = 148/314 (47%), Gaps = 26/314 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ + +E Y A W EV + D ++ K L +D+R I LGFF++++ Sbjct: 8 LYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQLK--LNNDQRHFIMHVLGFFSAAD 65 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 S+V N++ + + + E + QA E VH+ + +I +L D+ + + N + Sbjct: 66 SIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILNAFD 125 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + K +WAL++T+ L + V + + EG++F FA I Sbjct: 126 NISCVRKKDDWALKWTKNKKLT-------------LAERLVAFAIVEGVFFSGSFAAIFY 172 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + M G+ + I RDE +H +F N + K + M EA Sbjct: 173 IKTLGIMPGLTFSNELISRDEGMHTDFA------CLYYNTRVNEKLSYETILDMFKEAVD 226 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + +P +G+NA +Y++F+A+R Q+G +P + NPFP+M+ I L+ Sbjct: 227 IEKEFFTDALPVALLGMNADMMCEYIEFVADRLLLQLG-QPKYYNARNPFPFMNN-ISLE 284 Query: 331 KEKNFFETRVTEYQ 344 + NFFE RV EY+ Sbjct: 285 GKTNFFERRVGEYK 298 >gi|47213103|emb|CAF89523.1| unnamed protein product [Tetraodon nigroviridis] Length = 407 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/296 (29%), Positives = 131/296 (44%), Gaps = 41/296 (13%) Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 H + +V + DL W+S L DDER I L FFA+S+ +V N+V + + E Sbjct: 132 HLLWLQVDLSKDLQHWES---LKDDERFFISHVLAFFAASDGIVNENLVERFTQEVQVTE 188 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTL 169 R + Q E +HS + +I + + E LFN +P + KA+WAL + Sbjct: 189 ARCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIETLPCVKKKADWALNW---- 244 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 G + A + V + EG++F FA I L + M G+ + I R Sbjct: 245 ------IGNQKAS---YGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISR 295 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE LH +F + HL K Q ++ A +E + E +P +G+N Sbjct: 296 DEGLHCDFACLMFK-------HLLHKPSAQTVGAIIRNAVEIEQEFLTEALPVKLIGMNC 348 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ++Y++FI ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 349 QLMKRYIEFIYR--------------AENPFDFM-ENISLEGKTNFFEKRVGEYQR 389 >gi|323487827|ref|ZP_08093085.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus donghaensis MPA1U2] gi|323398561|gb|EGA91349.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus donghaensis MPA1U2] Length = 348 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/325 (27%), Positives = 148/325 (45%), Gaps = 34/325 (10%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y ++ Y + N W E+ MQDD+ W S + + D L I L AS +SL Sbjct: 38 IAYPQMYDLYQALLANFWKAQEINMQDDIKQWDSLSSVEKDVFLRINTQL---ASLDSLQ 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPS 154 + A+ ++++ + + +EAVH+ ++ YI++SL ++ E FN + P Sbjct: 95 TPTMSQAM-DYVTDSSFKAIFAVISQQEAVHTESYSYILSSLVSVSEQNERFNQAKSDPV 153 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD--------LFVFYVVFEGMWFYTGFA 206 + + L DA +EF Q+ L V + EG++FY GFA Sbjct: 154 VQKRNELIL----------------DAYEEFRQNPTPQNLFKLSVNSINLEGIYFYAGFA 197 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 L R KM+ + YI RDE H F I + ENP L T E Q T + Sbjct: 198 FFYHLARQQKMLKTSTMISYIQRDEMQHAYFIAQFIRIMLTENPELHTDENIQYIYTTID 257 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 +A LE +A + GL+ +Y++++AN+R Q+GL+ L++ NP PW+ Sbjct: 258 KAVQLEKEWAQYILA-DIEGLDLVEFGEYVEYLANKRLRQLGLDNLYEERSNPMPWIQVF 316 Query: 327 IDL---KKEKNFFETRVTEYQQGAE 348 D + +FFE + Y + ++ Sbjct: 317 GDDMMNDTKSDFFEQKSRTYTKVSQ 341 >gi|88861512|ref|ZP_01136127.1| ribonucleotide-diphosphate reductase beta subunit [Pseudoalteromonas tunicata D2] gi|88816487|gb|EAR26327.1| ribonucleotide-diphosphate reductase beta subunit [Pseudoalteromonas tunicata D2] Length = 219 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 26/228 (11%) Query: 127 HSHTFQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H + +++ ++G+ E E F Y+E+ Y Q F +K ++ Sbjct: 1 HVAAYSHLLDTIGMPESEYSAFMKYKEMKD-------KYDYMQ-----GFNVNSK---ED 45 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + VF EG+ + FA +L+ R NKM G+ + + +RDE+LH N I + + Sbjct: 46 IAKTVAVFSAFTEGLQLFASFAILLNFPRHNKMKGMGQIVTWSVRDETLHCNSMIRIFKE 105 Query: 245 IKIENPHLWT----KEFQQKSRTML-HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 ENP +WT KE + R ++ HE +++A+ M GL A + Y++FI Sbjct: 106 FIKENPEIWTPTLKKELYEACRIIVEHEDAFIDLAFEMGPME----GLTAQEVKDYIRFI 161 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ANRR Q+GLEP++ +NP W+ +++ + NFFE R TEY + + Sbjct: 162 ANRRLIQLGLEPIYDVQKNPLTWLDTMLNAVEHMNFFEGRATEYSKAS 209 >gi|13242599|ref|NP_077613.1| EsV-1-128 [Ectocarpus siliculosus virus 1] gi|13177402|gb|AAK14546.1|AF204951_128 EsV-1-128 [Ectocarpus siliculosus virus 1] Length = 419 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 135/299 (45%), Gaps = 28/299 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ E+ + D W+ + DE+ +K L FFAS + +V NI L + P+ Sbjct: 132 WVVEEIDLSGDSKDWEDASS---DEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQI 188 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV---PSITAKANWALQYTQTLS 170 RQ+ Q EAVH ++ +I + D E ++ R + P I KA WA ++ + Sbjct: 189 RQHFAIQEATEAVHGESYSLLIQTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMNPET 248 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + L + V + EG+ F F I L + K G++ I RD Sbjct: 249 AS-------------LAERLVGFTCLEGVQFSGSFCAIYWLKKRQKFKGLSFANSLIARD 295 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E LH + + +K P +++ + A +E + +P +G++ Sbjct: 296 EGLHATASVLIYKHLKNRLP-------RERVHEIFKHAVSVECEFISSALPVALIGISEK 348 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 S +Y++F+A+ +Q+G + ++ NPF WM ++I L+ + NFFE RV EY + L Sbjct: 349 SMTEYIKFVADYWLNQLGYDKVYN-CANPFEWM-DMISLQGKTNFFENRVAEYSKPGVL 405 >gi|269864629|ref|XP_002651641.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064151|gb|EED42415.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 277 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 129/276 (46%), Gaps = 28/276 (10%) Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT +E+ IK L FFA+S+ +V N+V + E + + Q E +HS + Sbjct: 11 LTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSK 70 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I +L D+ E LFN +PSI KA WA ++ S SF T Sbjct: 71 LIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIA--SDTSFDTRC------------ 116 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 117 VAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLL--------- 167 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 H + ++ EA +E + E++P +G+N QY++F+A+R +G + Sbjct: 168 HKYINNKCTVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEK 227 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 ++ + NPF +M E I L+ + NFFE R YQ+G Sbjct: 228 KIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 261 >gi|197322443|ref|YP_002154716.1| putative ribonucleotide reductase small subunit [Feldmannia species virus] gi|197130510|gb|ACH46846.1| putative ribonucleotide reductase small subunit [Feldmannia species virus] Length = 342 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/321 (23%), Positives = 137/321 (42%), Gaps = 28/321 (8%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 NQ +Y + Y W E+ + +D+ W + DE+ I L FFAS Sbjct: 33 NQKSEFEYADVYALYKKEIACFWTVEEMDLSEDVECWDKS---SSDEQHFIIHILAFFAS 89 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNM 148 + +V N+ + + P+ R + Q E++H + +I + + ++ Sbjct: 90 LDQIVMENVSVNFGDEIVIPQVRSHFAIQNAIESIHGEAYSILIQTYVKNSQQQSKILRS 149 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 +E+P I KA W T D + L + V + EG+ F F I Sbjct: 150 VQEMPIIRKKAQW-------------VTSWMDPETCSLAERLVAFTCVEGVQFSGAFCAI 196 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 L + + G+ I RDE LH + + N +K P + + +A Sbjct: 197 YWLKKQGRFRGLCFANSLIARDEGLHAEGSVMIYNHLKHRLPVAVVHD-------IFGQA 249 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 T +E + E +P +G+NA + Y+++I++ ++G LF ++NPF WM+ +I Sbjct: 250 TTIEKEFIREALPVSLIGINAGTMSTYIEYISDFWLEKLGYPKLFN-SKNPFEWMT-MIG 307 Query: 329 LKKEKNFFETRVTEYQQGAEL 349 ++ + NFFE RV EY + + Sbjct: 308 MEGKSNFFEGRVAEYSKAGSM 328 >gi|118197598|ref|YP_874310.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV] gi|113472593|gb|ABI35800.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV] Length = 341 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 91/328 (27%), Positives = 149/328 (45%), Gaps = 27/328 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 +LP++ W +A + W E + D W+ K L ER +K L FFAS++ Sbjct: 11 ILPIENQNLWRMDKTAMDCMWKVEEDDLSRDFDDWRHK--LCVQERFFLKHILAFFASAD 68 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH-----TFQYIITSLGLDEGELFNM 148 ++V N++ + + E R + +Q E VHS F+YI S + +L N Sbjct: 69 TIVNINLIDYVRAAVPELEARYFYDQQILIENVHSEMYSLLVFEYIKNS--EERNKLLNA 126 Query: 149 YREVPSITAKANWALQYTQT-----------LSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 + + I KA WAL++T++ L K + + + F +V E Sbjct: 127 FDRIDCIKKKAQWALKWTESKWWQDYWVDPVLGCVQRRFRNKSYPSKLARRMIAFAIV-E 185 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I + M G+ + I RDE LH +F N N L Sbjct: 186 GIFFSGSFAAIFFIKTKGLMPGLTFSNELISRDEGLHTDFACMYYNNYIPINEKLSP--- 242 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 Q+ +M EA +E + +P +G+NA +Y++F+A+R ++ +P T Sbjct: 243 -QQILSMFIEAVDIEKEFFTTALPCYLLGINATEMCKYIEFVADRLLVELR-QPKHFNTP 300 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 NPF +M+ I L+ + NFFE RV EY++ Sbjct: 301 NPFNFMTN-ISLEGKTNFFERRVGEYKR 327 >gi|323333040|gb|EGA74442.1| Rnr2p [Saccharomyces cerevisiae AWRI796] Length = 306 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 18/226 (7%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA WAL++ Q DAD F + L F + EG++ Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 F FA I L + M G+ + I RDE LH +F + +K Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLK 288 >gi|323354474|gb|EGA86313.1| Rnr2p [Saccharomyces cerevisiae VL3] Length = 306 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 18/226 (7%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA WAL++ Q DAD F + L F + EG++ Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 F FA I L + M G+ + I RDE LH +F + +K Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLK 288 >gi|323337103|gb|EGA78359.1| Rnr2p [Saccharomyces cerevisiae Vin13] Length = 296 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 102/218 (46%), Gaps = 18/218 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LFN +P I KA WAL++ Q DAD F + L F + EG++ Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAFASI-EGVF 242 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 F FA I L + M G+ + I RDE LH +F Sbjct: 243 FSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFA 280 >gi|332297025|ref|YP_004438947.1| ribonucleotide reductase [Treponema brennaborense DSM 12168] gi|332180128|gb|AEE15816.1| ribonucleotide reductase [Treponema brennaborense DSM 12168] Length = 346 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 88/331 (26%), Positives = 146/331 (44%), Gaps = 26/331 (7%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++N +KY W + Y A NN W+P E+ + D K L + ER + L F Sbjct: 28 TNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLSQDT---KDYPHLDEAERTAYDKILSF 84 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 +S+ N+ + +++ E L Q F+E VHS ++ Y++ ++ E + Sbjct: 85 LIFLDSIQTANLP-NVGEYITANEVNLCLSIQTFQECVHSQSYSYMLDTICSPEQRNEIL 143 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE------FLQDLFVFYVVFEGMWFY 202 Y+ W + L +F G + QE F++ L Y++ EG++FY Sbjct: 144 YQ----------WKTD-ERLLKRNTFIGGCYNDFQEHKDFFRFMKVLIANYIL-EGIYFY 191 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262 +GF +L R KM G A++ +YI RDE+ HL ++I ++K E P ++T+E Sbjct: 192 SGFMFFYNLARNGKMPGSAQEIRYINRDENTHLWLFKNIILELKKERPDMFTEEKVASYA 251 Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL---FKYTENP 319 ML E EI + + GL Y+ ++ N R + PL F Sbjct: 252 EMLKEGVRQEIEWGEYVIGDDIPGLTRKMVRDYITYLGNLRWTNLDFPPLYPGFDTEPED 311 Query: 320 FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 W+S + K +FFE R T Y + L Sbjct: 312 MAWVSAYSNANMVKTDFFEARSTAYAKSTAL 342 >gi|209972895|ref|YP_002300342.1| gp4 [Bacillus phage SPO1] gi|209871215|gb|ACI90971.1| gp4 [Bacillus phage SPO1] Length = 346 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 83/319 (26%), Positives = 149/319 (46%), Gaps = 21/319 (6%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 ++Y + Y +N W+P + + +D+ + + T + L + +G ++ +S + Sbjct: 35 IRYPQMYTIYKQIRSNFWIPQRISLVEDVRQFPNLPKRTQEAYLDV---IGQLSTLDS-I 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVP 153 +VL R LS P + A +EA H ++ Y+++S+ D + E+F+ + Sbjct: 91 QTRLVLEFGRFLSEPTYQPIAANIAQQEATHEESYSYVLSSVVPDTNKQNEVFDKAKTNE 150 Query: 154 SITAKANWALQYTQT-LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + + + +Y Q + +P+ Q F + L V VV EG++FY+ F +L Sbjct: 151 DVLKRNDRVYKYYQEFVDNPT--------PQTFFRAL-VACVVLEGIYFYSAFTFFYNLA 201 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R + MVG + YI RDE H F V+ + E P L T+E M+ EA LE Sbjct: 202 RNHLMVGTSTMINYIQRDEVAHAYFFSQVLRYLMAERPELHTEENVNFIYDMMQEAADLE 261 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL--- 329 I Y+ + + GL+ E Y++ + NRR +GL+ ++ EN PWM D Sbjct: 262 IEYSQKIL-HDIPGLDLEELEGYIKSLCNRRLRGVGLDDIYAGVENSMPWMIAFDDGSNN 320 Query: 330 KKEKNFFETRVTEYQQGAE 348 + + + FE + Y++ E Sbjct: 321 QTKSDMFEQKSRNYKKVDE 339 >gi|293401949|ref|ZP_06646089.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304607|gb|EFE45856.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 347 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 86/346 (24%), Positives = 156/346 (45%), Gaps = 15/346 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ +V ++RM+N + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNEHGDCDVINRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV-- 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 K L+ E+ + L F +S+ N+ + +++ E L QAF+EA+H Sbjct: 66 -KDYRRLSQAEKNAYDKTLSFLIFLDSIQTANLP-NVGDYITANEVNLCLTIQAFQEALH 123 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y++ S+ + +Y+ K + L + D L Sbjct: 124 SQSYSYMLDSICSSQERNDILYQ------WKNDARLLERNKFIGDLYNDFITHHDGIHLM 177 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +++ Sbjct: 178 KTMMANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILELQK 237 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P L+T ++ + ML EI + + GL +Y+ ++ N R + Sbjct: 238 EEPQLFTPALVEEYKDMLRYGVEEEIRWGSYVIGNDIEGLTMQMVREYIYYLGNLRSTSL 297 Query: 308 GLEPLFK-YTENP--FPWMSEVIDLKKEK-NFFETRVTEYQQGAEL 349 G L++ Y + P W+S + K +FFE R + Y + + L Sbjct: 298 GFGTLYEGYEKEPASMEWVSMYANANLIKTDFFEARSSAYAKSSAL 343 >gi|315304277|ref|ZP_07874626.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria ivanovii FSL F6-596] gi|313627356|gb|EFR96140.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria ivanovii FSL F6-596] Length = 349 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/314 (24%), Positives = 143/314 (45%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I + ++ ++ + E L + + EG+ FY+GFA +L R Sbjct: 155 IIKRNEPIME--------AYDEFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G + +I RDE H F +VI I ENP L T E + + A LE Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVEYTHEAFRHAVELETE 266 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 ++ E M +G G++ Y+++ AN+ +G+ L+ ++EN W+ D + Sbjct: 267 WSEEVM-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSENTMTWIKAYADNFTET 325 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R + Y++ Sbjct: 326 KTDFFEMRNSSYKK 339 >gi|284929768|ref|YP_003422290.1| ribonucleotide reductase, subunit beta [cyanobacterium UCYN-A] gi|284810212|gb|ADB95909.1| ribonucleotide reductase, beta subunit [cyanobacterium UCYN-A] Length = 354 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 88/339 (25%), Positives = 159/339 (46%), Gaps = 37/339 (10%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ QL ++Y WA Y N W+P ++ + D+ + + LT+DER L + Sbjct: 36 TNLMQLNDVRYSWAVGLYQQMRENFWIPQKLDITQDVTDY---SNLTEDERYAYDGILSY 92 Query: 89 FASSESLVANNIVLAIYRHLSN----PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142 +S+ NI HL N PE + Q +E +H+ ++QYII ++ + Sbjct: 93 LTFLDSIQTCNI-----PHLKNSITAPEVSLCMAEQISQEGMHNQSYQYIIETIVPPDRR 147 Query: 143 GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 +++ +RE + ++ + A Y + + P+ A+ F + F + EG++F Sbjct: 148 NQVYEFWREDKVLRSRCEFIAKIYQKYIDDPT-------AENYFTALMADF--LLEGLYF 198 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y GF +L M G A+ ++ I RDE H+ +I + + PH + ++ Sbjct: 199 YNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPHSTEQIYE--- 255 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTEN 318 M A E + + + +G+ S EQY +++AN R IGLEPL+ ++T++ Sbjct: 256 --MFDTAVNHECRWTNHIVGSNILGITESSTEQYTKYLANIRLRSIGLEPLYTGEEFTKS 313 Query: 319 PFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 P+ + D KK+ NFFE+ VT Y + + WD Sbjct: 314 PYSHLERFSDTKKDGHTKANFFESTVTSYVMSSGVSGWD 352 >gi|116326775|ref|YP_803312.1| hypothetical protein TNAV2c_gp089 [Trichoplusia ni ascovirus 2c] gi|102231783|gb|ABF70606.1| hypothetical protein [Trichoplusia ni ascovirus 2c] Length = 269 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 78/277 (28%), Positives = 130/277 (46%), Gaps = 27/277 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y A + W EV + DL+ W + L DDE+ IK L FFA+S+ +V N+V Sbjct: 2 YKKAEASFWTVEEVDLSKDLSDW---DKLKDDEKHFIKHILAFFAASDGIVNENLVERFS 58 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + E R + Q E VHS + +I + D E LFN +P I KA+WA Sbjct: 59 QEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIRDSDERDYLFNAIETLPCIKKKADWA 118 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L++ + S+ F + + F V EG++F FA I L + + G+ Sbjct: 119 LKWISSNSA------------NFAERIVAFAAV-EGIFFSGSFASIFWLKKRGLLPGLTF 165 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I RDE LH +F + N + + P+ + +L EA ++E + + +P Sbjct: 166 SNELISRDEGLHTDFACLMYNYVVQKPPN-------SRVIEILKEAVVIEKDFLTDALPV 218 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319 +G+N QY++F+A+R +++ E + +NP Sbjct: 219 RLLGMNCDLMSQYIEFVADRLLYELIGEKYYN-AKNP 254 >gi|257062099|ref|YP_003139987.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802] gi|256592265|gb|ACV03152.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802] Length = 355 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 86/335 (25%), Positives = 154/335 (45%), Gaps = 29/335 (8%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ QL ++Y WA Y N W+P + + D+ + + LTDDER L + Sbjct: 37 TNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDVTDYAN---LTDDERYAYDGILSY 93 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 +S+ NI + ++ PE + Q +E +H+ ++QYII ++ E +++ Sbjct: 94 LTFLDSVQTCNIP-HLKSSVTAPEVSLCMAEQISQEGMHNQSYQYIIETIIPPERRTQVY 152 Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 + +R + + + A Y + + P+ + + L Y++ EG++FY GF Sbjct: 153 DFWRTDKVLKERCEFIASLYQKYIDHPT--------SENYFVALMADYLL-EGLYFYNGF 203 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 +L M G A+ ++ I RDE H+ +I + + PH + + M Sbjct: 204 IYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPHSVDQIYD-----MF 258 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPW 322 A E + + + +G+ S EQY +++AN R IGL+PL+ KY ++P+ Sbjct: 259 DRAVKYECQWTNHIVGNNILGITEASTEQYTKYLANIRLRSIGLDPLYPDIKYNKSPYTH 318 Query: 323 MSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 + D KKE NFFE VT Y + + WD Sbjct: 319 LERFSDTKKEAHTKANFFEATVTSYVMSSGITGWD 353 >gi|269865122|ref|XP_002651812.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063829|gb|EED42244.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 336 Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 80/301 (26%), Positives = 131/301 (43%), Gaps = 29/301 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +HS + +I +L D+ E LFN Sbjct: 95 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA WA ++ S SF T V + EG++F FA I Sbjct: 155 NIPSIRKKALWAQKWIA--SDTSFDTRC------------VAFACVEGIFFSGSFAAIFW 200 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + H + ++ EA Sbjct: 201 LKKRGLMPGLTFSNELISRDEGLHTDFACLL---------HKYINNKCTVIEDIVREAVA 251 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + E++P +G+N QY++F+A+R +G ++ + + W + V K Sbjct: 252 IEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGERKIYTFLTHSISWKTSVCKAK 311 Query: 331 K 331 + Sbjct: 312 Q 312 >gi|218249013|ref|YP_002374384.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801] gi|218169491|gb|ACK68228.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801] Length = 344 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/335 (25%), Positives = 154/335 (45%), Gaps = 29/335 (8%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ QL ++Y WA Y N W+P + + D+ + + LTDDER L + Sbjct: 26 TNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDVTDYAN---LTDDERYAYDGILSY 82 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 +S+ NI + ++ PE + Q +E +H+ ++QYII ++ E +++ Sbjct: 83 LTFLDSVQTCNIP-HLKSSVTAPEVSLCMAEQISQEGMHNQSYQYIIETIIPPERRTQVY 141 Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 + +R + + + A Y + + P+ + + L Y++ EG++FY GF Sbjct: 142 DFWRTDKVLKERCEFIASLYQKYIDIPT--------SENYFVALMADYLL-EGLYFYNGF 192 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 +L M G A+ ++ I RDE H+ +I + + PH + + M Sbjct: 193 IYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPHSVDQIYD-----MF 247 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPW 322 A E + + + +G+ S EQY +++AN R IGL+PL+ KY ++P+ Sbjct: 248 DRAVKYECQWTNHIVGNNILGITEASTEQYTKYLANIRLRSIGLDPLYPDIKYNKSPYTH 307 Query: 323 MSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 + D KKE NFFE VT Y + + WD Sbjct: 308 LERFSDTKKEAHTKANFFEATVTSYVMSSGITGWD 342 >gi|297265423|ref|XP_001091447.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Macaca mulatta] Length = 704 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 90/331 (27%), Positives = 142/331 (42%), Gaps = 58/331 (17%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 411 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 467 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 468 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 527 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E LFN +P + KA+WAL++ G K+A + V + Sbjct: 528 YIKDPKEREFLFNAIETMPCVKKKADWALRW----------IGDKEAT---YGERVVAFA 574 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE +NQI Sbjct: 575 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEV--------SLNQI--------- 617 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 +G+N +QY++F+A+R ++G +F+ Sbjct: 618 --------------------IGXXXXXXXXIGMNCTLMKQYIEFVADRLMLELGFSKVFR 657 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 658 -VENPFDFM-ENISLEGKTNFFEKRVGEYQR 686 >gi|311977695|ref|YP_003986815.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba polyphaga mimivirus] gi|77416594|sp|Q7T6Y9|RIR2_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|55664859|gb|AAQ09571.2| ribonucleotide reductase small subunit [Acanthamoeba polyphaga mimivirus] gi|308204332|gb|ADO18133.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba polyphaga mimivirus] Length = 417 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 87/330 (26%), Positives = 151/330 (45%), Gaps = 34/330 (10%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L+ +S+ + P+KY W+ Y N+W EV + D+ W N L+DD+R I Sbjct: 101 ILSLKSEQYTVHPIKYQKVWDNYKDQMKNYWTVEEVDLAKDVNDW--NNHLSDDDRNFIM 158 Query: 84 RNLGFFASSESLVANNIV--LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 L FFA+++ +V NI L + EC Y + A E A H + ++T+ D Sbjct: 159 HVLAFFAAADGIVNANIKENLIDVVKIKEAEC-AYGFQYAMENA-HGEMYSLMLTTFVKD 216 Query: 142 EG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + +L N + +PSI KA+W ++ ++ D+ + L F +V EG Sbjct: 217 DALRNKLINSIKTMPSIKKKADWCNKWIKS-------------DKTYAHKLVAFSIV-EG 262 Query: 199 MWFYTGFAQI--LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 ++F FA I L + M G+ Q+I RDE+ H+ + + + N L Sbjct: 263 VFFSGSFASIFWLKTREMHVMPGLIISNQFIARDENKHVELACIMYSLL---NNRLKESV 319 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + ++++P +G+N+ QY++++A+R +G F Sbjct: 320 VYQIIDEAIEIEE----EFINDSLPCKLLGMNSELMSQYIKYVADRLLVDLGYRKKFN-V 374 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 +NPF +M + ID+ + NFFE R Y Sbjct: 375 DNPFEYMKK-IDVFVKANFFEKRNDAYSNA 403 >gi|23100542|ref|NP_694009.1| ribonucleotide-diphosphate reductase subunit beta [Oceanobacillus iheyensis HTE831] gi|22778775|dbj|BAC15043.1| ribonucleoside-diphosphate reductase beta subunit [Oceanobacillus iheyensis HTE831] Length = 347 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/314 (26%), Positives = 146/314 (46%), Gaps = 22/314 (7%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 ++ Y N+W EV M D+ + + + D L I L + ++ A L Sbjct: 43 YKMYKRLVGNYWQADEVNMSSDVKQFSTLSKEEQDAYLKIIGLLSTLDAPQTRTA----L 98 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKAN 160 I + ++P + + A +EAVH+ ++ Y+++S+ ++ E F + R + K N Sbjct: 99 LISLYATDPSVQSIMAVIAQQEAVHNESYSYVLSSVVSWNEQNEAFQLGR-TDELLLKRN 157 Query: 161 WAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 L QY + +PS E + V+ + EGM+FY+GFA L R NKMV Sbjct: 158 EQLTEQYNAFVDNPSM---------ENMLKTLVYTSLLEGMFFYSGFAFFYHLARQNKMV 208 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 G + YI RDE H F ++ ENP EF ++ LEI ++H Sbjct: 209 GTSTMISYINRDELEHGRFITELFRATLEENPSHNNAEFIDWIYDRFQQSVELEIEWSHY 268 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNF 335 + K G++ + Y+++ AN+ +GLE L+ ++ ENP W+ +D + +F Sbjct: 269 VLNK-LEGIDMDDMDGYIKYRANKMLRMMGLEELYPQHVENPMKWVRAYVDNFDGTKTDF 327 Query: 336 FETRVTEYQQGAEL 349 FE + +Y + ++L Sbjct: 328 FEQKSRQYTKTSDL 341 >gi|229916488|ref|YP_002885134.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium sp. AT1b] gi|229467917|gb|ACQ69689.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sp. AT1b] Length = 346 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/315 (26%), Positives = 143/315 (45%), Gaps = 22/315 (6%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y +N W+P E+ M D+ W LT+ E+ KR +G + +S V Sbjct: 34 IAYPQFYTIYKQLLSNFWIPDEISMSKDMQQWPQ---LTEREQDAFKRIIGLLSILDS-V 89 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 +L S+ L A +E VH+ ++ Y+++SL ++ +FN+ ++ Sbjct: 90 QTRYILESSMFSSDSSVHAVLAVIAQQEVVHNQSYSYVLSSLVPLAEQNRIFNIAKDDEM 149 Query: 155 ITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + + + L Y +P+ K V V+ EG+ FY+GFA +L R Sbjct: 150 VMKRNQFILDLYEAFRETPNAENFAKS---------LVASVILEGINFYSGFAYFYNLAR 200 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL-WTKEFQQKSRTMLHEATLLE 272 KMVG + YI RDE H F ++ + ENP + +F Q + EA LE Sbjct: 201 HQKMVGTSTMISYIQRDEMQHSYFISQLLRAVLTENPKIDENGQFSQFVYDTMAEAVDLE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK- 330 I + E + + GL+ Y++++AN+R IGL L++ + E+ PW+ D Sbjct: 261 IEWC-EYVLRDLDGLDVSEMRDYVKYLANKRLRVIGLNDLYEGFDEDVMPWIRAYSDDSL 319 Query: 331 --KEKNFFETRVTEY 343 + +FFE + Y Sbjct: 320 NATKSDFFEQKSRSY 334 >gi|299822182|ref|ZP_07054068.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi DSM 20601] gi|299815711|gb|EFI82949.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi DSM 20601] Length = 349 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 20/315 (6%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D + L+++ER +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKGDAKQYPE---LSEEERYAYDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + + ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNVAEYVTDPAVHANAAIIAQQEVIHNESYSYVLASITNLQNQNRIFELARTHPT 154 Query: 155 ITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 I + + Y L + T K Q + EG+ FY+GFA +L R Sbjct: 155 IIKRNQPIMDAYDDFLEHKTGETLVKSLIQS---------SILEGINFYSGFAYFYNLVR 205 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 NKM G + +I RDE H F +VI I ENP L T E + A LE Sbjct: 206 QNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVAYTHDAFRHAVELET 265 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LK 330 ++ E M +G G++ Y+++ AN+ +G+ L+ ++EN W+ D + Sbjct: 266 IWSEEVM-EGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSENTMTWIKAYADNFTE 324 Query: 331 KEKNFFETRVTEYQQ 345 + +FFE R + Y++ Sbjct: 325 TKTDFFEMRNSSYKK 339 >gi|229542075|ref|ZP_04431135.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1] gi|229326495|gb|EEN92170.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1] Length = 347 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 90/320 (28%), Positives = 151/320 (47%), Gaps = 22/320 (6%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 L Y ++ Y N+W EV M D+ K L++ E+ + + A+ +S Sbjct: 37 LAYPHWYKTYKRLLGNYWQSDEVNMSTDV---KQFPLLSEKEQETFLKIISLLATLDSSQ 93 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLD-EGELFNMYREVPS 154 I+LA + ++P + L A +EAVH+ ++ YI++S+ LD + E F + R+ P Sbjct: 94 TRTILLASL-YATDPSIQSILAVIAQQEAVHNESYSYILSSVVSLDKQNEAFEIGRKDP- 151 Query: 155 ITAKANWAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K N L QY P D E + V+ + EG++FY+GFA +L Sbjct: 152 VLLKRNKKLMEQYNAFAQQP---------DVEDIVKTLVYSTLLEGLFFYSGFAFFYNLA 202 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NKMVG + YI RDE H F ++I + E+P L T F E+ LE Sbjct: 203 RQNKMVGTSTMISYINRDELEHGRFISELIRAVLSEHPELNTPAFSDWVYARFRESVDLE 262 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVID--L 329 ++ E + + G++ ++++ AN+ IGL L+ ++ ENP W+ D Sbjct: 263 TEWS-EYVLQDVEGIDLEEMAGFIKYRANKMLRMIGLSELYPEHVENPMKWIRAYADNFD 321 Query: 330 KKEKNFFETRVTEYQQGAEL 349 + +FFE + Y + ++L Sbjct: 322 ATKTDFFEQKSRSYTKVSDL 341 >gi|56418235|gb|AAV91049.1| ribonucleotide reductase beta subunit [Grouper iridovirus] Length = 384 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/319 (25%), Positives = 138/319 (43%), Gaps = 25/319 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P KY WA + + HW+ TEV ++DD+ WKS LT E+ I L F + Sbjct: 76 PFKYSWAEDVRVKHERIHWVETEVNLRDDVTDWKS-GALTQQEKEFISCVLRLFTQLDVE 134 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVP 153 V + + + E R L A EA+H + + +LG+ + E F Y+E+ Sbjct: 135 VGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCEYSAFVAYKEMT 194 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 L + +++ + + + L EG+ + F +L+ + Sbjct: 195 D-------KLDFMKSMDVSTIPNLARSLFKAVLN---------EGVSLFAAFVMLLAFQK 238 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 +M G+ + ++ +RDE++H+ + + E P L T++ + + A LE Sbjct: 239 RGRMKGMGKVVEWSVRDENIHVEGVSRLFETLCAEYPWLMTEKLVRDCKKDAERAAELEF 298 Query: 274 AY---AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVID 328 A+ A P GL S + Y+ ++ N R +GL L +ENP PW+ +I+ Sbjct: 299 AFIDLAFSYCP-ALDGLTPSSVKNYVLYVINLRASHMGLPKLMASAPSENPLPWVKWLIE 357 Query: 329 LKKEKNFFETRVTEYQQGA 347 NFFE VTEY+ G Sbjct: 358 GADLTNFFENHVTEYETGG 376 >gi|115691069|ref|XP_001203692.1| PREDICTED: similar to ribonuleotide reductase small subunit, partial [Strongylocentrotus purpuratus] gi|115735426|ref|XP_798682.2| PREDICTED: similar to ribonuleotide reductase small subunit, partial [Strongylocentrotus purpuratus] Length = 258 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 127/295 (43%), Gaps = 50/295 (16%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W EV + +D WK L +E+ + L FFA+S+ +V N+V + + PE Sbjct: 3 WTTEEVDLGED---WKDWQKLKPEEKHFVTHVLAFFAASDGIVNENLVERFSQEVQIPEA 59 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLS 170 + + Q E +HS + +I + D E LFN + +P + KA+WAL++ + Sbjct: 60 KCFYGFQIAMENIHSEMYSLLIDTYVKDPTEKHRLFNAIQTMPFVKKKADWALKWIAS-- 117 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 D+ + V + EG++F FA I + + G+ + I RD Sbjct: 118 -----------DESTFAERLVAFAAVEGIFFSGSFAAIFWFKKRGLLPGLTFSNELISRD 166 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E LH +F + + + P + + ++ +A LE Y E +P +G+NA Sbjct: 167 EGLHCDFACLLFSHLNHPTP-------VSRIQEIIRDAVRLEEEYLSEALPVALIGMNAR 219 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 QY+QF+A+R ++ + NFFE RV EYQ+ Sbjct: 220 LMCQYIQFVADRLLMEL------------------------KSNFFEKRVGEYQK 250 >gi|308067265|ref|YP_003868870.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] gi|305856544|gb|ADM68332.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] Length = 343 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 141/298 (47%), Gaps = 19/298 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 NHW+P E+PM D + + L +E+ K N+G A +S+ V + R+ ++ Sbjct: 47 NHWIPDEIPMSKDASQFPV---LDAEEQRTFKINIGLLAVLDSM-QTMFVGDVKRYFTDS 102 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169 +E VH+ ++ Y+++SL D+ E+F ++ P + + + Q Sbjct: 103 SLEAISAIIGQQEVVHNQSYSYVLSSLVSDQEQKEIFEYWKNDPVLLERNTFISDIYQEF 162 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + Q F Q + V ++ EG++FY+ FA +L R KM+ ++ YI R Sbjct: 163 RD-------EQNPQTFFQAM-VADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQR 214 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE+ H F +V Q+ + P L TKE M++ A LE +AH T+ K G++ Sbjct: 215 DENQHCYFFAEVFKQLLSDFPELNTKENTDYVYRMINRAVELETNWAHYTL-KEVRGIDL 273 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEK-NFFETRVTEY 343 Y++++AN R +G++ ++ + N PW+ D L K +FFE + Y Sbjct: 274 NELSDYIKYMANMRLRLLGMDKAYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNY 331 >gi|285016983|ref|YP_003374694.1| ribonucleotide-diphosphate reductase beta subunit protein [Xanthomonas albilineans GPE PC73] gi|283472201|emb|CBA14708.1| probable ribonucleotide-diphosphate reductase beta subunit protein [Xanthomonas albilineans] Length = 346 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/314 (24%), Positives = 141/314 (44%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D K L+ E+ +G A+ +S Sbjct: 36 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---KQYGELSAREKNAYDSIIGLLATLDS-P 91 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 92 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASIAGLADQNRVFEIARTHPT 151 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I A+ +Q ++ ++ E L + + EG+ FY+GFA +L R Sbjct: 152 IVARNQPIMQ--------AYDDFMREKTAETLLRSLIQSSILEGINFYSGFAYFYNLVRQ 203 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I EN L T E A LE Sbjct: 204 NRMTGTGKIISFINRDELAHTKFISELIRAIIGENAELQTNELTDYVHQAFEHAIRLETE 263 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 ++ E + G G++ QY+++ AN+ +G+E L+ ++N PW+ D + Sbjct: 264 WSSEVL-DGIEGIDVDEMIQYVKYRANKMSGMLGIEKLYTGASDNVMPWIKAYADNFTET 322 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 323 KTDFFEMRNASYKK 336 >gi|16804193|ref|NP_465678.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes EGD-e] gi|116873587|ref|YP_850368.1| ribonucleotide-diphosphate reductase subunit beta [Listeria welshimeri serovar 6b str. SLCC5334] gi|217963685|ref|YP_002349363.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes HCC23] gi|224500181|ref|ZP_03668530.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes Finland 1988] gi|224501047|ref|ZP_03669354.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL R2-561] gi|254826956|ref|ZP_05231643.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL N3-165] gi|254831409|ref|ZP_05236064.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 10403S] gi|255028522|ref|ZP_05300473.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes LO28] gi|284802601|ref|YP_003414466.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5578] gi|284995743|ref|YP_003417511.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5923] gi|290893101|ref|ZP_06556089.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J2-071] gi|16411624|emb|CAD00232.1| lmo2154 [Listeria monocytogenes EGD-e] gi|116742465|emb|CAK21589.1| ribonucleoside-diphosphate reductase beta chain [Listeria welshimeri serovar 6b str. SLCC5334] gi|217332955|gb|ACK38749.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes HCC23] gi|258599337|gb|EEW12662.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL N3-165] gi|284058163|gb|ADB69104.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5578] gi|284061210|gb|ADB72149.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5923] gi|290557263|gb|EFD90789.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J2-071] gi|307571740|emb|CAR84919.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes L99] Length = 349 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/314 (23%), Positives = 143/314 (45%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I + + ++ + E L + + EG+ FY+GFA +L R Sbjct: 155 IIKRNEPIMD--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G + +I RDE H F +VI I ENP L T+E + + A LE Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHEAFRHAVELETE 266 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W+ D + Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTET 325 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R + Y++ Sbjct: 326 KTDFFEMRNSSYKK 339 >gi|46908387|ref|YP_014776.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes serotype 4b str. F2365] gi|47091823|ref|ZP_00229618.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 4b H7858] gi|226224761|ref|YP_002758868.1| ribonucleoside-diphosphate reductase, subunit beta [Listeria monocytogenes Clip81459] gi|254825283|ref|ZP_05230284.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J1-194] gi|254853280|ref|ZP_05242628.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL R2-503] gi|254931734|ref|ZP_05265093.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes HPB2262] gi|255519998|ref|ZP_05387235.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J1-175] gi|300764038|ref|ZP_07074034.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes FSL N1-017] gi|46881658|gb|AAT04953.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47019834|gb|EAL10572.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 4b H7858] gi|225877223|emb|CAS05937.1| Putative ribonucleoside-diphosphate reductase, subunit beta [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606640|gb|EEW19248.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL R2-503] gi|293583289|gb|EFF95321.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes HPB2262] gi|293594529|gb|EFG02290.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J1-194] gi|300515379|gb|EFK42430.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes FSL N1-017] gi|313617790|gb|EFR90013.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria innocua FSL S4-378] gi|328465961|gb|EGF37142.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 1816] gi|328472177|gb|EGF43048.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 220] gi|332312605|gb|EGJ25700.1| Ribonucleoside-diphosphate reductase [Listeria monocytogenes str. Scott A] Length = 349 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/314 (23%), Positives = 143/314 (45%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I + + ++ + E L + + EG+ FY+GFA +L R Sbjct: 155 IIKRNEPIMD--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G + +I RDE H F +VI I ENP L T+E + + A LE Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHDAFRHAVELETE 266 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W+ D + Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTET 325 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R + Y++ Sbjct: 326 KTDFFEMRNSSYKK 339 >gi|16801322|ref|NP_471590.1| ribonucleotide-diphosphate reductase subunit beta [Listeria innocua Clip11262] gi|16414770|emb|CAC97486.1| lin2258 [Listeria innocua Clip11262] Length = 349 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/314 (23%), Positives = 143/314 (45%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I + + ++ + E L + + EG+ FY+GFA +L R Sbjct: 155 IIKRNEPIM--------AAYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G + +I RDE H F +VI I ENP L T+E + + A LE Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHDAFRHAVELETE 266 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W+ D + Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTET 325 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R + Y++ Sbjct: 326 KTDFFEMRNSSYKK 339 >gi|313622843|gb|EFR93161.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria innocua FSL J1-023] Length = 349 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/314 (23%), Positives = 143/314 (45%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I + + ++ + E L + + EG+ FY+GFA +L R Sbjct: 155 IIKRNEPIMT--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G + +I RDE H F +VI I ENP L T+E + + A LE Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHDAFRHAVELETE 266 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W+ D + Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTET 325 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R + Y++ Sbjct: 326 KTDFFEMRNSSYKK 339 >gi|47095728|ref|ZP_00233334.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 1/2a F6854] gi|254899145|ref|ZP_05259069.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes J0161] gi|254912714|ref|ZP_05262726.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818] gi|254937041|ref|ZP_05268738.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes F6900] gi|47015871|gb|EAL06798.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 1/2a F6854] gi|258609644|gb|EEW22252.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes F6900] gi|293590709|gb|EFF99043.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818] Length = 349 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 74/314 (23%), Positives = 144/314 (45%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D + + L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDAKQYPT---LSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I + + ++ + E L + + EG+ FY+GFA +L R Sbjct: 155 IIKRNEPIMD--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G + +I RDE H F +VI I ENP L T+E + + A LE Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHEAFRHAVELETE 266 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W+ D + Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTET 325 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R + Y++ Sbjct: 326 KTDFFEMRNSSYKK 339 >gi|109287926|ref|YP_654620.1| hypothetical protein MIV048L [Invertebrate iridescent virus 3] gi|123878658|sp|Q197B2|RIR2_IIV3 RecName: Full=Probable ribonucleoside-diphosphate reductase small subunit 048L; AltName: Full=Ribonucleotide reductase small subunit gi|106073549|gb|ABF82078.1| hypothetical protein MIV048L [Aedes taeniorhynchus iridescent virus] Length = 376 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/326 (23%), Positives = 148/326 (45%), Gaps = 11/326 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +D P +Y ++K+ + + HW E+ MQDD+ W N L++ E+ + + L F Sbjct: 48 ADRTTFKPFEYPGCYDKWDTHEHAHWSFKELNMQDDVHDWH--NRLSEAEKTFLVQILRF 105 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 F + VA V + + PE R L EA+H ++ ++I++L L + + Sbjct: 106 FTQGDVDVAVGYVQYL-QLFQQPEVRMMLFSFGAREAMHIASYSHLISTLNLPDVT-YQE 163 Query: 149 YREVPSITAKANWAL--QYTQTLSSPSFTT---GTKDADQEFLQDLFVFYVVFEGMWFYT 203 + + ++ K + ++ T F G +E + +F EG+ ++ Sbjct: 164 FLKYKAMKDKHEFVFNSRFKSTTVGRFFNYLLFGYDTHLEEIAVKIALFSAFIEGVQLFS 223 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSR 262 F +L+ R M + + Q+ + DE+ H N +++ + + +EN H+ + + R Sbjct: 224 SFIMLLNFTRHGLMKKMGQIIQWSIADETHHTNSMMELFSTLVVENKSHIRLGVLEARVR 283 Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 + LE + G L A + Y+++I NRR +G PL+ ENP P Sbjct: 284 DTARKIVQLEDGFIDLAFSMGEMRQLTADDVKSYIRYITNRRLQTMGYLPLYSVVENPLP 343 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA 347 W+ ++++ NFFE + TEY + + Sbjct: 344 WVEDLLNAPSHTNFFENKPTEYAKAS 369 >gi|242012701|ref|XP_002427066.1| Ribonucleoside-diphosphate reductase M2 subunit, putative [Pediculus humanus corporis] gi|212511324|gb|EEB14328.1| Ribonucleoside-diphosphate reductase M2 subunit, putative [Pediculus humanus corporis] Length = 304 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/307 (25%), Positives = 141/307 (45%), Gaps = 34/307 (11%) Query: 17 VNVDDKRMLNA------RSDVNQ--LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 +NV+D R+ N + ++ + + P+++ W Y A + W EV + DL W Sbjct: 19 INVNDSRVFNKEIEPLLKENIKRFVIFPIEFPDIWHMYKKAEASFWTVEEVDLSKDLEHW 78 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L ER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 79 ER---LKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVSEARCFYGFQIAMENVHS 135 Query: 129 HTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 + +I + + E LFN +P + KA+WAL++ S T T F Sbjct: 136 EMYSLLIDTYIKNPTEKHFLFNAIETMPCVKKKADWALKWI------SHKTAT------F 183 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 + + F V EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 184 AERVVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKYV 242 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 ++ P + + ++ +A +E + E +P +G+N ++Y++F+A+R Sbjct: 243 -VQKPT------EDEICDIIKDAVAIEQEFLTEALPVNLIGMNCSLMKKYIEFVADRLLV 295 Query: 306 QIGLEPL 312 ++G + + Sbjct: 296 ELGCKKV 302 >gi|289435502|ref|YP_003465374.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171746|emb|CBH28292.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632343|gb|EFR99385.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria seeligeri FSL N1-067] gi|313636848|gb|EFS02469.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria seeligeri FSL S4-171] Length = 349 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/314 (23%), Positives = 143/314 (45%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQKRVFELARTHPT 154 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I + + ++ + E L + + EG+ FY+GFA +L R Sbjct: 155 IIKRNEPIMD--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G + +I RDE H F +VI I ENP L T+E + + A LE Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHEAFRHAVDLETE 266 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W+ D + Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTET 325 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R + Y++ Sbjct: 326 KTDFFEMRNSSYKK 339 >gi|126654703|ref|ZP_01726237.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110] gi|126623438|gb|EAZ94142.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110] Length = 352 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 85/335 (25%), Positives = 155/335 (46%), Gaps = 29/335 (8%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ QL ++Y WA Y N W+P + + D+ + + LTDDER L + Sbjct: 34 TNLMQLNDVRYAWAVGLYQQMRENFWIPQRLDVTQDVTDYAN---LTDDERYAYDGILSY 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 +S+ NI + ++ PE + Q +E +H+ ++QY+I ++ E +++ Sbjct: 91 LTFLDSVQTCNIP-HLKSSITAPEISLCMAEQISQEGMHNQSYQYLIETIIPPERRTQVY 149 Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 +R + + + A Y + + P+ ++ F+ + F + EG++FY GF Sbjct: 150 EFWRTDTVLKDRCEFIAKLYQKYIDDPT-------SENYFIALMADF--LLEGLYFYNGF 200 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 +L M G A+ ++ I RDE H+ +I + + PH + ++ M Sbjct: 201 IYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPHSVEQIYE-----MF 255 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPW 322 A E + + + +G+ S E+Y +++AN R IGLEPL+ KY ++P+ Sbjct: 256 DMAVNYECRWTNHIVGNNILGITESSTEKYTKYLANIRLRSIGLEPLYPEPKYNKSPYTH 315 Query: 323 MSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 + D KKE NFFE VT Y + + WD Sbjct: 316 LERFSDTKKEAHTKANFFEATVTSYVMSSGVTGWD 350 >gi|315283233|ref|ZP_07871471.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria marthii FSL S4-120] gi|313613124|gb|EFR87028.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria marthii FSL S4-120] Length = 349 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/314 (23%), Positives = 143/314 (45%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L+++E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPNLSEEEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIGQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I + ++ ++ + E L + + EG+ FY+GFA +L R Sbjct: 155 IIKRNEPIME--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G + +I RDE H F +VI I ENP L T E + + A LE Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVEYTHEAFRHAVELETE 266 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W+ D + Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTET 325 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R + Y++ Sbjct: 326 KTDFFEMRNSSYKK 339 >gi|218442220|ref|YP_002380549.1| ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424] gi|218174948|gb|ACK73681.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424] Length = 355 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 87/336 (25%), Positives = 157/336 (46%), Gaps = 31/336 (9%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA-LWKSKNGLTDDERLMIKRNLG 87 +++ QL ++Y WA Y N W+P + + D+ W LTD+ER L Sbjct: 37 TNLMQLNDVRYNWAVGLYKQMRENFWIPERLDITQDVTDYW----NLTDEERYAFDGILS 92 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII-TSLGLDE-GEL 145 + +S+ NI + ++ PE + Q +E +H+ +QY+I T + L++ ++ Sbjct: 93 YLTFLDSIQTCNIP-HLKSSVTAPEISLCMAEQISQEGMHNQAYQYMIETIIPLEKRNQV 151 Query: 146 FNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 ++ +R + A+ + A Y + + +PS + + L Y++ EG++FY G Sbjct: 152 YDFWRTDKVLKARCEFIAGLYQKYIDTPSI--------ENYFVALMADYLL-EGLYFYNG 202 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 F +L M G A+ ++ I RDE H+ +I + PH + ++ M Sbjct: 203 FIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQRIIVEAMETFPHSVEQIYE-----M 257 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFP 321 A E + + + +G+ S EQY +++AN R + IGL+PL+ KY ++P+ Sbjct: 258 FDTAVQHECRWTNHIVGDNILGITESSTEQYTKYLANHRLNTIGLKPLYEDEKYKKSPYS 317 Query: 322 WMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 + D KK+ NFFE VT Y + + WD Sbjct: 318 HLERFSDTKKDAHTKANFFEATVTSYVMSSGVTGWD 353 >gi|119485472|ref|ZP_01619800.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106] gi|119457228|gb|EAW38354.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106] Length = 359 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 87/358 (24%), Positives = 167/358 (46%), Gaps = 30/358 (8%) Query: 7 LSPIQAGEKRVNVDDKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 ++PI E +V+++ + +++ QL ++Y WA Y N W+P ++ + D+ Sbjct: 18 INPIFNPEGNDHVENRSIWFGDTTNLMQLNDVRYPWAVGLYKQMRENFWVPEKLDITQDV 77 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + LT DER L + +S+ NI + ++ PE + Q +EA Sbjct: 78 VDY---GNLTTDERRAFDGILSYLTFLDSIQTCNIP-HLKSSITAPEISLCMAEQVSQEA 133 Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQT-LSSPSFTTGTKDAD 182 +H+ ++QY+I ++ + ++ +R + + + ++ Q + +P+ ++ Sbjct: 134 MHNQSYQYMIETIIPSDRRSFVYEFWRTDSVLHNRCEYIARFYQNYIDNPT-------SE 186 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 F+ L F + EG++FY GF +L M G A+ ++ I RDE H+ +I Sbjct: 187 NYFVALLADF--LLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLI 244 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 + PH + ++ M A E + + + + +G+ S EQY +++AN Sbjct: 245 PEAMQTFPHSVEQIYE-----MFDTAVQHECRWTNHIVGRNILGITETSTEQYTKYLANA 299 Query: 303 RCHQIGLEPLF---KYTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAEL-KWD 352 R IGL+PL+ +Y+++P+ + D KKE NFFE VT Y + + WD Sbjct: 300 RLRSIGLKPLYTDPRYSKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVGGWD 357 >gi|326483608|gb|EGE07618.1| hypothetical protein TEQG_06532 [Trichophyton equinum CBS 127.97] Length = 317 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 122/275 (44%), Gaps = 33/275 (12%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++A E R+ + +R + L P+KY W+ Y A + W E+ + D+ W Sbjct: 73 LEAEEPRLQENPQRFV--------LFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L DDER I L FFA+S+ +V N++ + PE R + Q E +HS Sbjct: 125 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182 Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 T+ +I + ++ + LF +P I KA+WA+++ Q D + F Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKNSTFS 230 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 Q L F V EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 231 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS--- 286 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 HL + ++ EA +E + + +P Sbjct: 287 ----HLNYRPDPNAVEAIITEAVTIEQEFLTDALP 317 >gi|310639978|ref|YP_003944736.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] gi|309244928|gb|ADO54495.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] Length = 343 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 141/298 (47%), Gaps = 19/298 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 NHW+P E+PM D + + L +E+ K N+G A +S+ V + R+ ++ Sbjct: 47 NHWIPDEIPMSKDASQFPM---LDAEEQRTFKINIGLLAVLDSM-QTMFVGDVKRYFTDS 102 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 +E VH+ ++ Y+++SL ++ E+F ++ P + + + Q Sbjct: 103 SLEAISAIIGQQEVVHNQSYSYVLSSLVSEQEQKEIFEYWKNDPVLLERNTFISAIYQEF 162 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + Q F Q + V ++ EG++FY+ FA +L R KM+ ++ YI R Sbjct: 163 RD-------EQNPQTFFQAM-VADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQR 214 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE+ H F +V Q+ + P L TKE M++ A LE +AH T+ K G++ Sbjct: 215 DENQHCYFFAEVFKQLLADFPELNTKENMDYVYRMINRAVELETNWAHYTL-KEVRGIDL 273 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEK-NFFETRVTEY 343 Y++++AN R +G++ ++ + N PW+ D L K +FFE + Y Sbjct: 274 NELSDYIKYMANMRLRLLGMDKAYEGVDINSMPWIKPFSDEALNATKTDFFEAKSRNY 331 >gi|307151334|ref|YP_003886718.1| ribonucleotide reductase [Cyanothece sp. PCC 7822] gi|306981562|gb|ADN13443.1| ribonucleotide reductase [Cyanothece sp. PCC 7822] Length = 355 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 88/336 (26%), Positives = 155/336 (46%), Gaps = 31/336 (9%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA-LWKSKNGLTDDERLMIKRNLG 87 +++ QL ++Y WA Y N W+P + + D+ W LT+DER + L Sbjct: 37 TNLMQLNDVRYTWAVGLYKQMRENFWIPERLDITQDVTDYW----NLTEDERYAFEGILS 92 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII-TSLGLDE-GEL 145 + +S+ NI + ++ PE + Q +E +H+ +QY+I T + L+ E+ Sbjct: 93 YLTFLDSVQTCNIP-HLKASVTAPEISLCMAEQISQEGMHNQAYQYMIETIIPLERRSEV 151 Query: 146 FNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 ++ +R + A+ + A Y + ++ P+ + L Y++ EG++FY G Sbjct: 152 YDFWRTDKVLKARCEFIAGLYQKYINQPNI--------DNYFTALMADYLL-EGLYFYNG 202 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 F +L M G A+ ++ I RDE H+ +I + PH K ++ M Sbjct: 203 FIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKIIAEAMQTFPHSVDKVYE-----M 257 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFP 321 A E + + + +G+ S EQY +++AN R IGL+PL+ KY ++P+ Sbjct: 258 FDTAVHHECRWTNHIVGDNILGITESSTEQYTKYLANIRLKAIGLKPLYADEKYQKSPYS 317 Query: 322 WMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 + D KK+ NFFE VT Y + + WD Sbjct: 318 HLERFSDTKKDAHTKANFFEATVTSYVMSSGVTGWD 353 >gi|269862698|ref|XP_002650940.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220065381|gb|EED43116.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 332 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 130/293 (44%), Gaps = 30/293 (10%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 66 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 122 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +HS + +I +L D+ E LFN Sbjct: 123 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 182 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA WA ++ S SF T V + EG++F FA I Sbjct: 183 NIPSIRKKALWAQKWIA--SDTSFDTRC------------VAFACVEGIFFSGSFAAIFW 228 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + H + ++ EA Sbjct: 229 LKKRGLMPGLTFSNELISRDEGLHTDFACLL---------HKYINNKCTVIEDIVREAVA 279 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +E + E++P +G+N QY++F+A+R +G + ++ + PF +M Sbjct: 280 IEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-TPFDFM 331 >gi|167461830|ref|ZP_02326919.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383591|ref|ZP_08057349.1| ribonucleotide-diphosphate reductase subunit beta-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152059|gb|EFX44995.1| ribonucleotide-diphosphate reductase subunit beta-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 343 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 152/312 (48%), Gaps = 20/312 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 ++ Y NHW+P+E+PM D ++ LT E+ K+ +G A +S+ N V Sbjct: 39 YKLYKVLIANHWIPSEIPMNKDKLQFEQ---LTAQEQETYKKIIGLLAVLDSM-QTNFVT 94 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 + + ++ +E +H+ ++ Y+++S+ E E+F +++ + + Sbjct: 95 DVGNYFTDSSLVAIAAIINQQEVIHNQSYSYVLSSITNYEVQKEVFEYWKKDEILLERNL 154 Query: 161 WALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 + + Y + P+ T F + + V ++ EG++FY+GFA L R KM+G Sbjct: 155 FIAELYQRFRDEPTPAT--------FFEAV-VADMILEGIFFYSGFAFFYHLARQQKMLG 205 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 ++ YI RDE+ H F +V + + P L T E Q + +A LE +AH Sbjct: 206 TSQMISYIQRDEAQHAYFFGEVFKLLLTDFPELNTSERIQYVYDTIDQAVKLEEKWAHYV 265 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID--LKKEK-NFF 336 + + G++ +Y++FIAN+R +GL+P ++ +N PW+ D L + K +FF Sbjct: 266 LNQ-IDGIDLDDFSRYIRFIANKRLKTMGLQPAYEGVDNCMPWIRPFSDEALNQTKTDFF 324 Query: 337 ETRVTEYQQGAE 348 E + Y + ++ Sbjct: 325 EAKSRTYAKVSD 336 >gi|56692684|ref|YP_164142.1| ribonucleoside-diphosphate reductase beta subunit [Singapore grouper iridovirus] gi|42517396|gb|AAS18062.1| ribonucleoside-diphosphate reductase beta subunit [Singapore grouper iridovirus] Length = 384 Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 80/319 (25%), Positives = 138/319 (43%), Gaps = 25/319 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P KY WA + + HW+ TEV ++DD+ WKS L+ E+ I L F + Sbjct: 76 PFKYSWAEDIRVKHERIHWVETEVNLRDDVTDWKS-GALSQQEKEFISCVLRLFTQLDVE 134 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVP 153 V + + + E R L A EA+H + + +LG+ + E F Y+E+ Sbjct: 135 VGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCEYSAFVAYKEMT 194 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 L + +++ + + + L EG+ + F +L+ + Sbjct: 195 D-------KLDFMKSMDVSTIPNLARSLFKAVLN---------EGVSLFAAFVMLLAFQK 238 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 +M G+ + ++ +RDE++H+ + + E P L T++ + + A LE Sbjct: 239 KGRMKGMGKVVEWSVRDENIHVEGVSRLFETLCAEYPWLMTEKLVRDCKKDAERAAELEF 298 Query: 274 AY---AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVID 328 A+ A P GL S + Y+ ++ N R +GL L +ENP PW+ +I+ Sbjct: 299 AFIDLAFSYCP-ALDGLTPSSVKNYVLYVINLRASHMGLPKLMASAPSENPLPWVKWLIE 357 Query: 329 LKKEKNFFETRVTEYQQGA 347 NFFE VTEY+ G Sbjct: 358 GADLTNFFENHVTEYETGG 376 >gi|417659|sp|P32209|RIR2_SWPVK RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|347472|gb|AAC37857.1| ribonucleotide reductase [Swinepox virus] Length = 274 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 27/280 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W+ Y + + W EV + DL W + LT DE+ IK L FFASS+ Sbjct: 14 IFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYFIKHILAFFASSD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ Y + E R + Q E +HS + +I + D E LFN Sbjct: 71 GIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRDNIEKMHLFNAIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KA+WA ++ + + + V + EG++F FA I Sbjct: 131 TMECVKKKADWARKWISS--------------NKVYGERVVAFAAVEGIFFSGSFAAIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + + M G+ + I RDE LH +F + HL ++ +++ +A Sbjct: 177 IKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSKEVITSIIIDAVN 229 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 +E + +P +G+N QY++F+A+R ++G E Sbjct: 230 IEKEFLTVAIPVDLIGMNCCLMSQYIEFVADRLLTELGCE 269 >gi|51869996|ref|YP_073549.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate China] gi|51858204|gb|AAU10888.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate China] Length = 374 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 85/317 (26%), Positives = 138/317 (43%), Gaps = 25/317 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA E N HW E+ + DD+ WK L D E+ I + L F + Sbjct: 73 PFHYPWAVELRSLHENMHWTEKEISLADDVTDWKI-GKLLDVEKKFITQILRLFTQLDVS 131 Query: 96 VA---NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +N + I++ N E R L A E H + + +LGL E + ++ + + Sbjct: 132 VGQLYHNTFIPIFK---NNEIRNMLCSFACREGTHQQAYALLNDTLGLPESD-YSAFLKY 187 Query: 153 PSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 +T K ++ + T T+ + +F+ V V EG+ + F +L+ Sbjct: 188 KQMTDKTDFMSDMRTDTIGNVAFS--------------LVKAVYNEGVSLFAAFVMLLNF 233 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 R M G+ + ++ +RDE++H+ + I E P + TK+F + T+ E L Sbjct: 234 QRFGVMKGMGKVVEWSIRDENVHVEGLCKLFKTIVSEYPFILTKDFYKAVETLQQEVLKL 293 Query: 272 EIAYAHET-MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E A+ + L Y+++I RR Q+GL +NP W+S +I + Sbjct: 294 ETAFVDLVFIEDKLKNLKRVDVINYVKYILQRRTVQLGLSNKTD-LQNPILWVSWLISGR 352 Query: 331 KEKNFFETRVTEYQQGA 347 NFFE RVTEY G Sbjct: 353 DVTNFFENRVTEYDVGG 369 >gi|159030376|emb|CAO91271.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 355 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 87/335 (25%), Positives = 153/335 (45%), Gaps = 29/335 (8%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ QL ++Y W+ Y N W+P + + D+ + LTD+ER L + Sbjct: 37 TNLMQLNDVRYTWSVGLYQQMRENFWIPQRLDITQDVTEY---GHLTDEERYAYDGILSY 93 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 +S+ NI + ++ PE + Q +EA+H+ ++QY+I ++ + GE++ Sbjct: 94 LTFLDSVQTCNIP-HLKGSVTAPEISLCMAEQISQEAMHNQSYQYLIETIIPSDRRGEVY 152 Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 + +R + + + A Y Q + K + + L Y++ E ++FY GF Sbjct: 153 DFWRTDKVLKDRCEFIASLYQQYID--------KQTTESYFIALLADYLL-ESLYFYNGF 203 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 +L M G A+ ++ I RDE H+ +I + PH + ++ M Sbjct: 204 IFFYNLASRQLMSGSADVFKMINRDELSHVRLYQKLIPEAMAIFPHSVEQIYE-----MF 258 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPW 322 A E + + + +G+ S EQY +++AN R IGLEPL+ KY ++P+ Sbjct: 259 DSAVKHECCWTNHIVGNDILGITEYSTEQYTKYLANIRLKAIGLEPLYREEKYNKSPYNH 318 Query: 323 MSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 + D KKE NFFE VT Y + L WD Sbjct: 319 LERFSDTKKEGHTKANFFEATVTSYVMSSGLTGWD 353 >gi|253574542|ref|ZP_04851883.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251846247|gb|EES74254.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 343 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/298 (26%), Positives = 139/298 (46%), Gaps = 19/298 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 NHW+ E+PM D + L +E+ K N+ A +S+ V + R+ ++ Sbjct: 47 NHWIADEIPMAKDAQQFAL---LDPEEQRTFKINISLLAVLDSM-QTMFVGDVKRYFTDS 102 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 +E VH+ ++ Y+++S+ ++ E+F ++ P + + + Q Sbjct: 103 SLEAISAIIGQQEVVHNQSYSYVLSSIVSEQEQKEIFEYWKHDPVLLDRNKFIANIYQNF 162 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + Q F + L V ++ EG++FY+ FA +L R KM+G ++ YI R Sbjct: 163 RD-------EPTPQSFFEAL-VADLILEGIFFYSTFAFFYNLARDQKMMGTSQMISYIQR 214 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE+ H F +V Q+ I+ P L TKE + + A LE +AH T+ K G++ Sbjct: 215 DENQHCYFFAEVFKQLLIDYPELNTKENIDYAYRTIDRAVELETNWAHYTL-KNVPGIDL 273 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEK-NFFETRVTEY 343 Y+++IAN+R +GLE + + N PW+ D L K +FFE + Y Sbjct: 274 NELSDYIKYIANKRLTLMGLEKAYAGVDINCMPWIKPFSDEALNATKTDFFEAKSRNY 331 >gi|125554800|gb|EAZ00406.1| hypothetical protein OsI_22421 [Oryza sativa Indica Group] Length = 244 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 115/240 (47%), Gaps = 26/240 (10%) Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYREVPSITAKANWALQYTQ 167 E R + Q E +HS + ++ + G ++ LF VP++ KA+WA+++ Sbjct: 7 AEARAFYGFQIAIENIHSEMYSLLLETYIRDGAEKDRLFRAIDTVPAVRRKADWAMRWI- 65 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + F + L F V EG++F F I L + M G+ + I Sbjct: 66 ------------DGGERFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELI 112 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE LH +F + + ++ K + + R ++ +A +E + + +P VG+ Sbjct: 113 SRDEGLHCDFACLLYDLLR-------GKLDEARVREIVADAVDIEREFVCDALPVALVGM 165 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 N QY++F+A+R +G + ++ NPF WM E+I L+ + NFFE RV +YQ+ + Sbjct: 166 NGDLMSQYIEFVADRLLMALGCKKMYN-VANPFDWM-ELISLQGKTNFFEKRVGDYQKAS 223 >gi|297582631|ref|YP_003698411.1| ribonucleoside-diphosphate reductase [Bacillus selenitireducens MLS10] gi|297141088|gb|ADH97845.1| Ribonucleoside-diphosphate reductase [Bacillus selenitireducens MLS10] Length = 347 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 77/310 (24%), Positives = 142/310 (45%), Gaps = 14/310 (4%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y ++ Y + N W E+ MQDD+ W D L I L S ++ Sbjct: 37 IAYPHMYDLYQTLLANFWKAQEINMQDDIKQWAELTPAEQDVFLRINTQLASLDSLQTPT 96 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 + ++ ++++P + A +EAVH+ ++ Y+++SL +++ E ++E Sbjct: 97 MSQVM----DYVTDPSFKAIFAIVAQQEAVHNESYSYVLSSL-VNQQEQTRRFQE----- 146 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 AK + +Q + ++ + + L +L V + EG++FY GFA L R K Sbjct: 147 AKEDPLIQRRNDVILSAYERFRQHPSPQHLFELAVQSLNLEGVYFYAGFAFFYHLARQQK 206 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 M+ + YI RDE H F + + ++P L T+E Q + A LE +A Sbjct: 207 MMKTSTMISYIQRDEMQHAYFMSQFVRILLTDHPELNTRENVQYVYDAMASAAGLEQEWA 266 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM---SEVIDLKKEK 333 + G++ Y++++ N+R Q+GL LF +NP PW+ S+ + + + Sbjct: 267 -AVILADIDGIDLGEFNGYVEYLVNKRLRQLGLSNLFPERDNPMPWIHVFSDTMMNQTKS 325 Query: 334 NFFETRVTEY 343 +FFE + Y Sbjct: 326 DFFEQKSRSY 335 >gi|156564205|ref|YP_001429715.1| nrd beta subunit [Bacillus phage 0305phi8-36] gi|154622902|gb|ABS83782.1| nrd beta subunit [Bacillus phage 0305phi8-36] Length = 352 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/278 (28%), Positives = 126/278 (45%), Gaps = 23/278 (8%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W P E+ M++D +W S + D L + L S + +L + R +N Sbjct: 57 NFWRPVEIKMKEDEKMWDSLTPIEQDTFLRVGTALACLDSLQV----KAILEVIRFTTNS 112 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQ-YTQT 168 A +EA H+ ++ YI +SL + + FN + P + + L Y Sbjct: 113 ALANISAFIAQQEATHTTSYSYITSSLVRLPVQNQYFNETMKHPVLAKRNKLVLDVYEDF 172 Query: 169 LSSPSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 +PS LQ+LF V + EG++FY+GFA L KM+ + Sbjct: 173 AENPS------------LQNLFRMLVQSINLEGIYFYSGFAFFYWLASQQKMMKSSTMIS 220 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 YI RDE H F +I ++ ENP L T+E Q L EA E +A E + Sbjct: 221 YIQRDEMQHAYFIGLLIRRLLTENPELNTQENAQYIVDSLKEAVATEKEWAGEIL-ADIE 279 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 GL+ + Y++++AN+R Q+G++ +++ NP PW+ Sbjct: 280 GLDLEEFDHYIEYLANKRVRQLGMDNIYEERGNPMPWI 317 >gi|255026984|ref|ZP_05298970.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J2-003] Length = 336 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/307 (24%), Positives = 137/307 (44%), Gaps = 21/307 (6%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I + + ++ + E L + + EG+ FY+GFA +L R Sbjct: 155 IIKRNEPIMD--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G + +I RDE H F +VI I ENP L T+E + + A LE Sbjct: 207 NKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHEAFRHAVELETE 266 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKEK 333 ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W+ D Sbjct: 267 WSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYAD----- 320 Query: 334 NFFETRV 340 NF ET+ Sbjct: 321 NFTETKT 327 >gi|172058301|ref|YP_001814761.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium sibiricum 255-15] gi|171990822|gb|ACB61744.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sibiricum 255-15] Length = 347 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 79/316 (25%), Positives = 143/316 (45%), Gaps = 20/316 (6%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y +N W+P E+ M D+ W N L++ E+ KR +G + +S V Sbjct: 35 IAYPQFYSIYKQLLSNFWIPDEISMSKDMQQW---NQLSEREQDAFKRIIGLLSILDS-V 90 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 +L S+ L A +E VH+ ++ Y+++SL ++ +F++ ++ Sbjct: 91 QTRYILESAMFTSDASIHAILAIVAQQEVVHNQSYSYVLSSLVPLSEQNRIFDIAKDDDM 150 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + + L + + D E V +V EG+ FY+GFA +L R Sbjct: 151 VMKRNAFILDLYEDFQN--------DRTPENFAKSLVASIVLEGINFYSGFAFFYNLARH 202 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEI 273 KMVG + YI RDE H F ++ + E+P + F + A LEI Sbjct: 203 QKMVGTSTMISYIQRDELQHSYFISQLLRAVLTEHPDIDADGSFTKFVYATFERAVDLEI 262 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK-- 330 ++ E + + GL+ Y++++AN+R IGL+ L++ + E+ PW+ D Sbjct: 263 EWS-EYVLRDLDGLDVSEMRDYVKYLANKRLRVIGLDDLYEGHDEDVMPWIRAYSDDSMN 321 Query: 331 -KEKNFFETRVTEYQQ 345 + +FFE + Y + Sbjct: 322 ATKSDFFEQKSRSYAK 337 >gi|319785673|ref|YP_004145148.1| ribonucleotide reductase [Pseudoxanthomonas suwonensis 11-1] gi|317464185|gb|ADV25917.1| ribonucleotide reductase [Pseudoxanthomonas suwonensis 11-1] Length = 354 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 74/314 (23%), Positives = 138/314 (43%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + L+ E+ +G A+ +S Sbjct: 44 IPYPSFYRAYKELSTNFWIPDEVDMKSDARQYGE---LSAREKNAFDSIIGLLATLDS-P 99 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 100 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLANQNRVFEIARTHPT 159 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I + + ++ ++ E L + + EG+ FY+GFA +L R Sbjct: 160 ILRRNAPIMA--------AYDDFMREKTAETLLRALIQSSILEGINFYSGFAYFYNLVRQ 211 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F +VI I ENP L T E A LE Sbjct: 212 NRMAGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDELADYVHLAFRHAIELETQ 271 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVID--LKK 331 + E + G G++ +Y+++ AN+ +G+E L+ + T+N PW+ D + Sbjct: 272 WTGEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIESLYTETTDNVMPWIRAYADNFTET 330 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 331 KTDFFEMRNASYKK 344 >gi|172036555|ref|YP_001803056.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp. ATCC 51142] gi|171698009|gb|ACB50990.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp. ATCC 51142] Length = 352 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 83/334 (24%), Positives = 150/334 (44%), Gaps = 27/334 (8%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ QL ++Y WA Y N W+P + + D+ + + LTDDER L + Sbjct: 34 TNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDVTQDVTDYAN---LTDDERYAYDGILSY 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 +S+ NI + ++ PE + Q +E +H+ ++QY+I ++ + +++ Sbjct: 91 LTFLDSVQTCNIP-HLKSSITAPEISLCMAEQISQEGMHNQSYQYLIETIIPPDRRTQVY 149 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 + +R + + + + Q DA E + + EG++FY GF Sbjct: 150 DFWRTDKVLKDRCEFIAKLYQKY--------IDDATPENYFIALMADFLLEGLYFYNGFI 201 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 +L M G A+ ++ I RDE H+ +I + + PH + ++ M Sbjct: 202 YFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPHSVEQIYE-----MFD 256 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWM 323 A E + + + +G+ S E+Y +++AN R IGLEPL+ KY ++P+ + Sbjct: 257 MAVNYECRWTNHIVGNNILGITESSTEKYTKYLANIRLRSIGLEPLYPEPKYNKSPYTHL 316 Query: 324 SEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 D KKE NFFE VT Y + + WD Sbjct: 317 ERFSDTKKEAHTKANFFEATVTSYVMSSGVTGWD 350 >gi|212638239|ref|YP_002314759.1| ribonucleotide-diphosphate reductase subunit beta [Anoxybacillus flavithermus WK1] gi|212559719|gb|ACJ32774.1| Ribonucleotide reductase, beta subunit [Anoxybacillus flavithermus WK1] Length = 345 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 78/321 (24%), Positives = 144/321 (44%), Gaps = 23/321 (7%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY ++ Y N W P E+ M DD+ W + L++ ER +G + +S V Sbjct: 34 IKYSHFYDIYKMLLGNFWTPFEINMSDDIKQW---HALSERERDAFLHIIGLLSILDS-V 89 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 N + A+ ++++P + +E VH+ ++ Y++ S+ ++ F M R P Sbjct: 90 QPNFIGAMKEYITDPSVKAIFSIIEQQEVVHNQSYSYVLASIEKLSEQHRAFEMARTNPH 149 Query: 155 ITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 I + ++ Y P+ T + V +V EG+ FY+GFA +L R Sbjct: 150 IYKRNEHVIRVYEAFREQPTVETFCR---------ALVASLVLEGINFYSGFAFFYNLAR 200 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL-WTKEFQQKSRTMLHEATLLE 272 KM+ + YI +DE H F ++ + ENP + F + EA E Sbjct: 201 NQKMLKTSTMISYINKDELCHSYFISQLVRAVLWENPQIDENGAFSAWIYDYIDEAIRYE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM----SEVID 328 ++ + + G++ E+Y++++ N+R +GL+ + EN PW+ E ++ Sbjct: 261 TEWSRFVL-RDIDGIDVIEMEKYIEYLGNKRLRMLGLDDRYDADENSMPWIRVFSDENVN 319 Query: 329 LKKEKNFFETRVTEYQQGAEL 349 L K +FFE R Y + ++ Sbjct: 320 LGK-TDFFEARPRSYTKTTDV 339 >gi|294945135|ref|XP_002784568.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus ATCC 50983] gi|239897674|gb|EER16364.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus ATCC 50983] Length = 238 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 25/227 (11%) Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 E +HS T+ +I + D E +F VPS+ KA WAL + Sbjct: 2 ENIHSETYSLLIDNYIKDPAEKDKIFRAIETVPSVRKKAEWALSWIND------------ 49 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 D F + L F V EG+ F F I L + M G+ + I RDE LH +F Sbjct: 50 -DNCFSERLIAFACV-EGILFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHADFACL 107 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 + N + +T+ ++ ++ A +E + E++P +G+N+ +Y++F+A Sbjct: 108 LYNMMH------YTRLPDERVHEIVRGAVDVERVFISESLPVSLIGMNSQLMCRYIEFVA 161 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +R +G L+ T NPF WM ++I L+ + NFFE RV EYQ+G Sbjct: 162 DRLLVALGHPKLYNAT-NPFDWM-KMISLQGKTNFFEKRVGEYQKGG 206 >gi|67921622|ref|ZP_00515140.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH 8501] gi|67856734|gb|EAM51975.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH 8501] Length = 321 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 82/329 (24%), Positives = 147/329 (44%), Gaps = 33/329 (10%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 ++Y WA Y N W+P + + D+ + LTDDER L + +S+ Sbjct: 11 VRYTWAVGLYQQMRENFWIPQRLDITQDVTDY---GNLTDDERYAYDGILSYLTFLDSVQ 67 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPS 154 NI + ++ PE + Q +E +H+ ++QY+I ++ E +++ +R Sbjct: 68 TCNIP-HLKTSITAPEISLCMAEQISQEGMHNQSYQYLIETIIPPERRTQVYEFWRTDKL 126 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSL 211 + + + + Q K D ++ F+ + + EG++FY GF +L Sbjct: 127 LRDRCEFIAKLYQ-----------KYIDDATTENYFIALMADFLLEGLYFYNGFIYFYNL 175 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 M G A+ ++ I RDE H+ +I + + PH + ++ M A Sbjct: 176 ASRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPHSVEQIYE-----MFDMAVNY 230 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVID 328 E + + + +G+ S E+Y +++AN R IGLEPL+ KY+++P+ + D Sbjct: 231 ECRWTNHIVGNNILGITESSTEKYTKYLANIRLRSIGLEPLYPEPKYSKSPYTHLERFSD 290 Query: 329 LKK----EKNFFETRVTEYQQGAELK-WD 352 KK + NFFE VT Y + L WD Sbjct: 291 TKKAAHTKANFFEATVTSYVMSSGLTGWD 319 >gi|282598964|ref|YP_003358881.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Deftia phage phiW-14] gi|257219034|gb|ACV50049.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Deftia phage phiW-14] Length = 346 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 78/316 (24%), Positives = 136/316 (43%), Gaps = 33/316 (10%) Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 HW+ E + DD+ W++++ +DDER IK L F + +VA+N N E Sbjct: 36 HWVKQEAELGDDVNDWRNRS--SDDERSFIKEILTVFTQGDVVVADNYKSIFIPAFKNNE 93 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-WALQYTQTLSS 171 +L+ A E +H + + GL + +F +RE + + + A QY Sbjct: 94 VSNWLVGVAAREVIHQDAYAMANETFGLPD-SMFGRFREYQEMRERNDLMATQY-----D 147 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN---------KMVGIAE 222 PS G L V EG+ FA +L R + + G+ + Sbjct: 148 PSMVEG--------LAMGLVHTTFNEGVCLMGAFANLLQFNRFDVPGFNGYRGRYKGLTK 199 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 ++ +RDE +H+ + ++ E+P L T E +++ + E + K Sbjct: 200 INKWSLRDEGIHVEGSSLLYRKVMGEHPWLMTDEHKKQVYDLARAVVAAEDLFLDLAFKK 259 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI---DLKKEKNFFETR 339 + + + Y++++ NRR Q+G + +F+ P PW+ E++ K++ NFFETR Sbjct: 260 YQLTMTKDESKAYVRYMMNRRLLQLGHKAIFEVQGIPCPWIEEILGGAGGKRDSNFFETR 319 Query: 340 VTEYQQG----AELKW 351 V YQ EL W Sbjct: 320 VDNYQASGALVGELDW 335 >gi|254523600|ref|ZP_05135655.1| ribonucleoside-diphosphate reductase, beta subunit [Stenotrophomonas sp. SKA14] gi|219721191|gb|EED39716.1| ribonucleoside-diphosphate reductase, beta subunit [Stenotrophomonas sp. SKA14] Length = 346 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 74/314 (23%), Positives = 139/314 (44%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + +G E+ +G A+ +S Sbjct: 36 IPYPSFYRAYKELSTNFWIPDEVDMKADARQYGELSGR---EKNAYDSIIGLLATLDS-P 91 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 92 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLPNQNRVFELARTHPT 151 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ ++ E L + + EG+ FY+GFA ++ R Sbjct: 152 II-KRNAPIM-------GAYDDFMREKTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQ 203 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I ENP L T E A LE Sbjct: 204 NRMTGTGKIISFINRDELAHTKFISELIRAIIGENPELQTNELTAYVHQAFEHAIELETQ 263 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 ++ E + G G++ +Y+++ AN+ +G+E L+ T+N PW+ D + Sbjct: 264 WSSEVL-DGIDGIDVEEMTRYVKYRANKMAGMLGIERLYSDTTDNVMPWIKAYADNFTET 322 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 323 KTDFFEMRNASYKK 336 >gi|307104534|gb|EFN52787.1| hypothetical protein CHLNCDRAFT_10712 [Chlorella variabilis] Length = 214 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 101/219 (46%), Gaps = 20/219 (9%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L A ++ LLP+KY +E Y A ++W EV + D+ W+ LTDDER + Sbjct: 4 ILQANNERFCLLPVKYDRCFEYYKQAQASYWTAEEVDLSQDMRDWRK---LTDDERHFVS 60 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + + PE R + Q+ EAVHS + ++ D Sbjct: 61 YVLAFFAASDGIVLENLSTRFMQEVQIPEARAFYAFQSAIEAVHSEMYGLLLEQYIRDPD 120 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF+ +P + KA WA+++ + SS F + V Y EG+ Sbjct: 121 ERDLLFHAVDTIPCVQKKAQWAMKWIE--SSSCFA------------ERLVAYACVEGIH 166 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 F F I L + M G+ + I RDE LH +F Sbjct: 167 FSGSFCSIFWLKKRQLMPGLTFSNEMISRDEGLHTDFAC 205 >gi|190896524|gb|ACE96775.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896534|gb|ACE96780.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E +HS + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + F + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDWM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|170077010|ref|YP_001733648.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus sp. PCC 7002] gi|169884679|gb|ACA98392.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus sp. PCC 7002] Length = 352 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 37/339 (10%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ QL ++Y WA Y N W+P ++ + D+ + + LTD ER L + Sbjct: 34 TNLMQLNDVRYPWAVGLYQQMRENFWIPQKLDITQDVTDY---HNLTDSERRAFDGILSY 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 +S+ N+ I ++ PE + Q +E +H+ ++QY+I ++ + ++ Sbjct: 91 LTFLDSVQTCNLP-HIKSSITAPEISLCIAEQISQEGMHNQSYQYMIETIIPSDRRSAVY 149 Query: 147 NMYREVPSITAKANW-ALQYTQTLSSPS----FTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + +R + + + A Y + + +P+ FTT D + EG++F Sbjct: 150 DFWRTDKVLRDRCEYIASNYQRYIDNPTPENYFTTLVAD-------------YLLEGLYF 196 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y GF +L M G A+ ++ I RDE H+ +I + H ++ Sbjct: 197 YNGFVFFYNLASRMLMPGSADIFKMINRDELSHVRLFQKLIPEAMATFDHSVDHIYE--- 253 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTEN 318 M+ A E + + + +G+ S E Y +++AN R IGLEPL+K Y ++ Sbjct: 254 --MVERAVQYECQWTNHIVGNDILGITEQSTEIYTKYLANIRLQAIGLEPLYKGDQYKKS 311 Query: 319 PFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 P+ + D KKE NFFE VT Y + + WD Sbjct: 312 PYRHLERFSDTKKEGNTKANFFEAGVTSYVMSSGITGWD 350 >gi|261404531|ref|YP_003240772.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10] gi|261280994|gb|ACX62965.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10] Length = 343 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 139/298 (46%), Gaps = 19/298 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 NHW+ E+PM D + L +E+ K N+ A +S+ V + R+ ++ Sbjct: 47 NHWIADEIPMSKDAQQFPR---LDPEEQRTFKINISLLAVLDSM-QTMFVSDVKRYFTDS 102 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 +E VH+ ++ Y+++S+ ++ E+F ++ P + L+ Q + Sbjct: 103 SLEAISAIIGQQEVVHNQSYSYVLSSIVSEQEQKEIFEYWKHDPVL-------LERNQFI 155 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 S+ + Q F + + V ++ EG++FY+ FA +L R KM+ ++ YI R Sbjct: 156 SNIYQNFRDNPSPQSFFEAM-VADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQR 214 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE+ H F +V Q+ + P L TKE + A LE +AH T+ G++ Sbjct: 215 DENQHCYFFAEVFKQLLKDFPELNTKENIDYLYRTIDRAVELETNWAHYTL-SNVRGIDL 273 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEK-NFFETRVTEY 343 Y+++IANRR +GLE ++ + N PW+ D L K +FFE + Y Sbjct: 274 NELSDYIKYIANRRITMMGLEKAYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNY 331 >gi|289664735|ref|ZP_06486316.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 349 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 95 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 154 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ +D E L + + EG+ FY+GFA +L R Sbjct: 155 II-KRNAPIM-------GAYEDFMRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQ 206 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I EN L E A LE Sbjct: 207 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDELTDYVHKAFEHAIDLETV 266 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 + E + G G++ +Y+++ AN+ +G+E L++ +N PW+ D + Sbjct: 267 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 325 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 326 KTDFFEMRNASYKK 339 >gi|215275538|sp|P0C8I0|RIR2_ASFK5 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 81/318 (25%), Positives = 137/318 (43%), Gaps = 30/318 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++ W Y + W EV M D+ W++ + +R K+ L FF ++ Sbjct: 14 IFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVVAD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ R + E + QA +E VHS + + +L DE E +F+ Sbjct: 71 EIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + P I A W Q+ + + L + V + EG+ F F I Sbjct: 131 KHPIIRKMAQWVQQWMDPVKNS-------------LGERLVGFAAVEGILFQNHFVAIQF 177 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L N M G+ ++I RDE +H +F +I+ P ++ +L EA Sbjct: 178 LKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYLNNIPE------EKIIHKILKEAVE 231 Query: 271 LE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 L I+YA + G + QY+++ + C + + ++K ENPFP M++ Sbjct: 232 LVDEFISYAFDKARGSVPGFSKEMLFQYIRYFTDNLCFMLQCKSIYK-VENPFPQMTKFF 290 Query: 328 DLKKEK-NFFETRVTEYQ 344 + EK NFFE R T+YQ Sbjct: 291 LNEVEKTNFFELRPTQYQ 308 >gi|162849254|emb|CAN10143.1| Ribonucleotide reductase small subunit [African swine fever virus Benin 97/1] Length = 327 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 34/320 (10%) Query: 34 LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K L + W EV M D+ W++ + +R K+ L FF Sbjct: 14 IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVV 68 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148 ++ +V N++ R + E + QA +E VHS + + +L DE E +F+ Sbjct: 69 ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 128 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 + P I A W Q+ D D+ L + V + EG+ F F I Sbjct: 129 IEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEGILFQNHFVAI 175 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 L N M G+ ++I RDE +H +F +I+ P ++ +L EA Sbjct: 176 QFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------EKIIHKILKEA 229 Query: 269 TLLE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 L I YA + G + QY+++ + C + + ++K NPFP M++ Sbjct: 230 VELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYK-VGNPFPQMTK 288 Query: 326 VIDLKKEK-NFFETRVTEYQ 344 + EK NFFE R T+YQ Sbjct: 289 FFLNEVEKTNFFELRPTQYQ 308 >gi|162849427|emb|CAN10392.1| Ribonucleotide reductase small subunit [African swine fever virus OURT 88/3] gi|291289488|emb|CBH29145.1| BA71V-F334L [African swine fever virus E75] gi|303398729|emb|CBW46710.1| F334L [African swine fever virus Georgia 2007/1] Length = 334 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 34/320 (10%) Query: 34 LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K L + W EV M D+ W++ + +R K+ L FF Sbjct: 21 IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVV 75 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148 ++ +V N++ R + E + QA +E VHS + + +L DE E +F+ Sbjct: 76 ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 135 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 + P I A W Q+ D D+ L + V + EG+ F F I Sbjct: 136 IEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEGILFQNHFVAI 182 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 L N M G+ ++I RDE +H +F +I+ P ++ +L EA Sbjct: 183 QFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------EKIIHKILKEA 236 Query: 269 TLLE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 L I YA + G + QY+++ + C + + ++K NPFP M++ Sbjct: 237 VELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYK-VGNPFPQMTK 295 Query: 326 VIDLKKEK-NFFETRVTEYQ 344 + EK NFFE R T+YQ Sbjct: 296 FFLNEVEKTNFFELRPTQYQ 315 >gi|16332312|ref|NP_443040.1| hypothetical protein slr0591 [Synechocystis sp. PCC 6803] gi|1653942|dbj|BAA18852.1| slr0591 [Synechocystis sp. PCC 6803] Length = 355 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 83/336 (24%), Positives = 154/336 (45%), Gaps = 31/336 (9%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA-LWKSKNGLTDDERLMIKRNLG 87 +++ QL ++Y WA Y N W+P + + D+ W LT++ER L Sbjct: 37 TNLMQLNDVRYNWAVGLYQQMRENFWIPQRLDITQDVTDYW----NLTNEERYAFDGILS 92 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GEL 145 + +S+ NI + ++ PE + Q +E +H+ ++QY+I ++ E ++ Sbjct: 93 YLTFLDSVQTCNIP-HLKSSVTAPEISLCMAEQISQEGMHNQSYQYMIETIIPTEKRDKV 151 Query: 146 FNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 + +R + + + A+ Y + + P+ + + L Y++ EG++FY G Sbjct: 152 YEFWRTDRVLKERCEYIAMLYQKYVDHPT--------QENYFIALMADYLL-EGLYFYNG 202 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 F +L M G A+ ++ I RDE H + + ++ E ++T Q M Sbjct: 203 FIYFYNLASRMLMPGSADIFKMINRDELSH----VRLYQKLIPEAMQVFTHSTDQIYE-M 257 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFP 321 +A E + + + +G+ S EQY +++AN R IGL+PL+ +Y ++P+ Sbjct: 258 FDKAVEFECRWTNHIVGNNILGITESSTEQYTKYLANSRLRAIGLDPLYTDARYGKSPYT 317 Query: 322 WMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 + D KKE NFFE VT Y + + WD Sbjct: 318 HLERFSDTKKEAHTKANFFEATVTSYVMSSGVSGWD 353 >gi|67906414|gb|AAY82584.1| ribonucleotide reductase subunit 2 [Carassius carassius] Length = 246 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 26/257 (10%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W S L D+ER I L FFA+S+ Sbjct: 13 IFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDS---LKDEERYFISHVLAFFAASD 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + D E LFN Sbjct: 70 GIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKERDFLFNAIE 129 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + KA+WAL + G K+A + V + EG++F FA I Sbjct: 130 TMPCVKKKADWALNW----------IGDKNAQ---YGERVVAFAAVEGIFFSGSFASIFW 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + HL K ++ + ++ A Sbjct: 177 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVNKPSEETVKKIIVNAVA 229 Query: 271 LEIAYAHETMPKGFVGL 287 +E + + +P +G+ Sbjct: 230 IEQEFLTDALPVKLIGM 246 >gi|329922162|ref|ZP_08277907.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus sp. HGF5] gi|328942352|gb|EGG38619.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus sp. HGF5] Length = 370 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 139/298 (46%), Gaps = 19/298 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 NHW+ E+PM D + L +E+ K N+ A +S+ V + R+ ++ Sbjct: 74 NHWIADEIPMSKDAQQFPR---LDPEEQRTFKINISLLAVLDSM-QTMFVGDVKRYFTDS 129 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 +E VH+ ++ Y+++S+ ++ E+F ++ P + L+ Q + Sbjct: 130 SLEAISAIIGQQEVVHNQSYSYVLSSIVSEQEQKEIFEYWKHDPVL-------LERNQFI 182 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 S+ + Q F + + V ++ EG++FY+ FA +L R KM+ ++ YI R Sbjct: 183 SNIYQNFRDNPSPQSFFEAM-VADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQR 241 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE+ H F +V Q+ + P L TKE + A LE +AH T+ G++ Sbjct: 242 DENQHCYFFAEVFKQLLKDFPELNTKENIDYLYRTIDRAVELETNWAHYTL-SNVRGIDL 300 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEK-NFFETRVTEY 343 Y+++IANRR +GLE ++ + N PW+ D L K +FFE + Y Sbjct: 301 NELSDYIKYIANRRITMMGLEKAYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNY 358 >gi|315644971|ref|ZP_07898099.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453] gi|315279682|gb|EFU42984.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453] Length = 343 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 19/298 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 NHW+ E+PM D + + L +E+ K N+ A +S+ V + R+ ++ Sbjct: 47 NHWIADEIPMSKDAQQFPT---LDSEEQRTFKINISLLAVLDSM-QTMFVSDVKRYFTDS 102 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169 +E VH+ ++ Y+++S+ D+ E+F ++ P + L+ Q + Sbjct: 103 SLEAISAIIGQQEVVHNQSYSYVLSSIVSDQEQKEIFEYWKHDPVL-------LERNQFI 155 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 S + Q F + + V ++ EG++FY+ FA +L R KM+ ++ YI R Sbjct: 156 SDIYQNFRDNPSPQTFFEAM-VADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQR 214 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE+ H F +V Q+ + P L ++E + A LE +AH T+ G++ Sbjct: 215 DENQHCYFFAEVFKQLLKDFPELNSQENIDYLYRTIDRAVELETNWAHYTL-SNVRGIDL 273 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID--LKKEK-NFFETRVTEY 343 Y+++IANRR +GLE ++ + N PW+ D L K +FFE + Y Sbjct: 274 NELGDYIKYIANRRITMMGLEKAYQGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNY 331 >gi|190896568|gb|ACE96797.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896580|gb|ACE96803.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 26/241 (10%) Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + E R + Q E +HS + ++ + D E LF+ VP + KA WA Sbjct: 6 KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQWA 65 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L++ D + F + L F V EG++F F I L + M G+ Sbjct: 66 LRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTF 111 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I RDE LH +F + + ++ K +++ + ++ +A +E + + +P Sbjct: 112 SNELISRDEGLHCDFACLLYSLLR-------KKLSEEQVKGIVKDAVDIEREFVVDALPC 164 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE RV E Sbjct: 165 ALVGMNGELMSQYIEFVADRLLGALGCGKVYN-AANPFDWM-ELISLQGKTNFFEKRVGE 222 Query: 343 Y 343 Y Sbjct: 223 Y 223 >gi|9628152|ref|NP_042738.1| ribonucleotide reductase small subunit [African swine fever virus] gi|1172939|sp|P42492|RIR2_ASFB7 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|780414|gb|AAA65274.1| ribonucleotide reductase small subunit [African swine fever virus] gi|1097433|prf||2113434AT ribonucleotide reductase:SUBUNIT=small Length = 334 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 34/320 (10%) Query: 34 LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K L + W EV M D+ W++ + +R K+ L FF Sbjct: 21 IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVV 75 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148 ++ +V N++ R + E + QA +E VHS + + +L DE E +F+ Sbjct: 76 ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 135 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 + P I A W Q+ D D+ L + V + EG+ F F I Sbjct: 136 IEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEGILFQNHFVAI 182 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 L N M G+ ++I RDE +H +F +I+ P ++ +L EA Sbjct: 183 QFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------EKIIHKILKEA 236 Query: 269 TLLE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 L I YA + G + QY+++ + C + + ++K NPFP M++ Sbjct: 237 VELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYK-VGNPFPQMTK 295 Query: 326 VIDLKKEK-NFFETRVTEYQ 344 + EK NFFE R T+YQ Sbjct: 296 FFLNEVEKTNFFELRPTQYQ 315 >gi|68161126|gb|AAY86994.1| ribonucleotide reductase M2b [Ictalurus punctatus] Length = 192 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 22/198 (11%) Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 LFN +P + KA+WALQ+ D + F + L F V EG++F Sbjct: 17 LFNAIETLPYVKRKADWALQWIS------------DTNSTFAERLVAFAAV-EGIFFSGS 63 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 FA I L + M G+ + I RDE LH NF + +Q++ K + + + Sbjct: 64 FAAIFWLKKRGLMPGLTYSNELISRDEGLHCNFACLIYSQLQ-------KKPSADRVKDI 116 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 + +A +E + E +P +G+N+ +QY++F+A+R +G+ +++ ENPF +M Sbjct: 117 ITKAVRIEQEFLTEALPVDLIGINSYLMKQYIEFVADRLLTDLGIPKVYE-AENPFDFM- 174 Query: 325 EVIDLKKEKNFFETRVTE 342 E I L+ + NFFE RV E Sbjct: 175 EFISLEGKTNFFEKRVAE 192 >gi|190896572|gb|ACE96799.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896574|gb|ACE96800.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896576|gb|ACE96801.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896578|gb|ACE96802.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 26/241 (10%) Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + E R + Q E +HS + ++ + D E LF+ VP + KA WA Sbjct: 6 KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQWA 65 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L++ D + F + L F V EG++F F I L + M G+ Sbjct: 66 LRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTF 111 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I RDE LH +F + + ++ K +++ + ++ +A +E + + +P Sbjct: 112 SNELISRDEGLHCDFACLLYSLLR-------KKLSEEQVKGIVKDAVDIEREFVVDALPC 164 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE RV E Sbjct: 165 ALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDWM-ELISLQGKTNFFEKRVGE 222 Query: 343 Y 343 Y Sbjct: 223 Y 223 >gi|190896570|gb|ACE96798.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896582|gb|ACE96804.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 26/241 (10%) Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162 + + E R + Q E +HS + ++ + D E LF+ VP + KA WA Sbjct: 6 KEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKAQWA 65 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L++ D + F + L F V EG++F F I L + M G+ Sbjct: 66 LRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTF 111 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I RDE LH +F + + ++ K +++ + ++ +A +E + + +P Sbjct: 112 SNELISRDEGLHCDFACLLYSLLR-------KKLSEEQVKGIVKDAVDIEREFVVDALPC 164 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE RV E Sbjct: 165 ALVGMNGELMSQYIEFVADRLLGALGCGKVYN-AANPFDWM-ELISLQGKTNFFEKRVGE 222 Query: 343 Y 343 Y Sbjct: 223 Y 223 >gi|126658748|ref|ZP_01729893.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110] gi|126620010|gb|EAZ90734.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110] Length = 347 Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 84/352 (23%), Positives = 157/352 (44%), Gaps = 24/352 (6%) Query: 8 SPIQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 SPI + N +++ + ++V L +YGWA Y + + W+P + D Sbjct: 9 SPIFNPTGKDNKENRHLWGGDTTNVINLNETRYGWARSIYQTMRESFWVPQRTDLSQDKL 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + L ER +K L + +S+ NI + R+++ PE R L Q +EA+ Sbjct: 69 DYAN---LIPGERRALKGILSYLNFLDSVQVANIP-ELSRYITAPEARMCLAEQTSQEAM 124 Query: 127 HSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H T+QYI S+ ++ E+++ +++ + + + Y Q L++ + Sbjct: 125 HGETYQYITESIIPENEQHEVYDFWKQDLLLHERCEFIAGYYQNLAN-------NPTGEN 177 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + L Y++ EG+ FY GF +L + ++ G A+ + I DE H++ +I + Sbjct: 178 YYMALIGDYLL-EGLLFYQGFLFFYNLASSQRLAGCAKLIKQINMDELTHVSLYQKLITE 236 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + + + + + H EI + + +G++ S E Y +++AN R Sbjct: 237 ATTKFSYS-----EDEITELFHTTVEREIEWTNHIFDGQILGVSKASTEAYTKYLANLRL 291 Query: 305 HQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQGAELK-WD 352 IG+ ++ ENP+ W K + FFET VT Y Q +K WD Sbjct: 292 KAIGIPAIYPKIENPYAHLDWADFKGIGKSKAAFFETEVTGYAQPTAVKGWD 343 >gi|71276518|ref|ZP_00652793.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon] gi|71900741|ref|ZP_00682863.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|170729741|ref|YP_001775174.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa M12] gi|71162695|gb|EAO12422.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon] gi|71729511|gb|EAO31620.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|167964534|gb|ACA11544.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M12] Length = 349 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 76/315 (24%), Positives = 140/315 (44%), Gaps = 20/315 (6%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSESL 95 + Y + Y N W+P EV M+ D K + G L+ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNFWIPDEVDMKID----KRQYGELSAREKNAYDAIIGLLATLDS- 93 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVP 153 + + ++++P +E +H+ ++ Y++ S+ ++ +F + R P Sbjct: 94 PQTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLANQNRVFEIARTHP 153 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 +I + +Q ++ ++ E L + + EG+ FY+GFA +L R Sbjct: 154 TILKRNAPIMQ--------AYDDFMREKTAETLLYSLIQSSILEGINFYSGFAYFYNLVR 205 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N+M G + +I RDE H F +VI I ENP L T A LE Sbjct: 206 QNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDALTDYVHQAFAHAIELET 265 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVID--LK 330 + E + G G++ +Y+++ AN+ +G+E L+ + T+N PW+ D + Sbjct: 266 QWTGEVL-NGIDGIDVEEMIRYVKYRANKMAGMLGIETLYTETTDNVMPWIRAYADNFTE 324 Query: 331 KEKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 325 TKTDFFEMRNASYKK 339 >gi|172054963|ref|YP_001806290.1| ribonucleoside-diphosphate reductase subunit beta [Cyanothece sp. ATCC 51142] gi|171701244|gb|ACB54224.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp. ATCC 51142] Length = 347 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 86/350 (24%), Positives = 156/350 (44%), Gaps = 25/350 (7%) Query: 8 SPIQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 SPI + N + + + ++V L +YGWA Y + +W+P + D Sbjct: 9 SPIFNPTGKDNKEKRHLWGGDTTNVINLNETRYGWARTIYQTMREGYWIPQRTDLSQDKL 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + L ER +K L + +S+ NI + R+++ PE R L Q +EA+ Sbjct: 69 DYVN---LIPGERRALKGILSYLNFLDSVQVANIP-ELSRYITAPEARMCLAEQTSQEAM 124 Query: 127 HSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H T+QYI S+ ++ E+++ +++ + + + Y QTL+ + Sbjct: 125 HGETYQYITESIIPENEQHEVYDFWKKDLLLNERCEFIASYYQTLAD-------NPCGET 177 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + L Y++ EG+ FY GF +L + ++ G A+ + I DE H++ +I + Sbjct: 178 YFMALIGDYLL-EGLLFYQGFLFFYNLASSQRLAGCAKLIKQINMDELTHVSLYQKLITE 236 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATL-LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 K + + + T L T+ EI + + +G++ S E Y +++AN R Sbjct: 237 AKTKF------SYSEDEITELFVNTVEKEIEWTNHIFDGQILGVSEASTEAYTKYLANLR 290 Query: 304 CHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQGAELK 350 IG+ ++ ENP+ W K + FFET VT Y Q +K Sbjct: 291 LKAIGISAIYPEVENPYAHLDWADFKGIGKSKAAFFETEVTGYAQPTAVK 340 >gi|325914792|ref|ZP_08177129.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria ATCC 35937] gi|325538985|gb|EGD10644.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria ATCC 35937] Length = 349 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSSREKNAYDSIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 95 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 154 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ +D E L + + EG+ FY+GFA +L R Sbjct: 155 II-KRNAPIM-------GAYEDFMRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQ 206 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I EN L + A LE Sbjct: 207 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDQLTDYVHKAFEHAIDLETV 266 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 + E + G G++ +Y+++ AN+ +G+E L++ +N PW+ D + Sbjct: 267 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 325 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 326 KTDFFEMRNASYKK 339 >gi|190896528|gb|ACE96777.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q + +HS + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIDNIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + F + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDWM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|38232564|gb|AAR15079.1| ribonucleotide reductase R2 subunit variant [Aedes albopictus] Length = 219 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 102/201 (50%), Gaps = 22/201 (10%) Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 LFN +P + KA+WAL + +SS G + V + EG++F Sbjct: 23 LFNAIDNLPCVKKKADWALNW---ISSKQANFGER----------VVAFAAVEGIFFSGS 69 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 FA I L + M G+ + I RDE LH +F + +L K Q++ + Sbjct: 70 FASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFK-------YLVQKPSQERVIEI 122 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 + EA L+E + + +P +G+N QY++F+A+R ++G++ ++ T+NPF +M Sbjct: 123 IREAVLIEQEFLTKALPVDLLGMNCELMSQYIEFVADRLLLELGIDKIYN-TKNPFSFM- 180 Query: 325 EVIDLKKEKNFFETRVTEYQQ 345 E I L+ + NFFE +V EYQ+ Sbjct: 181 EFISLEGKTNFFEKKVGEYQK 201 >gi|325919223|ref|ZP_08181270.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325923021|ref|ZP_08184721.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325546491|gb|EGD17645.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325550297|gb|EGD21104.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] Length = 347 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFELARTHPT 152 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ +D E L + + EG+ FY+GFA +L R Sbjct: 153 II-KRNAPIM-------GAYDDFLRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQ 204 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I EN L + A LE Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDQLTDYVHKAFEHAIDLETV 264 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 + E + G G++ +Y+++ AN+ +G+E L++ +N PW+ D + Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 324 KTDFFEMRNASYKK 337 >gi|261599112|ref|YP_003257364.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497769|gb|ACX84218.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 357 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 86/323 (26%), Positives = 150/323 (46%), Gaps = 29/323 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA+E + N HW+ TE+ MQ D+ W +KN LTD E+ +I L FA +E+ Sbjct: 12 PFEYQWAYEYWFKQQNAHWLHTEINMQSDIYDW-NKN-LTDQEKNVIGDILKGFAQTETE 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE--EAVHSHTFQYIITSLGLDEGELFNMYREVP 153 V N I + PE + ++ QAF E +H+ + Y+ LGLD F+ + E Sbjct: 70 VGNYWSEMIPKWFPIPEIK--MMGQAFGSFETIHAAAYSYLNDILGLDN---FHAFLEDD 124 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 I K ++L + K +E + + +F EG+ ++ FA +LS + Sbjct: 125 VIMNK-------LKSLMDVRNSDHGKYNKEEIARSVALFSAAAEGVQLFSSFAVLLSFRK 177 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 +N++ G+ +Q + +RDESLH G + EN L KE ++S ++ L + Sbjct: 178 SNRLKGVGQQIIFSVRDESLHSEAGCKIFRTFCEENKGL--KEIVERS---VYHGVDLAL 232 Query: 274 AYAHETMPKGFVGLNAPSCEQ-----YMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325 + K F G + + ++ +M+ AN + ++G + + W Sbjct: 233 KNEFVFIDKIFGGRDLCTIKREELKNFMKDRANMKLRELGFFDSYHVDRRMLDNMNWFYI 292 Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348 I +++ +FF+ R T Y + E Sbjct: 293 TISGEQQTDFFDNRETGYSKPNE 315 >gi|21233407|ref|NP_639324.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21115247|gb|AAM43206.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 347 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ +D E L + + EG+ FY+GFA +L R Sbjct: 153 II-KRNAPIM-------GAYDDFMRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQ 204 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I EN L + A LE Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDQLTDYVHKAFEHAIDLETV 264 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 + E + G G++ +Y+++ AN+ +G+E L++ +N PW+ D + Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 324 KTDFFEMRNASYKK 337 >gi|66770372|ref|YP_245134.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. campestris str. 8004] gi|188993572|ref|YP_001905582.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. campestris str. B100] gi|66575704|gb|AAY51114.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. campestris str. 8004] gi|167735332|emb|CAP53546.1| Ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. campestris] Length = 347 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ +D E L + + EG+ FY+GFA +L R Sbjct: 153 II-KRNAPIM-------GAYDDFMRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQ 204 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I EN L + A LE Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDQLTDYVHKAFEHAIDLETV 264 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 + E + G G++ +Y+++ AN+ +G+E L++ +N PW+ D + Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 324 KTDFFEMRNASYKK 337 >gi|71280050|ref|YP_269047.1| ribonucleotide-diphosphate reductase subunit beta [Colwellia psychrerythraea 34H] gi|71145790|gb|AAZ26263.1| ribonucleotide reductase, beta subunit [Colwellia psychrerythraea 34H] Length = 376 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 133/292 (45%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A W+S LTD E+ + NL + +S+ A ++ + +S PE Sbjct: 49 WRPEEVDVSKDRADWQS---LTDSEKHIFISNLKYQTLLDSMAARSVNAVLLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------T 166 ++ AF E +HS ++ +I+ +L + GE+F+ P+I +A+ ++ T Sbjct: 106 ETWVETWAFSETIHSRSYTHILRNLFTEPGEIFDDIIVNPAILKRASSIAKFFDDVILTT 165 Query: 167 QTLSSPSFTT-----GTKDADQEFLQDLFVFYV----VFEGMWFYTGFAQILSLGRANKM 217 Q L S T T + L++ V E + FY FA + + Sbjct: 166 QLLQSQGEGTYEVEGKTVEVSTRKLKERLFLAVCSVNALEAIRFYVSFACSFAFAERELL 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPH--LWTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N + ++P + ++E + + + + E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHILNNWRSGKDDPEMKIISEELRDEGLQIFLDVVEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLNA QY+++I+N+R IG F NP PWM+ Sbjct: 286 EWAQYLFKDGSMIGLNADILNQYIEYISNQRLTAIGFGAPFDIKSNPLPWMN 337 >gi|167948644|ref|ZP_02535718.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 124 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/127 (42%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 YIMRDE LH +FGI V QI +E Q R M E E AYA + + Sbjct: 1 YIMRDEVLHASFGIRVAKQIMLEEN---IAPDPQAIREMWDECEAAEDAYAGYILRDPIL 57 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 G + +++ANRR QIGL + E PW+ E +L+KEKNFFET VTEYQ Sbjct: 58 GYSKDDHMGQFRYVANRRARQIGLSEPYPGAEATLPWLDEQANLRKEKNFFETTVTEYQT 117 Query: 346 GAELKWD 352 G L WD Sbjct: 118 GGALNWD 124 >gi|15837799|ref|NP_298487.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa 9a5c] gi|28198393|ref|NP_778707.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa Temecula1] gi|9106169|gb|AAF84007.1|AE003954_4 ribonucleoside-diphosphate reductase beta chain [Xylella fastidiosa 9a5c] gi|28056463|gb|AAO28356.1| ribonucleoside-diphosphate reductase beta chain [Xylella fastidiosa Temecula1] Length = 346 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/315 (23%), Positives = 140/315 (44%), Gaps = 20/315 (6%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSESL 95 + Y + Y N W+P EV M+ D K + G L+ E+ +G A+ +S Sbjct: 36 IPYPSFYRAYKELSTNFWIPDEVDMKID----KRQYGELSAREKNAYDAIIGLLATLDS- 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVP 153 + + ++++P +E +H+ ++ Y++ S+ ++ +F + R P Sbjct: 91 PQTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLANQNRVFEIARTHP 150 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 +I + +Q ++ ++ E L + + EG+ FY+GFA +L R Sbjct: 151 TILKRNAPIMQ--------AYDDFMREKTAETLLYSLIQSSILEGINFYSGFAYFYNLVR 202 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N+M G + +I RDE H F +VI I ENP L T A LE Sbjct: 203 QNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDALTDYVHQAFAHAIELET 262 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVID--LK 330 + E + G G++ +Y+++ AN+ +G++ L+ + T+N PW+ D + Sbjct: 263 QWTGEVL-DGIDGIDVEEMIRYVKYRANKMAGMLGIQTLYTETTDNVMPWIRAYADNFTE 321 Query: 331 KEKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 322 TKTDFFEMRNASYKK 336 >gi|71901120|ref|ZP_00683227.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|182681036|ref|YP_001829196.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa M23] gi|71729125|gb|EAO31249.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|182631146|gb|ACB91922.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M23] gi|307579504|gb|ADN63473.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa subsp. fastidiosa GB514] Length = 349 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 75/315 (23%), Positives = 140/315 (44%), Gaps = 20/315 (6%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSESL 95 + Y + Y N W+P EV M+ D K + G L+ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNFWIPDEVDMKID----KRQYGELSAREKNAYDAIIGLLATLDS- 93 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVP 153 + + ++++P +E +H+ ++ Y++ S+ ++ +F + R P Sbjct: 94 PQTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLANQNRVFEIARTHP 153 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 +I + +Q ++ ++ E L + + EG+ FY+GFA +L R Sbjct: 154 TILKRNAPIMQ--------AYDDFMREKTAETLLYSLIQSSILEGINFYSGFAYFYNLVR 205 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N+M G + +I RDE H F +VI I ENP L T A LE Sbjct: 206 QNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDALTDYVHQAFAHAIELET 265 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVID--LK 330 + E + G G++ +Y+++ AN+ +G++ L+ + T+N PW+ D + Sbjct: 266 QWTGEVL-DGIDGIDVEEMIRYVKYRANKMAGMLGIQTLYTETTDNVMPWIRAYADNFTE 324 Query: 331 KEKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 325 TKTDFFEMRNASYKK 339 >gi|194366071|ref|YP_002028681.1| ribonucleotide-diphosphate reductase subunit beta [Stenotrophomonas maltophilia R551-3] gi|194348875|gb|ACF51998.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia R551-3] Length = 346 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/314 (23%), Positives = 138/314 (43%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N E+ +G A+ +S Sbjct: 36 IPYPSFYRAYKELSTNFWIPDEVDMKLDARQYGELNAR---EKNAYDSIIGLLATLDS-P 91 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 92 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLSNQNRIFEIARTHPT 151 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ ++ E L + + EG+ FY+GFA ++ R Sbjct: 152 II-KRNAPIM-------GAYDDFMREKTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQ 203 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I ENP L T E A LE Sbjct: 204 NRMNGTGKIISFINRDELAHTKFISELIRAIIGENPELQTNELTAYVHQSFEHAIELETQ 263 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 ++ E + G G++ +Y+++ AN+ +G+E L+ T+N PW+ D + Sbjct: 264 WSSEVL-DGIDGIDVDEMVRYVKYRANKMAGMLGIERLYSDTTDNVMPWIKAYADNFTET 322 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 323 KTDFFEMRNASYKK 336 >gi|190574752|ref|YP_001972597.1| ribonucleotide-diphosphate reductase subunit beta [Stenotrophomonas maltophilia K279a] gi|190012674|emb|CAQ46302.1| putative ribonucleoside-diphosphate reductase beta chain [Stenotrophomonas maltophilia K279a] Length = 346 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/314 (23%), Positives = 138/314 (43%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N E+ +G A+ +S Sbjct: 36 IPYPSFYRAYKELSTNFWIPDEVDMKLDARQYGELNAR---EKNAYDSIIGLLATLDS-P 91 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 92 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLPNQNRIFEIARTHPT 151 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ ++ E L + + EG+ FY+GFA ++ R Sbjct: 152 II-KRNAPIM-------GAYDDFMREKTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQ 203 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I ENP L T E A LE Sbjct: 204 NRMNGTGKIISFINRDELAHTKFISELIRAIIGENPELQTNELTAYVHQSFEHAIELETQ 263 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 ++ E + G G++ +Y+++ AN+ +G+E L+ T+N PW+ D + Sbjct: 264 WSSEVL-DGIDGIDVDEMVRYVKYRANKMAGMLGIERLYSDTTDNVMPWIKAYADNFTET 322 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 323 KTDFFEMRNASYKK 336 >gi|215275540|sp|P0C8I2|RIR2_ASFWA RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 34/320 (10%) Query: 34 LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K L + W EV M D+ W++ + +R K+ L FF Sbjct: 14 IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVV 68 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148 ++ +V N++ R + E + QA +E VHS + + +L DE E +F+ Sbjct: 69 ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 128 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 + P I A W Q+ D + L + V + EG+ F F I Sbjct: 129 IEKHPIIKKMAQWVRQWM-------------DPTKNSLGERLVGFAAVEGILFQNHFVAI 175 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 L N M G+ ++I RDE +H +F +I+ P ++ +L EA Sbjct: 176 QFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------EKIIHKILKEA 229 Query: 269 TLLE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 L I+YA + G + QY+++ + C + + ++K NPFP M++ Sbjct: 230 VELVDEFISYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYK-VGNPFPQMTK 288 Query: 326 VIDLKKEK-NFFETRVTEYQ 344 + EK NFFE R T+YQ Sbjct: 289 FFLNEVEKTNFFELRPTQYQ 308 >gi|49237365|ref|YP_031646.1| ribonucleoside diphosphate reductase beta subunit-like protein [Frog virus 3] gi|47060183|gb|AAT09727.1| ribonucleoside diphosphate reductase beta subunit-like protein [Frog virus 3] Length = 387 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/319 (23%), Positives = 137/319 (42%), Gaps = 25/319 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 75 PFRYNWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 134 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYGEM 192 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 T K ++ ++ + P A V+ EG+ + F +L+ R+ Sbjct: 193 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 239 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-----QQKSRTMLHEATL 270 KM G+ + ++ +RDE++H+ + + E P + TK+ + R E Sbjct: 240 KMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDLIELFKEDAERVAELEEAF 299 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN--PFPWMSEVID 328 +++A+ E P GL + Y+ ++ N R +GL L + P PW+ +ID Sbjct: 300 VDLAF-QECGP--VCGLEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356 Query: 329 LKKEKNFFETRVTEYQQGA 347 NFFE VTEY+ G Sbjct: 357 GADLTNFFENHVTEYETGG 375 >gi|78049716|ref|YP_365891.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038146|emb|CAJ25891.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 347 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ ++ E L + + EG+ FY+GFA +L R Sbjct: 153 II-KRNAPIM-------GAYEDFMREKTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQ 204 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I EN L E A LE Sbjct: 205 NRMTGTGKIISFINRDELAHTKFISELIRAIIGENQALQGDELTDYVHKAFEHAIDLETQ 264 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 + E + G G++ +Y+++ AN+ +G+E L++ +N PW+ D + Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 324 KTDFFEMRNASYKK 337 >gi|330949821|gb|EGH50081.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae Cit 7] Length = 65 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 42/65 (64%), Positives = 48/65 (73%) Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 N E Y++FIANRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G Sbjct: 1 NGAGMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGG 60 Query: 348 ELKWD 352 L WD Sbjct: 61 ALSWD 65 >gi|190896512|gb|ACE96769.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896530|gb|ACE96778.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E +HS + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESCAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDWM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|78486104|ref|YP_392029.1| ribonucleotide-diphosphate reductase subunit beta [Thiomicrospira crunogena XCL-2] gi|78364390|gb|ABB42355.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Thiomicrospira crunogena XCL-2] Length = 377 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/287 (26%), Positives = 132/287 (45%), Gaps = 19/287 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 55 WRPEEIDLSSDRGEYA---NLPEHEKHVFISNLKYQTLLDSVQGRSPNVALLPLVSIPEL 111 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + + S+T + + T Sbjct: 112 ETWIETWSFSETIHSRSYTHIIRNIVSDPSLVFDDIVANEEIVKRAISVTVYYDKLINLT 171 Query: 167 QTLSSPSFTTGTKDA-DQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAE 222 + + T DA +E LF+ V V E + FY FA S + M G A+ Sbjct: 172 NRMYAEEIDLETNDAFRKEIKTALFLTIVSVNVLEAIRFYVSFACSFSFAERSLMEGNAK 231 Query: 223 QYQYIMRDESLHLNFGIDVINQIK--IENPHLW--TKEFQQKSRTMLHEATLLEIAYAHE 278 + I RDE+LHL+ +IN + ++P + KE ++K + EA E +A Sbjct: 232 IIKLIARDEALHLSGTQHLINILSEGKDDPEMMEIAKENEEKVYEIFREAAEQEKEWADY 291 Query: 279 TMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 G +GLNA + Y+++I N R I L P+F+ NP PWM+ Sbjct: 292 LFKDGSMIGLNASILKDYVEYITNTRIKAIKLNPIFENKSNPLPWMN 338 >gi|190896536|gb|ACE96781.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896560|gb|ACE96793.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896566|gb|ACE96796.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E + S + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + F + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDWM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|190896544|gb|ACE96785.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E + S + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + F + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDWM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|190896550|gb|ACE96788.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E +HS + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + F + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 A + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 AFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|228861279|ref|YP_002854302.1| ribonucleotide reductase small subunit [Soft-shelled turtle iridovirus] gi|45550045|gb|AAS67856.1| ribonucleotide reductase small subunit [Rana grylio virus 9506] gi|194307559|gb|ACF42289.1| ribonucleotide reductase small subunit [Soft-shelled turtle iridovirus] Length = 387 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/319 (23%), Positives = 137/319 (42%), Gaps = 25/319 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 75 PFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 134 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYGEM 192 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 T K ++ ++ + P A V+ EG+ + F +L+ R+ Sbjct: 193 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 239 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-----QQKSRTMLHEATL 270 KM G+ + ++ +RDE++H+ + + E P + TK+ + R E Sbjct: 240 KMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDLIELFKEDAERVAELEEAF 299 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN--PFPWMSEVID 328 +++A+ E P GL + Y+ ++ N R +GL L + P PW+ +ID Sbjct: 300 VDLAF-QECGP--VCGLEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356 Query: 329 LKKEKNFFETRVTEYQQGA 347 NFFE VTEY+ G Sbjct: 357 GADLTNFFENHVTEYETGG 375 >gi|50288235|ref|XP_446546.1| hypothetical protein [Candida glabrata CBS 138] gi|49525854|emb|CAG59473.1| unnamed protein product [Candida glabrata] Length = 335 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 77/327 (23%), Positives = 141/327 (43%), Gaps = 30/327 (9%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M N R V + P+KY W Y W ++ + D+ W++ L+ ++ Sbjct: 12 MENKRRFV--MFPIKYHEIWAAYKKVEAAFWTAEDMELAKDVKDWET---LSAGQKEFFG 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLD 141 L + ++++V NIV L NPE + + Q E ++ + ++ +L +D Sbjct: 67 NYLAICSRTDNIVNKNIVEKFSAELQNPEGKSFYGFQIMMENIYDEIYSMLVDALFTSVD 126 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 LF + + AK+ WA ++ D+ + V EG++ Sbjct: 127 NIPLFKAVCQQEEVKAKSEWAHRWVFD-------------DESLYAERLVASAAREGIFM 173 Query: 202 YTGFAQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FA + L + M G+A +I RD + +F + HL TK + Sbjct: 174 SGAFAALYWLTKEKGIMPGVAMATNHICRDRGFYADFACLLF-------AHLKTKPNPKI 226 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E A+ +MP +G++ +QY++ +A++ G E + T NPF Sbjct: 227 IEQIITEAVEIEKAHYRNSMPIEKLGMDLKEIDQYIESVADKLLVSFGNEKFYNAT-NPF 285 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 P+M E + K NFFE +V++YQ+ + Sbjct: 286 PFMEEATSIGK-TNFFEKKVSDYQKAS 311 >gi|21244791|ref|NP_644373.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas axonopodis pv. citri str. 306] gi|325927516|ref|ZP_08188754.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans 91-118] gi|21110489|gb|AAM38909.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas axonopodis pv. citri str. 306] gi|325542109|gb|EGD13613.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans 91-118] Length = 347 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ ++ E L + + EG+ FY+GFA +L R Sbjct: 153 II-KRNAPIM-------GAYEDFMREKTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQ 204 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I EN L E A LE Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDELTDYVHKAFEHAIDLETQ 264 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 + E + G G++ +Y+++ AN+ +G+E L++ +N PW+ D + Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 324 KTDFFEMRNASYKK 337 >gi|326784480|ref|YP_004325029.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7] gi|310004513|gb|ADO98905.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7] Length = 388 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 89/327 (27%), Positives = 142/327 (43%), Gaps = 44/327 (13%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D A + LTD ++ + NL + +S+ +A + S PE Sbjct: 58 WRPEEVSLQKDRADYAQ---LTDQQKHIFTSNLKYQIMLDSVQGRAPGMAFIPYCSLPEL 114 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-----------NWA 162 + F E +HS ++ YII ++ D ELF+ +I ++A N+A Sbjct: 115 EGCMQVWQFMEMIHSRSYTYIIKNVYSDPSELFDTILTDDNILSRAESVTKSYDDFINYA 174 Query: 163 LQYTQT------LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 +Y Q+ + S + T+ +++L + EG+ FY FA + G Sbjct: 175 HEYDQSNAWKEDMRSHPNSEWTRRDLKKYLYKAVANVNILEGIRFYVSFACSFAFGENKL 234 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT------------KEFQQKSRTM 264 M G A+ I RDES HL V+ Q ++N WT +E Q+ M Sbjct: 235 MEGSAKILSLIARDESQHL-----VLTQQILKN---WTEGKDDPEMKEIAEEEQETVEQM 286 Query: 265 LHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFP 321 E A+A+ +G +GLN Y+++IANRR IGL+P++ NP P Sbjct: 287 FKACVDEEKAWANYLFKEGSMIGLNERLLHNYVEWIANRRMKAIGLKPIYDQPLRNNPLP 346 Query: 322 WMSEVIDLKKEKNF-FETRVTEYQQGA 347 W ++ K ++N ET + Y G Sbjct: 347 WTEHWLNSKGQQNAPQETEIESYVVGG 373 >gi|188578920|ref|YP_001915849.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523372|gb|ACD61317.1| ribonucleoside-diphosphate reductase, beta subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 347 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ ++ E L + + EG+ FY+GFA +L R Sbjct: 153 II-KRNAPIM-------GAYEDFMREKTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQ 204 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I EN L E A LE Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDELTDYVHKAFEHAIDLETQ 264 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 + E + G G++ +Y+++ AN+ +G+E L++ +N PW+ D + Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 324 KTDFFEMRNASYKK 337 >gi|215275539|sp|P0C8I1|RIR2_ASFP4 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 83/320 (25%), Positives = 137/320 (42%), Gaps = 34/320 (10%) Query: 34 LLPLKY--GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 + P+++ W W K L + W EV M D+ W++ + +R K+ L FF Sbjct: 14 IFPIQHPECWNWYKKLESLT--WTAQEVDMCKDIDDWEA---MPKSQREFYKQILAFFVV 68 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNM 148 ++ +V N++ R + E + QA +E VHS + + +L DE E +F+ Sbjct: 69 ADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSG 128 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 + P I A W Q+ D + L + V + EG+ F F I Sbjct: 129 IEKHPIIKKMAQWVRQWM-------------DPTKNSLGERLVGFAAVEGILFQNHFVAI 175 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 L N M G+ ++I RDE +H +F +I+ P ++ +L EA Sbjct: 176 QFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------ERIIHKILKEA 229 Query: 269 TLLE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 L I YA + G + QY+++ + C + + ++K NPFP M++ Sbjct: 230 VELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYK-VGNPFPQMTK 288 Query: 326 VIDLKKEK-NFFETRVTEYQ 344 + EK NFFE R T+YQ Sbjct: 289 FFLNEVEKTNFFELRPTQYQ 308 >gi|332708567|ref|ZP_08428541.1| ribonucleotide reductase, beta subunit [Lyngbya majuscula 3L] gi|332352664|gb|EGJ32230.1| ribonucleotide reductase, beta subunit [Lyngbya majuscula 3L] Length = 344 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 82/337 (24%), Positives = 149/337 (44%), Gaps = 33/337 (9%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ QL ++Y WA Y N W+P ++ + D+ + + LT ER L + Sbjct: 26 TNLMQLNDVRYAWAIGLYQQMRENFWIPQKLDLTQDVTDY---SNLTPAERYAYDGILSY 82 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 +S+ NI I ++ PE + Q +E +H+ ++QYII ++ E +++ Sbjct: 83 LTFLDSVQTCNIP-HIKSSITAPEVSLCMAEQISQEGMHNQSYQYIIETVIPTEHRSKVY 141 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYT 203 +R + + + + Q K D ++ FV + + EGM+FY Sbjct: 142 EFWRTDKVLRDRCEFVASFYQ-----------KYVDNPTPENYFVSLLADFLLEGMYFYN 190 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF +L M G A+ ++ I RDE H+ +I P+ + ++ + Sbjct: 191 GFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIPMAMDVFPYSSEQIYEMFATA 250 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPF 320 + HE + + + +G+ S E Y +++AN R IGL+PL+K Y ++P+ Sbjct: 251 VEHEC-----RWTNHIVGNDILGITERSTEHYTKYLANIRLRSIGLDPLYKGENYQKSPY 305 Query: 321 PWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 + D KK+ NFFE VT Y + + WD Sbjct: 306 SHLERFSDTKKDAHTKANFFEASVTSYVMSSGVSGWD 342 >gi|166710317|ref|ZP_02241524.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzicola BLS256] Length = 347 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ ++ E L + + EG+ FY+GFA +L R Sbjct: 153 II-KRNAPIM-------GAYEDFMREKTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQ 204 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I EN L E A LE Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDELTDYVHKAFEHAINLETQ 264 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 + E + G G++ +Y+++ AN+ +G+E L++ +N PW+ D + Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 324 KTDFFEMRNASYKK 337 >gi|15079087|ref|NP_149839.1| 376L [Invertebrate iridescent virus 6] gi|82012049|sp|Q91FE8|RIR2_IIV6 RecName: Full=Probable ribonucleoside-diphosphate reductase small subunit 376L; AltName: Full=Ribonucleotide reductase small subunit gi|15042456|gb|AAK82236.1|AF303741_377 376L [Invertebrate iridescent virus 6] Length = 360 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 85/342 (24%), Positives = 145/342 (42%), Gaps = 36/342 (10%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N P Y + K+ +HW+P+EVPM DD+ W KN L D++R + FF Sbjct: 8 NYYKPFTYPEFYNKWDKHEKSHWLPSEVPMHDDVNDW--KNRLNDNQRDFLTNIFRFFTQ 65 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMY 149 + VA+ PE + A E VH + Y++ +LG+ E F MY Sbjct: 66 GDVDVASAYYTQYLPFFKLPEVTMMMGGFAGREGVHIDAYSYLLETLGMPEATYKEFLMY 125 Query: 150 REVPSITAKANWALQYTQT---LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 E+ K ++ +++ + L T+D + + +F EGM ++ FA Sbjct: 126 EEMKD---KQDYIKKFSDSRHILGKGEENLTTEDKEH-IAAGIALFSGFTEGMQLFSTFA 181 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN--------PHLWTKEFQ 258 +L M G+ + + + DE+ H I++ EN P + + Sbjct: 182 MLLIFPLNGFMKGMGQIVTWSIVDETQHTEGMIELFKVFVEENKTGDQPIRPSVLQETVY 241 Query: 259 QKSRTM--LHEATLLEIAYAHETMP------------KGFVGLNAPSCEQYMQFIANRRC 304 + ++ M L EA + + ++ P K F GL + Y+++IA+RR Sbjct: 242 KIAKEMVGLEEAFIDLVFKKYKDEPINDDNDLETKDNKDFFGLTPQRLKAYIKYIADRRL 301 Query: 305 HQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + +G + +F Y NP P + +I+ NFFE R T+Y Sbjct: 302 NLMGYKSIFNLEPYPTNPLPELEIMINAPTHTNFFENRSTDY 343 >gi|58580098|ref|YP_199114.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622097|ref|YP_449469.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58424692|gb|AAW73729.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366037|dbj|BAE67195.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 347 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 76/314 (24%), Positives = 139/314 (44%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ ++ E L + + EG+ FY+GFA +L R Sbjct: 153 II-KRNAPIM-------GAYEDFMREKTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQ 204 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I EN L E A LE Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDELTDYVHKAFEHAIDLETQ 264 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 + E + G G++ +Y+++ AN+ +G+E L++ +N PW+ D + Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 324 KTDFFEMRNASYKK 337 >gi|326784253|ref|YP_004324793.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5] gi|310003484|gb|ADO97880.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5] Length = 388 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 85/319 (26%), Positives = 142/319 (44%), Gaps = 29/319 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + +++ L+ +++ + NL + +S+ +A + S PE Sbjct: 59 WRPEEVSLQKDRSDYQT---LSPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 115 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-----------NWA 162 + F E +HS ++ YII ++ D GE+F+ + ++ +A N A Sbjct: 116 EACMTVWEFMEMIHSRSYTYIIKNVYPDPGEVFDTILDDENVMERASSVTESYDDFINHA 175 Query: 163 LQYTQ----TLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRAN 215 +Y L+ TTG D E + L+ + EG+ FY FA + G Sbjct: 176 HEYDNGQMWNLARDGHTTGMYDR-HELKRKLYRAVANVNILEGIRFYVSFACSFAFGENK 234 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIK-IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ I RDES HL +++ + K ++P + KE + + M E Sbjct: 235 LMEGSAKILSLIARDESQHLVITQNILRKWKEGDDPEMKEIAKEEKGWVQHMFERTVNEE 294 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDL 329 +A +G +GLN Y+++IANRR IGL+P+F NP PW ++ Sbjct: 295 KVWADYLFKQGSMIGLNDRLLHNYVEWIANRRMKSIGLDPMFDIPAKNNPLPWTEHWLNS 354 Query: 330 KKEKNFF-ETRVTEYQQGA 347 K ++N ET + Y G Sbjct: 355 KGQQNAPQETEIESYVVGG 373 >gi|324525159|gb|ADY48515.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum] Length = 240 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 95/216 (43%), Gaps = 19/216 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W Y +A + W E+ + D A W+ LTD ER I R L FFA+S+ Sbjct: 23 IFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWEK---LTDGERFFISRVLSFFAASD 79 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 +V N+ + PE R + Q E VHS + +I + D E F+ Sbjct: 80 GIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVHSEMYSKMIEAYIKDPKEQMVHFDAIH 139 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + I KA+WAL++ +SP F L F V EG+ F FA I Sbjct: 140 QFECIKKKADWALRWIDDRNSP------------FPVRLIAFAAV-EGIMFSGSFAAIFW 186 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 L + M G+ + I RDE LH +F + IK Sbjct: 187 LKKRGVMKGLTHSNELISRDEGLHRDFACLLYKYIK 222 >gi|308806626|ref|XP_003080624.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus tauri] gi|116059085|emb|CAL54792.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus tauri] Length = 241 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 23/207 (11%) Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 ++ LF +P + KA+WAL++ D+ F + L F + EG++ Sbjct: 39 EKSHLFRAIETIPCVKKKADWALKWI-------------DSSDSFAERLLAFACI-EGIF 84 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F ++ Q+ P ++ Sbjct: 85 FSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFAC-LLYQMLNNKPD------EEV 137 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R ++ EA +E + +++P VG+NA Y++++A+ +G+ P T NPF Sbjct: 138 VRKIVTEAVEIEKEFVCDSLPCALVGMNAGMMSDYIEYVADHLFTSLGM-PKEYNTANPF 196 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA 347 WM E+I L+ + NFFE RV EYQ+ Sbjct: 197 DWM-ELISLQGKTNFFEKRVGEYQKAG 222 >gi|307171465|gb|EFN63309.1| Ribonucleoside-diphosphate reductase subunit M2 [Camponotus floridanus] Length = 343 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 77/315 (24%), Positives = 131/315 (41%), Gaps = 46/315 (14%) Query: 5 TGLSPIQAGEK-----RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 +GLS +A +K N + + +L + + P++Y W+ Y A + W EV Sbjct: 40 SGLSKTKAVQKVQLKEEFNPELEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASFWTIEEV 99 Query: 60 PMQD-DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118 P+ D W+ K L DER I L FFA+S+ +V N++ + + E R + Sbjct: 100 PLHKLDKKDWEEK--LNSDERYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYG 157 Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFT 175 Q E +HS + +I + D E LFN +PS+ KANWAL + Sbjct: 158 FQIAIENIHSEMYSLLIETYISDPKEKDFLFNAIETLPSVGKKANWALNWINH------- 210 Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 E F I L + M G+ + I RDE LH Sbjct: 211 ---------------------ESATFPERVVAIFWLKKRGVMPGLTFSNELISRDEGLHC 249 Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295 +F + I ++ P ++ ++++ +A +E + + +P +G+N Y Sbjct: 250 DFACLMFKHI-VQKPSF------ERVKSIIMDAVEIEQEFLTQALPVQLIGMNCTLMCSY 302 Query: 296 MQFIANRRCHQIGLE 310 ++F+A+R +G E Sbjct: 303 IEFVADRLFVALGFE 317 >gi|254796877|ref|YP_003081714.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia risticii str. Illinois] gi|254590113|gb|ACT69475.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia risticii str. Illinois] Length = 286 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 134/299 (44%), Gaps = 28/299 (9%) Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M DD+ W K + E+ ++ + FF ++ V + + PE L Sbjct: 1 MADDVQDWHHK--ICSTEKNLLTQIFRFFTQADVEVHDCYMRHYAGVFKPPEVCMMLTAF 58 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 A E +H + +++ ++G+ E E F YR++ +Y + Sbjct: 59 ANMETIHIAAYAHLLDTVGMPETEYLAFTKYRQMKE-------KCEYLKAFKM------- 104 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 D+ E + L V+ EG+ + FA +L+ R NKM G+ + Y +RDE+LH N Sbjct: 105 -DSPTEIAKTLAVYGAFTEGLQLFASFAILLNFPRFNKMKGMGQIIAYSVRDETLHSNSI 163 Query: 239 IDVINQIKIENPHLWTK---EFQQKSRTMLH-EATLLEIAYAHETMPKGFVGLNAPSCEQ 294 + +EN K E ++ M+H E +++A+ + GL A ++ Sbjct: 164 TKLFRTFLLENDIDKLKLEAEIREICDAMVHHEDAFIDLAFEMGDVE----GLKASEVKE 219 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352 Y+++IAN R Q+G +++ NP W+ V++ + NFFE + TEY + A + WD Sbjct: 220 YIRYIANLRLKQLGFSEIYEQKVNPLLWLEAVLNTVEHTNFFENKATEYSKAATKGTWD 278 >gi|190896538|gb|ACE96782.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896548|gb|ACE96787.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896558|gb|ACE96792.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E +HS + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + F + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|294625675|ref|ZP_06704297.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664800|ref|ZP_06730124.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600044|gb|EFF44159.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605431|gb|EFF48758.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 347 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 75/314 (23%), Positives = 139/314 (44%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 37 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 92 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 93 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 152 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ ++ E L + + EG+ FY+GFA +L R Sbjct: 153 II-KRNAPIM-------GAYEDFMREKTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQ 204 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I EN L + A LE Sbjct: 205 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDQLTDYVHKAFEHAIDLETQ 264 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 + E + G G++ +Y+++ AN+ +G+E L++ +N PW+ D + Sbjct: 265 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 323 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 324 KTDFFEMRNASYKK 337 >gi|13358428|ref|NP_078636.1| Ribonucleotide reductase small subunit [Lymphocystis disease virus 1] Length = 378 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 90/319 (28%), Positives = 138/319 (43%), Gaps = 34/319 (10%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P Y WA E N HW E+ + DD++ WK+ LT E+ I + L F + Sbjct: 74 PFHYSWAVEIRALHENIHWTEKELSLADDVSDWKT-GKLTLFEKDFIIQILRLFTQLDVS 132 Query: 96 VAN---NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYR 150 V + NI + I++ N E R L A E H + + +LGL E E F Y+ Sbjct: 133 VGHIYHNIFIPIFK---NNELRNMLCSFACREGTHQQAYALLNDTLGLPETEYSTFLNYK 189 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E+ + T N T LS + + + V EG+ + FA +L+ Sbjct: 190 EMTNKTIYMN--DMKTDNLSEIALS--------------LIKAVYNEGVVLFASFAMLLN 233 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 R M G+ + ++ +RDE++H+ + E + T+EF R + E Sbjct: 234 FQRFGTMKGMGKVIEWSIRDENIHVEGLCKLFKTFISEYSFILTEEFFSAVRKIQAEVLQ 293 Query: 271 LE-----IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG-LEPLFKYTENPFPWMS 324 LE + + + T KG L + Y+++I RR Q+G LE NP W+S Sbjct: 294 LETDFIILLFTNITEIKGLTKLCMIN---YVKYILQRRTEQLGLLESTEVLLTNPIDWIS 350 Query: 325 EVIDLKKEKNFFETRVTEY 343 +I + NFFE RVTEY Sbjct: 351 WLIAGRNITNFFENRVTEY 369 >gi|190896564|gb|ACE96795.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E +HS + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + F + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|261885428|ref|ZP_06009467.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 282 Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 71/262 (27%), Positives = 117/262 (44%), Gaps = 19/262 (7%) Query: 38 KYGWAWEKYLSACNNHW-----MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 KY WA L + W P EV DD+ + LT ++ M S Sbjct: 35 KYTWA----LKLLGSLWKQIPGFPKEVDTTDDVRDYAC--NLTTAKKRMYDLVWSQLISM 88 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 +S NN+ I +++ PE L RQA+EEA HS ++ ++ ++ + ++ M + Sbjct: 89 DSFQTNNLADNINPYITAPEINAILARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKYD 148 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ + L+ + E L V + EG++FY+GF I +L Sbjct: 149 DVLRKKNDYISSVYEELAG--------EVTDEKLLLAMVANQILEGVYFYSGFTAIYALA 200 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 RA KM+G A+ ++I RDE HL ++IN ++ E P L+T E + K M +A LE Sbjct: 201 RAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFTSEVEAKIYEMFKKAGDLE 260 Query: 273 IAYAHETMPKGFVGLNAPSCEQ 294 I + +G E+ Sbjct: 261 IEWGKYITGNQIMGFTDDIIEE 282 >gi|190896552|gb|ACE96789.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 28/240 (11%) Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWAL 163 H+S E R + Q E +HS + ++ + D E LF+ VP + KA WAL Sbjct: 9 HVS--EARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKAQWAL 66 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 ++ D + F + L F V EG++F F I L + M G+ Sbjct: 67 RWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTFS 112 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + I RDE LH +F + + ++ K +++ + ++ +A +E + + +P Sbjct: 113 NELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDALPCA 165 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE RV EY Sbjct: 166 LVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRVGEY 223 >gi|289670858|ref|ZP_06491933.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 349 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/314 (23%), Positives = 139/314 (44%), Gaps = 18/314 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N W+P EV M+ D + N L+ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNFWIPDEVDMKGDA---RQYNELSAREKNAYDSIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPS 154 + + ++++P +E +H+ ++ Y++ S+ GL D+ +F + R P+ Sbjct: 95 QTRFIYNVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPT 154 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I K N + ++ ++ E L + + EG+ FY+GFA +L R Sbjct: 155 II-KRNAPIM-------GAYEDFMREKTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQ 206 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+M G + +I RDE H F ++I I EN L + A LE Sbjct: 207 NRMTGTGKIISFINRDELAHSKFISELIRAIIGENQALQGDQLTDYVHKAFEHAIDLETQ 266 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKK 331 + E + G G++ +Y+++ AN+ +G+E L++ +N PW+ D + Sbjct: 267 WTAEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIEKLYEGANDNVMPWIKAYADNFTET 325 Query: 332 EKNFFETRVTEYQQ 345 + +FFE R Y++ Sbjct: 326 KTDFFEMRNASYKK 339 >gi|326783148|ref|YP_004323545.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2] gi|310005566|gb|ADO99954.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2] Length = 394 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 85/319 (26%), Positives = 138/319 (43%), Gaps = 29/319 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + +K+ LT +++ + NL + +S+ +A + S PE Sbjct: 65 WRPEEVSLQKDRSDYKT---LTPEQKHIYTSNLKYQIMLDSVQGRGPGMAFMPYCSLPEL 121 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169 + E +HS ++ YII ++ D E+F+ + P I ++A + L Sbjct: 122 ESAMNVWQLMEMIHSRSYTYIIKNVYPDASEVFDTVLDDPKIMSRAESVTKAYDDLINSE 181 Query: 170 -----------SSPSFTTGTKDADQEFLQDLF--VFYV-VFEGMWFYTGFAQILSLGRAN 215 ++ GT D +E + L+ V V + EG+ FY FA + G Sbjct: 182 HEFDSGNAWKFAAEGHPAGTYDR-KELKRKLYRAVLNVNILEGIRFYVSFACSFAFGELK 240 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK---EFQQKSRTMLHEATLLE 272 M G A+ I RDES HL +I + + + + E + M A E Sbjct: 241 VMEGSAKIISLIARDESQHLVLTQQIIKKWQDGDDEEMVRIAEEEKPNVLKMFQNAVEEE 300 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWMSEVIDL 329 A+A G +GLN QY++F ANRR IGL+P++ + NP PW ++ Sbjct: 301 KAWAQYLFKNGSMIGLNEKLLGQYVEFTANRRMKAIGLDPIYDISPRNNPLPWTQYWLNS 360 Query: 330 KKEKNFF-ETRVTEYQQGA 347 K ++N ET + Y G Sbjct: 361 KGQQNAPQETEIESYVIGG 379 >gi|190896526|gb|ACE96776.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E + S + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + F + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ Y NPF M E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVY-YVANPFDGM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|45686047|ref|YP_003810.1| unknown [Ambystoma tigrinum virus] gi|37722471|gb|AAP33216.1| unknown [Ambystoma tigrinum stebbensi virus] Length = 387 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/319 (23%), Positives = 136/319 (42%), Gaps = 25/319 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 75 PFRYAWAENIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 134 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 192 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 T K ++ ++ + P A V+ EG+ + F +L+ R+ Sbjct: 193 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 239 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-----QQKSRTMLHEATL 270 KM G+ + ++ +RDE++H+ + + E P + T++ + R E Sbjct: 240 KMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTEDLIELFKEDAERVAELEEAF 299 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN--PFPWMSEVID 328 +++A+ E P GL + Y+ ++ N R +GL L + P PW+ +ID Sbjct: 300 VDLAF-QECGP--VCGLEPKQVKDYVLYVINLRASNMGLPRLIERAPEACPIPWVKWLID 356 Query: 329 LKKEKNFFETRVTEYQQGA 347 NFFE VTEY+ G Sbjct: 357 GADLTNFFENHVTEYETGG 375 >gi|156340310|ref|XP_001620415.1| hypothetical protein NEMVEDRAFT_v1g148226 [Nematostella vectensis] gi|156205304|gb|EDO28315.1| predicted protein [Nematostella vectensis] Length = 224 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 20/224 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P+K+ WE Y + W E+ + D+ W +K L +DE+ IK Sbjct: 7 ILQENKDRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDITDWNTK--LNEDEKYFIK 64 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E + + Q E +HS T+ +I + DE Sbjct: 65 HILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKDEV 124 Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E LF+ P+I KA WAL++ ++ S F + L F V EG++ Sbjct: 125 EKDKLFHAIEVFPAIKRKAEWALKWIESDS--------------FAERLIAFAAV-EGIF 169 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F F I L + M G+ + I RDE +H +F + + N Sbjct: 170 FSGAFCSIFWLKKRGLMPGLTFSNELISRDEGVHCDFAVHIHNH 213 >gi|132618|sp|P26713|RIR2_ASFM2 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 80/318 (25%), Positives = 134/318 (42%), Gaps = 30/318 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+++ W Y + W EV M D+ W++ + +R K+ L FF ++ Sbjct: 14 IFPIQHPECWNWYKKLESMTWTAQEVDMCKDIDDWEA---MPKPQREFYKQILAFFVVAD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ R + E + QA +E VHS + + +L DE E +F+ Sbjct: 71 EIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPDEKEQQRIFSGIE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + P I A W Q+ D + L + V + EG+ F F I Sbjct: 131 KHPIIKKMAQWVRQWM-------------DPARNSLGERLVGFAAVEGILFQNHFVAIQF 177 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L N M G+ ++I RDE +H +F +I+ P ++ +L EA Sbjct: 178 LKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------EKIIHKILKEAVE 231 Query: 271 LE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 L I YA + G + QY+++ + C + + ++ NPFP M++ Sbjct: 232 LVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYN-VGNPFPQMTKFF 290 Query: 328 DLKKEK-NFFETRVTEYQ 344 + EK NFFE R T+YQ Sbjct: 291 LNEVEKTNFFELRPTQYQ 308 >gi|308049658|ref|YP_003913224.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Ferrimonas balearica DSM 9799] gi|307631848|gb|ADN76150.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Ferrimonas balearica DSM 9799] Length = 378 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 129/292 (44%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 51 WRPEEVDVTQDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 107 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D G +F+ I +A+ QY L + Sbjct: 108 ETWIETWSFYETIHSRSYTHIIRNIVNDPGVVFDDIVVNEEIQKRASDISQYYDDLIHTT 167 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F GT D + + + L++ + V E + FY FA + M Sbjct: 168 QLYQQFGEGTHDINGNKVTLTLRGLKKKLYLCLMSVNVLEAVRFYVSFACSFAFAERKLM 227 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE LHL +IN + ++P + E +S + A E Sbjct: 228 EGNAKIIRFIARDEQLHLVGTQHMINLMADGRDDPEMAEIAIECHSESIEIFRRAAEQEK 287 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 A+A G +GLN E Y++FI N R IGL PLF NP PWMS Sbjct: 288 AWASYLFKDGSMLGLNKQIIEDYVEFITNERMAGIGLPPLFDKRSNPLPWMS 339 >gi|269864946|ref|XP_002651751.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|269865852|ref|XP_002652068.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|269866233|ref|XP_002652201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220062966|gb|EED41855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063214|gb|EED41988.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063944|gb|EED42305.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 226 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 105/226 (46%), Gaps = 28/226 (12%) Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 E +HS + +I +L D+ E LFN +PSI KA WA ++ S SF T Sbjct: 10 ENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIA--SDTSFDTRC-- 65 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 66 ----------VAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACL 115 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 + H + ++ EA +E + E++P +G+N QY++F+A Sbjct: 116 L---------HKYINNKCTVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVA 166 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 +R +G + ++ + NPF +M E I L+ + NFFE R YQ+G Sbjct: 167 DRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 210 >gi|328722535|ref|XP_001944897.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Acyrthosiphon pisum] Length = 345 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/310 (24%), Positives = 135/310 (43%), Gaps = 28/310 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+ Y W Y + W V ++ DL W +TD+ER I L F A+S Sbjct: 50 IFPIIYDNIWAMYKKHEASLWNIEAVNLKSDLEDWMR---MTDEERHFISYILAFLAASN 106 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V+ N+V + + E R + Q E +HS + +I + D E L N Sbjct: 107 GIVSENLVKRFSQEVQVTEARCFYGFQIMIENIHSEMYSLLIDTYIKDPKEKETLINATE 166 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P + A+W L++ D+ F + L F V +G++ I Sbjct: 167 TMPCVKKMADWVLKWIT------------DSKATFGERLVTFAAV-KGIFLSGNVPSITW 213 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M+G+ + I RDE LH +F + HL K ++ +A Sbjct: 214 LTKRGLMLGLTFSNELIFRDEGLHTDFACLLFK-------HLDQKPPLTVITHIICKAVT 266 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +E + + VG++ +Y++F+A+R +++G +++ + NPFP+M +++ + Sbjct: 267 IEQYFLTNALLVKMVGMSCEKMAEYIEFVADRLLNELGCPAVYR-SSNPFPFM-DLLSQQ 324 Query: 331 KEKNFFETRV 340 + N FE RV Sbjct: 325 GKTNGFEKRV 334 >gi|157375444|ref|YP_001474044.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sediminis HAW-EB3] gi|157317818|gb|ABV36916.1| Ribonucleoside-diphosphate reductase [Shewanella sediminis HAW-EB3] Length = 376 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D A W+ LT+ E+ + NL + +S+ A ++ + +S PE Sbjct: 49 WRPEEIDISKDRADWQR---LTESEKHIFISNLKYQTLLDSMAARSVNAVLLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------T 166 ++ AF E +HS ++ +I+ +L + GE+F+ P+I +A +Y T Sbjct: 106 ETWVETWAFSETIHSRSYTHILRNLFTEPGEVFDDIVVNPAILKRATSIAKYFDDVILTT 165 Query: 167 QTLSSPS-----FTTGTKDADQEFLQDLFVFYV----VFEGMWFYTGFAQILSLGRANKM 217 Q L S T + L++ V E + FY FA + + Sbjct: 166 QLLQSQGEGSYEVNGETIEVSARKLKERLYLAVCSVNALEAIRFYVSFACSFAFAERELL 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQI---KIENPHL--WTKEFQQKSRTMLHEATLLE 272 G A+ + I RDE+LHL+ G I ++ ++P + +E ++ R + + E Sbjct: 226 EGNAKIIKLIARDEALHLS-GTQHILKLWANGNDDPEMVEVCQELREAGRQVFLDVVEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLNA +QY+++I+N R IG E F NP PW++ Sbjct: 285 KEWADYLFKDGSMIGLNAEILKQYIEYISNNRMEAIGYEAPFAIKNNPLPWIN 337 >gi|326782536|ref|YP_004323092.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1] gi|310002750|gb|ADO97149.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1] Length = 386 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 85/319 (26%), Positives = 142/319 (44%), Gaps = 29/319 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + +++ L+D+++ + NL + +S+ +A + S PE Sbjct: 57 WRPEEVSLQKDRSDYQT---LSDEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 113 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-----------WA 162 + F E VHS ++ YII ++ D E+F+ + + ++A+ A Sbjct: 114 EACMTVWEFMEMVHSRSYTYIIKNVYSDPSEVFDTILDDEKVMSRASSVTESYDDFIQQA 173 Query: 163 LQYTQT----LSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRAN 215 QY + L+ T G + +E + L+ + EG+ FY FA + G Sbjct: 174 HQYDGSTMWDLAREGHTAGQYER-RELKRKLYRAIANVNILEGIRFYVSFACSFAFGENK 232 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIK-IENPHLWT--KEFQQKSRTMLHEATLLE 272 M G A+ I RDES HL +++ + K ++P + KE Q M E Sbjct: 233 LMEGSAKILSLIARDESQHLVITQNILRKWKEGDDPEMAVIAKEEQPFVAEMFKRTVNEE 292 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDL 329 +A +G +GLN Y+++IANRR IGL+P+F NP PW ++ Sbjct: 293 KMWADYLFKQGSMIGLNDRLLHNYVEWIANRRMKAIGLDPIFDVPAKNNPLPWTEHWLNS 352 Query: 330 KKEKNF-FETRVTEYQQGA 347 K ++N ET + Y G Sbjct: 353 KGQQNAPQETEIESYVVGG 371 >gi|18656506|gb|AAL77807.1|AF389451_14 ribonucleoside-diphosphate reductase beta subunit [Tiger frog virus] Length = 387 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 75/319 (23%), Positives = 136/319 (42%), Gaps = 25/319 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 75 PFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 134 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYVEM 192 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 T K ++ ++ + P A V+ EG+ + F +L+ R+ Sbjct: 193 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 239 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-----QQKSRTMLHEATL 270 KM G+ + ++ +RDE++H+ + + E P + TK+ + R E Sbjct: 240 KMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDIIELFKEDAERVAELEEAF 299 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN--PFPWMSEVID 328 +++A+ E P L + Y+ ++ N R +GL L + P PW+ +ID Sbjct: 300 VDLAF-QECGP--VCELEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356 Query: 329 LKKEKNFFETRVTEYQQGA 347 NFFE VTEY+ G Sbjct: 357 GADLTNFFENHVTEYETGG 375 >gi|225734460|gb|ACO25228.1| hypothetical protein [Epizootic haematopoietic necrosis virus] Length = 387 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 74/319 (23%), Positives = 135/319 (42%), Gaps = 25/319 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 75 PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 133 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 134 VGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 192 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 T K ++ ++ + P A V+ EG+ + F +L+ R Sbjct: 193 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRRG 239 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-----QQKSRTMLHEATL 270 KM G+ + ++ +RDE++H+ + + E P + ++ + R E Sbjct: 240 KMKGMGKVVEWSVRDENMHVEGVSKLFETLNSEYPWVVNEDLIELFKEDAERVAELEEAF 299 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN--PFPWMSEVID 328 +++A+ E P GL + Y+ ++ N R +GL L + P PW+ +ID Sbjct: 300 VDLAF-QECGP--VCGLEPKQVKDYVLYVINLRASNMGLPRLIERAPEACPIPWVKWLID 356 Query: 329 LKKEKNFFETRVTEYQQGA 347 NFFE VTEY+ G Sbjct: 357 GADLTNFFENHVTEYETGG 375 >gi|154283275|ref|XP_001542433.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1] gi|150410613|gb|EDN06001.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1] Length = 255 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 94/207 (45%), Gaps = 26/207 (12%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TG+ ++A E + + R + L PLKY W+ Y A + W E+ + D Sbjct: 70 TGVKALEADEPLLQENPNRFV--------LFPLKYHEIWQMYKKAEASFWTAEEIDLSKD 121 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W N L DDER I L FFA+S+ +V N+V + PE R + Q E Sbjct: 122 LHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMME 179 Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 +HS T+ +I + + + LF+ +P I KA+WA+++ + D Sbjct: 180 NIHSETYSLLIDTYIKEPKQRTYLFDAIETIPCIRKKADWAIRWIE------------DK 227 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQI 208 D F Q L F V EG++F FA I Sbjct: 228 DSTFAQRLVAFAAV-EGIFFSGSFASI 253 >gi|294877483|ref|XP_002768004.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus ATCC 50983] gi|239870142|gb|EER00722.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus ATCC 50983] Length = 247 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 29/233 (12%) Query: 109 SNPECRQYLLRQA-FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 ++ E + Y R+A + A HS+TF ++ +F +PS+ KA WAL + Sbjct: 19 TSTETKHY--REALYATAEHSNTF----IEDAQEKERIFEAIETIPSVQHKAEWALAWIN 72 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V Y EG+ F F + L + M G+ + I Sbjct: 73 --------------DDNCFAERLVAYACVEGILFSGSFCALFWLKKRGLMPGLTFSNELI 118 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE LH +FG + N +K +T+ +++ ++ A +E + + +P G +G+ Sbjct: 119 SRDEGLHTDFGCLLYNMLK------FTRLPEERVEDIVRSAVNVEREFITDALPVGLIGM 172 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 NA +Y++F+A+R +G ++ + NPF WM+ +I L+ + NFFE RV Sbjct: 173 NAELMGRYIEFVADRLLVALGYAKIYN-SANPFDWMT-MISLQGKTNFFEKRV 223 >gi|149392653|gb|ABR26129.1| ribonucleoside-diphosphate reductase small chain [Oryza sativa Indica Group] Length = 233 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 112/256 (43%), Gaps = 26/256 (10%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y A + W EV + D W + L+ DER + L FFA+S+ Sbjct: 1 MFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDA--ALSPDERHFVSHVLAFFAASD 58 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + E R + Q E +HS + ++ + D+ E LF Sbjct: 59 GIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDVEKDRLFRAID 118 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP++ KA+WA+++ D + F + L F V EG++F F I Sbjct: 119 TVPAVRRKADWAMRWI-------------DGGERFAERLVAFACV-EGIFFSGSFCAIFW 164 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + ++ K + + + ++ +A Sbjct: 165 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLR-------GKLDESRVQEIVADAVD 217 Query: 271 LEIAYAHETMPKGFVG 286 +E + + +P VG Sbjct: 218 IEREFVCDALPVALVG 233 >gi|190896510|gb|ACE96768.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896556|gb|ACE96791.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896562|gb|ACE96794.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E +HS + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESCAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|190896532|gb|ACE96779.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896554|gb|ACE96790.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E + S + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + F + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|190896520|gb|ACE96773.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E +HS + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESCAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|190896516|gb|ACE96771.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E + S + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + F + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESFAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|190896518|gb|ACE96772.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E + S + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESCAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ Y NPF M E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVY-YVANPFDGM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|255023762|ref|ZP_05295748.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J1-208] Length = 284 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/278 (23%), Positives = 127/278 (45%), Gaps = 15/278 (5%) Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L++ E+ +G A+ +S + I ++++P A +E +H+ ++ Sbjct: 7 ALSEQEKYAFDAIIGLLATLDS-PQTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYS 65 Query: 133 YIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 Y++ S+ ++ +F + R P+I + + ++ + E L Sbjct: 66 YVLASITNLQEQNRVFELARTHPTIIKRNEPIMD--------AYDDFMNNKTGETLVKAL 117 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 + + EG+ FY+GFA +L R NKM G + +I RDE H F +VI I ENP Sbjct: 118 IQSSILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENP 177 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 L T E + + A LE ++ E + +G G++ Y+++ AN+ +G+ Sbjct: 178 ELQTDELVEYTHDAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIP 236 Query: 311 PLFK-YTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 L+ +++N W+ D + + +FFE R + Y++ Sbjct: 237 ELYPGHSDNTMTWIKAYADNFTETKTDFFEMRNSSYKK 274 >gi|88801048|ref|ZP_01116596.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp. MED297] gi|88776187|gb|EAR07414.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp. MED297] Length = 369 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 132/285 (46%), Gaps = 19/285 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D K L ++E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDLQRDR---KDFIALPENEKHIFLSNLKYQTLLDSVQGRSPNVAFLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ AF E VHS ++ +II ++ + ++F P I +A + + Y Q ++ Sbjct: 106 ETWIETWAFSETVHSRSYTHIIRNIVTEPDQIFEDIVTTPEIIERAESISGYYDQLIAGV 165 Query: 173 SFTTGTKDADQE--------FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 + + D+E L V V E + FY FA + +M G A+ Sbjct: 166 QKYHLSSETDRESQLHELKRLLLLTMVSVNVLEAIRFYVSFACSFAFAEGARMEGNAKLI 225 Query: 225 QYIMRDESLHLNFGIDVINQIKI---ENPHLW--TKEFQQKSRTMLHEATLLEIAYAHET 279 + I RDE+LHL+ G + I + + ++P + E Q R + +A E A+A+ Sbjct: 226 KLIARDEALHLS-GTEFILRQWLHGGDDPQMQIVADEEQATIRQIFEDAAEQEKAWANYL 284 Query: 280 MPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 G +GLNA QY++++ ++R + L P++ +NP PWM Sbjct: 285 FNDGSMIGLNAEILHQYIEYLTDQRLDALSLSPIYGRRDNPLPWM 329 >gi|61806369|ref|YP_214728.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4] gi|61563913|gb|AAX46968.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4] Length = 387 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 85/319 (26%), Positives = 139/319 (43%), Gaps = 29/319 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D ++ LT +++ + NL + +S+ +A + S PE Sbjct: 58 WRPEEVSLQKDRGDYQQ---LTPEQKHIFTSNLKYQIMLDSVQGRAPGMAFAPYCSLPEL 114 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF-------NMYREVPSITAK----ANWA 162 + F E +HS ++ YII ++ D E+F N+ + S+T N A Sbjct: 115 EGCINVWQFMEMIHSRSYTYIIKNVYSDPSEVFDTIIKDTNILQRAESVTKSYDDFVNDA 174 Query: 163 LQYTQ----TLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRAN 215 +Y + GT D +E + L+ + EG+ FY FA + G Sbjct: 175 HEYDSGNAWKFAREGHPAGTLDR-RELKRKLYRAIANVNILEGIRFYVSFACSFAFGENK 233 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQ-IKIENPHLWTKEFQQKS--RTMLHEATLLE 272 M G A+ I RDES HL ++ + ++P + ++KS + M E Sbjct: 234 LMEGSAKILSLISRDESQHLVITQQILKKWADGDDPEMQEIAKEEKSFVKDMFRNTVNEE 293 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFPWMSEVIDL 329 A+A +G +GLNA Y+++IANRR IGL+P++ NP PW ++ Sbjct: 294 KAWADYLFKEGSMIGLNARLLNNYVEWIANRRMKAIGLDPIYDQPLRNNPLPWTEHWLNS 353 Query: 330 KKEKNFF-ETRVTEYQQGA 347 K ++N ET + Y G Sbjct: 354 KGQQNAPQETEIESYVIGG 372 >gi|28393533|gb|AAO42187.1| putative ribonucleoside-diphosphate reductase small chain [Arabidopsis thaliana] Length = 243 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 23/193 (11%) Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 +T KA WA+++ + Q F + + F V EG++F F I L + Sbjct: 51 VTKKAEWAMKWI-------------NGSQSFAERIVAFACV-EGIFFSGSFCSIFWLKKR 96 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 M G+ + I RDE LH +F + + ++ TK + + + ++ +A +E Sbjct: 97 GLMPGLTFSNELISRDEGLHCDFACLIYSLLR-------TKFDEDRLKAIVCDAVEIERE 149 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 + + + VG+N QY++F+A+R +G ++ T NPF WM E+I L+ + N Sbjct: 150 FVCDALSCALVGMNRELMSQYIEFVADRLLAALGCGKVYGVT-NPFDWM-ELISLQGKTN 207 Query: 335 FFETRVTEYQQGA 347 FFE RV EYQ+ + Sbjct: 208 FFEKRVGEYQKAS 220 >gi|193206379|ref|NP_500944.2| hypothetical protein F58F9.1 [Caenorhabditis elegans] Length = 581 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 75/304 (24%), Positives = 131/304 (43%), Gaps = 46/304 (15%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P+ + WE Y A W EV + D++ W+ LT DER I L FFA+S+ + Sbjct: 321 PIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWEI---LTSDERQFISSILAFFAASDGI 377 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREV 152 V N+ + E R + Q E +HS + ++ + D+ E LFN Sbjct: 378 VTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRDDAERNILFNAITTF 437 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 I AKA+W L++ ++P F + L V EG++F + FA I L Sbjct: 438 KFIKAKADWCLRWISDHNAP------------FSERLAAVAAV-EGIFFSSSFAAIFWLK 484 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 + + G+ + I R K + + +++E+ L+E Sbjct: 485 KRGLLPGLTHSNELISR-------------------------KPAESRITEIINESVLVE 519 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + E++P +G+N +Y++F+A+ ++G + T+N F +M E I ++ + Sbjct: 520 QDFVRESLPTNLIGMNQHMMCKYVEFVADLLLEELGYSKRYN-TKNLFDFM-ENISIEGK 577 Query: 333 KNFF 336 NFF Sbjct: 578 TNFF 581 >gi|326782933|ref|YP_004323331.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4] gi|310004192|gb|ADO98586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4] Length = 388 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 84/323 (26%), Positives = 144/323 (44%), Gaps = 37/323 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + +++ LT +++ + NL + +S+ +A + S PE Sbjct: 59 WRPEEVSLQKDRSDYQT---LTPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 115 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-----------NWA 162 + F E +HS ++ YII ++ D E+F+ + ++ ++A N A Sbjct: 116 EACMTVWEFMEMIHSRSYTYIIKNVYPDPSEVFDTILDDENVMSRASSVTKSYDEFINSA 175 Query: 163 LQY----TQTLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRAN 215 ++ T L+ TGT + +E + L+ + EG+ FY FA + G Sbjct: 176 HEFDNCQTWDLARQGHLTGTYER-KELKRKLYRAIANVNILEGIRFYVSFACSFAFGENK 234 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQK-------SRTMLHE 267 M G A+ I RDES HL +++ N K ++ + ++K RT+ E Sbjct: 235 LMEGSAKILSLIARDESQHLVITQNILKNWAKGDDSEMAEIAKEEKPFVVDMFKRTVEEE 294 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWMSE 325 T + +M +GLN Y+++IANRR IGL+P+F NP PW Sbjct: 295 KTWANYLFREGSM----IGLNDRLLHNYVEWIANRRMKAIGLDPVFDQVARNNPLPWTQH 350 Query: 326 VIDLKKEKNF-FETRVTEYQQGA 347 ++ K ++N ET + Y G Sbjct: 351 WLNSKGQQNAPQETEIESYVVGG 373 >gi|326782198|ref|YP_004322599.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1] gi|310004405|gb|ADO98798.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1] Length = 395 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 85/319 (26%), Positives = 139/319 (43%), Gaps = 29/319 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + +K+ LT +++ + NL + +S+ +A + S PE Sbjct: 66 WRPEEVSLQKDRSDYKT---LTPEQKHIYTSNLKYQIMLDSVQGRGPGMAFMPYCSLPEL 122 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169 + E +HS ++ YII ++ D E+F+ + I ++A L Sbjct: 123 ESAMNVWQLMEMIHSRSYTYIIKNVYPDASEVFDTVLDDDKIMSRAESVTAAYDELINAE 182 Query: 170 -----------SSPSFTTGTKDADQEFLQDLF--VFYV-VFEGMWFYTGFAQILSLGRAN 215 ++ GT D +E + L+ V V + EG+ FY FA + G Sbjct: 183 HEFDSGNAWKFAAEGHPAGTYDR-KELKRKLYRAVLNVNILEGIRFYVSFACSFAFGELK 241 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRT--MLHEATLLE 272 M G A+ I RDES HL +I + + ++ + ++KS M A E Sbjct: 242 VMEGSAKIISLIARDESQHLVLTQQIIKKWQDGDDEEMVRIAEEEKSNVLKMFKNAVEEE 301 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWMSEVIDL 329 A+A G +GLN QY++F ANRR IGL+P++ + NP PW ++ Sbjct: 302 KAWASYLFKNGSMIGLNEKLLGQYVEFTANRRMKAIGLDPIYDISPRNNPLPWTQYWLNS 361 Query: 330 KKEKNF-FETRVTEYQQGA 347 K ++N ET + Y G Sbjct: 362 KGQQNAPQETEIESYVIGG 380 >gi|51830370|gb|AAU09736.1| YGR180C [Saccharomyces cerevisiae] Length = 345 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 77/328 (23%), Positives = 136/328 (41%), Gaps = 29/328 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M N+R V + P+KY W Y + W E+ + D ++ LTDD++ I Sbjct: 29 MENSRRFV--MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIG 83 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L SS++LV ++ L NPE + + Q E +HS + ++ + D Sbjct: 84 NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIHSEVYSMMVDAFFKDPK 143 Query: 144 E--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 LF +P + KA + ++ D + V + EG++ Sbjct: 144 NIPLFKEIANLPEVKHKAAFIERWISN-------------DDSLYAERLVAFAAKEGIFQ 190 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 +A + L M G+A + I RD + +F + HL TK + Sbjct: 191 AGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF-------AHLRTKPNPKII 243 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 ++ EA +E Y ++P G++ S Y++F+A+ G E + NPF Sbjct: 244 EKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV-NPFE 302 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +M +V K FFE +V++YQ+ +++ Sbjct: 303 FMEDVATAGK-TTFFEKKVSDYQKASDM 329 >gi|166367085|ref|YP_001659358.1| ribonucleoside-diphosphate reductase beta chain [Microcystis aeruginosa NIES-843] gi|166089458|dbj|BAG04166.1| ribonucleoside-diphosphate reductase beta chain [Microcystis aeruginosa NIES-843] Length = 283 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 78/290 (26%), Positives = 132/290 (45%), Gaps = 26/290 (8%) Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LTD+ER L + +S+ NI + ++ PE + Q +EA+H+ ++QY Sbjct: 7 LTDEERYAYDGILSYLTFLDSVQTCNIP-HLKGSVTAPEISLCMAEQISQEAMHNQSYQY 65 Query: 134 IITSLGLDE--GELFNMYREVPSITAKANW-ALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I ++ E GE+++ +R + + + A Y Q + K + + L Sbjct: 66 LIETIIPSERRGEVYDFWRTDKVLKDRCQFIASLYQQYID--------KQTTESYFIALV 117 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 Y++ E ++FY GF +L M G A+ ++ I RDE H+ +I + Sbjct: 118 ADYLL-ESLYFYNGFIFFYNLASRQLMSGSADVFKMINRDELSHVRLYQKLIPEAMATFS 176 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 H + ++ M A E + + + +G+ S EQY +++AN R IGLE Sbjct: 177 HSVEQIYE-----MFDTAVKHECRWTNHIVGNDILGITEYSTEQYTKYLANIRLKAIGLE 231 Query: 311 PLF---KYTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 PL+ KY ++P+ + D KKE NFFE VT Y + L WD Sbjct: 232 PLYREEKYNKSPYNHLERFSDTKKEGHTKANFFEATVTSYVMSSGLTGWD 281 >gi|190896480|gb|ACE96753.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 213 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 27/237 (11%) Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W++ LT DE+ I L FFA+S+ +V NI + + E R + Q Sbjct: 1 DLGHWEN---LTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57 Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 E +HS + ++ + D E LF+ VP + KA WAL++ D Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI-------------D 104 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 + F + L F V EG++F F I L + M G+ + I RDE LH +F Sbjct: 105 GGESFAERLIAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + + ++ K +++ + ++ EA +E + +++P VG+N QY++ Sbjct: 164 LYSLLR-------KKLGEERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213 >gi|190896432|gb|ACE96729.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896434|gb|ACE96730.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896436|gb|ACE96731.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896438|gb|ACE96732.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896440|gb|ACE96733.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896444|gb|ACE96735.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896446|gb|ACE96736.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896448|gb|ACE96737.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896450|gb|ACE96738.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896452|gb|ACE96739.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896454|gb|ACE96740.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896456|gb|ACE96741.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896458|gb|ACE96742.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896460|gb|ACE96743.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896462|gb|ACE96744.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896464|gb|ACE96745.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896466|gb|ACE96746.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896468|gb|ACE96747.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896470|gb|ACE96748.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896472|gb|ACE96749.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896474|gb|ACE96750.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896476|gb|ACE96751.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896478|gb|ACE96752.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896482|gb|ACE96754.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896484|gb|ACE96755.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896486|gb|ACE96756.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896488|gb|ACE96757.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896492|gb|ACE96759.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896494|gb|ACE96760.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896496|gb|ACE96761.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896498|gb|ACE96762.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896500|gb|ACE96763.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896502|gb|ACE96764.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896504|gb|ACE96765.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896506|gb|ACE96766.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 213 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 27/237 (11%) Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W++ LT DE+ I L FFA+S+ +V NI + + E R + Q Sbjct: 1 DLGHWEN---LTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57 Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 E +HS + ++ + D E LF+ VP + KA WAL++ D Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI-------------D 104 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 + F + L F V EG++F F I L + M G+ + I RDE LH +F Sbjct: 105 GGESFAERLIAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + + ++ K +++ + ++ EA +E + +++P VG+N QY++ Sbjct: 164 LYSLLR-------KKLSEERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213 >gi|48696741|ref|YP_024565.1| ORF20 [Ostreid herpesvirus 1] gi|81986458|sp|Q6R7K3|RIR2_OSHVF RecName: Full=Ribonucleoside-diphosphate reductase small chain gi|41352405|gb|AAS00912.1| ORF20 [Ostreid herpesvirus 1] Length = 579 Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 71/303 (23%), Positives = 142/303 (46%), Gaps = 36/303 (11%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 ++ W TE+ + D+ W+ ++++ER +++ L FFA ++LV + I + Sbjct: 91 SSSWQQTEIDAESDIPTWEQ---ISENERDCVRKVLAFFAVGDTLVKDRIAI-FADEFPL 146 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR--EVPSITAKANWALQY 165 PEC+ ++ Q E VH + + +L D+ +L N Y+ E I K +W Sbjct: 147 PECKDFIDWQTVNEGVHQRVYNNYLDALVKDKIYLADLVNAYKDPEFAPIKKKVDW---L 203 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 + +S + + G ++ V V E + F FA +L RA M + + Sbjct: 204 GKIISVENDSRG----------EMVVGQVCTEAIMFAASFAILLKF-RAPYMRALVLGNE 252 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 +I RDE+LH F +++ ++ + P ++ +L EAT +E+ +A +P+G Sbjct: 253 FIRRDETLHFRFYAELL-RLMPDRPS------DERIAELLTEATEIELEFAEYVVPEGVK 305 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF-----KYTENPFPWMSEVIDLKKEKNFFETRV 340 + Q+++ N+ C + + P++ +P +M+ ++ +++ NFFE + Sbjct: 306 YITKDRLIQHVKANTNQVCEMLDINPIYFDQKGNVLLSPLLYMN-TLESEQKINFFEGKA 364 Query: 341 TEY 343 TEY Sbjct: 365 TEY 367 >gi|190896508|gb|ACE96767.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896514|gb|ACE96770.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896522|gb|ACE96774.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896540|gb|ACE96783.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896542|gb|ACE96784.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E + S + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + + L F V EG++F F I L + M G+ Sbjct: 64 WALRWI-------------DGSESCAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYN-VANPFDGM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|255018022|ref|ZP_05290148.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL F2-515] Length = 267 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/265 (23%), Positives = 123/265 (46%), Gaps = 15/265 (5%) Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143 +G A+ +S + I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 3 IGLLATLDS-PQTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 61 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + R P+I + + ++ + E L + + EG+ FY+ Sbjct: 62 RVFELARTHPTIIKRNEPIMD--------AYDDFMNNKTGETLVKALIQSSILEGINFYS 113 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA +L R NKM G + +I RDE H F +VI I ENP L T+E + + Sbjct: 114 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHE 173 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPW 322 A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W Sbjct: 174 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 232 Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345 + D + + +FFE R + Y++ Sbjct: 233 IKAYADNFTETKTDFFEMRNSSYKK 257 >gi|20809684|gb|AAH28932.1| Similar to ribonucleotide reductase protein r2 class I [Homo sapiens] Length = 172 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 9/155 (5%) Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 9 VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK------- 61 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 HL K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G Sbjct: 62 HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS 121 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +F+ ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 122 KVFR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 154 >gi|257373022|ref|YP_003175796.1| ribonucleotide reductase [Halomicrobium mukohataei DSM 12286] gi|257167746|gb|ACV49438.1| ribonucleotide reductase [Halomicrobium mukohataei DSM 12286] Length = 336 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 77/325 (23%), Positives = 145/325 (44%), Gaps = 18/325 (5%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S+ QL P +Y E + N++W+ TE D+ +K T E+ +IKR + Sbjct: 17 SERTQLKPYEYPDVLEYKDAIRNSYWVHTEFNFSGDVQDFKVNT--TPAEKAVIKRTMLA 74 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 A E V IY + E + A E H + +++ LG+ E F Sbjct: 75 IAQIEVQV-KTFWADIYDEMPKAEVGNVGMTFAESEVRHMDAYSHLLDILGITED--FEE 131 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 +VP+I + ++ +Y + S D QE++ L +F E + ++ F + Sbjct: 132 VTDVPAIEERIDYLDEYLEKSES--------DDTQEYVMSLLLFSTFVEHVSLFSQFLIM 183 Query: 209 LSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 S + K GIA + ++E +H FG++++ I+ ENP L+ ++F+++ + + Sbjct: 184 TSFDKHEKKFKGIANAVEATSKEEQIHGLFGVELVETIREENPDLFDEDFEEEVQAACQQ 243 Query: 268 ATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WM 323 A E+ +G + L + +++ N+ +G+EP+F+ E+ W Sbjct: 244 AFEAEMKILDWIFGEGELEFLPRAHVDAFLRDRFNQSLENVGVEPIFEPDEDLLEETRWF 303 Query: 324 SEVIDLKKEKNFFETRVTEYQQGAE 348 E I + K+ +FF R T Y + A+ Sbjct: 304 DEDIMMTKDNDFFSKRSTTYNKHAQ 328 >gi|190896546|gb|ACE96786.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 26/243 (10%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKAN 160 + + + E R + Q E + S + ++ + D E LF+ VP + KA Sbjct: 4 LMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKAQ 63 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 WAL++ D + + L F V EG++F F I L + M G+ Sbjct: 64 WALRWM-------------DGSESCAERLVAFACV-EGIFFSGSFCAIFWLKKRGLMPGL 109 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE LH +F + + ++ K +++ + ++ +A +E + + + Sbjct: 110 TFSNELISRDEGLHCDFACLLYSLLR-------KKLSEERVKGIVKDAVDIEREFVVDAL 162 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE RV Sbjct: 163 PCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKRV 220 Query: 341 TEY 343 EY Sbjct: 221 GEY 223 >gi|148244629|ref|YP_001219323.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Vesicomyosocius okutanii HA] gi|146326456|dbj|BAF61599.1| ribonucleoside-diphosphate reductase beta subunit [Candidatus Vesicomyosocius okutanii HA] Length = 378 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 75/296 (25%), Positives = 135/296 (45%), Gaps = 24/296 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + L +E+ + NL + +S+ + + +A +S PE Sbjct: 49 WRPEEIDVSKDKIDFAK---LLPNEKHIFISNLQYQILLDSVQSRSPNIAFLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---S 170 ++ +F E +HS ++ +II ++ + G +F+ ++ I +A ++ L + Sbjct: 106 ENWIETWSFSETIHSRSYTHIIRAIVNEPGIVFDDIMKIDEIIQRAESVSKHYNELIKCT 165 Query: 171 SPSFTTGT---KDADQEFLQDLFVF----YV------VFEGMWFYTGFAQILSLGRANKM 217 G K D+E L DL+ Y+ + E + FY FA + M Sbjct: 166 QAYLLHGIGKFKVQDKEILIDLYCLKKQLYLTIMSVNILEAVQFYVSFACSFAFAERKVM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N + ++P + KE +++ TM EA E Sbjct: 226 EGNAKIIRMIARDEALHLTGTQHILNLMSDGKDDPDMKKIAKECEKEVITMFKEACEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +A G +GLNA +QY+++I N R + L P+F NP PW++ +D Sbjct: 286 DWAEYLFRDGSMIGLNAKMLKQYLEYITNVRMKALNLSPVFDECINPLPWINHWLD 341 >gi|326782458|ref|YP_004322858.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2] gi|310003406|gb|ADO97803.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2] Length = 386 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 84/319 (26%), Positives = 138/319 (43%), Gaps = 29/319 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D A + LT ++R + NL + +S+ +A + S PE Sbjct: 57 WRPEEVSLQKDRADYAQ---LTPEQRHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 113 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-----------NWA 162 + F E +HS ++ YII ++ + ++F+ + I ++ N A Sbjct: 114 EACMNVWEFMEMIHSRSYTYIIKNVYSNPEDVFDTILDDEKIIDRSTSVTESYDDFINHA 173 Query: 163 LQYTQ----TLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRAN 215 QY L+ TG D +E + L+ + EG+ FY FA + G Sbjct: 174 HQYDTGTMWELAKDGHYTGQYDR-RELKRKLYRAVANVNILEGIRFYVSFACSFAFGELK 232 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRT--MLHEATLLE 272 M G A+ I RDES HL +++ N ++P + +++ M + E Sbjct: 233 LMEGSAKILSLIARDESQHLVITQNILKNWRDGDDPEMQQIALEEEENVIKMFAKTVDEE 292 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDL 329 A+A G +GLN QY+++IANRR IGL+P++ NP PW ++ Sbjct: 293 KAWAEYLFKDGSMIGLNDRLLSQYVEWIANRRMKAIGLKPMYNVPAKSNPLPWTEHWLNS 352 Query: 330 KKEKNF-FETRVTEYQQGA 347 K ++N ET + Y G Sbjct: 353 KGQQNAPQETEIESYVIGG 371 >gi|190896442|gb|ACE96734.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896490|gb|ACE96758.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 213 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 27/237 (11%) Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W++ LT DE+ I L FF +S+ +V NI + + E R + Q Sbjct: 1 DLGHWEN---LTPDEKHFISHVLAFFVASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57 Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 E +HS + ++ + D E LF+ VP + KA WAL++ D Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI-------------D 104 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 + F + L F V EG++F F I L + M G+ + I RDE LH +F Sbjct: 105 GGESFAERLIAFACV-EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + + ++ K +++ + ++ EA +E + +++P VG+N QY++ Sbjct: 164 LYSLLR-------KKLSEERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213 >gi|269865524|ref|XP_002651954.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063427|gb|EED42101.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 205 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 25/202 (12%) Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 LFN +PSI KA WA ++ S SF T V + EG++F Sbjct: 13 LFNAIENIPSIRKKALWAQKWIA--SDTSFDTRC------------VAFACVEGIFFSGS 58 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 FA I L + M G+ + I RDE LH +F + H + + Sbjct: 59 FAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLL---------HKYINNKCTVIEDI 109 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 + EA +E + E++P +G+N QY++F+A+R +G + ++ + NPF +M Sbjct: 110 VREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM- 167 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 E I L+ + NFFE R YQ+G Sbjct: 168 ENISLQGKTNFFERREANYQKG 189 >gi|269866693|ref|XP_002652360.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220062665|gb|EED41696.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 211 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 28/216 (12%) Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I +L D+ E LFN +PSI KA WA ++ S SF T Sbjct: 5 LIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIA--SDTSFDTRC------------ 50 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 51 VAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLL--------- 101 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 H + ++ EA +E + E++P +G+N QY++F+A+R +G + Sbjct: 102 HKYINNKCTVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEK 161 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 ++ + NPF +M E I L+ + NFFE R YQ+G Sbjct: 162 KIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 195 >gi|6321619|ref|NP_011696.1| Rnr4p [Saccharomyces cerevisiae S288c] gi|1710402|sp|P49723|RIR4_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 2; AltName: Full=Ribonucleotide reductase R2 subunit 2; AltName: Full=Ribonucleotide reductase small subunit 2 gi|15826570|pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer gi|52695527|pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer From Saccharomyces Cerevisiae gi|52695528|pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer From Saccharomyces Cerevisiae gi|915546|gb|AAB72236.1| Rnr4p [Saccharomyces cerevisiae] gi|1323319|emb|CAA97206.1| RNR4 [Saccharomyces cerevisiae] gi|285812375|tpg|DAA08275.1| TPA: Rnr4p [Saccharomyces cerevisiae S288c] gi|323304781|gb|EGA58540.1| Rnr4p [Saccharomyces cerevisiae FostersB] gi|323308943|gb|EGA62174.1| Rnr4p [Saccharomyces cerevisiae FostersO] Length = 345 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 76/328 (23%), Positives = 136/328 (41%), Gaps = 29/328 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M N+R V + P+KY W Y + W E+ + D ++ LTDD++ I Sbjct: 29 MENSRRFV--MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIG 83 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L SS++LV ++ L NPE + + Q E ++S + ++ + D Sbjct: 84 NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPK 143 Query: 144 E--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 LF +P + KA + ++ D + V + EG++ Sbjct: 144 NIPLFKEIANLPEVKHKAAFIERWISN-------------DDSLYAERLVAFAAKEGIFQ 190 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 +A + L M G+A + I RD + +F + HL TK + Sbjct: 191 AGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF-------AHLRTKPNPKII 243 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 ++ EA +E Y ++P G++ S Y++F+A+ G E + NPF Sbjct: 244 EKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV-NPFE 302 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +M +V K FFE +V++YQ+ +++ Sbjct: 303 FMEDVATAGK-TTFFEKKVSDYQKASDM 329 >gi|332031690|gb|EGI71130.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex echinatior] Length = 210 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 22/208 (10%) Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 LFN +P + KANWAL + S+ + V + EG++F Sbjct: 10 LFNAIETLPCVRKKANWALNWINHESAT-------------FPERVVAFAAVEGIFFSGS 56 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 FA I L + M G+ + I RDE LH +F + I ++ P ++ +++ Sbjct: 57 FAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFKHI-VQKPSF------ERVKSI 109 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 + +A +E + + +P +G+N Y++F+A+R +G E ++ +ENPF +M Sbjct: 110 VMDAVEIEKEFLTQALPVELIGMNRTFMCNYIEFVADRLFVALGFEKVYN-SENPFSFM- 167 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352 + I + + NFFE +V EY++ ++ D Sbjct: 168 DFISMMGKTNFFEKKVGEYKKFGVMEED 195 >gi|94499220|ref|ZP_01305758.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp. RED65] gi|94428852|gb|EAT13824.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp. RED65] Length = 376 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D K L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDLSTDR---KDFAALPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-SSP 172 ++ +F E +HS ++ +II ++ D ++F+ IT +A +Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNVISDPSKVFDDIVSNEYITKRAESVTKYYDDLIEGV 165 Query: 173 SFTTGTKDADQEF--------LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217 ++ + D E L+DL V E + FY FA + KM Sbjct: 166 TYYQNLGEGDHEINGETIHVSLRDLKRKLYLTMASVNVLEAIRFYVSFACSFAFAERTKM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQI---KIENPHLW--TKEFQQKSRTMLHEATLLE 272 G A+ + I RDE+LHL G + QI ++P + E +++ + EA E Sbjct: 226 EGNAKIIKLIARDEALHLT-GTQHMMQIWALGKDDPEMGEIANECKKQVIEIFREAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N+R IGL+ +F+ +NP PW++ Sbjct: 285 KDWAEYLFKDGSMIGLNKDILCQYVEYITNQRLGAIGLDNIFETRQNPIPWIN 337 >gi|326781924|ref|YP_004322326.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2] gi|310003114|gb|ADO97512.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2] Length = 397 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 28/301 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D +++ L +++ + NL + +S+ +A + S PE Sbjct: 68 WRPEEVSLQKDRGDYQT---LRPEQKHIYTSNLKYQIMLDSIQGRGPGMAFIPYCSLPEL 124 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 + F E +HS ++ YII ++ D E+F+ + S+TA + ++ Sbjct: 125 EACMEVWGFMEMIHSRSYTYIIKNVYSDPSEVFDKIVTDDRILERASSVTASYDDFIRSA 184 Query: 167 QTLS-----------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 Q SPS KD ++ + + + EG+ FY FA + G Sbjct: 185 QQWGTGNMWQEDFRQSPSSQWEIKDVKRKLYRAV-ANVNILEGIRFYVSFACSFAFGELK 243 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQ-IKIENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ I RDE+ HL +++N+ + ++P + KE ++ + A E Sbjct: 244 LMEGSAKIISLIARDENQHLAITQNILNKWAQGDDPEMKQIMKEEEEWTYKAFDNAVNEE 303 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDL 329 +A G +GLN +QY++++ANRR IGL+P + + NP PW I Sbjct: 304 KRWADYLFKDGSMIGLNDKLLQQYVEWVANRRLKAIGLKPQYDIAASANPLPWTQHWISS 363 Query: 330 K 330 K Sbjct: 364 K 364 >gi|326784150|ref|YP_004324543.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1] gi|310004882|gb|ADO99273.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1] Length = 395 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 131/293 (44%), Gaps = 28/293 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D A ++ L +++ + NL + +S+ +A + S PE Sbjct: 66 WRPEEVSLQKDRADYQQ---LRPEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPEL 122 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 + E VHS ++ +II ++ D +F+ + S+TA + LQ Sbjct: 123 ESAMNIWQTMEMVHSRSYTHIIKNIYPDPSVVFDAIITDEKILERATSVTAAYDEFLQAA 182 Query: 167 QTLS-----------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 SP+ KD ++ + + Y++ EG+ FY FA + G Sbjct: 183 HMYDTGNMWKEDWKDSPTAKWELKDLKRKLYRAVANVYIL-EGIRFYVSFACSFAFGENK 241 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ I RDES H+ +++N+ K ++P + +E ++ M ++ E Sbjct: 242 LMEGNAKIISLIARDESQHMTITQNILNKWKQGDDPDMVEIAQEEEKNVYEMFNKCVEEE 301 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFPW 322 + +A G +GLNA ++Y+++ ANRR IGL+P F + NP PW Sbjct: 302 VIWADYLFRDGSMIGLNAKLLQKYVEWTANRRMKSIGLKPTFDAPLSNNPLPW 354 >gi|68069763|ref|XP_676793.1| ribonucleotide reductase small subunit [Plasmodium berghei strain ANKA] gi|56496646|emb|CAI04349.1| ribonucleotide reductase small subunit, putative [Plasmodium berghei] Length = 158 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 84/151 (55%), Gaps = 9/151 (5%) Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG+ F F I + NK+ G+ + I RDE LH +F + + ++ + P Sbjct: 1 EGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP------ 54 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++ + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G +F ++ Sbjct: 55 -EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HS 112 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +NPF WM ++I L+ + NFFE RV +YQ+ Sbjct: 113 KNPFNWM-DLISLQGKTNFFEKRVADYQKSG 142 >gi|61806080|ref|YP_214440.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2] gi|61374589|gb|AAX44586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2] gi|265525292|gb|ACY76089.1| NrdB [Prochlorococcus phage P-SSM2] Length = 384 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 74/302 (24%), Positives = 129/302 (42%), Gaps = 28/302 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D +++ L +++ + NL + +S+ +A + S PE Sbjct: 53 WRPEEVSLQKDRGDYQT---LRPEQKHIYTSNLKYQIMLDSVQGRAPGMAFLPYCSLPEL 109 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + +F E +HS ++ Y+I ++ D E+F+ I ++A + + + Sbjct: 110 EACMEVWSFMEMIHSRSYTYVIKNVYADPSEVFDKILSDDRILSRAASVTESYDDFINEA 169 Query: 174 FTTGT----KDADQEFLQDLFVFYV---------------VFEGMWFYTGFAQILSLGRA 214 G +D D+ L V + + EG+ FY FA + G Sbjct: 170 QGWGQSNLWRDMDKSLDTSLPVLEMKEVKRKLYRAVTNVNILEGIRFYVSFACSFAFGEL 229 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQ-IKIENPHL--WTKEFQQKSRTMLHEATLL 271 M G A+ I RDE+ HL +++N K ++P + KE +Q + M + Sbjct: 230 KVMEGSAKIISLIARDENQHLAITQNILNNWRKGDDPEMVEIMKEEEQWTYQMFEKCVNE 289 Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWMSEVID 328 E +A G +GLN QY++++ANRR IG++P++ NP PW I Sbjct: 290 EKMWAEYLFKDGSMIGLNDKLLHQYVEWVANRRMRSIGMKPVYDIAAKNNPLPWTEHWIS 349 Query: 329 LK 330 K Sbjct: 350 SK 351 >gi|326783480|ref|YP_004324017.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19] gi|310004983|gb|ADO99373.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19] Length = 388 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 76/318 (23%), Positives = 139/318 (43%), Gaps = 27/318 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + +++ L++ ++ + NL + +S+ +A + S PE Sbjct: 59 WRPEEVSLQKDRSDYQT---LSEQQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 115 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF-------NMYREVPSITAKANWALQYT 166 + F E +HS ++ YII ++ + G++F N+ S+T + +++ Sbjct: 116 EACMTVWEFMEMIHSRSYTYIIKNVYSNPGDVFDTILDDENVMSRASSVTESYDSFIEHA 175 Query: 167 QTLSSPSFTTGTKDADQ-------EFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANK 216 + ++ Q E + L+ + EG+ FY FA + G Sbjct: 176 HQYDGSTMWDLAREGHQGGQWERRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKL 235 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQ-IKIENPH--LWTKEFQQKSRTMLHEATLLEI 273 M G A+ I RDES HL +++ + + ++P L +E Q M E Sbjct: 236 MEGSAKILSLIARDESQHLVITQNILRKWSEGDDPEMKLIAQEEQSYVTEMFKRTVEEEK 295 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLK 330 A+A+ G +GLN Y+++IANRR +G++P++ NP PW ++ K Sbjct: 296 AWANYLFRDGSLIGLNDRLLYNYVEWIANRRMKAVGIKPIYDIPAKNNPLPWTEHWLNSK 355 Query: 331 KEKNF-FETRVTEYQQGA 347 ++N ET + Y G Sbjct: 356 GQQNAPQETEIESYVVGG 373 >gi|221105497|ref|XP_002169241.1| PREDICTED: similar to ribonucleoside-diphosphate reductase small chain [Hydra magnipapillata] Length = 363 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 79/322 (24%), Positives = 140/322 (43%), Gaps = 45/322 (13%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL--MIKRNLGFFASSESL 95 K+ W+ Y + +W E+ +D + L D+ + IKR L FFA ++S+ Sbjct: 57 KHKVIWDLYKKQKDAYWTAEEIDFSND-----RHDFLKVDKNIQHFIKRILAFFAGADSI 111 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE---EAVHSHTFQYIITSLGLD---EGELFNMY 149 V NI + LS ++ + F+ E HS + ++ + D EL N + Sbjct: 112 VNINI----KKKLSKITVKEAEIAYGFQQMMEDTHSEVYADMLIKIITDPVERDELINAF 167 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 + V SI WA ++ + ++ V + +FEG+ F FA I Sbjct: 168 KTVASIKRMIQWAQRWINSKRRIGYSI--------------VVFCIFEGLMFSGAFAGIY 213 Query: 210 SLGRA---NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 L + + M G+ + I +DE +H FG + I ++ F++ M Sbjct: 214 WLKKILGEDIMKGLIQSNNLIAKDEGMHTIFGCVIYTFI------IYRLSFEEICELM-K 266 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP--FPWMS 324 EA + ++ + + +G+N Y++++A+R +G E +F T+ P F +M Sbjct: 267 EAVEICKSFTKDAICVDMIGMNVELMYNYIEYVADRLMVYLGYEKIF-MTKIPDQFQFMD 325 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + L K+ NFFE R TEYQ+ Sbjct: 326 TIGFLNKD-NFFERRATEYQKA 346 >gi|151943458|gb|EDN61769.1| ribonucleotide reductase [Saccharomyces cerevisiae YJM789] gi|190406805|gb|EDV10072.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a] gi|256270921|gb|EEU06048.1| Rnr4p [Saccharomyces cerevisiae JAY291] gi|259146684|emb|CAY79941.1| Rnr4p [Saccharomyces cerevisiae EC1118] gi|323333575|gb|EGA74969.1| Rnr4p [Saccharomyces cerevisiae AWRI796] gi|323348450|gb|EGA82695.1| Rnr4p [Saccharomyces cerevisiae Lalvin QA23] Length = 345 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 75/328 (22%), Positives = 135/328 (41%), Gaps = 29/328 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M N+R V + P+KY W Y + W E+ + D ++ LTDD++ I Sbjct: 29 MENSRRFV--MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIG 83 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L SS++LV ++ L NPE + + Q E ++S + ++ + D Sbjct: 84 NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPK 143 Query: 144 E--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 LF +P + K + ++ D + V + EG++ Sbjct: 144 NIPLFKEIANLPEVKHKTAFIERWISN-------------DDSLYAERLVAFAAKEGIFQ 190 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 +A + L M G+A + I RD + +F + HL TK + Sbjct: 191 AGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF-------AHLRTKPNPKII 243 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 ++ EA +E Y ++P G++ S Y++F+A+ G E + NPF Sbjct: 244 EKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV-NPFE 302 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +M +V K FFE +V++YQ+ +++ Sbjct: 303 FMEDVATAGK-TTFFEKKVSDYQKASDM 329 >gi|323337480|gb|EGA78728.1| Rnr4p [Saccharomyces cerevisiae Vin13] Length = 328 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 75/328 (22%), Positives = 135/328 (41%), Gaps = 29/328 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M N+R V + P+KY W Y + W E+ + D ++ LTDD++ I Sbjct: 12 MENSRRFV--MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIG 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L SS++LV ++ L NPE + + Q E ++S + ++ + D Sbjct: 67 NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPK 126 Query: 144 E--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 LF +P + K + ++ D + V + EG++ Sbjct: 127 NIPLFKEIANLPEVKHKTAFIERWISN-------------DDSLYAERLVAFAAKEGIFQ 173 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 +A + L M G+A + I RD + +F + HL TK + Sbjct: 174 AGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF-------AHLRTKPNPKII 226 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 ++ EA +E Y ++P G++ S Y++F+A+ G E + NPF Sbjct: 227 EKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV-NPFE 285 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +M +V K FFE +V++YQ+ +++ Sbjct: 286 FMEDVATAGK-TTFFEKKVSDYQKASDM 312 >gi|332292139|ref|YP_004430748.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170225|gb|AEE19480.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 425 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 82/350 (23%), Positives = 156/350 (44%), Gaps = 40/350 (11%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 QA +++ N+ +KR+ L P +Y ++ + +++W+ TE D+ +K+ Sbjct: 96 QAQKRKTNIFEKRI--------NLKPYEYPQLYDYVPAIRHSYWIHTEYNFTSDIQDFKT 147 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 + +TD ER IK + + E V IY + PE A E H+ Sbjct: 148 R--ITDVERSAIKNTMLAISQIEVAV-KGFWGDIYHKMPKPEVGAVGATFAESEVRHADA 204 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 + +++ LGL++ F + ++ P + + +QY +T + + ++E+ + + Sbjct: 205 YSHLLEILGLNKE--FKLLKKKPVMMKR----VQYLET----ALKNAKSEDNKEYSESIL 254 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 +F + E + ++ F I++ + M+ GI+ + ++E +H +FGID+I IK EN Sbjct: 255 LFSLFIEHVSLFSQFLIIMAFNKHKNMLKGISNVVEATSKEEQIHGDFGIDIIKIIKAEN 314 Query: 250 PHLWTKEFQQKSRTMLHEATLLE------IAYAHET--MPKGFVGLNAPSCEQYMQFIAN 301 P + E + M EA E I A E +PK V ++++ N Sbjct: 315 PEWFDAEHSATVQEMCKEAFKAESNIVDWIFEAGELDFLPKALVN-------EFIKDRFN 367 Query: 302 RRCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQGAE 348 + IG+EP+F+ E W + I K +FF R Y + A+ Sbjct: 368 KSLTSIGIEPVFEVDETLLKDAEWFDDEIIGTKHGDFFVKRSVNYTKRAQ 417 >gi|326796346|ref|YP_004314166.1| ribonucleoside-diphosphate reductase [Marinomonas mediterranea MMB-1] gi|326547110|gb|ADZ92330.1| Ribonucleoside-diphosphate reductase [Marinomonas mediterranea MMB-1] Length = 377 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D K L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDLSSDR---KDFLNLAEHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ IT +A+ +Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPTVIFDDIIVNEEITKRADSVSRYYDDLIEKV 165 Query: 174 --FTT-----------GTKDADQEFLQD-LFVFYV---VFEGMWFYTGFAQILSLGRANK 216 + T G D + L+ L+V V E + FY FA + Sbjct: 166 NLYNTLGLGVHNVPGKGEVDVSMKALKKALYVTLASVNVLEAIRFYVSFACSFAFAERTL 225 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N + ++P + +E +Q+ + EA E Sbjct: 226 MEGNAKIIKLIARDEALHLTGTQHMLNLMTSGKDDPEMAIIAQECRQEITDIFIEAAQQE 285 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLNA QY+++I+N R +GLEP F+ NP PW++ Sbjct: 286 KEWAKYLFKDGSMIGLNAEILGQYVEYISNVRMQAVGLEPAFETKSNPIPWIN 338 >gi|326783253|ref|YP_004323801.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33] gi|310005200|gb|ADO99589.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33] Length = 296 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 77/271 (28%), Positives = 119/271 (43%), Gaps = 26/271 (9%) Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-- 159 +A + S PE +L F E +HS ++ YII ++ D E+F+ E I +A Sbjct: 12 MAFIPYCSLPELEASMLVWEFMEMIHSRSYTYIIKNVYPDPSEVFDTILEDEKILDRASS 71 Query: 160 ---------NWALQYTQT----LSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYT 203 N A QY + L+ G D +E + L+ + EG+ FYT Sbjct: 72 VTESYDDFINHAHQYDTSTMWELAKDGHYAGQFDR-RELKRKLYRAVANVNILEGIRFYT 130 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHL--WTKEFQQK 260 FA + G M G A+ I RDES HL +++N+ + ++P + KE Q Sbjct: 131 SFACSFAFGENKLMEGSAKILSLIARDESQHLVLTQNILNKWRDGDDPEMDIIAKEEQSW 190 Query: 261 SRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TE 317 +M A E +A G +GLN Y+++IANRR I ++P+F Sbjct: 191 VMSMFQRAVDEEKMWAEYLFKNGSMIGLNERLLHNYVEWIANRRMKAICIKPMFDIPAKN 250 Query: 318 NPFPWMSEVIDLKKEKNFF-ETRVTEYQQGA 347 NP PW ++ K ++N ET + Y G Sbjct: 251 NPLPWTEHWLNSKGQQNAPQETEIESYVIGG 281 >gi|87120532|ref|ZP_01076426.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp. MED121] gi|86164175|gb|EAQ65446.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp. MED121] Length = 377 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D K L E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDLSSDR---KDFQHLEAHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS--- 170 ++ +F E +HS ++ +II ++ + G +F+ E IT +A ++ L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNEPGVVFDDITENTEITKRAESVSKWYDDLILLV 165 Query: 171 ------SPSF--TTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANK 216 P G D + + + L++ V V E + FY FA + Sbjct: 166 GLYNTLGPGIHNVPGKGDVNVNLKALKKALYLTMVSVNVLEAIRFYVSFACSFAFAERTL 225 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N + ++P + KE + ++ + EA E Sbjct: 226 MEGNAKIIKLIARDEALHLTGTQHILNLMASGKDDPEMEDIAKECEDEAYQIFFEAAEQE 285 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLNA QY+++I N R IGL P F+ NP PW++ Sbjct: 286 KEWASYLFKDGSMIGLNAQILGQYVEYITNIRMQAIGLLPTFETKHNPIPWIN 338 >gi|326564074|gb|EGE14316.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 103P14B1] gi|326570555|gb|EGE20595.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis BC8] gi|326573198|gb|EGE23167.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis CO72] Length = 361 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 130/284 (45%), Gaps = 22/284 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + L + E+ + NL + +S+ + + + +S PE Sbjct: 48 WRPEEIDVSKDR---RDFIELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E++H+ ++ +II ++ + E+ + P I +A +Y L S S Sbjct: 105 ETWIETWAFFESIHARSYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLS 164 Query: 174 --FTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 + G + E + L++ + V E + FY FA + M G A+ + I Sbjct: 165 LEYQQGKQVDMYELRKRLYLCIMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKLIA 224 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA-TLLEIAYAHETM------- 280 RDE+LHLN ++ + E+ +++Q ++T E + E AY E Sbjct: 225 RDEALHLNGTQHILTLLVKEH-----EDYQTITQTCKDEIYDIFESAYEQERAWIDYLFK 279 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +GLN QY+Q+I + R IGLEP+F T+NP PW++ Sbjct: 280 DGSMIGLNKEILTQYLQYITDIRMSAIGLEPVFN-TKNPIPWIN 322 >gi|326567429|gb|EGE17544.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis BC1] Length = 361 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 130/284 (45%), Gaps = 22/284 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + L + E+ + NL + +S+ + + + +S PE Sbjct: 48 WRPEEIDVSKDR---RDFIELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E++H+ ++ +II ++ + E+ + P I +A +Y L S S Sbjct: 105 ETWIETWAFFESIHARSYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLS 164 Query: 174 --FTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 + G + E + L++ + V E + FY FA + M G A+ + I Sbjct: 165 LEYQQGKQVDMYELRKRLYLCIMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKLIA 224 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA-TLLEIAYAHETM------- 280 RDE+LHLN ++ + E+ +++Q ++T E + E AY E Sbjct: 225 RDEALHLNGTQHILTLLVKEH-----EDYQTITQTCKDEIYDIFESAYEQERAWIDYLFK 279 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +GLN QY+Q+I + R IGLEP+F T+NP PW++ Sbjct: 280 DGSMIGLNKEILTQYLQYITDIRMSAIGLEPVFN-TKNPIPWIN 322 >gi|76803441|ref|YP_327710.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Natronomonas pharaonis DSM 2160] gi|76559256|emb|CAI50863.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Natronomonas pharaonis DSM 2160] Length = 336 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/325 (22%), Positives = 144/325 (44%), Gaps = 18/325 (5%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S+ QL P +Y + + N++W+ TE D+ +++ T E+ +IKR + Sbjct: 17 SERTQLKPYEYADFLDYKDAIRNSYWVHTEFNFSGDVQDFRTNT--TPAEKTVIKRTMLA 74 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 A E V IY + E + A E H + +++ LG+ E F Sbjct: 75 IAQIEVQV-KTFWADIYDEMPKTEVGNVGMTFAESEVRHMDAYSHLLDILGITED--FEE 131 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 +VP+I + + +Y + S D QE++ + +F E + ++ F + Sbjct: 132 VTDVPAIEDRIEYLDKYLEKSES--------DDKQEYVMSILLFSTFVEHVSLFSQFLIM 183 Query: 209 LSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 +S + K GIA + ++E +H FG++++ I+ ENP L+ ++F+++ + Sbjct: 184 MSFDKYKKKFKGIANAVEATSKEEQIHGLFGVELVETIREENPDLFDEDFEEEVQAACQR 243 Query: 268 ATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WM 323 A E+ +G + L + +++ N+ +G+EP+F+ + W Sbjct: 244 AFEAEMKILDWIFGEGELEFLPRTHVDAFLRDRFNQSLENVGVEPIFEPDDGLLEETRWF 303 Query: 324 SEVIDLKKEKNFFETRVTEYQQGAE 348 E I + K+ +FF R T Y + A+ Sbjct: 304 DEDIMMTKDNDFFSKRSTTYNKHAQ 328 >gi|488081|gb|AAA56996.1| ribonucleoside-diphosphate reductase small subunit [Drosophila melanogaster] Length = 214 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 25/221 (11%) Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168 E R + Q E VHS + +I + D + LFN +P++ KA+WAL + Sbjct: 13 EARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSW--- 69 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 +SS S G + + + EG++F FA I L + M G+ + I Sbjct: 70 ISSKSANFGER----------IIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 119 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 RDE LH +F + + HL + +++ ++ +A +E + + +P +G+N Sbjct: 120 RDEGLHCDFAVLMFQ-------HLVQRPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMN 172 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 QY++F+A+R ++G+ ++ T+NPF +M E+I L Sbjct: 173 CDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISL 211 >gi|330445621|ref|ZP_08309273.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489812|dbj|GAA03770.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 377 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 131/293 (44%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ + +F+ E I +A +Y L + + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIIKRAGDISKYYDALIAAT 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F G AD +E + L++ + E + FY FA + M Sbjct: 166 NDYHRFGEGNHSADGVPFTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E +Q+ + A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHILNLLRTGQDDPEMAEIAVECEQECFDIFKSAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL P ++ T+NP PW++ Sbjct: 286 DWADYLFKDGSMIGLNKQILCQYVEYITNLRMSAVGLRPAYEGATQNPIPWIN 338 >gi|15606660|ref|NP_214040.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5] gi|18202109|sp|O67475|RIR2_AQUAE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit; Contains: RecName: Full=Aae nrdB intein; AltName: Full=Aae RIR2 intein gi|2983879|gb|AAC07431.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5] Length = 696 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 116/220 (52%), Gaps = 17/220 (7%) Query: 29 SDVNQLLPLKYGWAWEKY-LSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 +++ +L +KY WA++ Y L N W+P E+ M +D +++ L+D E+ + L Sbjct: 34 TNIFELNEIKYSWAFDLYKLMGFTNFWIPEEIQMLEDRKQYET--VLSDYEKRAYELVLS 91 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGEL 145 F + +S + ++ R ++ PE + Q F+E+VH++++Q+I+ S+ + E+ Sbjct: 92 FLIALDSFQVD-MLKEFGRMITAPEVEMAITAQEFQESVHAYSYQFILESVVDPVKADEI 150 Query: 146 FNMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 +N +RE + + + Y + + P+ ++ F++ Y++ E ++FY+G Sbjct: 151 YNYWREDERLLERNKVIAELYNEFIRKPN--------EENFIKATIGNYIL-ESLYFYSG 201 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 FA +LGR KM +Q +YI RDE + G +V+ + Sbjct: 202 FAFFYTLGRQGKMRNTVQQIKYINRDELCFIE-GTEVLTK 240 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 5/154 (3%) Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 ++Y G +S+ + N +V + + + H+ ++IN ++ ENP L+T E ++ Sbjct: 546 FYYKGKVYCVSVPKGNIVVRYKDS---VCIAGNCHVTLFRNIINTLRKENPELFTPEIEK 602 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTEN 318 A EI + +G+N E+Y++++ N R QIG +P++ + TEN Sbjct: 603 WIVEYFKYAVNEEIKWGQYVTQNQILGINDVLIERYIKYLGNLRITQIGFDPIYPEVTEN 662 Query: 319 PFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKW 351 P W+ E + K +FF+ + Y + ELKW Sbjct: 663 PLKWIDEFRKINNTKTDFFQAKPQTYSKANELKW 696 >gi|163748931|ref|ZP_02156182.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella benthica KT99] gi|161331307|gb|EDQ02195.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella benthica KT99] Length = 376 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 88/343 (25%), Positives = 145/343 (42%), Gaps = 39/343 (11%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPM 61 NN L P+ G+ VNV AR DV KY +EK + + W P EV + Sbjct: 11 NNACLEPMFMGQS-VNV-------ARYDVQ-----KYE-VFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + + L D E+ + NL + +S+ + +A +S PE ++ + Sbjct: 57 SKDKIDYAA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-----------S 170 F E +HS ++ +II ++ D +F+ + I +A QY L Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIIFDDIVKNEEILKRATDIAQYYDDLILLTQAFHLHGE 173 Query: 171 SPSFTTG-----TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 G T+ ++ L V V E + FY FA + N M G A+ + Sbjct: 174 GTHIVNGKELLVTQRTIKKSLYLCMVSVNVLEAIRFYVSFACSFAFAERNVMEGNAKIIR 233 Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHLN ++ ++ +++P + +E +Q + + +A E +A Sbjct: 234 LIARDEALHLNSTQHILKIMRAGVDDPEMGEIAEECEQLAYDIFVKAAEQEKEWAQYLFK 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 G +GLN QY+++I N R + L P + NP PWM Sbjct: 294 DGSMIGLNEAILCQYVEYITNERMKSVNLTPHYDEITNPLPWM 336 >gi|47213105|emb|CAF89525.1| unnamed protein product [Tetraodon nigroviridis] Length = 198 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 22/193 (11%) Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 P KA+WAL + G + A + V + EG++F FA I L Sbjct: 10 PHRWKKADWALNWI----------GNQKAS---YGERVVAFAAVEGIFFSGSFAAIFWLK 56 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 + M G+ + I RDE LH +F + HL K Q ++ A +E Sbjct: 57 KRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHKPSAQTVGAIIRNAVEIE 109 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + E +P +G+N ++Y++F+A+R ++G +++ ENPF +M E I L+ + Sbjct: 110 QEFLTEALPVKLIGMNCQLMKRYIEFVADRLLLELGFAKIYR-AENPFDFM-ENISLEGK 167 Query: 333 KNFFETRVTEYQQ 345 NFFE RV EYQ+ Sbjct: 168 TNFFEKRVGEYQR 180 >gi|269865568|ref|XP_002651969.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063399|gb|EED42087.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 251 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 93/208 (44%), Gaps = 20/208 (9%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +HS + +I +L D+ E LFN Sbjct: 95 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA WA ++ S SF T V + EG++F FA I Sbjct: 155 NIPSIRKKALWAQKWIA--SDTSFDTRC------------VAFACVEGIFFSGSFAAIFW 200 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFG 238 L + M G+ + I RDE LH +F Sbjct: 201 LKKRGLMPGLTFSNELISRDEGLHTDFA 228 >gi|323304329|gb|EGA58102.1| Rnr2p [Saccharomyces cerevisiae FostersB] Length = 229 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 5/147 (3%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER I Sbjct: 78 LLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERFFIS 135 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + D Sbjct: 136 RVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK 195 Query: 144 E---LFNMYREVPSITAKANWALQYTQ 167 E LFN +P I KA WAL++ Q Sbjct: 196 ESEFLFNAIHTIPEIGEKAEWALRWIQ 222 >gi|255724184|ref|XP_002547021.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404] gi|240134912|gb|EER34466.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404] Length = 252 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 5/137 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+KY W Y A + W EV + DL W N L D+ER + R L FFA+S+ Sbjct: 102 MFPIKYHEIWNFYKKAEASFWTCEEVDLSKDLDDWN--NKLNDNERYFVSRVLAFFAASD 159 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + +PE + + Q E +HS + +I + D E LFN Sbjct: 160 GIVGENLIENFSAEVQSPEAKSFYGFQIMMENIHSEMYSLLIETYVKDPQEADFLFNAIE 219 Query: 151 EVPSITAKANWALQYTQ 167 +P IT KA WA+++ Q Sbjct: 220 NIPCITKKAEWAIKWIQ 236 >gi|118602534|ref|YP_903749.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567473|gb|ABL02278.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 378 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 130/297 (43%), Gaps = 26/297 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L +E+ + NL + +S+ +A +S PE Sbjct: 49 WRPEEIDVSKDKIDF---SKLLPNEKHIFVSNLQYQILLDSVQGRAPNIAFLPIVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA-------LQYT 166 ++ +F E +HS ++ +II ++ + G +F+ + I +A A ++YT Sbjct: 106 ENWIETWSFSETIHSRSYTHIIRAIINEPGVIFDDIMKTDEIIQRAESASKHYDGLIKYT 165 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVF----YV------VFEGMWFYTGFAQILSLGRANK 216 Q T K ++E DL+ Y+ + E + FY FA + Sbjct: 166 QAYLLHG-TGKLKIQEEEVSIDLYCLKKQLYLTIMSVNILEAVRFYVSFACSFAFAERKV 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N + L +KE Q + TM EA E Sbjct: 225 MEGNAKIIKMIARDEALHLTGTQHMLNLMSSGKDDLDMQKISKECQDEVITMFREACEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 +A G +GLNA +QY+++I N R + L +F NP PW++ +D Sbjct: 285 KDWAEYLFRDGSMIGLNAQILKQYLEYITNVRMKALNLSLIFDECTNPLPWINHWLD 341 >gi|113200701|ref|YP_717864.1| ribonucleotide reductase subunit B [Synechococcus phage syn9] gi|76574600|gb|ABA47165.1| ribonucleotide reductase subunit B [Synechococcus phage syn9] Length = 387 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 79/319 (24%), Positives = 138/319 (43%), Gaps = 29/319 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + + LT++++ + NL + +S+ +A + S PE Sbjct: 58 WRPEEVSLQKDRSDYAQ---LTENQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPEL 114 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE-------VPSITAKANWALQYT 166 + F E +HS ++ +II ++ + ++F+ E S+T + +Q+ Sbjct: 115 EACMTVWEFMEMIHSRSYTHIIKNVYPNPSDVFDTILEDERVLERASSVTESYDDFIQHA 174 Query: 167 QT--------LSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRAN 215 Q L+ G D +E + L+ + EG+ FY FA + G Sbjct: 175 QEYGNGTMWELAKEGHVAGQYDR-RELKRKLYRAIANVNILEGIRFYVSFACSFAFGENK 233 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIK-IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ I RDE+ HL +++N+ + ++P + KE + M E Sbjct: 234 LMEGSAKILSLIARDENQHLVITQNILNKWREGDDPEMAIIAKEEEVNVVDMFKRTVNEE 293 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDL 329 +A G +GLN Y+++IANRR IGL+P++ NP PW ++ Sbjct: 294 KRWADYLFKDGSMIGLNDRLLHNYVEWIANRRMKAIGLKPIYDIPAKNNPLPWTEHWLNS 353 Query: 330 KKEKNF-FETRVTEYQQGA 347 K ++N ET + Y G Sbjct: 354 KGQQNAPQETEIESYVVGG 372 >gi|152991848|ref|YP_001357569.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp. NBC37-1] gi|151423709|dbj|BAF71212.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp. NBC37-1] Length = 337 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 82/317 (25%), Positives = 153/317 (48%), Gaps = 26/317 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY W Y N W P+EV + K+ LTD+E+ + K + ++S A Sbjct: 34 KYRWDSNIYDLMNANTWFPSEVNTSTE---KKNFEALTDNEQSIYKMTFAQLSFNDS--A 88 Query: 98 NNIVLAIYRHLSNPECRQYLLR-QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 L+ +R L+N + ++ Q +E HS ++ ++ + G E E+FN+Y+ ++ Sbjct: 89 QEEYLSDFRRLANNRLVKSVISLQIMQEVNHSKSYAVLLDACGNSE-EVFNLYKYDAALN 147 Query: 157 AK-ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K A Q+ + + S AD+ L + V EG++F GF+ I LG + Sbjct: 148 KKNLQVAEQFAKYIDGGS-------ADKMLLSAMAS--VNLEGIYFLLGFSYIYLLG--D 196 Query: 216 KMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 K+ G + ++I RDE + HL ++ I+ EN ++ T + M+ +A +E+ Sbjct: 197 KVPGARDMIKFIARDELNTHLPLFANIFKTIQKEN-NIATSTIDAAYK-MIQDAVKIELE 254 Query: 275 YAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF--PWMSEVIDLKK 331 Y H + + +G+ EQ + AN R +IGL+P+F + + +++ +++ + Sbjct: 255 YGHYLLDQFPIMGVTHELMEQTVYNYANDRLKKIGLDPIFDESATTYLQKLVTKHLEMNE 314 Query: 332 EK-NFFETRVTEYQQGA 347 K NFFE+ V+ Y + + Sbjct: 315 VKSNFFESNVSNYAKSS 331 >gi|221316490|ref|ZP_03598295.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 347 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/304 (24%), Positives = 126/304 (41%), Gaps = 15/304 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P EV M D W ++ + + E+ + +G A +S+ +A Y ++ + Sbjct: 52 WIPDEVSMSKDKVQWATE--MNEMEQELFLNAIGILAVLDSIATYFDNVAAY-YIRDSAI 108 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + + A E +H+ ++ YI++S+ L R K N + L Sbjct: 109 KALMAFVAAMETIHNESYTYILSSVSSKAVSLDVFER------PKKNEFMIRRNKLMMDL 162 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 F ++ E V EG+ F GF R KM G QYI RDE Sbjct: 163 FDEFIQNPTPETFAKGLVAMSGLEGLCFVNGFTPFYHFNRNGKMFGTGTVIQYIQRDEMK 222 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293 H F ++ I + P L T+EF + E LE + E + K ++ + Sbjct: 223 HSYFQTILVRDILTQYPELNTEEFSEFVYDFFTELVQLEREFC-EDLYKNTPDIDIEEVK 281 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMS--EVIDLKKEK-NFFETRVTEYQQGAELK 350 +Y+ + AN +GL+ +F +NP PW++ + +L K +FFE + Y + E K Sbjct: 282 EYIGYRANLILDNLGLDQIFSAKKNPMPWITAFDPDNLNNTKRDFFEDKEVNYGKANEQK 341 Query: 351 --WD 352 WD Sbjct: 342 NDWD 345 >gi|146312444|ref|YP_001177518.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp. 638] gi|145319320|gb|ABP61467.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Enterobacter sp. 638] Length = 376 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDFQA---LPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISHYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T +++ + T + ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHSVNGKTVTVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++P + +E +Q+ + A L E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVLAALQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GLE FK NP PW++ Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYIEYITNIRMQAVGLELPFKTRSNPIPWIN 337 >gi|89092731|ref|ZP_01165684.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum sp. MED92] gi|89083243|gb|EAR62462.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum sp. MED92] Length = 376 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 124/293 (42%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D K + + E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDLSTDR---KDFMNMPEHEKHIFLSNLKYQTLLDSVQGRSPNIAFLPVVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 + AF E +HS ++ +II ++ + E+F+ P I +A+ + Sbjct: 106 ETWFETWAFSETIHSRSYTHIIRNIITEPSEVFDQIVTNPEIIRRADSVTRLYDEFINLS 165 Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 T+ + T ++ ++ L V V E + FY FA + Sbjct: 166 SVHSIHGEGLHTVDGKVYDTSMRNLKKKLYLTL-VSINVLEAIRFYVSFACSFAFAERAI 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N + ++P KE +Q + EA E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNIMASGADDPDYKDIAKECEQDVYNIFKEAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A +G +GLNA Y+++I N R + LE +F +NP PWM+ Sbjct: 285 KDWAQYLFREGSMIGLNAQILSDYVEYITNVRMKALNLEEIFPARQNPLPWMN 337 >gi|152997008|ref|YP_001341843.1| ribonucleotide-diphosphate reductase subunit beta [Marinomonas sp. MWYL1] gi|150837932|gb|ABR71908.1| Ribonucleoside-diphosphate reductase [Marinomonas sp. MWYL1] Length = 377 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D K L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDLSTDR---KDFQRLEEHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ------ 167 ++ +F E +HS ++ +II ++ D ++F+ IT +A+ +Y Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPTKIFDDIVTNEEITKRADSVSKYYDRLIEMV 165 Query: 168 ----TLSSPSFTT---GTKDADQEFLQDLFVFYV----VFEGMWFYTGFAQILSLGRANK 216 T+ +F G+ + L+ + V E + FY FA + Sbjct: 166 NLYNTMGMGTFDVPGRGSIEISMPKLKKALYLTIASVNVLEAIRFYVSFACSFAFAERTL 225 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLWT--KEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N + ++P + E Q + R + EA E Sbjct: 226 MEGNAKIIKLIARDEALHLTGTQHMLNLMASGKDDPEMAVIAAECQDEVRQIFIEAAEQE 285 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLNA QY+++I N R +GLE F NP PW++ Sbjct: 286 KEWATYLFKDGSMIGLNAQILGQYVEYITNVRMQAVGLETCFATKHNPIPWIN 338 >gi|310830452|ref|YP_003965553.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] gi|309249919|gb|ADO59485.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] Length = 342 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 133/290 (45%), Gaps = 19/290 (6%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 ++ Y NHW+P+E+PM D + + L + + KR +G A +S+ V Sbjct: 38 YKLYRVLIGNHWIPSEIPMNVDKSDFPM---LPTNTQNTFKRIIGLLAVLDSM-QTMFVG 93 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKAN 160 + +L++ +E +H+ ++ Y+++SL ++ E+F ++ P I K N Sbjct: 94 DVREYLTDSSLEAVAAIIGQQEVIHNQSYSYVLSSLVSYTEQLEIFEYWKNDP-ILLKRN 152 Query: 161 WALQ--YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 ++ Y SPS T K V +V EG++FY FA +L R KM+ Sbjct: 153 LFIRDAYQAFRESPSPETFFK---------ALVADMVLEGIFFYAAFAFFYNLARDQKML 203 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 ++ YI RDE+ H F ++ Q+ I+ P L T++ + + EA E +A E Sbjct: 204 ATSQMISYIQRDENQHCYFFAELYKQLLIDFPQLNTEQNKTFVYNFMDEAVRHETEWA-E 262 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 + G G++ Y++ IAN R +GL ++ N PW+ D Sbjct: 263 YVLDGIEGIDLDEFRGYIRHIANNRLRLMGLPAAYEGVSNTMPWIRPFSD 312 >gi|86140897|ref|ZP_01059456.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Leeuwenhoekiella blandensis MED217] gi|85832839|gb|EAQ51288.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Leeuwenhoekiella blandensis MED217] Length = 427 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 83/341 (24%), Positives = 148/341 (43%), Gaps = 28/341 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +A E++ N+ +KR+ L P +Y E + +++W+ TE D+ +K+ Sbjct: 98 RALERKTNIFEKRI--------NLKPYEYPELNEYVAAIRHSYWIHTEFNFTSDIQDFKT 149 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFEEAVHSH 129 GL++ ER IK + A S+ VA ++ L PE A E H Sbjct: 150 --GLSEVERSAIKNTM--LAISQIEVAVKTFWGDVHHRLPKPEIAAVGATFAESEVRHHD 205 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 + +++ LGL+E F ++ P I + + Y +T S D D+E+ + + Sbjct: 206 AYSHLLEILGLNEE--FKELKKKPVIMKR----VHYLET----SLKHAKSDDDREYTESI 255 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 +F + E + ++ F I++ + M+ GI+ + ++E +H +FG+D+IN IK E Sbjct: 256 LLFALFIEHVSLFSQFLIIMAFNKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKE 315 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQI 307 NP + +E + M + E KG + L ++++ N+ I Sbjct: 316 NPEWFDEEHNNLIKEMCLNSFEAESKVVDWIFEKGELDFLPKAVINEFLKNRFNKSLEAI 375 Query: 308 GLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 GLE LF E W + I K +FF R Y + Sbjct: 376 GLEKLFDIDEALLQETEWFDDEIIGTKHGDFFVKRSINYSK 416 >gi|170726650|ref|YP_001760676.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella woodyi ATCC 51908] gi|169811997|gb|ACA86581.1| Ribonucleoside-diphosphate reductase [Shewanella woodyi ATCC 51908] Length = 376 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 90/343 (26%), Positives = 148/343 (43%), Gaps = 39/343 (11%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPM 61 N+ L P+ G+ VNV AR DV KY +EK + + W P EV + Sbjct: 11 NDARLEPMFLGQS-VNV-------ARYDVQ-----KYE-VFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + L D E+ + NL + +S+ + +A +S PE ++ + Sbjct: 57 SKDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ E I +A+ +Y TL + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILKRASDIAEYYDTLIKLTQAFHLLGE 173 Query: 177 GTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT D +E + L++ + V E + FY FA + M G A+ + Sbjct: 174 GTHMIDGRELIVTKREIKKALYLCMMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIR 233 Query: 226 YIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHLN +I Q ++P + KE +Q++ + +A E +A Sbjct: 234 LIARDEALHLNSTQHIIKLMQAGKDDPEMGEIAKECEQQAYDIFVKAAEQEKEWARYLFK 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 G +GLN QY+++I N R + L+ + NP PWM Sbjct: 294 DGSMIGLNEQILCQYVEYITNERMKSVNLDLPYAQITNPLPWM 336 >gi|300717619|ref|YP_003742422.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia billingiae Eb661] gi|299063455|emb|CAX60575.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia billingiae Eb661] Length = 376 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 128/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ GL D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQ---GLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN------------- 160 ++ AF E +HS ++ +II ++ D +F+ I ++A Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEQILSRAKDISGYYDDLIEMT 165 Query: 161 --WAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 W L + T ++ S T + A ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHQVNGKSITINLR-ALKKQLYICLMSVNALEAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----E 272 M G A+ + I RDE+LHL ++N ++ E ++SR ++ +L E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLLRSGEDDPEMAEIARESRQECYDLFVLAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R H +GL+ FK NP PW++ Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYIEYITNIRMHAVGLDLPFKTRSNPIPWIN 337 >gi|228926484|ref|ZP_04089556.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833308|gb|EEM78873.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 322 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E E+F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AYA E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYAEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|323650974|ref|YP_004243617.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. natto] gi|323461614|dbj|BAJ77030.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. natto] Length = 347 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/302 (24%), Positives = 125/302 (41%), Gaps = 13/302 (4%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P EV M D W ++ + + E+ + +G A +S+ +A Y ++ + Sbjct: 52 WIPDEVSMSKDKVQWATE--MNEMEQELFLNAIGILAVLDSIATYFDNVAAY-YIRDSAI 108 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + + A E +H+ ++ YI++S+ L R K N + L Sbjct: 109 KALMAFVAAMETIHNESYTYILSSVSSKAVSLDVFER------PKKNEFMIRRNKLMMDL 162 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 F ++ E V EG+ F GF R KM G QYI RDE Sbjct: 163 FDEFIQNPTPETFAKGLVAMSGLEGLCFVNGFTPFYHFNRNGKMFGTGTVIQYIQRDEMK 222 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293 H F ++ I + P L T+EF + E LE + E + K ++ + Sbjct: 223 HSYFQTILVRDILTQYPELNTEEFSEFVYDFFTELVQLEREFC-EDLYKNTPDIDIEEVK 281 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMS--EVIDLKKEK-NFFETRVTEYQQGAELK 350 +Y+ + AN +GL+ +F +NP PW++ + +L K +FFE + Y + E K Sbjct: 282 EYIGYRANLILDNLGLDQIFAAKKNPMPWITAFDPDNLNNTKRDFFEDKEVNYGKANEQK 341 Query: 351 WD 352 D Sbjct: 342 ND 343 >gi|58532963|ref|YP_195186.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2] gi|58331430|emb|CAF34216.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2] Length = 394 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 131/292 (44%), Gaps = 26/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D A ++ L +++ + NL + +S+ +A + S PE Sbjct: 65 WRPEEVSLQKDRADYQQ---LRPEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPEL 121 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 + E VHS ++ +II ++ D ++F+ + S+T + LQ Sbjct: 122 ESAMNIWQTMEMVHSRSYTHIIKNIYPDPSDVFDQIISDEKILERATSVTKAYDEFLQAA 181 Query: 167 QTLSSP-SFTTGTKDAD------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANK 216 Q + S+ ++ D +E + L+ + EG+ FY FA + G Sbjct: 182 QEWGAGNSWEHALEEVDSAKWELKELKRKLYRAVANVYILEGIRFYVSFACSFAFGENKL 241 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRT--MLHEATLLEI 273 M G A+ I RDES H+ ++IN+ K ++P + Q+++ M + EI Sbjct: 242 MEGNAKIISLIARDESQHMTITQNIINKWKAGDDPDMVEIAKQEENNVYDMFKKCVEEEI 301 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPW 322 +A G +GLNA ++Y+++ ANRR IG++ +F + NP PW Sbjct: 302 IWADYLFRDGSMIGLNAKLLQKYVEWTANRRMKAIGMKQIFDVPLSNNPLPW 353 >gi|327394563|dbj|BAK11985.1| ribonucleoside-diphosphate reductase 1 beta subunit NrdB [Pantoea ananatis AJ13355] Length = 376 Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 125/293 (42%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ AF E +HS ++ +II ++ D +F+ I A+A QY Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDLIEMT 165 Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 T ++ S T + A ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHQVNGKSVTVSLR-ALKKQLYICLMSVNALEAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ KE + R + +A L E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLLRTGEDDPEMKEIAAECREECFELFKKAALQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWAEYLFSGGSMIGLNKDILCQYIEYITNIRMQAVGLDLPFETRSNPIPWIN 337 >gi|269102947|ref|ZP_06155644.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162845|gb|EEZ41341.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 377 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 73/295 (24%), Positives = 130/295 (44%), Gaps = 29/295 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRIDY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLD-----------------EGELFNMYREVPSIT 156 ++ +F E +HS ++ +II ++ D G++ Y E+ S T Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVSNEYIIKRAGDISRYYDELISAT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV-VFEGMWFYTGFAQILSLGRAN 215 + + T T+ + T +D ++ L + V E + FY FA + Sbjct: 166 NDYHRLGEGTHTVDGKTITINLRDLKKKLY--LCIMSVNALEAIRFYVSFACSFAFAERE 223 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLL 271 M G A+ + I RDE+LHL ++N ++ ++P + KE + + + A Sbjct: 224 LMEGNAKIIKLIARDEALHLTGTQHILNLLRNGHDDPEMAEIAKESEAECFDIFKRAAEQ 283 Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 E +A G +GLN QY+++I N R + +GLE + T+NP PW++ Sbjct: 284 EKEWAEYLFKDGSMIGLNKDILCQYVEYITNLRMNAVGLEHAYTGATQNPIPWIN 338 >gi|90407600|ref|ZP_01215781.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp. CNPT3] gi|90311303|gb|EAS39407.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp. CNPT3] Length = 424 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 84/354 (23%), Positives = 154/354 (43%), Gaps = 48/354 (13%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + +++ N+ +KR+ L P +Y E + +++W+ TE D+ +K Sbjct: 95 HSKDRKHNIFEKRI--------NLKPYEYPEILEYVDAIRHSYWIHTEFNFTSDIQDFKV 146 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFEEAVHSH 129 + L+ ER +IKR + A S+ V+ IY + PE A E H Sbjct: 147 R--LSHPEREVIKRTM--LAISQIEVSVKTFWGNIYTKMPKPEIGSVGATFAESEVRHHD 202 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 + +++ LGL++ F+ E P I + + + + ++E+ + + Sbjct: 203 AYSHLLEILGLNDE--FSKLEENPDIMTRVRYL--------ESALKHANSEDNKEYSESI 252 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 +F + E + ++ F I+S + M+ GI+ + ++E LH NFGID+I IK E Sbjct: 253 LLFSLFIEHVSLFSQFLIIMSFNKYKNMLKGISNVVEATSKEEQLHGNFGIDLIQIIKQE 312 Query: 249 NPHLWTKEFQQKSRTML-----HEATLLEIAYAH---ETMPKGFVGLNAPSCEQYMQFIA 300 NP + +E+QQ RT+ E+ +++ YA + +PK Q +FI Sbjct: 313 NPSWFNEEYQQSVRTLCLQAFKSESKIIDWIYAEGELDFIPKA----------QVKEFIK 362 Query: 301 NR---RCHQIGLEPLFKYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348 NR I +E +F+ E W + I K +FF R Y + ++ Sbjct: 363 NRFNQSLQSIDIEKVFEIDEKLLEKTEWFDDEIIGTKHGDFFVKRSINYNKRSK 416 >gi|221134587|ref|ZP_03560892.1| ribonucleotide-diphosphate reductase subunit beta [Glaciecola sp. HTCC2999] Length = 376 Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 77/299 (25%), Positives = 132/299 (44%), Gaps = 30/299 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ GL+D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSKDRMDFQ---GLSDAEKHIFISNLKYQTLLDSVQGRSPNIALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +I+ +L D +F E I +A +Y L Sbjct: 106 ETWIETWSFFETIHSRSYTHILRNLFTDPSNIFEDIVENEEIKRRAADISKYYDDLI--- 162 Query: 174 FTT--------GTKDAD--------QEFLQDLFVF---YVVFEGMWFYTGFAQILSLGRA 214 F T GT + + +E + L++ E + FY FA + Sbjct: 163 FATQLWQTQGEGTHEVNGETHIINMRELKKKLYLCMNSVNALEAIRFYVSFACTFAFAER 222 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATL 270 M G ++ + I RDE+LHL V+N ++P + KE +Q++R + A Sbjct: 223 ELMEGNSKIIRLIARDENLHLTSTQHVLNLWAKGKDDPEMAEIAKECEQEARDIFLNAVQ 282 Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 E +A G +GLN Y+++IAN+R IGL F + NP PWM+ ++ Sbjct: 283 QEKEWAAFLFNNGSMIGLNEEILCSYVEYIANQRMAAIGLGQPFDVSSNPLPWMNNYLN 341 >gi|331035505|gb|AEC53062.1| ribonucleotide reductase subunit B [Synechococcus phage S-CRM01] Length = 381 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 82/323 (25%), Positives = 135/323 (41%), Gaps = 37/323 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + +++ L +++ + NL + +S+ LA + S PE Sbjct: 52 WRPEEVSLQKDRSDYQN---LRPEQKHIFTSNLKYQVMLDSVQGRGPSLAFLPYCSLPEL 108 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + F E +HS ++ +II +L E+F+ I +A + T S S Sbjct: 109 ESCMEVWGFMEMIHSRSYTHIIKNLYPQPEEVFSTILSDSKIMERAK-----SVTESYDS 163 Query: 174 FTTGTKDADQ-------------------EFLQDLF--VFYV-VFEGMWFYTGFAQILSL 211 F D E + LF V V + EG+ FY FA + Sbjct: 164 FINAAHHYDNGNGWKFAKEGVPASQAERYELKRKLFRAVMTVNILEGIRFYVSFACSFAF 223 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK---SRTMLHEA 268 G M G A+ I RDE+ HL ++IN + + K + ++ + ++ A Sbjct: 224 GELKVMEGSAKIISLIARDENQHLFLTQNIINNWRNNDDPEMKKIYNEEIDHTTSLFEAA 283 Query: 269 TLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSE 325 E A+A G +GL+ Y+++IANRR IG++P+++ NP PWM Sbjct: 284 VDQEKAWAQYLFKTGSMIGLSEKLLCNYVEWIANRRMKAIGIKPIYEIPANSNPLPWMDH 343 Query: 326 VIDLKKEKNFF-ETRVTEYQQGA 347 + K +N ET + Y G Sbjct: 344 WLKSKGVQNAPQETEIESYIVGG 366 >gi|319957101|ref|YP_004168364.1| ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM 16511] gi|319419505|gb|ADV46615.1| Ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM 16511] Length = 337 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 85/321 (26%), Positives = 151/321 (47%), Gaps = 34/321 (10%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y W+ Y N W P+EV ++ K + LTD+E+ + K + ++S A Sbjct: 34 RYKWSVNLYDLMNANTWFPSEVNTANE---KKHFDLLTDNEQAIYKLTFAQLSFNDS--A 88 Query: 98 NNIVLAIYRHLSNPE-CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 L+ +R L+N + L Q +E HS ++ ++ + G + E+F++Y+ ++ Sbjct: 89 QEEYLSDFRRLANNRLVKAALSLQIMQEVNHSKSYAVLLDAAG-NSDEVFDLYKHDAALN 147 Query: 157 AK-ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K A Q+ + + S A++ L + V EG++F GF+ I LG + Sbjct: 148 RKNQRIANQFARYIDGNS-------AEEMLLSAMAS--VNLEGIYFLLGFSYIYVLG--D 196 Query: 216 KMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 K+ G + ++I RDE + HL ++ I EN K+ M+ EA +E+ Sbjct: 197 KVPGARDMIKFIARDEINTHLPLFANIFKTIYKENK--IPASIVDKAYEMIQEAVDIELE 254 Query: 275 YAH---ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID--L 329 Y E P +GL E+ + AN R ++IGLEP+F+ E P ++ ++++ L Sbjct: 255 YGKYLLENYP--IMGLTDELMEKTVYNYANDRLNKIGLEPIFE--ETPQTYLQKLVEKHL 310 Query: 330 KK---EKNFFETRVTEYQQGA 347 K NFFE+ V Y + + Sbjct: 311 KMNDVRSNFFESNVANYAKNS 331 >gi|291618170|ref|YP_003520912.1| NrdB [Pantoea ananatis LMG 20103] gi|291153200|gb|ADD77784.1| NrdB [Pantoea ananatis LMG 20103] Length = 387 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 124/293 (42%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 60 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 116 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ AF E +HS ++ +II ++ D +F+ I A+A QY Sbjct: 117 ETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDLIEMT 176 Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 T ++ S T + ++ L + E + FY FA + Sbjct: 177 SYWHLLGEGTHQVNGKSVTVSLRALKKQLYICLMSVNAL-EAIRFYVSFACSFAFAEREL 235 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ KE + R + +A L E Sbjct: 236 MEGNAKIIKLIARDEALHLTGTQHMLNLLRTGEDDPEMKEIAAECREECFELFKKAALQE 295 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 296 KEWAEYLFSGGSMIGLNKDILCQYIEYITNIRMQAVGLDLPFETRSNPIPWIN 348 >gi|157955336|gb|ABW06046.1| NrdF [Bacillus thuringiensis serovar kurstaki] Length = 322 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 126/293 (43%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E + +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELSEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|91775577|ref|YP_545333.1| ribonucleotide-diphosphate reductase subunit beta [Methylobacillus flagellatus KT] gi|91709564|gb|ABE49492.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Methylobacillus flagellatus KT] Length = 377 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 127/293 (43%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ GL + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYQ---GLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-----------WA 162 ++ AF E +HS ++ +II ++ D +F+ +I A+A+ + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVSDPALIFDDIVRNENIVARASDISAYYDDLIHYT 165 Query: 163 LQYTQTLSSPSFTTG-TKDADQEFLQDLFVFYV----VFEGMWFYTGFAQILSLGRANKM 217 + Y+Q G TK + L+ L + + E + FY FA + M Sbjct: 166 MLYSQLGKGDHVINGETKTVNLRELKKLLYLCLMSVNILEAIRFYVSFACSFAFAERKVM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P E Q + M A E Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHMLNIMRSGQDDPEFAGIASELQDECFEMFKRAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMS 324 +A G +GLN QY+++I N R +GL F + NP PW++ Sbjct: 286 KWADYLFKDGSMIGLNRDILCQYVEYITNNRMASVGLSAAFPNAKNNPIPWIN 338 >gi|52143985|ref|YP_082843.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus E33L] gi|228984529|ref|ZP_04144706.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229155020|ref|ZP_04283134.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 4342] gi|51977454|gb|AAU19004.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus E33L] gi|157955324|gb|ABW06037.1| NrdF [Bacillus thuringiensis serovar tochigiensis] gi|228628578|gb|EEK85291.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 4342] gi|228775232|gb|EEM23621.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 322 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E E+F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|309379219|emb|CBX22176.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 384 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 136/293 (46%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L G K + +E + L++ + V E + FY FA + M Sbjct: 173 QYYNLLGEGMHNVGGKLVNVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +++P + +E Q++ + +A E Sbjct: 233 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAEELQEECFKLFKKAAEQEK 292 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 293 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345 >gi|313607545|gb|EFR83848.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes FSL F2-208] Length = 187 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 4/154 (2%) Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG+ FY+GFA +L R NKM G + +I RDE H F +VI I ENP L T Sbjct: 25 ILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQT 84 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF- 313 +E + + A LE ++ E + +G G++ Y+++ AN+ +G+ L+ Sbjct: 85 EELVEYTHEAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYP 143 Query: 314 KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 +++N W+ D + + +FFE R + Y++ Sbjct: 144 GHSDNTMTWIKAYADNFTETKTDFFEMRNSSYKK 177 >gi|228990454|ref|ZP_04150419.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus pseudomycoides DSM 12442] gi|228996556|ref|ZP_04156195.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock3-17] gi|229004206|ref|ZP_04162007.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock1-4] gi|228757067|gb|EEM06311.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock1-4] gi|228763188|gb|EEM12096.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock3-17] gi|228768980|gb|EEM17578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus pseudomycoides DSM 12442] Length = 322 Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E+++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIVYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E E+F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFEWVDSHPLLEKKAGIITGYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAEFSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPRFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|120598753|ref|YP_963327.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. W3-18-1] gi|146293170|ref|YP_001183594.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella putrefaciens CN-32] gi|120558846|gb|ABM24773.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. W3-18-1] gi|145564860|gb|ABP75795.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella putrefaciens CN-32] gi|319426318|gb|ADV54392.1| ribonucleotide reductase [Shewanella putrefaciens 200] Length = 376 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 128/293 (43%), Gaps = 28/293 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDKIDY---NDLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + R I + ++ T Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILRRATDIAEYYDHLIKLT 165 Query: 167 QTLSSPSFTTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRAN 215 Q + F GT D E L + L++ + E + FY FA + Sbjct: 166 QVFNL--FGAGTHLIDGEELVVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERK 223 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLW--TKEFQQKSRTMLHEATLL 271 M G A+ + I RDE+LHLN ++N Q ++P + + QQ++ + +A Sbjct: 224 LMEGNAKIIRLIARDEALHLNSTQHILNIMQGGKDDPEMGEIAAQCQQEAYDLFLKAAEQ 283 Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 E +A G +GLN QY++FI N+R + L + + NP PWM Sbjct: 284 EKEWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYPESTNPLPWM 336 >gi|30261453|ref|NP_843830.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Ames] gi|47526645|ref|YP_017994.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. 'Ames Ancestor'] gi|49184287|ref|YP_027539.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Sterne] gi|49477196|ref|YP_035577.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65318723|ref|ZP_00391682.1| COG0208: Ribonucleotide reductase, beta subunit [Bacillus anthracis str. A2012] gi|118476922|ref|YP_894073.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis str. Al Hakam] gi|165870361|ref|ZP_02215016.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0488] gi|167634337|ref|ZP_02392658.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0442] gi|167639338|ref|ZP_02397610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0193] gi|170686782|ref|ZP_02878002.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0465] gi|170706310|ref|ZP_02896771.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0389] gi|177651561|ref|ZP_02934350.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0174] gi|190568085|ref|ZP_03020995.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|196035278|ref|ZP_03102683.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus W] gi|196046555|ref|ZP_03113780.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB108] gi|218902561|ref|YP_002450395.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH820] gi|225863317|ref|YP_002748695.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB102] gi|227815798|ref|YP_002815807.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. CDC 684] gi|228914025|ref|ZP_04077647.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228932735|ref|ZP_04095607.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945050|ref|ZP_04107411.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090407|ref|ZP_04221650.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-42] gi|229120993|ref|ZP_04250235.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 95/8201] gi|229183646|ref|ZP_04310869.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BGSC 6E1] gi|229602752|ref|YP_002865867.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0248] gi|254682483|ref|ZP_05146344.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. CNEVA-9066] gi|254726146|ref|ZP_05187928.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. A1055] gi|254733899|ref|ZP_05191613.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Western North America USA6153] gi|254740411|ref|ZP_05198102.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Kruger B] gi|254753802|ref|ZP_05205837.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Vollum] gi|254758897|ref|ZP_05210924.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Australia 94] gi|301052993|ref|YP_003791204.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis CI] gi|30255307|gb|AAP25316.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. Ames] gi|47501793|gb|AAT30469.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49178214|gb|AAT53590.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. Sterne] gi|49328752|gb|AAT59398.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|72414680|emb|CAG28950.1| ribonucleoside-diphosphate reductase class Ib beta chain [Bacillus anthracis] gi|118416147|gb|ABK84566.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bacillus thuringiensis str. Al Hakam] gi|157955314|gb|ABW06029.1| NrdF [Bacillus thuringiensis serovar finitimus] gi|164713856|gb|EDR19378.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0488] gi|167512777|gb|EDR88151.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0193] gi|167530225|gb|EDR92951.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0442] gi|170128844|gb|EDS97710.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0389] gi|170669305|gb|EDT20048.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0465] gi|172082839|gb|EDT67902.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0174] gi|190560819|gb|EDV14794.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|195991955|gb|EDX55918.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus W] gi|196022739|gb|EDX61421.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB108] gi|218537212|gb|ACK89610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH820] gi|225785957|gb|ACO26174.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB102] gi|227004217|gb|ACP13960.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. CDC 684] gi|228599889|gb|EEK57486.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BGSC 6E1] gi|228662653|gb|EEL18251.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 95/8201] gi|228692990|gb|EEL46708.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-42] gi|228814719|gb|EEM60979.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826940|gb|EEM72702.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228845630|gb|EEM90659.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267160|gb|ACQ48797.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0248] gi|300375162|gb|ADK04066.1| ribonucleotide-diphosphate reductase beta subunit [Bacillus cereus biovar anthracis str. CI] gi|324325470|gb|ADY20730.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis serovar finitimus YBT-020] Length = 322 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E E+F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|229189534|ref|ZP_04316550.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 10876] gi|228593979|gb|EEK51782.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 10876] Length = 322 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSAKEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|228907084|ref|ZP_04070948.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 200] gi|157955401|gb|ABW06095.1| NrdF [Bacillus thuringiensis serovar toumanoffi] gi|228852588|gb|EEM97378.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 200] Length = 322 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITGYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|332141553|ref|YP_004427291.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas macleodii str. 'Deep ecotype'] gi|327551575|gb|AEA98293.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas macleodii str. 'Deep ecotype'] Length = 376 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 134/298 (44%), Gaps = 28/298 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ LTD E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRVDFQK---LTDPEKHIFISNLKYQTLLDSVQGRSPNIAFLPIISLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSIT--------AK 158 ++ +F E +HS ++ +I+ +L D E+F + R I+ A Sbjct: 106 ETWVETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVVNDEIKRRAADISKYYDDLIFAT 165 Query: 159 ANWALQY--TQTLSSPSFTTGTKDADQEFLQDLFVFYV-VFEGMWFYTGFAQILSLGRAN 215 W Q T++ ++T + ++ L + V E + FY FA + Sbjct: 166 QLWQTQGEGVHTVNGTAYTINMYELKKKLY--LCMNSVNALEAIRFYVSFACTFAFAERK 223 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLL 271 M G ++ + I RDE+LHL+ ++N ++P + +E ++++R + A Sbjct: 224 LMEGNSKIIRLIARDENLHLSSTQHILNLWAKGKDDPEMAQIAQECKEEARAIFMNAVEQ 283 Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 E +A G +GLN QY+++IAN+R IGL+ F + NP PWM+ ++ Sbjct: 284 EKEWADYLFKTGSMIGLNKEILCQYVEYIANQRMSAIGLDTPFDISSNPLPWMNNYLN 341 >gi|183599610|ref|ZP_02961103.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827] gi|188021860|gb|EDU59900.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827] Length = 378 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + NGL D E+ + NL + +S+ + +A+ +S PE Sbjct: 51 WRPEEVDVSRDRIDY---NGLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 107 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y TL + Sbjct: 108 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTLIEMT 167 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F GT + + + L++ + E + FY FA + M Sbjct: 168 NYYHMFGEGTHTCNGKQITVSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 227 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E + + + +A E Sbjct: 228 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAECEDECYKLFVDAAEQEK 287 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A +G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 288 EWAEYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFEARSNPIPWIN 339 >gi|283786035|ref|YP_003365900.1| ribonucleoside-diphosphate reductase 1 beta chain [Citrobacter rodentium ICC168] gi|282949489|emb|CBG89102.1| ribonucleoside-diphosphate reductase 1 beta chain [Citrobacter rodentium ICC168] Length = 376 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 133/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLDEGTHTVNGKTVTVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A L E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAALQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|294140834|ref|YP_003556812.1| ribonucleoside-diphosphate reductase subunit beta [Shewanella violacea DSS12] gi|293327303|dbj|BAJ02034.1| ribonucleoside-diphosphate reductase, beta subunit [Shewanella violacea DSS12] Length = 376 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 89/343 (25%), Positives = 143/343 (41%), Gaps = 39/343 (11%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPM 61 NN L P+ G+ VNV AR DV KY +EK + + W P EV + Sbjct: 11 NNARLEPMFMGQS-VNV-------ARYDVQ-----KYE-VFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + + L D E+ + NL + +S+ + +A +S PE ++ + Sbjct: 57 SKDKIDYAA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-----------S 170 F E +HS ++ +II ++ D +F+ E I +A QY L Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIIFDDIVENEEILKRATDIAQYYDDLILLTQAFHLHGE 173 Query: 171 SPSFTTG-----TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 G T+ ++ L V V E + FY FA + N M G A+ + Sbjct: 174 GTHIINGKELLVTQRTIKKSLYLCMVSVNVLEAIRFYVSFACSFAFAERNVMEGNAKIIR 233 Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHLN ++ ++ ++P + KE +Q + + +A E +A Sbjct: 234 LIARDEALHLNSTQHILKIMRAGADDPEMGEIAKECEQLAYDIFVKAAEQEKEWAQYLFK 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 G +GLN QY+++I N R + L + NP PWM Sbjct: 294 DGSMIGLNQAILCQYVEYITNERMKSVNLPCHYDEITNPLPWM 336 >gi|212635281|ref|YP_002311806.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella piezotolerans WP3] gi|212556765|gb|ACJ29219.1| Ribonucleoside-diphosphate reductase, beta subunit [Shewanella piezotolerans WP3] Length = 376 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 124/291 (42%), Gaps = 24/291 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + S L E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSKDKIDYAS---LPAHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L S Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILKRATDIAAYYDKLIRLS 165 Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 G+ D E ++ L++ V V E + FY FA + N M Sbjct: 166 QACQLLGEGSHQIDGEVVEVTKREIKKALYLCMVSVNVLEAIRFYVSFACSFAFAERNVM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN ++ + ++P + KE +Q + + +A E Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILKIMHAGKDDPEMAEIAKECEQTAIDIFVKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +A G +GLN QY+++I N R + LE + NP PWM Sbjct: 286 EWAKYLFKDGSMIGLNEQILCQYVEYITNERMKAVNLESPYAEQSNPLPWM 336 >gi|157955376|gb|ABW06076.1| NrdF [Bacillus thuringiensis serovar morrisoni] Length = 322 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYHRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|218233288|ref|YP_002366135.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus B4264] gi|229149653|ref|ZP_04277884.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1550] gi|157955328|gb|ABW06040.1| NrdF [Bacillus thuringiensis serovar entomocidus] gi|157955388|gb|ABW06085.1| NrdF [Bacillus thuringiensis serovar subtoxicus] gi|157955409|gb|ABW06101.1| NrdF [Bacillus cereus] gi|218161245|gb|ACK61237.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus B4264] gi|228633863|gb|EEK90461.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1550] Length = 322 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQDLLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|229057079|ref|ZP_04196471.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH603] gi|228720220|gb|EEL71799.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH603] Length = 322 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 123/293 (41%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIVTSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q +++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFTELSAKEQQEVQTETQELLMELYEIELAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|283832326|ref|ZP_06352067.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter youngae ATCC 29220] gi|291071973|gb|EFE10082.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter youngae ATCC 29220] Length = 376 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 133/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++P + +E +Q+ + +A L E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAALQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|30019505|ref|NP_831136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus ATCC 14579] gi|229043194|ref|ZP_04190917.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH676] gi|229078637|ref|ZP_04211194.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock4-2] gi|229108909|ref|ZP_04238513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-15] gi|229126769|ref|ZP_04255781.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-Cer4] gi|229144056|ref|ZP_04272472.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST24] gi|296502033|ref|YP_003663733.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis BMB171] gi|29895049|gb|AAP08337.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 14579] gi|157955310|gb|ABW06026.1| NrdF [Bacillus thuringiensis serovar canadensis] gi|157955392|gb|ABW06088.1| NrdF [Bacillus thuringiensis serovar thompsoni] gi|157955396|gb|ABW06091.1| NrdF [Bacillus thuringiensis serovar tohokuensis] gi|228639453|gb|EEK95867.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST24] gi|228656709|gb|EEL12535.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-Cer4] gi|228674565|gb|EEL29805.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-15] gi|228704707|gb|EEL57136.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock4-2] gi|228726156|gb|EEL77390.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH676] gi|296323085|gb|ADH06013.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis BMB171] Length = 322 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|193890961|gb|ACF28634.1| ribonucleotide reductase [Amphidinium carterae] Length = 213 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 20/211 (9%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WE Y + W E+ + D W+S LT E+ IK L FFA+S+ +V N+ Sbjct: 6 WEMYKKHEASFWTAEEIDLSKDNVDWES---LTSSEQHFIKHVLAFFAASDGIVLENLAG 62 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYREVPSITAKA 159 + PE R + Q E +HS T+ +I ++ ++ N +P++ KA Sbjct: 63 QFACEIQVPEARAFYGFQIAMENIHSETYSLLIEQYIKEPQEKADILNAIETMPAVAEKA 122 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 WA+Q+ Q +S F + L F V EG+ F F I L + M G Sbjct: 123 KWAVQWMQRENS-------------FTERLVAFAAV-EGILFSGSFCAIYWLKKRGLMPG 168 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 + + I RDE LH +F + +++ P Sbjct: 169 LTFSNELISRDEGLHADFACLIYRKLQNHLP 199 >gi|157955319|gb|ABW06033.1| NrdF [Bacillus thuringiensis serovar pakistani] Length = 322 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSTEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|47566242|ref|ZP_00237270.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9241] gi|47556795|gb|EAL15126.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9241] Length = 322 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 124/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKQEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E E+F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|54309624|ref|YP_130644.1| ribonucleotide-diphosphate reductase subunit beta [Photobacterium profundum SS9] gi|46914062|emb|CAG20842.1| putative ribonucleoside-diphosphate reductase,beta subunit [Photobacterium profundum SS9] Length = 377 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 33/297 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRIDY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ +F E +HS ++ +II ++ D +F+ E I +A +Y Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENEYIIKRAGDISKYYDDLIAAT 165 Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGR 213 T++ + T + E + L+V + E + FY FA + Sbjct: 166 SDYHRLGEGKHTVNGETITVNLR----EIKKKLYVCMMSVNALEAIRFYVSFACSFAFAE 221 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEAT 269 M G A+ + I RDE+LHL ++N + + ++P + +E QQ+ + EA Sbjct: 222 REVMEGNAKIIKLIARDEALHLTGTQHILNLLRGRHDDPEMADIAQECQQECFDLFKEAA 281 Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 E +A G +GLN QY+++I N R +GLE + +NP PW++ Sbjct: 282 EQEKEWAEYLFKDGSMIGLNKEILCQYVEYITNLRMKAVGLEQAYPGANQNPIPWIN 338 >gi|229084444|ref|ZP_04216723.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-44] gi|228698872|gb|EEL51578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-44] Length = 322 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 77/293 (26%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSREEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E E+F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDSHPLLEKKAGIITGYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P A +E + V V E FY+GF L L K+ E I+RDE Sbjct: 143 PQV------AKKELYMAM-VASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTDEIYTS--IGL-VEE 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPRFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|75759355|ref|ZP_00739452.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896385|ref|YP_002444796.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9842] gi|228900033|ref|ZP_04064269.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] gi|228920164|ref|ZP_04083513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228964415|ref|ZP_04125529.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar sotto str. T04001] gi|74493187|gb|EAO56306.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|157955348|gb|ABW06055.1| NrdF [Bacillus thuringiensis serovar alesti] gi|157955356|gb|ABW06061.1| NrdF [Bacillus thuringiensis serovar dakota] gi|157955360|gb|ABW06064.1| NrdF [Bacillus thuringiensis serovar darmstadiensis] gi|157955364|gb|ABW06067.1| NrdF [Bacillus thuringiensis serovar dendrolimus] gi|157955380|gb|ABW06079.1| NrdF [Bacillus thuringiensis serovar ostriniae] gi|218545942|gb|ACK98336.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9842] gi|228795272|gb|EEM42764.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar sotto str. T04001] gi|228839620|gb|EEM84912.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228859647|gb|EEN04071.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] Length = 322 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITGYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|205353394|ref|YP_002227195.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273175|emb|CAR38137.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628485|gb|EGE34828.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 376 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + +D ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNGKTVVVNLRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|90581239|ref|ZP_01237037.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum S14] gi|90437610|gb|EAS62803.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum S14] Length = 377 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ + +F+ E I +A +Y L S + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIIKRAGDISKYYDALISAT 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + G+ A+ E + L++ + E + FY FA + M Sbjct: 166 NDYHRYGEGSHSANGVPFTVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E +Q+ + A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHILNLLRNGHDDPEMAEIAAECEQECFDIFKAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL P + T+NP PW++ Sbjct: 286 EWADYLFKDGSMIGLNKQILCQYVEYITNLRMVAVGLRPAYDGATQNPIPWIN 338 >gi|237732274|ref|ZP_04562755.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp. 30_2] gi|226907813|gb|EEH93731.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp. 30_2] Length = 376 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 133/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDFQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++P + +E +Q+ + +A L E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAALQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|294505968|ref|YP_003570026.1| Ribonucleoside-diphosphate reductase beta subunit [Salinibacter ruber M8] gi|294342296|emb|CBH23074.1| Ribonucleoside-diphosphate reductase beta subunit [Salinibacter ruber M8] Length = 324 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/317 (23%), Positives = 137/317 (43%), Gaps = 18/317 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P +Y E + ++W+ E + D+ ++ TD ER +IK+ + A E Sbjct: 10 LKPYEYPHLLEFKTAIRQSYWVHDEFSFEGDVQDFRV--NCTDAERSVIKKTMLAIAQVE 67 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 V IY L PE + A E H + +++ LGL++ F E+P Sbjct: 68 VAV-KTFWADIYDRLPVPEVGAVGMTFAESEVRHLDAYSHLLELLGLNDA--FERIEEIP 124 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 ++ + + L+S TG++D ++ F + +F + E + ++ F +LS + Sbjct: 125 ALIDRVEY-------LNSALEGTGSRD-ERAFAHSILLFSIFIEHVSLFSQFLIMLSFDK 176 Query: 214 ANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 K G+A + ++E +H FG++++N I+ E+P + F+Q+ R EA E Sbjct: 177 HEKRFKGVANAVEATSKEEQIHGLFGVELMNIIREEHPEWFGPAFEQEVRAACEEAYDAE 236 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVID 328 G + L P + +++ N + ++P+F+ W E I Sbjct: 237 QKVLDWIFADGELDFLPRPVVDAFLRDKFNESLKNVDVDPIFEVDPEHLGETRWFYEEIL 296 Query: 329 LKKEKNFFETRVTEYQQ 345 L K +FF R T Y + Sbjct: 297 LTKGNDFFSKRSTSYSK 313 >gi|227356095|ref|ZP_03840485.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus mirabilis ATCC 29906] gi|227163740|gb|EEI48652.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus mirabilis ATCC 29906] Length = 376 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 128/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + + Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENKEILKRARDISSYYDELINLT 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F GT ++ + L++ + E + FY FA + M Sbjct: 166 NLYHMFGEGTHQIKGKTVEVTLRKLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E +Q+ + EA E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAECEQECYDLFVEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A +G +GLN QY+++I N R +GL+ FK NP PW++ Sbjct: 286 EWAEYLFSEGSMIGLNKEILCQYVEYITNIRMQAVGLKLPFKARSNPIPWIN 337 >gi|163939261|ref|YP_001644145.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus weihenstephanensis KBAB4] gi|229010750|ref|ZP_04167947.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides DSM 2048] gi|229132251|ref|ZP_04261107.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST196] gi|229166287|ref|ZP_04294046.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH621] gi|163861458|gb|ABY42517.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis KBAB4] gi|228617232|gb|EEK74298.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH621] gi|228651189|gb|EEL07168.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST196] gi|228750424|gb|EEM00253.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides DSM 2048] Length = 322 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 123/293 (41%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIVTSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q +++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFTELSAEEQQEVQTETQELLMELYEIELAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|197285594|ref|YP_002151466.1| ribonucleotide-diphosphate reductase subunit beta [Proteus mirabilis HI4320] gi|194683081|emb|CAR43612.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus mirabilis HI4320] Length = 376 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 128/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + + Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILKRARDISSYYDELINLT 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F GT ++ + L++ + E + FY FA + M Sbjct: 166 NLYHMFGEGTHQIKGKTVEVTLRKLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E +Q+ + EA E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAECEQECYDLFVEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A +G +GLN QY+++I N R +GL+ FK NP PW++ Sbjct: 286 EWAEYLFSEGSMIGLNKEILCQYVEYITNIRMQAVGLKLPFKARSNPIPWIN 337 >gi|157955332|gb|ABW06043.1| NrdF [Bacillus thuringiensis serovar galleriae] gi|157955344|gb|ABW06052.1| NrdF [Bacillus thuringiensis serovar tolworthi] Length = 322 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYHRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|145298925|ref|YP_001141766.1| ribonucleotide-diphosphate reductase subunit beta [Aeromonas salmonicida subsp. salmonicida A449] gi|142851697|gb|ABO90018.1| ribonucleoside-diphosphate reductase, beta subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 377 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/294 (23%), Positives = 133/294 (45%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSHDRIDYQA---LPPHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ + G++F+ Y ++ T Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNNPGQVFDDIVTNEQILKRAGSISCFYDDLIEAT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 A N + T +++ T ++ ++ L + E + FY FA + Sbjct: 166 ALYNLHGEGTHSVAGQMRTITLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + + E +Q + EA + E Sbjct: 225 MEGNAKIIKMIARDEALHLTGTQHMLNLMRTGQDDPEMAEISAECEQACFEIFKEAAIQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R + +GL+P F +NP PW++ Sbjct: 285 KEWAEYLFQDGSMIGLNKDILCQYVEYITNLRMNAVGLQPAFAGAKQNPIPWIN 338 >gi|188533366|ref|YP_001907163.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia tasmaniensis Et1/99] gi|188028408|emb|CAO96269.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia tasmaniensis Et1/99] Length = 376 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN------------- 160 ++ AF E +HS ++ +II ++ D +F+ I ++A Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMT 165 Query: 161 --WAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 W L + T ++ + T + A ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHQVNGKTITVNLR-ALKKQLYICLMSVNALEAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++P + KE +Q+ + A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R + +GL+ FK NP PW++ Sbjct: 285 KEWAEYLFSGGSMIGLNKDILCQYIEYITNIRMNAVGLDLPFKTRSNPIPWIN 337 >gi|157955305|gb|ABW06022.1| NrdF [Bacillus thuringiensis serovar aizawai] gi|157955352|gb|ABW06058.1| NrdF [Bacillus thuringiensis serovar colmeri] gi|157955372|gb|ABW06073.1| NrdF [Bacillus thuringiensis serovar indiana] gi|157955405|gb|ABW06098.1| NrdF [Bacillus thuringiensis serovar wuhanensis] Length = 322 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|323145837|gb|ADX32078.1| hypothetical protein [Pseudomonas phage P3_CHA] gi|323146023|gb|ADX32263.1| hypothetical protein [Pseudomonas phage PAK_P3] Length = 344 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/329 (21%), Positives = 129/329 (39%), Gaps = 41/329 (12%) Query: 36 PLKYGWAWEK-YLSACNNHWMPTEVPMQDDLALWKSKNGLT------DDERLMIKRNLGF 88 P Y WA E + A + HW + + DD + S +GL ++ + ++ + L Sbjct: 17 PFVYPWAVEAARVHAIDMHWDVHQADLTDDKQQYFSTSGLGTNQVPHENHKWLLDKTLSM 76 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146 F + V + ++ N E R +L+ A E VH + G +G+ F Sbjct: 77 FTEMDRTVGEGYT-KLLPYIKNNEIRNWLITAASREVVHQRAYALAAEEFGFTDGDWKAF 135 Query: 147 NMYREVPSI-------TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 Y+E+ A+W+ TG EG+ Sbjct: 136 ASYKEMRDKLEVMGENRIDASWSEPLQAACILAQLLTG-------------------EGV 176 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 + F +L++ R K++G + Q+ + DE+ H+ I V+ ++ + Q Sbjct: 177 GLFGAFTVLLNMKRCGKLIGFNDINQWSLADETDHVEKNIRVLKAMRKDLTPEENSILDQ 236 Query: 260 KSRTMLHEATLLEIAY---AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + R ++ + E+ Y A E P+ L +Y+ ++ R + L + Sbjct: 237 EIRYLIEDYREAEVKYLVLAFEKGPQH--DLTFEQTVEYIDYLCRLRLFECELLKEHQVG 294 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ENP PWM +I+ + NFFE +VT+Y Sbjct: 295 ENPLPWMEWMINAARHDNFFEKKVTDYSH 323 >gi|311278798|ref|YP_003941029.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1] gi|308747993|gb|ADO47745.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1] Length = 376 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 129/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ AF E +HS ++ +II ++ D +F+ I +A QY Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISQYYDTLIELT 165 Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 T +++ + T +D ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHSVNGKTITVNLRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|327198239|ref|YP_004306815.1| putative ribonucleotide reductase B subunit [Pseudomonas phage KPP10] gi|297591765|dbj|BAJ09185.1| putative ribonucleotide reductase B subunit [Pseudomonas phage KPP10] Length = 339 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/330 (21%), Positives = 129/330 (39%), Gaps = 41/330 (12%) Query: 36 PLKYGWAWEK-YLSACNNHWMPTEVPMQDDLALWKSKNGLT------DDERLMIKRNLGF 88 P Y WA E + A + HW + + DD + S +GL ++ + ++ + L Sbjct: 12 PFVYPWAVEAARVHAIDMHWDVHQADLTDDKQQYFSTSGLGTNQVPHENHKWLLDKTLSM 71 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146 F + V + ++ N E R +L+ A E VH + G +G+ F Sbjct: 72 FTEMDRTVGEGYT-KLLPYIKNNEIRNWLITAASREVVHQRAYALAAEEFGFTDGDWKAF 130 Query: 147 NMYREVPSI-------TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 Y+E+ A+W+ TG EG+ Sbjct: 131 ASYKEMRDKLEVMGENRIDASWSEPLQAACILAQLLTG-------------------EGV 171 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 + F +L++ R K++G + Q+ + DE+ H+ I V+ ++ + Q Sbjct: 172 GLFGAFTVLLNMKRCGKLIGFNDINQWSLADETDHVEKNIRVLKAMRKDLTPEENAILDQ 231 Query: 260 KSRTMLHEATLLEIAY---AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + R ++ + E+ Y A E P+ L +Y+ ++ R + L + Sbjct: 232 EIRYLIEDYREAEVKYLVLAFEKGPQH--DLTFEQTVEYIDYLCRLRLFECELLKEHQVG 289 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 ENP PWM +I+ + NFFE +VT+Y Sbjct: 290 ENPLPWMEWMINAARHDNFFEKKVTDYSHS 319 >gi|239993885|ref|ZP_04714409.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas macleodii ATCC 27126] Length = 376 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 131/304 (43%), Gaps = 40/304 (13%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ LTD E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRVDFQK---LTDPEKHIFISNLKYQTLLDSVQGRSPNIAFLPIISLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKAN---WAL 163 ++ +F E +HS ++ +I+ +L D E+F + R I+ + +A Sbjct: 106 ETWVETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVVNDEIKRRAADISKYYDDLIFAT 165 Query: 164 QYTQTLSSPSFTT-GTKDADQ--EFLQDLFVF---YVVFEGMWFYTGFAQILSLGRANKM 217 Q QT T G E + L++ E + FY FA + M Sbjct: 166 QLWQTQGEGVHTVNGVAHTINMYELKKKLYLCMNSVNALEAIRFYVSFACTFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK------------EFQQKSRTML 265 G ++ + I RDE+LHL+ ++N LW K E ++++R + Sbjct: 226 EGNSKIIRLIARDENLHLSSTQHILN--------LWAKGKDDPEMAQIAEECKEEARAIF 277 Query: 266 HEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 A E +A G +GLN QY+++IAN+R IGL+ F+ + NP PWM+ Sbjct: 278 MNAVEQEKQWADYLFQNGSMIGLNKEILCQYVEYIANQRMSAIGLDTPFEISSNPLPWMN 337 Query: 325 EVID 328 ++ Sbjct: 338 NYLN 341 >gi|229102053|ref|ZP_04232765.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-28] gi|228681373|gb|EEL35538.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-28] Length = 322 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA +Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITRYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + Q+ E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQLFAELSAEDQQEVQKETQVLLMELYEIEMAYTEEIYTS--IGL-VDD 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|269468252|gb|EEZ79942.1| ribonucleotide-diphosphate reductase subunit beta [uncultured SUP05 cluster bacterium] Length = 319 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/277 (24%), Positives = 128/277 (46%), Gaps = 22/277 (7%) Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L +E+ + NL + +S+ + +A +S PE ++ +F E +HS ++ + Sbjct: 6 LLPNEKHIFISNLQYQILLDSVQGRSPNIAFLPIVSLPELENWIETWSFSETIHSRSYTH 65 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------SSPSFTTGTKDADQ 183 II ++ + G +F+ + I +A ++ L K+AD Sbjct: 66 IIRAIVNEPGVVFDDIMKTDKIIQRAESVSKHYDELIKCTQAYLLHGEGKLQIDGKNADV 125 Query: 184 EFL---QDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 + + L++ + + E + FY FA + M G A+ + I RDE+LHL Sbjct: 126 DLYCLKRQLYLTVMSVNILEAVRFYVSFACSFAFAERKVMEGNAKIIKMIARDEALHLTG 185 Query: 238 GIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292 ++N ++ ++P + KE + + M EA E +A G +GLNA Sbjct: 186 TQHMLNLMRDGKDDPDMEKIAKECENEVIQMFKEACEQEKDWAEYLFRDGSMIGLNADIL 245 Query: 293 EQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVID 328 +QY+++I N R + +GL+P+F ++ NP PW++ +D Sbjct: 246 KQYLEYITNVRMNALGLKPIFDEHVTNPLPWINSWLD 282 >gi|89074073|ref|ZP_01160574.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium sp. SKA34] gi|89050211|gb|EAR55722.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium sp. SKA34] Length = 377 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ + +F+ E I +A +Y L + + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIVKRAGDISKYYDDLITVT 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F G A+ +E + L++ + E + FY FA + M Sbjct: 166 NDYNRFGEGNHSANGIPFTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E +Q + A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHILNLLRNGHDDPEMVEIATECEQDCFDLFKAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL P ++ T+NP PW++ Sbjct: 286 EWADYLFKDGSMIGLNKQILCQYVEYITNLRMVAVGLRPAYEGATQNPIPWIN 338 >gi|168229641|ref|ZP_02654699.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471700|ref|ZP_03077684.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|238913487|ref|ZP_04657324.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194458064|gb|EDX46903.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335835|gb|EDZ22599.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 376 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 133/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++S + ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNSKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|304398198|ref|ZP_07380072.1| ribonucleotide reductase [Pantoea sp. aB] gi|304354064|gb|EFM18437.1| ribonucleotide reductase [Pantoea sp. aB] Length = 376 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 74/292 (25%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I A+A +Y L + Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDLIEMT 165 Query: 174 -----FTTGT-KDADQEFLQDLFVF----YVVF------EGMWFYTGFAQILSLGRANKM 217 GT K D++ + L Y+ E + FY FA + M Sbjct: 166 NYWHQLGEGTHKVNDKQVVVSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ KE + R + +A L E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGEDDPEMKEIAAECREECFELFKKAALQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 286 EWAEYLFSGGSMIGLNKDILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|229095937|ref|ZP_04226913.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-29] gi|229114891|ref|ZP_04244304.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-3] gi|228668583|gb|EEL24012.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-3] gi|228687447|gb|EEL41349.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-29] Length = 322 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA +Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITRYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + Q+ E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQLFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VDD 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|229177859|ref|ZP_04305232.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 172560W] gi|228605650|gb|EEK63098.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 172560W] Length = 322 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGIITGYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|260772919|ref|ZP_05881835.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio metschnikovii CIP 69.14] gi|260612058|gb|EEX37261.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio metschnikovii CIP 69.14] Length = 377 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 128/293 (43%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIINDPAVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165 Query: 174 -----FTTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F G + E + + L++ + E + FY FA + M Sbjct: 166 NDYHRFGEGKHQLNDETINVSLTELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLW--TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN ++ +++ +E +Q+ + EA E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGLDDFTFLQIAEECKQQCFDLFKEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GLEP + K T NP PW++ Sbjct: 286 EWAAYLFKDGSMIGLNRDILCQYVEYITNIRMQAVGLEPAYPKATSNPIPWIN 338 >gi|330829606|ref|YP_004392558.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like protein [Aeromonas veronii B565] gi|328804742|gb|AEB49941.1| Ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Aeromonas veronii B565] Length = 393 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L E+ + NL + +S+ + +A+ +S PE Sbjct: 65 WRPEEVDVSRDRIDYQA---LPPHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 121 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ ++F+ Y ++ T Sbjct: 122 ETWIETWAFSETIHSRSYTHIIRNIVNTPAQVFDDIVTNEQILKRAGSISHFYDDLIEAT 181 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 A N + T T++ T ++ ++ L + E + FY FA + Sbjct: 182 ALYNLHGEGTHTVAGREVTITLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 240 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + E +Q + EA + E Sbjct: 241 MEGNAKIIKMIARDEALHLTGTQHMLNLMRTGQDDPEMAEIAAECEQACFEIFKEAAIQE 300 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMS 324 +A G +GLN QY+++I N R +GL+P F T +NP PW++ Sbjct: 301 KEWAEYLFQDGSMIGLNKDILCQYVEYITNLRMSAVGLQPAFAGTKQNPIPWIN 354 >gi|83814991|ref|YP_444284.1| ribonucleoside-diphosphate reductase, beta subunit [Salinibacter ruber DSM 13855] gi|83756385|gb|ABC44498.1| ribonucleoside-diphosphate reductase, beta subunit [Salinibacter ruber DSM 13855] Length = 324 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/317 (23%), Positives = 137/317 (43%), Gaps = 18/317 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P +Y E + ++W+ E + D+ ++ TD ER +IK+ + A E Sbjct: 10 LKPYEYPHLLEFKTAIRQSYWVHDEFSFEGDVQDFRV--NCTDAERSVIKKTMLAIAQVE 67 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 V IY L PE + A E H + +++ LGL++ F E+P Sbjct: 68 VAV-KTFWADIYDRLPVPEVGAVGMTFAESEVRHLDAYSHLLELLGLNDA--FERIEEIP 124 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 ++ + + L+S TG++D ++ F + +F + E + ++ F +LS + Sbjct: 125 ALIDRVEY-------LNSALEGTGSRD-ERAFAHSILLFSIFIEHVSLFSQFLIMLSFDK 176 Query: 214 ANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 K G+A + ++E +H FG++++N I+ E+P + F+Q+ R EA E Sbjct: 177 HEKRFKGVANAVEATSKEEQIHGLFGVELMNIIREEHPEWFGPAFEQEVRAACEEAYDAE 236 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVID 328 G + L P + +++ N + ++P+F+ W E + Sbjct: 237 QKVLDWIFADGELDFLPRPVVDAFLRDKFNESLKNVDVDPIFEVDPEHLGETRWFYEEVL 296 Query: 329 LKKEKNFFETRVTEYQQ 345 L K +FF R T Y + Sbjct: 297 LTKGNDFFSKRSTSYSK 313 >gi|229160405|ref|ZP_04288403.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus R309803] gi|228623129|gb|EEK79957.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus R309803] Length = 322 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F + P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDKHPLLEKKAGIVTSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + Q+ E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQLFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|257454213|ref|ZP_05619483.1| ribonucleoside-diphosphate reductase, beta subunit [Enhydrobacter aerosaccus SK60] gi|257448386|gb|EEV23359.1| ribonucleoside-diphosphate reductase, beta subunit [Enhydrobacter aerosaccus SK60] Length = 377 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 133/293 (45%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L+ E+ + NL + +S+ + + +S PE Sbjct: 49 WRPEEIDVSKDRLDF---SNLSVHEQHIFLSNLKYQTLLDSIQGRSPNAVLLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D ++F+ + P I +A ++ L S Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNVVNDPSKVFDDIVDNPFILERATGIAKFYDELYQLS 165 Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + G D + ++ L++ V V E + FY FA + M Sbjct: 166 QLYNLYGEGRHVIDGKPVEVNLRLLKTKLYLCLVAINVLEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN +IN Q ++P + ++ QQ++ + +A E Sbjct: 226 EGNAKIIKMIARDEALHLNGTQHMINLMQWGKDDPDMVEIAQDCQQQAIEIFKDAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMS 324 A+A G +GLN QY+++I N R IGL P+F + NP PW++ Sbjct: 286 AWAKYLFKNGSMIGLNENILVQYVEYITNLRMDAIGLPPIFAAIKNNPIPWIN 338 >gi|3891570|pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia Coli gi|3891571|pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia Coli Length = 340 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS +F +II ++ D +F+ Y E+ +T Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336 >gi|149190928|ref|ZP_01869191.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii AK1] gi|148835283|gb|EDL52257.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii AK1] Length = 377 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 126/293 (43%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D G +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165 Query: 174 -----FTTGTKDADQE--------FLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F GT + E + L++ + E + FY FA + M Sbjct: 166 NDYHRFGEGTHNIKGEEVKVNLYDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN ++ +E +Q + EA E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQDCFDLFKEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I+N R +GL+ + + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYISNVRMQAVGLDAAYPEATSNPIPWIN 338 >gi|42780545|ref|NP_977792.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus ATCC 10987] gi|42736465|gb|AAS40400.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus ATCC 10987] Length = 322 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|332993182|gb|AEF03237.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas sp. SN2] Length = 376 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ LTD E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRVDFQK---LTDPEKHIFISNLKYQTLLDSVQGRSPNIAFLPIISLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 ++ +F E +HS ++ +I+ +L D E+F + R I+ + + T Sbjct: 106 ETWVETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVVNDEIKRRAADISKYYDDLIFAT 165 Query: 167 QTLSSPSFTTGTKDADQ------EFLQDLFVF---YVVFEGMWFYTGFAQILSLGRANKM 217 Q + T D E + LF+ E + FY FA + M Sbjct: 166 QLWQTQGEGVHTVDGVPHTINMYELKKKLFLCMNSVNALEAIRFYVSFACTFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273 G ++ + I RDE+LHL+ ++N ++P + ++ ++++R + A E Sbjct: 226 EGNSKIIRLIARDENLHLSSTQHILNLWARSKDDPEMAQIAQDCKEEARAIFMNAVEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN Y+++IAN+R IGL+ F+ + NP PWM+ Sbjct: 286 EWADYLFKTGSMIGLNKEILCSYVEYIANQRMTAIGLDAPFEISSNPLPWMN 337 >gi|228938567|ref|ZP_04101175.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971446|ref|ZP_04132072.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978059|ref|ZP_04138438.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis Bt407] gi|157955340|gb|ABW06049.1| NrdF [Bacillus thuringiensis serovar thuringiensis] gi|157955368|gb|ABW06070.1| NrdF [Bacillus thuringiensis serovar galechiae] gi|157955384|gb|ABW06082.1| NrdF [Bacillus thuringiensis serovar sotto] gi|228781720|gb|EEM29919.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis Bt407] gi|228788313|gb|EEM36266.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821165|gb|EEM67182.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939076|gb|AEA14972.1| ribonucleotide-diphosphate reductase [Bacillus thuringiensis serovar chinensis CT-43] Length = 322 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 124/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGIITGYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|319779630|ref|YP_004130543.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Taylorella equigenitalis MCE9] gi|317109654|gb|ADU92400.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Taylorella equigenitalis MCE9] Length = 377 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 127/293 (43%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + GL D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEIDVSQDRIDYA---GLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ +D +F+ I +A +Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNISVDPSSIFDDIVRNKHILERAQDISKYYDELIELT 165 Query: 174 -----FTTGTKDADQ--------EFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F G + + E + L++ + V E + FY FA + M Sbjct: 166 QFYEMFGEGVHNVNGREIKVSIYELKKRLYLCLMAVNVLEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N + ++P + E + + + A E Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMLNIMSSGADDPEMAHIASELKNQCFELFKSAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMS 324 A+A G +GLN QY+++I N R +GLE F + +NP PW++ Sbjct: 286 AWAEYLFKDGSMIGLNKEILIQYVEYITNIRMSAVGLEEAFPQSKQNPIPWIN 338 >gi|152974880|ref|YP_001374397.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023632|gb|ABS21402.1| Ribonucleoside-diphosphate reductase [Bacillus cytotoxicus NVH 391-98] Length = 322 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 124/294 (42%), Gaps = 19/294 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E+ KR LG ++ + + H+ N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQTTYKRVLGGLTLLDTKQGGEGMPLVLVHIENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E E+F+ + P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDQHPLLEKKAGIITGYYRKLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAP 290 S+H F + QI E ++ Q++++ +L E +E AY E G VG Sbjct: 196 SIHGVFVGLLAQQIFAELSAEEQEDVQKETQDLLMELYEIETAYTEEIYASIGLVG---- 251 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 252 EVNRFVRYNANKGLMNLGLEPRFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|308187586|ref|YP_003931717.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans C9-1] gi|308058096|gb|ADO10268.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans C9-1] Length = 376 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 125/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I A+A +Y L + Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDLIEMT 165 Query: 174 -----FTTGTKDA-DQEFLQDLFVF----YVVF------EGMWFYTGFAQILSLGRANKM 217 GT D++ + L Y+ E + FY FA + M Sbjct: 166 NYWHQLGEGTHQVNDKQVVVSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ KE + R + +A L E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGEDDPEMKEIAAECREECFELFKKAALQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 286 EWAEYLFSGGSMIGLNKDILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|254976540|ref|ZP_05273012.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-66c26] gi|255093925|ref|ZP_05323403.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile CIP 107932] gi|255315677|ref|ZP_05357260.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-76w55] gi|255518338|ref|ZP_05386014.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-97b34] gi|255651455|ref|ZP_05398357.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-37x79] gi|260684515|ref|YP_003215800.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium difficile CD196] gi|260688173|ref|YP_003219307.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium difficile R20291] gi|260210678|emb|CBA65434.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile CD196] gi|260214190|emb|CBE06438.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile R20291] Length = 323 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 129/298 (43%), Gaps = 23/298 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + D+ +W N L++ E+ + K+ LG ++ NN + ++ N + Sbjct: 34 WLPEEISVSKDIKVW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSMMSLTENLQR 90 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL-QYTQTLS 170 + L E +H+ ++ I +L L+ ELF P++ KA+ L QY T Sbjct: 91 KAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLVLAQYENT-- 148 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 +QE L V V E FY+GF L L KMV E I+RD Sbjct: 149 ----------TNQEGLYLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGEIISLILRD 198 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 ESLH + + +I + K ++K ++L+ EI Y + + GL Sbjct: 199 ESLHGKYIGLLAQEIYDSFDKMDKKMLEEKMYSILYSLMENEIEYTNVIYRES--GLEKE 256 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++++ ANR +G E L+ NP ++ + K +FF T+ YQ+G Sbjct: 257 VV-NFLKYNANRALENLGFEKLYTVDAINPIV-LNGLSTETKTHDFFSTKGNGYQKGV 312 >gi|42543295|pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-D84e (D84e Mutant Of The R2 Subunit Of E. Coli Ribonucleotide Reductase) gi|42543296|pdb|1PM2|B Chain B, Crystal Structure Of Manganese Substituted R2-D84e (D84e Mutant Of The R2 Subunit Of E. Coli Ribonucleotide Reductase) Length = 339 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + ES+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336 >gi|229029125|ref|ZP_04185222.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH1271] gi|228732183|gb|EEL83068.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH1271] Length = 322 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 75/293 (25%), Positives = 125/293 (42%), Gaps = 17/293 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITGYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P T ++ L V V E FY+GF L L K+ E I+RDE Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + Q+ E +E Q++++ +L E +E+AY E +GL Sbjct: 196 SIHGVFVGILAQQLFTELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL-VED 252 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 253 VNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKNH-DFFSVKGNGY 304 >gi|157144813|ref|YP_001452132.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter koseri ATCC BAA-895] gi|157082018|gb|ABV11696.1| hypothetical protein CKO_00540 [Citrobacter koseri ATCC BAA-895] Length = 376 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 130/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++S L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDFQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISHYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T ++ + T + ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHNVNGKTVTVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ I++P + +E +Q + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGIDDPEMAEIAEESKQACYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GLE F+ NP PW++ Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLELPFQTRSNPIPWIN 337 >gi|297745764|emb|CBI15820.3| unnamed protein product [Vitis vinifera] Length = 269 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 10/163 (6%) Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F + L F V EG++F F I L + M G+ + I R E LH +F + + Sbjct: 98 FAERLIAFACV-EGIFFSGSFCAIFWLKKKGLMPGLTFSNELISRYEGLHCDFACLLYSL 156 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 ++ + P W QK ++HEA +E + E +P +G+ A Y++F+ +R Sbjct: 157 LQKQLP--W-----QKVHHIVHEAMEIETQFICEALPCALIGMKATLMSHYIKFVVDRLL 209 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +G E + ENPF WM E I L+ NFF+ R+ +YQ+ + Sbjct: 210 VALGYERKYN-VENPFDWM-EFIFLQGNANFFQRRMGDYQKAS 250 >gi|109898789|ref|YP_662044.1| ribonucleotide-diphosphate reductase subunit beta [Pseudoalteromonas atlantica T6c] gi|109701070|gb|ABG40990.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Pseudoalteromonas atlantica T6c] Length = 376 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 74/304 (24%), Positives = 129/304 (42%), Gaps = 40/304 (13%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ L++ E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSKDRVDFQK---LSESEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 + +F E +HS ++ +I+ +L D +F+ E I +A + + YT Sbjct: 106 ETWTETWSFFETIHSRSYTHILRNLFGDPSSIFSDIVENEQIKKRAADISKYYDDLIFYT 165 Query: 167 QTLSSPSFTTGTKDADQEFLQ------DLFVF---YVVFEGMWFYTGFAQILSLGRANKM 217 Q + T T + ++ + LF+ E + FY FA + M Sbjct: 166 QLWQTLGEGTHTINGEEHVVTMRTLKIKLFLCMNSVNALEAIRFYVSFACTFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK------------EFQQKSRTML 265 G ++ + I RDE+LHL ++N LW K E+++++ + Sbjct: 226 EGNSKIIRLISRDENLHLTSTQHILN--------LWAKGKDDPEMAEIALEYKEEATNIF 277 Query: 266 HEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A E +A G +GLN QY++FIAN R IGL+ F NP PWM+ Sbjct: 278 LDAVNQEKEWAEYLFQNGSMIGLNKDILCQYVEFIANHRMSAIGLDQPFDIKNNPLPWMN 337 Query: 325 EVID 328 ++ Sbjct: 338 NYLN 341 >gi|33358114|pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2 Subunit, D84e Mutant gi|33358115|pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2 Subunit, D84e Mutant gi|33358116|pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-D84e Mutant Containing Oxo-Bridged Diferric Cluster gi|33358117|pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-D84e Mutant Containing Oxo-Bridged Diferric Cluster gi|42543285|pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With Ferrous Ions At Neutral Ph gi|42543286|pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With Ferrous Ions At Neutral Ph Length = 375 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + ES+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336 >gi|163803511|ref|ZP_02197381.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4] gi|159172687|gb|EDP57538.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4] Length = 377 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 125/293 (42%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165 Query: 174 -----FTTG--------TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + G K + + + L++ + E + FY FA + M Sbjct: 166 NDYHRYGEGEHLLNGETVKVSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDESLHLN +IN ++ +E +Q+ + EA E Sbjct: 226 EGNAKIIKLIARDESLHLNGTQHMINLLRNGQDDFIFMQIAEEVKQECFDLFKEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL + + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPKAYPEATTNPIPWIN 338 >gi|322832009|ref|YP_004212036.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602] gi|321167210|gb|ADW72909.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602] Length = 376 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDFQA---LPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I +A Y TL + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISGYYDTLIEMT 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 GT + +E + L++ + E + FY FA + M Sbjct: 166 SYYHLLGEGTHQVNGKTVVVNLRELKKKLYICLMSVNALEAVRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +N ++ ++P + E QQ+ + A E Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHALNLLRSGQDDPEMAEIALECQQECHDLFVLAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ FK NP PW++ Sbjct: 286 DWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDAPFKTRSNPIPWIN 337 >gi|319760602|ref|YP_004124540.1| ribonucleoside-diphosphate reductase 1 subunit beta [Candidatus Blochmannia vafer str. BVAF] gi|318039316|gb|ADV33866.1| ribonucleoside-diphosphate reductase 1 subunit beta [Candidatus Blochmannia vafer str. BVAF] Length = 376 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D ++S L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDISKDRIDYQS---LPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLS-- 170 ++ +F E +HS ++ +II ++ +F+ I +A + ++ Y + Sbjct: 106 ETWVETWSFFETIHSRSYTHIIRNIVTHPSSVFDDIVTNKEILKRAKDISIYYDDLIKLT 165 Query: 171 ------SPSFTTGTKDAD----QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 P T K+ E + L++ + V E + FY FA + M Sbjct: 166 NYYHILGPGIHTINKNIVAVNLHELKKKLYLCLISINVLEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDESLHL+ ++N Q ++P + + +Q +S + A E Sbjct: 226 EGNAKIIRFIARDESLHLSATQHILNLMQSGADDPEMAEISLMYQSESYNLFLMAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +AH G +GLN QY+++I N R IGL+ F N PW++ Sbjct: 286 MWAHYLFKDGSMIGLNKEILCQYIEYITNIRMQAIGLKAPFHIKANVIPWIN 337 >gi|225434341|ref|XP_002276454.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 841 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 10/163 (6%) Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F + L F V EG++F F I L + M G+ + I R E LH +F + + Sbjct: 670 FAERLIAFACV-EGIFFSGSFCAIFWLKKKGLMPGLTFSNELISRYEGLHCDFACLLYSL 728 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 ++ + P W QK ++HEA +E + E +P +G+ A Y++F+ +R Sbjct: 729 LQKQLP--W-----QKVHHIVHEAMEIETQFICEALPCALIGMKATLMSHYIKFVVDRLL 781 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +G E + ENPF WM E I L+ NFF+ R+ +YQ+ + Sbjct: 782 VALGYERKYN-VENPFDWM-EFIFLQGNANFFQRRMGDYQKAS 822 >gi|268591162|ref|ZP_06125383.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rettgeri DSM 1131] gi|291313388|gb|EFE53841.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rettgeri DSM 1131] Length = 378 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 129/292 (44%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 51 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 107 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ E I +A + L + Sbjct: 108 ETWVETWAFSETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILKRAKDISGFYDDLIEMT 167 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F GT + ++ + L++ + E + FY FA + M Sbjct: 168 NYYHMFGEGTHTCNGKQVTVSLRQLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 227 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E +Q+ + +A E Sbjct: 228 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAECEQECYDLFVQAAEQEK 287 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A +G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 288 EWADYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFETRSNPIPWIN 339 >gi|269213593|ref|ZP_05982340.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria cinerea ATCC 14685] gi|269146056|gb|EEZ72474.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria cinerea ATCC 14685] Length = 377 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 135/293 (46%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E I A+A + ++YT Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEYIIARAEDIACYYDDLIEYT 165 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L G K + +E + L++ + V E + FY FA + M Sbjct: 166 QYYNLLGEGVHNVGGKLVNVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +++P + +E Q++ + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMLNLMRSGVDDPEMAEIAEELQEECFKLFKKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 286 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPIGFEGANQNPIPWIN 338 >gi|320175005|gb|EFW50120.1| ribonucleotide-diphosphate reductase subunit beta [Shigella dysenteriae CDC 74-1112] Length = 376 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFTSNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEQIQKRAEGISSYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|1941986|pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain gi|1941987|pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Length = 340 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVAFACSFAFAEREL 223 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336 >gi|83754022|pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space Group P6(1)22 Length = 340 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|16765605|ref|NP_461220.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62180851|ref|YP_217268.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613001|ref|YP_001586966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549728|ref|ZP_02343487.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992612|ref|ZP_02573709.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168237293|ref|ZP_02662351.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242393|ref|ZP_02667325.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261709|ref|ZP_02683682.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466025|ref|ZP_02699895.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817991|ref|ZP_02829991.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442577|ref|YP_002041539.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449379|ref|YP_002046332.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194735273|ref|YP_002115349.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247637|ref|YP_002147234.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262505|ref|ZP_03162579.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242288|ref|YP_002216347.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387602|ref|ZP_03214214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929071|ref|ZP_03220214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207857697|ref|YP_002244348.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161593|ref|ZP_03347303.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|224583238|ref|YP_002637036.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|1172945|sp|P37427|RIR2_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta; AltName: Full=Protein B2; AltName: Full=Protein R2; AltName: Full=Ribonucleotide reductase 1 gi|510349|emb|CAA51453.1| nrdB [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420817|gb|AAL21179.1| ribonucleoside-diphosphate reductase 1, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128484|gb|AAX66187.1| ribonucleoside-diphosphate reductase 1, beta subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362365|gb|ABX66133.1| hypothetical protein SPAB_00707 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401240|gb|ACF61462.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407683|gb|ACF67902.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194710775|gb|ACF89996.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631367|gb|EDX49927.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211340|gb|ACH48737.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240760|gb|EDY23380.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289678|gb|EDY29041.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936804|gb|ACH74137.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604700|gb|EDZ03245.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321615|gb|EDZ06814.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325266|gb|EDZ13105.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329222|gb|EDZ15986.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338588|gb|EDZ25352.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344845|gb|EDZ31609.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349363|gb|EDZ35994.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709500|emb|CAR33844.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467765|gb|ACN45595.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247486|emb|CBG25313.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994368|gb|ACY89253.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158836|emb|CBW18349.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913268|dbj|BAJ37242.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086715|emb|CBY96487.1| ribonucleoside diphosphage reductase 1, beta subunit, B2 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223022|gb|EFX48093.1| Ribonucleotide reductase of class Ia aerobic, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617030|gb|EFY13936.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617664|gb|EFY14563.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624706|gb|EFY21535.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630255|gb|EFY27025.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634436|gb|EFY31169.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639146|gb|EFY35838.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640143|gb|EFY36809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645769|gb|EFY42293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651544|gb|EFY47919.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656105|gb|EFY52404.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659457|gb|EFY55704.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665919|gb|EFY62102.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669843|gb|EFY65984.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673828|gb|EFY69925.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678586|gb|EFY74642.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683618|gb|EFY79632.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687694|gb|EFY83664.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715327|gb|EFZ06898.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130608|gb|ADX18038.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323196209|gb|EFZ81366.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198377|gb|EFZ83479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204185|gb|EFZ89196.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208571|gb|EFZ93510.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212337|gb|EFZ97160.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218256|gb|EGA02966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222986|gb|EGA07335.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227421|gb|EGA11586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232251|gb|EGA16354.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235716|gb|EGA19800.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241124|gb|EGA25160.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244866|gb|EGA28868.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248577|gb|EGA32508.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251597|gb|EGA35465.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255474|gb|EGA39237.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263076|gb|EGA46622.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268136|gb|EGA51613.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270771|gb|EGA54209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624097|gb|EGE30442.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332989211|gb|AEF08194.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 376 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|327409820|ref|YP_004347240.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus] gi|326784994|gb|AEA07128.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus] Length = 319 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 68/302 (22%), Positives = 133/302 (44%), Gaps = 24/302 (7%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN- 110 +HW+P EV D W+ L+ +E+ K L FFA + LV N+V + +S+ Sbjct: 27 SHWIPEEVDTSKDAQDWQL---LSKEEKSFAKLILAFFAQFDGLVVENLVRHFQQEVSSF 83 Query: 111 -PECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 E + + QA E +H+ T+ +I L + + SI A+W ++ Sbjct: 84 AKEIEWFYILQAANELIHNETYMNLINVLLPPSKRAKALDAISNYASIRKIADWVEKWM- 142 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +P+ L + + + EG+ F FA + +N++ G+ ++I Sbjct: 143 ---NPAVP----------LPERIIAFAALEGVIFTGAFAAVYYFTISNRLKGLRTANEWI 189 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE+LH F +V+ ++ ++ + Q++ +L A + ++ V + Sbjct: 190 SRDEALHKKFA-EVLYNFLVDELKVFERVSQERCHEILTSAIEAVTDFIKYSLRLDNVNI 248 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +A YM+ + + E ++ EN +M +I L+ + NFFE +T+Y +G Sbjct: 249 DADRMLGYMKRAVDDLATGLKYEKVYN-AENTLDYML-LIGLENKGNFFEGVITDYSKGM 306 Query: 348 EL 349 ++ Sbjct: 307 DM 308 >gi|161502570|ref|YP_001569682.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863917|gb|ABX20540.1| hypothetical protein SARI_00614 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 376 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 133/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 ++ AF E +HS ++ +II ++ D +F+ + + I+A + ++ T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMT 165 Query: 167 ----------QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 T++ + T ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLGVGRHTVNGKTITVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMADIAEECKQECYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|170767354|ref|ZP_02901807.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia albertii TW07627] gi|170123688|gb|EDS92619.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia albertii TW07627] Length = 376 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISRYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|3891582|pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli gi|3891583|pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli Length = 340 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336 >gi|326783875|ref|YP_004324269.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7] gi|310003887|gb|ADO98282.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7] Length = 388 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 74/307 (24%), Positives = 128/307 (41%), Gaps = 40/307 (13%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D + ++S L +++ + NL + +S+ +A + + PE Sbjct: 59 WRPEEVSLQKDRSDYQS---LRPEQKHIFTSNLKYQILLDSVQGRGPGMAFAPYCALPEL 115 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + F E +HS ++ YII ++ + E+F+ + I +AN + T S Sbjct: 116 EGAMNVWQFMEMIHSRSYTYIIKNVYPNPAEVFDTILDDEKILKRAN-----SVTASYDD 170 Query: 174 FTTGTKDADQ-------------------EFLQDLFVFYV---VFEGMWFYTGFAQILSL 211 F ++ Q E + L+ + EG+ FY FA + Sbjct: 171 FINDAQEYGQGRMWEKDWKDSPSSQWTIHELKRKLYRAVANVNILEGIRFYVSFACSFAF 230 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRT----MLH 266 G M G A+ I RDE+ HL +++ N + ++P + K+ + R M Sbjct: 231 GELKLMEGSAKIISLISRDENQHLVLTQNILKNWMNGDDPEM--KQIADEERNNVIGMFR 288 Query: 267 EATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFPWM 323 A E +A G +GLN QY+++IAN+R +G +P++ NP PW Sbjct: 289 NAVEEEKEWAEYLFSGGSMIGLNDKLLNQYVEWIANKRMKALGFDPIYDQPLRNNPLPWT 348 Query: 324 SEVIDLK 330 I K Sbjct: 349 QHWISSK 355 >gi|126700615|ref|YP_001089512.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium difficile 630] gi|255102106|ref|ZP_05331083.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-63q42] gi|255307975|ref|ZP_05352146.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile ATCC 43255] gi|115252052|emb|CAJ69888.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Clostridium difficile] Length = 323 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 79/299 (26%), Positives = 132/299 (44%), Gaps = 25/299 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + D+ +W N L++ E+ + K+ LG ++ NN + ++ N + Sbjct: 34 WLPEEISVSKDIKVW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSMMSLTENLQR 90 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL-QYTQTLS 170 + L E +H+ ++ I +L L+ ELF P++ KA+ L QY T Sbjct: 91 KAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLVLAQYENT-- 148 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 +QE L V V E FY+GF L L KMV E I+RD Sbjct: 149 ----------TNQEGLYLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGEIISLILRD 198 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 ESLH + I ++ Q ++ KE ++K ++L+ EI Y + + GL Sbjct: 199 ESLHGKY-IGLLAQEIYDSFDKMDKEMLEEKMYSILYSLMENEIEYTNVIYRES--GLEK 255 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++++ ANR +G E L+ NP ++ + K +FF T+ YQ+G Sbjct: 256 EVV-NFLKYNANRALENLGFEKLYTVDAINPIV-LNGLSTETKTHDFFSTKGNGYQKGV 312 >gi|17567153|ref|NP_508269.1| hypothetical protein F19G12.2 [Caenorhabditis elegans] gi|10864352|gb|AAG24065.1| Hypothetical protein F19G12.2 [Caenorhabditis elegans] Length = 668 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 25/225 (11%) Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 E +HS + ++ + D+ E LFN I AKA+W L++ ++P Sbjct: 448 ENIHSEMYAKLLEAYIRDDAERNILFNAITTFKFIKAKADWCLRWISDHNAP-------- 499 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 F + L F V EG++F + FA I L + + G+ + I LH N Sbjct: 500 ----FSERLAAFAAV-EGIFFSSSFAAIFWLKKRGLLPGLTHSNELISM-FLLHPNCFFS 553 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 N + P + + +++E+ L+E + E++P +G+N +Y++F+A Sbjct: 554 TFNLQRRRKPA------ESRITEIINESVLVEQDFVRESLPTNLIGMNQHMMCKYVEFVA 607 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 + ++G + T+NPF +M E I ++ + NFFE RV+EYQ+ Sbjct: 608 DLLLEELGYSKRYN-TKNPFDFM-ENISIEGKTNFFEKRVSEYQR 650 >gi|34763895|ref|ZP_00144797.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886329|gb|EAA23602.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 245 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 29/237 (12%) Query: 16 RVNVDDKRM--------LNAR-------SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +V VD K++ LNAR +++ L ++Y WA + Y + N W+P +V Sbjct: 2 KVAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVD 61 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D +++ LT ER L F +S+ NNI I H++ PE L Q Sbjct: 62 LTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQ 117 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 F+EA+HS ++QYII S+ + +++ +R+ + + ++ + Q Sbjct: 118 TFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID------- 170 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 + +D+ F + + Y++ E ++FY GF L NKMVG ++ + I RDE H+ Sbjct: 171 EQSDENFAKVIIANYLL-ESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHV 226 >gi|189403970|ref|ZP_02786340.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|217327202|ref|ZP_03443285.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|301026864|ref|ZP_07190263.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 196-1] gi|301647674|ref|ZP_07247468.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 146-1] gi|189368305|gb|EDU86721.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|217319569|gb|EEC27994.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|260448673|gb|ACX39095.1| Ribonucleoside-diphosphate reductase [Escherichia coli DH1] gi|299879524|gb|EFI87735.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 196-1] gi|301074204|gb|EFK89010.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 146-1] gi|326339582|gb|EGD63393.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. 1125] Length = 393 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 66 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 122 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 123 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 182 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 183 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 241 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 242 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 301 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 302 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 354 >gi|16761204|ref|NP_456821.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141101|ref|NP_804443.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|25285831|pir||AD0791 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503503|emb|CAD07510.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Typhi] gi|29136727|gb|AAO68292.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 376 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEQIQKRAEGISAYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|15802782|ref|NP_288809.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 EDL933] gi|15832372|ref|NP_311145.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. Sakai] gi|16130170|ref|NP_416738.1| ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. MG1655] gi|82544520|ref|YP_408467.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii Sb227] gi|82777644|ref|YP_403993.1| ribonucleotide-diphosphate reductase subunit beta [Shigella dysenteriae Sd197] gi|89109052|ref|AP_002832.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli str. K-12 substr. W3110] gi|157161718|ref|YP_001459036.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli HS] gi|170081853|ref|YP_001731173.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. DH10B] gi|187731010|ref|YP_001881065.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii CDC 3083-94] gi|188495860|ref|ZP_03003130.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 53638] gi|195935609|ref|ZP_03080991.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. EC4024] gi|218548311|ref|YP_002382102.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia fergusonii ATCC 35469] gi|218705765|ref|YP_002413284.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UMN026] gi|238901409|ref|YP_002927205.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli BW2952] gi|254794126|ref|YP_003078963.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. TW14359] gi|256022083|ref|ZP_05435948.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 4_1_40B] gi|261223312|ref|ZP_05937593.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. FRIK2000] gi|261259138|ref|ZP_05951671.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. FRIK966] gi|293405702|ref|ZP_06649694.1| nrdB [Escherichia coli FVEC1412] gi|293410599|ref|ZP_06654175.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|298381383|ref|ZP_06990982.1| nrdB [Escherichia coli FVEC1302] gi|309785072|ref|ZP_07679705.1| ribonucleoside-diphosphate reductase 1, subunit beta [Shigella dysenteriae 1617] gi|312973510|ref|ZP_07787682.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 1827-70] gi|57014104|sp|P69924|RIR2_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta; AltName: Full=Protein B2; AltName: Full=Protein R2; AltName: Full=Ribonucleotide reductase 1 gi|57014105|sp|P69925|RIR2_ECO57 RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta; AltName: Full=Protein B2; AltName: Full=Protein R2; AltName: Full=Ribonucleotide reductase 1 gi|12516573|gb|AAG57364.1|AE005456_1 ribonucleoside diphosphage reductase 1, beta subunit, B2 [Escherichia coli O157:H7 str. EDL933] gi|146967|gb|AAA24224.1| ribonucleoside diphosphate reductase B2 subunit precursor [Escherichia coli] gi|1788567|gb|AAC75295.1| ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. MG1655] gi|1799582|dbj|BAA16054.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli str. K12 substr. W3110] gi|13362587|dbj|BAB36541.1| ribonucleoside-diphosphate reductase 1 beta subunit [Escherichia coli O157:H7 str. Sakai] gi|81241792|gb|ABB62502.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella dysenteriae Sd197] gi|81245931|gb|ABB66639.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella boydii Sb227] gi|157067398|gb|ABV06653.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli HS] gi|169889688|gb|ACB03395.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. DH10B] gi|187428002|gb|ACD07276.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella boydii CDC 3083-94] gi|188491059|gb|EDU66162.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 53638] gi|218355852|emb|CAQ88465.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia fergusonii ATCC 35469] gi|218432862|emb|CAR13756.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli UMN026] gi|238863475|gb|ACR65473.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli BW2952] gi|254593526|gb|ACT72887.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli O157:H7 str. TW14359] gi|284922226|emb|CBG35308.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli 042] gi|291427910|gb|EFF00937.1| nrdB [Escherichia coli FVEC1412] gi|291471067|gb|EFF13551.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|298278825|gb|EFI20339.1| nrdB [Escherichia coli FVEC1302] gi|308927442|gb|EFP72916.1| ribonucleoside-diphosphate reductase 1, subunit beta [Shigella dysenteriae 1617] gi|309702545|emb|CBJ01872.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli ETEC H10407] gi|310332105|gb|EFP99340.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 1827-70] gi|315615496|gb|EFU96128.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 3431] gi|320184866|gb|EFW59654.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri CDC 796-83] gi|320663001|gb|EFX30318.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O55:H7 str. USDA 5905] gi|327252504|gb|EGE64163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli STEC_7v] gi|332094036|gb|EGI99088.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella boydii 3594-74] gi|332344015|gb|AEE57349.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli UMNK88] Length = 376 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|117624429|ref|YP_853342.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli APEC O1] gi|237704711|ref|ZP_04535192.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 3_2_53FAA] gi|115513553|gb|ABJ01628.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli APEC O1] gi|226901077|gb|EEH87336.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 3_2_53FAA] gi|323952030|gb|EGB47904.1| ribonucleotide reductase [Escherichia coli H252] gi|323956004|gb|EGB51757.1| ribonucleotide reductase [Escherichia coli H263] Length = 420 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 93 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 149 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 150 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 209 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 210 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 268 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 269 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 328 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 329 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 381 >gi|312967536|ref|ZP_07781751.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 2362-75] gi|312287733|gb|EFR15638.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 2362-75] Length = 359 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 32 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 88 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 89 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 148 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 149 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 207 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 208 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 267 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 268 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 320 >gi|284799957|ref|ZP_05985309.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria subflava NJ9703] gi|284796454|gb|EFC51801.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria subflava NJ9703] Length = 377 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + I A+A + ++YT Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYT 165 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L S G K +E + L++ + V E + FY FA + M Sbjct: 166 QYYNLLGEGSHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E Q + + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIANELQDECFNLFKKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ T+NP PW++ Sbjct: 286 EWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 338 >gi|300897697|ref|ZP_07116095.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 198-1] gi|301022393|ref|ZP_07186277.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 69-1] gi|331683911|ref|ZP_08384507.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H299] gi|300358575|gb|EFJ74445.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 198-1] gi|300397543|gb|EFJ81081.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 69-1] gi|323967677|gb|EGB63089.1| ribonucleotide reductase [Escherichia coli M863] gi|331078863|gb|EGI50065.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H299] Length = 393 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 66 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 122 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 123 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 182 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 183 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 241 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 242 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 301 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 302 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 354 >gi|1942079|pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain gi|1942080|pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain gi|15825694|pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli Oxidized By Nitric Oxide gi|15825695|pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli Oxidized By Nitric Oxide gi|15826771|pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli Oxidized By Hydrogen Peroxide And Hydroxylamine gi|15826772|pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli Oxidized By Hydrogen Peroxide And Hydroxylamine gi|29726528|pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2 From E. Coli In Its Oxidised (Met) Form gi|29726529|pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2 From E. Coli In Its Oxidised (Met) Form Length = 375 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336 >gi|85711601|ref|ZP_01042658.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina baltica OS145] gi|85694461|gb|EAQ32402.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina baltica OS145] Length = 377 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 77/296 (26%), Positives = 129/296 (43%), Gaps = 25/296 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N LT E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRVDF---NKLTASEKHVFISNLKYQTLLDSIQGRSPNIALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-------YT 166 ++ +F E +HS ++ +I+ +L D E+F I +AN + YT Sbjct: 106 ETWIETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVINDQIKLRANDISRYYDDLIFYT 165 Query: 167 QTLSSPSFTTGTKDADQ------EFLQDLFVF---YVVFEGMWFYTGFAQILSLGRANKM 217 Q + T D ++ E + LF+ E + FY FA + M Sbjct: 166 QLWQTHGEGKITVDGEEHNVTRRELKKKLFLCINSVNALEAIRFYVSFACTFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE++HL +IN Q ++P + +E ++ + A E Sbjct: 226 EGNAKIIRLIARDENVHLTSTQHMINLWQDGEDDPEMAEIAEELADEAYEIFMTAVKQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVI 327 +AH G +GLN QY+++IAN R IG + P + NP PWM++ + Sbjct: 286 QWAHYLFRDGSMIGLNESMLCQYVEYIANLRMQAIGYDAPFPEQRSNPLPWMNKYL 341 >gi|260778827|ref|ZP_05887719.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260604991|gb|EEX31286.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 377 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169 ++ +F E +HS ++ +II ++ D G +F+ E I +A Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDLIQMT 165 Query: 170 ------SSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + T +D E + L+V + E + FY FA + M Sbjct: 166 NDYHRYGEGTHTINGEDVKISLHELKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN ++ +E +Q+ + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKDAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ + + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDAAYPEATSNPIPWIN 338 >gi|56460472|ref|YP_155753.1| ribonucleotide-diphosphate reductase subunit beta [Idiomarina loihiensis L2TR] gi|56179482|gb|AAV82204.1| Ribonucleotide reductase, beta subunit [Idiomarina loihiensis L2TR] Length = 377 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 77/298 (25%), Positives = 127/298 (42%), Gaps = 33/298 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N LT E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDF---NKLTASEKHVFISNLKYQTLLDSIQGRSPNIALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-------YT 166 ++ +F E +HS ++ +I+ +L D E+F I +AN + YT Sbjct: 106 ETWIETWSFFETIHSRSYTHILRNLFSDPSEVFEDIVINEQIKIRANDISKYYDDLIFYT 165 Query: 167 QTLSSPSFTTGTKDA----------DQEFLQDLFVF---YVVFEGMWFYTGFAQILSLGR 213 Q L T G D +E + LF+ E + FY FA + Sbjct: 166 QLLQ----THGEGDVVVEGKTHTVTQREIKKKLFLCINSVNALEAIRFYVSFACTFAFAE 221 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEAT 269 M G A+ + I RDE++HL ++N Q ++P + +E + + + A Sbjct: 222 RELMEGNAKIIKLIARDENVHLTSTQHILNLWQYGEDDPEMKEIAEELRDDAYEIFMTAV 281 Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSE 325 E +AH G +GLN QY+++IAN R IG + P NP PWM++ Sbjct: 282 KQEKQWAHYLFKDGSMIGLNESMLCQYVEYIANLRMQAIGFDAPFENQRSNPLPWMNK 339 >gi|194427189|ref|ZP_03059740.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B171] gi|194436109|ref|ZP_03068211.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 101-1] gi|300918603|ref|ZP_07135191.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 115-1] gi|300931418|ref|ZP_07146747.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 187-1] gi|301303305|ref|ZP_07209430.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 124-1] gi|194414810|gb|EDX31081.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B171] gi|194424837|gb|EDX40822.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 101-1] gi|300414255|gb|EFJ97565.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 115-1] gi|300460788|gb|EFK24281.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 187-1] gi|300841479|gb|EFK69239.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 124-1] gi|323961541|gb|EGB57149.1| ribonucleotide reductase [Escherichia coli H489] gi|323973062|gb|EGB68256.1| ribonucleotide reductase [Escherichia coli TA007] Length = 393 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 66 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 122 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 123 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 182 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 183 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 241 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 242 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 301 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 302 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 354 >gi|300723737|ref|YP_003713044.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus nematophila ATCC 19061] gi|297630261|emb|CBJ90912.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus nematophila ATCC 19061] Length = 376 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 123/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRIDY---NSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEQILKRAKDISAYYDDLIEMT 165 Query: 170 ------------SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 + T A ++ L + E + FY FA + M Sbjct: 166 NYYHQLGEGVHNVAGKIVTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + KE +QK + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAKECEQKCYDLFVDAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 286 EWADYLFKDGSMIGLNKDILCQYIEYITNIRMQAVGLKLPFETRSNPIPWIN 337 >gi|117530173|ref|YP_851016.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis phage Ma-LMM01] gi|86990305|dbj|BAE79256.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis phage Ma-LMM01] gi|117165785|dbj|BAF36093.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis phage Ma-LMM01] gi|124270949|dbj|BAF45776.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage Ma-LMM02] gi|124270951|dbj|BAF45777.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage Ma-LMM03] gi|124270953|dbj|BAF45778.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage Ma-HPM05] Length = 348 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 77/337 (22%), Positives = 144/337 (42%), Gaps = 31/337 (9%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +++ L +KY WA + N W+P + D+ + + + + R L + Sbjct: 28 TNIINLKDVKYKWASHLFTEMRANIWIPQATDLTPDINNYVT---MPPNMRRAFDGMLSY 84 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII-TSLGLDEGE-LF 146 +SL ++ + ++ PE + Q +E VHS ++ YII T + D+ + ++ Sbjct: 85 LTFLDSL-QTRVLPLLMPVITAPEVSICMGEQLSQEQVHSQSYAYIIETVIPTDKRDYIY 143 Query: 147 NMYREVPSITAKANWALQ-YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 ++RE P + + + Y + + + T +FL EG++F+ GF Sbjct: 144 ELWREDPVLLKRCEYIQNLYDRYIHEMTMENYTISMVSDFL---------LEGIYFFPGF 194 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 ++ M A+ + I RDE HL ++I E +W + + + Sbjct: 195 RLFYAIANERYMSATADIIKLIERDEQTHLKLISNIIRTGLAEGTLMWDTD---EIIDLF 251 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPW 322 +A EI + + G G+NA + EQY +++ N R IGL +F +Y+ NP+ Sbjct: 252 RKAAEYEIEWGLH-IGLGVNGINATTIEQYAKYLCNIRARAIGLPTVFEGRQYSRNPYAH 310 Query: 323 MSEVI-----DLKKEKNFFETRVTEYQQGAEL--KWD 352 + D NFFE+ V Y+ A++ WD Sbjct: 311 LERFAATTGEDSITRDNFFESGVI-YRNPAKVVDGWD 346 >gi|218690398|ref|YP_002398610.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli ED1a] gi|218427962|emb|CAR08882.2| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli ED1a] Length = 376 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNGKAVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|170682190|ref|YP_001744431.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli SMS-3-5] gi|170519908|gb|ACB18086.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli SMS-3-5] gi|315285847|gb|EFU45287.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 110-3] gi|315298059|gb|EFU57328.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 16-3] Length = 393 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 66 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 122 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 123 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 182 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 183 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 241 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 242 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 301 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 302 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 354 >gi|26248623|ref|NP_754663.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli CFT073] gi|74312755|ref|YP_311174.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei Ss046] gi|91211528|ref|YP_541514.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UTI89] gi|110642443|ref|YP_670173.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 536] gi|157157492|ref|YP_001463584.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli E24377A] gi|161485800|ref|NP_708125.3| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 2a str. 301] gi|161486465|ref|NP_837840.2| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 2a str. 2457T] gi|191166513|ref|ZP_03028343.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B7A] gi|191170278|ref|ZP_03031832.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli F11] gi|194433322|ref|ZP_03065602.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella dysenteriae 1012] gi|209919687|ref|YP_002293771.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli SE11] gi|215487452|ref|YP_002329883.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O127:H6 str. E2348/69] gi|218554798|ref|YP_002387711.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli IAI1] gi|218559152|ref|YP_002392065.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli S88] gi|218695841|ref|YP_002403508.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 55989] gi|218700706|ref|YP_002408335.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli IAI39] gi|227887293|ref|ZP_04005098.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 83972] gi|253772842|ref|YP_003035673.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162246|ref|YP_003045354.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli B str. REL606] gi|256017603|ref|ZP_05431468.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] gi|260844831|ref|YP_003222609.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O103:H2 str. 12009] gi|260856285|ref|YP_003230176.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O26:H11 str. 11368] gi|260868965|ref|YP_003235367.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O111:H- str. 11128] gi|293446578|ref|ZP_06663000.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|300818165|ref|ZP_07098377.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 107-1] gi|300822109|ref|ZP_07102251.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 119-7] gi|300981251|ref|ZP_07175428.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 200-1] gi|300983269|ref|ZP_07176508.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 45-1] gi|301048988|ref|ZP_07195975.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 185-1] gi|306814652|ref|ZP_07448814.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli NC101] gi|307311198|ref|ZP_07590842.1| ribonucleotide reductase [Escherichia coli W] gi|309793115|ref|ZP_07687543.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|331647890|ref|ZP_08348982.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M605] gi|331668939|ref|ZP_08369787.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA271] gi|331678186|ref|ZP_08378861.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H591] gi|26109028|gb|AAN81231.1|AE016763_190 Ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli CFT073] gi|73856232|gb|AAZ88939.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella sonnei Ss046] gi|91073102|gb|ABE07983.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli UTI89] gi|110344035|gb|ABG70272.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli 536] gi|157079522|gb|ABV19230.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E24377A] gi|190903473|gb|EDV63192.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B7A] gi|190909794|gb|EDV69379.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli F11] gi|194418416|gb|EDX34505.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella dysenteriae 1012] gi|209912946|dbj|BAG78020.1| ribonucleoside diphosphate reductase beta subunit [Escherichia coli SE11] gi|215265524|emb|CAS09927.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli O127:H6 str. E2348/69] gi|218352573|emb|CAU98352.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli 55989] gi|218361566|emb|CAQ99157.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli IAI1] gi|218365921|emb|CAR03663.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli S88] gi|218370692|emb|CAR18503.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli IAI39] gi|222033996|emb|CAP76737.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli LF82] gi|227835643|gb|EEJ46109.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 83972] gi|242377869|emb|CAQ32637.1| nrdB, subunit of B2 protein and GDP reductase [multifunctional] [Escherichia coli BL21(DE3)] gi|253323886|gb|ACT28488.1| ribonucleotide reductase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974147|gb|ACT39818.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli B str. REL606] gi|253978314|gb|ACT43984.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli BL21(DE3)] gi|257754934|dbj|BAI26436.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O26:H11 str. 11368] gi|257759978|dbj|BAI31475.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O103:H2 str. 12009] gi|257765321|dbj|BAI36816.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O111:H- str. 11128] gi|281179326|dbj|BAI55656.1| ribonucleoside diphosphate reductase beta subunit [Escherichia coli SE15] gi|291323408|gb|EFE62836.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|294490302|gb|ADE89058.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli IHE3034] gi|300299180|gb|EFJ55565.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 185-1] gi|300307615|gb|EFJ62135.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 200-1] gi|300408603|gb|EFJ92141.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 45-1] gi|300525239|gb|EFK46308.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 119-7] gi|300529309|gb|EFK50371.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 107-1] gi|305852046|gb|EFM52498.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli NC101] gi|306908704|gb|EFN39201.1| ribonucleotide reductase [Escherichia coli W] gi|307554301|gb|ADN47076.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli ABU 83972] gi|308123401|gb|EFO60663.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|312946856|gb|ADR27683.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O83:H1 str. NRG 857C] gi|313651060|gb|EFS15459.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri 2a str. 2457T] gi|315061535|gb|ADT75862.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli W] gi|315292180|gb|EFU51532.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 153-1] gi|320178793|gb|EFW53756.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii ATCC 9905] gi|320196104|gb|EFW70728.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli WV_060327] gi|320199830|gb|EFW74419.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli EC4100B] gi|323156512|gb|EFZ42666.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli EPECa14] gi|323161696|gb|EFZ47579.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli E128010] gi|323168602|gb|EFZ54282.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella sonnei 53G] gi|323171914|gb|EFZ57558.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli LT-68] gi|323176838|gb|EFZ62428.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 1180] gi|323184146|gb|EFZ69523.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 1357] gi|323188037|gb|EFZ73332.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli RN587/1] gi|323377884|gb|ADX50152.1| Ribonucleoside-diphosphate reductase [Escherichia coli KO11] gi|324006608|gb|EGB75827.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 57-2] gi|324013118|gb|EGB82337.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 60-1] gi|324117882|gb|EGC11781.1| ribonucleotide reductase [Escherichia coli E1167] gi|325496725|gb|EGC94584.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia fergusonii ECD227] gi|330912066|gb|EGH40576.1| ribonucleotide reductase of class 1a (aerobic), beta subunit [Escherichia coli AA86] gi|331043614|gb|EGI15752.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M605] gi|331064133|gb|EGI36044.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA271] gi|331074646|gb|EGI45966.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H591] gi|332096162|gb|EGJ01165.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella dysenteriae 155-74] gi|332754883|gb|EGJ85248.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri 4343-70] gi|332755286|gb|EGJ85650.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri K-671] gi|332756386|gb|EGJ86737.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri 2747-71] gi|332766056|gb|EGJ96266.1| nrdB [Shigella flexneri 2930-71] gi|333001382|gb|EGK20950.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri VA-6] gi|333002603|gb|EGK22163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri K-272] gi|333016476|gb|EGK35807.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri K-304] gi|333016745|gb|EGK36073.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri K-227] Length = 376 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|300936793|ref|ZP_07151685.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 21-1] gi|300458078|gb|EFK21571.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 21-1] Length = 405 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 78 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 134 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 135 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 194 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 195 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 253 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 254 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 313 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 314 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 366 >gi|332278613|ref|ZP_08391026.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] gi|332100965|gb|EGJ04311.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] Length = 420 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 93 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 149 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 150 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 209 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 210 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 268 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 269 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 328 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 329 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 381 >gi|324112772|gb|EGC06748.1| ribonucleotide reductase [Escherichia fergusonii B253] Length = 389 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 62 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 118 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 119 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISAYYDELIEMT 178 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 179 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 237 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 238 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 297 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 298 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 350 >gi|292488819|ref|YP_003531706.1| ribonucleoside-diphosphate reductase 1 subunit beta [Erwinia amylovora CFBP1430] gi|292899970|ref|YP_003539339.1| ribonucleoside-diphosphate reductase 1 subunit beta [Erwinia amylovora ATCC 49946] gi|291199818|emb|CBJ46941.1| ribonucleoside-diphosphate reductase 1 beta subunit [Erwinia amylovora ATCC 49946] gi|291554253|emb|CBA21550.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia amylovora CFBP1430] gi|312172977|emb|CBX81232.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia amylovora ATCC BAA-2158] Length = 376 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 130/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN------------- 160 ++ AF E +HS ++ +II ++ D +F+ I ++A Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMT 165 Query: 161 --WAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 W L + T ++ + T + ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHQVNGKTVTVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++P + KE +Q+ + A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R + +GL+ FK NP PW++ Sbjct: 285 KEWAEYLFSGGSMIGLNKDILWQYIEYITNIRMNAVGLDLPFKTRSNPIPWIN 337 >gi|226327851|ref|ZP_03803369.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198] gi|225203555|gb|EEG85909.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198] Length = 376 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 124/294 (42%), Gaps = 28/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ +F E +HS ++ +II ++ D +F+ E I +A Y Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILKRARDISSYYDELINLT 165 Query: 166 ----------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 Q T K Q +L + V E + FY FA + Sbjct: 166 NLYHMYGEGEHQVKGKTVHVTLRKLKKQLYLCLMSVN--ALEAIRFYVSFACSFAFAERE 223 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLL 271 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + EA Sbjct: 224 LMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAEECEQECYDLFVEAAEQ 283 Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 E +A +G +GLN QY+++I N R +GL+ FK NP PW++ Sbjct: 284 EKEWAEYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFKARSNPIPWIN 337 >gi|170019452|ref|YP_001724406.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli ATCC 8739] gi|187775748|ref|ZP_02798054.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188024880|ref|ZP_02774660.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|189010171|ref|ZP_02805091.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189402101|ref|ZP_02779989.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189403050|ref|ZP_02792862.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189404930|ref|ZP_02812148.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC869] gi|189405663|ref|ZP_02823406.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC508] gi|208806716|ref|ZP_03249053.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208812585|ref|ZP_03253914.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208820390|ref|ZP_03260710.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209398142|ref|YP_002271641.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|293415528|ref|ZP_06658171.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] gi|300948933|ref|ZP_07162994.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 116-1] gi|300958921|ref|ZP_07171024.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 175-1] gi|307138893|ref|ZP_07498249.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli H736] gi|169754380|gb|ACA77079.1| Ribonucleoside-diphosphate reductase [Escherichia coli ATCC 8739] gi|187771218|gb|EDU35062.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188016038|gb|EDU54160.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|189002108|gb|EDU71094.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189357709|gb|EDU76128.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189362845|gb|EDU81264.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189372811|gb|EDU91227.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC869] gi|189378868|gb|EDU97284.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC508] gi|208726517|gb|EDZ76118.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208733862|gb|EDZ82549.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208740513|gb|EDZ88195.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209159542|gb|ACI36975.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|291433176|gb|EFF06155.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] gi|300314424|gb|EFJ64208.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 175-1] gi|300451587|gb|EFK15207.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 116-1] gi|315136867|dbj|BAJ44026.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli DH1] gi|320192144|gb|EFW66789.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. EC1212] gi|320641061|gb|EFX10540.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. G5101] gi|320646450|gb|EFX15369.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H- str. 493-89] gi|320651547|gb|EFX19927.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H- str. H 2687] gi|320657299|gb|EFX25101.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320667818|gb|EFX34726.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. LSU-61] gi|323936632|gb|EGB32918.1| ribonucleotide reductase [Escherichia coli E1520] gi|323941071|gb|EGB37258.1| ribonucleotide reductase [Escherichia coli E482] gi|326344044|gb|EGD67805.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. 1044] Length = 389 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 62 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 118 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 119 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 178 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 179 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 237 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 238 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 297 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 298 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 350 >gi|193068232|ref|ZP_03049196.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E110019] gi|300903617|ref|ZP_07121535.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 84-1] gi|300926340|ref|ZP_07142140.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 182-1] gi|301328725|ref|ZP_07221778.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 78-1] gi|30041924|gb|AAP17650.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella flexneri 2a str. 2457T] gi|56383622|gb|AAN43832.2| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella flexneri 2a str. 301] gi|192958511|gb|EDV88950.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E110019] gi|300404353|gb|EFJ87891.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 84-1] gi|300417617|gb|EFK00928.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 182-1] gi|300844873|gb|EFK72633.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 78-1] gi|315255170|gb|EFU35138.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 85-1] Length = 389 Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 62 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 118 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 119 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 178 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 179 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 237 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 238 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 297 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 298 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 350 >gi|331653669|ref|ZP_08354670.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M718] gi|331048518|gb|EGI20594.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M718] Length = 449 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 122 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 178 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 179 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 238 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 239 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 297 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 298 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 357 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 358 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 410 >gi|331642864|ref|ZP_08343999.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H736] gi|331039662|gb|EGI11882.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H736] Length = 449 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 122 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 178 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 179 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 238 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 239 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 297 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 298 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 357 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 358 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 410 >gi|326565416|gb|EGE15593.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 103P14B1] Length = 376 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + L+ E+ + NL + +S+ + + + +S PE Sbjct: 49 WRPEEIDVSKDRIDFAE---LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D ++F + I +A+ +Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCA 165 Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 G D++ ++ L++ V V E + FY FA + M Sbjct: 166 KLYDLHGEGIYQIDEQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN +IN ++ ++P + + Q+++ + A E Sbjct: 226 EGNAKIIKMIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 A+A+ G +GLN QY++FI N R IGL +F+ NP PW++ Sbjct: 286 AWANYLFKDGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWIN 337 >gi|323497713|ref|ZP_08102728.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] gi|323317189|gb|EGA70185.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] Length = 377 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 123/294 (41%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ +F E +HS ++ +II ++ D G +F+ E I +A Y Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGIVFDDIVENEHILKRAEDISHYYDDLIQLT 165 Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 T T++ + D ++ L + E + FY FA + Sbjct: 166 NDYHRYGEGTHTINGEEVSIKLHDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL +IN ++ +E +Q+ + EA E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKEAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL + + T NP PW++ Sbjct: 285 KEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLGAAYPEATSNPIPWIN 338 >gi|291283479|ref|YP_003500297.1| Ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Escherichia coli O55:H7 str. CB9615] gi|290763352|gb|ADD57313.1| Ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Escherichia coli O55:H7 str. CB9615] Length = 389 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 62 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 118 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 119 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIITNEQIQKRAEGISSYYDELIEMT 178 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 179 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 237 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 238 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 297 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 298 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 350 >gi|149911236|ref|ZP_01899859.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp. PE36] gi|149805690|gb|EDM65689.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp. PE36] Length = 376 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 127/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSKDRIDYQQ---LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D E+F+ I +A Y L + + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIINDPSEVFDDIVANEEILKRAKDIAGYYDDLINAT 165 Query: 174 -----FTTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 GT + E + + L++ V V E + FY FA + M Sbjct: 166 QQLHQLGEGTHVVNGETIVVSQRAVKKKLYLAMVSVNVLEAVRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLW--TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N + ++P + + E Q+++ + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHILNLMADGKDDPEMQEISIECFQETQKIFTDAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN Y+++I N R +GL F+ NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILSDYIEYITNTRMAAVGLPKAFEVKSNPLPWIN 337 >gi|110806205|ref|YP_689725.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 5 str. 8401] gi|110615753|gb|ABF04420.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella flexneri 5 str. 8401] gi|281601680|gb|ADA74664.1| putative ribonucleotide reductase, beta subunit [Shigella flexneri 2002017] Length = 453 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 126 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 182 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 183 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 242 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 243 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 301 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 302 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 361 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 362 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 414 >gi|324020907|gb|EGB90126.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 117-3] Length = 420 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 93 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 149 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 150 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 209 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 210 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 268 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 269 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 328 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 329 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 381 >gi|331663742|ref|ZP_08364652.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA143] gi|323977567|gb|EGB72653.1| ribonucleotide reductase [Escherichia coli TW10509] gi|331059541|gb|EGI31518.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA143] Length = 389 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 62 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 118 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 119 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 178 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 179 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 237 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 238 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 297 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 298 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 350 >gi|331658316|ref|ZP_08359278.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA206] gi|307626227|gb|ADN70531.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UM146] gi|331056564|gb|EGI28573.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA206] Length = 389 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 132/293 (45%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 62 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 118 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 119 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 178 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 179 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 237 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 238 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 297 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 298 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 350 >gi|88859281|ref|ZP_01133921.1| ribonucleotide-diphosphate reductase beta subunit [Pseudoalteromonas tunicata D2] gi|88818298|gb|EAR28113.1| ribonucleotide-diphosphate reductase beta subunit [Pseudoalteromonas tunicata D2] Length = 376 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSKDRVDFEN---LPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ +F+ + I +A+ +Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNVTKQPELIFDDIVDNDKIKERADEVTRYYDDLIEYT 165 Query: 174 -----FTTGTKDA-DQEFLQDLF---------VFYV-VFEGMWFYTGFAQILSLGRANKM 217 + G DQ + +LF + V + E + FY FA + M Sbjct: 166 SIYNLYGEGKHQINDQTVVINLFELKKKLYRAIMSVNILEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLW--TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL+ ++N Q ++P + + +++S M A E Sbjct: 226 EGNAKIIKLIARDEALHLSGTQHMLNIMQDGQDDPEMAIVAAQLREESIEMFRTAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNVRMSAVGLPQQFSITSNPIPWIN 337 >gi|56412825|ref|YP_149900.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361758|ref|YP_002141394.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127082|gb|AAV76588.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093234|emb|CAR58679.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 376 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 131/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIETT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|329119976|ref|ZP_08248648.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327463889|gb|EGF10203.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 384 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + I A+A + ++YT Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYT 172 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L G K +E + L++ + V E + FY FA + M Sbjct: 173 QYYNLLGEGVHQVGGKTVVVKLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E Q + + +A E Sbjct: 233 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIAVELQDECFKLFKKAAEQEK 292 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMS 324 +A G +GLN QY+++I N R +GL+P F + +NP PW++ Sbjct: 293 EWAAYLFKDGSMIGLNKDILCQYVEYITNHRMIAVGLDPAFPASNQNPIPWIN 345 >gi|42543283|pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At Neutral Ph gi|42543284|pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At Neutral Ph gi|42543506|pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli gi|42543507|pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli Length = 375 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336 >gi|259907948|ref|YP_002648304.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia pyrifoliae Ep1/96] gi|224963570|emb|CAX55060.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia pyrifoliae Ep1/96] gi|283477829|emb|CAY73745.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia pyrifoliae DSM 12163] gi|310768143|gb|ADP13093.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia sp. Ejp617] Length = 376 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN------------- 160 ++ AF E +HS ++ +II ++ D +F+ I ++A Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMT 165 Query: 161 --WAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 W L + T ++ + T + A ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHQVNGKTVTVNLR-ALKKQLYICLMSVNALEAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++P + KE +Q+ + A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R + +GL+ FK NP PW++ Sbjct: 285 KEWAEYLFSGGSMIGLNKDILCQYIEYITNIRMNAVGLDLPFKTRSNPIPWIN 337 >gi|225075859|ref|ZP_03719058.1| hypothetical protein NEIFLAOT_00882 [Neisseria flavescens NRL30031/H210] gi|224952805|gb|EEG34014.1| hypothetical protein NEIFLAOT_00882 [Neisseria flavescens NRL30031/H210] Length = 388 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A +S PE Sbjct: 60 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 116 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + I A+A + ++YT Sbjct: 117 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYT 176 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L S G K +E + L++ + V E + FY FA + M Sbjct: 177 QYYNLLGEGSHNIGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 236 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E Q + + +A E Sbjct: 237 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIANELQDECFNLFKKAAEQEK 296 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ T+NP PW++ Sbjct: 297 EWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 349 >gi|494379|pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide Reductase From Escherichia Coli. Spectroscopic And Crystallographic Characterization gi|494380|pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide Reductase From Escherichia Coli. Spectroscopic And Crystallographic Characterization gi|494553|pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli Ribonucleotide Reductase Protein R2 gi|494554|pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli Ribonucleotide Reductase Protein R2 Length = 375 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336 >gi|152979144|ref|YP_001344773.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus succinogenes 130Z] gi|150840867|gb|ABR74838.1| Ribonucleoside-diphosphate reductase [Actinobacillus succinogenes 130Z] Length = 376 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYAA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT D + + L++ + E + FY FA + M Sbjct: 166 QLYSLYGEGTYQVDGKECAVTLRNLKKRLYLCLMSVNALEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 A+A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 AWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFEARSNPIPWIN 337 >gi|37526941|ref|NP_930285.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786374|emb|CAE15427.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotide reductase 1) (B2 protein) (R2 protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ +F E +HS ++ +II ++ D +F+ Y ++ +T Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEEILKRAKDISAYYDDLIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + T ++ + T + ++ L + E + FY FA + Sbjct: 166 NHYQLFGEGTHQIAGKTITASLRGLKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + KE +Q+ + +A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAKECEQQCYDLFVQAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A +G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFETRSNPIPWIN 337 >gi|317164437|gb|ADV07978.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae TCDC-NG08107] Length = 377 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L G K + + L++ + V E + FY FA + M Sbjct: 166 QYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +++P + E Q + + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 286 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLSAGFEGANQNPIPWIN 338 >gi|153000811|ref|YP_001366492.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella baltica OS185] gi|160875520|ref|YP_001554836.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella baltica OS195] gi|151365429|gb|ABS08429.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS185] gi|160861042|gb|ABX49576.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS195] Length = 386 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 126/291 (43%), Gaps = 24/291 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A +S PE Sbjct: 59 WRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 115 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN---MYREVPS----ITAKANWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + +E+ S I A + +Q T Sbjct: 116 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILSRATDIAAYYDHLIQLT 175 Query: 167 QTLSSPSFTTGTKDADQEFL------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q T D + + + L++ + E + FY FA + M Sbjct: 176 QVFHLLGAGTHVIDGKEVIVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM 235 Query: 218 VGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN I I Q ++P + E QQ++ + +A E Sbjct: 236 EGNAKIIRLIARDEALHLNSTQHILSIMQGGKDDPEMGEIAAECQQEAFDLFFKAAEQEK 295 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +A G +GLN QY++FI N+R + L + NP PWM Sbjct: 296 EWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYPEITNPLPWM 346 >gi|161617990|ref|YP_001595470.1| ribonucleotide reductase beta subunit [Enterobacteria phage phiEcoM-GJ1] gi|150416409|gb|ABR68787.1| ribonucleotide reductase beta subunit [Enterobacteria phage phiEcoM-GJ1] Length = 372 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 126/291 (43%), Gaps = 26/291 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF---FASSESLVANNIVLAIYRHLSN 110 W P EV + D ++ L +E+ + NL + S + N ++L I +S Sbjct: 49 WRPEEVDVSQDRIDYQK---LPANEQHIFTSNLRYQILLDSIQGRGPNTVLLPI---VSI 102 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 PE ++ +F E +HS ++ +II ++ D +F+ I A+A QY L Sbjct: 103 PELETWIETWSFSETIHSRSYTHIIRNIVTDPSIIFDEIVTNEHIKARAIGISQYYDELQ 162 Query: 171 SPS-----FTTGTKDADQEFLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKMV 218 + F G+ + L++L + E + FY FA + M Sbjct: 163 QLTALWQLFGEGSHAGHEISLRELKKKLYLCLMSINALEAIRFYVSFACSFAFAERKLME 222 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLW--TKEFQQKSRTMLHEATLLEIA 274 G A+ + I RDE+LHL ++N + ++P + E +Q+ + + +A E Sbjct: 223 GNAKIIRLIARDEALHLTGTQHMLNLLASGKDDPEMGEIAAECRQECQKLFEDAAQQEKD 282 Query: 275 YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN Y+++I N R +GL+ FK NP PW++ Sbjct: 283 WADYLFKDGSMIGLNKQILCGYVEYITNIRMQAVGLDAPFKGATNPIPWIN 333 >gi|42565480|gb|AAS21007.1| ribonucleoside-diphosphate reductase R2 [Hyacinthus orientalis] Length = 197 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 87/204 (42%), Gaps = 20/204 (9%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 V ++ +L D + P+KY WE Y A + W EV + D W++ LT DE Sbjct: 8 VAEEPLLAPNPDRFCMFPIKYPEIWEMYKKAEASFWTAEEVDLSQDTRHWEA---LTADE 64 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+ + + E R + Q E +HS + ++ S Sbjct: 65 RHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESY 124 Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D E LF+ +P + KA WAL++ D + F Q + F V Sbjct: 125 IKDPDEKNRLFHAIETIPCVAKKAEWALRWI-------------DGGKSFAQRVVAFACV 171 Query: 196 FEGMWFYTGFAQILSLGRANKMVG 219 EG++F I L + M G Sbjct: 172 -EGIFFSGVSCSIFWLKKRGLMPG 194 >gi|313668429|ref|YP_004048713.1| ribonucleoside diphosphate reductase I beta chain [Neisseria lactamica ST-640] gi|313005891|emb|CBN87347.1| ribonucleoside diphosphate reductase I beta chain [Neisseria lactamica 020-06] Length = 377 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L G K + + L++ + V E + FY FA + M Sbjct: 166 QYYNLLGEGMHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +++P + E Q + + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAELQDECFRLFKKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 286 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 338 >gi|329298015|ref|ZP_08255351.1| ribonucleotide-diphosphate reductase subunit beta [Plautia stali symbiont] Length = 376 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 125/293 (42%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ AF E +HS ++ +II ++ D ++F+ I A+A +Y Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSQVFDDIVTNEQILARAQDISKYYDDLIEMT 165 Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 T ++ S T + A ++ L + E + FY FA + Sbjct: 166 NYWHLLGEGTHQVAGKSVTVNLR-ALKKQLYICLMSVNALEAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ KE + R + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLMRTGEDDPEMKEIAAECRDECFDLFKKAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWAEYLFSGGSMIGLNKDILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|4389292|pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a gi|40889714|pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of Ribonucleotide Reductase gi|40889715|pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of Ribonucleotide Reductase Length = 375 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS +F +II ++ D +F+ Y E+ +T Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RD +LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336 >gi|156975012|ref|YP_001445919.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio harveyi ATCC BAA-1116] gi|156526606|gb|ABU71692.1| hypothetical protein VIBHAR_02734 [Vibrio harveyi ATCC BAA-1116] Length = 377 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165 Query: 174 -----FTTG--------TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + G K + + + L++ + E + FY FA + M Sbjct: 166 NDYHRYGEGEHVLNGETVKVSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLW---TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN +IN ++ ++ L+ +E +Q+ + EA E Sbjct: 226 EGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFLFMQIAEEEKQECFDLFKEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL + + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEATSNPIPWIN 338 >gi|161572976|ref|YP_207754.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae FA 1090] gi|194098862|ref|YP_002001926.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae NCCP11945] gi|239999147|ref|ZP_04719071.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae 35/02] gi|240013945|ref|ZP_04720858.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae DGI18] gi|240016387|ref|ZP_04722927.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae FA6140] gi|240080506|ref|ZP_04725049.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae FA19] gi|240113126|ref|ZP_04727616.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae MS11] gi|240115882|ref|ZP_04729944.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID18] gi|240118180|ref|ZP_04732242.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID1] gi|240121514|ref|ZP_04734476.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID24-1] gi|240123728|ref|ZP_04736684.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID332] gi|240125919|ref|ZP_04738805.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae SK-92-679] gi|240128431|ref|ZP_04741092.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|193934152|gb|ACF29976.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae NCCP11945] Length = 377 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L G K + + L++ + V E + FY FA + M Sbjct: 166 QYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +++P + E Q + + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 286 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 338 >gi|149197800|ref|ZP_01874849.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera araneosa HTCC2155] gi|149139021|gb|EDM27425.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera araneosa HTCC2155] Length = 376 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 78/293 (26%), Positives = 125/293 (42%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A +K L E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDLSRDRADFKK---LPAHEKHIFLSNLKYQTLLDSVQGRSPNVAFLPVISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D E+F+ SI +A+ Y + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSEIFDDIVNNESIIQRASSVSHYYDSFIELQ 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 GT + +E + LF+ V V E + FY FA + M Sbjct: 166 CYYNLLGEGTHMINDVPVVVNMRELKRRLFLTVVSVNVLEAIRFYVSFACSFAFAERAVM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIE---NPHL--WTKEFQQKSRTMLHEATLLE 272 G A+ + I RDE+LHL G + QI E +P + E + + + A E Sbjct: 226 EGNAKIIKLIARDEALHLT-GTQQMIQIFREGKDDPEMAEIAAECEGQVYQIFSSAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLNA Y+++I N R G + +F T+NP PWM+ Sbjct: 285 KEWAKFLFRDGSMIGLNADILGDYVEYITNVRLKASGYKNVFPTTQNPLPWMN 337 >gi|254493923|ref|ZP_05107094.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae 1291] gi|260440303|ref|ZP_05794119.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae DGI2] gi|268594982|ref|ZP_06129149.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae 35/02] gi|268596639|ref|ZP_06130806.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae FA19] gi|268599210|ref|ZP_06133377.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae MS11] gi|268601557|ref|ZP_06135724.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID18] gi|268603896|ref|ZP_06138063.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID1] gi|268682359|ref|ZP_06149221.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID332] gi|268684517|ref|ZP_06151379.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae SK-92-679] gi|268686827|ref|ZP_06153689.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae SK-93-1035] gi|291043595|ref|ZP_06569311.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae DGI2] gi|293398906|ref|ZP_06643071.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria gonorrhoeae F62] gi|59717937|gb|AAW89342.1| putative ribonucleoside diphosphate reductase I beta chain [Neisseria gonorrhoeae FA 1090] gi|226512963|gb|EEH62308.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae 1291] gi|268548371|gb|EEZ43789.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae 35/02] gi|268550427|gb|EEZ45446.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae FA19] gi|268583341|gb|EEZ48017.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae MS11] gi|268585688|gb|EEZ50364.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID18] gi|268588027|gb|EEZ52703.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID1] gi|268622643|gb|EEZ55043.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID332] gi|268624801|gb|EEZ57201.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae SK-92-679] gi|268627111|gb|EEZ59511.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae SK-93-1035] gi|291012058|gb|EFE04047.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae DGI2] gi|291610320|gb|EFF39430.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria gonorrhoeae F62] Length = 384 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 113 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L G K + + L++ + V E + FY FA + M Sbjct: 173 QYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +++P + E Q + + +A E Sbjct: 233 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQEK 292 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 293 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345 >gi|255656920|ref|ZP_05402329.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-23m63] gi|296452239|ref|ZP_06893946.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP08] gi|296877591|ref|ZP_06901622.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP07] gi|296258926|gb|EFH05814.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP08] gi|296431442|gb|EFH17258.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP07] Length = 323 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 33/303 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + D+ +W N L++ E+ + K+ LG ++ NN + ++ N + Sbjct: 34 WLPEEISVSKDIKIW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSMMSLTENLQR 90 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL-QYTQTLS 170 + L E +H+ ++ I +L + ELF P++ KA+ L QY T Sbjct: 91 KAVLSFMGTMEEIHAKSYSSIFMTLLSNSEIDELFEWIETEPTLQRKADLVLAQYENT-- 148 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 +QE L V V E FY+GF L L KMV E I+RD Sbjct: 149 ----------TNQEGLYLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGEIISLILRD 198 Query: 231 ESLHLNFGIDVINQI-----KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 ESLH + + +I K++ L K + R M +E I Y + K V Sbjct: 199 ESLHGKYIGLLAQEIYDSFDKMDKEILEEKMYSILYRLMENEIEYTNIIYRESGLEKEVV 258 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQ 344 ++++ ANR +G E L+ NP ++ + K +FF T+ YQ Sbjct: 259 --------NFLKYNANRALENLGFEKLYTVDAINPIV-LNGLSTETKTHDFFSTKGNGYQ 309 Query: 345 QGA 347 +G Sbjct: 310 KGV 312 >gi|217973230|ref|YP_002357981.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella baltica OS223] gi|304408853|ref|ZP_07390474.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS183] gi|307302856|ref|ZP_07582611.1| Ribonucleoside-diphosphate reductase [Shewanella baltica BA175] gi|217498365|gb|ACK46558.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS223] gi|304352674|gb|EFM17071.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS183] gi|306913216|gb|EFN43638.1| Ribonucleoside-diphosphate reductase [Shewanella baltica BA175] gi|315267707|gb|ADT94560.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS678] Length = 376 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 126/291 (43%), Gaps = 24/291 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN---MYREVPS----ITAKANWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + +E+ S I A + +Q T Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILSRATDIAAYYDHLIQLT 165 Query: 167 QTLSSPSFTTGTKDADQEFL------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q T D + + + L++ + E + FY FA + M Sbjct: 166 QVFHLLGAGTHVIDGKEVIVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN I I Q ++P + E QQ++ + +A E Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILSIMQGGKDDPEMGEIAAECQQEAFDLFFKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +A G +GLN QY++FI N+R + L + NP PWM Sbjct: 286 EWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYPEITNPLPWM 336 >gi|51595597|ref|YP_069788.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108806924|ref|YP_650840.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Antiqua] gi|108812924|ref|YP_648691.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Nepal516] gi|145599749|ref|YP_001163825.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Pestoides F] gi|149366796|ref|ZP_01888830.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis CA88-4125] gi|153950490|ref|YP_001401734.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis IP 31758] gi|161484771|ref|NP_670275.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] gi|161511422|ref|NP_992302.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|162418296|ref|YP_001605847.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Angola] gi|165924721|ref|ZP_02220553.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938305|ref|ZP_02226863.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009974|ref|ZP_02230872.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211802|ref|ZP_02237837.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167400353|ref|ZP_02305866.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419574|ref|ZP_02311327.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424117|ref|ZP_02315870.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470792|ref|ZP_02335496.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis FV-1] gi|170025073|ref|YP_001721578.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis YPIII] gi|186894660|ref|YP_001871772.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218928372|ref|YP_002346247.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis CO92] gi|229841157|ref|ZP_04461316.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843262|ref|ZP_04463408.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. India 195] gi|229894122|ref|ZP_04509308.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Pestoides A] gi|229903354|ref|ZP_04518467.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Nepal516] gi|270487164|ref|ZP_06204238.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis KIM D27] gi|294503227|ref|YP_003567289.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis Z176003] gi|51588879|emb|CAH20493.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pseudotuberculosis IP 32953] gi|108776572|gb|ABG19091.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Nepal516] gi|108778837|gb|ABG12895.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Antiqua] gi|115346983|emb|CAL19874.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis CO92] gi|145211445|gb|ABP40852.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Pestoides F] gi|149291170|gb|EDM41245.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis CA88-4125] gi|152961985|gb|ABS49446.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pseudotuberculosis IP 31758] gi|162351111|gb|ABX85059.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis Angola] gi|165913683|gb|EDR32302.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923781|gb|EDR40913.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991370|gb|EDR43671.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207573|gb|EDR52053.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962315|gb|EDR58336.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050302|gb|EDR61710.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056966|gb|EDR66729.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751607|gb|ACA69125.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis YPIII] gi|186697686|gb|ACC88315.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+] gi|229679124|gb|EEO75227.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Nepal516] gi|229689609|gb|EEO81670.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. India 195] gi|229697523|gb|EEO87570.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704007|gb|EEO91020.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Pestoides A] gi|262361266|gb|ACY57987.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis D106004] gi|262365197|gb|ACY61754.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis D182038] gi|270335668|gb|EFA46445.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis KIM D27] gi|294353686|gb|ADE64027.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis Z176003] gi|320015945|gb|ADV99516.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 376 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ +F E +HS ++ +II ++ D +F+ Y ++ +T Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T ++ + +D ++ L + E + FY FA + Sbjct: 166 SYYHLLGEGTHQVNGKTVVVKLRDLKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N +++ ++P + +E QQ+ + A E Sbjct: 225 MEGNAKIIKMIARDEALHLTGTQHILNLMRLGEDDPEMAEIAEECQQQCYDLFVLAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F NP PW++ Sbjct: 285 KEWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFSTRTNPIPWIN 337 >gi|261253084|ref|ZP_05945657.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio orientalis CIP 102891] gi|260936475|gb|EEX92464.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio orientalis CIP 102891] Length = 377 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 125/293 (42%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D G +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRAKDISGYYDDLIQLT 165 Query: 174 -----FTTGTKDADQE--------FLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT + E + L++ + E + FY FA + M Sbjct: 166 NDYHRYGEGTHTINGEEVTITLHNLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN ++ +E +Q+ + EA E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL + + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLGAAYPEATSNPIPWIN 338 >gi|167623961|ref|YP_001674255.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella halifaxensis HAW-EB4] gi|167353983|gb|ABZ76596.1| Ribonucleoside-diphosphate reductase [Shewanella halifaxensis HAW-EB4] Length = 376 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 73/291 (25%), Positives = 124/291 (42%), Gaps = 24/291 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L + E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDKIDYA---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A+ +Y L S Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILKRASDIAKYYDHLIKLS 165 Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 G+ + D E ++ L++ V V E + FY FA + M Sbjct: 166 QAYHLLGEGSHEIDGEIIEVTTREIKKALYLCMVSVNVLEAIRFYVSFACSFAFAERKVM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDV--INQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN + I Q ++P + KE +Q + + +A E Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILKIMQGGKDDPEMAEIAKECEQTAIDIFVKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +A G +GLN QY+++I N R + + NP PWM Sbjct: 286 EWAKYLFKDGSMIGLNETILCQYVEYITNERMKSVNFASPYAEQTNPLPWM 336 >gi|157961884|ref|YP_001501918.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella pealeana ATCC 700345] gi|157846884|gb|ABV87383.1| Ribonucleoside-diphosphate reductase [Shewanella pealeana ATCC 700345] Length = 376 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 24/291 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L + E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDKIDYA---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +FN E I +A+ Y L S Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFNDIVENEEILKRASDIANYYDHLIKLS 165 Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 G+ + D E ++ L++ V V E + FY FA + M Sbjct: 166 QAYHLLGEGSHEIDGEIIEVTKREIKKALYLCMVSVNVLEAIRFYVSFACSFAFAERKVM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN ++ + ++P + KE +Q + + +A E Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILKIMHAGKDDPEMAEIAKECEQTAIDIFIKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +A G +GLN QY+++I N R + + NP PWM Sbjct: 286 EWAKYLFKDGSMIGLNETILCQYVEYITNERMKAVNFASPYAEQTNPLPWM 336 >gi|323494790|ref|ZP_08099889.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio brasiliensis LMG 20546] gi|323310983|gb|EGA64148.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio brasiliensis LMG 20546] Length = 377 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 126/293 (43%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D G +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDLIQMT 165 Query: 174 -----FTTGTKDADQE--------FLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT + E + L+V + E + FY FA + M Sbjct: 166 NDYHRYGEGTHQINGEEVTIKLHDLKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN ++ +E +Q+ + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKDAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ + + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDAAYPEATSNPIPWIN 338 >gi|90412217|ref|ZP_01220223.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium profundum 3TCK] gi|90326941|gb|EAS43326.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium profundum 3TCK] Length = 377 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/297 (23%), Positives = 129/297 (43%), Gaps = 33/297 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRIDY---NNLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ +F E +HS ++ +II ++ D +F+ E I +A +Y Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENDYIIKRAGDISKYYDDLIAAT 165 Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGR 213 T++ + T + E + L+V + E + FY FA + Sbjct: 166 SDYHRLGEGKHTVNGETITVNLR----EIKKKLYVCMMSVNALEAIRFYVSFACSFAFAE 221 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEAT 269 M G A+ + I RDE+LHL ++N + + ++P + +E QQ+ + EA Sbjct: 222 RELMEGNAKIIKLIARDEALHLTGTQHILNLLRGRHDDPEMADIAQECQQECFEIFKEAA 281 Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 E +A G +GLN QY+++I N R +GL+ + +NP PW++ Sbjct: 282 EQEKEWAEYLFKDGSMIGLNKEILCQYVEYITNLRMKAVGLDQAYPGANQNPIPWIN 338 >gi|91227184|ref|ZP_01261643.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 12G01] gi|262393879|ref|YP_003285733.1| ribonucleotide reductase of class Ia (aerobic) subunit beta [Vibrio sp. Ex25] gi|269967067|ref|ZP_06181135.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 40B] gi|91188712|gb|EAS75000.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 12G01] gi|262337473|gb|ACY51268.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. Ex25] gi|269828326|gb|EEZ82592.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 40B] Length = 377 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 124/293 (42%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165 Query: 174 -----FTTG--------TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + G K + + + L++ + E + FY FA + M Sbjct: 166 NDYHRYGEGEHVLNGETVKVSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN +IN ++ +E +Q + EA E Sbjct: 226 EGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFTFMQIAEEAKQDCFDLFKEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL + + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEATTNPIPWIN 338 >gi|113970253|ref|YP_734046.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. MR-4] gi|114047558|ref|YP_738108.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. MR-7] gi|113884937|gb|ABI38989.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. MR-4] gi|113889000|gb|ABI43051.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. MR-7] Length = 376 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 24/291 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + R I + ++ T Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQEILRRATDIAEYYDHLIKLT 165 Query: 167 QTLSSPSFTTGTKDAD------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q T D + + + L++ + E + FY FA + M Sbjct: 166 QVYHLLGEGTHVIDGEPIEVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN I I Q ++P + E QQ++ + +A E Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILTIMQAGKDDPEMGEIAAECQQEAYNLFLKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +A G +GLN QY+++I N+R + L + NP PWM Sbjct: 286 EWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPQPYAEQSNPLPWM 336 >gi|253989035|ref|YP_003040391.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638141|emb|CAR66767.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid reductase 1) (b2 protein) (r2 protein) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780485|emb|CAQ83647.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid reductase 1) (b2 protein) (r2 protein) [Photorhabdus asymbiotica] Length = 376 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 130/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITA--------K 158 ++ +F E +HS ++ +II ++ D +F+ + + I+A Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEEILKRAKDISAYYDDLIEMT 165 Query: 159 ANWAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 N+ L + T ++ + T ++ ++ L + E + FY FA + Sbjct: 166 NNYQLFGEGTHQIAGKTITVSLRELKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + E +Q+ + +A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIANECEQQCYDLFVQAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A +G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFSEGSMIGLNRDILCQYVEYITNIRMQAVGLKLPFETRSNPIPWIN 337 >gi|282600304|ref|ZP_05973774.2| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] gi|282565783|gb|EFB71318.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] Length = 380 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 128/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 53 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 109 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 110 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILKRAKDISAYYDKLIEMT 169 Query: 174 -----FTTGTKD--------ADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F GT + +E + L++ + E + FY FA + M Sbjct: 170 NYYHMFGEGTHTFGGKQIVVSLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 229 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E +++ + +A E Sbjct: 230 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAECEEQCYQLFVDAAEQEK 289 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A +G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 290 EWAEYLFSEGSMIGLNKEILCQYVEYITNIRMQAVGLKLPFEARSNPIPWIN 341 >gi|225023977|ref|ZP_03713169.1| hypothetical protein EIKCOROL_00844 [Eikenella corrodens ATCC 23834] gi|224943002|gb|EEG24211.1| hypothetical protein EIKCOROL_00844 [Eikenella corrodens ATCC 23834] Length = 384 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + I A+A + ++YT Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYT 172 Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 Q ++ + +D ++ L V+ E + FY FA + Sbjct: 173 QYYNLLGEGEHRVNGKTIVVSLRDLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 231 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + E + + +A E Sbjct: 232 MEGNAKIIKLIARDEALHLTSTQHMLNLMRSGTDDPEMAEIAAELENDCFELFKKAAEQE 291 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F T+NP PW++ Sbjct: 292 KEWAEYLFKDGSMIGLNKDILCQYVEYITNHRMMAVGLNAAFPAATQNPIPWIN 345 >gi|296113118|ref|YP_003627056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Moraxella catarrhalis RH4] gi|295920812|gb|ADG61163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Moraxella catarrhalis RH4] Length = 380 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + L+ E+ + NL + +S+ + + + +S PE Sbjct: 53 WRPEEIDVSKDRIDFAE---LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 109 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D ++F + I +A+ +Y L + Sbjct: 110 ETWIETWSFSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCA 169 Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 G D + ++ L++ V V E + FY FA + M Sbjct: 170 KLYDLHGEGVYQIDGQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVM 229 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN +IN ++ ++P + + Q+++ + A E Sbjct: 230 EGNAKIIKMIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEK 289 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 A+A+ G +GLN QY++FI N R IGL +F+ NP PW++ Sbjct: 290 AWANYLFKDGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWIN 341 >gi|326560494|gb|EGE10876.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 7169] gi|326570427|gb|EGE20467.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis BC8] gi|326575699|gb|EGE25622.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis CO72] gi|326577166|gb|EGE27060.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis O35E] Length = 376 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + L+ E+ + NL + +S+ + + + +S PE Sbjct: 49 WRPEEIDVSKDRIDFAE---LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D ++F + I +A+ +Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCA 165 Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 G D + ++ L++ V V E + FY FA + M Sbjct: 166 KLYDLHGEGVYQIDGQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN +IN ++ ++P + + Q+++ + A E Sbjct: 226 EGNAKIIKMIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 A+A+ G +GLN QY++FI N R IGL +F+ NP PW++ Sbjct: 286 AWANYLFKDGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWIN 337 >gi|241760495|ref|ZP_04758588.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria flavescens SK114] gi|241318999|gb|EER55501.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria flavescens SK114] Length = 377 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + I A+A + ++YT Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYT 165 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L S G K +E + L++ + V E + FY FA + M Sbjct: 166 QYYNLLGEGSHNIGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E Q + + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIAVELQDECFKLFKKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ T+NP PW++ Sbjct: 286 EWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 338 >gi|51557509|ref|YP_068343.1| ribonucleotide reductase subunit 2 [Suid herpesvirus 1] gi|1710400|sp|P50645|RIR2_SUHVK RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|437737|emb|CAA50977.1| ribonucleotide reductase [Suid herpesvirus 1] gi|525265|emb|CAA56776.1| ribonucleotid reductase, small subunit [Suid herpesvirus 1] gi|40253968|tpg|DAA02163.1| TPA_exp: small subunit of ribonucleotide reductase [Suid herpesvirus 1] gi|1090510|prf||2019240B ribonucleotide reductase:SUBUNIT=small Length = 303 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/298 (22%), Positives = 122/298 (40%), Gaps = 30/298 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ T++P+ DD K L++ E + F ++++ LV N+ ++ + Sbjct: 22 NRWLETDLPLGDD---AKDVAALSEPELEFYRFLFAFLSAADDLVNVNLG-SLSELFTQK 77 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV------PSITAKANWALQY 165 + Y + Q E VHS + I L L G+ R V +I K W Sbjct: 78 DILHYYIEQECIEVVHSRVYSAI--QLMLFRGDAAARERYVRAALRDEAIRRKVEW---- 131 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 ++ A+ + + ++ ++ EG++F + FA I L N V + Sbjct: 132 ----------LDSRVAECASVAEKYLLMILIEGIFFASSFASISYLRTHNLFVVTCQSND 181 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 +I RDE++H + + N + P Q + EA +E + P+ + Sbjct: 182 FISRDEAIHTSASCCIYNNYLGDAPRPDEARIHQ----LFAEAVEIECEFLRARAPRDSL 237 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 L+ P+ Y+++ A+R IG PLF + ++ +K NFFE R T Y Sbjct: 238 LLDLPAIISYVRYSADRLLQAIGASPLFGAPAPAADFPMALMVAEKHTNFFERRSTNY 295 >gi|332290530|ref|YP_004421382.1| ribonucleotide-diphosphate reductase subunit beta [Gallibacterium anatis UMN179] gi|330433426|gb|AEC18485.1| ribonucleotide-diphosphate reductase subunit beta [Gallibacterium anatis UMN179] Length = 376 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++S L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNQEIIKRARDISAYYDDLIRDS 165 Query: 174 -----FTTGTKDAD----QEFLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217 + GT D Q L++L + E + FY FA + M Sbjct: 166 QLYSLYGEGTYTVDGKEYQVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + ++P + +E QQ++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECQQEAYDLFVAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A+ G +GLN QY+++I N R +GL F NP PW++ Sbjct: 286 EWANYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFTTRSNPIPWIN 337 >gi|255065945|ref|ZP_05317800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sicca ATCC 29256] gi|255049856|gb|EET45320.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sicca ATCC 29256] Length = 377 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + I A+A + ++YT Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYT 165 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L + G K +E + L++ + V E + FY FA + M Sbjct: 166 QYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E Q + + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGSDDPEMAEIAVELQDECFKLFKKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ T+NP PW++ Sbjct: 286 EWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 338 >gi|269963956|ref|ZP_06178265.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi 1DA3] gi|269831299|gb|EEZ85449.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi 1DA3] Length = 377 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165 Query: 174 -----FTTG--------TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + G K + + + L+V + E + FY FA + M Sbjct: 166 NDYHRYGEGEHVLNGETVKVSLYDLKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN +IN ++ +E +Q + EA E Sbjct: 226 EGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFTFMQIAEEAKQDCFDLFKEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL + + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPMAYPEATSNPIPWIN 338 >gi|261400675|ref|ZP_05986800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria lactamica ATCC 23970] gi|269209585|gb|EEZ76040.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria lactamica ATCC 23970] Length = 377 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/294 (23%), Positives = 130/294 (44%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165 Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 Q + T + ++ L V+ E + FY FA + Sbjct: 166 QYYNLLGEGMHNVGGKLVTVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++P + E Q + + +A E Sbjct: 225 MEGNAKIIKLIARDEALHLTSTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 285 KEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 338 >gi|319638203|ref|ZP_07992966.1| ribonucleoside diphosphate reductase subunit I beta [Neisseria mucosa C102] gi|317400476|gb|EFV81134.1| ribonucleoside diphosphate reductase subunit I beta [Neisseria mucosa C102] Length = 384 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + I A+A + ++YT Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYT 172 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L + G K +E + L++ + V E + FY FA + M Sbjct: 173 QYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E Q + + +A E Sbjct: 233 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIANELQDECFNLFKKAAEQEK 292 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ T+NP PW++ Sbjct: 293 EWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 345 >gi|21959884|gb|AAM86526.1|AE013899_3 ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Yersinia pestis KIM 10] gi|45435621|gb|AAS61179.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Microtus str. 91001] Length = 391 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 64 WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 120 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ +F E +HS ++ +II ++ D +F+ Y ++ +T Sbjct: 121 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMT 180 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T ++ + +D ++ L + E + FY FA + Sbjct: 181 SYYHLLGEGTHQVNGKTVVVKLRDLKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 239 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N +++ ++P + +E QQ+ + A E Sbjct: 240 MEGNAKIIKMIARDEALHLTGTQHILNLMRLGEDDPEMAEIAEECQQQCYDLFVLAAQQE 299 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F NP PW++ Sbjct: 300 KEWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFSTRTNPIPWIN 352 >gi|61680624|pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide Reductase R2 Protein From E. Coli gi|61680625|pdb|1YFD|B Chain B, Crystal Structure Of The Y122h Mutant Of Ribonucleotide Reductase R2 Protein From E. Coli Length = 375 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS + +II ++ D +F+ Y E+ +T Sbjct: 105 ETWVETWAFSETIHSRSHTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336 >gi|304414248|ref|ZP_07395616.1| ribonucleotide reductase beta subunit [Candidatus Regiella insecticola LSR1] gi|304283462|gb|EFL91858.1| ribonucleotide reductase beta subunit [Candidatus Regiella insecticola LSR1] Length = 381 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 126/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D ++ L E+ + NL + +S+ + +A+ +S PE Sbjct: 54 WRPEEIDVSQDRTDYQK---LPPHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 110 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ +F E +HS ++ +II ++ D +F+ Y ++ +T Sbjct: 111 ETWIETWSFSETIHSRSYTHIIRNIVNDPSLIFDDIVTNEEILKRAEDISAYYDDLIKMT 170 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T ++S + T + ++ L + E + FY FA + Sbjct: 171 SYYHLLGEGTHHINSETITVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 229 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL +IN ++ ++P + KE Q + +A E Sbjct: 230 MEGNAKIIKLIARDEALHLTGTQHIINLMREGTDDPEMAEIAKECQNNCFELFKKAAEQE 289 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL FK NP PW++ Sbjct: 290 KEWATYLFRDGSMIGLNKDILCQYIEYITNIRMQAVGLALPFKIRSNPIPWIN 342 >gi|304445703|pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of E. Coli gi|304445704|pdb|2XOF|B Chain B, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of E. Coli Length = 375 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS + +II ++ D +F+ Y E+ +T Sbjct: 105 ETWVETWAFSETIHSRSXTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 223 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336 >gi|326560111|gb|EGE10501.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 46P47B1] gi|326564174|gb|EGE14410.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 12P80B1] gi|326573404|gb|EGE23372.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 101P30B1] Length = 376 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + L+ E+ + NL + +S+ + + + +S PE Sbjct: 49 WRPEEIDVSKDRIDFAE---LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D ++F + I +A+ +Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCA 165 Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 G D + ++ L++ V V E + FY FA + M Sbjct: 166 KLYDLHGEGIYQIDGQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN +IN ++ ++P + + Q+++ + A E Sbjct: 226 EGNAKIIKMIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 A+A+ G +GLN QY++FI N R IGL +F+ NP PW++ Sbjct: 286 AWANYLFKDGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWIN 337 >gi|126174279|ref|YP_001050428.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella baltica OS155] gi|125997484|gb|ABN61559.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella baltica OS155] Length = 376 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 126/291 (43%), Gaps = 24/291 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN---MYREVPS----ITAKANWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + +E+ S I A + +Q T Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILSRATDIAAYYDHLIQLT 165 Query: 167 QTLSSPSFTTGTKDADQEFL------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q T D + + + L++ + E + FY FA + M Sbjct: 166 QVFHLLGAGTHVIDGKEVIVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN I I Q ++P + E QQ++ + +A E Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILSIMQGGKDDPEMGEIAAECQQEAFDLFFKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +A G +GLN QY++FI N+R + L + NP PWM Sbjct: 286 EWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYLEITNPLPWM 336 >gi|28898709|ref|NP_798314.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio parahaemolyticus RIMD 2210633] gi|153839553|ref|ZP_01992220.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ3810] gi|260363692|ref|ZP_05776476.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus K5030] gi|260879741|ref|ZP_05892096.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AN-5034] gi|260898785|ref|ZP_05907226.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus Peru-466] gi|260901598|ref|ZP_05909993.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ4037] gi|28806927|dbj|BAC60198.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149746934|gb|EDM57922.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ3810] gi|308086689|gb|EFO36384.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus Peru-466] gi|308093260|gb|EFO42955.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AN-5034] gi|308108691|gb|EFO46231.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ4037] gi|308113401|gb|EFO50941.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus K5030] Length = 377 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 124/293 (42%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQTT 165 Query: 174 -----FTTG--------TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + G K + + + L++ + E + FY FA + M Sbjct: 166 NDYHRYGEGEHVLNGETVKVSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN +IN ++ +E +Q + EA E Sbjct: 226 EGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFSFMQIAEEAKQDCFDLFKEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL + + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEATTNPIPWIN 338 >gi|328474726|gb|EGF45531.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio parahaemolyticus 10329] Length = 377 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 124/293 (42%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQTT 165 Query: 174 -----FTTGTKDADQEFLQ--------DLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + G + E ++ L++ + E + FY FA + M Sbjct: 166 NDYHRYGEGEHVINGETVKISLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN +IN ++ +E +Q + EA E Sbjct: 226 EGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFSFMQIAEEAKQDCFDLFKEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL + + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEATTNPIPWIN 338 >gi|298368555|ref|ZP_06979873.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282558|gb|EFI24045.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 384 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + I A+A + ++YT Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYT 172 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L + G K +E + L++ + V E + FY FA + M Sbjct: 173 QYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E Q + + +A E Sbjct: 233 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIAVELQDECFKLFKKAAEQEK 292 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ T+NP PW++ Sbjct: 293 EWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 345 >gi|71065825|ref|YP_264552.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter arcticus 273-4] gi|71038810|gb|AAZ19118.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Psychrobacter arcticus 273-4] Length = 377 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 125/294 (42%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L+ E+ + NL + +S+ + + + +S PE Sbjct: 49 WRPEEVDVSRDRMDY---GNLSSHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ F E +HS ++ +II ++ D +F+ + I +A +Y Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIINDPAIVFDDIMQNEHILGRAADIAKYYDDLYYSS 165 Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 T T++ T K ++ L V+ E + FY FA + Sbjct: 166 SLYNLYGAGTHTINGKQITVDLKSLKKQLYLCLMAVNVL-EAIRFYVSFACSFAFAERKL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++I ++P + KE ++S + +A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHILNLMRIGRDDPEMVDIAKECYEESIEIFRKAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F K NP PW++ Sbjct: 285 KEWAGYLFKDGSMIGLNKDILCQYIEYITNLRMEAVGLPVAFPKSKSNPIPWIN 338 >gi|209695249|ref|YP_002263178.1| ribonucleotide-diphosphate reductase subunit beta [Aliivibrio salmonicida LFI1238] gi|208009201|emb|CAQ79455.1| ribonucleoside-diphosphate reductase 1 beta chain [Aliivibrio salmonicida LFI1238] Length = 377 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 126/293 (43%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRIDY---NNLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +I+ ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIVRNIVNDPAIIFDDIVENEEILKRAKDIAHYYDNLIQAT 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F GT + +E + L++ + E + FY FA + M Sbjct: 166 NDYHRFGEGTHTVNGEEIIVSKRELKKTLYLCLMSVNALEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P E +Q + A E Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMVNLLRTGQDDPEFVEIAAECEQDCFDLFKAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A+ G +GLN QY+++I N R +GL + T+NP PW++ Sbjct: 286 EWANYLFKDGSMIGLNKDILCQYVEYITNLRMKAVGLSGAYDGATQNPIPWIN 338 >gi|261364564|ref|ZP_05977447.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria mucosa ATCC 25996] gi|288567131|gb|EFC88691.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria mucosa ATCC 25996] Length = 384 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 133/293 (45%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + I A+A + ++YT Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYT 172 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L + G K +E + L++ + V E + FY FA + M Sbjct: 173 QYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E Q + + +A E Sbjct: 233 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGSDDPEMAEIAVELQDECFELFKKAAEQEK 292 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ T+NP PW++ Sbjct: 293 EWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 345 >gi|332093862|gb|EGI98916.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella boydii 5216-82] Length = 376 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T + ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNGKTVTVSLCELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|33519930|ref|NP_878762.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Blochmannia floridanus] gi|33504276|emb|CAD83168.1| ribonucleoside-diphosphate reductase 1 beta chain [Candidatus Blochmannia floridanus] Length = 376 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D ++S L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDISKDRIDYQS---LPNHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +II ++ +F+ I +A + ++ Y + Sbjct: 106 ETWVETWSFFETIHSRSYTHIIRNIVNHPSVIFDDIVTNKEILKRAKDISMYYDDLIKLT 165 Query: 173 SF-------------TTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANK 216 ++ TT T + E + L++ + V E + FY FA + Sbjct: 166 NYYYTLGIGKHRVNNTTITVNL-HELKKKLYLCLISVNVLEAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLWTKEF--QQKSRTMLHEATLLE 272 M G A+ ++I RDESLHLN ++N ++ ++P + Q++S + A E Sbjct: 225 MEGNAKIIRFIARDESLHLNATQHILNLMRSGSDDPEMVDISLICQEESYNLFLMAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +AH G +GLN QY+++I N R IGL+ F N PW++ Sbjct: 285 KTWAHYLFKDGSMIGLNKEILCQYIEYITNIRMQAIGLKTPFNTKTNSIPWIN 337 >gi|255928974|ref|YP_003097286.1| ribonucleotide reductase B subunit [Synechococcus phage S-RSM4] gi|255705260|emb|CAR63249.1| ribonucleotide reductase B subunit [Synechococcus phage S-RSM4] Length = 394 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 123/292 (42%), Gaps = 26/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV +Q D A ++ L D ++ + NL + +S+ +A + S PE Sbjct: 65 WRPEEVSLQKDRADYQV---LNDAQKHIFTSNLKYQILLDSVQGRGPGMAFMPYCSLPEL 121 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSP 172 + E VHS ++ +II ++ D ++F+ + I ++A Y + L + Sbjct: 122 EGAMNIWQTMEMVHSRSYTHIIKNVYADPSDVFDKILDDEKILSRAKSVTHAYDEFLRAA 181 Query: 173 SFTTGTKDADQEF---------LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANK 216 K + L DL + EG+ FY FA + G Sbjct: 182 QEWGAGKQWEHALEGVDNAIWELNDLKRKLYRAVANVYILEGIRFYVSFACSFAFGELKL 241 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK-IENPHL--WTKEFQQKSRTMLHEATLLEI 273 + G A+ I RDES H+ +++N+ K ++P + KE ++ M + E Sbjct: 242 LEGSAKIIGLIARDESQHMTITQNILNKWKEGDDPEMVQIAKEEEENVYDMFRQCVEEEK 301 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFPW 322 +A G +GLN +Y+++ ANRR IGL+ +F + NP PW Sbjct: 302 LWAEYLFKDGSIIGLNDKLLSKYVEWTANRRLKSIGLKAIFDTPVSNNPLPW 353 >gi|254361270|ref|ZP_04977413.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica PHL213] gi|153092766|gb|EDN73809.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica PHL213] Length = 376 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYAQ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + G+ D + + L++ + E + FY FA + M Sbjct: 166 QLYSLYGEGSYQVDGKTCEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIEN--PHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + N P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAYGNDDPEMAEIARECRQEAYELFLSAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 A+A G +GLN QY+++I N R +GL FK NP PW++ Sbjct: 286 AWAEYLFKDGSMIGLNRDILVQYIEYITNIRMQAVGLPLPFKARSNPIPWIN 337 >gi|261493906|ref|ZP_05990416.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495801|ref|ZP_05992236.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308535|gb|EEY09803.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310439|gb|EEY11632.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 376 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 124/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYAQ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + G+ D + + L++ + E + FY FA + M Sbjct: 166 QLYSLYGEGSYQVDGKTCEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIEN--PHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + N P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMTYGNDDPEMAEIARECRQEAYELFLSAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 A+A G +GLN QY+++I N R +GL FK NP PW++ Sbjct: 286 AWAEYLFKDGSMIGLNRDILVQYIEYITNIRMQAVGLPLPFKARSNPIPWIN 337 >gi|40889712|pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of Ribonucleotide Reductase gi|40889713|pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of Ribonucleotide Reductase Length = 375 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 131/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS +F +II ++ D +F+ Y E+ +T Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + Y FA + Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRAYVSFACSFAFAEREL 223 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336 >gi|15616797|ref|NP_240009.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681552|ref|YP_002467937.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682108|ref|YP_002468492.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471235|ref|ZP_05635234.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11134533|sp|P57275|RIR2_BUCAI RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|25285834|pir||G84950 ribonucleoside-diphosphate reductase (EC 1.17.4.1) nrdB [imported] - Buchnera sp. (strain APS) gi|10038860|dbj|BAB12895.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621841|gb|ACL29997.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624395|gb|ACL30550.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087074|gb|ADP67154.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 376 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 24/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D +++ L D+E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEIDLSRDRIDFQN---LPDNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +II ++ +F+ +I +A N ++ Y + ++ Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNCPSLVFDDIISNKNIYDRAQNISIYYDELINLT 165 Query: 173 SF----------TTGTK-DADQEFLQD-LFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 S+ G K + FL+ L++ + V E + FY FA + M Sbjct: 166 SYWHLLGEGIHLINGKKIHINLRFLKKRLYLCLISVNVLEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI----ENPHLWTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N + EN E ++++ + A E Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHILNLLSNIKNNENMEDVVLECKEEAINIFISAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 +A G +GLN QY+++I N R H IG + FK NP PW+++ Sbjct: 286 KWASYLFKSGSMLGLNKDILCQYIEYITNIRMHAIGFKMPFKKQSNPIPWIND 338 >gi|294788520|ref|ZP_06753762.1| ribonucleoside-diphosphate reductase, beta subunit [Simonsiella muelleri ATCC 29453] gi|294483397|gb|EFG31082.1| ribonucleoside-diphosphate reductase, beta subunit [Simonsiella muelleri ATCC 29453] Length = 384 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEVDLSRDRMDYAK---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ AF E +HS ++ +II ++ D +F+ + I A+A N ++YT Sbjct: 113 ETWIETWAFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYNDLIEYT 172 Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 Q +++ T ++ ++ L V+ E + FY FA + Sbjct: 173 QYFNLLGEGKHLINNKEITISLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 231 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + E + + +A E Sbjct: 232 MEGNAKIIKLIARDEALHLTSTQHMLNLMRNGTDDPEMAEIAAELHDECVALFKKAAAQE 291 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F K +NP PW++ Sbjct: 292 KEWAAYLFKDGSMIGLNKDILGQYVEYITNLRMSAVGLPQAFPKALQNPIPWIN 345 >gi|290473788|ref|YP_003466662.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus bovienii SS-2004] gi|289173095|emb|CBJ79868.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus bovienii SS-2004] Length = 376 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQ-- 164 ++ +F E +HS ++ +II ++ D +F+ + + I+ + ++ Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVANEQILKRAKDISGYYDVLIEMT 165 Query: 165 -YTQTLSSPSFTTGTKD------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 Y L ++ K+ A ++ L + E + FY FA + M Sbjct: 166 NYYHQLGEGTYNVAGKNITVSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIARECEQQCYDLFVQAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 286 EWADYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFEARSNPIPWIN 337 >gi|293395206|ref|ZP_06639492.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582] gi|291422383|gb|EFE95626.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582] Length = 376 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 127/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ +F E +HS ++ +II ++ D +F+ Y ++ +T Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEEIKKRAKDISGYYDDLIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T ++ S T + ++ L + E + FY FA + Sbjct: 166 SYYHLLGEGTHQVNGQSVTVSLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + E QQ+ + A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL FK NP PW++ Sbjct: 285 KEWAEYLFSGGSMIGLNKDILCQYVEYITNIRMQAVGLGAPFKTRSNPIPWIN 337 >gi|163784572|ref|ZP_02179421.1| ribonucleotide-diphosphate [Hydrogenivirga sp. 128-5-R1-1] gi|159880158|gb|EDP73813.1| ribonucleotide-diphosphate [Hydrogenivirga sp. 128-5-R1-1] Length = 139 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 3/136 (2%) Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEA 268 ++ KM + + ++ DESLHL GI+ I I ENP + +F + R + +A Sbjct: 2 AMKDTGKMKNVVSGVELVLIDESLHLQNGIEAILTIIEENPEIVDDIKFVENIRDTIIDA 61 Query: 269 TLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 LE+ Y + G++ E YM++IA+RR ++G +P F +NP ++ + Sbjct: 62 VELELNYLKTKFGGTTIFGVSYKELEMYMKYIADRRLEELGFDPQFNIQQNPLKFLQKE- 120 Query: 328 DLKKEKNFFETRVTEY 343 D+KK NFFE TEY Sbjct: 121 DVKKLTNFFEVSSTEY 136 >gi|238797463|ref|ZP_04640962.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia mollaretii ATCC 43969] gi|238718734|gb|EEQ10551.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia mollaretii ATCC 43969] Length = 376 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 127/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQ-- 164 ++ +F E +HS ++ +II ++ D +F+ + + I+A + ++ Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISAYYDDLIEMT 165 Query: 165 -YTQTLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Y L S K +E + L++ + E + FY FA + M Sbjct: 166 SYYHLLGEGSHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN ++ ++P + +E QQ+ + A E Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHIINLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F NP PW++ Sbjct: 286 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTRTNPIPWIN 337 >gi|332974578|gb|EGK11498.1| ribonucleotide-diphosphate reductase beta subunit [Kingella kingae ATCC 23330] Length = 384 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 129/300 (43%), Gaps = 39/300 (13%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + L D E+ + NL + +S+ + + +S PE Sbjct: 56 WRPEEVDLSRDRIDYAN---LPDHEKHIFISNLKYQTLLDSIQGRSPNVGFLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ AF E +HS ++ +II ++ D +F+ + I A+A + ++YT Sbjct: 113 ETWIETWAFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNDYIIARAEDIACYYDDLIEYT 172 Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 Q T++ T ++ ++ L V+ E + FY FA + Sbjct: 173 QYFNLLGEGKHTVNGKEITISLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 231 Query: 217 MVGIAEQYQYIMRDESLHLN----------FGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 M G A+ + I RDE+LHL G+D ++ +I E Q + + Sbjct: 232 MEGNAKIIKLIARDEALHLTSTQHMLNLMRSGVDDLDMAEI------AAELQDECFELFK 285 Query: 267 EATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A E +A G +GLN QY+++I N R +GL+ F + T+NP PW++ Sbjct: 286 KAAEQEKEWAAYLFKDGSMIGLNKDILCQYVEYITNHRMLAVGLQAAFPQATQNPIPWIN 345 >gi|9625893|ref|NP_040141.1| ribonucleotide reductase subunit 2 [Human herpesvirus 3] gi|132630|sp|P09247|RIR2_VZVD RecName: Full=Ribonucleoside-diphosphate reductase small chain; Short=R2; AltName: Full=Ribonucleotide reductase small subunit gi|259645448|sp|Q4JQV7|RIR2_VZVO RecName: Full=Ribonucleoside-diphosphate reductase small chain; Short=R2; AltName: Full=Ribonucleotide reductase small subunit gi|60007|emb|CAA27901.1| ribonucleotide reductase (small subunit) [Human herpesvirus 3 strain Dumas] gi|46981429|gb|AAT07700.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|46981500|gb|AAT07776.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|66865986|gb|AAY57634.1| ORF18 [Human herpesvirus 3] gi|66866058|gb|AAY57705.1| ORF18 [Human herpesvirus 3] gi|83721826|emb|CAI44861.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|90992817|gb|ABE03036.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|91980319|gb|ABE67126.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481816|gb|ABF21518.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481890|gb|ABF21591.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481964|gb|ABF21664.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482038|gb|ABF21737.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482112|gb|ABF21810.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482186|gb|ABF21883.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482260|gb|ABF21956.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482334|gb|ABF22029.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482408|gb|ABF22102.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482482|gb|ABF22175.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482556|gb|ABF22248.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|111184743|gb|ABH08451.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|157965778|gb|ABW06924.1| ribonucleotide reductase small subunit [Human herpesvirus 3] Length = 306 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 130/300 (43%), Gaps = 35/300 (11%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+ ++ ++DD ++ + LT+DE + + F ++++ LV N+ ++ + S Sbjct: 27 SNRWLESDFIIEDD---YQYLDCLTEDELIFYRFIFTFLSAADDLVNVNLG-SLTQLFSQ 82 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYT 166 + Y + Q E VH+ + I L + L Y V PSI K W + Sbjct: 83 KDIHHYYIEQECIEVVHARVYSQIQLMLFRGDESLRVQYVNVTINNPSIQQKVQWLEE-- 140 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY-Q 225 K D + + ++ ++ EG++F + FA I L R N + + Q+ Sbjct: 141 ------------KVRDNPSVAEKYILMILIEGIFFVSSFAAIAYL-RNNGLFVVTCQFND 187 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 I RDE++H + + N E P + + + EA +E A+ PK + Sbjct: 188 LISRDEAIHTSASCCIYNNYVPEKPAI------TRIHQLFSEAVEIECAFLKSHAPKTRL 241 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKKEKNFFETRVTEY 343 +N + QY++F A+R I + LF ++ FP + D K NFFE T Y Sbjct: 242 -VNVDAITQYVKFSADRLLSAINVPKLFNTPPPDSDFPLAFMIAD--KNTNFFERHSTSY 298 >gi|148825799|ref|YP_001290552.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittEE] gi|148715959|gb|ABQ98169.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittEE] Length = 376 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT D + + L++ + E + FY FA + M Sbjct: 166 QLYGLYGEGTYTVDGKECVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 A+A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 AWADYLFKDGSMIGLNRDILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWIN 337 >gi|311085920|gb|ADP66002.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086491|gb|ADP66572.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087626|gb|ADP67705.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 359 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 132/293 (45%), Gaps = 24/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D +++ L D+E+ + NL + +S+ + +A +S PE Sbjct: 32 WRPEEIDLSRDRIDFQN---LPDNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPEL 88 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +II ++ +F+ +I +A N ++ Y + ++ Sbjct: 89 ETWIETWSFSETIHSRSYTHIIRNIVNCPSLVFDDIISNKNIYDRAQNISIYYDELINLT 148 Query: 173 SF----------TTGTK-DADQEFLQD-LFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 S+ G K + FL+ L++ + V E + FY FA + M Sbjct: 149 SYWHLLGEGIHLINGKKIHINLRFLKKRLYLCLISVNVLEAIRFYVSFACSFAFAERELM 208 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI----ENPHLWTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N + EN E ++++ + A E Sbjct: 209 EGNAKIIRLIARDEALHLTGTQHILNLLSNIKNNENMEDVVLECKEEAINIFISAAQQEK 268 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 +A G +GLN QY+++I N R H IG + FK NP PW+++ Sbjct: 269 KWASYLFKSGSMLGLNKDILCQYIEYITNIRMHAIGFKMPFKKQSNPIPWIND 321 >gi|145634465|ref|ZP_01790175.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus influenzae PittAA] gi|229845068|ref|ZP_04465204.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 6P18H1] gi|229846892|ref|ZP_04466999.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 7P49H1] gi|145268445|gb|EDK08439.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus influenzae PittAA] gi|229810381|gb|EEP46100.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 7P49H1] gi|229812040|gb|EEP47733.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 6P18H1] Length = 376 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 124/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 ++ GT D + + L++ + E + FY FA + M Sbjct: 166 QLYGLYSEGTYTVDGKECVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + L +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDLEMAEIAEECKQEAYDLFVAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 A+A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 AWADYLFKDGSMIGLNRDILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWIN 337 >gi|117619492|ref|YP_856857.1| ribonucleotide-diphosphate reductase subunit beta [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560899|gb|ABK37847.1| ribonucleoside-diphosphate reductase, beta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 377 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSHDRIDFQA---LPPHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ ++F+ Y ++ T Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNTPAQVFDDIVTNEQILKRAGSISHFYDDLIEAT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 A N + T ++ T ++ ++ L + E + FY FA + Sbjct: 166 ALYNLHGEGTHRVAGRDVTITLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + E +Q + EA + E Sbjct: 225 MEGNAKIIKMIARDEALHLTGTQHMLNLMRSGQDDPEMAEIAAECEQACFELFKEAAIQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R + +GL+P F +NP PW++ Sbjct: 285 KEWAEYLFQDGSMIGLNKDILCQYVEYITNLRMNAVGLQPAFAGAKQNPIPWIN 338 >gi|145633337|ref|ZP_01789068.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus influenzae 3655] gi|144986183|gb|EDJ92773.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus influenzae 3655] Length = 376 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT D + + L++ + E + FY FA + M Sbjct: 166 QLYGLYGEGTYTVDGKKCVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 A+A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 AWADYLFKDGSMIGLNRDILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWIN 337 >gi|59711808|ref|YP_204584.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio fischeri ES114] gi|197336251|ref|YP_002156001.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio fischeri MJ11] gi|59479909|gb|AAW85696.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Vibrio fischeri ES114] gi|197317741|gb|ACH67188.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio fischeri MJ11] Length = 377 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSGDRIDY---NNLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ + +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNNPSVIFDDIVENEEILKRAKDIAHYYDNLIQAT 165 Query: 174 -----FTTGT--------KDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F GT + +E + L++ + E + FY FA + M Sbjct: 166 NDYHRFGEGTHVLNGQEITISKRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDESLHL ++N ++ ++P E +Q+ + A E Sbjct: 226 EGNAKIIKLIARDESLHLTSTQHMLNLLRTGQDDPEFVEIAAECEQECFDLFKAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A+ G +GLN QY+++I N R +GL ++ T+NP PW++ Sbjct: 286 QWANYLFKDGSMIGLNKDILCQYVEYITNLRMKAVGLNSAYEGATQNPIPWIN 338 >gi|9629745|ref|NP_045237.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 4] gi|2605963|gb|AAC59535.1| 20 [Equid herpesvirus 4] Length = 320 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/299 (23%), Positives = 127/299 (42%), Gaps = 30/299 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109 N W+ T++P+ DDL K L ER + F ++++ LV N+ + A++ + Sbjct: 39 NRWLDTDLPISDDL---KDVAKLAPAEREFYRFLFAFLSAADDLVNLNLGDLSALF---T 92 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + Y + Q E HS + I L L + R V S+ L+ + Sbjct: 93 QKDILHYYIEQESIEVTHSRVYSAI--QLMLFGNDATARARYVASVVKDVAIDLKVSWL- 149 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 K + + + + ++ ++ EG++F + FA I L N V + I R Sbjct: 150 -------QAKVRECKSVAEKYILMILIEGVFFASSFASIAYLRTHNLFVVTCQSNDLISR 202 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH----EATLLEIAYAHETMPKGFV 285 DE++H N + N + F++ + T ++ EA +E + PK Sbjct: 203 DEAIHTNASCCIYNN--------YLGGFEKPAPTRIYALFSEAVNIECEFLLSHAPKSTH 254 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 L+ + Y+++ A+R +IGL PLF + P + + ++K NFFE R T Y Sbjct: 255 LLDIEAIICYVRYSADRLLGEIGLSPLFNAPKPPPSFPLAFMTVEKHTNFFERRSTAYS 313 >gi|27366311|ref|NP_761839.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio vulnificus CMCP6] gi|37679427|ref|NP_934036.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio vulnificus YJ016] gi|320156821|ref|YP_004189200.1| ribonucleotide reductase of class Ia (aerobic), subunit beta [Vibrio vulnificus MO6-24/O] gi|27362512|gb|AAO11366.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Vibrio vulnificus CMCP6] gi|37198171|dbj|BAC94007.1| ribonucleotide reductase, beta subunit [Vibrio vulnificus YJ016] gi|319932133|gb|ADV86997.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Vibrio vulnificus MO6-24/O] Length = 377 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 124/293 (42%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQLT 165 Query: 174 -----FTTG--------TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F G K + E + L++ + E + FY FA + M Sbjct: 166 NDYHRFGEGEHVVNGETIKVSLYELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN +IN ++ +E +Q+ + EA E Sbjct: 226 EGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFSFMQIAEEAKQQCFDLFKEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLPVAYPNATSNPIPWIN 338 >gi|332306884|ref|YP_004434735.1| Ribonucleoside-diphosphate reductase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174213|gb|AEE23467.1| Ribonucleoside-diphosphate reductase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 376 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 74/304 (24%), Positives = 126/304 (41%), Gaps = 40/304 (13%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ L++ E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSKDRVDFQK---LSESEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 + +F E +HS ++ +I+ +L D +F E I +A + + YT Sbjct: 106 ETWTETWSFFETIHSRSYTHILRNLFGDPSSIFADIVENEQIKKRAADISKYYDDLIFYT 165 Query: 167 QTLSSPSFTTGTKDADQEFLQ------DLFVF---YVVFEGMWFYTGFAQILSLGRANKM 217 Q + T + ++ + LF+ E + FY FA + M Sbjct: 166 QLWQTLGEGTHNINGEEHVVTMRSLKVKLFLCMNSVNALEAIRFYVSFACTFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK------------EFQQKSRTML 265 G ++ + I RDE+LHL ++N LW K E++Q++ + Sbjct: 226 EGNSKIIRLISRDENLHLTSTQHILN--------LWAKGKDDPEMAEIAIEYKQQATDIF 277 Query: 266 HEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A E +A G +GLN QY++FIAN R IGL F NP PWM+ Sbjct: 278 LDAVNQEKEWAEYLFQNGSMIGLNKDILCQYVEFIANHRMSAIGLGQPFDIKNNPLPWMN 337 Query: 325 EVID 328 ++ Sbjct: 338 NYLN 341 >gi|16273547|ref|NP_439802.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae Rd KW20] gi|68250262|ref|YP_249374.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 86-028NP] gi|145629252|ref|ZP_01785051.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 22.1-21] gi|145631490|ref|ZP_01787259.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae R3021] gi|145639184|ref|ZP_01794791.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittII] gi|145641092|ref|ZP_01796673.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae R3021] gi|260581255|ref|ZP_05849073.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae RdAW] gi|260582634|ref|ZP_05850423.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae NT127] gi|319776092|ref|YP_004138580.1| ribonucleoside-diphosphate reductase subunit beta [Haemophilus influenzae F3047] gi|319896901|ref|YP_004135096.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus influenzae F3031] gi|329123256|ref|ZP_08251824.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus aegyptius ATCC 11116] gi|1172943|sp|P43755|RIR2_HAEIN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|1574510|gb|AAC23306.1| ribonucleoside diphosphate reductase, beta chain (nrdB) [Haemophilus influenzae Rd KW20] gi|68058461|gb|AAX88714.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus influenzae 86-028NP] gi|144978755|gb|EDJ88478.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 22.1-21] gi|144982920|gb|EDJ90433.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae R3021] gi|145271746|gb|EDK11656.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittII] gi|145274253|gb|EDK14118.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 22.4-21] gi|260092082|gb|EEW76027.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae RdAW] gi|260094306|gb|EEW78205.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae NT127] gi|301170418|emb|CBW30024.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Haemophilus influenzae 10810] gi|309750762|gb|ADO80746.1| Ribonucleoside diphosphate reductase 1, beta subunit [Haemophilus influenzae R2866] gi|309972945|gb|ADO96146.1| Ribonucleoside diphosphate reductase 1, beta subunit [Haemophilus influenzae R2846] gi|317432405|emb|CBY80760.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus influenzae F3031] gi|317450683|emb|CBY86903.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus influenzae F3047] gi|327471465|gb|EGF16913.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus aegyptius ATCC 11116] Length = 376 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT D + + L++ + E + FY FA + M Sbjct: 166 QLYGLYGEGTYTVDGKECVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 A+A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 AWADYLFKDGSMIGLNRDILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWIN 337 >gi|290508492|ref|ZP_06547863.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp. 1_1_55] gi|289777886|gb|EFD85883.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp. 1_1_55] Length = 405 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 78 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 134 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ AF E +HS ++ +II ++ D +F+ I +A Y Sbjct: 135 ETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMT 194 Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 T T++ + T ++ ++ L + E + FY FA + Sbjct: 195 SYWHLLGEGTHTVNGKTVTVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 253 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + A E Sbjct: 254 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVLAAQQE 313 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 314 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 366 >gi|1710396|sp|P50644|RIR2_EHV4 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|515833|emb|CAA53101.1| ribonucleoside-diphosphate reductase [Equid herpesvirus 4] Length = 320 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 71/299 (23%), Positives = 127/299 (42%), Gaps = 30/299 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109 N W+ T++P+ DDL K L ER + F ++++ LV N+ + A++ + Sbjct: 39 NRWLDTDLPISDDL---KDVAKLAPAEREFYRFLFAFLSAADDLVNLNLGDLSALF---T 92 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + Y + Q E HS + I L L + R V S+ L+ + Sbjct: 93 QKDILHYYIEQESIEVTHSRVYSAI--QLMLFGNDATARARYVASVVKDVAIDLKVSWL- 149 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 K + + + + ++ ++ EG++F + FA I L N V + I R Sbjct: 150 -------QAKVRECKSVAEKYILMILIEGVFFASSFASIAYLRTHNLFVVTCQSNDLISR 202 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH----EATLLEIAYAHETMPKGFV 285 DE++H N + N + F++ + T ++ EA +E + PK Sbjct: 203 DEAIHTNASCCIYNN--------YLGGFEKPAPTRIYALFSEAVNIECEFLLSHAPKSSH 254 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 L+ + Y+++ A+R +IGL PLF + P + + ++K NFFE R T Y Sbjct: 255 LLDIEAIICYVRYSADRLLGEIGLSPLFNAPKPPPSFPLAFMTVEKHTNFFERRSTAYS 313 >gi|238895770|ref|YP_002920506.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|238548088|dbj|BAH64439.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 396 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 69 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 125 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ AF E +HS ++ +II ++ D +F+ I +A Y Sbjct: 126 ETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMT 185 Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 T T++ + T ++ ++ L + E + FY FA + Sbjct: 186 SYWHLLGEGTHTVNGKTVTVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 244 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + A E Sbjct: 245 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVLAAQQE 304 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 305 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 357 >gi|238761950|ref|ZP_04622923.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia kristensenii ATCC 33638] gi|238699678|gb|EEP92422.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia kristensenii ATCC 33638] Length = 400 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 127/294 (43%), Gaps = 28/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 73 WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 129 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ +F E +HS ++ +II ++ D +F+ Y ++ +T Sbjct: 130 ETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISGYYDDLIEMT 189 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV-VFEGMWFYTGFAQILSLGRAN 215 + + + T ++ + ++ ++ L V V E + FY FA + Sbjct: 190 SYYHLLGEGTHQVNGKTVVVNLRELKKQLY--LCVMSVNALEAIRFYVSFACSFAFAERE 247 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLL 271 M G A+ + I RDE+LHL +IN ++ ++P + +E QQ+ + A Sbjct: 248 LMEGNAKIIKMIARDEALHLTGTQHIINLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQ 307 Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 E +A G +GLN QY+++I N R +GL F NP PW++ Sbjct: 308 EKEWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTRTNPIPWIN 361 >gi|238021387|ref|ZP_04601813.1| hypothetical protein GCWU000324_01286 [Kingella oralis ATCC 51147] gi|237868367|gb|EEP69373.1| hypothetical protein GCWU000324_01286 [Kingella oralis ATCC 51147] Length = 384 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 74/294 (25%), Positives = 133/294 (45%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + L + E+ + NL + +S+ + + + +S PE Sbjct: 56 WRPEEVDLSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVGLLPLVSLPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + I A+A + ++YT Sbjct: 113 ETWIETWSFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYT 172 Query: 167 Q---TLSSPSFTTGTKD---ADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L K +++E + L++ + V E + FY FA + M Sbjct: 173 QYFNLLGVGEHRVNGKTIVVSERELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLWTK---EFQQKSRTMLHEATLLE 272 G A+ + I RDE+LHL ++N ++ E W + E Q + + +A E Sbjct: 233 EGNAKIIKLIARDEALHLTSTQHMLNLMRGGAEGAE-WAEIAAELQNECFELFKKAAEQE 291 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+P F K T+NP PW++ Sbjct: 292 KEWAEYLFKDGSMIGLNKDILCQYVEYITNARMLAVGLQPAFEKATQNPIPWIN 345 >gi|152971181|ref|YP_001336290.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206577425|ref|YP_002237361.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] gi|262043285|ref|ZP_06016416.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934289|ref|YP_003438348.1| ribonucleotide reductase [Klebsiella variicola At-22] gi|330000612|ref|ZP_08303755.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] gi|150956030|gb|ABR78060.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206566483|gb|ACI08259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] gi|259039384|gb|EEW40524.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288889018|gb|ADC57336.1| ribonucleotide reductase [Klebsiella variicola At-22] gi|328537954|gb|EGF64133.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] Length = 376 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 127/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ AF E +HS ++ +II ++ D +F+ I +A Y Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMT 165 Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 T T++ + T ++ ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHTVNGKTVTVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVLAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|315126539|ref|YP_004068542.1| ribonucleotide-diphosphate reductase subunit beta [Pseudoalteromonas sp. SM9913] gi|315015053|gb|ADT68391.1| ribonucleotide-diphosphate reductase subunit beta [Pseudoalteromonas sp. SM9913] Length = 376 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 129/292 (44%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSKDRLDFQA---LPDHEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ +F+ I+ +A+ Y L + Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISERADAVTTYYDDLINSV 165 Query: 174 -----FTTGTKDADQE-FLQDLF----VFYV------VFEGMWFYTGFAQILSLGRANKM 217 + G D + E + +LF Y+ + E + FY FA + M Sbjct: 166 SLYNLYGEGKHDINGETVVVNLFELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLW--TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL+ ++N Q ++P + + ++++ M +A E Sbjct: 226 EGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQCREEAIKMFVDAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R IGL F NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGLPAQFDNNSNPIPWIN 337 >gi|258620211|ref|ZP_05715250.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM573] gi|258587569|gb|EEW12279.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM573] Length = 381 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 123/293 (41%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 53 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 109 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 110 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLT 169 Query: 174 -----FTTGTKDADQEF----LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217 F G + E ++DL + E + FY FA + M Sbjct: 170 NDYHRFGEGQHQINGETVNVSMRDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 229 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN ++ +E +Q+S + +A E Sbjct: 230 EGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEK 289 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GLEP + NP PW++ Sbjct: 290 EWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWIN 342 >gi|262165506|ref|ZP_06033243.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus VM223] gi|262025222|gb|EEY43890.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus VM223] Length = 377 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 123/293 (41%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLT 165 Query: 174 -----FTTGTKDADQEF----LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217 F G + E ++DL + E + FY FA + M Sbjct: 166 NDYHRFGEGQHQINGETVNISMRDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN ++ +E +Q+S + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GLEP + NP PW++ Sbjct: 286 EWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWIN 338 >gi|262171721|ref|ZP_06039399.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus MB-451] gi|261892797|gb|EEY38783.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus MB-451] Length = 377 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 123/293 (41%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLT 165 Query: 174 -----FTTGTKDADQEF----LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217 F G + E ++DL + E + FY FA + M Sbjct: 166 NDYHRFGEGQHQINGETVNVSMRDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN ++ +E +Q+S + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GLEP + NP PW++ Sbjct: 286 EWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWIN 338 >gi|258624428|ref|ZP_05719375.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM603] gi|258583275|gb|EEW08077.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM603] Length = 381 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 123/293 (41%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 53 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 109 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 110 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLT 169 Query: 174 -----FTTGTKDADQEF----LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217 F G + E ++DL + E + FY FA + M Sbjct: 170 NDYHRFGEGQHQINGETVNVSMRDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 229 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN ++ +E +Q+S + +A E Sbjct: 230 EGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEK 289 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GLEP + NP PW++ Sbjct: 290 EWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWIN 342 >gi|117920413|ref|YP_869605.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. ANA-3] gi|117612745|gb|ABK48199.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. ANA-3] Length = 391 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 24/291 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 64 WRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 120 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + R I + ++ T Sbjct: 121 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQEILRRATDIAEYYDHLIKLT 180 Query: 167 QTLSSPSFTTGTKDAD------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q T D + + + L++ + E + FY FA + M Sbjct: 181 QVYHLLGEGTHVIDGEPIEVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM 240 Query: 218 VGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN I I Q ++P + E QQ++ + +A E Sbjct: 241 EGNAKIIRLIARDEALHLNSTQHILTIMQGGKDDPEMAEIAAECQQEAYNLFLKAAEQEK 300 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +A G +GLN QY+++I N+R + L + NP PWM Sbjct: 301 EWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPLPYAELSNPLPWM 351 >gi|52425023|ref|YP_088160.1| ribonucleotide-diphosphate reductase subunit beta [Mannheimia succiniciproducens MBEL55E] gi|52307075|gb|AAU37575.1| NrdF protein [Mannheimia succiniciproducens MBEL55E] Length = 376 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVAQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEIIKRAKDISAYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F GT + + + L++ + E + FY FA + M Sbjct: 166 QLYNLFGEGTYKVEGKECKVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 A+A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 AWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWIN 337 >gi|182682906|ref|YP_001837030.1| putative aerobic ribonucleoside diphosphate reductase, small subunit [Enterobacteria phage EPS7] gi|182630618|gb|ACB97550.1| putative aerobic ribonucleoside diphosphate reductase, small subunit [Enterobacteria phage EPS7] Length = 381 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 72/298 (24%), Positives = 121/298 (40%), Gaps = 27/298 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W TE+ ++ D W + L D + + NL + ++S ++ AI +S PE Sbjct: 47 WTETEISLEADKKQWPN---LPRDIQEITLLNLAWQTQTDSFISRAPEAAIMPLVSRPEL 103 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL---------- 163 L + ++ E +HS + II ++ D E + + A+ ++ Sbjct: 104 EGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAFARIADSVELFDELYLLG 163 Query: 164 QY---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 QY T F ++ + L F Y + E M FY FA +L Sbjct: 164 QYFLAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGL-EAMQFYASFACTFALAEN 222 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 + + GIA+ Q I +DE+LH +I + + E K+ T L + EI Sbjct: 223 DILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVDEALAKAPTQLLKTLKTEIE 282 Query: 275 YAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFKYTENPFPWMSEVID 328 + H + +GLNA E+Y+ F+ IG+E L T+NP PW+ +D Sbjct: 283 WGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVEWPSHLPVITKNPIPWIMNWLD 340 >gi|295098106|emb|CBK87196.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 420 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 93 WRPEEVDVSRDRIDFQA---LPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPEL 149 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 150 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMT 209 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T ++ + T + ++ L + E + FY FA + Sbjct: 210 SYWHLLGEGTHNVNGKTVTVNLRTLKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 268 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 269 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAAIAEECKQECYDLFVQAAQQE 328 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 329 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 381 >gi|15602584|ref|NP_245656.1| ribonucleotide-diphosphate reductase subunit beta [Pasteurella multocida subsp. multocida str. Pm70] gi|12721013|gb|AAK02803.1| NrdB [Pasteurella multocida subsp. multocida str. Pm70] Length = 376 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 72/295 (24%), Positives = 126/295 (42%), Gaps = 30/295 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSVIFDDIVTNEEIIKRAKDISAYYDDLIRDS 165 Query: 174 -----FTTGTKDADQEFLQDLFV--------FYV------VFEGMWFYTGFAQILSLGRA 214 + GT + D QD V Y+ E + FY FA + Sbjct: 166 QLYTLYGEGTYNVDG---QDCVVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAER 222 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATL 270 M G A+ ++I RDE+LHL ++N + ++P + +E +Q++ + A Sbjct: 223 KLMEGNAKIIKFIARDEALHLTGTQHILNIMASGQDDPEMAEIVEECKQEAYDLFVAAAE 282 Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 E +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 283 QEKEWADYLFKDGSMIGLNRDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWIN 337 >gi|251790602|ref|YP_003005323.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya zeae Ech1591] gi|247539223|gb|ACT07844.1| ribonucleotide reductase [Dickeya zeae Ech1591] Length = 376 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ GL + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQ---GLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISGFYDELIELT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T ++ + T + ++ L + E + FY FA + Sbjct: 166 SYYHLLGEGTHQVNGKTVTINLYELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLW--TKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E QQ+ + A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRAGQDDPEMAQVAEECQQQCYDLFVLAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETRTNPIPWIN 337 >gi|84386981|ref|ZP_00990005.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio splendidus 12B01] gi|86148466|ref|ZP_01066756.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] gi|218709927|ref|YP_002417548.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio splendidus LGP32] gi|84378271|gb|EAP95130.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio splendidus 12B01] gi|85833763|gb|EAQ51931.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] gi|218322946|emb|CAV19123.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio splendidus LGP32] Length = 377 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 73/293 (24%), Positives = 126/293 (43%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQ----T 168 ++ +F E +HS ++ +II ++ D G +F+ E I +A + A Y T Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGVVFDDIVENEEILKRAKDIAFYYDDLIKLT 165 Query: 169 LSSPSFTTGTKDADQE--------FLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + G + + E + L+V + E + FY FA + M Sbjct: 166 ADYHRYGEGNHNINGEDVKISLHDLKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN ++ +E +Q+ + EA E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFEFMQIAEECKQECFDLFKEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL + + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLGTAYPEATSNPIPWIN 338 >gi|330004285|ref|ZP_08304843.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] gi|328536657|gb|EGF62979.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] Length = 380 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 70/296 (23%), Positives = 128/296 (43%), Gaps = 29/296 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + +K L D ER + NL + +S+ + + + S PE Sbjct: 49 WRPEEVDISQDRIDYMTK--LADHERHIFNSNLRYQTLLDSVQGRSPNVTLLPLASIPEL 106 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 ++ AF E +HS ++ +II + D E+F+ + S++A+ + Q Sbjct: 107 ETWIETWAFSETIHSRSYTHIIRGMVDDPSEIFDGIVTDEQIISRASSVSAEYDKLYQMV 166 Query: 167 -----------QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 + L + F ++ + L V E + FY FA + G Sbjct: 167 CAREHLGEDEFERLYASEFDGKPYPMQRQLFRTL-VSVNALEAIRFYVSFACTFAFGERK 225 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA- 274 + G A+ + I RDE+LH ++ ++ L K+ ++ +++ T+L++A Sbjct: 226 LLEGNAKIMRLIARDEALHCEGTERMLRNMRNGREGLLWKQIAEEEEPFVYQ-TMLDVAE 284 Query: 275 ----YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLNA +QY+++ N ++ L PLF T +P PWM+ Sbjct: 285 QEMRWADYLFKDGSMIGLNAKILKQYVKYRTNLAMKRLHLNPLFDDVTFDPLPWMN 340 >gi|153835812|ref|ZP_01988479.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio harveyi HY01] gi|148867435|gb|EDL66832.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio harveyi HY01] Length = 377 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 125/293 (42%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQAT 165 Query: 174 -----FTTG--------TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + G K + + + L++ + E + FY FA + M Sbjct: 166 NDYHRYGEGEHVLNGETVKVSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN +IN ++ +E +Q+ + EA E Sbjct: 226 EGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFSFMQIAEEAKQECFDLFKEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL + + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEATSNPIPWIN 338 >gi|42543287|pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH Ferrous Ions At Neutral Ph gi|42543288|pdb|1PJ0|B Chain B, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH Ferrous Ions At Neutral Ph gi|42543289|pdb|1PJ1|A Chain A, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS Ions At Ph 5 gi|42543290|pdb|1PJ1|B Chain B, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS Ions At Ph 5 Length = 375 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 130/291 (44%), Gaps = 26/291 (8%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P EV + D +++ L + E+ + NL + ES+ + +A+ +S PE Sbjct: 50 PEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELET 106 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSITAK 158 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T+ Sbjct: 107 WVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSY 166 Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 + + T T++ + T ++ ++ L + E + FY FA + M Sbjct: 167 WHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELME 225 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIA 274 G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 226 GNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKD 285 Query: 275 YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F NP PW++ Sbjct: 286 WADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336 >gi|271499642|ref|YP_003332667.1| ribonucleotide reductase [Dickeya dadantii Ech586] gi|270343197|gb|ACZ75962.1| ribonucleotide reductase [Dickeya dadantii Ech586] Length = 376 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 129/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISGFYDELIELT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T ++S + T + ++ L + E + FY FA + Sbjct: 166 SYYHLLGEGTHQINSKTVTVNLYELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E QQ+ + A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRAGQDDPEMAQIAEECQQQCYDLFVLAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETRTNPIPWIN 337 >gi|193062401|ref|ZP_03043496.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E22] gi|192932067|gb|EDV84666.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E22] Length = 393 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 131/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 66 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 122 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 123 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 182 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + FY FA + Sbjct: 183 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 241 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E + + + +A E Sbjct: 242 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKLECYDLFVQAAQQE 301 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 302 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 354 >gi|288549884|ref|ZP_06390831.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter cancerogenus ATCC 35316] gi|288317051|gb|EFC55989.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter cancerogenus ATCC 35316] Length = 420 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 93 WRPEEVDVSRDRIDFQA---LPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPEL 149 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 150 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMT 209 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T ++ + T + ++ L + E + FY FA + Sbjct: 210 SYWHLLGEGTHNVNGRTVTVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 268 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 269 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGTDDPEMAAIAEECKQECYDLFVQAAQQE 328 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 329 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 381 >gi|125745092|ref|YP_001033969.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 2] gi|327488446|sp|Q77MS0|RIR2_GAHVM RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|7673151|gb|AAF66775.1|AF147806_39 ribonucleotide reductase small subunit [Gallid herpesvirus 2] gi|10180745|gb|AAG14233.1|AF243438_48 UL40 ribonucleotide reductase small subunit-like protein [Gallid herpesvirus 2] gi|104304005|gb|ABF72280.1| HSV-1 UL40-like protein [Gallid herpesvirus 2] gi|148806369|gb|ABR13125.1| UL40 [Gallid herpesvirus 2] gi|194346388|gb|ACF49570.1| UL40 [synthetic construct] gi|194750382|gb|ACF94859.1| UL40 [Gallid herpesvirus 2] gi|237626230|gb|ACR02753.1| UL40 [synthetic construct] gi|237626404|gb|ACR02926.1| UL40 [synthetic construct] Length = 343 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 68/299 (22%), Positives = 123/299 (41%), Gaps = 31/299 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109 N W TE + DDL + + LT++ER + F ++++ LV NI +L ++ S Sbjct: 63 NRWTETEFVISDDL---RDVSMLTEEERYFYRFLFTFLSAADDLVNLNIDNLLGLF---S 116 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 + Y Q EAVHS + I L L E P+I +K +W + Sbjct: 117 QKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAIQSKLDWLNKR 176 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 SS + + ++ ++ EG++F FA I L N V + Sbjct: 177 VIECSS--------------IAEKYILMILIEGIFFSASFAAIAYLRINNLFVVTCQINN 222 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 I RDE++H+ + +N + K + + + EA +E A+ P+ Sbjct: 223 LISRDEAIHVEASCCIF-----KNYLMGPKPSIGRVQELFKEAVQIECAFLRTAAPRNSQ 277 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 L+ + Y+++ A+R ++ + P++ + + ++ NFFE R T Y Sbjct: 278 LLDVEAICSYVRYSADRLLKELDMPPIYNEPKPTADFPLALMTASNNTNFFERRNTAYS 336 >gi|325171172|ref|YP_004251147.1| ribonucleoside diphosphate reductase, beta chain [Vibrio phage ICP1] gi|323512567|gb|ADX88022.1| ribonucleoside diphosphate reductase, beta chain [Vibrio phage ICP1] gi|323513935|gb|ADX89384.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2001_A] gi|323514163|gb|ADX89611.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2004_A] Length = 450 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 132/289 (45%), Gaps = 19/289 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D ++S + T D +MIK L + ++SL + +IV ++N + Sbjct: 52 WSEDEIRLHQDRMDFESVDQSTYD--VMIK-TLSWQYEADSLASRSIVTLFAPFITNSDL 108 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLS 170 Q +LR + EA+HS T+ II + ++F ++V + K A +TL Sbjct: 109 SQMMLRWSDNEALHSTTYSEIIRQCLKNPDDIFEEITSNKDVTERSYKIAEAFSKLKTLG 168 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVV----FEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + +T + ++ ++++ + +V E M F FA +L +G+A Q Sbjct: 169 A-RYTLSKESVSEKEIREVILKTIVSLYCLEQMEFMASFACTFALAEREIFLGVASLVQK 227 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ---KSRTMLHEATLLEIAYAHETMPKG 283 IM DE++H +IN + +W K F+ + ++ E++++ +G Sbjct: 228 IMIDETIHTRMDEAIINILL--GDEVWLKTFEDIKPDIKEIVDSVYKQELSWSEYIFSEG 285 Query: 284 --FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDL 329 VGLN ++++Q+ + ++G+E P NP PWM +D+ Sbjct: 286 RSIVGLNTSLLKEWVQYKSQVVYKKLGIEQPFEDVINNPLPWMENWLDI 334 >gi|148978906|ref|ZP_01815226.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales bacterium SWAT-3] gi|145962104|gb|EDK27390.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales bacterium SWAT-3] Length = 377 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 125/293 (42%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQ----T 168 ++ +F E +HS ++ +II ++ D G +F+ E I +A + A Y T Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEEILKRAKDIAFYYDDLIKLT 165 Query: 169 LSSPSFTTGTKDADQE----FLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217 + G + + E L DL + E + FY FA + M Sbjct: 166 ADYHRYGEGNHNINGEDVKISLHDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN ++ +E +Q+ + EA E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFAFMQIAEECKQECFDLFKEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL + + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLGTAYPEATSNPIPWIN 338 >gi|323512793|gb|ADX88247.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2006_D] gi|323513021|gb|ADX88474.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2006_C] gi|323513246|gb|ADX88698.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2006_B] gi|323513473|gb|ADX88924.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2006_A] gi|323513704|gb|ADX89154.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2005_A] Length = 450 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 68/289 (23%), Positives = 132/289 (45%), Gaps = 19/289 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D ++S + T D +MIK L + ++SL + +IV ++N + Sbjct: 52 WSEDEIRLHQDRMDFESVDQSTYD--VMIK-TLSWQYEADSLASRSIVTLFAPFITNSDL 108 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLS 170 Q +LR + EA+HS T+ II + ++F ++V + K A +TL Sbjct: 109 SQMMLRWSDNEALHSTTYSEIIRQCLKNPDDIFEEITSNKDVTERSYKIAEAFSKLKTLG 168 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVV----FEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + +T + ++ ++++ + +V E M F FA +L +G+A Q Sbjct: 169 A-RYTLSKESVSEKEIREVILKTIVSLYCLEQMEFMASFACTFALAEREIFLGVASLVQK 227 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ---KSRTMLHEATLLEIAYAHETMPKG 283 IM DE++H +IN + +W K F+ + ++ E++++ +G Sbjct: 228 IMIDETIHTRMDEAIINILL--GDEVWLKTFEDIKPDIKEIVDSVYKQELSWSEYIFSEG 285 Query: 284 --FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDL 329 VGLN ++++Q+ + ++G+E P NP PWM +D+ Sbjct: 286 RSIVGLNTSLLKEWVQYKSQVVYKKLGIEQPFEDVINNPLPWMENWLDI 334 >gi|262274472|ref|ZP_06052283.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Grimontia hollisae CIP 101886] gi|262221035|gb|EEY72349.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Grimontia hollisae CIP 101886] Length = 360 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 130/293 (44%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + +D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 32 WRPEEVDVSNDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 88 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---S 170 ++ +F E +HS ++ +II ++ + +F+ I +AN Y L + Sbjct: 89 ETWIETWSFSETIHSRSYTHIIRNIVTNPSLVFDDIVVNEHIIKRANDIAGYYDDLIQAT 148 Query: 171 SPSFTTGTKD----------ADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 S G + + +E + L++ + E + FY FA + M Sbjct: 149 SDYHRLGEGEHTVNGQTVVVSLRELKKKLYICLMSVNALEAIRFYVSFACSFAFAERELM 208 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + KE +Q + A E Sbjct: 209 EGNAKIIKLIARDEALHLTSTQHMLNILRSGDDDPEMAEIAKECEQVCFDLFKNAAEQEK 268 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL+P ++ +NP PW++ Sbjct: 269 EWAEYLFKDGSMIGLNKDILCQYVEYITNLRMAAVGLKPAYQGANQNPIPWIN 321 >gi|93005945|ref|YP_580382.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter cryohalolentis K5] gi|92393623|gb|ABE74898.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Psychrobacter cryohalolentis K5] Length = 377 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 70/294 (23%), Positives = 126/294 (42%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L+ E+ + NL + +S+ + + + +S PE Sbjct: 49 WRPEEVDVSKDRMDF---GNLSSHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ F E +HS ++ +II ++ D +F+ + I +A +Y Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIINDPAIVFDDIMQNEHILGRAADIAKYYDDLYYSS 165 Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 T T++ T K ++ L V+ E + FY FA + Sbjct: 166 SLYNLYGAGTHTINGKQITIDLKSLKKQLYLCLMAVNVL-EAIRFYVSFACSFAFAERKL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++I ++P + KE ++S + +A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHILNLMRIGRDDPEMVDIAKECYEESIEIFRKAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMS 324 +A G +GLN QY+++I N R +GL F ++ NP PW++ Sbjct: 285 KEWAGYLFKDGSMIGLNKDILCQYIEYITNLRMEAVGLPVAFPNSKSNPIPWIN 338 >gi|157879968|pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein R2 F208y From Escherichia Coli Ribonucleotide Reductase And Crystal Structure Of The Dopa-208 Protein gi|157879969|pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein R2 F208y From Escherichia Coli Ribonucleotide Reductase And Crystal Structure Of The Dopa-208 Protein Length = 375 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 105 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + Y FA + Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRXYVSFACSFAFAEREL 223 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWIN 336 >gi|124487872|gb|ABN12019.1| putative ribonucleotide reductase R2 subunit [Maconellicoccus hirsutus] Length = 249 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 26/233 (11%) Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151 +V +N+V + + PE R + Q +HS + +I SL D E +FN Sbjct: 1 IVNDNLVKRFSQEVQVPEARAFFGFQISNAGIHSEMYSVLIESLIKDANEKNLIFNTIET 60 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL-FVFYVVFEGMWFYTGFAQILS 210 VP + K +W L+ + AD L V + EG++F G A I Sbjct: 61 VPCVKKKKDWVLR--------------RIADDRVTFPLKVVAFATVEGIFFAGGAAAIFW 106 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L M G+ + I + ESL+ +F + ++ ++ P + ++ ++ EA + Sbjct: 107 LQEKGVMPGLTLSNELIRKGESLYTDFACLLFKRL-VQRPSV------EEITEIIREAVI 159 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +E ++ + +P +G++ Y++F+A+R + +F NPF +M Sbjct: 160 IEQEFSTKGLPVSLIGMDCELMTTYIEFVADRLLQALNCPKVFG-VPNPFGFM 211 >gi|113461104|ref|YP_719172.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus somnus 129PT] gi|170717681|ref|YP_001784756.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus somnus 2336] gi|112823147|gb|ABI25236.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Haemophilus somnus 129PT] gi|168825810|gb|ACA31181.1| Ribonucleoside-diphosphate reductase [Haemophilus somnus 2336] Length = 376 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT D + + L++ + E + FY FA + M Sbjct: 166 QLYGLYGEGTYTVDGKACKVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYELFVAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 EWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWIN 337 >gi|289705575|ref|ZP_06501967.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus luteus SK58] gi|289557804|gb|EFD51103.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus luteus SK58] Length = 323 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 69/301 (22%), Positives = 125/301 (41%), Gaps = 24/301 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W + LTD+ERL+ R +++ +++ Sbjct: 31 VNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMRVFTGLTLLDTIQGTVGAVSLIPDAM 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L AF E+VH+ ++ I ++L P I W+ + Sbjct: 88 TPHEEAVLTNIAFMESVHAKSYSSIFSTLA-----------STPEIDEAFRWSRENRNLQ 136 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + + + + E FY+GF + L ++ A+ + I+R Sbjct: 137 AKAGLIVERYDGQDPYKKK--IASTLLESFLFYSGFYWPMYLSAHARLTNTADLIRLIIR 194 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q IE P +E + + +L E E+ Y H+ VGL Sbjct: 195 DEAVH-GYYIGYKYQRSIETLPEEKREELKAFTFELLFELYENEVEYTHDLYDA--VGL- 250 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKKEKN--FFETRVTEYQQ 345 A ++++ + AN+ +G EP+F T N P + + ++N FF + Y Sbjct: 251 AEDVKKFLHYNANKALMNLGYEPMFPAETTNVNPAILSALSPNSDENHDFFSGSGSSYVI 310 Query: 346 G 346 G Sbjct: 311 G 311 >gi|161582009|ref|NP_230900.2| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae O1 biovar El Tor str. N16961] gi|255745652|ref|ZP_05419600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholera CIRS 101] gi|262159072|ref|ZP_06030184.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae INDRE 91/1] gi|262169430|ref|ZP_06037122.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC27] gi|262191406|ref|ZP_06049594.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae CT 5369-93] gi|255736727|gb|EET92124.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholera CIRS 101] gi|262022243|gb|EEY40952.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC27] gi|262029257|gb|EEY47909.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae INDRE 91/1] gi|262032695|gb|EEY51245.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae CT 5369-93] gi|327483944|gb|AEA78351.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Vibrio cholerae LMA3894-4] Length = 377 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIELT 165 Query: 174 -----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 + G + E + + E + FY FA + M Sbjct: 166 NDYHRYGEGQHQINGETITVSLKELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +E +Q+S + EA E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GLEP + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAATNNPIPWIN 338 >gi|24373963|ref|NP_718006.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella oneidensis MR-1] gi|24348405|gb|AAN55450.1|AE015682_5 ribonucleoside-diphosphate reductase, beta subunit [Shewanella oneidensis MR-1] Length = 376 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 72/291 (24%), Positives = 123/291 (42%), Gaps = 24/291 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + R I + ++ T Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNHEILRRATDIAEFYDHLIKLT 165 Query: 167 QTLSSPSFTTGTKDAD------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q T D + + + L++ + E + FY FA + M Sbjct: 166 QIYHLLGEGTHVIDGEPVEVNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN I I Q ++P + E QQ++ + +A E Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILTIMQGGKDDPEMGEIAIECQQEAYNLFLKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +A G +GLN QY+++I N+R + L + NP PWM Sbjct: 286 EWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPQPYAEQTNPLPWM 336 >gi|317048919|ref|YP_004116567.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b] gi|316950536|gb|ADU70011.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b] Length = 376 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ AF E +HS ++ +II ++ D +F+ I A+A +Y Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNEQILARAQDISKYYDDLIEMT 165 Query: 166 ---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 T ++ + T + A ++ L + E + FY FA + Sbjct: 166 NYWHLLGEGTHQVAGKTVTVDLR-ALKKQLYICLMSVNALEAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ KE + R + +A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLMRTGEDDPEMKEIAAECRDECYDLFKKAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWAEYLFSGGSMIGLNKDILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|229505158|ref|ZP_04394668.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae BX 330286] gi|229511170|ref|ZP_04400649.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae B33] gi|229515628|ref|ZP_04405087.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TMA 21] gi|229518289|ref|ZP_04407733.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC9] gi|229521368|ref|ZP_04410787.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TM 11079-80] gi|229525854|ref|ZP_04415259.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae bv. albensis VL426] gi|229529665|ref|ZP_04419055.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae 12129(1)] gi|229608178|ref|YP_002878826.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae MJ-1236] gi|229333439|gb|EEN98925.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae 12129(1)] gi|229339435|gb|EEO04452.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae bv. albensis VL426] gi|229341466|gb|EEO06469.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TM 11079-80] gi|229345004|gb|EEO09978.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC9] gi|229347397|gb|EEO12357.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TMA 21] gi|229351135|gb|EEO16076.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae B33] gi|229357381|gb|EEO22298.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae BX 330286] gi|229370833|gb|ACQ61256.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae MJ-1236] Length = 381 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 53 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 109 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 110 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIELT 169 Query: 174 -----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 + G + E + + E + FY FA + M Sbjct: 170 NDYHRYGEGQHQINGETITVSLKELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 229 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +E +Q+S + EA E Sbjct: 230 EGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEK 289 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GLEP + T NP PW++ Sbjct: 290 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAATNNPIPWIN 342 >gi|4389291|pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a Length = 375 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 130/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 48 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS +F +II ++ D +F+ Y E+ +T Sbjct: 105 ETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T T++ + T ++ ++ L + E + Y FA + Sbjct: 165 SYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIRXYVSFACSFAFAEREL 223 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RD +LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 224 MEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQE 283 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 284 KDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 336 >gi|121590730|ref|ZP_01678061.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 2740-80] gi|147674333|ref|YP_001216820.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae O395] gi|153212320|ref|ZP_01948108.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 1587] gi|153801907|ref|ZP_01956493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-3] gi|153823603|ref|ZP_01976270.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae B33] gi|153827294|ref|ZP_01979961.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-2] gi|153829732|ref|ZP_01982399.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 623-39] gi|227081427|ref|YP_002809978.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae M66-2] gi|254291706|ref|ZP_04962493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae AM-19226] gi|254848379|ref|ZP_05237729.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10] gi|297578847|ref|ZP_06940775.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae RC385] gi|298498653|ref|ZP_07008460.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MAK 757] gi|9655738|gb|AAF94414.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547411|gb|EAX57522.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 2740-80] gi|124116698|gb|EAY35518.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 1587] gi|124122552|gb|EAY41295.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-3] gi|126518882|gb|EAZ76105.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae B33] gi|146316216|gb|ABQ20755.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae O395] gi|148874766|gb|EDL72901.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 623-39] gi|149738785|gb|EDM53127.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-2] gi|150422390|gb|EDN14350.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae AM-19226] gi|227009315|gb|ACP05527.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae M66-2] gi|227013172|gb|ACP09382.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae O395] gi|254844084|gb|EET22498.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10] gi|297536441|gb|EFH75274.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae RC385] gi|297542986|gb|EFH79036.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MAK 757] Length = 389 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 61 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 117 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 118 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIELT 177 Query: 174 -----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 + G + E + + E + FY FA + M Sbjct: 178 NDYHRYGEGQHQINGETITVSLKELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 237 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +E +Q+S + EA E Sbjct: 238 EGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEK 297 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GLEP + T NP PW++ Sbjct: 298 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAATNNPIPWIN 350 >gi|76875271|emb|CAI86492.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pseudoalteromonas haloplanktis TAC125] Length = 359 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 32 WRPEEVDVSKDRLDFQA---LPDHEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPEL 88 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-SSP 172 ++ AF E +HS ++ +II ++ +F+ I+ +A+ +Y L +S Sbjct: 89 ETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISERADAVTKYYDDLINSV 148 Query: 173 SFTTGTKDADQEF-----LQDLF----VFYV------VFEGMWFYTGFAQILSLGRANKM 217 S + E + +LF Y+ + E + FY FA + M Sbjct: 149 SLYNLYGEGKHEINGKSVVVNLFELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELM 208 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWTKEFQQKSRT--MLHEATLLEI 273 G A+ + I RDE+LHL+ ++N Q ++P + Q + M +A E Sbjct: 209 EGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQCRDEAIKMFVDAAEQEK 268 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R IG FK NP PW++ Sbjct: 269 EWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGFPAQFKNNSNPIPWIN 320 >gi|222475861|ref|YP_002564382.1| ribonucleotide reductase [Halorubrum lacusprofundi ATCC 49239] gi|222454232|gb|ACM58496.1| ribonucleotide reductase [Halorubrum lacusprofundi ATCC 49239] Length = 336 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/322 (22%), Positives = 137/322 (42%), Gaps = 18/322 (5%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S+ QL P +Y + + N++W+ TE D+ +K T E+ +IKR + Sbjct: 17 SERTQLKPYEYNDFLDYKDAIRNSYWVHTEFNFSGDVQDFKVNT--TPAEKTVIKRTMLA 74 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 A E V IY + E + A E H + +++ LG+ G+ F Sbjct: 75 IAQIEVQV-KTFWSDIYEEMPKAEIGSVGMTFAESEVRHMDAYSHLLDVLGI-TGD-FEE 131 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 EVP++ + + G D + ++ + +F + E + ++ F + Sbjct: 132 VTEVPAVKDRIEYL--------DECLERGQSDDTKGYVMSILLFSMFVEHVSLFSQFLIM 183 Query: 209 LSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 S + K GIA + ++E +H FG+++++ I+ ENP L+ EF+ + R Sbjct: 184 TSFDKYEKKFKGIANAVEATSKEEQIHGLFGVELVDTIREENPGLFDDEFEAEIREACRR 243 Query: 268 ATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WM 323 A E+ +G + L ++++ N+ +G+ P+F+ ++ W Sbjct: 244 AYEAEMGMLDWIFGEGELQFLPREYVNEFLKDRFNQSLENVGVYPMFETDDDLLDETRWF 303 Query: 324 SEVIDLKKEKNFFETRVTEYQQ 345 E I + K+ +FF R T Y + Sbjct: 304 DEDIMMTKDNDFFSKRSTTYNK 325 >gi|332162349|ref|YP_004298926.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606422|emb|CBY27920.1| ribonucleotide reductase of class Ia (aerobic),beta subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|325666579|gb|ADZ43223.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864218|emb|CBX74276.1| ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia enterocolitica W22703] Length = 376 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +II ++ D +F+ I +A + + Y + Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMT 165 Query: 173 SF----TTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 S+ GT + +E + L++ + E + FY FA + M Sbjct: 166 SYYHLLGEGTHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + +E QQ+ + A E Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F NP PW++ Sbjct: 286 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTRTNPIPWIN 337 >gi|239917558|ref|YP_002957116.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Micrococcus luteus NCTC 2665] gi|281413955|ref|ZP_06245697.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Micrococcus luteus NCTC 2665] gi|239838765|gb|ACS30562.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Micrococcus luteus NCTC 2665] Length = 323 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/301 (22%), Positives = 125/301 (41%), Gaps = 24/301 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W + LTD+ERL+ R +++ +++ Sbjct: 31 VNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMRVFTGLTLLDTIQGTVGAVSLIPDAM 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L AF E+VH+ ++ I ++L P I W+ + Sbjct: 88 TPHEEAVLTNIAFMESVHAKSYSSIFSTLA-----------STPEIDEAFRWSRENRNLQ 136 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + + + + E FY+GF + L ++ A+ + I+R Sbjct: 137 AKARLIVERYDGQDPYKKK--IASTLLESFLFYSGFYWPMYLSAHARLTNTADLIRLIIR 194 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q IE P +E + + +L E E+ Y H+ VGL Sbjct: 195 DEAVH-GYYIGYKYQRSIETLPEEKREELKAFTFELLFELYENEVEYTHDLYDA--VGL- 250 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKKEKN--FFETRVTEYQQ 345 A ++++ + AN+ +G EP+F T N P + + ++N FF + Y Sbjct: 251 AEDVKKFLHYNANKALMNLGYEPMFPAETTNVNPAILSALSPNSDENHDFFSGSGSSYVI 310 Query: 346 G 346 G Sbjct: 311 G 311 >gi|161353784|ref|NP_274308.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis MC58] gi|304387414|ref|ZP_07369605.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria meningitidis ATCC 13091] gi|304338507|gb|EFM04626.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria meningitidis ATCC 13091] gi|316984078|gb|EFV63056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Neisseria meningitidis H44/76] gi|325134468|gb|EGC57113.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M13399] gi|325140485|gb|EGC63006.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis CU385] gi|325144569|gb|EGC66868.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M01-240013] gi|325200084|gb|ADY95539.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis H44/76] gi|325204292|gb|ADY99745.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M01-240355] gi|325205936|gb|ADZ01389.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M04-240196] Length = 377 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L G K + + L++ + V E + FY FA + M Sbjct: 166 QYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +++ + E Q + + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 286 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 338 >gi|45268714|dbj|BAD12266.1| p53-inducible ribonucleotide reductase small subunit 2 short form gamma [Homo sapiens] Length = 139 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 9/119 (7%) Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 +DE LH +F + +L K +++ R ++ +A +E + E +P G +G+N Sbjct: 14 QDEGLHCDFACLMFQ-------YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMN 66 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A Sbjct: 67 CILMKQYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFA 123 >gi|162139926|ref|YP_339935.2| ribonucleotide-diphosphate reductase subunit beta [Pseudoalteromonas haloplanktis TAC125] Length = 376 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSKDRLDFQA---LPDHEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-SSP 172 ++ AF E +HS ++ +II ++ +F+ I+ +A+ +Y L +S Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISERADAVTKYYDDLINSV 165 Query: 173 SFTTGTKDADQEF-----LQDLF----VFYV------VFEGMWFYTGFAQILSLGRANKM 217 S + E + +LF Y+ + E + FY FA + M Sbjct: 166 SLYNLYGEGKHEINGKSVVVNLFELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWTKEFQQKSRT--MLHEATLLEI 273 G A+ + I RDE+LHL+ ++N Q ++P + Q + M +A E Sbjct: 226 EGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQCRDEAIKMFVDAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R IG FK NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGFPAQFKNNSNPIPWIN 337 >gi|7226528|gb|AAF41664.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis MC58] gi|254670476|emb|CBA06168.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha153] Length = 384 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L G K + + L++ + V E + FY FA + M Sbjct: 173 QYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +++ + E Q + + +A E Sbjct: 233 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEK 292 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 293 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345 >gi|297250515|ref|ZP_06864465.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria polysaccharea ATCC 43768] gi|296838835|gb|EFH22773.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria polysaccharea ATCC 43768] Length = 377 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L G K + + L++ + V E + FY FA + M Sbjct: 166 QYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +++ + E Q + + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 286 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 338 >gi|123441721|ref|YP_001005705.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088682|emb|CAL11484.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 376 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +II ++ D +F+ I +A + + Y + Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMT 165 Query: 173 SF----TTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 S+ GT + +E + L++ + E + FY FA + M Sbjct: 166 SYYHLLGEGTHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + +E QQ+ + A E Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F NP PW++ Sbjct: 286 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFNTRTNPIPWIN 337 >gi|218768312|ref|YP_002342824.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis Z2491] gi|121052320|emb|CAM08650.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis Z2491] gi|261392428|emb|CAX49973.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide reductase) [Neisseria meningitidis 8013] Length = 377 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165 Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 Q + T + ++ L V+ E + FY FA + Sbjct: 166 QYYNLLGEGVHNVGGKPITVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++ + E Q + + +A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 285 KEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 338 >gi|312885176|ref|ZP_07744856.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] gi|309367189|gb|EFP94761.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] Length = 377 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 124/293 (42%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDF---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169 ++ +F E +HS ++ +II ++ D G +F+ E I +A Y L Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDLIQLT 165 Query: 170 ------SSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 G ++ + + L++ + E + FY FA + M Sbjct: 166 NDYHRYGEGKHVIGGEEVNVSLHNLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN ++ +E +Q+ + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKDAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ + + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLDAAYPEATSNPIPWIN 338 >gi|319410557|emb|CBY90925.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide reductase) [Neisseria meningitidis WUE 2594] gi|325208250|gb|ADZ03702.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis NZ-05/33] Length = 384 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172 Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 Q + T + ++ L V+ E + FY FA + Sbjct: 173 QYYNLLGEGVHNVGGKPITVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 231 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++ + E Q + + +A E Sbjct: 232 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQE 291 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 292 KEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345 >gi|121635003|ref|YP_975248.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis FAM18] gi|120866709|emb|CAM10461.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis FAM18] gi|325128288|gb|EGC51172.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis N1568] gi|325130346|gb|EGC53112.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis OX99.30304] gi|325132508|gb|EGC55201.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M6190] gi|325136206|gb|EGC58814.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M0579] gi|325138282|gb|EGC60851.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis ES14902] gi|325142424|gb|EGC64828.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis 961-5945] gi|325198443|gb|ADY93899.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis G2136] gi|325201998|gb|ADY97452.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M01-240149] Length = 377 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 165 Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 Q + T + ++ L V+ E + FY FA + Sbjct: 166 QYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++ + E Q + + +A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 285 KEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 338 >gi|308389409|gb|ADO31729.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis alpha710] Length = 384 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172 Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 Q + T + ++ L V+ E + FY FA + Sbjct: 173 QYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 231 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++ + E Q + + +A E Sbjct: 232 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQE 291 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 292 KEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345 >gi|161870162|ref|YP_001599332.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis 053442] gi|161595715|gb|ABX73375.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis 053442] Length = 384 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L G K + + L++ + V E + FY FA + M Sbjct: 173 QYYNLLGEGMHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +++ + E Q + + +A E Sbjct: 233 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEK 292 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 293 EWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345 >gi|332534563|ref|ZP_08410398.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332035983|gb|EGI72462.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 376 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 127/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSKDRLDFQA---LPDHEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-SSP 172 ++ AF E +HS ++ +II ++ +F+ I+ +A+ +Y L +S Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISERADAVTKYYDDLINSV 165 Query: 173 SFTTGTKDADQEF-----LQDLF----VFYV------VFEGMWFYTGFAQILSLGRANKM 217 S + E + +LF Y+ + E + FY FA + M Sbjct: 166 SLYNLYGEGKHEINGKTVIINLFELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWTKEFQQKSRT--MLHEATLLEI 273 G A+ + I RDE+LHL+ ++N Q ++P + Q + M +A E Sbjct: 226 EGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQCRDEAIKMFVDAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R IGL F+ NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGLPAQFENNSNPIPWIN 337 >gi|119774862|ref|YP_927602.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella amazonensis SB2B] gi|119767362|gb|ABL99932.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella amazonensis SB2B] Length = 391 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/291 (24%), Positives = 121/291 (41%), Gaps = 24/291 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D ER + NL + +S+ + +A +S PE Sbjct: 64 WRPEEVDVSRDKIDF---GKLPDHERHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 120 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + + I+A + ++ T Sbjct: 121 ETWIETWSFSETIHSRSYTHIIRNIVNDPSSVFDDIVVNEEILKRAGDISAYYDELIKLT 180 Query: 167 QTLSSPSFTTGTKD---------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 Q T T D A ++ L + E + FY FA + M Sbjct: 181 QIYHLHGEGTHTVDGHVVDVTVRALKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLM 240 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF----QQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN ++N ++ E QQ++ + A E Sbjct: 241 EGNAKIIRLIARDEALHLNSTQHILNIMQGGKDDAEMAEIAIECQQEAYDLFLRAAEQEK 300 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +A G +GLN QY+++I N+R + L + + NP PWM Sbjct: 301 EWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPLPYPESTNPLPWM 351 >gi|254805092|ref|YP_003083313.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha14] gi|254668634|emb|CBA06257.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha14] Length = 384 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172 Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 Q + T + ++ L V+ E + FY FA + Sbjct: 173 QYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 231 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++ + E Q + + +A E Sbjct: 232 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQE 291 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 292 KEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345 >gi|260598671|ref|YP_003211242.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter turicensis z3032] gi|260217848|emb|CBA32365.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Cronobacter turicensis z3032] Length = 376 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDFQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILKRAEGISHYYDDLIEMT 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 GT + E + L++ + E + FY FA + M Sbjct: 166 SYWHLLGEGTHSVNGKTVTVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + A E Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHMLNLMRSGEDDPEMAIIAEECKQECYDLFVLAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ FK NP PW++ Sbjct: 286 EWAEYLFQGGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFKTRSNPIPWIN 337 >gi|327198722|emb|CCA61423.1| unnamed protein product [Diadromus pulchellus ascovirus 4a] Length = 395 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/374 (20%), Positives = 144/374 (38%), Gaps = 67/374 (17%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y + K+ +HW+P EVPM DD+ W N L D+++ + FF + Sbjct: 12 PFQYEQFYNKWKVHERSHWLPAEVPMHDDVHDW--NNRLDDNQKKFLTNIFRFFTQGDVD 69 Query: 96 VANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 VA + PE ++ A EAVH + ++I +LG+ E + + E Sbjct: 70 VAGAYCSEYLPNFCETPEIAMFMCSVAAREAVHIDAYSHLIETLGMPEST-YREFLEYHE 128 Query: 155 ITAKANWALQYTQ----TLSSPSFTTGTKDADQEFL--------QDLFVFY--------- 193 + K ++ ++ +L SF T + D+ V++ Sbjct: 129 MKEKQDYIKKFQHGNYGSLKDDSFMTKLGVCISMLVLVVLFALGVDVLVWFSSLLPAVML 188 Query: 194 ---------------------VVFEG----MWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 +F G M ++ F +LS M G+ + + + Sbjct: 189 ASSHIHRYRQRLIKEHIAAGIALFSGFTEGMQLFSSFTMLLSFPMNGLMKGMGQIVSWSI 248 Query: 229 RDESLHLNFGIDVINQIKIEN---------------PHLWTKEFQQKSRTMLH-EATLLE 272 DE+ H + I + EN P + ++ + M+ E + Sbjct: 249 VDETQHTDGMITLFKIFVDENTECRCNPILGCNCIRPDVLRDTVKKIALEMVRLEDEFIN 308 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDLKK 331 +AY + F+ ++ +QY++FIAN+R + + P + ++NP P +I+ Sbjct: 309 LAYDEYADDEVFMNISKTKLKQYIRFIANKRMEAMRYDHPFPEASDNPLPEFEIMINAPI 368 Query: 332 EKNFFETRVTEYQQ 345 NFFE R T+Y + Sbjct: 369 NTNFFENRSTDYAR 382 >gi|41387638|gb|AAS01682.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2] Length = 343 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 31/299 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109 N W TE + DDL + + LT++ER + F ++++ LV NI +L ++ S Sbjct: 63 NRWTETEFVISDDL---RDVSMLTEEERYFYRFLFTFLSAADDLVNLNIDNLLGLF---S 116 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 + Y Q EAVHS + I L L E P+I +K +W + Sbjct: 117 QKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAIQSKLDWLNKR 176 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 SS + + ++ ++ EG++F FA I L N V + Sbjct: 177 VIECSS--------------IAEKYILMILIEGIFFSASFAAIAYLRINNLFVVTCQINN 222 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 I RDE++H+ + +N + K + + + EA +E A+ P Sbjct: 223 LISRDEAIHVEASCCIF-----KNYLMGPKPSIGRVQELFKEAVQIECAFLRTAAPHNSQ 277 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 L+ + Y+++ A+R ++ + P++ + + ++ NFFE R T Y Sbjct: 278 LLDVEAICSYVRYSADRLLKELDMPPIYNEPKPTADFPLALMTASNNTNFFERRNTAYS 336 >gi|254672337|emb|CBA05511.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha275] Length = 345 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 129/294 (43%), Gaps = 27/294 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ E ITA+A + ++YT Sbjct: 113 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYT 172 Query: 167 Q----------TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 Q + T + ++ L V+ E + FY FA + Sbjct: 173 QYYNLLGEGVHNVGGKPITVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAEREL 231 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ +++ + E Q + + +A E Sbjct: 232 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQE 291 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ +NP PW++ Sbjct: 292 KEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345 >gi|85059563|ref|YP_455265.1| ribonucleotide-diphosphate reductase subunit beta [Sodalis glossinidius str. 'morsitans'] gi|84780083|dbj|BAE74860.1| ribonucleoside-diphosphate reductase 1 beta subunit [Sodalis glossinidius str. 'morsitans'] Length = 376 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDGLIELT 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 GT + E + L++ + E + FY FA + M Sbjct: 166 SYYHLLGEGTHQVNGKTVVVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + +E QQ+S + A E Sbjct: 226 EGNAKIIRLIARDEALHLTSTQHMLNLMRSGEDDPEMAEIARECQQESYDLFLLAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F NP PW++ Sbjct: 286 EWASYLFRDGSMIGLNKDILCQYVEYITNIRMQSVGLDLPFATRSNPIPWIN 337 >gi|261867684|ref|YP_003255606.1| ribonucleotide-diphosphate reductase subunit beta [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413016|gb|ACX82387.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 376 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 125/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT D + + L++ + E + FY FA + M Sbjct: 166 QLYSLYGEGTYTVDGKECVVSLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 DWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWIN 337 >gi|156933156|ref|YP_001437072.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter sakazakii ATCC BAA-894] gi|156531410|gb|ABU76236.1| hypothetical protein ESA_00966 [Cronobacter sakazakii ATCC BAA-894] Length = 376 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDFQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILKRAEGISHYYDDLIEMT 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 GT + E + L++ + E + FY FA + M Sbjct: 166 SYWHLLGEGTHSVNGKTVTVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + A E Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHMLNLMRSGEDDPEMAAIAEECKQECYDLFVLAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ FK NP PW++ Sbjct: 286 EWAEYLFQGGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFKTRSNPIPWIN 337 >gi|251792451|ref|YP_003007177.1| ribonucleotide-diphosphate reductase subunit beta [Aggregatibacter aphrophilus NJ8700] gi|315634378|ref|ZP_07889665.1| ribonucleotide-diphosphate reductase beta subunit [Aggregatibacter segnis ATCC 33393] gi|247533844|gb|ACS97090.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter aphrophilus NJ8700] gi|315476968|gb|EFU67713.1| ribonucleotide-diphosphate reductase beta subunit [Aggregatibacter segnis ATCC 33393] Length = 376 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 125/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT D + + L++ + E + FY FA + M Sbjct: 166 QLYSLYGEGTYTVDGKECVVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 DWADYLFKDGSMIGLNRDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWIN 337 >gi|127512873|ref|YP_001094070.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella loihica PV-4] gi|126638168|gb|ABO23811.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella loihica PV-4] Length = 376 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 85/344 (24%), Positives = 143/344 (41%), Gaps = 41/344 (11%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPM 61 NN L P+ G+ VNV AR D+ KY +EK + + W P EV + Sbjct: 11 NNALLEPMFLGQS-VNV-------ARYDIQ-----KYE-VFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + L D E+ + NL + +S+ + +A +S PE ++ + Sbjct: 57 SKDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY---------------- 165 F E +HS ++ +II ++ D +F+ + I +A+ Y Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEEILKRASDIADYYDNLIELSQIYHLMGE 173 Query: 166 -TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 T ++ + T+ A ++ L + V E + FY FA + M G A+ Sbjct: 174 GTHEINGKTVEVTTR-AIKKALYLCMMSVNVLEAIRFYVSFACSFAFAERKLMEGNAKII 232 Query: 225 QYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE+LHLN ++ Q ++P + KE +Q + + +A E +A Sbjct: 233 RLIARDEALHLNSTQHILKLMQGGKDDPEMAEIAKECEQTAIDIFVKAAEQEKEWAKYLF 292 Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 G +GLN QY+++I N R + L + NP PWM Sbjct: 293 KDGSMIGLNEQILCQYVEYITNERMKSVNLVSPYADQSNPLPWM 336 >gi|325268103|ref|ZP_08134749.1| ribonucleotide-diphosphate reductase beta subunit [Kingella denitrificans ATCC 33394] gi|324980488|gb|EGC16154.1| ribonucleotide-diphosphate reductase beta subunit [Kingella denitrificans ATCC 33394] Length = 384 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 131/293 (44%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + L + E+ + NL + +S+ + + +S PE Sbjct: 56 WRPEEVDLSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVGFLPLVSIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ AF E +HS ++ +II ++ D +F+ + I A+A + ++YT Sbjct: 113 ETWIETWAFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYILARAEDIACYYDDLIEYT 172 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L + T K + E + L++ + V E + FY FA + M Sbjct: 173 QYFNLLGEGTHTVNGKIVEVSLHELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 232 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL-W---TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ + W ++ QQ+ + +A E Sbjct: 233 EGNAKIIKLIARDEALHLTSTQHMLNLMRGGSEGTEWAQIAQDLQQECFDLFVKAAEQEK 292 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F K T+NP PW++ Sbjct: 293 EWASYLFKDGSMIGLNKDILCQYVEYITNHRMLAVGLPVAFPKSTQNPIPWIN 345 >gi|296103863|ref|YP_003614009.1| ribonucleotide-diphosphate reductase beta subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058322|gb|ADF63060.1| ribonucleotide-diphosphate reductase beta subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 376 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 129/293 (44%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDFQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T ++ + T + ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHNVNGKTVTVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERKL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVLAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 337 >gi|261211025|ref|ZP_05925315.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. RC341] gi|260840000|gb|EEX66600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. RC341] Length = 360 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 32 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 88 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 89 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLT 148 Query: 174 -----FTTGTKDADQEFLQ-----------DLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 + G + E + + E + FY FA + M Sbjct: 149 NDYHRYGEGQHQINGETINVSLKNLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 208 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +E +Q+S + EA E Sbjct: 209 EGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEK 268 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GLEP + T NP PW++ Sbjct: 269 EWAAYLFKDGSMIGLNRDILCQYVEYITNIRMQAVGLEPAYPTATTNPIPWIN 321 >gi|46401830|ref|YP_006922.1| putative aerobic ribonucleoside diphosphate reductase, small subunit [Enterobacteria phage T5] gi|45775008|gb|AAS77140.1| putative aerobic ribonucleoside diphosphate reductase, small subunit [Enterobacteria phage T5] gi|51512032|gb|AAU05231.1| ribonucleotide reductase beta subunit [Enterobacteria phage T5] gi|59897231|gb|AAX12026.1| ribonucleoside diphosphate reductase I beta chain [Enterobacteria phage T5] Length = 381 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/305 (23%), Positives = 123/305 (40%), Gaps = 27/305 (8%) Query: 47 LSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYR 106 L A + W TE+ ++ D W + L + + + NL + ++S ++ AI Sbjct: 40 LLARSQFWTETEISLEADKKQWPN---LPREIQEITLLNLAWQTQTDSFISRAPEAAIMP 96 Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL--- 163 +S PE L + ++ E +HS + II ++ D E + + A+ ++ Sbjct: 97 LVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAFARIADSVELF 156 Query: 164 -------QY---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 QY T F ++ + L F Y + E M FY FA Sbjct: 157 DELYQLGQYFIAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGL-EAMQFYASFAC 215 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 +L + + GIA+ Q I +DE+LH +I + + E K+ L + Sbjct: 216 TFALAENDILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVDEAVAKAPAQLLK 275 Query: 268 ATLLEIAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFKYTENPFPWM 323 EI + H + +GLNA E+Y+ F+ IG+E L T+NP PW+ Sbjct: 276 TLKTEIEWGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVEWPSHLPVITKNPIPWI 335 Query: 324 SEVID 328 +D Sbjct: 336 MNWLD 340 >gi|294637129|ref|ZP_06715438.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella tarda ATCC 23685] gi|291089663|gb|EFE22224.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella tarda ATCC 23685] Length = 376 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 128/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +II ++ D +F+ I +A + ++ Y + S Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVTDPSVVFDDIVSNEEILKRARDISVYYDDLIEST 165 Query: 173 SF----TTGTKDADQEF----LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217 + GT + + L+DL + E + FY FA + M Sbjct: 166 GYYHLLGEGTHQVNGKTVIVNLRDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E + + + +A E Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHILNLMRSGQDDPEMAEIAAECETQCYDLFVQAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 DWASYLFRDGSMIGLNRDILCQYVEYITNIRMQAVGLSLPFETRSNPIPWIN 337 >gi|260913913|ref|ZP_05920387.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC 43325] gi|260632000|gb|EEX50177.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC 43325] Length = 376 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 127/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEIIKRAKDISCYYDDLIRDT 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT + D + + L++ + E + FY FA + M Sbjct: 166 QLYTLYGEGTYNVDGQECTVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMASGQDDPEMAEIVEECKQEAYDLFVAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 EWASYLFKDGSMIGLNRDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWIN 337 >gi|262402402|ref|ZP_06078963.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. RC586] gi|262351184|gb|EEZ00317.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. RC586] Length = 360 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 32 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 88 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y L + Sbjct: 89 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHILKRAKDIAHYYDDLIQLT 148 Query: 174 -----FTTGTKDADQEFLQ-----------DLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 + G + E + + E + FY FA + M Sbjct: 149 NDYHRYGEGQHQINGETVNVSLKNLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 208 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ +E +Q+S + EA E Sbjct: 209 EGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEK 268 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GLEP + T NP PW++ Sbjct: 269 EWAAYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPTATTNPIPWIN 321 >gi|238785708|ref|ZP_04629683.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia bercovieri ATCC 43970] gi|238713393|gb|EEQ05430.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia bercovieri ATCC 43970] Length = 376 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQ-- 164 ++ +F E +HS ++ +II ++ D +F+ + + I+A + ++ Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISAYYDDLIEMT 165 Query: 165 -YTQTLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Y L S K +E + L++ + E + FY FA + M Sbjct: 166 SYYHLLGEGSHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + +E Q + + A E Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEECQSQCYDLFVLAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F NP PW++ Sbjct: 286 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTRSNPIPWIN 337 >gi|301156451|emb|CBW15922.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Haemophilus parainfluenzae T3T1] Length = 376 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 124/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT D + + L++ + E + FY FA + M Sbjct: 166 QLYSLYGEGTYTVDGKECVVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F NP PW++ Sbjct: 286 EWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFGARSNPIPWIN 337 >gi|237747538|ref|ZP_04578018.1| ribonucleotide-diphosphate reductase subunit beta [Oxalobacter formigenes OXCC13] gi|229378900|gb|EEO28991.1| ribonucleotide-diphosphate reductase subunit beta [Oxalobacter formigenes OXCC13] Length = 376 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 129/292 (44%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF-------NMYREVPSITAKANWALQ-- 164 ++ +F E +HS ++ +II ++ D +F N+ R I+ + ++ Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVSNENIVRRATDISVYYDDLIEMT 165 Query: 165 -YTQTLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Y L + K + E + L++ + V E + FY FA + M Sbjct: 166 GYYHLLGEGTHQVNGKTVNVSLYELKKKLYMCLMSVNVLEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N + ++P + KE +++S + A E Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHMLNLMGSGEDDPDMAEIAKECREQSIDLFVRAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +G+ F+ NP PW++ Sbjct: 286 EWADYLFRDGSMIGLNRDILCQYVEYITNTRMQAVGMPLPFEIRSNPIPWIN 337 >gi|269139684|ref|YP_003296385.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202] gi|267985345|gb|ACY85174.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202] gi|304559553|gb|ADM42217.1| Ribonucleotide reductase of class Ia, beta subunit [Edwardsiella tarda FL6-60] Length = 376 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +II ++ D +F+ I +A + + Y + S Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVTDPALVFDDIVSNEEILKRARDISAYYDDLIEST 165 Query: 173 SF----TTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT + +E + L++ + E + FY FA + M Sbjct: 166 GYYHLLGEGTHQINGKPVSVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E + + + +A E Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHILNLMRSGQDDPEMAEIAAECEDQCYDLFVQAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 EWAGYLFRDGSMIGLNRDILCQYVEYITNIRMQAVGLSLPFETRSNPIPWIN 337 >gi|50120137|ref|YP_049304.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium atrosepticum SCRI1043] gi|49610663|emb|CAG74108.1| ribonucleoside-diphosphate reductase 1 beta chain [Pectobacterium atrosepticum SCRI1043] Length = 376 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 127/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I +A Y +L + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVANEEILKRAKDISGYYDSLIEMT 165 Query: 174 -----FTTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 GT + + + + L+V + E + FY FA + M Sbjct: 166 SYYHLLGEGTHQVNGKTVTVNLHALKKQLYVCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + +E QQ+ + A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 EWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQGVGLSLPFQTRTNPIPWIN 337 >gi|325578589|ref|ZP_08148689.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus parainfluenzae ATCC 33392] gi|325159825|gb|EGC71955.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus parainfluenzae ATCC 33392] Length = 376 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 124/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT D + + L++ + E + FY FA + M Sbjct: 166 QLYSLYGEGTYAVDGKECVVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F NP PW++ Sbjct: 286 EWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFGARSNPIPWIN 337 >gi|332974193|gb|EGK11127.1| ribonucleotide-diphosphate reductase beta subunit [Psychrobacter sp. 1501(2011)] Length = 377 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 131/293 (44%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L+ E+ + NL + +S+ + + + +S PE Sbjct: 49 WRPEEVDVSKDRIDY---GNLSTHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ + I +A+ Y L S Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIMDNEHILQRASDIAHYYDELYQNS 165 Query: 174 -----FTTGT-------KDAD-QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F GT K D ++ + L++ V V E + FY FA + M Sbjct: 166 QLYSLFGPGTHMVNGEQKHVDLRKLKKQLYLCLVAVNVLEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN + ++P + ++ +++S + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMINILASGKDDPEMAEIAEDCREESIEIFRKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMS 324 +A G +GLN QY+++I N R +GL +F ++ NP PW++ Sbjct: 286 EWAGYLFKDGSMIGLNKDILCQYVEYITNLRMEAVGLPSIFPDSKSNPIPWIN 338 >gi|71892252|ref|YP_277986.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796358|gb|AAZ41109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 376 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 125/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D ++S L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDISKDRIDFQS---LPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ +F+ I +A Y L + Sbjct: 106 EIWVETWSFFETIHSRSYTHIIRNIVNHPSLIFDDIISNKEILKRAKDISTYYDNLIELT 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 G + E + L++ + V E + FY FA + M Sbjct: 166 SYYHILGPGIHQINNNTVAVNLHELKKKLYLCLISVNVLEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN ++N ++ ++P + + E QQ+S + A E Sbjct: 226 EGNAKIIRLIARDEALHLNATQHILNLMRSGSDDPEMADISTECQQESYALFLMAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A+ G +GLN QY+++I N R IGL F N PW++ Sbjct: 286 NWANYLFKDGSMIGLNKDILCQYIEYITNIRMQAIGLRTPFNIKSNVIPWIN 337 >gi|238794995|ref|ZP_04638591.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia intermedia ATCC 29909] gi|238725698|gb|EEQ17256.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia intermedia ATCC 29909] Length = 376 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 125/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +II ++ D +F+ I +A + + Y + Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMT 165 Query: 173 SF----TTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 S+ GT + E + L++ + E + FY FA + M Sbjct: 166 SYYHLLGEGTHQVNGKTVIVNLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E QQ+ + A E Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAIECQQQCYDLFVLAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F NP PW++ Sbjct: 286 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFATRTNPIPWIN 337 >gi|126208467|ref|YP_001053692.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae L20] gi|165976419|ref|YP_001652012.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251074|ref|ZP_07337260.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307250239|ref|ZP_07532194.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252630|ref|ZP_07534523.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307261475|ref|ZP_07543145.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|126097259|gb|ABN74087.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876520|gb|ABY69568.1| ribonucleoside-diphosphate reductase, beta chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650084|gb|EFL80254.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306857725|gb|EFM89826.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859875|gb|EFM91895.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306868827|gb|EFN00634.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 376 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++S L + E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSQDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165 Query: 174 -----FTTGTKDAD----QEFLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217 + G D Q L++L + V E + FY FA + M Sbjct: 166 QLYTLYGEGCYTVDGKQYQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE LHL +++N I ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEYLHLTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN +Y+++I N R +GL F + NP PW++ Sbjct: 286 EWAAYLFKDGSMIGLNEDILVKYVEYITNIRMQAVGLPRPFAASSNPIPWIN 337 >gi|253687496|ref|YP_003016686.1| ribonucleotide reductase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754074|gb|ACT12150.1| ribonucleotide reductase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 376 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 69/293 (23%), Positives = 125/293 (42%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y + +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + T ++ S T ++ L + E + FY FA + Sbjct: 166 GYYHLLGEGTHQVNGKSVTVDLHSLKKQLYICLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E QQ+ + A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWIN 337 >gi|190150315|ref|YP_001968840.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303253584|ref|ZP_07339722.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245900|ref|ZP_07527985.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247988|ref|ZP_07530018.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307254872|ref|ZP_07536697.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259315|ref|ZP_07541044.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263658|ref|ZP_07545269.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915446|gb|ACE61698.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647504|gb|EFL77722.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306853260|gb|EFM85480.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855503|gb|EFM87676.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306862169|gb|EFM94138.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866682|gb|EFM98541.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871035|gb|EFN02768.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 376 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 125/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++S L + E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSQDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165 Query: 174 -----FTTGTKDAD----QEFLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217 + G D Q L++L + V E + FY FA + M Sbjct: 166 QLYTLYGEGCYTVDGKQYQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE LHL +++N I ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEYLHLTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN +Y+++I N R +GL F + NP PW++ Sbjct: 286 EWAAYLFKDGSMIGLNEDILVKYVEYITNIRMQAVGLPRPFAASSNPIPWIN 337 >gi|296316020|ref|YP_003662484.1| ribonucleotide reductase subunit 2 [Bovine herpesvirus 5] gi|40456143|gb|AAR86121.1| UL40 ribonucleotide reductase small subunit [Bovine herpesvirus 5] Length = 315 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 75/302 (24%), Positives = 122/302 (40%), Gaps = 39/302 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL-SN 110 N W+ TE P+ DD K L+ E + F ++++ LV N+ L L + Sbjct: 35 NRWLETEFPLADDA---KDVARLSGAELEFYRFLFAFLSAADDLV--NVNLGNLSELFTQ 89 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYT 166 + Y + Q E VHS + I L ++ Y E P++ K +W + Sbjct: 90 KDILHYYIEQESIEVVHSRVYSAIQLLLFKNDAVARAGYVEDALSDPAVRRKVDWLER-- 147 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + A E + + +V ++ EG++F + FA I L N V + Sbjct: 148 ------------RVAAAESVAEKYVLMILIEGIFFSSSFAAIAYLRTHNLFVVTCQTNDL 195 Query: 227 IMRDESLHLNFGIDVINQ-IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 I RDE++H + N + E P + R + EA +E + P+G Sbjct: 196 ISRDEAVHTTASCCIFNNYLGGERPP------PDRVRKLFREAVEIEREFIWSRAPRGSH 249 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNFFETRVT 341 L+ + Y+++ A+R I L PLF T+ P M+ +K NFFE R T Sbjct: 250 ILDVEAISAYVEYSADRLLAAIHLPPLFGTPPPGTDFPLALMTA----EKHTNFFERRST 305 Query: 342 EY 343 Y Sbjct: 306 TY 307 >gi|227328222|ref|ZP_03832246.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 376 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I +A Y +L + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNDEILKRAKDISGYYDSLIEMT 165 Query: 174 -----FTTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 GT + + + + L++ + E + FY FA + M Sbjct: 166 SYYHLLGEGTHQVNGKTVTVNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + +E QQ+ + A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 EWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWIN 337 >gi|238760194|ref|ZP_04621340.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia aldovae ATCC 35236] gi|238701573|gb|EEP94144.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia aldovae ATCC 35236] Length = 376 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 125/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +II ++ D +F+ I +A + + Y + Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMT 165 Query: 173 SF----TTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 S+ GT + E + L++ + E + FY FA + M Sbjct: 166 SYYHLLGEGTHQVNGKTVVVNLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E QQ+ + A E Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHILNLMRAGEDDPEMAEIAIECQQQCYDLFVLAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F NP PW++ Sbjct: 286 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFATRTNPIPWIN 337 >gi|90409249|ref|ZP_01217354.1| ribonucleotide-diphosphate reductase beta subunit [Psychromonas sp. CNPT3] gi|90309647|gb|EAS37827.1| ribonucleotide-diphosphate reductase beta subunit [Psychromonas sp. CNPT3] Length = 381 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 126/297 (42%), Gaps = 29/297 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDFMN---LPSHEQHIFISNLKYQTLLDSIQGRSPNMALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-SSP 172 ++ +F E +HS ++ +I+ +L D E+F I +A+ QY L + Sbjct: 106 ETWIETWSFSETIHSRSYTHILRNLFTDPSEVFEDIVTNVEIQKRASDIAQYYDALIHAV 165 Query: 173 SFTT--GTKDADQEFL---------------QDLFVFYV---VFEGMWFYTGFAQILSLG 212 F G + + E+L + L++ E + FY FA + Sbjct: 166 QFMQLHGLEQSKIEYLDLDGNPEKLTLRVIKKKLYLCMCSINALEAIRFYVSFACSFAFA 225 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEA 268 + + G A+ + I RDE+LHLN ++N ++P + E K R + A Sbjct: 226 ERDLLEGNAKIIKLIARDEALHLNSTQQILNIWADGKDDPEMAEIAIECHAKGRDIFLTA 285 Query: 269 TLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 E +A G +GLN QY+++I+N R IG E F+ NP PW++ Sbjct: 286 AAQEKEWAAYLFKDGSMIGLNEVILCQYVEYISNVRMQAIGYEAPFEIKNNPIPWIN 342 >gi|261822457|ref|YP_003260563.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium wasabiae WPP163] gi|261606470|gb|ACX88956.1| ribonucleotide reductase [Pectobacterium wasabiae WPP163] Length = 376 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I +A Y +L + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMT 165 Query: 174 -----FTTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 GT + + + + L++ + E + FY FA + M Sbjct: 166 SYYHLLGEGTHQVNGKTVTVNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + +E QQ+ + A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 EWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWIN 337 >gi|227114436|ref|ZP_03828092.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 376 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 127/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +II ++ D +F+ I +A Y +L + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMT 165 Query: 174 -----FTTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 GT + + + + L++ + E + FY FA + M Sbjct: 166 SYYHLLGEGTHQVNGKTVTVNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + +E QQ+ + A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 EWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWIN 337 >gi|320538993|ref|ZP_08038668.1| putative ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Serratia symbiotica str. Tucson] gi|320030926|gb|EFW12930.1| putative ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Serratia symbiotica str. Tucson] Length = 376 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 128/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSCDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ +F E +HS ++ +II ++ D +F+ Y ++ +T Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEEILKRAKDISGYYDDLIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + ++ + T + ++ L + E + FY FA + Sbjct: 166 SYYHLLGEGRHQVNGKTVTVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + E QQ+ + A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I+N R +GLE FK NP PW++ Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYVEYISNIRMQAVGLELPFKTRSNPIPWIN 337 >gi|119944866|ref|YP_942546.1| ribonucleotide-diphosphate reductase subunit beta [Psychromonas ingrahamii 37] gi|119863470|gb|ABM02947.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Psychromonas ingrahamii 37] Length = 381 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 68/297 (22%), Positives = 128/297 (43%), Gaps = 29/297 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDFLN---LPDHEQHIFISNLKYQTLLDSIQGRSPNIALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +I+ +L + E+F I +A + + Y + + Sbjct: 106 ETWIETWSFSETIHSRSYTHILRNLFTEPAEIFEDIVTNVEIQKRATDISGYYDALIHAT 165 Query: 173 SFTT--GTKDADQEFL---------------QDLFVFYV---VFEGMWFYTGFAQILSLG 212 F G + D +++ + L++ E + FY FA + Sbjct: 166 QFMQLHGLEQTDIDYINLENQVEKLNLRAIKKKLYLCICSVNALEAIRFYVSFACSFAFA 225 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWTKEFQ--QKSRTMLHEA 268 + + G A+ + I RDE+LHLN ++N ++P + + + R + +A Sbjct: 226 ERDLLEGNAKIIKLIARDEALHLNSTQQILNLWADGKDDPEMAEIAIECFAEGREIFLQA 285 Query: 269 TLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 E +A G +GLN QY+++IAN R IG P F+ NP PW++ Sbjct: 286 AQQEKDWAKYLFKDGSMIGLNEQILSQYVEYIANLRMQAIGYAPEFEVKSNPIPWIN 342 >gi|47213107|emb|CAF89527.1| unnamed protein product [Tetraodon nigroviridis] Length = 369 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y W+ Y A + W EV + DL W+S L DDER I L FFA+S+ Sbjct: 14 IFPIQYQDLWQMYKKAEASFWTAEEVDLSKDLQHWES---LKDDERFFISHVLAFFAASD 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + + E R + Q E +HS + +I + + E LFN Sbjct: 71 GIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIE 130 Query: 151 EVPSITAKANWALQY 165 +P + KA+WAL + Sbjct: 131 TLPCVKKKADWALNW 145 >gi|307257037|ref|ZP_07538813.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864521|gb|EFM96428.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 376 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 124/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++S L + E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSQDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165 Query: 174 -----FTTGTKDAD----QEFLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217 + G D Q L++L + V E + FY FA + M Sbjct: 166 QLYTLYGEGCYTVDGKQYQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE LHL +++N I ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEYLHLTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN +Y+++I N R +GL F NP PW++ Sbjct: 286 EWAAYLFKDGSMIGLNEDILVKYVEYITNIRMQAVGLPRPFATASNPIPWIN 337 >gi|307129979|ref|YP_003881995.1| Ribonucleotide reductase of class Ia (aerobic), subunit beta [Dickeya dadantii 3937] gi|306527508|gb|ADM97438.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Dickeya dadantii 3937] Length = 376 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ AF E +HS ++ +II ++ D +F+ Y E+ +T Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISGFYDELIELT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + + T ++ + + ++ L + E + FY FA + Sbjct: 166 SYYHLLGEGTHQVNGKTVNINVYELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E QQ+ + A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRAGQDDPEMAKIAEECQQQCYDLFVLAAQQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETRTNPIPWIN 337 >gi|284504289|ref|YP_003407004.1| ribonucleotide reductase small chain [Marseillevirus] gi|282935727|gb|ADB04042.1| ribonucleotide reductase small chain [Marseillevirus] Length = 280 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 66/281 (23%), Positives = 123/281 (43%), Gaps = 24/281 (8%) Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTF 131 LT E+ +K L FFA + +V N+V + +S+ E + + QA E +H+ T+ Sbjct: 7 LTKGEKKFVKLELAFFAQFDGIVVENLVRNFQQEVSSYAKEIEWFYILQAANELIHNETY 66 Query: 132 QYIITSL---GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF-LQ 187 +I +L + + PSI ANW ++ D+ L Sbjct: 67 MNLIDNLLPSPKKREKALDAISNYPSIRLIANWVERWM---------------DRRIPLP 111 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + + EG+ F FA I N++ G+ + ++I +DE+LH F V I + Sbjct: 112 ERIIAFAALEGVIFTGSFAAIHYFTITNRLKGLRKANEWISKDEALHQRFAEAVYRYI-V 170 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 + + + Q++ + +L A + H+ + V ++A YM+ A+ + Sbjct: 171 DVIKAFPRVSQERVQEILGSAIDAVSPFIHDCLRFKNVNIDAERMIGYMKNAADGLAFSL 230 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 G E F +++ +M +I + + NFFE V +Y +G E Sbjct: 231 GYEKFFN-SDSSLDYML-LIGMDNKTNFFEEVVADYAKGLE 269 >gi|322514736|ref|ZP_08067762.1| ribonucleotide-diphosphate reductase beta subunit [Actinobacillus ureae ATCC 25976] gi|322119331|gb|EFX91447.1| ribonucleotide-diphosphate reductase beta subunit [Actinobacillus ureae ATCC 25976] Length = 376 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 125/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++S L + E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSQDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165 Query: 174 -----FTTGTKDAD----QEFLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217 + G D Q L++L + V E + FY FA + M Sbjct: 166 QLYTLYGEGCYTVDGKQYQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE LHL +++N + ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEYLHLTGTQNMLNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN +Y+++I N R +GL F + NP PW++ Sbjct: 286 EWAAYLFKDGSMIGLNEDILVKYVEYITNIRMQAVGLPRPFATSSNPIPWIN 337 >gi|284009345|emb|CBA76525.1| ribonucleoside-diphosphate reductase 1, beta subunit [Arsenophonus nasoniae] Length = 378 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 67/292 (22%), Positives = 131/292 (44%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 51 WRPEEIDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 107 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQ-- 164 ++ +F E +HS ++ +II ++ + +F+ + + I+A + ++ Sbjct: 108 ETWVETWSFSETIHSRSYTHIIRNIVNEPSIIFDDIVTNNEILKRAKDISAYYDDLIELT 167 Query: 165 -YTQTLSSPSFTTGTKD---ADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Y L S T K + E + L++ + E + FY FA + M Sbjct: 168 SYYHLLGEGSHTINGKSVIISLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 227 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + KE ++ + +A E Sbjct: 228 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGQDDPEMAIIAKECEEACYRLFVQAAEQEK 287 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 288 EWAEYLFSGGSMIGLNKDILCQYIEYITNIRMQAVGLKLPFETRSNPIPWIN 339 >gi|242238482|ref|YP_002986663.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya dadantii Ech703] gi|242130539|gb|ACS84841.1| ribonucleotide reductase [Dickeya dadantii Ech703] Length = 376 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 121/292 (41%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEG----------ELFNMYREVPSITAKANWAL 163 ++ +F E +HS ++ +II ++ D E+ R++ + Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRARDISGFYDELIELT 165 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF------EGMWFYTGFAQILSLGRANKM 217 Y L + K D Q Y+ E + FY FA + M Sbjct: 166 SYYHLLGEGTHQVNGKTVDINVYQLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLW--TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + +E QQ+ + A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMLNLMRSGQDDPEMAKVAEECQQQCYDLFVMAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 EWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETRTNPIPWIN 337 >gi|293392273|ref|ZP_06636607.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952807|gb|EFE02926.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 376 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 125/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYAA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ + +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNNPSIVFDDIVTNEEIIKRARDISSYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT D + + L++ + E + FY FA + M Sbjct: 166 QLYSLYGEGTYTVDGKECVVSLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL ++N + ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAKIAEECKQEAYDLFLAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 DWADYLFKDGSMIGLNKDILVQYVEYITNIRMQAVGLPLPFQARSNPIPWIN 337 >gi|119472403|ref|ZP_01614521.1| ribonucleotide-diphosphate reductase beta subunit [Alteromonadales bacterium TW-7] gi|119444925|gb|EAW26223.1| ribonucleotide-diphosphate reductase beta subunit [Alteromonadales bacterium TW-7] Length = 376 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 72/292 (24%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSKDRLDFQA---LPEHEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-SSP 172 ++ AF E +HS ++ +II ++ +F+ I+ +A+ Y L +S Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNVTQSPELIFDDIVSNDKISERADAVTTYYDDLINSV 165 Query: 173 SFTTGTKDADQEF-----LQDLF----VFYV------VFEGMWFYTGFAQILSLGRANKM 217 S + E + +LF Y+ + E + FY FA + M Sbjct: 166 SLYNLYGEGKHEINGKTVVVNLFELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWTKEFQQKSRT--MLHEATLLEI 273 G A+ + I RDE+LHL+ ++N Q ++P + Q + M +A E Sbjct: 226 EGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQCRDEAIKMFVQAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R IGL F+ NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGLPAQFENNSNPIPWIN 337 >gi|33152746|ref|NP_874099.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus ducreyi 35000HP] gi|33148970|gb|AAP96488.1| ribonucleoside-diphosphate reductase, beta chain [Haemophilus ducreyi 35000HP] Length = 376 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 71/292 (24%), Positives = 123/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSQDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISCYYDDLIRDS 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + GT D + + L++ + V E + FY FA + M Sbjct: 166 QLYTLYGEGTYQVDGKACAVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE LHL ++N I ++P + E QQ++ + A E Sbjct: 226 EGNAKIIKFIARDEYLHLAGTQQMLNIIASGQDDPEMAEIAIECQQEAYDLFVAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN +Y+++I N R +GL F NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKEILVKYVEYITNIRMQSVGLPLPFATQSNPIPWIN 337 >gi|27904669|ref|NP_777795.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38605263|sp|Q89AS5|RIR2_BUCBP RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|27904066|gb|AAO26900.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 376 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 122/292 (41%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ L E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDLSRDYIDFQ---NLPQHEKHIFVSNLKYQTLLDSIQGRSPNIALLPIVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ +F+ + +I +A +Y L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIINTPSLIFDDIIDNKNIANRAKDIAKYYDDLIELT 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F G + E + L++ + E + FY FA + KM Sbjct: 166 SYWHLFGEGKHTINGKKIKIDLHELKKKLYLCLISVNALEAIRFYVSFACSFAFAEREKM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQI----KIENPHLWTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N + E +KE ++ + + E Sbjct: 226 EGNAKIIRLIARDEALHLTSTQHILNILHNDKNNEGMSDISKECYEECYHLFIRVSDQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R IGL FK NP PW++ Sbjct: 286 IWAKYLFQNGSMLGLNQEILSQYIEYITNIRMKAIGLPSPFKILSNPIPWIN 337 >gi|307244651|ref|ZP_07526755.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus stomatis DSM 17678] gi|306492032|gb|EFM64081.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus stomatis DSM 17678] Length = 328 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 74/298 (24%), Positives = 127/298 (42%), Gaps = 25/298 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P EVP+ D+ W L++ ER++ KR L ++ N+ + ++ N + Sbjct: 39 WLPEEVPISKDIPSWSQ---LSESERVLYKRVLAGLTLLDTKQGNDGIPSMMELTENFQR 95 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWAL-QYTQTL 169 + L E +H+ ++ I T+L L + E+ +++ E P + KA L QY T Sbjct: 96 KAVLSFMGTMEEIHAKSYSSIFTTL-LSKQEINDLFVWIEEEPLLQNKAKLVLRQYKNTH 154 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + + V E FY+GF L L KM+ E I+R Sbjct: 155 TPKGLYMSMATS------------VFLESFLFYSGFFYPLFLAGQGKMISSGEIISLILR 202 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DESLH + I ++ Q K H K E ++K ++L E L+E + + GL Sbjct: 203 DESLHGKY-IGLLAQEKFNEFHYDDKNELKEKVYSLLKE--LMENEEKYTKLLYEGSGLE 259 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 ++++ AN +G E +K ++ + K +FF T+ YQ+G Sbjct: 260 EQVI-NFLKYNANTALTNMGFEEFYKVEPVNAIVLNGLSTETKTHDFFSTKGNGYQKG 316 >gi|289423472|ref|ZP_06425274.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus anaerobius 653-L] gi|289156106|gb|EFD04769.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus anaerobius 653-L] Length = 337 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 74/305 (24%), Positives = 127/305 (41%), Gaps = 39/305 (12%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P EVP+ D+ W LT+ ER++ KR L ++ N+ + ++ N + Sbjct: 45 WLPEEVPISKDIPSWAE---LTESERILYKRVLAGLTLLDTKQGNDGIPSMMDLTENFQR 101 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLS 170 + L E +H+ ++ I T+L L + E+ +++ E P + KA L+ + + Sbjct: 102 KAVLSFMGTMEEIHAKSYSSIFTTL-LSKHEIDDLFLWIEEEPLLQNKAKIVLRQYKNVE 160 Query: 171 SPS---FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 P + T V E FY+GF L L KM+ E I Sbjct: 161 DPKSLYMSMATS--------------VFLESFLFYSGFFFPLYLAGQGKMIASGEIISLI 206 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT------LLEIAYAHETMP 281 +RDESLH + I ++ Q K+ +EF R L +A L+E + M Sbjct: 207 LRDESLHGKY-IGLLAQEKL-------REFSYDDRNELKDAVYRLLKELMENEEKYTRML 258 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 +GL ++++ AN +G E +K ++ + K +FF T+ Sbjct: 259 YEGLGLEDQVI-NFLRYNANSALVNLGFEEFYKVEPVNAIVLNGLSTETKTHDFFSTKGN 317 Query: 342 EYQQG 346 YQ+G Sbjct: 318 GYQKG 322 >gi|238920521|ref|YP_002934036.1| ribonucleotide-diphosphate reductase subunit beta [Edwardsiella ictaluri 93-146] gi|238870090|gb|ACR69801.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Edwardsiella ictaluri 93-146] Length = 376 Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 124/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVTDPSLVFDDIVSNEEILKRARDISAYYDDLIETT 165 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 GT + +E + L++ + E + FY FA + M Sbjct: 166 GYYHLLGEGTHQINGKPVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E + + +A E Sbjct: 226 EGNAKIIRLIARDEALHLTGTQHILNLMRAGQDDPEMAEIATECASQCYDLFVQAAQQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 286 EWAGYLFRDGSMIGLNRDILCQYVEYITNIRMQAVGLPLPFETRSNPIPWIN 337 >gi|217071966|gb|ACJ84343.1| unknown [Medicago truncatula] Length = 206 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 6/141 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y A + W EV + D+ W + L+D E+ I L FFA+S+ Sbjct: 31 MFPVRYKQLWEMYKKAEASFWTAEEVDLSYDVQHWAT---LSDSEKHFISHVLAFFATSD 87 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+ + PE R + Q E +HS + ++ + D E LFN Sbjct: 88 GIVLENLAARFLNDVQIPEARAFYGFQIAIENIHSEMYSLLLETYIKDSREKHKLFNAIE 147 Query: 151 EVPSITAKANWALQYTQTLSS 171 +P + KA WAL + + +S Sbjct: 148 NLPCVARKAEWALSWINSSTS 168 >gi|212712302|ref|ZP_03320430.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM 30120] gi|212685048|gb|EEB44576.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM 30120] Length = 380 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L D E+ + NL + +S+ + +A +S PE Sbjct: 53 WRPEEVDVARDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPEL 109 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A Y TL + Sbjct: 110 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTLIEMT 169 Query: 174 -----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F GT + + + L++ + E + FY FA + M Sbjct: 170 NYYHMFGEGTHTFEGKEITVSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 229 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLWTKEFQQKSRT--MLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + + + + +A E Sbjct: 230 EGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAECEEECYRLFVDAAEQEK 289 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A +G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 290 EWAEYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFEARSNPIPWIN 341 >gi|325677552|ref|ZP_08157215.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] gi|325551623|gb|EGD21322.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] Length = 322 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 72/304 (23%), Positives = 124/304 (40%), Gaps = 28/304 (9%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W+P ++P+ +DLA W + LTD ER M R ++ A +A+ Sbjct: 31 GNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGLTLLDTAQATVGAVAMIADAVT 87 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQT 168 P L AF E+VH+ ++ I ++L F P + KA + Y + Sbjct: 88 PHEEAVLTNMAFMESVHAKSYSSIFSTLCSTRQIDAAFEWSERNPHLQRKAQIVVDYYRG 147 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 + + + V+ E FY+GF + K+ A+ + I+ Sbjct: 148 DDALARKAAS---------------VMLESFLFYSGFYLPMYWASHGKLTNTADLIRLII 192 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYAHETMPKGFVGL 287 RDE++H + I + +E ++ ++ L E E+AYA + + VG Sbjct: 193 RDEAVH-GYYIGYKCRKALERLDASARDAHRRYTYALLETLYANEVAYAADLYDE--VGW 249 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLKKEKN--FFETRVTEYQ 344 A YM+F AN+ +G EP+F+ +E P + +D +N FF + Y Sbjct: 250 TA-EVVSYMRFNANKALANLGYEPMFRASECQVNPAILSALDPGAGENHDFFSGSGSAYV 308 Query: 345 QGAE 348 G + Sbjct: 309 IGKQ 312 >gi|270262779|ref|ZP_06191050.1| ribonucleoside-diphosphate reductase 1 subunit beta [Serratia odorifera 4Rx13] gi|270043463|gb|EFA16556.1| ribonucleoside-diphosphate reductase 1 subunit beta [Serratia odorifera 4Rx13] Length = 359 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 32 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 88 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ +F E +HS ++ +II ++ D +F+ Y ++ +T Sbjct: 89 ETWVETWSFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEEILKRAKDISGYYDDLIEMT 148 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + T ++ + T + A ++ L + E + FY FA + Sbjct: 149 GYYHLLGEGTHQVNGKTVTVNLR-ALKKQLYICLMSVNALEAIRFYVSFACSFAFAEREL 207 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + E QQ+ + A E Sbjct: 208 MEGNAKIIKLIARDEALHLTGTQHILNLMRSGADDPEMAEIAVECQQQCYDLFVLAAQQE 267 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F+ NP PW++ Sbjct: 268 KEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLGLPFETRSNPIPWIN 320 >gi|317492553|ref|ZP_07950980.1| ribonucleotide reductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919303|gb|EFV40635.1| ribonucleotide reductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 376 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 126/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN------------- 160 ++ +F E +HS ++ +II ++ D +F+ I +A Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEEILKRAKDISGYYDDLIEMS 165 Query: 161 --WAL--QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 W L + T ++ + T + ++ L + E + FY FA + Sbjct: 166 SYWHLLGEGTHNVNGKTVTVNLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLW--TKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + E +Q+ + A E Sbjct: 225 MEGNAKIIRLIARDEALHLTGTQHILNLMRSGQDDPEMAEVAVECEQQCYDLFVLAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 285 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFQTRSNPIPWIN 337 >gi|295134784|ref|YP_003585460.1| ribonucleotide reductase [Zunongwangia profunda SM-A87] gi|294982799|gb|ADF53264.1| ribonucleotide reductase [Zunongwangia profunda SM-A87] Length = 324 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 74/322 (22%), Positives = 139/322 (43%), Gaps = 32/322 (9%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y + + + W+ +EV D+ + S LT E+ ++K++L A E Sbjct: 12 PFEYPGVLDFTDAINQSFWVHSEVDFTADVQDFHSH--LTTGEKDVVKKSLLAIAQIEVA 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + +Y+HL PE A E HS + ++ LG + F EVP+I Sbjct: 70 V-KSFWGDLYKHLPKPEFNGLGSTFAECEFRHSQAYSRLLEVLGYNNE--FAKVVEVPAI 126 Query: 156 TAKANW---ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + + AL++T+ + ++++ L +F ++ E + ++ FA +LS Sbjct: 127 KKRIAYLTEALEHTKA-----------EDPKDYVSSLILFSILIENVSLFSQFAIVLSFN 175 Query: 213 R-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK-----SRTMLH 266 R M ++ + DE +H N GI +INQI+ E P + +E +K +R++ Sbjct: 176 RFKGVMKNVSNIIAWTSVDEQIHANAGIYIINQIREEYPDYFNEEMTRKLTDVVTRSIEV 235 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323 E +L+ + + + +N + +M+F + IGL + T P W Sbjct: 236 EEEILDWIFENGQLE----NINKKNLMDFMKFRLDDSLKSIGLPKQYNITAAEYQPMLWF 291 Query: 324 SEVIDLKKEKNFFETRVTEYQQ 345 E + +FF R +Y + Sbjct: 292 EEEVFANSLDDFFARRPVDYTK 313 >gi|326632980|ref|YP_004306569.1| putative aerobic ribonucleoside diphosphate reductase small subunit [Enterobacteria phage SPC35] gi|321272174|gb|ADW80066.1| putative aerobic ribonucleoside diphosphate reductase small subunit [Enterobacteria phage SPC35] Length = 381 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/298 (23%), Positives = 119/298 (39%), Gaps = 27/298 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W TE+ ++ D W L + + + NL + ++S ++ AI +S PE Sbjct: 47 WTETEISLEADKKQW---GNLPREIQEITLLNLAWQTQTDSFISRAPEAAIMPLVSRPEL 103 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL---------- 163 L + ++ E +HS + II ++ D E + + A+ ++ Sbjct: 104 EGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAFARIADSVELFDELYQLG 163 Query: 164 QY---------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 QY T F ++ + L F Y + E M FY FA +L Sbjct: 164 QYFIAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGL-EAMQFYASFACTFALAEN 222 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 + + GIA+ Q I +DE+LH +I + + E K+ L + EI Sbjct: 223 DILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVNEAVAKAPAQLLKTLKTEIE 282 Query: 275 YAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFKYTENPFPWMSEVID 328 + H + +GLNA E+Y+ F+ IG++ L T+NP PW+ +D Sbjct: 283 WGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVKWPSHLPVITKNPIPWIMNWLD 340 >gi|261868068|ref|YP_003255990.1| ribonucleoside-diphosphate reductase subunit beta [Aggregatibacter actinomycetemcomitans D11S-1] gi|293389919|ref|ZP_06634253.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|261413400|gb|ACX82771.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D11S-1] gi|290950453|gb|EFE00572.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 329 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 70/318 (22%), Positives = 139/318 (43%), Gaps = 19/318 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ P +Y E + +++W+ TE D+ +++ ++D ER +I + + + Sbjct: 15 EIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDFRTH--ISDVERAVITKTMLAISQI 72 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 E V +Y + PE E H + +++ LGL+E +F R+ Sbjct: 73 EVSV-KRFWGNLYNYFPKPEIEDVGGSFLESEIRHKDAYSFLLEKLGLNE--MFRNVRQY 129 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +I A+ ++Y + +F + Q+F+ L +F + E + ++ F ++S Sbjct: 130 KAIMAR----IEYME-----AFMRKKDVSQQDFVLSLVMFSLFVEHISLFSQFVIMMSFN 180 Query: 213 R-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 + N GI+ + ++E +H FGI + + ++ E P L+T EF + + + +A Sbjct: 181 KHKNLFKGISNAVEATSKEEEIHGRFGISLYHLLREEQPELFTDEFYAELKELAEQAFNA 240 Query: 272 EIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVI 327 E A G + L+ + E Y+ N +GLEP++ + W I Sbjct: 241 EKAILDWIFEDGELSFLSKATVENYIANRYNNSLVTLGLEPIYNISPAQLKETEWFDIEI 300 Query: 328 DLKKEKNFFETRVTEYQQ 345 KE +FF R T+Y + Sbjct: 301 LSTKETDFFNKRSTDYSK 318 >gi|299779174|ref|YP_003734368.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage IME08] gi|298105903|gb|ADI55547.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage IME08] Length = 389 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/298 (23%), Positives = 133/298 (44%), Gaps = 26/298 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L ++ + NL + + +S+ A+ +S+P Sbjct: 58 WRPEEVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQGRAPSAALQALISDPSL 114 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +I+ +L D ++F+ +I +A +Y + + Sbjct: 115 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDDAIMKRAESIGRYYDDVIDKT 174 Query: 174 ------------FTTGTKDADQEFLQDLFV-FYVV--FEGMWFYTGFAQILSLGRANK-M 217 F+ G K A E ++ L++ +V+ E + FY FA + + + M Sbjct: 175 RLYQNALEEYHEFSEGVKQAKYELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIM 234 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQKSRTMLHEATLLEI 273 G A+ ++I RDE LHL +I Q+++ + W K E +Q++ + E E Sbjct: 235 EGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEK 294 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVID 328 +A G GLN + ++ ++ R Q GL P+ T +P+PW+ E ++ Sbjct: 295 EWATHLFKDGTCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDAPTRHPYPWIREYLN 352 >gi|238695377|ref|YP_002922570.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage JS10] gi|220029513|gb|ACL78447.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage JS10] Length = 379 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/298 (23%), Positives = 133/298 (44%), Gaps = 26/298 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L ++ + NL + + +S+ A+ +S+P Sbjct: 48 WRPEEVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQGRAPSAALQALISDPSL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +I+ +L D ++F+ +I +A +Y + + Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDEAIMKRAESIGRYYDDVIEKT 164 Query: 174 ------------FTTGTKDADQEFLQDLFV-FYVV--FEGMWFYTGFAQILSLGRANK-M 217 F+ G K A E ++ L++ +V+ E + FY FA + + + M Sbjct: 165 RLYQNALEEYHEFSEGVKQAKYELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIM 224 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQKSRTMLHEATLLEI 273 G A+ ++I RDE LHL +I Q+++ + W K E +Q++ + E E Sbjct: 225 EGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEK 284 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVID 328 +A G GLN + ++ ++ R Q GL P+ T +P+PW+ E ++ Sbjct: 285 EWAGHLFKDGTCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDAPTRHPYPWIREYLN 342 >gi|148653376|ref|YP_001280469.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter sp. PRwf-1] gi|148572460|gb|ABQ94519.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Psychrobacter sp. PRwf-1] Length = 377 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 127/293 (43%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L+ E+ + NL + +S+ + + + +S PE Sbjct: 49 WRPEEVDVSKDRIDY---GNLSTHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A+ Y L S Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIMENEHILQRASDIAYYYDDLYQHS 165 Query: 174 -----FTTGTKDADQE--------FLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 F GT + E + L++ + V E + FY FA + M Sbjct: 166 QLYSLFGPGTHIVNGEEKYVDLRKLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN + ++P + + + +S + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMINIMASGKDDPEMAEISAQCHNESIEIFRKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMS 324 +A G +GLN QY+++I N R +GL +F ++ NP PW++ Sbjct: 286 EWAGYLFKDGSMIGLNKDILCQYVEYITNLRMEAVGLPGIFPESKSNPIPWIN 338 >gi|76163066|gb|AAX30834.2| SJCHGC08068 protein [Schistosoma japonicum] Length = 230 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 19/181 (10%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W Y A + W EV + D W+S L ER I L FFA+S+ Sbjct: 52 LFPIEYHDIWHFYKKAVASFWTVEEVDLSKDFTHWES---LKVGERHFISYVLAFFAASD 108 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N++ + + PE R + Q E +HS + +I + D E LFN Sbjct: 109 GIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLLIDTYIKDSKERDFLFNAIS 168 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KA WAL + D+ F + L F V EG++F FA I Sbjct: 169 NLTCVAKKAQWALDW------------IGDSKSTFAERLVAFAAV-EGVFFSGSFAAIFW 215 Query: 211 L 211 L Sbjct: 216 L 216 >gi|238753722|ref|ZP_04615083.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia ruckeri ATCC 29473] gi|238707958|gb|EEQ00315.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia ruckeri ATCC 29473] Length = 376 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/292 (22%), Positives = 122/292 (41%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + N L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDY---NALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +II ++ D +F+ I +A + + Y + Sbjct: 106 ETWVETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEEILKRAKDISSYYDDLIEMT 165 Query: 173 SFTTGTKDADQEFLQDLFVFYV---------------VFEGMWFYTGFAQILSLGRANKM 217 S+ + + + V + E + FY FA + M Sbjct: 166 SYYHLLGEGNHQVNGKTVVVNLHALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E QQ+ + A E Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAVECQQQCYDLFVLAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL FK NP PW++ Sbjct: 286 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGTPFKTRTNPIPWIN 337 >gi|114563305|ref|YP_750818.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella frigidimarina NCIMB 400] gi|114334598|gb|ABI71980.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella frigidimarina NCIMB 400] Length = 376 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 124/293 (42%), Gaps = 28/293 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L + E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDKIDF---GNLPEHEQHIFLSNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYII------TSLGLDE-----------GELFNMYREVPSIT 156 ++ +F E +HS ++ +II SL D+ G++ Y ++ ++T Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNNPSLVFDDIVQNDEILKRAGDIAAYYDDLINLT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV-VFEGMWFYTGFAQILSLGRAN 215 N + T ++ T ++ + L + V E + FY FA + Sbjct: 166 QINNLLGEGTHIINGKEITVNSRILKKSLY--LCMMSVNALEAIRFYVSFACSFAFAERR 223 Query: 216 KMVGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHLW--TKEFQQKSRTMLHEATLL 271 M G A+ + I RDE+LHLN I + Q ++P + E +Q++ + +A Sbjct: 224 VMEGNAKIIRLIARDEALHLNSTQHILALMQGGKDDPEMGEIAAECKQEAYDLFVKAAEQ 283 Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 E +A G +GLN QY++FI N+R + L + NP PWM Sbjct: 284 EKEWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVHLPQPYDEQSNPLPWM 336 >gi|238788616|ref|ZP_04632408.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia frederiksenii ATCC 33641] gi|238723211|gb|EEQ14859.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia frederiksenii ATCC 33641] Length = 383 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 56 WRPEEIDVSRDRIDYQN---LPEHEKHIFISNLKYQTLLDSIQGRSPNIALLPIISIPEL 112 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +II ++ D +F+ I +A + + Y + Sbjct: 113 ETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISAYYDDLIEMT 172 Query: 173 SF----TTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 S+ GT + +E + L++ + E + FY FA + M Sbjct: 173 SYYHLLGEGTHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 232 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + +E QQ+ + A E Sbjct: 233 EGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEK 292 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F NP PW++ Sbjct: 293 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFNTRTNPIPWIN 344 >gi|12084869|ref|NP_073334.1| ribonucleotide reductase subunit 2 [Meleagrid herpesvirus 1] gi|11095873|gb|AAG30080.1|AF282130_43 UL40 ribonucleotide reductase small subunit [Meleagrid herpesvirus 1] gi|12025152|gb|AAG45778.1|AF291866_45 UL40 ribonucleotide reductase, small subunit [Meleagrid herpesvirus 1] Length = 355 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/299 (22%), Positives = 121/299 (40%), Gaps = 31/299 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109 N W TE + DDL + L++DE+ + F ++++ LV NI +L+++ + Sbjct: 75 NRWTETEFVIADDL---EDVGKLSEDEKNFYRFLFTFLSAADDLVNLNIDSLLSLF---T 128 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG----ELFNMYREVPSITAKANWALQY 165 + Y Q EAVHS + I L ++ E P+I +K W + Sbjct: 129 QKDIHHYYFEQECIEAVHSRAYSIIQLMLFSNDQAARQEYVTSTLRSPAILSKLEWLERR 188 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 +S + + ++ ++ EG++F FA I L N V + Sbjct: 189 VAECTS--------------IAEKYILMILIEGIFFTASFAAIAYLRVNNLFVVTCQINN 234 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 I RDE++H+ + +N K + T+ EA LE + P+ Sbjct: 235 LISRDEAIHVEASCCIF-----KNYLAGPKPTTARIHTLFKEAVRLECEFLRTAAPRTSN 289 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 +N + Y+++ A+R + + P++ + P + ++ NFFE R T Y Sbjct: 290 IINIDAICSYVRYSADRLLRALDILPIYDEPKPPADFPLVLMSAASNTNFFERRNTAYS 348 >gi|163786628|ref|ZP_02181076.1| ribonucleoside-diphosphate reductase , beta subunit 1 [Flavobacteriales bacterium ALC-1] gi|159878488|gb|EDP72544.1| ribonucleoside-diphosphate reductase , beta subunit 1 [Flavobacteriales bacterium ALC-1] Length = 429 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 78/348 (22%), Positives = 148/348 (42%), Gaps = 42/348 (12%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSAC-NNHWMPTEVPMQDDLALWK 69 QA ++ N+ +KR+ L P +Y A Y+ A +++W+ +E D+ +K Sbjct: 100 QARNRKTNIFEKRI--------NLKPYEYP-ALNDYVDAIRHSYWIHSEFNFTSDIQDFK 150 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 ++ LT E+ IK + + E V + IY + PE A E H Sbjct: 151 TR--LTVVEQNAIKNTMLAISQIEVAVKS-FWGEIYNKMPKPEIGAVGATFAESEVRHHD 207 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 + +++ LGL+ F ++ P I + + Y +T + + ++E+ + + Sbjct: 208 AYSHLLEILGLNNE--FKHLKKKPVIMKR----VHYLET----ALKNAKSEDNKEYAESI 257 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 +F + E + ++ F I++ + M+ G++ + ++E++H +FGID+I IK E Sbjct: 258 LLFSLFIEHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEENIHGDFGIDIIKIIKAE 317 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEI--------AYAHETMPKGFVGLNAPSCEQYMQFIA 300 NP + E + R + EA E A E +PK + ++++ Sbjct: 318 NPTWFDAEHNEIVRELCREAFASESELVDWIFEAGELEFLPKDVIN-------EFLKNRF 370 Query: 301 NRRCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQ 345 N IG+E +F E W + I K +FF R Y + Sbjct: 371 NNSLESIGIEKVFDVDETLLTQTEWFDDEIIGTKHGDFFVKRSINYSK 418 >gi|216905873|ref|YP_002333501.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 9] gi|216410027|dbj|BAH02445.1| small subunit of ribonucleotide reductase [Equid herpesvirus 9] Length = 321 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 125/301 (41%), Gaps = 34/301 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109 N W+ T++P+ DDL K LT ER + F ++++ LV N+ + A++ + Sbjct: 40 NRWLDTDLPISDDL---KDVAKLTPAEREFYRFLFAFLSAADDLVNLNLGDLSALF---T 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + Y + Q E HS + I L L + R V SI A + L Sbjct: 94 QKDILHYYIEQESIEVTHSRVYSAI--QLMLFGNDAAARARYVASIIGDAAIK-RKVAWL 150 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + G+ + + ++ ++ EG++F + FA I L N V + I R Sbjct: 151 QAKVRECGS-------VAEKYILMILIEGLFFASSFASIAYLRTHNLFVVTCQSNDLISR 203 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETMPKGFVGL 287 DE++H I N +L E + R + EA +E + P+ L Sbjct: 204 DEAIHTR------ASCCIYNNYLGGFEKPEPKRIYELFSEAVNIECEFLLSHAPQNSHLL 257 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNFFETRVTEY 343 + Y+++ A+R +IGL PLF T P +M+ ++K NFFE R T Y Sbjct: 258 DIGEIISYVRYSADRLLGEIGLSPLFNAPKPSTSFPLAFMT----VEKHTNFFERRSTAY 313 Query: 344 Q 344 Sbjct: 314 S 314 >gi|291092706|gb|ADD74390.1| ribonucleotide reductase small subunit [uncultured virus] Length = 181 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 16/156 (10%) Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE- 144 L FFA S+ +V N+V Y + E R + QA E +H+ + +I +L +E E Sbjct: 7 LAFFAPSDGIVGENLVTRFYEMVVYTEARYFYAFQAAMENIHAEVYSQLIKTLIPNEDEQ 66 Query: 145 --LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 +F+ + P IT K WA Q+ + + F++ L F VV EG+ F Sbjct: 67 RSIFSSFMTTPGITEKTRWAKQWLE------------RENLSFVERLVAFAVV-EGLLFS 113 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 FA I L + M G+ + I RDE LH +F Sbjct: 114 GSFASIFWLKKRGLMHGLTFSNELISRDEGLHCDFA 149 >gi|296082342|emb|CBI21347.3| unnamed protein product [Vitis vinifera] Length = 227 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 6/108 (5%) Query: 244 QIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 QI IEN H L K +++ + ++ ++ +E + + +P VG+N+ QY++F+ Sbjct: 102 QIAIENIHSEILLRNKLSEERVKAIVADSVDIEREFVCDALPCALVGMNSALMSQYIEFV 161 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 A+R +G ++ + NPF WM E+I L+ + NFFE RV EYQ+ + Sbjct: 162 ADRLLGALGYGKMYNVS-NPFDWM-ELISLQGKTNFFEKRVGEYQKAS 207 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ ++ +L D + P++Y WE Y A + W EV + D W++ LT D Sbjct: 3 SIPEEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWEN---LTSD 59 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 E+ I L FFA+S+ +V N+ + + E R + Q E +HS Sbjct: 60 EKHFISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEIL 113 >gi|325103985|ref|YP_004273639.1| ribonucleotide reductase [Pedobacter saltans DSM 12145] gi|324972833|gb|ADY51817.1| ribonucleotide reductase [Pedobacter saltans DSM 12145] Length = 324 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 18/297 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ +E+ D + S L+ +E+ IKR+L A E V + +Y HL PE Sbjct: 30 WVHSEIDFTADTQDFHSH--LSTNEKESIKRSLLAIAQIEVNVKS-FWGNLYNHLPKPEF 86 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 A E HS + ++ LG + F E+P I + + S + Sbjct: 87 NGLGSTFAECEFRHSEAYSRLLEVLGYNNE--FEKVIEIPVIKKRIAYL--------SNA 136 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDES 232 D + +++ L +F ++ E + ++ FA ILS R M ++ + DE Sbjct: 137 LKDTKSDDKKAYIKSLILFTILIENVSLFSQFAIILSFTRFQGVMKNVSNIIAWTSIDEQ 196 Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291 LH N GI +IN+IK E P + +Q+ ++ E+ +E G +N Sbjct: 197 LHANAGIYIINKIKEEFPEYIDEAVEQEIYDIVTESINIEDEILGWIFENGDLEHINRRD 256 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +M++ + QIG + L+ +E +P W E I +FF R EY + Sbjct: 257 LLNFMKYRIDVSLQQIGFKKLYNVSETEYSPMVWFEEEIFANSLDDFFAKRPVEYTK 313 >gi|238751211|ref|ZP_04612705.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia rohdei ATCC 43380] gi|238710485|gb|EEQ02709.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia rohdei ATCC 43380] Length = 399 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 128/292 (43%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 72 WRPEEIDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 128 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +II ++ D +F+ I +A + + Y + Sbjct: 129 ETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMT 188 Query: 173 SF----TTGTKDADQEFL--------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 S+ GT + + + + L++ + E + FY FA + M Sbjct: 189 SYYHLLGEGTHQVNGKTVVVNLHALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELM 248 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ ++P + E QQ+ + A E Sbjct: 249 EGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAVECQQQCYDLFVLAAEQEK 308 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL FK NP PW++ Sbjct: 309 EWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGTPFKTRTNPIPWIN 360 >gi|50313261|ref|YP_053065.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 1] gi|132625|sp|P28847|RIR2_EHV1B RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|42795147|gb|AAS45904.1| small subunit of ribonucleotide reductase [Equid herpesvirus 1] gi|49617004|gb|AAT67277.1| ribonucleotide reductase RR2 [Equid herpesvirus 1] Length = 321 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 124/297 (41%), Gaps = 26/297 (8%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109 N W+ T++P+ DDL K LT ER + F ++++ LV N+ + A++ + Sbjct: 40 NRWLDTDLPISDDL---KDVAKLTPAEREFYRFLFAFLSAADDLVNLNLGDLSALF---T 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + Y + Q E HS + I L L + R V SI A + L Sbjct: 94 QKDILHYYIEQESIEVTHSRVYSAI--QLMLFGNDAAARARYVASIIGDAAIG-RKVAWL 150 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + G+ + + ++ ++ EG++F + FA I L N V + I R Sbjct: 151 QAKVRECGS-------VAEKYILMILIEGLFFASSFASIAYLRTHNLFVVTCQSNDLISR 203 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETMPKGFVGL 287 DE++H I N +L E + R + EA +E + P+ L Sbjct: 204 DEAIHTR------ASCCIYNNYLGGFEKPEPKRIYELFSEAVNIECEFLLSHAPQYSHLL 257 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 + + Y+++ A+R +IGL PLF + + + ++K NFFE R T Y Sbjct: 258 DIGAIISYVRYSADRLLGEIGLSPLFNAPKPSPSFPLAFMTVEKHTNFFERRSTAYS 314 >gi|294338139|emb|CBJ93977.1| Probable ribonucleotide reductase (small subunit) [Campylobacter phage CP220] Length = 369 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 74/312 (23%), Positives = 140/312 (44%), Gaps = 33/312 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W EV D A + N L + + R L +S+ ++ I ++NPE Sbjct: 48 WQEDEVQCTKDQADF---NVLNEAMKHSYTRVLNKLIFLDSIQGRGLLQTIGSIVTNPEL 104 Query: 114 RQYLLR-QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172 + Q FE + HS ++ +I+ S+ + ++F+ E+P + L+ ++S P Sbjct: 105 EVCMTEWQRFEISRHSRSYTHILRSVYANPSKIFDESFEIPEL-------LELADSISKP 157 Query: 173 ---------SFTTGTKDADQEFLQ--DLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GI 220 + G D ++ ++ ++ V + EG+ FY+GFA I S+ + ++ Sbjct: 158 YEEAFEAVTKYHLGLIDTEEVKVKVLNMLVEINILEGVRFYSGFATIWSMHYSQGLMERT 217 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENP-----HLWTKEFQQKSRTMLHEATLLEIAY 275 + Q I RDE+LHL ++I +I +P + W + L EA E + Sbjct: 218 GKILQLICRDENLHLAITQNLI-KILSRSPEEGFINAWNSIKDNITDRYL-EAADQEFKW 275 Query: 276 AHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKEK 333 KG F+G+ + Y++++ N+R IG + +F + +NP PW+ I+ K + Sbjct: 276 IDYLFSKGAFLGMTPELAKNYIKYLINKRLKAIGFKEVFAGFNKNPIPWVETYINYDKNE 335 Query: 334 NF-FETRVTEYQ 344 E+ +T Y+ Sbjct: 336 VLPQESEITNYK 347 >gi|3183695|emb|CAA07027.1| ribonucleotide reductase small subunit [Felid herpesvirus 1] Length = 331 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 32/300 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL-SN 110 N W+ T++P+ DD+ K L++ E + F ++++ LV N+ L L + Sbjct: 50 NRWLETDLPIGDDI---KDITTLSESELDFYRFLFTFLSAADDLV--NLNLGNLSELFTQ 104 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYT 166 + Y + Q E VHS + I L + E Y + P + K W Sbjct: 105 KDILHYYIEQECIEVVHSRVYSAIQLLLFKCDAEARTAYVDSMITKPELARKVEWL---- 160 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 T+ + E + + ++ ++ EG++F FA I L N + + Sbjct: 161 ----------RTRIGECESIAEKYILMILIEGIFFVASFAAIAYLRTHNIFIVTCQTNDL 210 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 I RDE++H + N K ++ ++ EA LE + P+ Sbjct: 211 ISRDEAIHTTASCCIYNNYLPAQ----IKPSTERIHSLFREAVELECEFISTCAPRCSNL 266 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENP-FPWMSEVIDLKKEKNFFETRVTEYQ 344 LN Y+++ A+R I + P+F +P FP VI+ K NFFE T Y Sbjct: 267 LNVADICNYVRYSADRLLGIIKVAPIFNVPPPHPNFPLAFMVIE--KHTNFFEKHSTTYS 324 >gi|260768282|ref|ZP_05877216.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio furnissii CIP 102972] gi|260616312|gb|EEX41497.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio furnissii CIP 102972] gi|315179989|gb|ADT86903.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio furnissii NCTC 11218] Length = 377 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 68/293 (23%), Positives = 124/293 (42%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDYAK---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEV 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ +F E +HS ++ +II ++ D +F+ E I +A + L + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENEHIIKRAKDIAHFYDDLIQMT 165 Query: 174 -----FTTGTKDADQEFLQ-----------DLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 F GT + + E + + E + FY FA + M Sbjct: 166 NDYHRFGEGTHELNGETVHVSLKGLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLW--TKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL +IN ++ +++ +E +Q+ + +A E Sbjct: 226 EGNAKIIKLIARDEALHLTGTQHMINLLRNGMDDFEFLQIAEECKQECFDLFKQAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMS 324 +A G +GLN QY+++I N R +GL+ + T NP PW++ Sbjct: 286 EWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDAAYPSATTNPIPWIN 338 >gi|161622513|ref|YP_001595352.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage JS98] gi|160213819|gb|ABX11158.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage JS98] Length = 379 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 70/298 (23%), Positives = 132/298 (44%), Gaps = 26/298 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L ++ + NL + + +S+ A+ +S+P Sbjct: 48 WRPEEVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQGRAPSAALQALISDPSL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +I+ +L D ++F+ +I +A +Y + + Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDEAIMKRAESIGRYYDDVIEKT 164 Query: 174 ------------FTTGTKDADQEFLQDLFV-FYVV--FEGMWFYTGFAQILSLGRANK-M 217 F G K A E ++ L++ +V+ E + FY FA + + + M Sbjct: 165 RLYQNALEEYHEFGEGVKQAKYELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIM 224 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQKSRTMLHEATLLEI 273 G A+ ++I RDE LHL +I Q+++ + W K E +Q++ + E E Sbjct: 225 EGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEK 284 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVID 328 +A G GLN + ++ ++ R Q GL P+ T +P+PW+ E ++ Sbjct: 285 EWAAHLFKDGTCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDAPTRHPYPWIREYLN 342 >gi|270339459|ref|YP_003331539.1| ribonucleotide reductase subunit 2 [Felid herpesvirus 1] gi|254940175|gb|ACT88318.1| ribonucleotide reductase subunit 2 [Felid herpesvirus 1] Length = 331 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 70/300 (23%), Positives = 119/300 (39%), Gaps = 32/300 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL-SN 110 N W+ T++P+ DD+ K L++ E + F ++++ LV N+ L L + Sbjct: 50 NRWLETDLPIGDDI---KDVTTLSESELDFYRFLFTFLSAADDLV--NLNLGNLSELFTQ 104 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYT 166 + Y + Q E VHS + I L + E Y + P + K W Sbjct: 105 KDILHYYIEQECIEVVHSRVYSAIQLLLFKCDAEARTAYVDSMITKPELARKVEW----- 159 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 T+ + E + + ++ ++ EG++F FA I L N + + Sbjct: 160 ---------LRTRIGECESIAEKYILMILIEGIFFVASFAAIAYLRTHNIFIVTCQTNDL 210 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 I RDE++H + N K ++ ++ EA LE + P+ Sbjct: 211 ISRDEAIHTTASCCIYNNYLPAQ----IKPSTERIHSLFREAVELECEFISTCAPRCSNL 266 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENP-FPWMSEVIDLKKEKNFFETRVTEYQ 344 LN Y+++ A+R I + P+F +P FP VI+ K NFFE T Y Sbjct: 267 LNVADICNYVRYSADRLLGIIKVAPIFNVPPPHPDFPLAFMVIE--KHTNFFERHSTTYS 324 >gi|170017903|ref|YP_001728822.1| ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20] gi|169804760|gb|ACA83378.1| Ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20] Length = 324 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 71/278 (25%), Positives = 117/278 (42%), Gaps = 33/278 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ ++D ER + G + ++L + + + Sbjct: 25 TWEK---LTQQFWLDTRIPISNDLRTWRGN--MSDQERQTLNLVFGGLTTLDTLQSQDGM 79 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 ++ + N + L F E+VH+ ++ I +L N E+ +I A + Sbjct: 80 ASLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETL--------NEKSEIEAIFDWADS 131 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + TGT + + V E FY+GF L NKM+ Sbjct: 132 NEFLQYKANRINDIYQTGTPLEKK-------IASVFLETFLFYSGFYTPLYFLGHNKMLN 184 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I QI P + Q +L+E E Y HE Sbjct: 185 VAEIIKLIIRDESVHGTY-IGYKFQIGFNKLPESESTALQSWMYDLLYELYENEEKYTHE 243 Query: 279 TMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313 + EQ + F+ AN+ +G EP+F Sbjct: 244 LYD------DLGWTEQVLTFLRYNANKALMNLGQEPMF 275 >gi|157371509|ref|YP_001479498.1| ribonucleotide-diphosphate reductase subunit beta [Serratia proteamaculans 568] gi|157323273|gb|ABV42370.1| Ribonucleoside-diphosphate reductase [Serratia proteamaculans 568] Length = 376 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 66/293 (22%), Positives = 125/293 (42%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ +F E +HS ++ +II ++ D +F+ Y ++ +T Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISGYYDDLIEMT 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + + T ++ + T + ++ L + E + FY FA + Sbjct: 166 GYYHLLGEGTHQVNGKTVTVTLRALKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 224 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + E QQ+ + A E Sbjct: 225 MEGNAKIIKLIARDEALHLTGTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R +GL F NP PW++ Sbjct: 285 KEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLGLPFATRSNPIPWIN 337 >gi|319954718|ref|YP_004165985.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237] gi|319423378|gb|ADV50487.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237] Length = 424 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 76/342 (22%), Positives = 153/342 (44%), Gaps = 30/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 Q+ +++ N+ +KR+ L P +Y +E + +++W+ +E D+ +K+ Sbjct: 95 QSQKRKSNIFEKRI--------NLKPYEYPELYEYVPAIRHSYWIHSEFNFTSDIQDFKT 146 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 + LTD E+ IK + + E V IY + PE A E H+ Sbjct: 147 R--LTDTEQSAIKNTMLAISQIEVAV-KGFWGDIYHKMPKPEIGSVGATFAESEVRHADA 203 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 + +++ LGL+ F ++ P+I + +QY +T + + ++++ + + Sbjct: 204 YSHLLEILGLNNE--FKNLKKKPAIMKR----VQYLET----ALKNAKSEDNKDYAESIL 253 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 +F + E + ++ F I++ + M+ G++ + ++E +H +FGID+I IK EN Sbjct: 254 LFSLFIEHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEEQIHGDFGIDIIKIIKKEN 313 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR---RCHQ 306 P + ++ + + M +A + E + KG L+ + +FI NR Sbjct: 314 PDWFDADYHKTIQQMCKDAFIAESSVVDWIFEKG--ELDFLPKDVVNEFIKNRFNNSLES 371 Query: 307 IGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQ 345 IG+E +F+ E W + I K +FF R Y + Sbjct: 372 IGIEKIFEVNEELIAETEWFDDEIIGTKHGDFFVKRSINYSK 413 >gi|82492124|gb|ABB77921.1| ribonucleotide reductase beta chain [Environmental halophage 1 AAJ-2005] Length = 358 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 71/331 (21%), Positives = 137/331 (41%), Gaps = 22/331 (6%) Query: 22 KRMLNARSDV----NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 K +++SD+ L P +Y + + N++W+ E D+ ++ T Sbjct: 28 KDDTDSQSDIFTARQHLKPYEYTDFLDYVDAVRNSYWVHDEFNFDGDIQDYRVNT--TPA 85 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ IKR + A E V IY + E + A E H + +++ Sbjct: 86 EQTTIKRTMLAIAQIEVQV-KTFWSDIYEDMPKAEVGNVGMTFAESEVRHMDAYSHLLDV 144 Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 LG+++ F EVP++ + + +Y + G+ + QE + + +F E Sbjct: 145 LGIEDE--FEQITEVPAVQQRIEYLDEYLEM--------GSSENKQESVMGILMFSTFVE 194 Query: 198 GMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 + ++ F + S + K GIA + ++E +H FG +++ I+ ENP L+ + Sbjct: 195 HVSLFSQFLIMTSFDKHEKKFKGIANAVEATSKEEQIHGLFGQELVETIREENPDLFDDD 254 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 F + + +A E + G + L + +++ N+ G++P+F Sbjct: 255 FTDEIQDACQQAYEAESEILDWILEDGELDFLPREHIDAFLKDRFNQSLDNAGVDPVFDP 314 Query: 316 TENPFP---WMSEVIDLKKEKNFFETRVTEY 343 E+ W E I + KE +FF R T Y Sbjct: 315 DEDVVDETRWFDEDIMMTKENDFFSKRSTTY 345 >gi|237808189|ref|YP_002892629.1| ribonucleotide-diphosphate reductase subunit beta [Tolumonas auensis DSM 9187] gi|237500450|gb|ACQ93043.1| ribonucleotide reductase [Tolumonas auensis DSM 9187] Length = 377 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 124/293 (42%), Gaps = 25/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D +++ L E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSQDRIDYQT---LPPHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN----------WAL 163 ++ AF E +HS ++ +II ++ D +F+ I +A Sbjct: 106 ETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVVNEQIIKRAEDIAGYYDELIELT 165 Query: 164 QYTQTLSSPSFTTGTKD---ADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 QY Q L + K + +E + L++ + E + FY FA + M Sbjct: 166 QYWQLLGEGTHQVNGKTVVVSRRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIEN--PHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N ++ N P + +E + + +A E Sbjct: 226 EGNAKIIKMIARDEALHLTGTQHMLNILREGNDDPEMAEIARELHDECFALFKKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMS 324 +A G +GLN QY++FI N R +GL F +NP PW++ Sbjct: 286 EWASYLFKDGSMLGLNKDILCQYVEFITNVRMQGVGLPLAFDADRQNPLPWIN 338 >gi|255535950|ref|YP_003096321.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Flavobacteriaceae bacterium 3519-10] gi|255342146|gb|ACU08259.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Flavobacteriaceae bacterium 3519-10] Length = 324 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 71/307 (23%), Positives = 134/307 (43%), Gaps = 19/307 (6%) Query: 45 KYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 +++ A N + W+ +EV D+ ++S+ L E+ +K L A E V Sbjct: 20 QFVEAINKSFWVHSEVDFTADVQDFQSQ--LEPHEKNAVKNALLAIAQIEVSV-KTFWGN 76 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 +Y HL PE A E HS + ++ LG ++ FN E+P+I + ++ Sbjct: 77 LYNHLPKPELNGLGSTFAECEFRHSEAYSRLLEVLGYNDA--FNHVVEIPAIKKRIDFL- 133 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAE 222 + L + TT +E++ L +F ++ E + ++ FA ILS R M ++ Sbjct: 134 --SNVLKHANSTTP-----KEYVSSLLLFSILIENVSLFSQFAIILSFTRFKGYMKNVSN 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + DE +H N GI +IN+I+ E P L T + T++ + LE Sbjct: 187 IIAWTSVDEQIHANAGIYLINKIREEQPDLLTDSDIEDIYTLVDHSIELEAEILDWIFEM 246 Query: 283 GFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSEVIDLKKEKNFFET 338 G + ++ + +M++ + +IG++ + + + P W E + +FF Sbjct: 247 GEIDNVSKENLLNFMKYRVDDSLKKIGMQTRYNVSGDEYRPMVWFEEEVFANSMDDFFAK 306 Query: 339 RVTEYQQ 345 R +Y + Sbjct: 307 RPVDYTK 313 >gi|91793308|ref|YP_562959.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella denitrificans OS217] gi|91715310|gb|ABE55236.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella denitrificans OS217] Length = 376 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 123/291 (42%), Gaps = 24/291 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L + E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSRDKIDF---TALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + + I + + T Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNDEILKRAGDIAKYYDDLIHLT 165 Query: 167 QTLSSPSFTTGTKDADQEFL------QDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q + T + Q + + L++ + E + FY FA + M Sbjct: 166 QIFNLHGAGTHLIEGKQVTVNLRVLKKSLYLCMMSVNALEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFG--IDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHLN I + Q ++P + E QQ++ + ++A E Sbjct: 226 EGNAKIIRLIARDEALHLNSTQHILALMQGGKDDPEMAEIAIECQQQAYDLFYKAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +A G +GLN QY+++I N+R + L + NP PWM Sbjct: 286 EWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVHLPQPYAEISNPLPWM 336 >gi|13242410|ref|NP_077433.1| ribonucleotide reductase subunit 2 [Cercopithecine herpesvirus 9] gi|11036562|gb|AAG27191.1|AF275348_11 ribonucleotide reductase, small subunit [Cercopithecine herpesvirus 9] Length = 311 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 76/307 (24%), Positives = 129/307 (42%), Gaps = 46/307 (14%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHL 108 +N W+ T+ ++DD K LT++E K F ++++ LV NI ++ +++ Sbjct: 29 SNRWLETDFTLEDDYQYIKC---LTEEELSFYKFIFTFLSAADDLVNVNIGSLITLFKQ- 84 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS------ITAKANWA 162 + Y L Q E VHS + I L L EG++F R + I AK +W Sbjct: 85 --KDIHHYYLEQECIEVVHSRIYSQI--QLMLFEGDIFERLRYTEATIQDAYIKAKVDW- 139 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L+Y ++ G K ++ ++ EG++F + FA I V + + Sbjct: 140 LEYNVQMNP---LIGEK----------YILMIIIEGIFFTSSFAAISYFRNNGLFVVMCQ 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETM 280 I RDE++H + I N ++ KE R + EA +E + Sbjct: 187 LNDLISRDEAVHTS------ASCCIYNNYISYKEKPAIPRIHQLFMEAVNIECNFISAYA 240 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNFF 336 PK +N + QY+++ A+R I + LF + P +M+ +K NFF Sbjct: 241 PKNQRIINIDAILQYVRYNADRLLSAINIPVLFNAPAPKADFPLAFMTA----EKHTNFF 296 Query: 337 ETRVTEY 343 E T Y Sbjct: 297 ERHSTAY 303 >gi|293572347|ref|ZP_06683339.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] gi|291607581|gb|EFF36911.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] Length = 316 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 70/284 (24%), Positives = 125/284 (44%), Gaps = 42/284 (14%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A W+ T VP+ +DL W+ L+D E+ ++K+ +G A ++L + Sbjct: 18 YVWDK---ATAQFWLDTRVPVSNDLLDWRK---LSDMEKEVVKKAVGGLALLDTLQSEEG 71 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + A+ ++ + R L F E++H+ T+ I+ SL N ++++ I N Sbjct: 72 LYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISL--------NTFKDIEEIYTWMN 123 Query: 161 --WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 +Q+ + + GT + V V EG+ +Y+ F L NK+ Sbjct: 124 NDRRMQFKAKKINEIYQNGTP-------MQVKVASVFLEGILYYSNFFIPLWYRGQNKLA 176 Query: 219 GIAEQYQYIMRDESLH-----LNFGIDVINQIKI---ENPHLWTKEFQQKSRTMLHEATL 270 +AE + ++RDES+H F D N++ I EN W F L E Sbjct: 177 NLAELIKLVIRDESVHGTYLGYKFRQD-FNELSITEQENYTNWMYSF-------LEELLD 228 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 E AY E + +GL + ++++ AN+ +G + FK Sbjct: 229 NEFAYTEEVYSE--IGL-VEDIKTFVKYNANKSLQNMGFDIYFK 269 >gi|171779436|ref|ZP_02920400.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282053|gb|EDT47484.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 316 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 126/287 (43%), Gaps = 48/287 (16%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A W+ T VP+ +DL W+ L+D E+ ++K+ +G A ++L + Sbjct: 18 YVWDK---ATAQFWLDTRVPVSNDLLDWRK---LSDMEKEVVKKAVGGLALLDTLQSEEG 71 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + A+ ++ + R L F E++H+ T+ I+ SL N ++++ I N Sbjct: 72 LYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISL--------NTFKDIEEIY---N 120 Query: 161 WA-----LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 W +Q+ + + GT + V V EG+ +Y+ F L N Sbjct: 121 WMNNDRRMQFKARKINEIYQNGTP-------MQVKVASVFLEGILYYSNFFIPLWYRGQN 173 Query: 216 KMVGIAEQYQYIMRDESLH-----LNFGIDVINQIKI---ENPHLWTKEFQQKSRTMLHE 267 K+ +AE + ++RDES+H F D N++ I EN W F L E Sbjct: 174 KLANLAELIKLVIRDESVHGTYLGYKFRQD-FNELAITEQENFTNWMYSF-------LEE 225 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 E AY E + +GL + ++++ AN+ +G + FK Sbjct: 226 LLDNEFAYTEEVYSE--IGL-VEDIKTFVKYNANKSLQNMGFDIYFK 269 >gi|294338336|emb|CBJ94375.1| Probable ribonucleotide reductase (small subunit) [Campylobacter phage CPt10] Length = 369 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 76/313 (24%), Positives = 140/313 (44%), Gaps = 35/313 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W EV D A + N L + + R L +S+ ++ I ++NPE Sbjct: 48 WQEDEVQCTKDQADF---NVLNEAMKHSYTRVLNKLIFLDSIQGRGLLQTIGSIVTNPEL 104 Query: 114 RQYLLR-QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172 + Q FE + HS ++ +I+ S+ + ++F+ E+P + L+ ++S P Sbjct: 105 EVCMTEWQRFEISRHSRSYTHILRSVYANPSKIFDESFEIPVL-------LELADSISKP 157 Query: 173 ---SFTTGTK---------DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-G 219 +F TK D + L ++ + + EG+ FY+GFA I S+ + ++ Sbjct: 158 YEEAFEAVTKYHLGLIDIEDVKVKVL-NMLIEINILEGVRFYSGFATIWSMHYSQGLMER 216 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENP-----HLWTKEFQQKSRTMLHEATLLEIA 274 + Q I RDE+LHL ++I +I +P + W + L EA E Sbjct: 217 TGKILQLICRDENLHLAITQNLI-KILSRSPEEGFINAWNSIKDNITDRYL-EAADQEFK 274 Query: 275 YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKE 332 + KG F+G+ + Y++++ N+R IG + +F + +NP PW+ I+ K Sbjct: 275 WIDYLFSKGAFLGMTPELAKNYIKYLINKRLKAIGFKEVFAGFNKNPIPWVETYINYDKN 334 Query: 333 KNF-FETRVTEYQ 344 + E+ +T Y+ Sbjct: 335 EVLPQESEITNYK 347 >gi|213021870|ref|ZP_03336317.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 277 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 23/226 (10%) Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSITAKANWAL 163 AF E +HS ++ +II ++ D +F+ Y E+ +T+ + Sbjct: 14 AFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLG 73 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + T T++ + ++ ++ L E + FY FA + M G A+ Sbjct: 74 EGTHTVNGKTVVVNLRELKKKLYLCLMSVNA-LEAIRFYVSFACSFAFAERELMEGNAKI 132 Query: 224 YQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHET 279 + I RDE+LHL ++N ++ +++P + +E +Q+ + +A E +A Sbjct: 133 IRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYL 192 Query: 280 MPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 193 FRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 238 >gi|146322252|ref|YP_001174719.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis] gi|145968743|gb|ABQ00021.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis] Length = 316 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 70/284 (24%), Positives = 125/284 (44%), Gaps = 42/284 (14%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A W+ T VP+ +DL W+ L+D E+ ++K+ +G A ++L + Sbjct: 18 YVWDK---ATAQFWLDTRVPVSNDLLDWRK---LSDMEKEVVKKAVGGLALLDTLQSEEG 71 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + A+ ++ + R L F E++H+ T+ I+ SL N ++++ I N Sbjct: 72 LYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISL--------NTFKDIEEIYTWMN 123 Query: 161 --WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 +Q+ + + GT + V V EG+ +Y+ F L NK+ Sbjct: 124 NDRRMQFKAKKINEIYQNGTP-------MQVKVASVFLEGILYYSNFFIPLWYRGQNKLA 176 Query: 219 GIAEQYQYIMRDESLH-----LNFGIDVINQIKI---ENPHLWTKEFQQKSRTMLHEATL 270 +AE + ++RDES+H F D N++ I EN W F L E Sbjct: 177 NLAELIKLVIRDESVHGTYLGYKFRQD-FNELSITEQENFTNWMYSF-------LEELLD 228 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 E AY E + +GL + ++++ AN+ +G + FK Sbjct: 229 NEFAYTEEVYSE--IGL-VEDIKTFVKYNANKSLQNMGFDIYFK 269 >gi|254992907|ref|ZP_05275097.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J2-064] Length = 229 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 14/203 (6%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + Y N+W+P EV M+ D K L++ E+ +G A+ +S Sbjct: 39 IPYPSFYRAYKELSTNYWIPDEVDMKSDA---KQYPALSEQEKYAFDAIIGLLATLDS-P 94 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPS 154 + I ++++P A +E +H+ ++ Y++ S+ ++ +F + R P+ Sbjct: 95 QTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPT 154 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I + + ++ + E L + + EG+ FY+GFA +L R Sbjct: 155 IIKRNEPIMD--------AYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQ 206 Query: 215 NKMVGIAEQYQYIMRDESLHLNF 237 NKM G + +I RDE H F Sbjct: 207 NKMTGTGKIISFINRDELAHSKF 229 >gi|293374706|ref|ZP_06621014.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sanguinis PC909] gi|325840602|ref|ZP_08167083.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sp. HGF1] gi|292646620|gb|EFF64622.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sanguinis PC909] gi|325490251|gb|EGC92584.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sp. HGF1] Length = 321 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 77/307 (25%), Positives = 127/307 (41%), Gaps = 32/307 (10%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 YL W+P E+P+ +D ++W + L ++ +L +R LG ++ + I I Sbjct: 22 YLKQTEQFWLPEEIPVSEDKSIWDT---LDENIKLTYERILGGLTLLDTEQSTGIQ-KIA 77 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163 N + L A E++H+ ++ I +L E ELFN E + K + Sbjct: 78 EKSDNLFIKSILALFAGFESIHARSYSTIFQTLCTTERIEELFNWVEETKPLQEKVD--- 134 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 Q + S G D + F+ V + EG+ FY+GF L L KMV E Sbjct: 135 ---QIMRS---YYGVADKESLFMS--MVGCLCLEGICFYSGFYLPLWLAGQGKMVNSGEI 186 Query: 224 YQYIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA---HET 279 I+RDE LH G+ Q+ E + +Q++ M+ E +E+ Y+ +E Sbjct: 187 INLILRDEKLH-TVGVGFFAQQLLSEFDESIQAKLKQQAVEMMQEIYEVEVEYSKVLYEN 245 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFF 336 + Y+Q+ N + L PLF E NP ++ + K +FF Sbjct: 246 LDM------IDDVVSYIQYNVNYALQCLNLNPLFDIVESDINPIV-LNGISTETKNHDFF 298 Query: 337 ETRVTEY 343 T+ Y Sbjct: 299 STKGNGY 305 >gi|304406354|ref|ZP_07388010.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus YK9] gi|304344412|gb|EFM10250.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus YK9] Length = 318 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 73/297 (24%), Positives = 125/297 (42%), Gaps = 29/297 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+P+ DD W L+D +R + + LG +++ + I H+ + Sbjct: 28 WTDEEIPLSDDKMSWIE---LSDAQRELYMKVLGGLTLLDTIQGGVGIPKIVEHVDGLQR 84 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E +H+ ++ I T+L E +F + P + KA W Y +++ Sbjct: 85 KAVLSFMGMMEQIHAKSYSSIFTTLASTEEIDGVFAWVKTQPQLQNKAEWISVYYNNITT 144 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P + L V+ E FY+GF L L KM E I+RDE Sbjct: 145 P-----------KSLYLALAASVLLESYLFYSGFFYPLFLAGQGKMTSSGEIIDLILRDE 193 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK----GFVGL 287 S+H + V+ Q E T E + ++ T L E L++ +A+E + VGL Sbjct: 194 SIH-GLYVGVLAQ---EVYRDLTPEERGEADTELRE--LIDRLHANEEVYTKELYSGVGL 247 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 A Y+++ N+ +GL+P+F E NP + + + K+ +FF + Y Sbjct: 248 -ADEVLTYVRYNCNKGLMNLGLDPIFPEEEINPIVF-NGISTRTKQHDFFSKKGNGY 302 >gi|158518255|gb|AAC48087.2| Hypothetical protein F58F9.1 [Caenorhabditis elegans] Length = 500 Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 19/195 (9%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P+ + WE Y A W EV + D++ W+ LT DER I L FFA+S+ + Sbjct: 321 PIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWEI---LTSDERQFISSILAFFAASDGI 377 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREV 152 V N+ + E R + Q E +HS + ++ + D+ E LFN Sbjct: 378 VTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRDDAERNILFNAITTF 437 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 I AKA+W L++ ++P F + L V EG++F + FA I L Sbjct: 438 KFIKAKADWCLRWISDHNAP------------FSERLAAVAAV-EGIFFSSSFAAIFWLK 484 Query: 213 RANKMVGIAEQYQYI 227 + + G+ + I Sbjct: 485 KRGLLPGLTHSNELI 499 >gi|302321458|gb|ADL16651.1| RNR2 [Abalone herpesvirus Victoria/AUS/2007] Length = 642 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 74/306 (24%), Positives = 134/306 (43%), Gaps = 42/306 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN- 110 N W E+ DLA+W L + R IK L F A + +V AI H+SN Sbjct: 87 NQWKANEIEPSKDLAVWVD---LPEPVRKCIKGALTFVAVGDIVVKE----AIPMHMSNF 139 Query: 111 --PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 EC ++ Q E+ H + +T+ ++ EL + ++ A L+ Sbjct: 140 PLTECGKFFQEQLINESEHQKLYTKFLTTFAHNKEELETLMHAYTNVEEFA--PLKAKVD 197 Query: 169 LSSPSFTTGTKDADQEFLQ---DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 L + + +G++ A+Q Q +L F +F M TG ++ E Q Sbjct: 198 LINEIYKSGSR-AEQVLYQTVMELIGFCSLFSIMLMPTGLKTLI------------EGNQ 244 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 + DE+LH +F + N + + +K + ++ +A +EIA+A + + Sbjct: 245 SVRNDETLHGSFYAALHNIMP-------DRASPEKVKEIIVKAVEIEIAFAMSIVTEDLE 297 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTE----NPFPWMSEVIDLKKEKNFFETR 339 +N S + +++ AN C +G+EP++ ++T+ +P +M+ L+K NFFE R Sbjct: 298 HINPSSMQLHIKATANLCCEFLGVEPIYFDRWTKLPVVSPLSYMNNYETLQK-FNFFEVR 356 Query: 340 VTEYQQ 345 +Y Sbjct: 357 NMDYSH 362 >gi|30984468|ref|NP_851900.1| ribonucleotide reductase subunit 2 [Macacine herpesvirus 1] gi|28804676|dbj|BAC58080.1| ribonucleotide reductase small subunit [Cercopithecine herpesvirus 1] gi|30844282|gb|AAP41458.1| small subunit of ribonucleotide reductase [Macacine herpesvirus 1] Length = 338 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 118/299 (39%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ +E+ D + +GLTDDE + F ++++ LV N+ + Sbjct: 54 NRWLESELVFAGD---EEDVHGLTDDELNFYRFLFTFLSAADDLVTENLG-GLSGLFPQK 109 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--REV--PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y R + P+I K W Q Sbjct: 110 DILHYYVEQEAIEVVHSRVYSIIQLVLFHNNEQARREYVSRTIHHPAIRVKVEWLEARVQ 169 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 S + + F+ ++ EG++F FA I L N + + I Sbjct: 170 ACES--------------VPEKFILMILIEGIFFAASFAAIGFLRTNNLLRVTCQSNDLI 215 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K ++ + EA +EI + P L Sbjct: 216 SRDEAVHTTASCYIYNNYLGGH----RKPTAERVYRLFREAVDIEIGFIRSQAPANSRVL 271 Query: 288 NAP---SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 +A + E Y++F A+R I ++PLF + ++ +K NFFE R T Y Sbjct: 272 DAAALDAIENYVRFSADRLLVLIKMKPLFGAPAPAPSFPLSLMSTEKHTNFFECRSTAY 330 >gi|149369595|ref|ZP_01889447.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified eubacterium SCB49] gi|149357022|gb|EDM45577.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified eubacterium SCB49] Length = 424 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 69/334 (20%), Positives = 148/334 (44%), Gaps = 22/334 (6%) Query: 21 DKRMLNARSDVNQ----LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +KR ++D+ + L P +Y +E + +++W+ TE D+ +K++ L + Sbjct: 93 NKRTQERKTDIFERRISLKPYEYPQLYEYVPAIRHSYWIHTEFNFTSDIQDFKTR--LNE 150 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 ER IK N S + + ++ + PE A E H+ + +++ Sbjct: 151 VERSAIK-NTMLAISQIEVAVKSFWGDLHLRMPKPEIGAVGSTFAESEVRHADAYSHLLE 209 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 LGL++ F ++ P I + +QY ++ + D ++E+ + + +F + Sbjct: 210 ILGLNKE--FKALKKKPVIMKR----VQYLES----ALRNSKSDDNEEYAEAVLLFSLFI 259 Query: 197 EGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 E + ++ F I++ + M+ G++ + ++E +H +FGID+I +K E+P +T Sbjct: 260 EHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEEQIHGDFGIDLILILKDEHPEWFTP 319 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFK 314 E+ + + + +A E+ +G + L ++++ N+ IG+E +F Sbjct: 320 EYHENIKRLCLDAYEAEVDLVDWIFEEGELDFLPKTVINEFLKNRFNKSLESIGVEKVFD 379 Query: 315 YTENPF---PWMSEVIDLKKEKNFFETRVTEYQQ 345 E W + I K +FF R Y + Sbjct: 380 VDEALVIQTEWFDDEIIGTKHGDFFVKRSVNYSK 413 >gi|119360103|gb|ABL66780.1| At5g40942 [Arabidopsis thaliana] Length = 231 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 6/108 (5%) Query: 244 QIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 QI IEN H L TK + + + ++ +A +E + + + VG+N QY++F+ Sbjct: 103 QIAIENIHSEILLRTKFDEDRLKAIVCDAVEIEREFVCDALSCALVGMNRELMSQYIEFV 162 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 A+R +G ++ T NPF WM E+I L+ + NFFE RV EYQ+ + Sbjct: 163 ADRLLAALGCGKVYGVT-NPFDWM-ELISLQGKTNFFEKRVGEYQKAS 208 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 6/122 (4%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L D + P++Y WE Y A + W EV + D W+ N LT+DER IK Sbjct: 9 ILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTNDERHFIK 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ + E R + Q E +HS I+ DE Sbjct: 67 HVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSE----ILLRTKFDED 122 Query: 144 EL 145 L Sbjct: 123 RL 124 >gi|312137650|ref|YP_004004986.1| ribonucleoside-diphosphate reductase beta subunit nrdf [Rhodococcus equi 103S] gi|311886989|emb|CBH46298.1| ribonucleoside-diphosphate reductase beta subunit NrdF [Rhodococcus equi 103S] Length = 322 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/270 (23%), Positives = 112/270 (41%), Gaps = 25/270 (9%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 N W+P ++P+ +DLA W + LTD ER M R ++ A +A+ Sbjct: 31 GNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGLTLLDTAQATVGAVAMIADAVT 87 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQT 168 P L AF E+VH+ ++ I ++L F P + KA + Y + Sbjct: 88 PHEEAVLTNMAFMESVHAKSYSSIFSTLCSTRQIDAAFEWSERNPHLQRKAQIVVDYYRG 147 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 + + + V+ E FY+GF + ++ A+ + I+ Sbjct: 148 DDALARKAAS---------------VMLESFLFYSGFYLPMYWASHGELTNTADLIRLII 192 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQK-SRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + I + +E ++ ++ + +L E+AYA + + VG Sbjct: 193 RDEAVH-GYYIGYKCRKALERLDASARDAHRRYTYDLLETLYANEVAYAADLYDE--VGW 249 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 A YM+F AN+ +G EP+F +E Sbjct: 250 TA-EVVSYMRFNANKALANLGYEPMFPVSE 278 >gi|164688728|ref|ZP_02212756.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM 16795] gi|164602204|gb|EDQ95669.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM 16795] Length = 327 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 127/298 (42%), Gaps = 23/298 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + D+ +W L+ +ER + K+ LG ++ ANN + ++ N + Sbjct: 34 WLPEEISVSKDVKVWSE---LSPEERNLYKKVLGGLTLLDTKQANNGIPSMMSLTDNLQR 90 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWAL-QYTQTLS 170 + L E +H+ ++ I T+L + E+F P++ KA L QY T Sbjct: 91 KAVLSFMGTMEEIHAKSYSSIFTTLLTVPEIDEIFEWIESEPTLQKKAEIVLAQYENT-- 148 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 D+ L V E FY+GF L L KM+ E I+RD Sbjct: 149 ----------DDRYGLYMSMATSVFLESFLFYSGFFYPLFLAGQGKMMASGEIISLILRD 198 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 ESLH + + +I + KE++ K + EI Y + T+ +G GL A Sbjct: 199 ESLHGKYIGLLAQEIFKDFSKEEQKEYKSKVMDVFDRLMENEINYTN-TIYEG-TGL-AD 255 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++++ ANR +G + + NP ++ + K +FF T+ YQ+G Sbjct: 256 EVINFLKYNANRAMENLGYDNRLEVDPVNPIV-LNGLSTETKTHDFFSTKGNGYQKGV 312 >gi|57790965|ref|YP_182369.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 1] gi|5918981|gb|AAD56212.1|AF168792_13 ribonucleotide reductase small subunit [Gallid herpesvirus 1] Length = 310 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 50/293 (17%) Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNPECRQYLLRQAFEEAV 126 K + LT +E K F A+++ L+ +I ++ ++ H + + Y Q E V Sbjct: 42 KDVDLLTPEELDFYKLVFAFLAAADDLINLDIGNLMTLFLH---KDIQHYYAEQIRIETV 98 Query: 127 HSHTFQYIITSLGLDEGELFNMYREV------PSITAKANWA--LQYTQTLSSPSFTTGT 178 HS T Y + + L +G+L R V P+I K +W +Q L+ P Sbjct: 99 HSRT--YSLVQMILFKGDLHARDRYVTEAIKDPAIKKKIDWLNRVQVETDLTLP------ 150 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + ++ ++ EG++F FA I L R N V + + I RDE++H Sbjct: 151 ---------EKYILMILLEGIFFVASFAAIAFLRRRNIFVVMCQSNDLISRDEAVHTTAS 201 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLH----EATLLEIAYAHETMPKGFVGLNAPSCEQ 294 + N W + ++ S +H EA +E + P+ ++ + + Sbjct: 202 CRIYNN--------WLGDHKKPSAKRIHQLFKEAIEIECNFLASRAPQASRLIDLEAIQS 253 Query: 295 YMQFIANRRCHQIGLEPLFKYTENP----FPWMSEVIDLKKEKNFFETRVTEY 343 ++++ +R IG+ +F E P FP ID K NFFE R T Y Sbjct: 254 FVRYSGDRLLTAIGVPTIFD--EPPPDPSFPLTLMSID--KNVNFFEHRSTAY 302 >gi|308490921|ref|XP_003107652.1| hypothetical protein CRE_13354 [Caenorhabditis remanei] gi|308250521|gb|EFO94473.1| hypothetical protein CRE_13354 [Caenorhabditis remanei] Length = 147 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 9/131 (6%) Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N + + Y RDE LH +F + + L K Q++ ++ +A +E Sbjct: 8 NTISSVFRLINYFFRDEGLHRDFACLLYSM-------LQNKLTQERIFEIIKDAVCIEQE 60 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 + E +P +G+N QY++F+A+ ++G + L+ +NPF +M E I + + N Sbjct: 61 FLTEALPVDMIGMNCRLMSQYIEFVADHLLAELGCDKLYN-VKNPFDFM-ENISIDGKTN 118 Query: 335 FFETRVTEYQQ 345 FFE RV+EYQ+ Sbjct: 119 FFEKRVSEYQR 129 >gi|296111477|ref|YP_003621859.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc kimchii IMSNU 11154] gi|295833009|gb|ADG40890.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc kimchii IMSNU 11154] Length = 325 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 72/278 (25%), Positives = 116/278 (41%), Gaps = 33/278 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ ++D ER + G + ++L + + + Sbjct: 25 TWEK---LTQQFWLDTRIPISNDLKNWRGN--MSDQERQTMNLVFGGLTTLDTLQSQDGM 79 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + N + L F E+VH+ ++ I +L N E+ +I A Sbjct: 80 AQLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETL--------NEKSEIEAIFDWADT 131 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + TGT + + V E FY+GF L NKM+ Sbjct: 132 NEFLQYKANRINDIYQTGTSLQKK-------IASVFLETFLFYSGFYTPLYFLGHNKMLN 184 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I QI L +E Q +L+E E Y HE Sbjct: 185 VAEIIKLIIRDESVHGTY-IGYKFQIGFNKLPLAEQESLQSWMYDLLYELYENEEKYTHE 243 Query: 279 TMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313 + EQ + F+ AN+ +G EP+F Sbjct: 244 LYD------DLGWSEQVLTFLRYNANKALMNLGQEPMF 275 >gi|322515075|ref|ZP_08068083.1| ribonucleoside-diphosphate reductase beta subunit [Actinobacillus ureae ATCC 25976] gi|322118955|gb|EFX91132.1| ribonucleoside-diphosphate reductase beta subunit [Actinobacillus ureae ATCC 25976] Length = 326 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 73/317 (23%), Positives = 134/317 (42%), Gaps = 23/317 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y E + +++W+ TE D+ ++ + D ER ++ R + + E Sbjct: 15 PYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYRI--DINDHERHVLTRAMLAISQVEVN 72 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +YR+ PE A E H + +++ LGL+E M+ ++ I Sbjct: 73 V-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLNE-----MFSQIQDI 126 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-A 214 N ++Y + SF EF+ L +F + E + + F ++S + Sbjct: 127 EPLMN-RIRYME-----SFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMSFNKHK 180 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N GI+ + ++E +H FGI + ++ E+ L+T EF ++ +T+ +A E Sbjct: 181 NLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEELKTLSTQAFEAECG 240 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP-----FPWMSEVID 328 +G + ++ + E Y++ N +GLEP Y NP W I Sbjct: 241 ILDWIFEEGDLSFISREAVENYIRSRYNNSLMTLGLEP--PYDVNPELLKETEWFDIEIL 298 Query: 329 LKKEKNFFETRVTEYQQ 345 KE +FF R T+Y + Sbjct: 299 STKETDFFNKRSTDYSK 315 >gi|261494146|ref|ZP_05990649.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310312|gb|EEY11512.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 325 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 74/319 (23%), Positives = 135/319 (42%), Gaps = 27/319 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y E + +++W+ TE D+ +++ + D ER ++ R + + E Sbjct: 14 PYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--INDHERHVLTRAMLAISQVEVN 71 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +YR+ PE A E H + +++ LGL+E M+ ++ I Sbjct: 72 V-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLNE-----MFSQIHEI 125 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-A 214 N ++Y + SF EF+ L +F + E + + F ++S + Sbjct: 126 EPLMN-RIRYME-----SFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMSFNKHK 179 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N GI+ + ++E +H FGI + ++ E+ L+T EF + +T+ ++A E Sbjct: 180 NLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAFEAERG 239 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEP-------LFKYTENPFPWMSEV 326 +G + + + E Y++ N +GLEP L K TE W Sbjct: 240 ILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLEPPHDIDPELLKETE----WFDIE 295 Query: 327 IDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 296 ILSTKETDFFNKRSTDYSK 314 >gi|289551411|ref|YP_003472315.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus lugdunensis HKU09-01] gi|289180942|gb|ADC88187.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus lugdunensis HKU09-01] Length = 322 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 129/299 (43%), Gaps = 28/299 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LTDDER KR L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTDDERNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170 + A E +H+ ++ +I T+L + L + + E P + KA+ ++ L Sbjct: 82 KAVYAFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKADKIIENYHKLW 141 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + DQ + V V E FY+GF L L KM E + I+ D Sbjct: 142 GKEASI----YDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194 Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTM---LHEATLLEIAYAHETMPKGFVG 286 ES+H F GID ++ E L E QQ + M L + E++Y H M +G Sbjct: 195 ESIHGVFTGIDA-QSLRNE---LSENEKQQADKEMYVLLEDLYSNEVSYTH--MLYDDIG 248 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTEY 343 L Y+++ N+ +G +P F+ E F P + +D K +FF + Y Sbjct: 249 L-TEDVLNYVKYNGNKALSNLGFDPYFE--EKDFNPIIENALDTTTKNHDFFSVKGDGY 304 >gi|260904342|ref|ZP_05912664.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium linens BL2] Length = 326 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/267 (22%), Positives = 115/267 (43%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT++E+ + R +++ +++ Sbjct: 34 TGNFWLPEKVPLSNDIPSWAT---LTEEEKTLTMRVFTGLTLLDTIQGTVGAISLIPDAV 90 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P + AF E+VH+ ++ I ++L + E F RE + +KA+ L Y + Sbjct: 91 TPHEEAVMTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSRENTYLQSKADIILSYYR 150 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 151 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLI 195 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + I Q +E+ K E + + ++ E E+AY H+ VG Sbjct: 196 IRDEAVH-GYYIGYKYQKGLESQSEERKQELKDYTMNLMFELYENEVAYTHDLYDS--VG 252 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 L A C+ ++ + AN+ +G E +F Sbjct: 253 L-AEDCKMFLHYNANKALMNLGYEAMF 278 >gi|329738368|gb|AEB97332.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 1] Length = 310 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 50/293 (17%) Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNPECRQYLLRQAFEEAV 126 K + LT +E K F A+++ L+ +I ++ ++ H + + Y Q E V Sbjct: 42 KDVDLLTPEELDFYKFVFAFLAAADDLINLDIGNLMTLFPH---KDIQHYYAEQIRIETV 98 Query: 127 HSHTFQYIITSLGLDEGELFNMYREV------PSITAKANW--ALQYTQTLSSPSFTTGT 178 HS T Y + + L +G+L R V P+I K +W +Q L+ P Sbjct: 99 HSRT--YSLVQMILFKGDLHARDRYVTEAIKDPAIKKKIDWLNRVQVETDLTLP------ 150 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + ++ ++ EG++F FA I L R N V + + I RDE++H Sbjct: 151 ---------EKYILMILLEGIFFVASFAAIAFLRRRNIFVVMCQSNDLISRDEAVHTTAS 201 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLH----EATLLEIAYAHETMPKGFVGLNAPSCEQ 294 + N W + ++ S +H EA +E + P+ ++ + + Sbjct: 202 CRIYNN--------WLGDHKKPSAKRIHQLFKEAIEIECNFLASRAPQASRLIDLEAIQS 253 Query: 295 YMQFIANRRCHQIGLEPLFKYTENP----FPWMSEVIDLKKEKNFFETRVTEY 343 ++++ +R IG+ +F E P FP ID K NFFE R T Y Sbjct: 254 FVRYSGDRLLTAIGVPTIFD--EPPPDPSFPLTLMSID--KNVNFFEHRSTAY 302 >gi|238897538|ref|YP_002923217.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465295|gb|ACQ67069.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 376 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 85/344 (24%), Positives = 148/344 (43%), Gaps = 39/344 (11%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NN L P+ G+ VNV AR D Q P+ + EK LS W P E+ + Sbjct: 11 NNQLLEPMFLGQT-VNV-------ARYD-QQKYPI-FEELIEKQLSF---FWRPEEIDVS 57 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D ++S L + E+ + NL + +S+ + +A+ +S PE ++ AF Sbjct: 58 RDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAF 114 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSPSF----TTG 177 E +HS ++ +II ++ D +F+ I +A + + Y + S+ G Sbjct: 115 SETIHSRSYTHIIRNIVNDPSCIFDDIVTNNEILKRAKDISAYYDDLIKMTSYYHLLDEG 174 Query: 178 TKDADQE--------FLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 T + + + L++ + E + FY FA + M G A+ + Sbjct: 175 THQVNGKTTVVNLYALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKL 234 Query: 227 IMRDESLHL---NFGIDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL +D++ K ++P + +E QQ+ + A E +A Sbjct: 235 IARDEALHLMGTQHMLDLMRSGK-DDPEMADIAQECQQECSDLFLLAAQQEKEWAAYLFR 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 G +GLN QY++++ N R + L+ F NP PW++ Sbjct: 294 DGSMIGLNQDILCQYIEYMTNIRMQAVKLDAPFSIRTNPIPWIN 337 >gi|315658919|ref|ZP_07911786.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus lugdunensis M23590] gi|315496043|gb|EFU84371.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus lugdunensis M23590] Length = 322 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 129/299 (43%), Gaps = 28/299 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LTDDER KR L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTDDERNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170 + A E +H+ ++ +I T+L + L + + E P + KA+ ++ L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKADKIIENYHKLW 141 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + DQ + V V E FY+GF L L KM E + I+ D Sbjct: 142 GKEASI----YDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194 Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTM---LHEATLLEIAYAHETMPKGFVG 286 ES+H F GID ++ E L E QQ + M L + E++Y H M +G Sbjct: 195 ESIHGVFTGIDA-QSLRNE---LSENEKQQADKEMYVLLEDLYSNEVSYTH--MLYDDIG 248 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTEY 343 L Y+++ N+ +G +P F+ E F P + +D K +FF + Y Sbjct: 249 L-TEDVLNYVKYNGNKALSNLGFDPYFE--EKDFNPIIENALDTTTKNHDFFSVKGDGY 304 >gi|226312721|ref|YP_002772615.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacillus brevis NBRC 100599] gi|226095669|dbj|BAH44111.1| ribonucleoside-diphosphate reductase beta chain [Brevibacillus brevis NBRC 100599] Length = 316 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 75/300 (25%), Positives = 121/300 (40%), Gaps = 35/300 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+P+ DD W L+ ER K+ LG +++ + I H+ + Sbjct: 26 WTDDEIPLSDDKMAWME---LSATERDTYKKVLGGLTLLDTVQGGVGMPKIMEHVDGLQR 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E +H+ ++ I T+L E +F+ P + KA + Q + Sbjct: 83 KAVLAFMGMMEQIHAKSYSSIFTTLASTEEIDGIFSWVENNPHLQKKAALISKRYQEIEK 142 Query: 172 PSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 P +DL+ V V E FY+GF L L KM E I+ Sbjct: 143 P--------------KDLYMAMVASVFLESYLFYSGFFYPLYLAGQGKMTSSGEIIDLIV 188 Query: 229 RDESLH-LNFGI---DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 RDES+H L G+ +V + + +E +LHE E AY + Sbjct: 189 RDESIHGLYVGVLAQEVYQGLSVVEQTAAIEEL----YALLHELQENEEAYTTSLYTE-- 242 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +GL A Y+++ AN+ +GL+PLF E NP ++ + K+ +FF + Y Sbjct: 243 IGL-ADEVHAYVRYNANKALMNLGLDPLFPEEEVNPIV-LNGIRTQTKQHDFFSKKGNGY 300 >gi|326536452|ref|YP_004300883.1| NrdB aerobic ribonucleoside diphosphate reductase small subunit [Aeromonas phage 65] gi|312262798|gb|ADQ53054.1| NrdB aerobic ribonucleoside diphosphate reductase small subunit [Aeromonas phage 65] Length = 376 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/293 (22%), Positives = 124/293 (42%), Gaps = 24/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W PTE+ M D + + L+D + + +NL + +S+ L + H+S+ Sbjct: 49 WRPTEIDMSKDSIQF---HQLSDHAKHVYTQNLFVQSLLDSIQGRGPNLVLLPHVSDVTL 105 Query: 114 RQYLLR-QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY------- 165 ++ E +HS ++ +++ ++ + E+F+ P I +A +Y Sbjct: 106 ENFITAWTMVEGTIHSDSYTHMVRAVYPNPTEVFDQVMLTPEIMKRAEAITKYYDAVLLE 165 Query: 166 TQTLSSPSFTTGTKDADQEFLQDL-----FVFYVV--FEGMWFYTGFAQILSLGR-ANKM 217 + LS+ F + L L + + E + FY F S + M Sbjct: 166 SDKLSAMKFLNLDESVLNSQLTKLKESLYLCVHTINALEAIRFYVSFICNFSFPEFSGTM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE+LHL +I+ Q ++P + K + K+ ++ E E Sbjct: 226 EGSAKIMKFIARDENLHLKATQTIISRWQTGKDDPEMVEIAKRLEGKAVSIFEEVVAQEK 285 Query: 274 AYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 +A M K GLN Y++++A+ R GL + +NP PW+++ Sbjct: 286 EWAEYLMGDKSLNGLNRDVLCNYIEYLADNRMRSAGLPSSYAKRKNPLPWVTK 338 >gi|281207436|gb|EFA81619.1| hypothetical protein PPL_05610 [Polysphondylium pallidum PN500] Length = 1292 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 19/181 (10%) Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W+ K L D+ER +I LGFF S ++ NI+ + PE R + Q Sbjct: 60 LLNDVRDWQCK--LDDNERYLISNILGFFVSIAGIINENIITHFMSEVQIPEARTFYSMQ 117 Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E + S + +I + D E +FN +P + K W L+ S Sbjct: 118 IAMENIQSEKYSLLIDAYIKDTDEKSKIFNAIESIPCVKRKCEWLLKSMNNSKS------ 171 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 L + + + E + + F IL + + M ++E Y +I+ +E H F Sbjct: 172 --------LAERLIAFAAVESILYSASFCVILWFHKRSLMPKLSEYYSFIVSNEYTHCEF 223 Query: 238 G 238 G Sbjct: 224 G 224 >gi|53728876|ref|ZP_00348266.1| COG0208: Ribonucleotide reductase, beta subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207635|ref|YP_001052860.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus pleuropneumoniae L20] gi|165975603|ref|YP_001651196.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149418|ref|YP_001967943.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249851|ref|ZP_07336055.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251971|ref|ZP_07338142.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247133|ref|ZP_07529185.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249355|ref|ZP_07531349.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251676|ref|ZP_07533581.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253912|ref|ZP_07535764.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256172|ref|ZP_07537959.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258366|ref|ZP_07540107.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260605|ref|ZP_07542297.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262736|ref|ZP_07544363.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096427|gb|ABN73255.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875704|gb|ABY68752.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914549|gb|ACE60801.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649401|gb|EFL79586.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651418|gb|EFL81570.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306856382|gb|EFM88533.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858649|gb|EFM90711.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860873|gb|EFM92881.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863116|gb|EFM95058.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865353|gb|EFM97249.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867550|gb|EFM99397.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869682|gb|EFN01467.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871881|gb|EFN03598.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 325 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 73/317 (23%), Positives = 132/317 (41%), Gaps = 23/317 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y E + +++W+ TE D+ ++ + D ER ++ R + + E Sbjct: 14 PYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYRI--DINDHERHVLTRAMLAISQVEVN 71 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +YR+ PE A E H + +++ LGL+E M+ ++ I Sbjct: 72 V-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLNE-----MFSQIQDI 125 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-A 214 N ++Y + SF EF+ L +F + E + + F ++S + Sbjct: 126 EPLMN-RIRYME-----SFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMSFNKHK 179 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N GI+ + ++E +H FGI + ++ E+ L+T EF + +T+ +A E Sbjct: 180 NLFKGISNAVEATSKEEEIHGKFGIALYEILREEHSELFTPEFFEDLKTLSSQAFEAECG 239 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP-----FPWMSEVID 328 +G + ++ E Y++ N +GLEP Y NP W I Sbjct: 240 ILDWIFEEGDLSFISREEVENYIRSRYNNSLMTLGLEP--PYDVNPELLKETEWFDIEIL 297 Query: 329 LKKEKNFFETRVTEYQQ 345 KE +FF R T+Y + Sbjct: 298 STKETDFFNKRSTDYSK 314 >gi|293411957|ref|ZP_06654682.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|309797907|ref|ZP_07692288.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|220980068|emb|CAP72260.1| Ribonucleoside-diphosphate reductase subunit beta [Escherichia coli LF82] gi|291469512|gb|EFF12001.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|308118515|gb|EFO55777.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|323934216|gb|EGB30640.1| ribonucleotide reductase [Escherichia coli E1520] Length = 380 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 69/297 (23%), Positives = 128/297 (43%), Gaps = 29/297 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + +K L D ER + NL + +S+ + + +S PE Sbjct: 49 WRPEEVDISSDRIDFNTK--LRDHERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPEL 106 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REV--PSITAKANWALQYTQT 168 ++ +F E +HS ++ +II + D +F+ E+ +I+ A + Y T Sbjct: 107 ETWVETWSFSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIINRAISISAEYDRLYGMT 166 Query: 169 LSSPSFTTGTKDADQEFLQD-----------LFVFYV---VFEGMWFYTGFAQILSLGRA 214 S G K+ ++ ++ + LF V E + FY FA + G Sbjct: 167 CERQSL--GEKEFERLYVNEYGWEPYPLHRQLFRTLVSINALEAIRFYVSFACTFAFGER 224 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATL 270 + G + ++I RDE+LH +I ++ L KE ++++ Sbjct: 225 KLLEGNTKIMRFIARDEALHCEGTERMIRFMRTGREGLLWKEIAADEENVIYDTMKSVAE 284 Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSE 325 E+ +A G +GLNA + Y+++ N +++GL+ LF + T +P WM++ Sbjct: 285 QEMNWADYLFKDGSMIGLNADILKTYVKYRTNLAMNRLGLKALFPEVTTDPLVWMNK 341 >gi|308068541|ref|YP_003870146.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] gi|305857820|gb|ADM69608.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] Length = 321 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 71/298 (23%), Positives = 124/298 (41%), Gaps = 31/298 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+P+ DD W + L+D E+ + LG +++ + I H+ + Sbjct: 29 WTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQIMEHVDGLQR 85 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYTQTLS 170 + L A E +H+ ++ I T+L E E+ ++R E P + KA QY + Sbjct: 86 KAVLSFMAMMEQIHAKSYSSIFTTLASTE-EIDGVFRWVEENPHLQTKAETIRQYYMNIH 144 Query: 171 SPSFTTGTKDADQEFLQDLFVFY---VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +P +DL++ V+ E FY+GF L L KM E I Sbjct: 145 TP--------------KDLYLAMAASVLLESYLFYSGFFYPLYLAGQGKMTCSGEIIDLI 190 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET-MPKGFVG 286 +RDES+H + + +I E ++ Q +L E Y + P G V Sbjct: 191 LRDESIHGVYVGVLAQEIYAELAEEEQRDLYQTLVGLLRYLHNNEEQYTEQIYTPIGLV- 249 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 + ++++ AN+ +G +PLF+ E NP + + + K+ +FF + Y Sbjct: 250 ---DDVKVFLRYNANKAMMNLGFDPLFEEEEVNPIVF-NGISTHTKQHDFFSKKGNGY 303 >gi|1395207|gb|AAB81405.1| ribonucleotide reductase R2-1 small subunit [Mycobacterium tuberculosis str. Erdman] Length = 321 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 73/339 (21%), Positives = 137/339 (40%), Gaps = 51/339 (15%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+LL K WE+ N W+P ++P+ +DLA W++ + + + L + Sbjct: 15 NRLLDAKDLQVWERL---TGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDT 71 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMY 149 +++ V +A+ P L AF E+VH+ ++ I ++L + + F+ Sbjct: 72 AQATVG---AVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWS 128 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 + P + KA + Y + + + + V+ E FY+GF + Sbjct: 129 EQNPYLQRKAQIIVDYYRGDDAQAQRSS----------------VMLESFLFYSGFYLPM 172 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSR 262 K+ A+ + I+RDE++H + G+ + + + +T E Sbjct: 173 YWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCE------ 226 Query: 263 TMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPF 320 +LH EI YAH+ + G+ P YM++ AN+ +G +P F + T Sbjct: 227 -LLHTLYANEIDYAHDLYDELGWTDDVLP----YMRYNANKALANLGYQPAFDRDTCQVN 281 Query: 321 PWMSEVIDLKKEKN--FFETRVTEYQQG-----AELKWD 352 P + +D +N FF + Y G + WD Sbjct: 282 PAVRAALDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 320 >gi|257464834|ref|ZP_05629205.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus minor 202] gi|257450494|gb|EEV24537.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus minor 202] Length = 326 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 79/340 (23%), Positives = 146/340 (42%), Gaps = 35/340 (10%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 KR N+ +KR+ + P +Y E + +++W+ TE D+ +++ + Sbjct: 2 KRRNLFEKRL--------NIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--I 51 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 TD ER ++ R + + E V +YR+ PE A E H + ++ Sbjct: 52 TDHERHVLTRAMLAISQVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFL 110 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + LGL+E M+ ++ I N ++Y + SF EF+ L +F + Sbjct: 111 LEKLGLNE-----MFSQIQDIEPLMN-RIRYME-----SFMKDKDAGKGEFVLSLVLFSL 159 Query: 195 VFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 E + + F ++S + N GI+ + ++E +H FGI + ++ E+ L+ Sbjct: 160 FVEHISLFGQFLIMMSFNKYKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELF 219 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ---IGLE 310 T F ++ +T+ ++A E +G L+ S E + +I +R + +GLE Sbjct: 220 TPAFFEELQTLANQAFEAEKGILDWIFEEG--DLSFISKETVLNYIKSRYNNSLVTLGLE 277 Query: 311 PLFKYTENP-----FPWMSEVIDLKKEKNFFETRVTEYQQ 345 P + NP W I KE +FF R T+Y + Sbjct: 278 P--PHNINPELLKETAWFDIEILSTKETDFFNKRSTDYSK 315 >gi|31793160|ref|NP_855653.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis AF2122/97] gi|224990358|ref|YP_002645045.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|260205258|ref|ZP_05772749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis K85] gi|289574653|ref|ZP_06454880.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis K85] gi|31618751|emb|CAD94705.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium bovis AF2122/97] gi|224773471|dbj|BAH26277.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|289539084|gb|EFD43662.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis K85] Length = 322 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 73/339 (21%), Positives = 136/339 (40%), Gaps = 50/339 (14%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+LL K WE+ N W+P ++P+ +DLA W++ + + + L + Sbjct: 15 NRLLDAKDLQVWERL---TGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDT 71 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMY 149 +++ V +A+ P L AF E+VH+ ++ I ++L + + F+ Sbjct: 72 AQATVG---AVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWS 128 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 + P + KA + Y + + + V+ E FY+GF + Sbjct: 129 EQNPYLQRKAQIIVDYYRGDDALKRKASS---------------VMLESFLFYSGFYLPM 173 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSR 262 K+ A+ + I+RDE++H + G+ + + + +T E Sbjct: 174 YWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCE------ 227 Query: 263 TMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPF 320 +LH EI YAH+ + G+ P YM++ AN+ +G +P F + T Sbjct: 228 -LLHTLYANEIDYAHDLYDELGWTDDVLP----YMRYNANKALANLGYQPAFDRDTCQVN 282 Query: 321 PWMSEVIDLKKEKN--FFETRVTEYQQG-----AELKWD 352 P + +D +N FF + Y G + WD Sbjct: 283 PAVRAALDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 321 >gi|261496013|ref|ZP_05992423.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308263|gb|EEY09556.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica serotype A2 str. OVINE] Length = 325 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 73/319 (22%), Positives = 134/319 (42%), Gaps = 27/319 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y E + +++W+ TE D+ +++ + D ER ++ R + + E Sbjct: 14 PYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--INDHERHVLTRAMLAISQVEVN 71 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +YR+ PE A E H + +++ LGL+E M+ ++ I Sbjct: 72 V-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLNE-----MFSQIHEI 125 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-A 214 N ++Y + SF EF+ L +F + E + + F ++S + Sbjct: 126 EPLMN-RIRYME-----SFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMSFNKHK 179 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N GI+ + ++E +H FGI + ++ E+ L+T EF + +T+ ++A E Sbjct: 180 NLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAFEAERG 239 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEP-------LFKYTENPFPWMSEV 326 +G + + + E Y++ N +GLEP K TE W Sbjct: 240 ILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLEPPHDIDPEFLKETE----WFDIE 295 Query: 327 IDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 296 ILSTKETDFFNKRSTDYSK 314 >gi|300173988|ref|YP_003773154.1| ribonucleoside-diphosphate reductase subunit beta [Leuconostoc gasicomitatum LMG 18811] gi|299888367|emb|CBL92335.1| ribonucleoside-diphosphate reductase, beta subunit [Leuconostoc gasicomitatum LMG 18811] Length = 325 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 117/281 (41%), Gaps = 39/281 (13%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ ++D ER + G + ++L + + + Sbjct: 25 TWEK---LTQQFWLDTRIPISNDLKTWRGN--MSDQERQTMNLVFGGLTTLDTLQSQDGM 79 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + N + L F E+VH+ ++ I +L N E+ +I A Sbjct: 80 AQLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETL--------NEKTEIEAIFDWADT 131 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + TG+ + + V E FY+GF L NKM+ Sbjct: 132 NEFLQYKANRINGIYQTGSPLQKK-------IASVFLETFLFYSGFYTPLYFLGHNKMLN 184 Query: 220 IAEQYQYIMRDESLH---LNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 +AE + I+RDES+H + + + NQ+ E E Q +L+E E Y Sbjct: 185 VAEIIKLIIRDESVHGTYIGYKFQIGFNQLPAEEK----SELQSWMYDLLYELYENEEKY 240 Query: 276 AHETMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313 H+ + EQ + F+ AN+ +G EP+F Sbjct: 241 THQLYD------DLGWTEQVLTFLRYNANKALMNLGQEPMF 275 >gi|325973169|ref|YP_004250233.1| ribonucleoside-diphosphate reductase subunit beta [Mycoplasma suis str. Illinois] gi|323651771|gb|ADX97853.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma suis str. Illinois] Length = 330 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 67/298 (22%), Positives = 129/298 (43%), Gaps = 28/298 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDER---LMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W+ E+P+ D +W+++ LT+ E+ + + +L + + + N + L Sbjct: 37 WVDEEIPLSGDKLVWQAR--LTEKEKDVYVKVLVSLTLLDTHQGAIGMNRICLAVPDLPT 94 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQT 168 Q++ A E +H+ ++ I +L E ELF ++ PS+ K + + Y + Sbjct: 95 KAVLQFM---AMMEQMHAKSYSSIFCTLLSTEQINELFEWIKKEPSLQKKVDIVVSYYEN 151 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 + DQE L V V E FY+GF +L L M+ E I+ Sbjct: 152 IK-----------DQESLYMAMVASVFLESFLFYSGFFYMLYLSSQGLMINSGEIINLII 200 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287 RDE++H + ++ +++ ++ +++ ++L E EI Y + P VG Sbjct: 201 RDEAIHGLYIGNLASKLFSTFDSEKQEKLKKQVYSLLEELMENEIEYTEKVYSPINLVG- 259 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343 Q++++ AN+ + LE + TEN P + ++ K +FF T+ Y Sbjct: 260 ---EVIQFLKYNANKALQNLDLEEKYDVTENDINPMIFNGLNTSTKNHDFFSTKGNGY 314 >gi|308172806|ref|YP_003919511.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus amyloliquefaciens DSM 7] gi|307605670|emb|CBI42041.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus amyloliquefaciens DSM 7] Length = 327 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 74/312 (23%), Positives = 129/312 (41%), Gaps = 34/312 (10%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y W+P E+ + DL WK+ L E+ R L ++ N + I Sbjct: 25 YAQNVKQFWLPEEISLNGDLLSWKA---LGPAEQTTYMRGLAGLTLLDTEQGNTGMPIIA 81 Query: 106 RHLSNPECRQYLLRQAF-EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 +H++ + + L A E AVH+ ++ I +L E E+F + P + KA Sbjct: 82 KHIAGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKTNPYLQRKA--- 138 Query: 163 LQYTQTLSSPSFTTG----TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 + TG K+ D L V V E FY+GF L K+ Sbjct: 139 ----------ALITGLYRDIKEGDAISLYKALVASVYLESFLFYSGFYYPLYFAGQGKLT 188 Query: 219 GIAEQYQYIMRDESLH-LNFGIDVINQIKIENP--HLWTKEFQQKSRTMLHEATLLEIAY 275 E I+RDE++H + G+ ++P L ++F + T L++ E+AY Sbjct: 189 SSGEIINLIIRDEAIHGVYVGLLAQEIYGKQDPDVQLEMRDFAVELLTELYDN---EVAY 245 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKN 334 + VGL ++++++ AN+ +G +P F+ E P P + ++ K K + Sbjct: 246 TEDLYDA--VGLTH-DVKRFLRYNANKALQNLGFDPYFE-EERPNPIVMNGLNTKTKSHD 301 Query: 335 FFETRVTEYQQG 346 FF + Y++ Sbjct: 302 FFSQKGNGYKKA 313 >gi|9629834|ref|NP_045318.1| ribonucleotide reductase subunit 2 [Bovine herpesvirus 1] gi|266916|sp|Q01319|RIR2_BHV1C RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|330772|gb|AAA46063.1| ribonucleotide reductase small subunit [Bovine herpesvirus 1] gi|995642|emb|CAA90928.1| UL40 [Bovine herpesvirus 1] gi|1149578|emb|CAA88899.1| UL40 [Bovine herpesvirus 1] gi|2653307|emb|CAA06093.1| ribonucleotide reductase small subunit [Bovine herpesvirus type 1.1] Length = 314 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 76/307 (24%), Positives = 121/307 (39%), Gaps = 50/307 (16%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL-SN 110 N W+ TE P+ DD K L+ E + F ++++ LV N+ L L + Sbjct: 35 NRWLETEFPLADDA---KDVARLSGAELEFYRFLFAFLSAADDLV--NVNLGDLSELFTQ 89 Query: 111 PECRQYLLRQAFEEAVHSHTFQYI---------ITSLGLDEGELFNMYREVPSITAKANW 161 + Y + Q E VHS + I + G EG L + P++ K +W Sbjct: 90 KDILHYYIEQESIEVVHSRVYSAIQLLLFRNDAVARAGYVEGALGD-----PAVRRKVDW 144 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + A E + + +V ++ EG++F + FA I L N V Sbjct: 145 LER--------------RVAAAESVAEKYVLMILIEGIFFSSSFAAIAYLRTHNLFVVTC 190 Query: 222 EQYQYIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE++H + N + E P + + EA L A Sbjct: 191 QTNDLISRDEAVHTAASCCIFDNYLGGERPP------PARIYELFREAWKLS-ASLFGCA 243 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNFF 336 P+G L+ + Y+++ A+R I L PLF T+ P M+ +K NFF Sbjct: 244 PRGSHILDVEAISAYVEYSADRLLAAIQLPPLFGTPPPGTDFPLALMTA----EKHTNFF 299 Query: 337 ETRVTEY 343 E R T Y Sbjct: 300 ERRSTNY 306 >gi|15841457|ref|NP_336494.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CDC1551] gi|57116932|ref|YP_177853.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Rv] gi|148661790|ref|YP_001283313.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|148823195|ref|YP_001287949.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis F11] gi|167970496|ref|ZP_02552773.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|215404217|ref|ZP_03416398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|215411671|ref|ZP_03420467.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|215427336|ref|ZP_03425255.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T92] gi|215430897|ref|ZP_03428816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|215446189|ref|ZP_03432941.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|218753694|ref|ZP_03532490.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis GM 1503] gi|219557941|ref|ZP_03537017.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T17] gi|253798971|ref|YP_003031972.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 1435] gi|254232151|ref|ZP_04925478.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis C] gi|254364798|ref|ZP_04980844.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis str. Haarlem] gi|254551002|ref|ZP_05141449.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186953|ref|ZP_05764427.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CPHL_A] gi|260201080|ref|ZP_05768571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T46] gi|289443470|ref|ZP_06433214.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289447597|ref|ZP_06437341.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis CPHL_A] gi|289554242|ref|ZP_06443452.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 605] gi|289570077|ref|ZP_06450304.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T17] gi|289746076|ref|ZP_06505454.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289750559|ref|ZP_06509937.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T92] gi|289754082|ref|ZP_06513460.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289758093|ref|ZP_06517471.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|289762136|ref|ZP_06521514.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis GM 1503] gi|294996911|ref|ZP_06802602.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 210] gi|297634550|ref|ZP_06952330.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN 4207] gi|297731538|ref|ZP_06960656.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN R506] gi|298525478|ref|ZP_07012887.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|306776213|ref|ZP_07414550.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu001] gi|306779994|ref|ZP_07418331.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu002] gi|306784744|ref|ZP_07423066.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu003] gi|306789101|ref|ZP_07427423.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu004] gi|306793436|ref|ZP_07431738.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu005] gi|306797819|ref|ZP_07436121.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu006] gi|306803700|ref|ZP_07440368.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu008] gi|306808274|ref|ZP_07444942.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu007] gi|306968097|ref|ZP_07480758.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu009] gi|306972322|ref|ZP_07484983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu010] gi|307080033|ref|ZP_07489203.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu011] gi|307084607|ref|ZP_07493720.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu012] gi|313658871|ref|ZP_07815751.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN V2475] gi|1710397|sp|Q10840|RIR2A_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta nrdF1; AltName: Full=Ribonucleotide reductase R2-1 small subunit; AltName: Full=Ribonucleotide reductase small subunit 1 gi|13881697|gb|AAK46308.1| ribonucleoside-diphosphate reductase R2-1, beta subunit [Mycobacterium tuberculosis CDC1551] gi|38490297|emb|CAE55444.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|124601210|gb|EAY60220.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis C] gi|134150312|gb|EBA42357.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis str. Haarlem] gi|148505942|gb|ABQ73751.1| ribonucleoside-diphosphate reductase subunit beta NrdF1 [Mycobacterium tuberculosis H37Ra] gi|148721722|gb|ABR06347.1| ribonucleoside-diphosphate reductase beta subunit nrdF1 [Mycobacterium tuberculosis F11] gi|253320474|gb|ACT25077.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 1435] gi|289416389|gb|EFD13629.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289420555|gb|EFD17756.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis CPHL_A] gi|289438874|gb|EFD21367.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 605] gi|289543831|gb|EFD47479.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T17] gi|289686604|gb|EFD54092.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289691146|gb|EFD58575.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T92] gi|289694669|gb|EFD62098.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289709642|gb|EFD73658.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis GM 1503] gi|289713657|gb|EFD77669.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|298495272|gb|EFI30566.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|308215325|gb|EFO74724.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu001] gi|308327098|gb|EFP15949.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu002] gi|308330477|gb|EFP19328.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu003] gi|308334311|gb|EFP23162.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu004] gi|308338113|gb|EFP26964.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu005] gi|308341805|gb|EFP30656.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu006] gi|308345291|gb|EFP34142.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu007] gi|308349595|gb|EFP38446.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu008] gi|308354222|gb|EFP43073.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu009] gi|308358200|gb|EFP47051.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu010] gi|308362132|gb|EFP50983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu011] gi|308365786|gb|EFP54637.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu012] gi|323719468|gb|EGB28595.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis CDC1551A] gi|326903590|gb|EGE50523.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis W-148] gi|328458726|gb|AEB04149.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 4207] Length = 322 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 73/339 (21%), Positives = 136/339 (40%), Gaps = 50/339 (14%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+LL K WE+ N W+P ++P+ +DLA W++ + + + L + Sbjct: 15 NRLLDAKDLQVWERL---TGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDT 71 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMY 149 +++ V +A+ P L AF E+VH+ ++ I ++L + + F+ Sbjct: 72 AQATVG---AVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWS 128 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 + P + KA + Y + + + V+ E FY+GF + Sbjct: 129 EQNPYLQRKAQIIVDYYRGDDALKRKASS---------------VMLESFLFYSGFYLPM 173 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSR 262 K+ A+ + I+RDE++H + G+ + + + +T E Sbjct: 174 YWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCE------ 227 Query: 263 TMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPF 320 +LH EI YAH+ + G+ P YM++ AN+ +G +P F + T Sbjct: 228 -LLHTLYANEIDYAHDLYDELGWTDDVLP----YMRYNANKALANLGYQPAFDRDTCQVN 282 Query: 321 PWMSEVIDLKKEKN--FFETRVTEYQQG-----AELKWD 352 P + +D +N FF + Y G + WD Sbjct: 283 PAVRAALDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 321 >gi|307244959|ref|ZP_07527056.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854124|gb|EFM86332.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 325 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 73/317 (23%), Positives = 132/317 (41%), Gaps = 23/317 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y E + +++W+ TE D+ ++ + D ER ++ R + + E Sbjct: 14 PYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYRI--DINDHERHVLTRAMLAISQVEVN 71 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +YR+ PE A E H + +++ LGL+E M+ ++ I Sbjct: 72 V-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLNE-----MFSQIQDI 125 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-A 214 N ++Y + SF EF+ L +F + E + + F ++S + Sbjct: 126 EPLMN-RIRYME-----SFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMSFNKHK 179 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N GI+ + ++E +H FGI + ++ E+ L+T EF + +T+ +A E Sbjct: 180 NLFKGISNAVEATSKEEEIHGKFGIVLYEILREEHSELFTPEFFEDLKTLSSQAFEAECG 239 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP-----FPWMSEVID 328 +G + ++ E Y++ N +GLEP Y NP W I Sbjct: 240 ILDWIFEEGDLSFISREEVENYIRSRYNNSLMTLGLEP--PYDVNPELLKETEWFDIEIL 297 Query: 329 LKKEKNFFETRVTEYQQ 345 KE +FF R T+Y + Sbjct: 298 STKETDFFNKRSTDYSK 314 >gi|325989612|ref|YP_004249311.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma suis KI3806] gi|323574697|emb|CBZ40353.1| Ribonucleoside-diphosphate reductase beta chain [Mycoplasma suis] Length = 330 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 67/298 (22%), Positives = 129/298 (43%), Gaps = 28/298 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDER---LMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W+ E+P+ D +W+++ LT+ E+ + + +L + + + N + L Sbjct: 37 WVDEEIPLSGDKLVWQAR--LTEKEKDVYVKVLVSLTLLDTHQGAIGMNRICLAVPDLPT 94 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQT 168 Q++ A E +H+ ++ I +L E ELF ++ PS+ K + + Y + Sbjct: 95 KAVLQFM---AMMEQMHAKSYSSIFCTLLSTEQINELFEWIKKEPSLQKKVDIVVSYYEN 151 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 + DQE L V V E FY+GF +L L M+ E I+ Sbjct: 152 IK-----------DQESLYMAMVASVFLESFLFYSGFFYMLYLSSQGLMINSGEIINLII 200 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287 RDE++H + ++ +++ ++ +++ ++L E EI Y + P VG Sbjct: 201 RDEAIHGLYIGNLASKLFSTFDSEKQEKLKKQVYSLLEELMENEIEYTEKIYSPINLVG- 259 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343 Q++++ AN+ + LE + TEN P + ++ K +FF T+ Y Sbjct: 260 ---EVIQFLKYNANKALQNLDLEEKYDVTENDINPMIFNGLNTSTKNHDFFSTKGNGY 314 >gi|114766102|ref|ZP_01445111.1| ribonucleoside-diphosphate reductase, beta subunit protein [Pelagibaca bermudensis HTCC2601] gi|114541657|gb|EAU44698.1| ribonucleoside-diphosphate reductase, beta subunit protein [Roseovarius sp. HTCC2601] Length = 326 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 65/265 (24%), Positives = 114/265 (43%), Gaps = 24/265 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT++ER + R +++ + A+ P Sbjct: 36 NFWLPEKVPLSNDVQSWAT---LTEEERQLTIRVFTGLTLLDTIQNSVGAPAMMPDCLTP 92 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L + E F E P + AKA L+ Sbjct: 93 HEESVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFRWSDENPHLQAKARAVLE----- 147 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 T +AD + VF E FY+GF + K+ A+ + I+R Sbjct: 148 ------TYAPEADPLKRKIASVF---LESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 198 Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + G +++E+P +E + + +L E +E Y E +GL Sbjct: 199 DEAVHGYYIGYKFQRGLELESPER-RQELKDYAFGLLFELYDIEARYTEELYDG--IGLT 255 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 + ++ + AN+ +G E LF Sbjct: 256 E-EVKAFLHYNANKALQNLGFEALF 279 >gi|295695705|ref|YP_003588943.1| ribonucleotide reductase [Bacillus tusciae DSM 2912] gi|295411307|gb|ADG05799.1| ribonucleotide reductase [Bacillus tusciae DSM 2912] Length = 296 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 18/205 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-- 111 W P E+ D WK+ LT D++ +I + F + E V ++ L + R +++ Sbjct: 31 WDPKELDFTQDREDWKT---LTTDQKELILKLCSLFQAGEEAVTRDL-LPLIRVVASEGR 86 Query: 112 -ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 E YL FEEA H+ +F+ + + G+L +I K N+ + + L Sbjct: 87 LEEEMYLTTFLFEEAKHTESFRLFLDEVAEYRGDL--------AIYHKENYKKVFYEYLP 138 Query: 171 SPSFTTGTKDADQEFLQDLFVFY-VVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIM 228 + D E + V Y ++ EG+ TG+ +LGR KM G+ + +Y+ Sbjct: 139 Q-AMERLIHDPSPEAQAEASVTYNMIVEGVLAETGYHGFSNALGRQGKMPGLLKAVEYLK 197 Query: 229 RDESLHLNFGIDVINQIKIENPHLW 253 RDES H+ +G +++++ EN ++W Sbjct: 198 RDESRHIGYGTYLLSRLIAENENVW 222 >gi|251792578|ref|YP_003007304.1| ribonucleoside-diphosphate reductase subunit beta [Aggregatibacter aphrophilus NJ8700] gi|247533971|gb|ACS97217.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter aphrophilus NJ8700] Length = 329 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 71/320 (22%), Positives = 138/320 (43%), Gaps = 23/320 (7%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ P +Y E + +++W+ TE D+ +++ ++D ER +I + + + Sbjct: 15 EIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDFRTH--ISDVERAVITKTMLAISQI 72 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 E V +Y + PE E H + +++ LGL+E +F R+ Sbjct: 73 EVSV-KRFWGNLYNYFPKPEIEDVGGSFLESEIRHKDAYSFLLEKLGLNE--MFLNVRQY 129 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +I A+ ++Y + +F + Q+F+ L +F + E + ++ F ++S Sbjct: 130 KAIMAR----IEYME-----AFMRRKDVSQQDFVLSLIMFSLFVEHISLFSQFVIMMSFN 180 Query: 213 R-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 + N GI+ + ++E +H FGI + + ++ E P L+T F + + + +A Sbjct: 181 KHKNLFKGISNAIEATSKEEEIHGRFGITLYSILREEQPELFTDAFFTELKELADQAFTA 240 Query: 272 EIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP-----FPWMSE 325 E + G + L+ + E Y+ N +GLEP Y NP W Sbjct: 241 EKEILNWIFEDGELDFLSKATVENYIANRYNNSLQALGLEP--AYNINPEQLKETEWFDI 298 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 299 EILSTKETDFFNKRSTDYSK 318 >gi|295398337|ref|ZP_06808379.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] gi|294973476|gb|EFG49261.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] Length = 317 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 66/276 (23%), Positives = 121/276 (43%), Gaps = 26/276 (9%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A W+ T VP+ +DL WK L+ E+ ++K+ +G A ++L + Sbjct: 18 FVWDK---ATAQFWLDTRVPVSNDLLEWKK---LSTMEKEIVKKAVGGLALLDTLQSEEG 71 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + A+ +H + R L F E++H+ T+ I+ SL N ++++ I N Sbjct: 72 LYALKKHARTQKERAVLSNFMFMESIHAKTYGTILISL--------NTFKDIEEIYDWMN 123 Query: 161 W--ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 +Q+ + + GT + V V EG+ +Y+ F L NK+ Sbjct: 124 NDPMMQFKAEKINNIYQNGTPIQVK-------VASVFLEGILYYSNFFIPLWYRGQNKLA 176 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + ++RDES+H + Q E + F Q + L E E A+ E Sbjct: 177 NLAELIKLVIRDESVHGTYLGYKFRQDFEELTQDEQEAFTQWMYSFLEELLEKEFAFTEE 236 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + +GL A + ++++ AN+ +G F+ Sbjct: 237 LYTE--IGL-AEDIKTFVKYNANKSLQNMGFGIYFE 269 >gi|240950330|ref|ZP_04754600.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus minor NM305] gi|240295141|gb|EER45960.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus minor NM305] Length = 326 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 39/342 (11%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 KR N+ +KR+ + P +Y E + +++W+ TE D+ +++ + Sbjct: 2 KRRNLFEKRL--------NIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--I 51 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 TD ER ++ R + + E V +YR+ PE A E H + ++ Sbjct: 52 TDHERHVLTRAMLAISQVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFL 110 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + LGL+E M+ ++ I N ++Y + SF EF+ L +F + Sbjct: 111 LEKLGLNE-----MFSQIQDIEPLMN-RIRYME-----SFMKDKDAGKGEFVLSLVLFSL 159 Query: 195 VFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 E + + F ++S + N GI+ + ++E +H FGI + ++ E+ L+ Sbjct: 160 FVEHISLFGQFLIMMSFNKYKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELF 219 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ---IGLE 310 T F ++ +T+ +A E +G L+ S E + +I +R + +GLE Sbjct: 220 TPAFFEELQTLASQAFEAEKGILDWIFEEG--DLSFISKETVLNYIKSRYNNSLVTLGLE 277 Query: 311 P-------LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 P L K T W I KE +FF R T+Y + Sbjct: 278 PPHDINPELLKET----AWFDIEILSTKETDFFNKRSTDYSK 315 >gi|703073|gb|AAA80557.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2] Length = 354 Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 64/299 (21%), Positives = 118/299 (39%), Gaps = 32/299 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109 N W TE + DDL G +E+ + F ++++ LV NI +L+++ + Sbjct: 75 NRWTETEFVIADDL----EDVGKLKNEKNFYRFLFTFLSAADDLVNLNIDSLLSLF---T 127 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG----ELFNMYREVPSITAKANWALQY 165 + Y Q EAVHS + I L ++ E P+I +K W + Sbjct: 128 QKDIHHYYFEQECIEAVHSRAYSIIQLMLFSNDQAARQEYVTSTLRSPAILSKLEWLERR 187 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 +S + + ++ ++ EG++F FA I L N V + Sbjct: 188 VAECTS--------------IAEKYILMILIEGIFFTASFAAIAYLRVNNLFVVTCQINN 233 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 I RDE++H+ + +N K + T+ EA +E + P+ Sbjct: 234 LISRDEAIHVEASCCIF-----KNYLAGPKPTTARIHTLFKEAVTVECEFLRTAAPRTSN 288 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 +N + Y+++ A+R + + P++ + P + ++ NFFE R T Y Sbjct: 289 IINIDAICSYVRYSADRLLRALDILPIYDEPKPPADFPLVLMSAASNTNFFERRNTAYS 347 >gi|167837964|ref|ZP_02464823.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis MSMB43] Length = 70 Score = 62.8 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 25/38 (65%), Positives = 31/38 (81%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA 49 A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ Sbjct: 33 ASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAG 70 >gi|38639969|ref|NP_943924.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1] gi|33414658|gb|AAQ17701.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1] Length = 376 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 119/292 (40%), Gaps = 25/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + N L++ E+ + +NL + + +S+ L +S+ Sbjct: 48 WRPEEVDLSKDAIDY---NQLSEAEQHVFTQNLKYQSLLDSVQGRAPNLVFLPIVSDVAL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ +F E +HS ++ +I+ +L +D +F+ I A+A QY Sbjct: 105 ETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDSKIMARATSVTQYYDNLIKEL 164 Query: 166 ------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 TQ++ SP +E L E + FY FA S G M G Sbjct: 165 KTYDLLTQSVFSPELRVAQLTKVKEALYLAMHAVNALEAIRFYVSFACTFSFGERGIMEG 224 Query: 220 IAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLW--TKEFQQKSRTMLHEATLLEIAY 275 A+ + I RDE LHL +I Q ++ ++ K + K+ + E E + Sbjct: 225 NAKIMRLIARDEQLHLKGTQYLIRAWQNAEDDSEMYEIAKRLEHKAVQIFLEVAEQEKEW 284 Query: 276 AHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGL---EPLFKYTENPFPWM 323 A + + + GL+ S Y+ ++ R GL E L ++P PW+ Sbjct: 285 ARDLLGNVTIPGLSLSSMLDYIDYLTVSRMRSAGLPAPEELNIGMKHPLPWI 336 >gi|94676795|ref|YP_588829.1| ribonucleotide-diphosphate reductase subunit beta [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219945|gb|ABF14104.1| ribonucleoside-diphosphate reductase, beta subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 376 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 69/292 (23%), Positives = 123/292 (42%), Gaps = 24/292 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++ L E+ + N+ + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDISLDRIDYQ---ALPQHEKHIFISNIKYQTLLDSIQGRSPNVALLPLISIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ AF E +HS ++ +II ++ D +F+ I +A + A Y + Sbjct: 106 ETWVETWAFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNTEILKRAKDIAAFYDDLIQMT 165 Query: 173 S----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 S F G + E + L++ + E + FY FA + M Sbjct: 166 SYFHLFGEGNHSINGKLVIVNQHELKKKLYLCLMSINALEAIRFYVSFACSFAFAERKLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ + I RDE+LHL ++N +++ ++P + E Q S + A E Sbjct: 226 EGNAKIIRLIARDEALHLAGTQHMLNLMRLGKDDPEMADIALECQHDSYHLFLXAANQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R + L+ F NP PW++ Sbjct: 286 DWASYLFRDGSMIGLNEEILCQYIEYITNIRMQAVLLDLPFATRSNPIPWIN 337 >gi|328958552|ref|YP_004375938.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] gi|328674876|gb|AEB30922.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] Length = 318 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 29/199 (14%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A + W+ T VP+ +DLA W+ L+ E+ +IK+ +G A ++L + Sbjct: 20 YVWDK---ATSQFWLDTRVPISNDLADWRE---LSSVEQEVIKKVVGGLALLDTLQSEKG 73 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 V A+ + + L F E++H+ ++ I+TSL + SI + Sbjct: 74 VNAMREDVRTHKEAAILNNFLFMESIHAKSYGTILTSLN-----------SIKSINEIYD 122 Query: 161 WA-----LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 W +QY + + TG +A Q+ + +F+ EG+ +Y+ F L +N Sbjct: 123 WMNNDERMQYKAKRINDIYKTG--NALQKKIASIFL-----EGILYYSNFFAPLWYRGSN 175 Query: 216 KMVGIAEQYQYIMRDESLH 234 K+ +AE + I+RDES+H Sbjct: 176 KLANLAELIKLIIRDESVH 194 >gi|310641424|ref|YP_003946182.1| ribonucleoside-diphosphate reductase beta chain [Paenibacillus polymyxa SC2] gi|309246374|gb|ADO55941.1| Ribonucleoside-diphosphate reductase beta chain [Paenibacillus polymyxa SC2] Length = 321 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 72/302 (23%), Positives = 126/302 (41%), Gaps = 39/302 (12%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+P+ DD W + L+D E+ + LG +++ + I H+ + Sbjct: 29 WTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQIMEHVDGLQR 85 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYTQTLS 170 + L A E +H+ ++ I T+L E E+ ++R E P + KA QY + Sbjct: 86 KAVLSFMAMMEQIHAKSYSSIFTTLASTE-EIDGVFRWVEENPHLQTKAETIRQYYMNIH 144 Query: 171 SPSFTTGTKDADQEFLQDLFVFY---VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +P +DL++ V+ E FY+GF L L K+ E I Sbjct: 145 TP--------------KDLYLAMAASVLLESYLFYSGFFYPLYLAGQGKLTCSGEIIDLI 190 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML-----HEATLLEIAYAHETMPK 282 +RDES+H + + +I E ++ Q +L +E E YA P Sbjct: 191 LRDESIHGVYVGVLAQEIYAELDEEEQRDLYQTLVGLLRYLHNNEEQYTEQIYA----PI 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 G V + ++++ AN+ +G +PLF+ E NP + + + K+ +FF + Sbjct: 247 GLV----DDVKVFLRYNANKAMMNLGFDPLFEEEEVNPIVF-NGISTHTKQHDFFSKKGN 301 Query: 342 EY 343 Y Sbjct: 302 GY 303 >gi|14970916|emb|CAC44510.1| putative ribonucleotide reductase small subunit [Sphaerechinus granularis] Length = 141 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 70/152 (46%), Gaps = 16/152 (10%) Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE- 144 L FFA+S+ +V N+V + + E R + Q E +HS + +I + D + Sbjct: 3 LAFFAASDGIVNENLVERFSQEVQIAEARCFYGFQIAIENIHSEMYSLLIDAYIKDAVQR 62 Query: 145 --LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 LFN +P +T KA WAL + +SS S GT+ V + EG++F Sbjct: 63 DYLFNAVETMPCVTKKAQWALDW---ISSDSADFGTR----------IVAFAAVEGIFFS 109 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 FA I L + M G+ + I RDE LH Sbjct: 110 GSFAAIFWLKKRGLMPGLTFSNELISRDEGLH 141 >gi|313890786|ref|ZP_07824411.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313120887|gb|EFR44001.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 319 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 67/289 (23%), Positives = 121/289 (41%), Gaps = 46/289 (15%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+D E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 EAIRADIRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEDIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G DA Q+ + ++ E FY+GF L NK+ Sbjct: 127 NEFLQKKAKIINDIYANG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270 +AE + I+RDES+H G + +N+ + E+ W + +Q + TL Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELNEEEQESFREWMYDLLYQLYENEENYTKTL 239 Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + + + E M ++++ AN+ +G +PLF T N Sbjct: 240 YDQVGWTDEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275 >gi|270000178|gb|ACZ57936.1| m015L [Myxoma virus] Length = 103 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 2/88 (2%) Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +++ +++ EA ++E + E +P +G+N QY++F+A+R ++G +F T Sbjct: 1 EERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSAT- 59 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 NPF +M E I L+ + NFFE RV++YQ+ Sbjct: 60 NPFDFM-ENISLEGKTNFFEKRVSDYQR 86 >gi|21672460|ref|NP_660527.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091143|sp|Q8K9W4|RIR2_BUCAP RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|21623075|gb|AAM67738.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 376 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/293 (22%), Positives = 126/293 (43%), Gaps = 26/293 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L +E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEIDLSKDRIDF---DNLPSNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ +F E +HS ++ +II ++ + +F+ +I +A + ++ Y + + Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIINNPSIVFDDIISNKNINDRAQDISIYYDELIRIT 165 Query: 173 SF----TTGTKDADQEFLQ-----------DLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 ++ G +++ ++ + V E + FY FA + M Sbjct: 166 AYWHLLGEGNHKINEKKVEINLKLLKRRLYLCLISVNVLEAIRFYVSFACSFAFAEREIM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-----EFQQKSRTMLHEATLLE 272 G A+ + I RDE+LHL G I I + E ++++ + A+ E Sbjct: 226 EGNAKIIRLIARDEALHLT-GTQHILNILNNEKNNENMKNTVLECREEAIKIFISASEQE 284 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN QY+++I N R H IG + F+ T NP PW++ Sbjct: 285 KKWAKYLFQDGSMLGLNKDILCQYIEYITNIRMHAIGFKMPFEKTSNPIPWIN 337 >gi|118469232|ref|YP_886661.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium smegmatis str. MC2 155] gi|118469934|ref|YP_885432.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium smegmatis str. MC2 155] gi|118170519|gb|ABK71415.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium smegmatis str. MC2 155] gi|118171221|gb|ABK72117.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium smegmatis str. MC2 155] Length = 324 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/310 (21%), Positives = 130/310 (41%), Gaps = 42/310 (13%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LTD+E+ + R +++ +++ Sbjct: 32 TGNFWLPEKVPVSNDIQSWHT---LTDNEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAV 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166 P L AF E+VH+ ++ I ++L E+ + +R E P++ KA +QY Sbjct: 89 TPHEEAVLTNIAFMESVHAKSYSNIFSTL-CSTAEIDDAFRWSEENPNLQRKAAIVMQYY 147 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + D+ + V + E FY+GF + K+ A+ + Sbjct: 148 R-------------GDEPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRL 192 Query: 227 IMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 I+RDE++H + G+ ++++ K +E + + +L E E+ Y + Sbjct: 193 IIRDEAVHGYYIGYKYQRGLALVDEEK-------KQELKDYTYELLFELYDNEVEYTQDL 245 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFF 336 VGL ++++++ AN+ +G E LF E NP + + + +FF Sbjct: 246 YDS--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSALAPNADENHDFF 302 Query: 337 ETRVTEYQQG 346 + Y G Sbjct: 303 SGSGSSYVIG 312 >gi|240169547|ref|ZP_04748206.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium kansasii ATCC 12478] Length = 320 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 70/328 (21%), Positives = 137/328 (41%), Gaps = 45/328 (13%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 13 NRLQDEKDAEVWDRL---TGNFWLPEKVPVSNDIPSWGT---LTANEKQLTMRVFTGLTM 66 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P L AF E+VH+ ++ I ++L E+ + +R Sbjct: 67 LDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRW 125 Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 E P++ KA LQY + D+ + V + E FY+GF Sbjct: 126 SEENPNLQRKAEIVLQYYR-------------GDEPLKRK--VASTLLESFLFYSGFYLP 170 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKS 261 + K+ A+ + I+RDE++H + G+ +++++K E + + Sbjct: 171 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDEVK-------RAELKDYT 223 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318 +L E E+ Y + + VGL ++++++ AN+ +G E LF E N Sbjct: 224 YELLFELYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVN 280 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346 P + + + +FF + Y G Sbjct: 281 PAILSALSPNADENHDFFSGSGSSYVIG 308 >gi|10834911|ref|NP_066872.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 3] gi|5102912|dbj|BAA78729.1| UL40 protein [Marek's disease virus serotype 2 MDV2] gi|5689312|dbj|BAA82936.1| UL40 product homolog [Marek's disease virus serotype 2 MDV2] gi|10800005|dbj|BAB16550.1| UL40 protein [Gallid herpesvirus 3] Length = 353 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 68/301 (22%), Positives = 123/301 (40%), Gaps = 35/301 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109 N W TE + +DL L+++E+ + F ++++ LV NI +L ++ Sbjct: 73 NRWTETEFVVAEDLG---DVAKLSEEEKNFYRFLFTFLSAADDLVNLNIDNLLGLFEQ-- 127 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT- 168 + Y Q EAVHS + II + D +A+A +Y Q+ Sbjct: 128 -KDIHHYYFEQECIEAVHSRAYS-IIQLMLFDNDS-----------SARA----KYVQSA 170 Query: 169 LSSPSFTTGTKDADQEFLQ-----DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L SP + + D+ L+ + ++ ++ EG++F FA+I L N V + Sbjct: 171 LESPVIQSKLEWLDRRILECTSIPEKYILMILTEGIFFSASFARIAYLRTNNLFVVTCQI 230 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 I RDE++H+ + N K + + + EA LE A+ P+ Sbjct: 231 NNLISRDEAIHVEASCCIFKNYIAGN-----KPSTARIQALFSEAVDLECAFLRAAAPRD 285 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 L+ S Y+++ A+R + + P++ + ++ NFFE R T Y Sbjct: 286 SRLLDIGSICSYVRYSADRLLRMLDVPPIYGEPSPAADFPLSLMSASNNTNFFERRSTAY 345 Query: 344 Q 344 Sbjct: 346 S 346 >gi|156847976|ref|XP_001646871.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM 70294] gi|156117552|gb|EDO19013.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM 70294] Length = 351 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/316 (19%), Positives = 131/316 (41%), Gaps = 21/316 (6%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY ++ Y W E+ D+ W + + +T DE+ R L FAS++ Sbjct: 38 LFPIKYHEIYDAYKKREALFWTAEELDFSKDIQNW-NDDKITKDEKEYFIRLLALFASND 96 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 + N+ + PE + + Q + +H + +I SL D+ + +M+ E+ Sbjct: 97 -MDRENLTEHLSAECQTPEAKCFYGFQIMVDNIHQEVYGILIDSLVKDDEKRTSMFEEIK 155 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 +T ++Y ++ ++ D F + L V G++ + + +LS + Sbjct: 156 DLT-NIKEKIEYAKSW--------FENEDNLFGEKLIAEAAVL-GIFSLSAYVSVLSFQK 205 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 + G ++RD LH++F + HL + + + ++ +A +E Sbjct: 206 GGLIPGFVTGVDNMLRDRGLHVDFCC-------LMYAHLKNQIDSEIVQKIIVDAVEIEK 258 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + +P V L Q+++++A+ G E + T NP+ +M V+ L Sbjct: 259 KSLLKALPIIKVNLKIDEMNQFIEYVADSILVAFGNEKHYNAT-NPYEFMENVV-LPGNT 316 Query: 334 NFFETRVTEYQQGAEL 349 N + + Q+ +E Sbjct: 317 NSLAKTIADAQKASEF 332 >gi|332672470|ref|YP_004421714.1| Ribonucleotide reductase, small subunit [Campylobacter phage NCTC12673] gi|327493647|gb|AEA86506.1| Ribonucleotide reductase, small subunit [Campylobacter phage NCTC12673] Length = 378 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 67/312 (21%), Positives = 131/312 (41%), Gaps = 35/312 (11%) Query: 38 KYGWAWEKYLSACNNH-----WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF---F 89 +Y W L + + W P E+ M + KS L + + IK NL F Sbjct: 27 RYDWYSHNQLESLDRKQQAQLWFPEEISM---IHEPKSFIELPEHNQRQIKANLTFQTLM 83 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 S ++ +NI++ + C L QA+ E +HS ++ +II S+ + ++F+ Y Sbjct: 84 DSGQNRGLDNILIPLVTSSGLEGC---LKTQAYFEYIHSRSYSHIIKSVFPNPTDVFDEY 140 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E P I + N + ++L + D ++ + + + EG+ FY F Sbjct: 141 CEYPEIKTRINDEIDTYESLEG---SLEENDENKLKILEACLRIQFLEGVKFYVSFLTTY 197 Query: 210 SLGR----ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN----PHLWTKEFQQKS 261 + + NK+ + + + I DE +HL ++ ++ E HL+ +K+ Sbjct: 198 MINKYSAGGNKIPNLTKIIKLINNDEDIHLVIFSFILKTLRSEQHQGFSHLFDDSLSRKA 257 Query: 262 RTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R + + E+ +A + G + GL + + +++F + R + G +P+ Sbjct: 258 RKIAKKVYQDELEWAKYLLSMGPIPGLTIENIDGFLKFFVDDRLKKCGFQPI-------- 309 Query: 321 PWMSEVIDLKKE 332 W + DL KE Sbjct: 310 -WNAPKTDLVKE 320 >gi|269865675|ref|XP_002652006.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063328|gb|EED42049.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 183 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 8/146 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +HS + +I +L D+ E LFN Sbjct: 95 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154 Query: 151 EVPSITAKANWALQYTQTLSSPSFTT 176 +PSI KA WA ++ S SF T Sbjct: 155 NIPSIRKKALWAQKWIA--SDTSFDT 178 >gi|307107666|gb|EFN55908.1| hypothetical protein CHLNCDRAFT_57791 [Chlorella variabilis] Length = 849 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 74/334 (22%), Positives = 128/334 (38%), Gaps = 66/334 (19%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSA--------------CNNHWMPT-------EVP 60 K +L+ D + PLK W +Y A C H +V Sbjct: 557 KPLLDENPDRYCMFPLKEDRVWSQYKKAEASRPSGQAPNDPLCMAHTTFWTTFWTAEDVD 616 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 D W+ + L ER + L + A+S+ L+ +N+V + E R + Q Sbjct: 617 FSSDARDWQDR--LAPGERSFLSSVLAYLAASDRLIQHNVVARFMIDVELAEARAFYAFQ 674 Query: 121 AFEEAVHSHTFQYIITSL-GLDEGELFNMYREV---PSITAKANWALQYTQTLSSPSFTT 176 F++ VH+ I+ +L E +L + R V P+ AKA W ++ Sbjct: 675 LFKKNVHTEMVSAILAALFAGKEEQLAAVLRTVLALPAFQAKAAWVRKWINR-------- 726 Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236 Q ++ G+ TG A L I RDE +H+ Sbjct: 727 ------QATAAAALPPLLLPRGLLPGTGHATDL-----------------ISRDEGVHVE 763 Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296 + + ++ +K +++ ++ EA E A+ +P GL A + E+Y+ Sbjct: 764 SAGVMYSLLR-------SKLTDSQAQGIVGEAVEAERAFVCGQLPLEATGLEAGAMEEYL 816 Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 Q++ +R +G PL++ NP PW+ E I +K Sbjct: 817 QYVGDRLLGALGHAPLYRVAANPLPWL-EGIAMK 849 >gi|45478633|ref|NP_995489.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|52788092|ref|YP_093920.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis] gi|145597234|ref|YP_001154698.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Pestoides F] gi|162417832|ref|YP_001604568.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Angola] gi|229896974|ref|ZP_04512133.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit [Yersinia pestis Pestoides A] gi|45357286|gb|AAS58680.1| putative ribonucleoside-diphosphate reductase beta subunit [Yersinia pestis biovar Microtus str. 91001] gi|52538021|emb|CAG27446.1| putative ribonucleoside-diphosphate reductase beta subunit [Yersinia pestis] gi|145213002|gb|ABP42407.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Pestoides F] gi|162350804|gb|ABX84753.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis Angola] gi|229700010|gb|EEO88050.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit [Yersinia pestis Pestoides A] Length = 380 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 67/296 (22%), Positives = 126/296 (42%), Gaps = 27/296 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + +K L + ER + NL + +S+ + + +S PE Sbjct: 49 WRPEEVDITTDRIDFNTK--LQEHERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPEL 106 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 ++ +F E +HS ++ +II + D +F+ + SI+++ + + T Sbjct: 107 ETWVETWSFSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIISRAVSISSEYDRLYEMT 166 Query: 167 ---QTLSSPSFT-------TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 Q L F G Q L V E + FY FA + G Sbjct: 167 CARQHLGEDEFERLYVSEFDGKPYPLQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKL 226 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA-- 274 + G + ++I RDE+LH +I ++ L K + + +++ T++++A Sbjct: 227 LEGNTKIMRFIARDEALHCEGTERMIRFMRTGREGLMWKMIAAEEESFIYQ-TMMDVAGQ 285 Query: 275 ---YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSE 325 +A G +GLNA + Y+++ N ++GL PLF + ++P WM++ Sbjct: 286 EMRWADYLFKDGSMIGLNADILKSYVKYRTNLAMRRLGLRPLFPEIKDDPLVWMNK 341 >gi|320546423|ref|ZP_08040738.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus equinus ATCC 9812] gi|320448808|gb|EFW89536.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus equinus ATCC 9812] Length = 320 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/289 (23%), Positives = 121/289 (41%), Gaps = 46/289 (15%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+D E+ ++ + G +++ + + V Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDQEKDLVGKVFGGLTLLDTMQSESGV 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N E+ +I Sbjct: 76 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEAIFEWTNK 127 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G DA Q+ + F+ E FY+GF L NK+ Sbjct: 128 NEFLQKKAKIINDIYENG--DALQKKIASTFL-----ETFLFYSGFFTPLYYLGNNKLAN 180 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270 +AE + I+RDES+H G + +++ K + W + +Q + +L Sbjct: 181 VAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDKQDELRDWMYDLLYQLYENEENYTKSL 240 Query: 271 L-EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 E+ + E M ++++ AN+ +G +PLF T N Sbjct: 241 YDEVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 276 >gi|326804582|ref|YP_004327453.1| Ribonucleotide-diphosphate reductase beta subunit [Salmonella phage Vi01] gi|301795232|emb|CBW37950.1| Ribonucleotide-diphosphate reductase beta subunit [Salmonella phage Vi01] Length = 367 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 129/299 (43%), Gaps = 18/299 (6%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y + W P EV + D A + + L+ E+ + NL +S+ A Sbjct: 43 YEKGLSQFWRPEEVDVTKDKADFAT---LSAAEQHIYFSNLKRQTMLDSIQGAAPFEAFG 99 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 S PE + +L +EA+HS ++ +I+ + D G +F+ +V I A Y Sbjct: 100 PWASTPEAQFAILEWTRQEAIHSLSYTHILRNTVNDPGIVFDHVLDVQEIVDCAGQISVY 159 Query: 166 --------TQTLSSPSFTT-GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-AN 215 ++ +FT +A + F + LF + EG+ FY FA + + N Sbjct: 160 YDDMVRYSGMRMAGRAFTREDIMNAKRAFWRALFAANSL-EGVRFYVSFACSWAFMQFLN 218 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH--LWTKEFQQKSRTMLHEATLLEI 273 KM G A+ + I RDE HL +N++ + +P + +E + + M + E Sbjct: 219 KMEGNAKIIRQIARDEQDHLILTQTFLNRLPLLDPDFGIIREELRGEMTQMYVDVVNQEK 278 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDLK 330 +A+ G +GLNA Q + ++A R IG P +NP PW++E +D K Sbjct: 279 EWANYLFKDGSMLGLNANILHQMVDWLATHRMGAIGHPYPGQARKDNPVPWINEWLDNK 337 >gi|269867180|ref|XP_002652512.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220062330|gb|EED41544.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 196 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 11/161 (6%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150 +V N+V + E + + Q E +HS + +I +L D+ E LFN Sbjct: 95 GIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIE 154 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 +PSI KA WA ++ S T+ DA ++D V Sbjct: 155 NIPSIRKKALWAQKWI-----ASDTSSIPDALHCCVKDFLV 190 >gi|269864962|ref|XP_002651756.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|269866721|ref|XP_002652369.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220062645|gb|EED41686.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063933|gb|EED42300.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 135 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 11/130 (8%) Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 M G+ + I RDE LH +F + H + ++ EA +E + Sbjct: 1 MPGLTFSNELISRDEGLHTDFACLL---------HKYINNKCTVIEDIVREAVAIEQEFL 51 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336 E++P +G+N QY++F+A+R +G + ++ + NPF +M E I L+ + NFF Sbjct: 52 SESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFF 109 Query: 337 ETRVTEYQQG 346 E R YQ+G Sbjct: 110 ERREANYQKG 119 >gi|312865304|ref|ZP_07725532.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] gi|311099415|gb|EFQ57631.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] Length = 316 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 118/276 (42%), Gaps = 26/276 (9%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A W+ T VP+ +DL WK L+D E+ ++K+ +G A ++L + Sbjct: 18 YVWDK---ATAQFWLDTRVPVSNDLLDWKQ---LSDLEKTVVKKAVGGLALLDTLQSEEG 71 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAK 158 + AI ++ + F E++H+ T+ I+ SL D +++ P + K Sbjct: 72 LYAIKKNARTQKELAVFSDFNFMESIHAKTYGTILISLNTFKDIEAIYDWMDNDPRMQFK 131 Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 A Y Q SP LQ + V + EG+ +Y+ F L NK+ Sbjct: 132 AQRVNDYYQN-GSP-------------LQ-VMVASIFLEGILYYSNFFIPLWYRGQNKLA 176 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + ++RDES+H + Q E +FQ+ L E E AY E Sbjct: 177 NLAELIKLVIRDESVHGTYLGYKFRQGFDELSPEDQADFQKWMYGFLDELLENEFAYTEE 236 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 +GL + ++++ AN+ +G F+ Sbjct: 237 VYSD--IGLE-DDIKTFVKYNANKSLQNMGFGIYFE 269 >gi|66802406|ref|XP_629985.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4] gi|60463390|gb|EAL61578.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4] Length = 257 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 31/196 (15%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N++ PL W+ Y N W+ E+ DD W+ K LT+DER L FF + Sbjct: 80 NEISPLD---IWKMYKKTLANQWVVEEIESSDDGLDWEKK--LTNDERDFFSNVLAFFVA 134 Query: 92 SESLVANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---EL 145 S ++ N+ R +S PE + + Q + +HS T+ +I + D+ +L Sbjct: 135 SCGIINKNL----NRFMSKVQIPEAKCFYNYQIHIKYLHSETYSLLIETCIKDKNIKDKL 190 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 FN +P + KA WAL++ E + V V FE ++F F Sbjct: 191 FNAIETIPCVKKKAEWALKWI----------------NESFEKRLVALVAFESIFFSGSF 234 Query: 206 AQILSLGRANKMVGIA 221 I L + + M G+ Sbjct: 235 RIISLLKKRSLMQGLT 250 >gi|219883069|ref|YP_002478233.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus A6] gi|219862075|gb|ACL42416.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus A6] Length = 326 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/267 (22%), Positives = 113/267 (42%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P ++P+ +D+ W + LT +E+L+ R +++ +++ Sbjct: 32 VNNFWLPEKIPLSNDVQSWAT---LTPEEQLLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P L AF E+VH+ ++ I ++L + E F E + KA + Y Q Sbjct: 89 TPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSEENVHLQKKAQIVMDYYQ 148 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 149 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 193 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 ++DE++H + I Q +E + E Q + +L E E+ Y H+ VG Sbjct: 194 IKDEAVH-GYYIGYKFQRGLEKETAERREELQAYAYELLDELYENEVQYTHDLYDG--VG 250 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 L A ++++ + AN+ +GL+P+F Sbjct: 251 L-AEDVKKFLHYNANKALMNLGLDPVF 276 >gi|256422447|ref|YP_003123100.1| ribonucleotide reductase [Chitinophaga pinensis DSM 2588] gi|256037355|gb|ACU60899.1| ribonucleotide reductase [Chitinophaga pinensis DSM 2588] Length = 324 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 76/330 (23%), Positives = 134/330 (40%), Gaps = 26/330 (7%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 DKR+ Q P +Y + + + W+ EV D + S L ER Sbjct: 5 DKRL--------QYKPFEYPEVLQFTEAINKSFWVHAEVDFTADTQDFHSH--LNPAERT 54 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 ++ +L A E V + +Y HL PE A E HS + ++ LG Sbjct: 55 AVRNSLLAIAQIEVAV-KSFWGNLYNHLPKPEMNGLGSTFAECEFRHSEAYSRLVEVLGY 113 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + F EVP I + ++Y S + +T T+ E+ L +F ++ E + Sbjct: 114 NSQ--FEKLVEVPVIRQR----IEYLSDALSNAKSTDTR----EYTISLILFSILIENVS 163 Query: 201 FYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 ++ FA ILS R M ++ + DE +H N GI +IN+I+ E P ++ + Sbjct: 164 LFSQFAIILSFTRFKGLMKNVSNIIAWTSVDEQIHANAGIYLINKIREEYPEMFDEATIT 223 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYT-- 316 + ++ E+ +E +G + ++ +M++ A+ +I L LF + Sbjct: 224 RVSNLVKESIEVESNILDWIFSEGKIDTVSKEHLVNFMKYRADDSLKKINLPALFNISTE 283 Query: 317 -ENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 P W E + +FF R +Y + Sbjct: 284 DNKPMLWFEEEVFANSLDDFFAKRPVDYTK 313 >gi|38638230|ref|NP_944413.1| ribonucleotide reductase subunit 2 [Psittacid herpesvirus 1] gi|81987371|sp|Q6UDJ1|RIR2_PSHV1 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|34500236|gb|AAQ73719.1| unknown [Psittacid herpesvirus 1] Length = 313 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/283 (22%), Positives = 116/283 (40%), Gaps = 27/283 (9%) Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K + LT+DE K F A+++ LV N+ + + + Y Q E VHS Sbjct: 44 KDVDCLTEDECDFYKFVFCFLAAADDLVNVNLD-NLVTLFPQKDIQHYYAEQIRIETVHS 102 Query: 129 HTFQYIITSLGLDEGELFNMYR----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 T+ + ++ + Y + +I K +W + + D+ Sbjct: 103 RTYSAVQLVFFRNDAIARDRYVLEAVKDGAIRRKIDW------------LSRIQNEGDEL 150 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L + ++ ++ EG++F + FA I L R + + I RDE++H + N Sbjct: 151 TLPEKYILMILIEGIFFVSSFAAISYLRRHSIFQVTCQSNDLISRDETIHTTASCCIYNN 210 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 +P K Q + EA +E + PK ++ + + +++F ANR Sbjct: 211 WLKGHPKPSVKRIHQ----LFKEAVEIECDFLVARAPKAARLIDIDAIQSFVRFTANRWL 266 Query: 305 HQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQ 344 IG+ ++ ++P P + ++ L+K NFFE R T Y Sbjct: 267 SMIGVPTIY---DDPAPDPTFPLALMSLEKNVNFFEHRSTAYS 306 >gi|70727160|ref|YP_254076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus haemolyticus JCSC1435] gi|68447886|dbj|BAE05470.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus haemolyticus JCSC1435] Length = 322 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 22/296 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LT+DE+ KR L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170 + A E +H+ ++ +I T+L + L + + E P + K++ ++ L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIIENYHKLW 141 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + DQ + V V E FY+GF L L KM E + I+ D Sbjct: 142 GKEASI----YDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194 Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 ES+H F G+D ++ E ++ ++ +L + E++Y H M +GL + Sbjct: 195 ESIHGVFTGLDA-QSLRNELSENEKQKADKEMYKLLEDLYANEVSYTH--MLYDDIGL-S 250 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTEY 343 Y+Q+ N+ +G EP F+ E F P + +D K +FF + Y Sbjct: 251 EDVLNYVQYNGNKALSNLGFEPYFE--EKEFNPIIENALDTTTKNHDFFSVKGDGY 304 >gi|116617385|ref|YP_817756.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096232|gb|ABJ61383.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 325 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 120/281 (42%), Gaps = 39/281 (13%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ +++ ER + G + ++L + + + Sbjct: 25 TWEK---LTQQFWLDTRIPISNDLRTWRGN--MSEQERQTMNLVFGGLTTLDTLQSQDGM 79 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + +N + L F E+VH+ ++ I +L N E+ I A + Sbjct: 80 AQLKLDATNQKEEAVLNNIQFMESVHAKSYSSIFETL--------NEKVEIEKIFEWADS 131 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + G+ A Q+ + +F+ E FY+GF L NKM+ Sbjct: 132 NEFLQYKANRINDIYHNGS--ALQKKIASVFL-----ETFLFYSGFYTPLYFLGHNKMLN 184 Query: 220 IAEQYQYIMRDESLH---LNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 +AE + I+RDES+H + + + N+I E E Q +L+E E Y Sbjct: 185 VAEIIKLIIRDESVHGTYIGYKFQIGFNKISAEER----TELQSWMYDLLYELYENEEKY 240 Query: 276 AHETMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313 HE + EQ + F+ AN+ +G EP+F Sbjct: 241 THELYD------DLGWTEQVLTFLRYNANKALMNLGQEPMF 275 >gi|227431268|ref|ZP_03913322.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353030|gb|EEJ43202.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 327 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 120/281 (42%), Gaps = 39/281 (13%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ +++ ER + G + ++L + + + Sbjct: 27 TWEK---LTQQFWLDTRIPISNDLRTWRGN--MSEQERQTMNLVFGGLTTLDTLQSQDGM 81 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + +N + L F E+VH+ ++ I +L N E+ I A + Sbjct: 82 AQLKLDATNQKEEAVLNNIQFMESVHAKSYSSIFETL--------NEKVEIEKIFEWADS 133 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + G+ A Q+ + +F+ E FY+GF L NKM+ Sbjct: 134 NEFLQYKANRINDIYHNGS--ALQKKIASVFL-----ETFLFYSGFYTPLYFLGHNKMLN 186 Query: 220 IAEQYQYIMRDESLH---LNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 +AE + I+RDES+H + + + N+I E E Q +L+E E Y Sbjct: 187 VAEIIKLIIRDESVHGTYIGYKFQIGFNKISAEER----TELQSWMYDLLYELYENEEKY 242 Query: 276 AHETMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313 HE + EQ + F+ AN+ +G EP+F Sbjct: 243 THELYD------DLGWTEQVLTFLRYNANKALMNLGQEPMF 277 >gi|156743708|ref|YP_001433837.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus castenholzii DSM 13941] gi|156235036|gb|ABU59819.1| ribonucleotide reductase [Roseiflexus castenholzii DSM 13941] Length = 295 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/263 (22%), Positives = 118/263 (44%), Gaps = 28/263 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P+++ D+ W++ LTDDER ++ R F + E V +++ + + Sbjct: 33 WNPSDIDFSQDMRDWQT---LTDDERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 89 Query: 114 RQYLLRQAF--EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 + L +F EEA H+ F +T + G+L + + AN+ + L Sbjct: 90 EEELFLTSFLWEEAKHTDFFNRFLTEVAGVTGDLSHYH--------TANYRALIHEAL-- 139 Query: 172 PSFTTGTKDADQEFLQDL--FVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIM 228 P+ +D Q + + ++ EG+ TG+ A L R N M G + + Sbjct: 140 PAAMERLRDDPSPEAQAIASLTYNMIVEGVLAETGYHAYFTMLERRNLMPGTRKGIGLLK 199 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA-HETMPKGFVGL 287 +DES H+ +G+ +++++ P LW ++ + +++ +++ A+A +E +P G Sbjct: 200 QDESRHIAYGVYLLSRLINAEPRLWDVVVERMNELVVYAMGVIDDAFACYEVVPFGL--- 256 Query: 288 NAPSCEQYMQFIAN---RRCHQI 307 S + +MQF RR +I Sbjct: 257 ---SHDDFMQFAMGQFERRLDRI 276 >gi|312883652|ref|ZP_07743377.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] gi|309368875|gb|EFP96402.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] Length = 323 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/277 (22%), Positives = 113/277 (40%), Gaps = 48/277 (17%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +D+ WK LT+DE+++ R L + ++ V +++ R Sbjct: 32 NFWLPEKIPLSNDIQSWKQ---LTEDEQVLTTRVFTGLTLLDTIQNTVGAPVLMKDAR-- 86 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 P L AF EAVH+ ++ I ++L P I WA + Sbjct: 87 -TPHEEAVLSNIAFMEAVHARSYSSIFSTLC-----------TTPQIDEAFRWAEE---- 130 Query: 169 LSSPSFTTGTKDADQEFLQDLF-----VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 +P K ++LQD + V E FY+GF + K+ A+ Sbjct: 131 --NPLLQQKAKIILDDYLQDSGPLEKKIASVFLESFLFYSGFYLPMHWSSRAKLTNTADL 188 Query: 224 YQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 + I+RDE++H G +++ + E + + K+ ++L +E Y Sbjct: 189 IRLIIRDEAIHGYYIGYKFQLGYQELDEARQE-------QLKDKAYSLLLSLYDIECQYT 241 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + VGL + ++ + AN+ +G E LF Sbjct: 242 ESLYDQ--VGL-TEDVKHFLHYNANKALMNLGFEALF 275 >gi|325955614|ref|YP_004239274.1| ribonucleotide reductase [Weeksella virosa DSM 16922] gi|323438232|gb|ADX68696.1| ribonucleotide reductase [Weeksella virosa DSM 16922] Length = 324 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 65/297 (21%), Positives = 119/297 (40%), Gaps = 18/297 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ +EV D + S L ER IK +L A E V IY H PE Sbjct: 30 WVHSEVDFTADTQDFHSHLNLA--ERTAIKHSLLAIAQIEVAV-KTFWGDIYDHFPKPEF 86 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 A E HS + ++ LG ++ F ++P I + ++ S + Sbjct: 87 NGLGATFAECEFRHSEAYSRLLEVLGYNDD--FQTLLDIPVIKGRVDYL--------SNA 136 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDES 232 + ++ L +F ++ E + ++ FA ILS R M ++ + DE Sbjct: 137 LKDAKSSDRKSYVISLILFSILIENVSLFSQFAIILSFTRFKGYMKNVSNIIAWTSVDEQ 196 Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPS 291 +H N GI ++N+IK E P +++E Q+ + ++ + +E +G + + Sbjct: 197 IHANAGIYIVNKIKEEFPDFFSEETIQEIKNVVTHSIEVESQILDWIFEQGEIETIKKKD 256 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +M++ + +IG ++ T P W E + +FF R +Y + Sbjct: 257 LLNFMKYRVDESMLKIGFGKIYNITAEQYQPMVWFEEEVFANSLDDFFAKRPVDYTK 313 >gi|251797995|ref|YP_003012726.1| ribonucleotide-diphosphate reductase subunit beta [Paenibacillus sp. JDR-2] gi|247545621|gb|ACT02640.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. JDR-2] Length = 318 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 108/266 (40%), Gaps = 27/266 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+P+ DD W ++D ER + K LG +++ + I H+ + Sbjct: 26 WTDEEIPLSDDKMDWME---MSDTERTVYKNVLGGLTLLDTIQGGVGMPKILEHVDGLQR 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKANWALQYTQTLSS 171 + L + E +H+ ++ I T+L E E+ +I + N LQ TL S Sbjct: 83 KAVLAFMSMMEQIHAKSYSSIFTTLASTE--------EIDAIFQWVETNEQLQKKATLVS 134 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 S+ G + Q L V E FY+GF L L KM E I+RDE Sbjct: 135 -SWYQGIETKQQ--LYKAMAASVFLESYLFYSGFFYPLYLAGQGKMTSSGEIIDLILRDE 191 Query: 232 SLH-LNFGI---DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 S+H L G+ ++ NQ E ++ Q K TL E + +GL Sbjct: 192 SIHGLYVGVLAQELFNQFTPE------EQAQLKEEVFALLNTLYENEVVYTDNLYSPIGL 245 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313 + Y+++ AN+ +G EP F Sbjct: 246 QE-DVKAYVRYNANKALMNLGFEPYF 270 >gi|307268568|ref|ZP_07549940.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX4248] gi|306515057|gb|EFM83600.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX4248] Length = 321 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 66/280 (23%), Positives = 117/280 (41%), Gaps = 28/280 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L+D E+ + G F +++ + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGFTLLDTVQSESGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 DQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIDDIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + GT + + V E FY+GF L NK+ Sbjct: 127 NKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I Q+ E P + + +L+E E Y E Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEE 238 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 +G + ++++ AN+ +G++PLF T N Sbjct: 239 LYDD--LGW-TEEVKTFLRYNANKALMNLGMDPLFADTAN 275 >gi|227537625|ref|ZP_03967674.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum ATCC 33300] gi|300771015|ref|ZP_07080892.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobacterium spiritivorum ATCC 33861] gi|227242511|gb|EEI92526.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum ATCC 33300] gi|300762288|gb|EFK59107.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobacterium spiritivorum ATCC 33861] Length = 328 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 71/299 (23%), Positives = 135/299 (45%), Gaps = 19/299 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE D+ WK GL+ D + K+ LG ++L ++ + I H+ + + Sbjct: 30 WIDTEYIPSKDIDSWK---GLSWDMKECYKKALGGLTLLDTLQSHTGMPKIIDHIDSLQN 86 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L EA+H+ ++ I T++ ++F + + KA +Y +++ Sbjct: 87 KAVLSYMCMMEAIHAKSYSTIFTTVSTTNEINDVFGWVEQNKHLQFKAQTIDKYYRSIDK 146 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 T D+E L V+ E FY+GF L L +MV A+ + I+ DE Sbjct: 147 EDPT------DEELFMALGA-SVLLESFLFYSGFFLPLWLCGQGQMVASADIIKKIIADE 199 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + I P+ +E + + T+L+E E+ Y E VGL A Sbjct: 200 SIHGVFVGLIAQDIFRRIPN--KEEVKARFLTLLNELYENELKYTEEIYT--VVGLTA-E 254 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 ++Y+++ N+ +G +P+F+ + NP ++ + + +FF + T Y++ E+ Sbjct: 255 VKEYVRYNGNKALMNLGFDPIFEVKQVNPIV-LNGLNTETTQHDFFSKKSTNYEKATEI 312 >gi|295698298|ref|YP_003602953.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus Riesia pediculicola USDA] gi|291156973|gb|ADD79418.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus Riesia pediculicola USDA] Length = 375 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 68/295 (23%), Positives = 120/295 (40%), Gaps = 30/295 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D ++S L E+ + RNL + +S+ + + A +S PE Sbjct: 48 WRPEEIDISKDRIDYQS---LKLYEKKIFIRNLQYQILLDSIQSRSPNCAFLPIVSLPEV 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN----------WAL 163 ++ +F E +HS ++ YII ++ D +F+ I +A + Sbjct: 105 ENWIETWSFSETIHSRSYTYIIRNIIDDPSLIFDKIVSNQEIIDRAKDISFYYDHLIQLI 164 Query: 164 QYTQTLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 + QT K +E + L++ + E + FY FA + M Sbjct: 165 RLYQTFGEGIHKIHEKKVTVSLRELKKSLYLCLISVNALESIRFYVSFACSFAFAEKELM 224 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR--TMLHEATLLEIA- 274 G A+ + I RDE+LH+ +IN I KE + S+ M+ + L ++ Sbjct: 225 EGNAKIIKLIARDEALHVTGTQHMIN---IMQSSKEDKEMIEISKECLMICQKIFLNVSD 281 Query: 275 ----YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +A G +GLN ++Y+ +I R IGL+ NP PW++ Sbjct: 282 QEKRWADYLFSNGNLIGLNKKILKEYIDYITEVRMRAIGLKKDLIKKINPIPWIN 336 >gi|66391280|ref|YP_238601.1| ORF025 [Staphylococcus phage Twort] gi|62637210|gb|AAX92321.1| ORF025 [Staphylococcus phage Twort] Length = 349 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 75/303 (24%), Positives = 129/303 (42%), Gaps = 33/303 (10%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 A + W+P + + D++ W N LTD E+ K+ L ++ + + I H Sbjct: 37 ATTSFWLPEDFDISRDVSSW---NKLTDIEKDTYKKVLAGLTGLDTKQSVEGMSLIAHHE 93 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREV-PSITAKANWALQY 165 Q F E++H+ ++ +I T+L L++ L N + E P + KA + + Sbjct: 94 PRTRFAQVYTAFDFYESIHAKSYSHIFTTLLLNKETNYLLNEWVEQEPHLKKKAQYIGYF 153 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 + L P+ +T + + V E FY+GF L L MV Sbjct: 154 YEKLEQPNPSTFDRYMAK-------VASAFLESALFYSGFYYPLLLSGQGVMVQSGTTIY 206 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET----MP 281 I +DE+ H G+ V +++ L T+E Q K+ +++E LLE+ Y +E M Sbjct: 207 KITQDEAYH---GVGVGYTAQLDYQEL-TEEEQSKADALMYE--LLEVLYENEVSYSHML 260 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV-----IDLKKEKNFF 336 +GL +Y+Q+ NR +G + F NP P+ V +D +FF Sbjct: 261 YDKLGLTEDVI-RYVQYNFNRALANLGFDDYF----NPEPFNPIVNNQTNVDKLSNADFF 315 Query: 337 ETR 339 T+ Sbjct: 316 STK 318 >gi|34419511|ref|NP_899524.1| aerobic ribonucleoside diphosphate reductase small subunit [Vibrio phage KVP40] gi|34333192|gb|AAQ64347.1| aerobic ribonucleoside diphosphate reductase small subunit [Vibrio phage KVP40] Length = 374 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 64/290 (22%), Positives = 124/290 (42%), Gaps = 24/290 (8%) Query: 54 WMPTEVPMQDDLALWKSK-NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W P EV DL L + + + + + + +NL + + +S+ +A S+ Sbjct: 49 WRPEEV----DLTLDSQEFDRMPEHWKHVFTQNLKYQSLLDSVQGRAPNIAFLPICSDNS 104 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172 ++ F E +HS ++ +I+ +L + +F+ SI A+A ++ L + Sbjct: 105 LENWITTWDFSETIHSRSYTHIMRNLYSNPSAVFDEIVLDKSIMARAEAVTEHYDKLIAE 164 Query: 173 S-----FTTGTKDADQEFLQDLFVFYVVF---------EGMWFYTGFAQILSLGRANKMV 218 + T D +Q+ V ++ E + FY FA + M Sbjct: 165 TQKLNQLKTMNLDEAHILMQESAVKEALYLCMHAVNALEAIRFYVSFACTFNFAEQGIME 224 Query: 219 GIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIA 274 G A+ + I RDE LHL +I+ Q ++P + + Q ++ + + E Sbjct: 225 GNAKVMKLIARDEQLHLKGTQALISIWQNYKDDPEMAEISLRLQPEAEKIFMQVVDQEKE 284 Query: 275 YAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +AH +G V GLNA +Y++++A+ R +GL + ++P PW+ Sbjct: 285 WAHSLFSQGTVPGLNAQILCEYVEYLADSRMRSVGLNSPYPRRKHPLPWI 334 >gi|27467432|ref|NP_764069.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis ATCC 12228] gi|57866341|ref|YP_187991.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis RP62A] gi|251810165|ref|ZP_04824638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis BCM-HMP0060] gi|282875687|ref|ZP_06284558.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis SK135] gi|293368193|ref|ZP_06614822.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W2(grey)] gi|27314975|gb|AAO04111.1|AE016745_210 ribonucleoside-diphosphate reductase minor subunit [Staphylococcus epidermidis ATCC 12228] gi|57636999|gb|AAW53787.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus epidermidis RP62A] gi|251806217|gb|EES58874.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis BCM-HMP0060] gi|281295714|gb|EFA88237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis SK135] gi|291317616|gb|EFE58033.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W2(grey)] gi|329723280|gb|EGG59810.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU144] gi|329736749|gb|EGG73014.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU028] gi|329737954|gb|EGG74178.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU045] Length = 322 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 22/296 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LTD E+ K+ L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTDSEKNTFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170 + A E +H+ ++ +I T+L + L + + E P + K++ ++ L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIVENYHKLW 141 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + DQ + V V E FY+GF L L KM E + I+ D Sbjct: 142 GKEASI----YDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194 Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 ES+H F G+D ++ E ++ Q+ +L+E E++Y H + +GL A Sbjct: 195 ESIHGVFTGLDA-QSLRNELSESEKQKADQEMYKLLNELYDNEVSYTH--LLYDDIGL-A 250 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343 Y+++ N+ +G EP F+ E F P + +D K +FF + Y Sbjct: 251 EDVLNYVRYNGNKALSNLGFEPYFE--EREFNPIIENALDTSTKNHDFFSVKGDGY 304 >gi|242242101|ref|ZP_04796546.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis W23144] gi|242234414|gb|EES36726.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis W23144] gi|319401190|gb|EFV89405.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus epidermidis FRI909] Length = 322 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 22/296 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LTD E+ K+ L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTDSEKNTFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170 + A E +H+ ++ +I T+L + L + + E P + K++ ++ L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIVENYHKLW 141 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + DQ + V V E FY+GF L L KM E + I+ D Sbjct: 142 GKEASI----YDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194 Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 ES+H F G+D ++ E ++ Q+ +L+E E++Y H + +GL A Sbjct: 195 ESIHGVFTGLDA-QSLRNELSESEKQKADQEMYKLLNELYDNEVSYTH--LLYDDIGL-A 250 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343 Y+++ N+ +G EP F+ E F P + +D K +FF + Y Sbjct: 251 DDVLNYVRYNGNKALSNLGFEPYFE--EREFNPIIENALDTSTKNHDFFSVKGDGY 304 >gi|308177564|ref|YP_003916970.1| ribonucleoside-diphosphate reductase subunit beta [Arthrobacter arilaitensis Re117] gi|307745027|emb|CBT75999.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter arilaitensis Re117] Length = 324 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 63/270 (23%), Positives = 116/270 (42%), Gaps = 25/270 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W + LT+DE+L+ R ++L +++ Sbjct: 32 VNNFWLPEKVPLSNDIQSWGT---LTEDEKLLTMRVFTGLTLLDTLQGTVGAVSLIPDAL 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L + E F E ++ KA Q Sbjct: 89 TPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWSTENVNLQKKA-------Q 141 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 + S+ G ++ L E FY+GF + K+ A+ + I Sbjct: 142 IIE--SYYHGEDPLKRKIASTL------LESFLFYSGFYLPMHWSSHAKLTNTADLIRLI 193 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + I Q +EN K E + + +++E E+ Y H+ VG Sbjct: 194 IRDEAVH-GYYIGYKFQKGLENETEERKQELKDYTFELMYELYENEVQYTHDLYDP--VG 250 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 L + ++++ + AN+ +G E +F T Sbjct: 251 L-SEDVKKFLHYNANKALMNLGYEAMFPST 279 >gi|213646443|ref|ZP_03376496.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824706|ref|ZP_06544205.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 240 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL- 252 E + FY FA + M G A+ + I RDE+LHL ++N ++ +++P + Sbjct: 68 LEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMA 127 Query: 253 -WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE 310 +E +Q+ + +A E +A G +GLN QY+++I N R +GL+ Sbjct: 128 EIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD 187 Query: 311 PLFKYTENPFPWMS 324 F+ NP PW++ Sbjct: 188 LPFQTRSNPIPWIN 201 >gi|56964873|ref|YP_176604.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus clausii KSM-K16] gi|56911116|dbj|BAD65643.1| ribonucleoside-diphosphate reductase beta chain [Bacillus clausii KSM-K16] Length = 334 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 70/298 (23%), Positives = 123/298 (41%), Gaps = 20/298 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P EV + DL WK LT E+ + L ++ N + + H+ + Sbjct: 30 WLPEEVALNGDLLTWKY---LTPAEKDTYMKVLAGLTLLDTEQGNTGMPLVAEHVQGHQR 86 Query: 114 RQYL-LRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170 + L E AVH+ ++ I +L E +LF + P + KAN + Sbjct: 87 KAVLNFMAMMENAVHAKSYSNIFMTLATSEEINDLFEWVKVNPRLQKKANTIV------- 139 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 S K D L V V E FY+GF L K++ E I+RD Sbjct: 140 --SIYKDIKRGDDISLFKALVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E++H + + +I + KE Q + +L E E+ Y + + VGL + Sbjct: 198 EAIHGVYIGLLAQEIYNKQSPDTQKELHQFAIELLDELYKNELLYTEDLYDQ--VGL-SH 254 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGA 347 ++++++ AN+ +G +P F+ E+ P + ++ K K +FF + Y++ Sbjct: 255 DVKKFIRYNANKALMNLGFDPYFE-DEDINPIVLNGLNTKTKSHDFFSMKGNGYKKAT 311 >gi|312130784|ref|YP_003998124.1| ribonucleotide reductase [Leadbetterella byssophila DSM 17132] gi|311907330|gb|ADQ17771.1| ribonucleotide reductase [Leadbetterella byssophila DSM 17132] Length = 324 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 70/306 (22%), Positives = 123/306 (40%), Gaps = 19/306 (6%) Query: 46 YLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + SA N +W+ +EV D + S L+ ER +K +L A E + + Sbjct: 21 FTSAINKAYWVHSEVDFTADTQDFHSH--LSPAERSAVKNSLLAIAQIE-VAVKTFWGNL 77 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164 Y H PE A E HS + ++ LG + F E+P I + + Sbjct: 78 YDHFPKPEFNGLGTTFAECEFRHSEAYSRLLEVLGYNNE--FQKLLEIPVIKQRVEY--- 132 Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQ 223 L T ++D ++++ L +F ++ E + ++ FA ILS R M ++ Sbjct: 133 ----LGGVLKDTRSEDR-KKYVISLILFTILIENVSLFSQFAIILSFTRFKGYMKNVSNI 187 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + DE +H N GI ++N I+ E P + E + + E+ +E +G Sbjct: 188 IAWTSVDEQIHANGGIYIVNTIRDEFPDFFDPETITQIEDTVRESIEVEERILDWIFSEG 247 Query: 284 FVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETR 339 + + +M+F + +IG PLF + P W E + +FF R Sbjct: 248 EIEIIKKKDLLNFMKFRIDDSMKKIGFSPLFHVSSADYQPIAWFEEEVFANSLDDFFAKR 307 Query: 340 VTEYQQ 345 +Y + Sbjct: 308 PVDYTK 313 >gi|296117839|ref|ZP_06836422.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium ammoniagenes DSM 20306] gi|295969070|gb|EFG82312.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium ammoniagenes DSM 20306] Length = 328 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 26/190 (13%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W++ D L + L + + V +++ H Sbjct: 37 TTNFWLPEKIPVSNDVQSWRNMTAQEQDATLKVFTGLTVLDTLQGTVG---AVSLIPHAV 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA-----LQ 164 P+ AF E+VH+ ++ I +L P I WA +Q Sbjct: 94 TPQEEAVYTNIAFMESVHAKSYSNIFMTLA-----------STPEIDEAFRWARENEHMQ 142 Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 Y + +G + +FV V+ E FY+GF L + K+ A+ Sbjct: 143 YKARKILSEYASGEP-------EKMFVASVMLESFLFYSGFYLPLRMASTGKITNAADII 195 Query: 225 QYIMRDESLH 234 + I+RDE++H Sbjct: 196 RLIIRDEAIH 205 >gi|294661479|ref|YP_003579932.1| NrdB ribonucleotide reductase B subunit [Klebsiella phage KP15] gi|292660640|gb|ADE34888.1| NrdB ribonucleotide reductase B subunit [Klebsiella phage KP15] Length = 402 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 70/310 (22%), Positives = 120/310 (38%), Gaps = 46/310 (14%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L + E+++ NL + +++ LA S+ Sbjct: 60 WRPEEVDLSTDRMQYAK---LPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSM 116 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ AF E +HS ++ +I +L +D F+ +I ++ +Y TL Sbjct: 117 ETWIETWAFSETIHSRSYTHIQRNLHIDPSVQFDQILRNEAIMKRSASMTRYYDTLIDEC 176 Query: 174 FTTGTKDADQEFLQ-----DLFVFYV-----------------------VFEGMWFYTGF 205 T QE + D V Y E + FY F Sbjct: 177 HKLKTIMMLQEQVSGYKPNDPAVVYYNEQYAKQATKCKEALYLCMHAVNALEAIRFYVSF 236 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWTKEFQQKSRT 263 + + KM G A+ + I RDE+LH I Q+ ++P E + SR Sbjct: 237 SFTFNFAEQGKMEGNAKIMRLIARDEALHQKGTQSKIRLWQMGKDDP-----EMVEISRR 291 Query: 264 MLHEATLL-------EIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + EAT + E +A G V G++ S Y++ + ++R +GL+ F Sbjct: 292 LKKEATAIFLEVYEQEKEWAEHLFSVGDVEGVSLKSTIAYIEHLTDQRMRAVGLDSPFTP 351 Query: 316 TENPFPWMSE 325 NP+PWM++ Sbjct: 352 IPNPYPWMNK 361 >gi|227891214|ref|ZP_04009019.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus salivarius ATCC 11741] gi|227867088|gb|EEJ74509.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus salivarius ATCC 11741] Length = 326 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 123/291 (42%), Gaps = 42/291 (14%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL+ W+ N +D++ ++ + G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLSDWREFN---EDDKDIVGKVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 ++ + + + F E+VH+ ++ I ++L N +E+ I + Sbjct: 75 SSLKKDVRTQHEEAVMNNIEFMESVHAKSYSSIFSTL--------NTPKEIEEIFDWTNS 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + G+ LQ V V E FY+GF L NK+ Sbjct: 127 NEILQYKANRINEIYQNGSP------LQKK-VASVFLETFLFYSGFYTPLYWLGHNKLAN 179 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 +AE + I+RDES+H G + ++ + E EF +L+E E Sbjct: 180 VAEIIKLILRDESVHGTYIGYKFQLGFNELSDDEQE-------EFTSWMYDLLYELYENE 232 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFP 321 Y H K VG ++++ AN+ +G++PLF Y +N P Sbjct: 233 EKYTHLLYDK--VGW-TDDVLVFLRYNANKALMNLGMDPLFADGYAQNVNP 280 >gi|184154755|ref|YP_001843095.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus fermentum IFO 3956] gi|260663216|ref|ZP_05864108.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|183226099|dbj|BAG26615.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum IFO 3956] gi|260552408|gb|EEX25459.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|299782855|gb|ADJ40853.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum CECT 5716] Length = 333 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 80/324 (24%), Positives = 135/324 (41%), Gaps = 34/324 (10%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 NQ+ + WEK W+ T +P+ +DL W+ L DD + + G Sbjct: 12 NQVSDMIDKATWEK---LTEQFWLDTRIPVSNDLDDWRE---LDDDHKWTVGHVFGGLTL 65 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 ++L + + A+ + + P L F E+VH+ ++ I ++L N E Sbjct: 66 LDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTL--------NTPDE 117 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTK--DADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 + I + W+ + L S + G DA ++ L+ V V E FY+GF L Sbjct: 118 IDEIFS---WS-DSEEYLQSKAVKIGNLYLDAQEDPLKKK-VANVFLETFLFYSGFYTPL 172 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM---LH 266 NK+ +AE + I+RDES+H G + + ++ L K+ Q R M L+ Sbjct: 173 YYLGHNKLNNVAEIIKLILRDESVH---GTYIGYKFQVGMNQLTEKQQQDMKRWMYDFLY 229 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323 E E Y H + +G ++++ AN+ +G +PLF T NP M Sbjct: 230 ELYDNEEKYTHVLYDQ--IGW-TDDVLVFIRYNANKALMNLGQDPLFPDTASDVNPVV-M 285 Query: 324 SEVIDLKKEKNFFETRVTEYQQGA 347 + + +FF Y+ GA Sbjct: 286 NGISTTTSNHDFFSQVGNGYRLGA 309 >gi|293193572|ref|ZP_06609842.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces odontolyticus F0309] gi|292819928|gb|EFF78930.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces odontolyticus F0309] Length = 320 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 61/266 (22%), Positives = 114/266 (42%), Gaps = 23/266 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +DL WK+ LT DE+LM R ++L +++ Sbjct: 28 TGNFWLPEKIPLSNDLPSWKT---LTKDEQLMTNRVFTGLTLLDTLQGTVGAVSLIPDAR 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P AF E+VH+ ++ I ++L L E+ +R + N ALQ + Sbjct: 85 TPHEEAVYTNIAFMESVHAKSYSSIFSTL-LSTEEINESFR-----WSNENEALQKKAEI 138 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 S+ G ++ V + E FY+GF + K+ A+ + I+R Sbjct: 139 VK-SYYDGNDPEKRK------VASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLIIR 191 Query: 230 DESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287 DE++H + I Q+ + E+ + + + ++L+E E Y + P G Sbjct: 192 DEAVH-GYYIGYKYQLAVNESSQERQDDLRDYTYSLLYELYENEEQYTEDLYDPLGLT-- 248 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313 ++++++ AN+ +G E LF Sbjct: 249 --EDVKKFLRYNANKALMNLGYEALF 272 >gi|90962208|ref|YP_536124.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus salivarius UCC118] gi|301300452|ref|ZP_07206652.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821402|gb|ABE00041.1| Ribonucleoside-diphosphate reductase beta chain [Lactobacillus salivarius UCC118] gi|300214875|gb|ADJ79291.1| Ribonucleoside-diphosphate reductase beta chain [Lactobacillus salivarius CECT 5713] gi|300851949|gb|EFK79633.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 326 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 68/291 (23%), Positives = 123/291 (42%), Gaps = 42/291 (14%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL+ W+ N +D++ ++ + G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLSDWREFN---EDDKDVVGKVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 ++ + + + F E+VH+ ++ I ++L N +E+ I + Sbjct: 75 SSLKKDVRTQHEEAVMNNIEFMESVHAKSYSSIFSTL--------NTPKEIEEIFDWTNS 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + G+ LQ V V E FY+GF L NK+ Sbjct: 127 NEILQYKANRINEIYQNGSP------LQKK-VASVFLETFLFYSGFYTPLYWLGHNKLAN 179 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 +AE + I+RDES+H G + ++ + E EF +L+E E Sbjct: 180 VAEIIKLILRDESVHGTYIGYKFQLGFNELSDDEQE-------EFTSWMYDLLYELYENE 232 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFP 321 Y H K VG ++++ AN+ +G++PLF Y +N P Sbjct: 233 EKYTHLLYDK--VGW-TDDVLVFLRYNANKALMNLGMDPLFADGYAQNVNP 280 >gi|108798796|ref|YP_638993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. MCS] gi|119867913|ref|YP_937865.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. KMS] gi|126434397|ref|YP_001070088.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. JLS] gi|108769215|gb|ABG07937.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. MCS] gi|119694002|gb|ABL91075.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. KMS] gi|126234197|gb|ABN97597.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. JLS] Length = 320 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 69/322 (21%), Positives = 132/322 (40%), Gaps = 33/322 (10%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +D+ W N LT E+ + R Sbjct: 13 NRLQDDKDAEVWDRL---TGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTL 66 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P AF E+VH+ ++ I ++L E+ + +R Sbjct: 67 LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 125 Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 E P++ KA +QY + D+ + V + E FY+GF Sbjct: 126 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 170 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + G + +++P E + + +L E Sbjct: 171 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALQDPAT-QAELKDYTYELLFE 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + VGL ++++++ AN+ +G E LF E NP + Sbjct: 230 LYDNEVEYTQDLYDS--VGLTE-DVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + + +FF + Y G Sbjct: 287 LSPNADENHDFFSGSGSSYVIG 308 >gi|322412098|gb|EFY03006.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 319 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 70/280 (25%), Positives = 125/280 (44%), Gaps = 28/280 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+D E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDLEKDLVGKVFGGLTLLDTMQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 EAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G DA Q+ + ++ E FY+GF L NK+ Sbjct: 127 NKFLQKKAQIINEIYEHG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I Q+ E P + F++ +L++ E Y + Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEAEQETFREWMYDLLYQLYENEEDYT-K 237 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 T+ G VG ++++ AN+ +G +PLF T N Sbjct: 238 TLYDG-VGW-TEEVMTFLRYNANKALMNLGQDPLFPDTAN 275 >gi|46519447|gb|AAT00095.1| JM118 [Macaca fuscata rhadinovirus] Length = 314 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 70/308 (22%), Positives = 120/308 (38%), Gaps = 53/308 (17%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN-------LGFFASSESLVANNIVLAI 104 N W P+++ + +D +D+ RL+ + F +ESLV NI + Sbjct: 36 NRWFPSQISLHED----------SDEVRLLSPTDREFYQFLFTFLGMAESLVNFNIE-DL 84 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREV---PSITAKAN 160 + SN + Y Q E +H + I+ G + G+L +++ ++ K + Sbjct: 85 VKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDLMTYAKKIVEDATLAKKID 144 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 W + T A++ L ++V EG++F + F I M G+ Sbjct: 145 WLHSRVRK--------ATTRAEKVLL------FLVIEGIYFISSFYSIGLFRLRGVMRGV 190 Query: 221 AEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 YI RDE LH + N + + E+P + + EA +E + Sbjct: 191 CLANDYISRDELLHTRAAGLLYNTMISRDESPSV------AYIHGLFREAVEIETLFI-R 243 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNF 335 + +G +N EQ++Q A+R I + PLF P + S K NF Sbjct: 244 SKSRGVTMVNVGDIEQFLQATADRILKSINVPPLFGARPPNACPLSYTS-----AKSVNF 298 Query: 336 FETRVTEY 343 FE +EY Sbjct: 299 FERDNSEY 306 >gi|126650012|ref|ZP_01722245.1| ribonucleotide-diphosphate [Bacillus sp. B14905] gi|126593184|gb|EAZ87146.1| ribonucleotide-diphosphate [Bacillus sp. B14905] Length = 322 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 114/279 (40%), Gaps = 40/279 (14%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D+ WKS D + L + ++ + N V A L E Sbjct: 31 WFPEEIAVSKDIKQWKSFEH--QDTYKKVFAGLTLLDTVQTNIGMNRVAAYTDDLQ--EK 86 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + AFE A+H+ ++ YI T+L +E ELF ++ + KAN Sbjct: 87 AVLTVFDAFE-AIHAKSYSYIFTTLCTNEEIDELFEWVKKNEYLQYKAN---------KI 136 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 ++ D E L V+ E FY+GF L LG + AE I+RDE Sbjct: 137 ADIYNSIEEGDSESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAEIISLILRDE 196 Query: 232 SLHLNFGIDV----------INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 S+H G+ V ++ K E+ LW E +L + E+ Y + Sbjct: 197 SIH---GVAVGFFAQNLYKQFSKEKQESLQLWGYE-------LLLDLYQNEMKYTEDIYA 246 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319 + GL +P + Y+++ AN+ +G E +F E NP Sbjct: 247 E--TGL-SPEVKAYVRYNANKALMNVGFEAMFPEEEVNP 282 >gi|238695114|ref|YP_002922308.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE] gi|220029250|gb|ACL78185.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE] Length = 388 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 67/317 (21%), Positives = 125/317 (39%), Gaps = 43/317 (13%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + + D E+ NL + +S+ A +S+P Sbjct: 49 WRPEEISLATDRIQYLN---MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-----------WA 162 +L F E +HS ++ +I+ + +D F+ + P+I +A W Sbjct: 106 DTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMKRAESIGKYYDDVLYWI 165 Query: 163 LQYTQTLSSPSF------TTGTKDADQEFLQD-----LFVFYV------VFEGMWFYTGF 205 +Y + T DA + F +D + Y+ E + FY F Sbjct: 166 RKYENAKEDLRYWEERDDQTALDDA-RRFFEDTKRDLMASIYLCAHCVNALEAIRFYVSF 224 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A S + G A+ ++I RDE LHL +I Q + + E++Q + + Sbjct: 225 ACTFSFAERGLLEGNAKIMKFIARDEQLHLKGTQYIIRQWQT---GVDGDEWKQIAEELE 281 Query: 266 HEATLL-------EIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 EAT + E + G + L+ + Y++++A+ R GL+ F Sbjct: 282 GEATKIFLDVVEQEKEWVDHLFAMGAIPNLSPEILKTYVEYLADSRMRAAGLKSPFSVRR 341 Query: 318 NPFPWMSEVIDLKKEKN 334 +P PWM + ++ + +N Sbjct: 342 HPLPWMRKWLNSDEVQN 358 >gi|146318863|ref|YP_001198575.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis 05ZYH33] gi|146321071|ref|YP_001200782.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis 98HAH33] gi|223932819|ref|ZP_03624816.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591] gi|253751944|ref|YP_003025085.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis SC84] gi|253753767|ref|YP_003026908.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis P1/7] gi|253755355|ref|YP_003028495.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis BM407] gi|330833008|ref|YP_004401833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis ST3] gi|145689669|gb|ABP90175.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 05ZYH33] gi|145691877|gb|ABP92382.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 98HAH33] gi|223898528|gb|EEF64892.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591] gi|251816233|emb|CAZ51860.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus suis SC84] gi|251817819|emb|CAZ55572.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus suis BM407] gi|251820013|emb|CAR46187.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus suis P1/7] gi|292558520|gb|ADE31521.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus suis GZ1] gi|319758306|gb|ADV70248.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis JS14] gi|329307231|gb|AEB81647.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis ST3] Length = 319 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 68/277 (24%), Positives = 118/277 (42%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ LT +E+ ++ + G ++L + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LTAEEKDLVGKVFGGLTLLDTLQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I + Sbjct: 75 QALRNDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTL--------NTKSEIEDIFEWTNS 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + TGT + V V E FY+GF L NK+ Sbjct: 127 NEYLQRKAKIINEIYETGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +AE + I+RDES+H G + + ++ L ++E Q K R +++ LL Y +E Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQDKLRDWMYD--LLYQLYENEE 233 Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313 + E+ + F+ AN+ +G +PLF Sbjct: 234 GYTRSLYDAVGWTEEVLTFLRYNANKALMNLGQDPLF 270 >gi|33620698|ref|NP_891801.1| aerobic NDP reductase small subunit [Enterobacteria phage RB49] gi|33438568|gb|AAL15125.2| aerobic NDP reductase small subunit [Enterobacteria phage RB49] Length = 386 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 67/317 (21%), Positives = 125/317 (39%), Gaps = 43/317 (13%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + + D E+ NL + +S+ A +S+P Sbjct: 47 WRPEEISLATDRIQYLN---MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTL 103 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-----------WA 162 +L F E +HS ++ +I+ + +D F+ + P+I +A W Sbjct: 104 DTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMKRAESIGKYYDDVLYWI 163 Query: 163 LQYTQTLSSPSF------TTGTKDADQEFLQD-----LFVFYV------VFEGMWFYTGF 205 +Y + T DA + F +D + Y+ E + FY F Sbjct: 164 RKYENAKEDLRYWEERDDQTALDDA-RRFFEDTKRDLMASIYLCAHCVNALEAIRFYVSF 222 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A S + G A+ ++I RDE LHL +I Q + + E++Q + + Sbjct: 223 ACTFSFAERGLLEGNAKIMKFIARDEQLHLKGTQYIIRQWQT---GVDGDEWKQIAEELE 279 Query: 266 HEATLL-------EIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 EAT + E + G + L+ + Y++++A+ R GL+ F Sbjct: 280 GEATKIFLDVVEQEKEWVDHLFAMGAIPNLSPEILKTYVEYLADSRMRAAGLKSPFSVRR 339 Query: 318 NPFPWMSEVIDLKKEKN 334 +P PWM + ++ + +N Sbjct: 340 HPLPWMRKWLNSDEVQN 356 >gi|9632793|ref|NP_049841.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage T4] gi|1172940|sp|P11156|RIR2_BPT4 RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Protein B2; AltName: Full=Ribonucleotide reductase gi|5354417|gb|AAD42624.1|AF158101_211 NrdB aerobic NDP reductase, small subunit [Enterobacteria phage T4] gi|15342|emb|CAA27757.1| small subunit B2 [Enterobacteria phage T4] gi|299780589|gb|ADJ39951.1| aerobic NDP reductase small subunit [Enterobacteria phage T4T] Length = 388 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 70/307 (22%), Positives = 127/307 (41%), Gaps = 35/307 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L ++ + NL + + +S+ + +S+P Sbjct: 48 WRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ F E +HS ++ +I+ +L D ++F+ Y +V T Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLVKT 164 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDL-----FVFYVV--FEGMWFYTGFAQIL 209 + A + KD +Q +DL +V+ E + FY FA Sbjct: 165 REWENAKDMVEYYKDQGLILADKDVEQRAKRDLMKSLYLCLHVINALEAIRFYVSFACTF 224 Query: 210 SLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQKSRTM 264 + + + M G A+ ++I RDE LHL +I Q++ + W K E +Q++ + Sbjct: 225 NFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQEAVDI 284 Query: 265 LHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFP 321 E E +A G V GLN S ++ ++ R Q GL P+ ++P+P Sbjct: 285 FMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYP 344 Query: 322 WMSEVID 328 W+ E ++ Sbjct: 345 WIREYLN 351 >gi|148700272|gb|EDL32219.1| mCG1034315 [Mus musculus] Length = 213 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 6/150 (4%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E V +++ +L S + P++Y W Y A + W EV + +L W N Sbjct: 67 ENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQARASFWTGEEVDLSKNLPHW---NK 123 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE + Q E VHS + Sbjct: 124 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPETHCFYGFQILIENVHSEMYSL 183 Query: 134 IITSLGLDEGE---LFNMYREVPSITAKAN 160 +I + D + LFN +P + KA+ Sbjct: 184 LIDTYIRDPKKREFLFNAIETMPYVKKKAD 213 >gi|325977861|ref|YP_004287577.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177789|emb|CBZ47833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 320 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 125/281 (44%), Gaps = 30/281 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + + V Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSESGV 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N E+ +I + Sbjct: 76 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEAIFEWTNS 127 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G DA Q+ + F+ E FY+GF L NK+ Sbjct: 128 NDCLQKKAKIINDIYENG--DALQKKVASTFL-----ETFLFYSGFFTPLYYLGNNKLAN 180 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +AE + I+RDES+H G + + ++ L ++E Q R +++ L ++ E Sbjct: 181 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQDNFREWMYDL-LYQLYENEEN 235 Query: 280 MPKG-FVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 K + G+ ++++ AN+ +G +PLF T N Sbjct: 236 YTKSLYDGVGWTDEVLTFLRYNANKALMNLGQDPLFPDTAN 276 >gi|302023955|ref|ZP_07249166.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis 05HAS68] Length = 320 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/277 (24%), Positives = 118/277 (42%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ LT +E+ ++ + G ++L + V Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LTAEEKDLVGKVFGGLTLLDTLQSETGV 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I + Sbjct: 76 QALRNDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTL--------NTKSEIEDIFEWTNS 127 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + TGT + V V E FY+GF L NK+ Sbjct: 128 NEYLQRKAKIINEIYETGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 180 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +AE + I+RDES+H G + + ++ L ++E Q K R +++ LL Y +E Sbjct: 181 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQDKLRDWMYD--LLYQLYENEE 234 Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313 + E+ + F+ AN+ +G +PLF Sbjct: 235 GYTRSLYDAVGWTEEVLTFLRYNANKALMNLGQDPLF 271 >gi|55821276|ref|YP_139718.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus thermophilus LMG 18311] gi|55823189|ref|YP_141630.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus thermophilus CNRZ1066] gi|116628014|ref|YP_820633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus thermophilus LMD-9] gi|55737261|gb|AAV60903.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus thermophilus LMG 18311] gi|55739174|gb|AAV62815.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus thermophilus CNRZ1066] gi|116101291|gb|ABJ66437.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Streptococcus thermophilus LMD-9] gi|312278606|gb|ADQ63263.1| Ribonucleoside-diphosphate reductase class Ib beta subunit [Streptococcus thermophilus ND03] Length = 320 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 123/282 (43%), Gaps = 32/282 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSQTGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N E+ I + Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNS 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT A Q+ + ++ E FY+GF L NK+ Sbjct: 127 NKYLQTKAKIINDIYENGT--ALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +AE + I+RDES+H G + + ++ L KE Q+ R +++ LL Y +E Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPEKE-QESFREWMYD--LLYQLYENEE 233 Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYTEN 318 + + E+ M F+ AN+ +G +PLF + N Sbjct: 234 LYTKSLYDGVGWTEEVMTFLRYNANKALMNLGQDPLFPDSAN 275 >gi|269123322|ref|YP_003305899.1| Ribonucleoside-diphosphate reductase [Streptobacillus moniliformis DSM 12112] gi|268314648|gb|ACZ01022.1| Ribonucleoside-diphosphate reductase [Streptobacillus moniliformis DSM 12112] Length = 333 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 69/298 (23%), Positives = 135/298 (45%), Gaps = 15/298 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE D+ W S L+ + R K+ LG ++L ++ + I H+ + +C Sbjct: 31 WIDTEYIPSKDIDSWHS---LSPEMRETYKKVLGGLTLLDTLQSHTGMPKIIDHIESLQC 87 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 R L E++H+ ++ I T++ E E+F ++ + KAN +Y Q L++ Sbjct: 88 RSVLSYMCMMESIHAKSYSTIFTTVASTEEINEIFRWVQDNQYLQFKANKIDEYYQCLNN 147 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P+ T +E L V V E FY+GF L L +MV ++ + I+ DE Sbjct: 148 PNATP------REIYMAL-VASVFLESYLFYSGFFLPLWLSGHGQMVASSDIIKKIIADE 200 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H F + +I E + + +++ + +E E+ + E VGL + Sbjct: 201 SIHGVFVGKLAQEIFEEMSFVEKESVKKEIMNLFYELYENELKFTDEIYSD--VGLTS-E 257 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 ++Y+++ N+ +G + F+ E ++ + + +FF + T Y++ E+ Sbjct: 258 VKEYIRYNGNKALMNLGFKEEFEIKEVNAIVLNGLNVETTQHDFFSKKSTNYEKTLEV 315 >gi|12642668|gb|AAK00340.1| ribonucleotide reductase small subunit [Bovine herpesvirus 2] Length = 313 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 97/236 (41%), Gaps = 25/236 (10%) Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--REV--PSITAKANWALQYTQTLS 170 Y + Q E VHS + I L ++ +Y R V P+I AK +W + Sbjct: 88 HYYVEQECIEVVHSRVYSIIQMVLFKNDDAARRIYVARTVGHPAIHAKVDWLEARVRDCP 147 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 S + + F+ ++ EG++F FA I L +N + + I RD Sbjct: 148 S--------------VPEKFILMILIEGIFFAASFAAIAFLRTSNLLKVTCQSNDLISRD 193 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN-- 288 E++H + N +P K + R + EA +EIA+ MP+ L+ Sbjct: 194 EAVHTTASCCIYNNYIGAHP----KPPPTRVRQLFLEAVDIEIAFIRAKMPRDGQVLSES 249 Query: 289 -APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 S E Y++F A+R IG +PLF + ++ K NFFE R T Y Sbjct: 250 AVASIENYVRFSADRLLCLIGDQPLFNAPPPDANFPLRLMSTDKHTNFFECRSTAY 305 >gi|254819781|ref|ZP_05224782.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium intracellulare ATCC 13950] Length = 322 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 79/354 (22%), Positives = 137/354 (38%), Gaps = 56/354 (15%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +VD R +N N+L K W++ N W+P +VP+ +D A W++ Sbjct: 5 SVDRMRAVN----WNRLPDPKDAQVWDRL---TGNFWLPEKVPLSNDSASWQTLTAQEQQ 57 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 + + L ++++ V +++ P L AF E+VH+ ++ I ++ Sbjct: 58 TTVRVFTGLTLLDTTQATVG---AVSMIADAVTPHEEAVLTNIAFMESVHAKSYSSIFST 114 Query: 138 LGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 L + F+ P + KA + Y + + + V+ Sbjct: 115 LCSTRQIDDAFDWSERNPHLQRKAQIVVDYYRGDDALKRKAAS---------------VM 159 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 E FY+GF + K+ A+ + I+RDE++H F I Q + Sbjct: 160 LESFLFYSGFYLPMYWSSRGKLTNTADIIRLIIRDEAVH-GFYIGYKCQRGL-------A 211 Query: 256 EFQQKSRTMLHEAT--LL------EIAYAHETMPKGFVGLN-APSCEQYMQFIANRRCHQ 306 E + R+ E T LL EI YAH+ + GL YM+F ANR Sbjct: 212 ELSEPERSGHREYTYELLNALYTNEIDYAHDL----YDGLGWTDDVLPYMRFNANRALAN 267 Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 +G EP+F ++ NP + + +FF + Y G+ + WD Sbjct: 268 LGYEPMFGPSDCRVNPAVLSALDPGAGENHDFFSGSGSSYVIGSHQATEDADWD 321 >gi|304373620|ref|YP_003858365.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB16] gi|299829576|gb|ADJ55369.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB16] Length = 391 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/305 (20%), Positives = 120/305 (39%), Gaps = 36/305 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + + E+++ NL + +++ LA S+ Sbjct: 49 WRPEEIDLSIDRMQYAK---MPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSM 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169 ++ AF E +HS ++ +I +L +D + F+ +I ++ +Y L Sbjct: 106 ETWIETWAFSETIHSRSYTHIQRNLHIDPSKEFDKILRNEAIMKRSASMTKYYDDLIAEC 165 Query: 170 ------------------SSPSFTTGTKDADQEFLQDLFVFYV------VFEGMWFYTGF 205 S K ++ + Y+ E + FY F Sbjct: 166 HELKNIVLKIEMLTSHGYPDESIAEYEKKRKEQMRKCKIALYLCMHAVNALEAIRFYVSF 225 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWTKEFQ--QKS 261 + KM G A+ + I RDE+LH I Q+ ++P + FQ +++ Sbjct: 226 TFTFNFAEQGKMEGNAKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMAEIAFQYEEEA 285 Query: 262 RTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + E E +A G V G++ S Y++ + ++R +GL+ FK + NP+ Sbjct: 286 TQIFLEVYEQEKEWAEHLFSIGDVDGVSLKSTIAYIEHLTDQRMRAVGLQSPFKPSPNPY 345 Query: 321 PWMSE 325 PWM++ Sbjct: 346 PWMNK 350 >gi|154508355|ref|ZP_02043997.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC 17982] gi|153797989|gb|EDN80409.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC 17982] Length = 425 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/302 (22%), Positives = 125/302 (41%), Gaps = 26/302 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +DL WK+ LT DE+LM R ++L +++ Sbjct: 133 TGNFWLPEKIPLSNDLPSWKT---LTKDEQLMTNRVFTGLTLLDTLQGTVGAVSLIPDAR 189 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P AF E+VH+ ++ I ++L L E+ +R + N ALQ + Sbjct: 190 TPHEEAVYTNIAFMESVHAKSYSSIFSTL-LSTEEINESFR-----WSNENEALQKKAEI 243 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 S+ G ++ V + E FY+GF + K+ A+ + I+R Sbjct: 244 VK-SYYDGNDPEKRK------VASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLIIR 296 Query: 230 DESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287 DE++H + I Q+ + E+ + + + ++L+E E Y + P G Sbjct: 297 DEAVH-GYYIGYKYQLAVNESSQERQDDLRDYTYSLLYELYENEEQYTEDLYDPLGLT-- 353 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344 ++++++ AN+ +G E LF NP + + + +FF + Y Sbjct: 354 --EDVKKFLRYNANKALMNLGYEALFPADATDVNPAILAALSPNADENHDFFSGSGSSYV 411 Query: 345 QG 346 G Sbjct: 412 MG 413 >gi|222153355|ref|YP_002562532.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus uberis 0140J] gi|222114168|emb|CAR42683.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus uberis 0140J] Length = 319 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 66/289 (22%), Positives = 120/289 (41%), Gaps = 46/289 (15%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G DA Q+ + ++ E FY+GF L NK+ Sbjct: 127 NEFLQKKAKIINDIYANG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270 +AE + I+RDES+H G + +++ K E+ W + +Q + TL Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDKQESFREWMYDLLYQLYENEEEYTKTL 239 Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + + + E M ++++ AN+ +G +PLF T N Sbjct: 240 YDPVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275 >gi|163842202|ref|YP_001626607.1| ribonucleotide-diphosphate reductase subunit beta [Renibacterium salmoninarum ATCC 33209] gi|162955678|gb|ABY25193.1| ribonucleoside-diphosphate reductase beta chain [Renibacterium salmoninarum ATCC 33209] Length = 325 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 37/276 (13%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W + LT DE+ + R ++L +++ Sbjct: 33 VNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVFTGLTLLDTLQGTVGAVSLIPDAI 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L + E F E ++ KA + Y Sbjct: 90 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSVENENLQKKAQIVMNY-- 147 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 TG ++ V + E FY+GF + K+ A+ + I Sbjct: 148 -------YTGDDPLKRK------VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 194 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G++ +++ + E E + + +L+E EI Y H+ Sbjct: 195 IRDEAVHGYYIGYKFQKGLEKVSEERRE-------EIKAYTFDLLYELYENEIQYTHDLY 247 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 VGL A ++++ + AN+ +G E +F T Sbjct: 248 DA--VGL-AEDVKKFLHYNANKALMNLGYEAMFPST 280 >gi|157311531|ref|YP_001469574.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage Phi1] gi|149380735|gb|ABR24740.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage Phi1] Length = 386 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/317 (21%), Positives = 124/317 (39%), Gaps = 43/317 (13%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + + D E+ NL + +S+ A +S+P Sbjct: 47 WRPEEISLATDRIQYLN---MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTL 103 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN-----------WA 162 +L F E +HS ++ +I+ + +D F+ + P+I +A W Sbjct: 104 DTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMKRAESIGQYYDDVLYWI 163 Query: 163 LQYTQTLSSPSF------TTGTKDADQEFLQD-----LFVFYV------VFEGMWFYTGF 205 +Y + T DA + F +D + Y+ E + FY F Sbjct: 164 RKYENAKEDLRYWEERDDHTALDDA-RRFFEDTKRDLMASIYLCAHCVNALEAIRFYVSF 222 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A S + G A+ ++I RDE LHL +I Q + E++Q + + Sbjct: 223 ACTFSFAERGLLEGNAKIMKFIARDEQLHLKGTQYIIRQWQTGAD---GDEWKQIAEELE 279 Query: 266 HEATLL-------EIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 EAT + E + G + L+ + Y++++A+ R GL+ F Sbjct: 280 GEATKIFLDVVEQEKEWVDHLFAMGAIPNLSPEILKTYVEYLADSRMRAAGLKSPFSVRR 339 Query: 318 NPFPWMSEVIDLKKEKN 334 +P PWM + ++ + +N Sbjct: 340 HPLPWMRKWLNSDEVQN 356 >gi|332523715|ref|ZP_08399967.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus porcinus str. Jelinkova 176] gi|332314979|gb|EGJ27964.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus porcinus str. Jelinkova 176] Length = 319 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/282 (24%), Positives = 123/282 (43%), Gaps = 32/282 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+D E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 EAIRADIRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEDIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G +A Q+ + ++ E FY+GF L NK+ Sbjct: 127 NEFLQKKAKIINDIYANG--NALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +AE + I+RDES+H G + + ++ L ++E Q+ R +++ LL Y +E Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQESFREWMYD--LLYQLYENEE 233 Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYTEN 318 + ++ M F+ AN+ +G +PLF T N Sbjct: 234 SYTKTLYDQVGWTDEVMTFLRYNANKALMNLGQDPLFPDTAN 275 >gi|120403054|ref|YP_952883.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium vanbaalenii PYR-1] gi|119955872|gb|ABM12877.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium vanbaalenii PYR-1] Length = 324 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 70/322 (21%), Positives = 133/322 (41%), Gaps = 33/322 (10%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K WE+ N W+P +VP+ +D+ W N LT E+ + R Sbjct: 17 NRLQDDKDAEVWERL---TGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTL 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P AF E+VH+ ++ I ++L E+ + +R Sbjct: 71 LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 129 Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 E P++ KA +QY + D+ + V + E FY+GF Sbjct: 130 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 174 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + G + +E+ +E + + +L E Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALESEAT-RQELKDYTYELLFE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + VGL ++++++ AN+ +G E LF E NP + Sbjct: 234 LYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + + +FF + Y G Sbjct: 291 LSPNADENHDFFSGSGSSYVIG 312 >gi|296171158|ref|ZP_06852606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894294|gb|EFG74049.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 324 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 69/328 (21%), Positives = 134/328 (40%), Gaps = 45/328 (13%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +DL W + LT E+ + R Sbjct: 17 NRLQDEKDAEVWDRL---TGNFWLPEKVPVSNDLPSWAT---LTSGEKQLTMRVFTGLTL 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P AF E+VH+ ++ I ++L E+ + +R Sbjct: 71 LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 129 Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 E P++ KA +QY + D+ + V + E FY+GF Sbjct: 130 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 174 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKS 261 + K+ A+ + I+RDE++H + G+ ++++ K E + + Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDEAK-------RAELKDYT 227 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318 +L E E+ Y + + VGL ++++++ AN+ +G E LF E N Sbjct: 228 YELLFELYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVN 284 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346 P + + + +FF + Y G Sbjct: 285 PAILSALSPNADENHDFFSGSGSSYVIG 312 >gi|288904913|ref|YP_003430135.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus gallolyticus UCN34] gi|306830970|ref|ZP_07464132.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288731639|emb|CBI13196.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus gallolyticus UCN34] gi|304426993|gb|EFM30103.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 320 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 125/281 (44%), Gaps = 30/281 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + + V Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSESGV 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N E+ +I + Sbjct: 76 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEAIFEWTNS 127 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G DA Q+ + F+ E FY+GF L NK+ Sbjct: 128 NDYLQKKAKIINDIYENG--DALQKKVASTFL-----ETFLFYSGFFTPLYYLGNNKLAN 180 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +AE + I+RDES+H G + + ++ L ++E Q R +++ L ++ E Sbjct: 181 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQDNFREWMYDL-LYQLYENEEN 235 Query: 280 MPKG-FVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 K + G+ ++++ AN+ +G +PLF T N Sbjct: 236 YTKSLYDGVGWTDEVLTFLRYNANKALMNLGQDPLFPDTAN 276 >gi|116670901|ref|YP_831834.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter sp. FB24] gi|116611010|gb|ABK03734.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Arthrobacter sp. FB24] Length = 324 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/273 (21%), Positives = 113/273 (41%), Gaps = 37/273 (13%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W + LT DE+ + R +++ +++ Sbjct: 32 VNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L + E F E ++ KA + Y Q Sbjct: 89 TPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWSTENANLQKKAQIVMDYYQ 148 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 149 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 193 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G++ +++ K +E + + +L E E+ Y H+ Sbjct: 194 IRDEAVHGYYIGYKFQKGLEKVSEEK-------RQEIKDYTFELLFELYENEVQYTHDLY 246 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VGL A ++++ + AN+ +G E +F Sbjct: 247 DS--VGL-AEDVKKFLHYNANKALMNLGYEAMF 276 >gi|228475302|ref|ZP_04060026.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis SK119] gi|228270678|gb|EEK12092.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis SK119] Length = 322 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 126/296 (42%), Gaps = 22/296 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LT+DE+ KR L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170 + E +H+ ++ +I T+L + L + + E P + K++ + L Sbjct: 82 KAVYSFMQMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIISNYHKLW 141 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + DQ + V V E FY+GF L L KM E + I+ D Sbjct: 142 GKEASI----FDQYMAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194 Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 ES+H F G+D ++ E ++ ++ +L E E++Y H M +GL Sbjct: 195 ESIHGVFTGLDA-QSLRNELSENEKQKADKEMYKLLEELYKNEVSYTH--MLYDDIGL-T 250 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343 Y+Q+ N+ +G EP F+ E F P + +D K +FF + Y Sbjct: 251 EDVLNYVQYNGNKALSNLGFEPYFE--EKEFNPIIENALDTSTKNHDFFSVKGDGY 304 >gi|167856024|ref|ZP_02478769.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus parasuis 29755] gi|219871494|ref|YP_002475869.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus parasuis SH0165] gi|167852863|gb|EDS24132.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus parasuis 29755] gi|219691698|gb|ACL32921.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus parasuis SH0165] Length = 325 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 70/323 (21%), Positives = 135/323 (41%), Gaps = 29/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 Q+ P +Y E + +++W+ TE D+ +++ + D ER ++ R + + Sbjct: 11 QIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--NINDHERHVLTRAMLAISQV 68 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 E V +Y + PE A E H + +++ LGL++ +F E+ Sbjct: 69 EVNV-KRFWGELYHYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLND--MFTQITEI 125 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQ-EFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + + + + + KD + +F+ L +F + E + + F ++S Sbjct: 126 EPLMKRIRYMEDFMRE----------KDTGKGQFVLSLVLFSLFVEHISLFGQFIIMMSF 175 Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + N GI+ + ++E +H FGI + + E+ L+T EF ++ +T+ +A Sbjct: 176 NKHKNLFKGISNAVEATSKEEEIHGRFGIALYEILSDEHSELFTPEFFEELKTLSQQAFE 235 Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEP-------LFKYTENPFPW 322 E +G + ++ + E Y+ N +GLEP L K TE W Sbjct: 236 AERGILDWIFEEGDLSFISRKTVENYIMNRYNNSLSILGLEPPYDVDPELLKETE----W 291 Query: 323 MSEVIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 292 FDIEIISTKETDFFNKRSTDYSK 314 >gi|299537049|ref|ZP_07050352.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus fusiformis ZC1] gi|298727290|gb|EFI67862.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus fusiformis ZC1] Length = 322 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 78/306 (25%), Positives = 125/306 (40%), Gaps = 41/306 (13%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D+ WKS D + L + ++ + N V A L E Sbjct: 31 WFPEEIAVSKDIKQWKSFEH--QDTYKKVFAGLTLLDTVQTNIGMNRVAAYTDDLQ--EK 86 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + AFE A+H+ ++ YI T+L +E ELF K N LQY + Sbjct: 87 AVLTVFDAFE-AIHAKSYSYIFTTLCTNEEIDELFEW--------VKKNEFLQYKANKIA 137 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + + ++ + E L V+ E FY+GF L LG + AE I+RDE Sbjct: 138 DIYNS-IEEGNPESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAEIISLILRDE 196 Query: 232 SLHLNFGIDV----------INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 S+H G+ V ++ K E HLW E +L + E+ Y + Sbjct: 197 SIH---GVAVGFFAQNLFKQFSKEKQEELHLWGYE-------LLLDLYQNEMKYTDDIYA 246 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 + GL +P Y+++ AN+ +G E +F E NP M+ + + +FF + Sbjct: 247 E--TGL-SPEVRAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKG 302 Query: 341 TEYQQG 346 Y + Sbjct: 303 ATYAKA 308 >gi|118465359|ref|YP_883075.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium 104] gi|118166646|gb|ABK67543.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium avium 104] Length = 324 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/328 (21%), Positives = 134/328 (40%), Gaps = 45/328 (13%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +DL W + LT E+ M R Sbjct: 17 NRLQDDKDAEVWDRL---TGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGLTL 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P AF E+VH+ ++ I ++L E+ + +R Sbjct: 71 LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 129 Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 E P++ KA +QY + D+ + V + E FY+GF Sbjct: 130 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 174 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKS 261 + K+ A+ + I+RDE++H + G+ +++ K +E + + Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAK-------RQELKDYT 227 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318 +L E E+ Y + + VGL ++++++ AN+ +G E LF E N Sbjct: 228 YELLFELYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVN 284 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346 P + + + +FF + Y G Sbjct: 285 PAILSALSPNADENHDFFSGSGSSYVIG 312 >gi|323127635|gb|ADX24932.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 319 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 125/280 (44%), Gaps = 28/280 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+D E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDIEKDLVGKVFGGLTLLDTMQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 EAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G DA Q+ + ++ E FY+GF L NK+ Sbjct: 127 NEFLQKKAQIINEIYEHG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I Q+ E P + F++ +L++ E Y + Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEAEQETFREWMYDLLYQLYENEEDYT-K 237 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ G VG ++++ AN+ +G +PLF T N Sbjct: 238 SLYDG-VGW-TEEVMTFLRYNANKALMNLGQDPLFPDTAN 275 >gi|314936969|ref|ZP_07844316.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis subsp. hominis C80] gi|313655588|gb|EFS19333.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis subsp. hominis C80] Length = 322 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 126/296 (42%), Gaps = 22/296 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LT+DE+ KR L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170 + E +H+ ++ +I T+L + L + + E P + K++ + L Sbjct: 82 KAVYSFMQMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIISNYHKLW 141 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + DQ + V V E FY+GF L L KM E + I+ D Sbjct: 142 GKEASI----FDQYMAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194 Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 ES+H F G+D ++ E ++ ++ +L E E++Y H M +GL Sbjct: 195 ESIHGVFTGLDA-QSLRNELSENEKQKADKEMYKLLEELYKNEVSYTH--MLYDDIGL-T 250 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343 Y+Q+ N+ +G EP F+ E F P + +D K +FF + Y Sbjct: 251 EDVLNYVQYNGNKALSNLGFEPYFE--EKEFNPIIENALDTSTKNHDFFSVKGDGY 304 >gi|227514022|ref|ZP_03944071.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|227087608|gb|EEI22920.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] Length = 333 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 79/324 (24%), Positives = 135/324 (41%), Gaps = 34/324 (10%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 NQ+ + WEK W+ T +P+ +DL W+ L DD + + G Sbjct: 12 NQVSDMIDKATWEK---LTEQFWLDTRIPVSNDLDDWRE---LDDDHKWTVGHVFGGLTL 65 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 ++L + + A+ + + P L F E+VH+ ++ I ++L N E Sbjct: 66 LDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTL--------NTPDE 117 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTK--DADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 + I + W+ + L + + G DA ++ L+ V V E FY+GF L Sbjct: 118 IDEIFS---WS-DSEEYLQNKAVKIGNLYLDAQEDPLKKK-VANVFLETFLFYSGFYTPL 172 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM---LH 266 NK+ +AE + I+RDES+H G + + ++ L K+ Q R M L+ Sbjct: 173 YYLGHNKLNNVAEIIKLILRDESVH---GTYIGYKFQVGMNQLTEKQQQDMKRWMYDFLY 229 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323 E E Y H + +G ++++ AN+ +G +PLF T NP M Sbjct: 230 ELYDNEEKYTHVLYDQ--IGW-TDDVLVFIRYNANKALMNLGQDPLFPDTASDVNPVV-M 285 Query: 324 SEVIDLKKEKNFFETRVTEYQQGA 347 + + +FF Y+ GA Sbjct: 286 NGISTTTSNHDFFSQVGNGYRLGA 309 >gi|323945045|gb|EGB41110.1| nrdB protein [Escherichia coli H120] gi|333002093|gb|EGK21659.1| ribonucleoside-diphosphate reductase 1 subunit beta domain protein [Shigella flexneri K-218] Length = 178 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL- 252 E + FY FA + M G A+ + I RDE+LHL ++N ++ ++P + Sbjct: 6 LEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMA 65 Query: 253 -WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE 310 +E +Q+ + +A E +A G +GLN QY+++I N R +GL+ Sbjct: 66 EIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD 125 Query: 311 PLFKYTENPFPWMS 324 F+ NP PW++ Sbjct: 126 LPFQTRSNPIPWIN 139 >gi|251782830|ref|YP_002997133.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391460|dbj|BAH81919.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 319 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/280 (24%), Positives = 125/280 (44%), Gaps = 28/280 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+D E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSDIEKDLVGKVFGGLTLLDTMQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 EAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G DA Q+ + ++ E FY+GF L NK+ Sbjct: 127 NEFLQKKAQIINEIYEHG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I Q+ E P + F++ +L++ E Y + Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEAEQETFREWMYDLLYQLYENEENYT-K 237 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ G VG ++++ AN+ +G +PLF T N Sbjct: 238 SLYDG-VGW-TEEVMTFLRYNANKALMNLGQDPLFPDTAN 275 >gi|41409193|ref|NP_962029.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398013|gb|AAS05643.1| NrdG [Mycobacterium avium subsp. paratuberculosis K-10] Length = 324 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/328 (21%), Positives = 134/328 (40%), Gaps = 45/328 (13%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +DL W + LT E+ M R Sbjct: 17 NRLQDDKDAEVWDRL---TGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGLTL 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P AF E+VH+ ++ I ++L E+ + +R Sbjct: 71 LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 129 Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 E P++ KA +QY + D+ + V + E FY+GF Sbjct: 130 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 174 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKS 261 + K+ A+ + I+RDE++H + G+ +++ K +E + + Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAK-------RQELKDYT 227 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318 +L E E+ Y + + VGL ++++++ AN+ +G E LF E N Sbjct: 228 YELLFELYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVN 284 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346 P + + + +FF + Y G Sbjct: 285 PAILSALSPNADENHDFFSGSGSSYVIG 312 >gi|297521777|ref|ZP_06940163.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli OP50] Length = 174 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL- 252 E + FY FA + M G A+ + I RDE+LHL ++N ++ ++P + Sbjct: 2 LEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMA 61 Query: 253 -WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE 310 +E +Q+ + +A E +A G +GLN QY+++I N R +GL+ Sbjct: 62 EIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLD 121 Query: 311 PLFKYTENPFPWMS 324 F+ NP PW++ Sbjct: 122 LPFQTRSNPIPWIN 135 >gi|18466786|ref|NP_569593.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16506102|emb|CAD09988.1| putative ribonucleoside-diphosphate reductase beta subunit [Salmonella enterica subsp. enterica serovar Typhi str. CT18] Length = 380 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/296 (22%), Positives = 125/296 (42%), Gaps = 27/296 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + +K L + ER + NL + +S+ + + +S PE Sbjct: 49 WRPEEVDITTDRIDFNTK--LQEHERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPEL 106 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSITAKANWALQYT 166 ++ +F E +HS ++ +II + D +F+ + SI+++ + + T Sbjct: 107 ETWVETWSFSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIISRAVSISSEYDRLYEMT 166 Query: 167 ---QTLSSPSFT-------TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 Q L F G Q L V E + FY FA + G Sbjct: 167 CARQHLGEDEFERLYISEFDGKPYPLQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKL 226 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA-- 274 + G + ++I RDE+LH +I ++ L K + + +++ T++++A Sbjct: 227 LEGNTKIMRFIARDEALHCEGTERMIRFMRTGREGLMWKMIAAEEESFIYQ-TMMDVAGQ 285 Query: 275 ---YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSE 325 +A G +GLNA + Y+++ N ++GL LF + ++P WM++ Sbjct: 286 EMRWADYLFKDGSMIGLNADILKSYVKYRTNLAMRRLGLRQLFPEIKDDPLVWMNK 341 >gi|315153942|gb|EFT97958.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0031] Length = 321 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 28/280 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L+D E+ + G +++ + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTFLDTVQSESGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 DQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIDDIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + GT + + V E FY+GF L NK+ Sbjct: 127 NKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I Q+ E P + + +L+E E Y E Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEE 238 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 +G + ++++ AN+ +G++PLF T N Sbjct: 239 LYDD--LGW-TEEVKTFLRYNANKALMNLGMDPLFADTAN 275 >gi|75758223|ref|ZP_00738348.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494277|gb|EAO57368.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 342 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/298 (23%), Positives = 126/298 (42%), Gaps = 24/298 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ E+P+ D +W + L D++ + K+ LG ++ + + H+ +P+ Sbjct: 37 WLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLVSLHMEDPQK 93 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + + A E +H+ ++ +I +L +E +F+ E P + KA+ + + L Sbjct: 94 KAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADIITGHYRKLLK 153 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P D D + L V V E FY+GF L L ++ E I+RDE Sbjct: 154 P-------DVDPKELYMAIVASVFLESFLFYSGFFYPLFLAGQGQLTASGEIIALILRDE 206 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET--MPKGFVGLNA 289 ++H G + Q EN L E Q+ + + LLE+ YA+E + L Sbjct: 207 AIHGVTG-GIFAQEIYEN-QLTEAEQQEVDKEAIQ---LLEMLYANELDYTNDVYAPLGK 261 Query: 290 PSCEQYMQFI---ANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEY 343 E+ +F+ AN+ +G + F E P + + K K+ +FF + Y Sbjct: 262 DMIEEVNKFLRYNANKAMMNLGYDQYFD-DEYVNPIVQNGLQTKTKQHDFFSVKGNGY 318 >gi|29375101|ref|NP_814254.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis V583] gi|227519132|ref|ZP_03949181.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis TX0104] gi|227553836|ref|ZP_03983885.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis HH22] gi|229547642|ref|ZP_04436367.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis TX1322] gi|229548395|ref|ZP_04437120.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis ATCC 29200] gi|255971023|ref|ZP_05421609.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1] gi|255973536|ref|ZP_05424122.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2] gi|256617388|ref|ZP_05474234.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC 4200] gi|256761391|ref|ZP_05501971.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3] gi|256852443|ref|ZP_05557819.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis T8] gi|256957628|ref|ZP_05561799.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5] gi|256959663|ref|ZP_05563834.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96] gi|256963238|ref|ZP_05567409.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis HIP11704] gi|257080134|ref|ZP_05574495.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1] gi|257080866|ref|ZP_05575227.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol] gi|257083550|ref|ZP_05577911.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1] gi|257085823|ref|ZP_05580184.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6] gi|257088966|ref|ZP_05583327.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188] gi|257415187|ref|ZP_05592181.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis AR01/DG] gi|257418242|ref|ZP_05595236.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11] gi|257420749|ref|ZP_05597739.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis X98] gi|293384855|ref|ZP_06630698.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis R712] gi|293389145|ref|ZP_06633612.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis S613] gi|294780704|ref|ZP_06746065.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis PC1.1] gi|300861776|ref|ZP_07107856.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TUSoD Ef11] gi|307272281|ref|ZP_07553541.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0855] gi|307275556|ref|ZP_07556697.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX2134] gi|307282794|ref|ZP_07562994.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0860] gi|307288831|ref|ZP_07568809.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0109] gi|307290616|ref|ZP_07570524.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0411] gi|312900212|ref|ZP_07759524.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0470] gi|312904832|ref|ZP_07763972.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0635] gi|312908153|ref|ZP_07767131.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis DAPTO 512] gi|312952106|ref|ZP_07770987.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0102] gi|312979089|ref|ZP_07790804.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis DAPTO 516] gi|29342560|gb|AAO80325.1| ribonucleoside-diphosphate reductase 2, beta subunit [Enterococcus faecalis V583] gi|227073409|gb|EEI11372.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis TX0104] gi|227177089|gb|EEI58061.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis HH22] gi|229306611|gb|EEN72607.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis ATCC 29200] gi|229307134|gb|EEN73121.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis TX1322] gi|255962041|gb|EET94517.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1] gi|255966408|gb|EET97030.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2] gi|256596915|gb|EEU16091.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC 4200] gi|256682642|gb|EEU22337.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3] gi|256712297|gb|EEU27329.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis T8] gi|256948124|gb|EEU64756.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5] gi|256950159|gb|EEU66791.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96] gi|256953734|gb|EEU70366.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis HIP11704] gi|256988164|gb|EEU75466.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1] gi|256988896|gb|EEU76198.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol] gi|256991580|gb|EEU78882.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1] gi|256993853|gb|EEU81155.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6] gi|256997778|gb|EEU84298.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188] gi|257157015|gb|EEU86975.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ARO1/DG] gi|257160070|gb|EEU90030.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11] gi|257162573|gb|EEU92533.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis X98] gi|291077859|gb|EFE15223.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis R712] gi|291081516|gb|EFE18479.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis S613] gi|294452314|gb|EFG20755.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis PC1.1] gi|295114163|emb|CBL32800.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Enterococcus sp. 7L76] gi|300848301|gb|EFK76058.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TUSoD Ef11] gi|306498330|gb|EFM67839.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0411] gi|306500300|gb|EFM69639.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0109] gi|306503650|gb|EFM72881.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0860] gi|306507661|gb|EFM76790.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX2134] gi|306511170|gb|EFM80180.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0855] gi|310625861|gb|EFQ09144.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis DAPTO 512] gi|310629888|gb|EFQ13171.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0102] gi|310631838|gb|EFQ15121.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0635] gi|311288123|gb|EFQ66679.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis DAPTO 516] gi|311292573|gb|EFQ71129.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0470] gi|315026267|gb|EFT38199.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX2137] gi|315028520|gb|EFT40452.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX4000] gi|315032246|gb|EFT44178.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0017] gi|315035532|gb|EFT47464.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0027] gi|315143982|gb|EFT87998.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX2141] gi|315146930|gb|EFT90946.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX4244] gi|315155004|gb|EFT99020.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0043] gi|315158779|gb|EFU02796.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0312] gi|315161036|gb|EFU05053.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0645] gi|315166222|gb|EFU10239.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1302] gi|315167729|gb|EFU11746.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1341] gi|315170811|gb|EFU14828.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1342] gi|315173869|gb|EFU17886.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1346] gi|315574921|gb|EFU87112.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0309B] gi|315576500|gb|EFU88691.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0630] gi|315582368|gb|EFU94559.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0309A] gi|327534208|gb|AEA93042.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis OG1RF] Length = 321 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 28/280 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L+D E+ + G +++ + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 DQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIDDIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + GT + + V E FY+GF L NK+ Sbjct: 127 NKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I Q+ E P + + +L+E E Y E Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEE 238 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 +G + ++++ AN+ +G++PLF T N Sbjct: 239 LYDD--LGW-TEEVKTFLRYNANKALMNLGMDPLFADTAN 275 >gi|262038309|ref|ZP_06011695.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia goodfellowii F0264] gi|261747660|gb|EEY35113.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia goodfellowii F0264] Length = 334 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 109/249 (43%), Gaps = 14/249 (5%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 I H+ + +CR L E +H+ ++ I T++ E FN +E + KAN Sbjct: 78 IIDHIESLQCRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFNWVQENEHLQYKANK 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 Y Q +++P K +E L V E FY+GF L L +MV Sbjct: 138 IDYYYQKMNNP------KATKREIYMALCA-SVYLETYLFYSGFFLPLWLAGQGEMVASC 190 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + + I+ DES+H F + +I + +++ + ++H+ E Y E Sbjct: 191 DIIKKIIADESIHGVFVGLLSQEIYATFSEEEKESVRKELKELMHDLYENEARYTDEVY- 249 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 G VGL A ++Y+++ AN+ +G E F+ + NP ++ + +FF + Sbjct: 250 -GDVGLTA-DVKEYIRYNANKALMNLGFEEEFEVKDVNPIVLNGLNVE-TTQHDFFSKKS 306 Query: 341 TEYQQGAEL 349 T Y++ E+ Sbjct: 307 TNYEKALEV 315 >gi|169827410|ref|YP_001697568.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus sphaericus C3-41] gi|168991898|gb|ACA39438.1| Ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus sphaericus C3-41] Length = 318 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 76/306 (24%), Positives = 123/306 (40%), Gaps = 41/306 (13%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D+ WKS D + L + ++ + N V A L E Sbjct: 27 WFPEEIAVSKDIQQWKSFEH--QDTYKKVFAGLTLLDTVQTNIGMNRVAAYTDDLQ--EK 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + AFE A+H+ ++ YI T+L +E ELF ++ + KAN Sbjct: 83 AVLTVFDAFE-AIHAKSYSYIFTTLCTNEEIDELFEWVKKNEYLQYKAN---------KI 132 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 ++ D E L V+ E FY+GF L LG + AE I+RDE Sbjct: 133 ADIYNSIEEGDAESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAEIISLILRDE 192 Query: 232 SLHLNFGIDV----------INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 S+H G+ V ++ K E LW E +L + E+ Y + Sbjct: 193 SIH---GVAVGFFAQNLYKQFSKEKQEALQLWGYE-------LLLDLYQNEMKYTEDIYA 242 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 + GL +P + Y+++ AN+ +G E +F E NP M+ + + +FF + Sbjct: 243 E--TGL-SPEVKAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKG 298 Query: 341 TEYQQG 346 Y + Sbjct: 299 ATYAKA 304 >gi|228904848|ref|ZP_04068902.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] gi|228854862|gb|EEM99466.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] Length = 343 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 17/227 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ E+P+ D +W + L D++ + K+ LG ++ + + H+ +P+ Sbjct: 38 WLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLVSLHMEDPQK 94 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + + A E +H+ ++ +I +L +E +F+ E P + KA+ + + L Sbjct: 95 KAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADIITGHYRKLLK 154 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P D D + L V V E FY+GF L L ++ E I+RDE Sbjct: 155 P-------DVDPKELYMAIVASVFLESFLFYSGFFYPLFLAGQGQLTASGEIIALILRDE 207 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 ++H G + Q EN L E Q+ + + LLE+ YA+E Sbjct: 208 AIHGVTG-GIFAQEIYEN-QLTEAEQQEVDKEAIQ---LLEMLYANE 249 >gi|90018206|gb|ABD83916.1| ribonucleotide reductase M2 polypeptide [Ictalurus punctatus] Length = 139 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 20/145 (13%) Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 LFN +P + KA+WAL + G KDA +F + + F V EG++F Sbjct: 10 LFNAVETLPCVKKKADWALNWI----------GNKDA--QFGERVVAFAAV-EGIFFSGS 56 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 FA I L + M G+ + I RDE LH +F + HL K + +++ Sbjct: 57 FASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVNKPSEATVKSI 109 Query: 265 LHEATLLEIAYAHETMPKGFVGLNA 289 + A +E + + +P +G+N Sbjct: 110 IVNAVQIEQEFLTQALPVKLIGMNC 134 >gi|169630485|ref|YP_001704134.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium abscessus ATCC 19977] gi|169242452|emb|CAM63480.1| Probable ribonucleoside-diphosphate reductase beta subunit [Mycobacterium abscessus] Length = 324 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/310 (20%), Positives = 129/310 (41%), Gaps = 42/310 (13%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W N LTD E+ + R +++ +++ Sbjct: 32 TGNFWLPEKVPVSNDIQSW---NTLTDHEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166 P AF E+VH+ ++ I ++L E+ + +R E P++ KA ++Y Sbjct: 89 TPHEEAVYTNIAFMESVHAKSYSSIFSTL-CSTREIDDAFRWSEENPNLQRKAEIVMEYY 147 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + D+ + V + E FY+GF + K+ A+ + Sbjct: 148 R-------------GDEPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRL 192 Query: 227 IMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 I+RDE++H + G++ +++ K E ++ + +L+E E Y + Sbjct: 193 IIRDEAVHGYYIGYKFQRGLERVDEAK-------RAEIKEYTYDLLYELYENETDYTEDL 245 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFF 336 + VGL ++++++ AN+ +G E LF E NP + + + +FF Sbjct: 246 YDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPREETDVNPAILSALSPNADENHDFF 302 Query: 337 ETRVTEYQQG 346 + Y G Sbjct: 303 SGSGSSYVIG 312 >gi|225868773|ref|YP_002744721.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. zooepidemicus] gi|225702049|emb|CAW99658.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. zooepidemicus] Length = 319 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/294 (21%), Positives = 123/294 (41%), Gaps = 56/294 (19%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAVEKDLVGKVFGGLTLLDTMQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 EAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEDIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ A Q+ + ++ E FY+GF L NK+ Sbjct: 127 NLFLQNKAKIINDIYENGS--ALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEF--------QQKSRTM 264 +AE + I+RDES+H G + +++ + E+ W + +Q ++T+ Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELSESEQESLRDWMYDLLYQLYENEEQYTKTL 239 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 E+ + E M ++++ AN+ +G +PLF T N Sbjct: 240 YD-----EVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275 >gi|70921511|ref|XP_734071.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56506464|emb|CAH78308.1| hypothetical protein PC000956.02.0 [Plasmodium chabaudi chabaudi] Length = 87 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%) Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFET 338 ++P +G+N+ QY++F+A+R +G +F +++NPF WM ++I L+ + NFFE Sbjct: 5 SLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HSKNPFSWM-DLISLQGKTNFFEK 62 Query: 339 RVTEYQQGA 347 RV +YQ+ Sbjct: 63 RVADYQKSG 71 >gi|330718304|ref|ZP_08312904.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc fallax KCTC 3537] Length = 326 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 118/281 (41%), Gaps = 40/281 (14%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T VP+ +DL W+ + +E+ ++ G + ++L + + + Sbjct: 25 TWEK---LTQQFWLDTRVPISNDLRNWRDTSA---EEKKVLNLVFGGLTTLDTLQSQDGM 78 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + + N + L F E+VH+ ++ I +L D+ E I A W Sbjct: 79 AELKKDAVNQKEEAVLNNIQFMESVHAKSYSSIFETLN-DKAE----------IEAVFEW 127 Query: 162 A-----LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 A LQY + + GT LQ V V E FY+GF L NK Sbjct: 128 ADNDEYLQYKAQRINDIYHNGTP------LQKK-VASVFLETFLFYSGFYTPLYFVGHNK 180 Query: 217 MVGIAEQYQYIMRDESLH---LNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 M+ +AE + I+RDES+H + + + NQ+ + E Q +L E E Sbjct: 181 MLNVAEIIKLIIRDESVHGTYIGYKFQIGFNQLSEDEQ----SELQSWMYDLLFELYENE 236 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + HE + +G S ++++ AN+ +G EP+F Sbjct: 237 EKFTHELYDE--IGW-TDSVMTFLRYNANKALMNLGQEPMF 274 >gi|323479608|gb|ADX79047.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis 62] Length = 321 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 28/280 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L+D E+ + G +++ + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 DQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIDDIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + GT + + V E FY+GF L NK+ Sbjct: 127 NKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I Q+ E P + + +L+E E Y E Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEEHYTEE 238 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 +G + ++++ AN+ +G++PLF T N Sbjct: 239 LYDD--LGW-TEEVKTFLRYNANKALMNLGMDPLFADTAN 275 >gi|319938784|ref|ZP_08013148.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus 1_2_62CV] gi|319811834|gb|EFW08100.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus 1_2_62CV] Length = 319 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/278 (24%), Positives = 118/278 (42%), Gaps = 28/278 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSPEEKDLVGKVFGGLTLLDTMQSQSGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N E+ I Sbjct: 75 EAIRGDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIINEIYLNGNALEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I Q+ E P + F++ +L+ E Y E Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEEEQETFREWMYDLLYTLYENEEGYT-E 237 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 T+ G VG + ++++ AN+ +G +PLF T Sbjct: 238 TLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLFPDT 273 >gi|146329200|ref|YP_001209518.1| ribonucleotide reductase, beta subunit [Dichelobacter nodosus VCS1703A] gi|146232670|gb|ABQ13648.1| ribonucleotide reductase, beta subunit [Dichelobacter nodosus VCS1703A] Length = 325 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 71/318 (22%), Positives = 134/318 (42%), Gaps = 19/318 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 Q+ P +Y E + +++W+ TE D+ +K+ ++D ER + R++ + Sbjct: 11 QIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYKT--AISDAERTALTRSMLAISQI 68 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 E V +Y + E A E H + +++ LG++E LF + Sbjct: 69 EVSV-KRFWGDLYHYFPKAEIDDVGGTFAESEVRHKDAYSFLLEQLGMNE--LFTQITHI 125 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 P++ A+ ++Y + +F +QE + L +F + E + + F ++S Sbjct: 126 PALMAR----IEYME-----AFMRNKDKNNQELVLSLVLFSLFVEHISLFGQFLIMMSFN 176 Query: 213 R-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 + N GI+ + ++E +H FGI + + IK E+P L+T F +T+ +A Sbjct: 177 KYRNLFKGISNAVEATSKEEEIHGRFGIALYHIIKEEHPDLFTDSFYHHLKTLADQALAA 236 Query: 272 EIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVI 327 E + G + L + E Y+ N +G+E + E W I Sbjct: 237 ERGILNWIFENGDLPFLQQKTVENYIVNRYNNSLSVLGIESPYTVDEERLKETQWFDIEI 296 Query: 328 DLKKEKNFFETRVTEYQQ 345 KE +FF R T+Y + Sbjct: 297 LSGKENDFFYKRSTDYSK 314 >gi|32709431|gb|AAP86734.1| NrdB [Enterobacteria phage T2H] Length = 392 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/315 (22%), Positives = 139/315 (44%), Gaps = 47/315 (14%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L ++ + NL + + +S+ + +S+P Sbjct: 48 WRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSI----------- 155 ++ F E +HS ++ +I+ +L D ++F+ + + SI Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMKRAESIGRYYDDVIEKT 164 Query: 156 ----TAKANWALQYTQTLSSPSFTTGTKDA-------DQEFLQDLFV-FYVV--FEGMWF 201 AKA+ ++Y + +++ KDA +E ++ L++ +V+ E + F Sbjct: 165 RYWQNAKAD--IEYKKEINADE--DDIKDAIEHEMYWKRELMRSLYLCLHVINALEAIRF 220 Query: 202 YTGFAQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWT---KE 256 Y FA + + + M G A+ ++I RDE LHL +I Q+++ + W KE Sbjct: 221 YVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAKE 280 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFK 314 +Q++ + E E +A G V GLN S ++ ++ R Q GL P+ Sbjct: 281 CEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITD 340 Query: 315 Y-TENPFPWMSEVID 328 ++P+PW+ E ++ Sbjct: 341 APVKHPYPWIREYLN 355 >gi|254776333|ref|ZP_05217849.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. avium ATCC 25291] Length = 320 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/328 (21%), Positives = 134/328 (40%), Gaps = 45/328 (13%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +DL W + LT E+ M R Sbjct: 13 NRLQDDKDAEVWDRL---TGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTIRVFTGLTL 66 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P AF E+VH+ ++ I ++L E+ + +R Sbjct: 67 LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 125 Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 E P++ KA +QY + D+ + V + E FY+GF Sbjct: 126 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 170 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKS 261 + K+ A+ + I+RDE++H + G+ +++ K +E + + Sbjct: 171 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAK-------RQELKDYT 223 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318 +L E E+ Y + + VGL ++++++ AN+ +G E LF E N Sbjct: 224 YELLFELYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVN 280 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346 P + + + +FF + Y G Sbjct: 281 PAILSALSPNADENHDFFSGSGSSYVIG 308 >gi|242372965|ref|ZP_04818539.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W1] gi|242349291|gb|EES40892.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W1] Length = 322 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 72/296 (24%), Positives = 127/296 (42%), Gaps = 22/296 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ L+D ER K+ L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LSDSERETFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170 + A E +H+ ++ +I T+L + L + + E P + K++ + L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIIDNYHKLW 141 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + DQ + V V E FY+GF L L KM E + I+ D Sbjct: 142 GKEASI----FDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194 Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 ES+H F G+D ++ E ++ Q+ +L+E E++Y H + +GL Sbjct: 195 ESIHGVFTGLDA-QSLRNELSESEKQKADQEMYKLLNELYDNEVSYTH--LLYDDIGL-T 250 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343 Y+++ N+ +G EP F+ E F P + +D K +FF + Y Sbjct: 251 EDVLNYVRYNGNKALSNLGFEPYFE--EREFNPIIENALDTSTKNHDFFSVKGDGY 304 >gi|254820788|ref|ZP_05225789.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium intracellulare ATCC 13950] Length = 324 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 69/328 (21%), Positives = 134/328 (40%), Gaps = 45/328 (13%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +DL W + LT E+ M R Sbjct: 17 NRLQDEKDAEVWDRL---TGNFWLPEKVPVSNDLPSWGT---LTAHEKQMTMRVFTGLTL 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P AF E+VH+ ++ I ++L E+ + +R Sbjct: 71 LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTAEIDDAFRW 129 Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 E P++ KA +QY + D+ + V + E FY+GF Sbjct: 130 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 174 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKS 261 + K+ A+ + I+RDE++H + G+ +++ + +E + + Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDAR-------KQELKDYT 227 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318 +L E E+ Y + + VGL ++++++ AN+ +G E LF E N Sbjct: 228 YELLFELYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVN 284 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346 P + + + +FF + Y G Sbjct: 285 PAILSALSPNADENHDFFSGSGSSYVIG 312 >gi|315605404|ref|ZP_07880447.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 180 str. F0310] gi|315312973|gb|EFU61047.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 180 str. F0310] Length = 329 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 69/302 (22%), Positives = 127/302 (42%), Gaps = 26/302 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL WK+ LT E+LM R ++L +++ Sbjct: 37 TGNFWLPEKVPLSNDLPSWKT---LTKGEQLMTNRVFTGLTLLDTLQGTVGAVSLIPDAR 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P AF E+VH+ ++ I ++L L E+ +R + N ALQ + Sbjct: 94 TPHEEAVYTNIAFMESVHAKSYSSIFSTL-LSTEEINESFR-----WSNENAALQKKAEI 147 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 S+ G DA++ V + E FY+GF + K+ A+ + I+R Sbjct: 148 IK-SYYDG-DDAEKR-----KVASTMLESFLFYSGFYAPMYWSAHAKLTNTADLIRLIIR 200 Query: 230 DESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287 DE++H + I Q+ + E+ + + + ++L+E E Y + P G Sbjct: 201 DEAVH-GYYIGYKYQLAVNESSQERQDDLRDYTYSLLYELYENEEQYTEDLYDPLGLT-- 257 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344 ++++++ AN+ +G E LF + NP + + + +FF + Y Sbjct: 258 --EDVKKFLRYNANKALMNLGYEALFPHDATNVNPAILAALSPNADENHDFFSGSGSSYV 315 Query: 345 QG 346 G Sbjct: 316 MG 317 >gi|149277655|ref|ZP_01883795.1| ribonucleotide-diphosphate [Pedobacter sp. BAL39] gi|149231343|gb|EDM36722.1| ribonucleotide-diphosphate [Pedobacter sp. BAL39] Length = 327 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 77/315 (24%), Positives = 140/315 (44%), Gaps = 26/315 (8%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 G WE+ L W+ TE D+ WKS L+ + + + KR LG ++L ++ Sbjct: 18 GMFWEQNL---RQFWVDTEYIPSKDIDSWKS---LSPEIQQVYKRALGGLTLLDTLQSHT 71 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITA 157 + + H+ + + L EA+H+ ++ I T++ + ELF+ + Sbjct: 72 GMPKLLDHIDGLQNKAVLSFMCMMEAIHAKSYSTIFTTVNSTPEINELFDWVENNKLLQF 131 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA+ +Y + L P + E L V+ E FY+GF L L +M Sbjct: 132 KASTIDKYYRALDVPKVSN-------EVLFMGLAASVLLESFLFYSGFFMPLWLAGQGQM 184 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQ---IKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 V A+ + I+ DES+H F + ++ Q K+ NP ++ + K +L E E+ Sbjct: 185 VASADIIKKIVADESIHGVF-VGLLAQDVYKKLPNP----EKCKAKLEALLMELYENELK 239 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 Y E + VGL A ++Y+++ AN+ +G E LF+ ++ + + + Sbjct: 240 YTDELYTE--VGLTA-EVKEYVRYNANKAMMNLGFEELFEVKPINAIVLNGLNVETTQHD 296 Query: 335 FFETRVTEYQQGAEL 349 FF + T Y++ E+ Sbjct: 297 FFSKKSTNYEKSMEV 311 >gi|322372696|ref|ZP_08047232.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C150] gi|321277738|gb|EFX54807.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C150] Length = 319 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 68/285 (23%), Positives = 120/285 (42%), Gaps = 38/285 (13%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSQTGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N E+ I + Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEDIFEWTNS 126 Query: 160 NWALQYTQTLSSPSFTTGT---KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 N LQ + + + GT K FL+ FY+GF L NK Sbjct: 127 NEYLQTKAKIINDIYENGTPLQKKVASTFLETFL----------FYSGFFTPLYYLGNNK 176 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 + +AE + I+RDES+H G + + ++ L +E Q+ R +++ LL Y Sbjct: 177 LANVAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQESFREWMYD--LLYELYE 230 Query: 277 HETMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYTEN 318 +E + + E+ M F+ AN+ +G +PLF + N Sbjct: 231 NEELYTKSLYDGVGWTEEVMTFLRYNANKALMNLGQDPLFPDSAN 275 >gi|46143780|ref|ZP_00134247.2| COG0208: Ribonucleotide reductase, beta subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 336 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/277 (24%), Positives = 117/277 (42%), Gaps = 24/277 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D ++S L + E+ + NL + +S+ + +A +S PE Sbjct: 49 WRPEEVDVSQDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 ++ F E +HS ++ +II ++ D +F+ I +A Y L S Sbjct: 106 ETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDS 165 Query: 174 -----FTTGTKDAD----QEFLQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKM 217 + G D Q L++L + V E + FY FA + M Sbjct: 166 QLYTLYGEGCYTVDGKQYQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEI 273 G A+ ++I RDE LHL +++N I ++P + +E +Q++ + A E Sbjct: 226 EGNAKIIKFIARDEYLHLTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEK 285 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGL 309 +A G +GLN +Y+++I N R +GL Sbjct: 286 EWAAYLFKDGSMIGLNEDILVKYVEYITNIRMQAVGL 322 >gi|28377561|ref|NP_784453.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum WCFS1] gi|254555734|ref|YP_003062151.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum JDM1] gi|300769755|ref|ZP_07079637.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179714|ref|YP_003923842.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270393|emb|CAD63296.1| ribonucleoside-diphosphate reductase, beta chain [Lactobacillus plantarum WCFS1] gi|254044661|gb|ACT61454.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum JDM1] gi|300492663|gb|EFK27849.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045205|gb|ADN97748.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ST-III] Length = 336 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 21/195 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +D+A W+ L DD R ++ G ++L + + + Sbjct: 33 TWEK---LTEQFWLDTRIPVSNDMADWRE---LDDDHRWVVGHVFGGLTLLDTLQSQDGL 86 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-DE-GELFNMYREVPSITAKA 159 A+ R++ L F E+VH+ ++ I +L DE E+F+ + AKA Sbjct: 87 QALRRNVLTSHETAVLNNIQFMESVHAKSYSTIFETLNTPDEINEIFDWSDSEEFLQAKA 146 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 W + + + V E FY+GF L N++ Sbjct: 147 QWIYKLYDNIDEDPLKQKVAN-------------VFLETFLFYSGFYTPLYYLGHNQLPN 193 Query: 220 IAEQYQYIMRDESLH 234 +AE + I+RDES+H Sbjct: 194 VAEIIKLILRDESVH 208 >gi|195977892|ref|YP_002123136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974597|gb|ACG62123.1| ribonucleotide reductase of class Ib (aerobic) beta subunit NrdF [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 319 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/294 (21%), Positives = 122/294 (41%), Gaps = 56/294 (19%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAVEKDLVGKVFGGLTLLDTMQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 EAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEDIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ A Q+ + ++ E FY+GF L NK+ Sbjct: 127 NLFLQNKAKIINDIYKNGS--ALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEF--------QQKSRTM 264 +AE + I+RDES+H G + ++ + E+ W + +Q ++T+ Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELSDSEQESLRDWMYDLLYQLYENEEQYTKTL 239 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 E+ + E M ++++ AN+ +G +PLF T N Sbjct: 240 YD-----EVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275 >gi|223043034|ref|ZP_03613082.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus capitis SK14] gi|314933044|ref|ZP_07840410.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus caprae C87] gi|222443888|gb|EEE49985.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus capitis SK14] gi|313654363|gb|EFS18119.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus caprae C87] Length = 322 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 72/296 (24%), Positives = 127/296 (42%), Gaps = 22/296 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LTD E+ K+ L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTDSEKETFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170 + A E +H+ ++ +I T+L + L + + E P + K++ + L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIIDNYHKLW 141 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + DQ + V V E FY+GF L L KM E + I+ D Sbjct: 142 GKEASI----FDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194 Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 ES+H F G+D ++ E ++ Q+ +L+E E++Y H + +GL Sbjct: 195 ESIHGVFTGLDA-QSLRNELSESEKQKADQEMYKLLNELYDNEVSYTH--LLYDDIGL-T 250 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFETRVTEY 343 Y+++ N+ +G EP F+ E F P + +D K +FF + Y Sbjct: 251 EDVLNYVRYNGNKALSNLGFEPYFE--EREFNPIIENALDTSTKNHDFFSVKGDGY 304 >gi|228861159|ref|YP_002854182.1| ribonucleotide reductase B subunit [Enterobacteria phage RB51] gi|227438833|gb|ACP31145.1| ribonucleotide reductase B subunit [Enterobacteria phage RB51] Length = 392 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 72/315 (22%), Positives = 139/315 (44%), Gaps = 47/315 (14%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L ++ + NL + + +S+ + +S+P Sbjct: 48 WRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSI----------- 155 ++ F E +HS ++ +I+ +L D ++F+ + + SI Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMKRAESIGRYYDDVIEKT 164 Query: 156 ----TAKANWALQYTQTLSSPSFTTGTKDA-------DQEFLQDLFV-FYVV--FEGMWF 201 AKA+ ++Y + +++ KDA +E ++ L++ +V+ E + F Sbjct: 165 RYWQNAKAD--IEYQKEINADE--DDIKDAIEHEMYWKRELMRSLYLCLHVINALEAIRF 220 Query: 202 YTGFAQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWT---KE 256 Y FA + + + M G A+ ++I RDE LHL +I Q+++ + W KE Sbjct: 221 YVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAKE 280 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFK 314 +Q++ + E E +A G V GLN S ++ ++ R Q GL P+ Sbjct: 281 CEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITD 340 Query: 315 Y-TENPFPWMSEVID 328 ++P+PW+ E ++ Sbjct: 341 APVKHPYPWIREYLN 355 >gi|312262463|gb|ADQ52758.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage PX29] Length = 376 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/298 (21%), Positives = 118/298 (39%), Gaps = 37/298 (12%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A+ S+ L++ E+ + +NL + + +S+ L +S+ Sbjct: 48 WRPEEVDLSKD-AIDYSR--LSEQEQYVFTQNLKYQSLLDSVQGRAPNLVFLPIVSDVAL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ +F E +HS ++ +I+ +L +D +F+ I A+A QY Sbjct: 105 ETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDAKIMARATSVTQYYDDLISEL 164 Query: 166 ------TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 Q++ SP +E + E M FY FA S G M G Sbjct: 165 KTYDLLRQSVFSPELRVAQLTNVKEAMYLAMHAVNALEAMRFYVSFACTFSFGERGLMEG 224 Query: 220 IAEQYQYIMRDESLHLNF----------GIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 A+ + I RDE LHL G D + I + + K+ ++ E Sbjct: 225 NAKIMRLIARDEQLHLKGTQYLIRAWQNGDDDSEMVDI------ARRLESKAVSIFIEVA 278 Query: 270 LLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGL---EPLFKYTENPFPWM 323 E +A + + + GL+ Y+ ++ R +GL + + ++P PW+ Sbjct: 279 EQEKEWAKDLLGNVSIPGLSLAEMIDYIDYLTGSRMRSVGLPVPDEVNVPIKHPLPWI 336 >gi|295395248|ref|ZP_06805456.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium mcbrellneri ATCC 49030] gi|294972010|gb|EFG47877.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium mcbrellneri ATCC 49030] Length = 324 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/270 (22%), Positives = 114/270 (42%), Gaps = 29/270 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LTDDE+L+ R +++ +++ P Sbjct: 34 NFWLPEKVPLSNDVQSWAT---LTDDEKLLTMRVFTGLTLLDTIQGTVGAVSLIPDALTP 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQYTQ 167 AF E+VH+ ++ I ++L +DE F E ++ KA + Y + Sbjct: 91 HEEAVYTNIAFMESVHAKSYSSIFSTLCNTREIDEA--FRWSTENQNLQKKAQIIVDYYR 148 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 149 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLI 193 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + I Q + N + E + + +L++ E+ Y H+ VG Sbjct: 194 IRDEAVH-GYYIGYKYQRALANESTERRDELKDYTFALLYDLYENEVQYTHDLYDS--VG 250 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 L + ++++ + AN+ +G E +F T Sbjct: 251 L-SEDVKKFLNYNANKALMNLGYEAMFPST 279 >gi|332976575|gb|EGK13416.1| ribonucleotide-diphosphate reductase subunit beta [Desmospora sp. 8437] Length = 295 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 19/205 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-- 111 W P ++ D W + N + ++ + ++ N F E++ + +L + + ++N Sbjct: 30 WDPKDIDFSQDRKDWATFNEI--EKGMSLRLNSVFLGGEEAVTKD--LLPLIQVIANEGR 85 Query: 112 -ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 E YL +EEA H F+ ++ LG+ G+L SI N+ + + L Sbjct: 86 LEEEMYLTTFLWEEAKHVEVFRRMVDELGIT-GDL--------SIYHSDNYKKIFYEYLP 136 Query: 171 SPSFTTGTKDADQEFLQDLFVFY-VVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIM 228 + T+D E + V Y ++ EGM TG+ + +S R M G + ++Y+ Sbjct: 137 E-AMERLTRDPSPEAQAEASVTYNMIVEGMLAETGYHSTFMSYKRLGIMPGTVQAFEYLK 195 Query: 229 RDESLHLNFGIDVINQIKIENPHLW 253 RDES H+ +G+ +++++ E+ H+W Sbjct: 196 RDESRHICYGVYLLSRLIAEHDHIW 220 >gi|322500276|emb|CBZ35354.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 196 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 12/158 (7%) Query: 4 NTGLSPIQAGEKRVNVDD-KRMLNARSDVNQ--------LLPLKYGWAWEKYLSACNNHW 54 N + P+ AG + + D NA + Q L P++Y W KY + W Sbjct: 41 NLVMKPVAAGAEVLTADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIW 100 Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE R Sbjct: 101 TVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEAR 157 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + Q E +HS T+ ++ + D E + + Sbjct: 158 AFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAI 195 >gi|225870271|ref|YP_002746218.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. equi 4047] gi|225699675|emb|CAW93380.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. equi 4047] Length = 319 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/294 (21%), Positives = 123/294 (41%), Gaps = 56/294 (19%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRR---LSAVEKDLVGKVFGGLTLLDTMQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 EAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEDIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ A Q+ + ++ E FY+GF L NK+ Sbjct: 127 NVFLQNKAKIINDIYENGS--ALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEF--------QQKSRTM 264 +AE + I+RDES+H G + +++ + E+ W + +Q ++T+ Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELSESEQESLRDWMYDLLYQLYENEEQYTKTL 239 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 E+ + E M ++++ AN+ +G +PLF T N Sbjct: 240 YD-----EVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275 >gi|153819185|ref|ZP_01971852.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio cholerae NCTC 8457] gi|126510271|gb|EAZ72865.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio cholerae NCTC 8457] Length = 171 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 6/130 (4%) Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKE 256 FY FA + M G A+ + I RDE+LHL ++N ++ +E Sbjct: 3 FYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEE 62 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-K 314 +Q+S + EA E +A G +GLN QY+++I N R +GLEP + Sbjct: 63 CKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPA 122 Query: 315 YTENPFPWMS 324 T NP PW++ Sbjct: 123 ATNNPIPWIN 132 >gi|15675308|ref|NP_269482.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes M1 GAS] gi|21910586|ref|NP_664854.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS315] gi|28895723|ref|NP_802073.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes SSI-1] gi|71910937|ref|YP_282487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS5005] gi|94988801|ref|YP_596902.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS9429] gi|94992686|ref|YP_600785.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS2096] gi|306826388|ref|ZP_07459706.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes ATCC 10782] gi|13622486|gb|AAK34203.1| ribonucleotide diphosphate reductase small subunit [Streptococcus pyogenes M1 GAS] gi|21904787|gb|AAM79657.1| putative ribonucleoside-diphosphate reductase 2 beta subunit [Streptococcus pyogenes MGAS315] gi|28810972|dbj|BAC63906.1| putative ribonucleotide diphosphate reductase, small subunit [Streptococcus pyogenes SSI-1] gi|71853719|gb|AAZ51742.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS5005] gi|94542309|gb|ABF32358.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS9429] gi|94546194|gb|ABF36241.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS2096] gi|304431419|gb|EFM34410.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes ATCC 10782] Length = 319 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 46/289 (15%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G DA Q+ + ++ E FY+GF L NK+ Sbjct: 127 NEFLQEKARIINDIYANG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270 +AE + I+RDES+H G + + + + EN W + +Q + TL Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQLYENEEKYTKTL 239 Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + + + E M ++++ AN+ +G +PLF T N Sbjct: 240 YDGVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275 >gi|258544274|ref|ZP_05704508.1| ribonucleoside-diphosphate reductase, beta subunit [Cardiobacterium hominis ATCC 15826] gi|258520512|gb|EEV89371.1| ribonucleoside-diphosphate reductase, beta subunit [Cardiobacterium hominis ATCC 15826] Length = 325 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 70/321 (21%), Positives = 134/321 (41%), Gaps = 25/321 (7%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 Q+ P +Y E + +++W+ TE D+ +K+ +T ER + R + + Sbjct: 11 QIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYKTV--ITPRERTALTRAMLAISQV 68 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 E V +YR+ PE A E H + +++ LG++E +F+ E Sbjct: 69 EVSV-KRFWGDLYRYFPKPEIDDVGGTFAESEIRHKDAYSFLLEKLGMNE--MFSQITEY 125 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQE-FLQDLFVFYVVFEGMWFYTGFAQILSL 211 P++ + + + + KD +E F+ L +F + E + + F I+S Sbjct: 126 PALMRRIEYMEDFMRD----------KDIGRERFVLSLVMFSLFVEHISLFGQFLIIMSF 175 Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + N GI+ + ++E +H FGI + I+ E+P L+T +F + + + + A Sbjct: 176 NKHRNLFKGISNAVEATSKEEEIHGRFGIALYGIIRDEHPRLFTPDFYDELQQLANHALE 235 Query: 271 LE---IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMS 324 E + + E F+ L+ + E Y+ N +G+ + W Sbjct: 236 AERGILRWIFEDGDLDFITLD--TVENYITNRYNNSLEILGINAPYLVDTKKLRETEWFD 293 Query: 325 EVIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 294 IEILSGKEGDFFYKRSTDYSK 314 >gi|310816082|ref|YP_003964046.1| ribonucleoside-diphosphate reductase, beta subunit [Ketogulonicigenium vulgare Y25] gi|308754817|gb|ADO42746.1| ribonucleoside-diphosphate reductase, beta subunit [Ketogulonicigenium vulgare Y25] Length = 317 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/300 (21%), Positives = 124/300 (41%), Gaps = 23/300 (7%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W S T+ E+ + R +++ + A+ + Sbjct: 25 SNFWLPEKVPLSNDIQSWSS---FTEAEKQLTIRVFTGLTLLDTIQSKAGAPALMKDALT 81 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 P F EAVH+ ++ I ++L E+ +R A+ N LQ L Sbjct: 82 PHEEAVFANICFMEAVHARSYSSIFSTL-CTTVEIDEAFR-----WAELNKDLQRKAKLI 135 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 +T T+ ++ + V E FY+GF L ++ A+ + I++D Sbjct: 136 EACYTDDTQPLKKK------IASVFLESFMFYSGFYLPLHWASRARLTNTADLIRLIIKD 189 Query: 231 ESLHLNFGIDVINQIKIE-NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 E++H + I Q+ P +E + + +L + +E +YA + +GL Sbjct: 190 EAVH-GYYIGYKFQLGYALLPEAEKEELKGFAYDLLLQLYEIECSYAADLYDG--IGLTE 246 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 +Q++ + AN+ +G +P+F NP + D + +FF + Y G Sbjct: 247 -DVKQFLHYNANKSLMNLGFDPIFPDEITNFNPAVLAALAPDANENHDFFSGSGSSYVIG 305 >gi|258510152|ref|YP_003183586.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476878|gb|ACV57197.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 317 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 18/205 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI---VLAIYRHLSN 110 W P ++ D W+ G+ + ER +I R F + E V ++ ++A+ R Sbjct: 37 WDPRDIDFTKDKEDWQ---GMNEAERRVILRLCSLFVAGEEAVTLDLLPLIMAVARE-GR 92 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 E YL FEEA H+ F+ + + + +L S+ K ++ + + L Sbjct: 93 LEEEMYLTTFLFEEAKHTEVFRRFLDEVAGETSDL--------SVFHKDHYRKIFYEYLP 144 Query: 171 SPSFTTGTKDADQEFLQDLFVFY-VVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIM 228 + D E + V Y +V EG+ TG+ A +L + NK+ G+ + + + Sbjct: 145 Q-AMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFYTALQKENKLPGLIQAIRLLQ 203 Query: 229 RDESLHLNFGIDVINQIKIENPHLW 253 RDES H+ +G +++++ EN H+W Sbjct: 204 RDESRHIGYGTYLLSRLISENAHIW 228 >gi|81428551|ref|YP_395551.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus sakei subsp. sakei 23K] gi|78610193|emb|CAI55242.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus sakei subsp. sakei 23K] Length = 318 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/285 (23%), Positives = 115/285 (40%), Gaps = 42/285 (14%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+S L D+E+ ++ G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRS---LPDNEKWIVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 ++ ++ P L F E+VH+ ++ I ++L N E+ I Sbjct: 75 ASLKANIRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTPNEIDEIFDWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + G+ LQ + V E FY+GF L NK+ Sbjct: 127 NEYLQYKANKINSIYQNGSP------LQQK-IASVFLETFLFYSGFYTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 +AE + I+RDES+H G + + + + E E Q +L++ E Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELAKAEQE-------ELQNWMYDLLYDLYANE 232 Query: 273 IAYAHETMPKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYT 316 Y HE + G Y+++ AN+ +G LF T Sbjct: 233 EKYTHEV----YDGTGWTEEVLTYLRYNANKALMNLGQGALFPDT 273 >gi|228476905|ref|ZP_04061550.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus salivarius SK126] gi|228251479|gb|EEK10624.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus salivarius SK126] Length = 319 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/282 (23%), Positives = 119/282 (42%), Gaps = 32/282 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSQTGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N E+ I + Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNS 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT + V E FY+GF L NK+ Sbjct: 127 NEYLQTKAKIINDIYENGTPLQKK-------VASTYLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +AE + I+RDES+H G + + ++ L +E Q+ R +++ LL Y +E Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQESFREWMYD--LLYQLYENEE 233 Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYTEN 318 + + E+ M F+ AN+ +G +PLF + N Sbjct: 234 LYTKSLYDGVGWTEEVMTFLRYNANKALMNLGQDPLFPDSAN 275 >gi|82503214|ref|YP_401656.1| BaRF1 [Human herpesvirus 4] gi|139424488|ref|YP_001129453.1| BaRF1 [Human herpesvirus 4 type 2] gi|238055355|sp|P0CAP6|RIR2_EBVB9 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|238055356|sp|P0CAP7|RIR2_EBVA8 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|238055357|sp|P0C701|RIR2_EBVG RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|1334857|emb|CAA24843.1| unnamed protein product [Human herpesvirus 4] gi|23893602|emb|CAD53406.1| ribonucleoside-diphosphate reductase small chain [Human herpesvirus 4] gi|64173256|gb|AAY41106.1| unknown [Human herpesvirus 4] gi|82703964|gb|ABB89233.1| BaRF1 [Human herpesvirus 4] Length = 302 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 71/302 (23%), Positives = 117/302 (38%), Gaps = 40/302 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W + + D K N + + K F A +E LV NI + + Sbjct: 23 NRWFAAHIVLTKDCGCLKLLN---ERDLEFYKFLFTFLAMAEKLVNFNID-ELVTSFESH 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y Q E VH T+ I+ L + N Y E ++ AK +W Sbjct: 79 DIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADEALQAKISWLRD--- 135 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 K A L + + +++ EG++F + F I L M GI YI Sbjct: 136 -----------KVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYI 184 Query: 228 MRDESLHLNFGIDVINQI--KIENPH-LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 RDE LH + N + K + P W +E + A +E A+ E +G Sbjct: 185 SRDELLHTRAASLLYNSMTAKADRPRATWIQE-------LFRTAVEVETAFI-EARGEGV 236 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVT 341 ++ + +Q+++ A+R IG PL+ + P +M+ + K+ NFFE + Sbjct: 237 TLVDVRAIKQFLEATADRILGDIGQAPLYGTPPPKDCPLTYMTSI----KQTNFFEQESS 292 Query: 342 EY 343 +Y Sbjct: 293 DY 294 >gi|293556439|ref|ZP_06675017.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] gi|291601403|gb|EFF31677.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] Length = 316 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/276 (23%), Positives = 122/276 (44%), Gaps = 26/276 (9%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A W+ T VP+ +DL WK+ L+D E+ ++K+ +G A ++L + Sbjct: 18 YVWDK---ATAQFWLDTRVPVSNDLLDWKN---LSDVEKKVVKKAVGGLALLDTLQSEEG 71 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + A+ ++ + + L F E++H+ T+ I+ SL N ++++ I N Sbjct: 72 LYALKKNARTQKEKAVLSDFTFMESIHAKTYGTILISL--------NTFKDIEEIYDWMN 123 Query: 161 W--ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 +Q+ + + GT + V V EG+ +Y+ F L NK+ Sbjct: 124 NDPKMQFKAEKINEVYQNGTP-------MQVKVASVFLEGILYYSNFFIPLWYRGQNKLA 176 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + ++RDES+H + Q E EF T L+E E AY E Sbjct: 177 NLAELIKLVIRDESVHGTYLGYKFRQDFEELTLEEKDEFTNWMYTFLNELLKNEFAYTEE 236 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + +GL + ++++ AN+ +G F+ Sbjct: 237 VYSE--IGL-VEDIKTFVKYNANKSLQNMGFGIYFE 269 >gi|319944853|ref|ZP_08019115.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia mirabilis ATCC 51599] gi|319741423|gb|EFV93848.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia mirabilis ATCC 51599] Length = 333 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 66/288 (22%), Positives = 114/288 (39%), Gaps = 29/288 (10%) Query: 35 LPLKYGWAW---EKYLSACN----NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 +PL W EK L N N W+P +VP+ +D+ W + L ++E+ + R Sbjct: 19 VPLAINWNRLQDEKDLEVWNRLTANFWLPEKVPLSNDVQSWAT---LREEEQTLTIRVFT 75 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGEL 145 +++ ++ P L AF EAVH+ ++ I ++L + E Sbjct: 76 GLTLLDTIQNTVGAPSMMPDAQTPHEEAVLTNIAFMEAVHARSYSSIFSTLCSTREVDEA 135 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 F E P + AKA L+ S P LQ + V E FY+GF Sbjct: 136 FRWSEENPQLQAKARLILEEYDAASDP-------------LQRK-IASVFLESFLFYSGF 181 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 + K+ A+ + I+RDE++H + + P + + ++L Sbjct: 182 YLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQRALARLPEADQARLKDFAFSLL 241 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E +E Y E + +GL + ++ + AN+ +G E LF Sbjct: 242 FELYEVEALYTEELYDR--IGLTE-DVKAFLHYNANKALQNLGYEALF 286 >gi|332638431|ref|ZP_08417294.1| ribonucleotide-diphosphate reductase subunit beta [Weissella cibaria KACC 11862] Length = 320 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/276 (24%), Positives = 119/276 (43%), Gaps = 30/276 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ +T++E ++ G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---MTEEEHYLVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159 ++ R + L F E+VH+ ++ I +L N E+ I + Sbjct: 75 ASLKRSVRTQHEEAVLNNIEFMESVHAKSYSSIFETL--------NTPAEIDEIFSWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + TG D Q+ + +F+ E FY+GF L NK+ Sbjct: 127 NDFLQYKAQRINQIYQTG--DDLQKKVASVFL-----ETFLFYSGFYTPLWYLGHNKLNN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +AE + I+RDES+H G + + ++ L E QQ M LL++ E Sbjct: 180 VAEIIKLILRDESVH---GTYIGYKFQLGFNEL--TEDQQSEMKMWMYDLLLDLYNNEEQ 234 Query: 280 MPKG-FVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313 K + G+ S ++++ AN+ +G +PLF Sbjct: 235 YTKHLYDGIGWTESVLTFLRYNANKALMNLGQDPLF 270 >gi|329117318|ref|ZP_08246035.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parauberis NCFD 2020] gi|326907723|gb|EGE54637.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parauberis NCFD 2020] Length = 321 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 65/289 (22%), Positives = 120/289 (41%), Gaps = 46/289 (15%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LPAKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N +E+ I + Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFDWTNS 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G DA Q+ + ++ E FY+GF L NK+ Sbjct: 127 NEFLQNKAKIINDIYENG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270 +AE + I+RDES+H G + +++ K E+ W + +Q + +L Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEKQEDFKEWMYDLLYQLYENEENYTKSL 239 Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + + + E M ++++ AN+ +G +PLF T N Sbjct: 240 YDQVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275 >gi|326800312|ref|YP_004318131.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21] gi|326551076|gb|ADZ79461.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21] Length = 327 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 78/315 (24%), Positives = 137/315 (43%), Gaps = 26/315 (8%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 G WE+ + W+ TE D+ +WK LT + + K+ LG ++L ++ Sbjct: 18 GMFWEQNI---RQFWIDTEYIPSKDIDVWKK---LTPEMQETYKKALGGLTLLDTLQSHT 71 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITA 157 + I H+ + + L EA+H+ ++ I T++ + ELF ++ + Sbjct: 72 GMPKILDHIDGLQSKAVLSYMCMMEAIHAKSYSTIFTTVASTPEINELFEWVQDNKYLQF 131 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA QY ++L K E L V+ E FY+GF L L +M Sbjct: 132 KAATIDQYYRSLDK-------KKVSNEELYMSLAASVLLESFLFYSGFFIPLWLAGQGQM 184 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 V A+ + I+ DES+H F + I K+ N +E ++K +L E+ Y Sbjct: 185 VASADIIKKIVADESIHGVFVGLLAQDIFRKLSN----QEEVKKKVVDLLMLLYENELKY 240 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKN 334 E VGL A ++Y+++ AN+ +G E LF+ E NP ++ + + Sbjct: 241 TEEIYTD--VGLTA-EVKEYVRYNANKALMNLGFEELFEVKEVNPIVLNGLNLE-TTQHD 296 Query: 335 FFETRVTEYQQGAEL 349 FF + T Y++ ++ Sbjct: 297 FFSKKSTNYEKATQI 311 >gi|300934659|ref|ZP_07149915.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium resistens DSM 45100] Length = 332 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 68/313 (21%), Positives = 123/313 (39%), Gaps = 36/313 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +DL W NGL+D ER + R +++ A ++ + Sbjct: 43 NFWLPEKVPLSNDLKDW---NGLSDIERTLTMRVFTGLTLLDTMQATVGEISQIQDAQTE 99 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 AF ++VH+ ++ + ++L PSI A WA+ L Sbjct: 100 HEEAVYTNIAFMQSVHARSYSSVFSTLA-----------NTPSINAAYEWAVN-NDVLQQ 147 Query: 172 PSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 + + F +D V + + Y GF L + A+ + I+ Sbjct: 148 RCRSV----LEHYFGEDPLKRKVSATLLSSVLLYAGFYLPLHFSTRGVLTNTADMIRLIL 203 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287 RD+++H + Q +EN T E + + +L + LE+ Y+ E P G + Sbjct: 204 RDKAVH-GYYSGYKFQRGLENHPERTAELSEFTHALLEKLFELEVLYSAELYEPLGLM-- 260 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLKKEKN--FFETRVTEYQ 344 P +++++ AN+ +G P F E P + + ++N FF + Y Sbjct: 261 --PDVVKFVKYNANKALMNLGYHPHFAAEETDVSPEILSALTPGADENHDFFSGSGSSYI 318 Query: 345 QG-----AELKWD 352 G A+ WD Sbjct: 319 MGKAEETADTDWD 331 >gi|73663294|ref|YP_302075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495809|dbj|BAE19130.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 322 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 124/297 (41%), Gaps = 24/297 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LTD E+ K+ L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LTDPEKEAFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMYREVPSITAKANWALQYTQTL 169 + A E +H+ ++ +I T+L L E L E P + K++ + L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTL-LPSSETNYLLDKWVIEEPHLKYKSDKIINNYHKL 140 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + DQ + V V E FY+GF L L KM E + I+ Sbjct: 141 WGKEASI----YDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILL 193 Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DES+H F G+D ++ E + Q+ +L + E+AY H +GL Sbjct: 194 DESIHGVFTGMDA-QSLRNELSESEKLQADQEMYKLLDDLYKNEVAYTHSLYDD--IGL- 249 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTEY 343 A Y+++ N+ +G +P F+ E F P + +D K +FF + Y Sbjct: 250 AEDVLNYVRYNGNKALSNLGFDPYFE--EREFNPIIENALDTTTKNHDFFSVKGDGY 304 >gi|254230294|ref|ZP_04923683.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio sp. Ex25] gi|151937191|gb|EDN56060.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio sp. Ex25] Length = 242 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 6/135 (4%) Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL--- 252 E + FY FA + M G A+ + I RDE+LHLN +IN ++ Sbjct: 69 LEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFTFM 128 Query: 253 -WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE 310 +E +Q + EA E +A G +GLN QY+++I N R +GL Sbjct: 129 QIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLP 188 Query: 311 PLF-KYTENPFPWMS 324 + + T NP PW++ Sbjct: 189 AAYPEATTNPIPWIN 203 >gi|255327220|ref|ZP_05368295.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia mucilaginosa ATCC 25296] gi|255295838|gb|EET75180.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia mucilaginosa ATCC 25296] Length = 325 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/303 (22%), Positives = 127/303 (41%), Gaps = 28/303 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ WK+ LT++E+ + R +++ +++ Sbjct: 33 TGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVFTGLTLLDTIQGTVGAVSLLPDAV 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 AF E+VH+ ++ I ++L + E F E + KA L Sbjct: 90 TAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWAAENEHLQKKAKIVL---- 145 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 S+ TG ++ L E FY+GF + K+ A+ + I Sbjct: 146 -----SYYTGDDPLKKKVASTL------LESFLFYSGFYLPMYWSSHAKLTNTADLIRLI 194 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + G + E+ E ++ + +L+E E+AY H ++ G VG Sbjct: 195 IRDEAVHGYYIGYKFQRGLAKESAER-QAELKEYTFNLLYELYENEVAYTH-SLYDG-VG 251 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKN--FFETRVTEY 343 + ++++ + AN+ +G EP+F T N P + + ++N FF + Y Sbjct: 252 W-SEDVKKFLHYNANKALMNLGYEPMFPATVTNVSPAILSALSPNADENHDFFSGSGSSY 310 Query: 344 QQG 346 G Sbjct: 311 VIG 313 >gi|256832970|ref|YP_003161697.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM 20603] gi|256686501|gb|ACV09394.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM 20603] Length = 325 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 69/305 (22%), Positives = 127/305 (41%), Gaps = 32/305 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ +++ Sbjct: 33 VGNFWVPEKVPVSNDIQSWAT---LTPQEQELTTRVFTGLTLLDTIQGTVGAVSLIPDAL 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 P L AF E+VH+ ++ I ++L +DE F E P + KA L+Y Sbjct: 90 TPHEEAVLTNIAFMESVHAKSYSTIFSTLISTPEIDEA--FRWSEENPHLQRKAEIILEY 147 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 + D + V + E FY+GF + K+ A+ + Sbjct: 148 YR-------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIR 192 Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 I+RDE++H + G ++ P +E + + +L+E E+AY E++ G Sbjct: 193 LIIRDEAVHGYYIGYKYQKGLEAVTPER-REELKAYTFDLLYELYDNEVAYT-ESLYDG- 249 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVT 341 VGL ++++++ AN+ +G E LF E NP + + + +FF + Sbjct: 250 VGLTE-DVKKFLRYNANKALLNLGYEALFPKDETDVNPAILSALSPNADENHDFFSGSGS 308 Query: 342 EYQQG 346 Y G Sbjct: 309 SYVIG 313 >gi|19746348|ref|NP_607484.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS8232] gi|50914444|ref|YP_060416.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10394] gi|71903783|ref|YP_280586.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS6180] gi|94994624|ref|YP_602722.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10750] gi|139473584|ref|YP_001128300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes str. Manfredo] gi|19748543|gb|AAL97983.1| ribonucleotide diphosphate reductase small subunit [Streptococcus pyogenes MGAS8232] gi|50903518|gb|AAT87233.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10394] gi|71802878|gb|AAX72231.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS6180] gi|94548132|gb|ABF38178.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10750] gi|134271831|emb|CAM30066.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes str. Manfredo] Length = 319 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 46/289 (15%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G DA Q+ + ++ E FY+GF L NK+ Sbjct: 127 NEFLQEKARIINNIYANG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270 +AE + I+RDES+H G + + + + EN W + +Q + TL Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQLYENEEKYTKTL 239 Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + + + E M ++++ AN+ +G +PLF T N Sbjct: 240 YDGVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275 >gi|94990703|ref|YP_598803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10270] gi|94544211|gb|ABF34259.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10270] Length = 320 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 46/289 (15%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGLTLLDTMQSETGV 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 76 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 127 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G DA Q+ + ++ E FY+GF L NK+ Sbjct: 128 NEFLQEKARIINNIYANG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 180 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270 +AE + I+RDES+H G + + + + EN W + +Q + TL Sbjct: 181 VAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQLYENEEKYTKTL 240 Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + + + E M ++++ AN+ +G +PLF T N Sbjct: 241 YDGVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 276 >gi|283457964|ref|YP_003362570.1| ribonucleotide reductase subunit beta [Rothia mucilaginosa DY-18] gi|283133985|dbj|BAI64750.1| ribonucleotide reductase, beta subunit [Rothia mucilaginosa DY-18] Length = 325 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/266 (21%), Positives = 113/266 (42%), Gaps = 23/266 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ WK+ LT++E+ + R +++ +++ Sbjct: 33 TGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVFTGLTLLDTIQGTVGAVSLLPDAV 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 AF E+VH+ ++ I ++L + E F E + KA L Sbjct: 90 TAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWASENEHLQKKAKIVL---- 145 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 S+ TG ++ V + E FY+GF + K+ A+ + I Sbjct: 146 -----SYYTGDDPLKKK------VASTLLESFLFYSGFYLPMYWSSHAKLTNTADLIRLI 194 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 +RDE++H + Q + E ++ + +L+E E+AY H ++ G VG Sbjct: 195 IRDEAVHGYYIGYKFQQGLAKESAERQAELKEYTFNLLYELYENEVAYTH-SLYDG-VGW 252 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313 + ++++ + AN+ +G EP+F Sbjct: 253 -SEDVKKFLHYNANKALMNLGYEPMF 277 >gi|254362523|ref|ZP_04978626.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica PHL213] gi|153094123|gb|EDN75022.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica PHL213] Length = 293 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 24/251 (9%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 +Y + PE A E H + +++ LGL+E M+ ++ I N + Sbjct: 47 LYCYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLNE-----MFSQIHEIEPLMN-RI 100 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAE 222 +Y + SF EF+ L +F + E + + F ++S + N GI+ Sbjct: 101 RYME-----SFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMSFNKHKNLFKGISN 155 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + ++E +H FGI + ++ E+ L+T EF + +T+ ++A E + Sbjct: 156 AVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAFEAERGILDWIFEE 215 Query: 283 GFVG-LNAPSCEQYMQFIANRRCHQIGLEP-------LFKYTENPFPWMSEVIDLKKEKN 334 G + + + E Y++ N +GLEP L K TE W I KE + Sbjct: 216 GDLSFITKATVENYIKNRYNNSLSILGLEPPHDIDPELLKETE----WFDIEILSTKETD 271 Query: 335 FFETRVTEYQQ 345 FF R T+Y + Sbjct: 272 FFNKRSTDYSK 282 >gi|146301802|ref|YP_001196393.1| ribonucleotide reductase [Flavobacterium johnsoniae UW101] gi|146156220|gb|ABQ07074.1| ribonucleotide reductase [Flavobacterium johnsoniae UW101] Length = 324 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 69/307 (22%), Positives = 128/307 (41%), Gaps = 19/307 (6%) Query: 45 KYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 ++ A N +W+ TEV D + + L E+ +K +L A E V + Sbjct: 20 QFTEAINKAYWVHTEVDFTADTQDFHAHLSLA--EKTAVKNSLLAIAQIEVAV-KSFWGN 76 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 IY H PE A E HS + ++ LG ++ F +VP I + ++ Sbjct: 77 IYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDE--FEKLLDVPVIRRRVDY-- 132 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAE 222 LS+ T ++D +++++ L +F ++ E + ++ FA +LS R M ++ Sbjct: 133 -----LSNVLKDTKSQD-NRKYMVSLILFSILIENVSLFSQFAILLSFTRFKGYMKNVSN 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + DE +H N GI +IN+I+ E P + +E R + ++ +E + Sbjct: 187 IIAWTSIDEQIHANGGIYIINKIREEFPDYFDEETLALVRETVKDSIAVESDILDWIFEE 246 Query: 283 GFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSEVIDLKKEKNFFET 338 G + + +M+F + QI + +F + W E + +FF Sbjct: 247 GEIESIKKGDLVNFMKFRIDESLKQINIPVIFDVKVEDYKALAWFEEEVFANSLDDFFAK 306 Query: 339 RVTEYQQ 345 R EY + Sbjct: 307 RPVEYTK 313 >gi|221104331|ref|XP_002154681.1| PREDICTED: similar to ribonucleotide reductase small subunit, partial [Hydra magnipapillata] Length = 261 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 34/212 (16%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL--MIKRNLGFFASSESL 95 K+ W+ Y + +W E+ +D + L D+ + IKR L FFA ++S+ Sbjct: 57 KHKVIWDLYKKQKDAYWTAEEIDFSND-----RHDFLKVDKNIQHFIKRILAFFAGADSI 111 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFE---EAVHSHTFQYIITSLGLD---EGELFNMY 149 V N I + LS ++ + F+ E HS + ++ + D EL N + Sbjct: 112 VNIN----IKKKLSKITVKEAEIAYGFQQMMEDTHSEVYADMLIKIITDPVERDELINAF 167 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 + V SI WA ++ + ++ V + +FEG+ F FA I Sbjct: 168 KTVASIKRMIQWAQRWINSKRRIGYS--------------IVVFCIFEGLMFSGAFAGIY 213 Query: 210 SLGRA---NKMVGIAEQYQYIMRDESLHLNFG 238 L + + M G+ + I +DE +H FG Sbjct: 214 WLKKILGEDIMKGLIQSNNLIAKDEGMHTIFG 245 >gi|306833073|ref|ZP_07466204.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus bovis ATCC 700338] gi|304424782|gb|EFM27917.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus bovis ATCC 700338] Length = 320 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 66/281 (23%), Positives = 125/281 (44%), Gaps = 30/281 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + + V Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAEEKDLVGKVFGGLTLLDTMQSESGV 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N E+ +I + Sbjct: 76 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEAIFEWTNS 127 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G +A Q+ + F+ E FY+GF L NK+ Sbjct: 128 NDYLQKKAKIINDIYENG--NALQKKVASTFL-----ETFLFYSGFFTPLYYLGNNKLAN 180 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +AE + I+RDES+H G + + ++ L ++E Q R +++ L ++ E Sbjct: 181 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQDNFREWMYDL-LYQLYENEEN 235 Query: 280 MPKG-FVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 K + G+ ++++ AN+ +G +PLF T N Sbjct: 236 YTKSLYDGVGWTDEVLTFLRYNANKALMNLGQDPLFPDTAN 276 >gi|254505962|ref|ZP_05118107.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus 16] gi|219551185|gb|EED28165.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus 16] Length = 323 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 66/272 (24%), Positives = 109/272 (40%), Gaps = 38/272 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D+ WK LT +E+ + R L + ++ V ++A R Sbjct: 32 NFWLPEKVPLSNDIQTWKQ---LTQEEQTLTIRVFTGLTLLDTIQNTVGAPALMADAR-- 86 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYT 166 P L AF EAVH+ ++ + ++L E F E P + KA L+ Sbjct: 87 -TPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFRWAEENPLLQKKAQLVLEDY 145 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 P V V E FY+GF + K+ A+ + Sbjct: 146 LAQDDPLKKK--------------VASVFLESFLFYSGFYLPMHWSSRAKLTNTADLIRL 191 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA-----TLLEIAYAHETMP 281 I+RDE++H + I Q+ + + QQ+ + EA +L EI + Sbjct: 192 IIRDEAIH-GYYIGYKFQLA------FNELSQQEQAKVKDEAYSLMFSLYEIESQYTESL 244 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VGL + ++ + AN+ +G EPLF Sbjct: 245 YDQVGLTE-DVKHFLHYNANKALMNLGFEPLF 275 >gi|269866968|ref|XP_002652448.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220062479|gb|EED41609.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 100 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 + ++ EA +E + E++P +G+N QY++F+A+R +G + ++ + NPF Sbjct: 2 KDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFD 60 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQG 346 +M E I L+ + NFFE R YQ+G Sbjct: 61 FM-ENISLQGKTNFFERREANYQKG 84 >gi|323495950|ref|ZP_08101016.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] gi|323318985|gb|EGA71930.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] Length = 323 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 68/271 (25%), Positives = 110/271 (40%), Gaps = 36/271 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D+ WK LT++E+ + R L + ++ V ++A R Sbjct: 32 NFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGLTLLDTIQNTVGAPALMADAR-- 86 Query: 109 SNPECRQYLLRQAFEEAVH----SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164 P L AF EAVH S F + T+ +DE F E P + KA L+ Sbjct: 87 -TPHEEAVLTNIAFMEAVHARSYSSVFSTMCTTPQIDEA--FRWADENPLLQKKAQLVLE 143 Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 P V V E FY+GF + K+ A+ Sbjct: 144 DYLAQGDPLKKK--------------VASVFLESFLFYSGFYLPMHWSSRAKLTNTADLI 189 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAHETMPK 282 + I+RDE++H G + + ++ L +E Q K + + +L EI + Sbjct: 190 RLIIRDEAIH---GYYIGYKFQLAFNELSEQE-QAKVKDEAYSLMFSLYEIESQYTESLY 245 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VGL + ++ + AN+ +G EPLF Sbjct: 246 DQVGLTE-DVKHFLHYNANKALMNLGFEPLF 275 >gi|66391516|ref|YP_239041.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB43] gi|62288604|gb|AAX78587.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB43] Length = 391 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 60/305 (19%), Positives = 120/305 (39%), Gaps = 36/305 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + + + E+++ NL + +++ LA S+ Sbjct: 49 WRPEEVDLSIDRMQYAK---MPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSM 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169 ++ AF E +HS ++ +I +L +D + F+ +I ++ +Y L Sbjct: 106 ETWIETWAFSETIHSRSYTHIQRNLHIDPAKEFDKILRNEAIMKRSASMTKYYDDLIAEC 165 Query: 170 ------------------SSPSFTTGTKDADQEFLQDLFVFYV------VFEGMWFYTGF 205 S + ++ + Y+ E + FY F Sbjct: 166 HELKNIVLKIEMMTSHGYPDESIAEYEQKRKEQMRKCKVALYLCMHAVNALEAIRFYVSF 225 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKS 261 + KM G A+ + I RDE+LH I Q+ ++P + ++++++ Sbjct: 226 TFTFNFAEQGKMEGNAKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMAEIAYQYEEEA 285 Query: 262 RTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + E E +A G V G+ S Y++ + ++R +GL+ FK + NP+ Sbjct: 286 TQIFLEVYEQEKEWAEHLFSIGDVDGVTLKSTIAYIEHLTDQRMRAVGLQSPFKPSPNPY 345 Query: 321 PWMSE 325 PWM++ Sbjct: 346 PWMNK 350 >gi|312862767|ref|ZP_07723007.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus vestibularis F0396] gi|322516573|ref|ZP_08069487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus vestibularis ATCC 49124] gi|311101627|gb|EFQ59830.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus vestibularis F0396] gi|322124843|gb|EFX96267.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus vestibularis ATCC 49124] Length = 320 Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 67/282 (23%), Positives = 118/282 (41%), Gaps = 32/282 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAKEKDLVGKVFGGLTLLDTMQSQTGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N E+ I + Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNS 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT + V E FY+GF L NK+ Sbjct: 127 NKYLQTKAKIINDIYENGTPLQKK-------VASTYLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +AE + I+RDES+H G + + ++ L +E Q+ R +++ LL Y +E Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQESFREWMYD--LLYQLYENEE 233 Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYTEN 318 + + E+ M F+ AN+ +G +PLF + N Sbjct: 234 LYTKSLYDGVGWTEEVMTFLRYNANKALMNLGQDPLFPDSAN 275 >gi|157149762|ref|YP_001450838.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gordonii str. Challis substr. CH1] gi|157074556|gb|ABV09239.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 319 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 67/277 (24%), Positives = 121/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159 A+ + + F E+VH+ ++ I ++L N E+ I A Sbjct: 75 DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIINEIYLNGTALEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 ET+ G VG + ++++ AN+ +G +PLF Sbjct: 236 TETLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|321309596|ref|YP_004191925.1| ribonucleotide reductase subunit beta [Mycoplasma haemofelis str. Langford 1] gi|319801440|emb|CBY92086.1| ribonucleotide reductase of class Ib (aerobic), beta subunit [Mycoplasma haemofelis str. Langford 1] Length = 327 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 73/300 (24%), Positives = 125/300 (41%), Gaps = 32/300 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE----SLVANNIVLAIYRHLS 109 W+ E+P+ D +W ++ LT++E+ + K+ L + SL NI ++I Sbjct: 34 WIDEEIPLSGDKLIWAAE--LTENEKDVYKKVLVGLTLLDTHQGSLGMTNIAMSI----D 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQ 167 NP L E +H+ ++ I ++L + ELF + P + K + + Sbjct: 88 NPHATAVLQFMGMMEQMHAKSYSTIFSTLATSQEIEELFKWSEQNPELQKKMEIISHHYE 147 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 + D E L V V E FY+GF +L L M+ E I Sbjct: 148 NIQ-----------DDESLYMAMVASVFLESFLFYSGFYYMLLLAGKGMMINSGEIINLI 196 Query: 228 MRDESLH-LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H L G+ + K N KE ++K +L E EI Y K +G Sbjct: 197 IRDEAIHGLYIGVLSMEIFKTFNEEK-QKEMKEKVICLLRELMANEIKYTELIYSK--IG 253 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343 L +++++ AN+ +G E + T+ NP + + + K +FF T+ Y Sbjct: 254 L-VEDVNRFLEYNANKALQNLGFENEYSTTDKDINPIVF-NGLKTTTKSHDFFSTKGNGY 311 >gi|327440528|dbj|BAK16893.1| ribonucleotide reductase, beta subunit [Solibacillus silvestris StLB046] Length = 320 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 27/296 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D+ WK + + K+ G +++ N + I ++ + + Sbjct: 31 WFPEEIAVSKDVKQWKEF-----EHQDTYKKVFGGLTLLDTVQTNIGMNEIAKYTPDFQE 85 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + L EA+H+ ++ YI T+L + E+ ++ V + N LQY Sbjct: 86 KAVLTVFGSFEAIHAKSYSYIFTTLCTNT-EIDEVFEWV-----QKNEFLQYKANRIGEV 139 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 +T K+ D E L V+ E FY+GF L LG + AE I+RDES+ Sbjct: 140 YT-AIKEDDPESLWKAMFASVMLESFLFYSGFFYPLYLGGQGVLRNSAEVISLILRDESI 198 Query: 234 H-LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFVGLN 288 H + G N K +T+E QQ+ +E L E+ Y + + GL Sbjct: 199 HGVAVGFFAQNIFKT-----FTEEKQQELTLWGYEYLLDLYQNEMKYTDDLYAE--TGL- 250 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +P ++Y+++ AN+ +GL+ +F E NP M+ + + +FF + + Y Sbjct: 251 SPEVKKYVRYNANKALMNLGLDTMFPDEEVNPVV-MNGISNTGSTYDFFSQKGSTY 305 >gi|158079504|ref|YP_001504317.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C] gi|157890348|dbj|BAF81476.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C] Length = 327 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 67/267 (25%), Positives = 113/267 (42%), Gaps = 27/267 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ T VP+ +D+ W L+D E+ +I + G +++ + + V ++ + Sbjct: 32 WLDTRVPVGNDVNDWAK---LSDMEQDLINKVFGGLTLLDTVQSESGVHSLLDDVRTQHE 88 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKANWALQYTQTLSS 171 L AF EAVH+ ++ I ++ FN E+ +I N LQY + + Sbjct: 89 EAVLNNIAFMEAVHAKSYSTIFST--------FNTPTEIDNIFEWVATNKRLQYKANIIN 140 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRD 230 + GT + V+ E FY+GF L LG A KMV AE + I+RD Sbjct: 141 DIYRNGTPLQKKSA-------SVLLESFLFYSGFYTPLRYLGEA-KMVNTAEIIKLIIRD 192 Query: 231 ESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 ES+H + I Q+ P KE +Q + + E Y E + +G Sbjct: 193 ESVHGTY-IGYKYQLGFNQLPETEQKEMEQWVIDLAFKLWENETQYTAELYSE--IGW-T 248 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++++ N+ +G+ PLF T Sbjct: 249 KDVNTFLEYNLNKALANLGMNPLFPTT 275 >gi|322499081|emb|CBZ34153.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 269 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 58/97 (59%), Gaps = 2/97 (2%) Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 N H+ K +++ ++ +A +E + + +P +G+NA QY++F+A+R +G Sbjct: 156 NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLG 215 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 E ++ T+ PF +M E+I L+ + NFFE +V EYQ+ Sbjct: 216 EEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQK 250 >gi|313206313|ref|YP_004045490.1| ribonucleotide reductase [Riemerella anatipestifer DSM 15868] gi|312445629|gb|ADQ81984.1| ribonucleotide reductase [Riemerella anatipestifer DSM 15868] gi|315023179|gb|EFT36190.1| ribonucleotide reductase [Riemerella anatipestifer RA-YM] gi|325336242|gb|ADZ12516.1| ribonucleoside-diphosphate reductase beta chain [Riemerella anatipestifer RA-GD] Length = 324 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 79/309 (25%), Positives = 133/309 (43%), Gaps = 23/309 (7%) Query: 45 KYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 +Y+ A N + W+ +EV D+ + S+ L E+ +K L A E V Sbjct: 20 QYIEAINKSFWVHSEVDFTADIQDFHSQ--LEPHEKNAVKNALLAIAQIEVSV-KTFWGN 76 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 +Y HL PE A E HS + ++ LG + E N+ E P+I + ++ Sbjct: 77 LYNHLPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYN-NEFLNVI-ENPAIRKRIDFL- 133 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAE 222 T L + + +T +E++ L +F ++ E + ++ FA ILS R M ++ Sbjct: 134 --TDVLRNSNSSTP-----KEYVSSLLLFSILIENVSLFSQFAIILSFTRFKGYMKNVSN 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + DE +H N GI +IN+IK E P L +E + ++ + LE Sbjct: 187 IIAWTSVDEQIHANAGIYIINKIKEEQPELLQEEDIEAIYNIVKTSVELEAEILDWIFEM 246 Query: 283 GFVGLNAPSCEQYMQFIANR---RCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFF 336 G L+ S +Q + F+ R +IG+ +F TE P W E + +FF Sbjct: 247 G--DLDHLSKKQLLSFMKYRIDDSLKRIGMASMFNITEEEYKPMVWFEEEVFANSLDDFF 304 Query: 337 ETRVTEYQQ 345 R +Y + Sbjct: 305 AKRPVDYTK 313 >gi|325963521|ref|YP_004241427.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323469608|gb|ADX73293.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 324 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 59/267 (22%), Positives = 110/267 (41%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W N LT E+ + R +++ +++ Sbjct: 32 VNNFWLPEKVPLSNDVQSW---NTLTPAEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L + E F E ++ KA + Y Q Sbjct: 89 TPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWSTENENLQKKAQIVMDYYQ 148 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 149 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 193 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + G ++ +P +E + + +L E E+ Y H+ VG Sbjct: 194 IRDEAVHGYYIGYKFQRGLEAVSPER-RQEIKDYTFELLFELYENEVQYTHDLYDG--VG 250 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 L A ++++ + AN+ +G E +F Sbjct: 251 L-AEDVKKFLHYNANKALMNLGYEAMF 276 >gi|315149360|gb|EFT93376.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0012] Length = 321 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 64/280 (22%), Positives = 116/280 (41%), Gaps = 28/280 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L++ E+ + G +++ + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSNLEKTTVGYVFGGLTLLDTVQSESGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 DQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIDDIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + GT + + V E FY+GF L NK+ Sbjct: 127 NKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I Q+ E P + + +L+E E Y E Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEE 238 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 +G + ++++ AN+ +G++PLF T N Sbjct: 239 LYDD--LGW-TEEVKTFLRYNANKALMNLGMDPLFADTAN 275 >gi|282599256|ref|YP_003358568.1| NrdB ribonucleotide reductase subunit beta [Shigella phage phiSboM-AG3] gi|226973562|gb|ACO94315.1| NrdB ribonucleotide reductase subunit beta [Shigella phage phiSboM-AG3] Length = 367 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 74/306 (24%), Positives = 128/306 (41%), Gaps = 32/306 (10%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y + W P EV + D A + + LT E+ + + NL +S+ A Sbjct: 43 YEKGLSQFWRPEEVDITKDKADYAT---LTPAEKRIYESNLKRQTMLDSIQGAAPFEAFG 99 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW---- 161 S PE + +L +EA+HS ++ +I+ + D G +F+ +V I A+ Sbjct: 100 PWASTPEMQFAVLEWTRQEAIHSLSYTHILRNTVNDPGIVFDHVLDVAEIVDCAHQISTH 159 Query: 162 ---ALQYT-QTLSSPSFTT-GTKDADQEFLQDLFV--------FYVVFEGMWFYTGFAQI 208 ++Y+ ++ +FT +A + F + LF FYV F W +T F + Sbjct: 160 YDDMVRYSGMRMAGRAFTREDIMNAKRAFWRALFAANTLEGIRFYVSFACSWAFTQFQK- 218 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP--HLWTKEFQQKSRTMLH 266 KM G A+ + I RDE HL ++N++ +P + +E + + M Sbjct: 219 -------KMEGNAKIIRQIARDEQDHLILTQTLLNRLPGMDPDFEIIREELRGEMTQMFL 271 Query: 267 EATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMS 324 + E +A G +GLNA + ++ R IG P E P PW++ Sbjct: 272 DVGNQEKQWADYLFQDGSMLGLNAKILHHMVDWLLTHRMGAIGHPYPGEPRKECPVPWIN 331 Query: 325 EVIDLK 330 E ++ K Sbjct: 332 EWLNNK 337 >gi|51518029|ref|YP_067954.1| BaRF1 [Macacine herpesvirus 4] gi|18025480|gb|AAK95424.1| BaRF1 [Macacine herpesvirus 4] Length = 302 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 113/299 (37%), Gaps = 34/299 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W + + D K N + + K F A +E LV NI + + Sbjct: 23 NRWFAAHIVLTKDCGCLKLLN---ERDLEFYKFLFTFLAMAEKLVNFNID-ELVTSFESH 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y Q E VH T+ I+ L + N Y E ++ AK +W Sbjct: 79 DIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADGALQAKISWLRD--- 135 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 K A L + + +++ EG++F + F I L M G+ YI Sbjct: 136 -----------KVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGVCLANNYI 184 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE LH + N + + Q+ RT A +E A+ E G + Sbjct: 185 SRDELLHTRAASLLYNSMTAPADRPGAQWIQELFRT----AVEVETAFI-EARGWGVTLV 239 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + Q+++ A+R IGL PL+ + P +M+ + K+ NFFE +Y Sbjct: 240 DVQAIRQFLEATADRILGDIGLPPLYGTPPPRDCPLTYMTSI----KQTNFFEQESADY 294 >gi|24379140|ref|NP_721095.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus mutans UA159] gi|290580850|ref|YP_003485242.1| putative ribonucleotide reductase small subunit [Streptococcus mutans NN2025] gi|24377045|gb|AAN58401.1|AE014910_5 putative ribonucleotide reductase, small subunit [Streptococcus mutans UA159] gi|254997749|dbj|BAH88350.1| putative ribonucleotide reductase small subunit [Streptococcus mutans NN2025] Length = 319 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 123/282 (43%), Gaps = 32/282 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAAEKDLVGKVFGGLTLLDTMQSQSGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N E+ I Sbjct: 75 EAIRGDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEGIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G +A Q+ + F+ E FY+GF L NK+ Sbjct: 127 NEYLQKKAKIINEIYENG--NALQKKVASTFL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +AE + I+RDES+H G + + ++ L ++E Q + R +++ LL Y +E Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQSEFRDWMYD--LLYQLYENEE 233 Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYTEN 318 + + E+ M F+ AN+ +G +PLF T N Sbjct: 234 LYTQTLYDPVGWTEEVMTFLRYNANKALMNLGQDPLFPDTAN 275 >gi|56808544|ref|ZP_00366279.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus pyogenes M49 591] gi|209559615|ref|YP_002286087.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes NZ131] gi|209540816|gb|ACI61392.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Streptococcus pyogenes NZ131] Length = 319 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 46/289 (15%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSLQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G DA Q+ + ++ E FY+GF L NK+ Sbjct: 127 NEFLQKKAQIINEIYEHG--DALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270 +AE + I+RDES+H G + + + + EN W + +Q + TL Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQLYENEEKYTKTL 239 Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + + + E M ++++ AN+ +G +PLF T N Sbjct: 240 YDGVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275 >gi|122892861|gb|ABM67449.1| NrdB [Xanthomonas campestris] gi|122892863|gb|ABM67450.1| NrdB [Xanthomonas campestris] gi|122892865|gb|ABM67451.1| NrdB [Xanthomonas campestris] gi|122892867|gb|ABM67452.1| NrdB [Xanthomonas campestris] gi|122892869|gb|ABM67453.1| NrdB [Xanthomonas campestris] gi|122892871|gb|ABM67454.1| NrdB [Xanthomonas campestris] gi|122892873|gb|ABM67455.1| NrdB [Xanthomonas campestris] gi|122892875|gb|ABM67456.1| NrdB [Xanthomonas campestris] gi|122892877|gb|ABM67457.1| NrdB [Xanthomonas campestris] gi|122892879|gb|ABM67458.1| NrdB [Xanthomonas campestris] gi|122892881|gb|ABM67459.1| NrdB [Xanthomonas campestris] gi|122892883|gb|ABM67460.1| NrdB [Xanthomonas campestris] gi|122892885|gb|ABM67461.1| NrdB [Xanthomonas campestris] gi|122892887|gb|ABM67462.1| NrdB [Xanthomonas campestris] gi|122892889|gb|ABM67463.1| NrdB [Xanthomonas campestris] gi|122892891|gb|ABM67464.1| NrdB [Xanthomonas campestris] gi|122892893|gb|ABM67465.1| NrdB [Xanthomonas campestris] gi|122892895|gb|ABM67466.1| NrdB [Xanthomonas campestris] gi|122892897|gb|ABM67467.1| NrdB [Xanthomonas campestris] gi|122892899|gb|ABM67468.1| NrdB [Xanthomonas campestris] gi|122892901|gb|ABM67469.1| NrdB [Xanthomonas campestris] gi|122892903|gb|ABM67470.1| NrdB [Xanthomonas campestris] gi|122892905|gb|ABM67471.1| NrdB [Xanthomonas campestris] gi|122892907|gb|ABM67472.1| NrdB [Xanthomonas campestris] gi|122892909|gb|ABM67473.1| NrdB [Xanthomonas campestris] gi|122892911|gb|ABM67474.1| NrdB [Xanthomonas campestris] gi|122892913|gb|ABM67475.1| NrdB [Xanthomonas campestris] gi|122892915|gb|ABM67476.1| NrdB [Xanthomonas campestris] gi|122892917|gb|ABM67477.1| NrdB [Xanthomonas campestris] gi|122892919|gb|ABM67478.1| NrdB [Xanthomonas campestris] gi|122892921|gb|ABM67479.1| NrdB [Xanthomonas campestris] gi|122892923|gb|ABM67480.1| NrdB [Xanthomonas campestris] gi|122892925|gb|ABM67481.1| NrdB [Xanthomonas campestris] gi|122892927|gb|ABM67482.1| NrdB [Xanthomonas campestris] gi|122892929|gb|ABM67483.1| NrdB [Xanthomonas campestris] gi|122892931|gb|ABM67484.1| NrdB [Xanthomonas campestris] gi|122892933|gb|ABM67485.1| NrdB [Xanthomonas campestris] gi|122892935|gb|ABM67486.1| NrdB [Xanthomonas campestris] gi|122892937|gb|ABM67487.1| NrdB [Xanthomonas campestris] Length = 175 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 14/184 (7%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P EV M+ D + N L+ E+ +G A+ +S + + ++++P Sbjct: 1 PDEVDMKGD---ARQYNELSAREKNAYDSIIGLLATLDS-PQTRFIYNVAEYITDPAAHA 56 Query: 116 YLLRQAFEEAVHSHTFQYIITSL-GL-DEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 +E +H+ ++ Y++ S+ GL D+ +F + R P+I K N + + Sbjct: 57 NAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPTII-KRNAPIM-------GA 108 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 + +D E L + + EG+ FY+GFA +L R N+M G + +I RDE Sbjct: 109 YDDFMRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELA 168 Query: 234 HLNF 237 H F Sbjct: 169 HSKF 172 >gi|291290450|dbj|BAI83245.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage AR1] Length = 392 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 69/311 (22%), Positives = 130/311 (41%), Gaps = 39/311 (12%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L ++ + NL + + +S+ + +S+P Sbjct: 48 WRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ F E +HS ++ +I+ +L D ++F+ +I +A + Y L Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKT 164 Query: 173 SFTTGTK---------DADQEFLQD----------------LFVFYVV--FEGMWFYTGF 205 + K +AD++ ++D +V+ E + FY F Sbjct: 165 RYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSF 224 Query: 206 AQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQK 260 A + + + M G A+ ++I RDE LHL +I Q++ + W K E +Q+ Sbjct: 225 ACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDQWVKIAQECEQE 284 Query: 261 SRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TE 317 + + E E +A G V GLN S ++ ++ R Q GL P+ + Sbjct: 285 AVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVK 344 Query: 318 NPFPWMSEVID 328 +P+PW+ E ++ Sbjct: 345 HPYPWIREYLN 355 >gi|228861541|ref|YP_002854562.1| ribonucleotide reductase B subunit [Enterobacteria phage RB14] gi|227438557|gb|ACP30870.1| ribonucleotide reductase B subunit [Enterobacteria phage RB14] Length = 392 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 69/311 (22%), Positives = 130/311 (41%), Gaps = 39/311 (12%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L ++ + NL + + +S+ + +S+P Sbjct: 48 WRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ F E +HS ++ +I+ +L D ++F+ +I +A + Y L Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKT 164 Query: 173 SFTTGTK---------DADQEFLQD----------------LFVFYVV--FEGMWFYTGF 205 + K +AD++ ++D +V+ E + FY F Sbjct: 165 RYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSF 224 Query: 206 AQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQK 260 A + + + M G A+ ++I RDE LHL +I Q++ + W K E +Q+ Sbjct: 225 ACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDQWVKIAQECEQE 284 Query: 261 SRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TE 317 + + E E +A G V GLN S ++ ++ R Q GL P+ + Sbjct: 285 AVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVK 344 Query: 318 NPFPWMSEVID 328 +P+PW+ E ++ Sbjct: 345 HPYPWIREYLN 355 >gi|291295355|ref|YP_003506753.1| ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279] gi|290470314|gb|ADD27733.1| Ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279] Length = 429 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 66/295 (22%), Positives = 125/295 (42%), Gaps = 23/295 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ E+P+ DD W + L+ +E+ + ++ L +++ + + + +H+ + + Sbjct: 33 WVDEEIPLADDKLTWMT---LSREEQRVYEQVLAGLTLLDTVQGSVGMPLLSQHIESLQA 89 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + + E +H+ ++ I ++L E ELF+ R P LQ QT Sbjct: 90 KAVMGFMGAMEHMHAKSYSSIFSTLCTSERIAELFDWVRSEP--------VLQEKQTFVH 141 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + G +D +L V+ E FY+GF L L +M E I+RDE Sbjct: 142 RRYL-GVQDEQSLYLG--LAASVLLESFLFYSGFFYPLLLAGQGRMTSSGEIINLIIRDE 198 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 S+H + + ++ P K ++ +ML LE Y+ M +GL + Sbjct: 199 SIHGVYVGLLAQEVYAGLPEAQQKTAREGVYSMLEHLAGLEERYSR--MLYTPLGLTE-A 255 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343 + ++ A++ +GLEP F + NP ++ + K +FF T+ Y Sbjct: 256 VVTFSRYNADKALMNLGLEPYFGVSAEAVNPV-VLAGLSTHTKNHDFFSTKGNGY 309 >gi|32709423|gb|AAP86730.1| NrdB [Enterobacteria phage RB27] Length = 392 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 69/311 (22%), Positives = 130/311 (41%), Gaps = 39/311 (12%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L ++ + NL + + +S+ + +S+P Sbjct: 48 WRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-NWALQYTQTLSSP 172 ++ F E +HS ++ +I+ +L D ++F+ +I +A + Y L Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKT 164 Query: 173 SFTTGTK---------DADQEFLQD----------------LFVFYVV--FEGMWFYTGF 205 + K +AD++ ++D +V+ E + FY F Sbjct: 165 RYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSF 224 Query: 206 AQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQK 260 A + + + M G A+ ++I RDE LHL +I Q++ + W K E +Q+ Sbjct: 225 ACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDQWVKIAQECEQE 284 Query: 261 SRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TE 317 + + E E +A G V GLN S ++ ++ R Q GL P+ + Sbjct: 285 AVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVK 344 Query: 318 NPFPWMSEVID 328 +P+PW+ E ++ Sbjct: 345 HPYPWIREYLN 355 >gi|170587050|ref|XP_001898292.1| ribonucleotide reductase 2 [Brugia malayi] gi|158594687|gb|EDP33271.1| ribonucleotide reductase 2, putative [Brugia malayi] Length = 288 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ W+ Y A + W EV + D W++ L D ER I R L FFA+S+ Sbjct: 58 IFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDWEN---LNDGERHFISRVLAFFAASD 114 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 +V N+V + + PE R + Q E +HS + +I + D+ + Sbjct: 115 GIVNENLVNRFSQEVQVPEARFFYGFQIMIENIHSEMYSKMIDTYIRDQKQ 165 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 +K +M + + Y E +P +G+N QY++++A+ ++ ++ +++N Sbjct: 186 KKFTSMFNACIDAKQEYLTEALPVDLIGINCKLMCQYIEYVADHLLTELHCAKIY-HSDN 244 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 PF +M E I ++ + NFFE RV+EYQ+ L Sbjct: 245 PFDFM-ERISIEAKTNFFEKRVSEYQKAGVL 274 >gi|301331892|gb|ADK70922.1| U27.5 [Elephant endotheliotropic herpesvirus 2] Length = 301 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 72/305 (23%), Positives = 126/305 (41%), Gaps = 25/305 (8%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y + N W+ ++ +D +K L + + K F +E LV N+ I Sbjct: 17 YRTVTENRWLEGQISFLND---YKHILLLDEKTKEYYKFIFCFLGMAEHLVNFNLFDMIE 73 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 R L +P+ Y + Q E VH+ T++ I+ ++ D E +I A++ L+ Sbjct: 74 R-LEDPDVIHYYIEQMSIECVHARTYRRIL-NIFYDNDE--------KAIMCAADFYLKD 123 Query: 166 TQTLSSPSFTTGT-KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 L SF T ++ D L + ++ EG++F + F I L R G E Sbjct: 124 PALLKKISFLEKTIRECDT--LGKKIIVLILIEGIFFLSSFVSIAML-RTIGFDGTTEAN 180 Query: 225 QYIMRDESLHLNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 YI RDES+H + +N + EN ++ + S + E + G Sbjct: 181 TYICRDESIHTTAATKLYLNYVTPENRPSYSFIYSLFSDVIRIEKEFI------NAKVDG 234 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 +N ++ +A++ +I ++PL+ T+ P + ++K FFE R TEY Sbjct: 235 VGLINKKVIFDTLEGVADQLLARINMQPLYA-TQIPNNCPLPLSTIEKNVCFFEKRNTEY 293 Query: 344 QQGAE 348 E Sbjct: 294 CTRLE 298 >gi|119961248|ref|YP_948075.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter aurescens TC1] gi|119948107|gb|ABM07018.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter aurescens TC1] Length = 324 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/274 (21%), Positives = 115/274 (41%), Gaps = 39/274 (14%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W + LT DE+ + R +++ +++ Sbjct: 32 VNNFWLPEKVPLSNDVQSWHT---LTPDEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166 P AF E+VH+ ++ I ++L E+ + +R E ++ KA + Y Sbjct: 89 TPHEEAVYTNIAFMESVHAKSYSSIFSTL-CSTKEIDDAFRWSLENENLQKKAQIVMDYY 147 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 Q D + V + E FY+GF + K+ A+ + Sbjct: 148 Q-------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRL 192 Query: 227 IMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 I+RDE++H + G++ +++ + +E + + +L E E+ Y H+ Sbjct: 193 IIRDEAVHGYYIGYKFQKGLEKVSEAR-------KQEIKDYTFELLFELYENEVQYTHDL 245 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VGL A ++++ + AN+ +G E +F Sbjct: 246 YDG--VGL-AEDVKKFLHYNANKALMNLGYEAMF 276 >gi|306829459|ref|ZP_07462649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus mitis ATCC 6249] gi|304428545|gb|EFM31635.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus mitis ATCC 6249] Length = 320 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT + V V E FY+GF L NK+ Sbjct: 127 NPYLQRKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|262283137|ref|ZP_06060904.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sp. 2_1_36FAA] gi|262261389|gb|EEY80088.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sp. 2_1_36FAA] Length = 319 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159 A+ + + F E+VH+ ++ I ++L N E+ I A Sbjct: 75 DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIINEIYLNGTALEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 ET+ G VG + ++++ AN+ +G +PLF Sbjct: 236 TETLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|331266449|ref|YP_004326079.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus oralis Uo5] gi|326683121|emb|CBZ00739.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus oralis Uo5] Length = 320 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT + V V E FY+GF L NK+ Sbjct: 127 NPYLQRKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|7330057|gb|AAF60046.1|AF210726_67 small ribonuclease reductase [Rhesus monkey rhadinovirus H26-95] Length = 304 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 69/308 (22%), Positives = 119/308 (38%), Gaps = 53/308 (17%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN-------LGFFASSESLVANNIVLAI 104 N W P+++ + +D +D+ RL+ + F +ESLV NI + Sbjct: 26 NRWFPSQISLHED----------SDEVRLLSPTDREFYQFLFTFLGMAESLVNFNIE-DL 74 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREV---PSITAKAN 160 + SN + Y Q E +H + I+ G + G+L +++ ++ K + Sbjct: 75 VKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDLMIYAKKIVEDATLAKKID 134 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 W + T A++ L ++V EG++F + F I M G+ Sbjct: 135 WLHSRVRK--------ATTRAEKVLL------FLVIEGIYFISSFYSIGLFRLRGIMRGV 180 Query: 221 AEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 YI RDE LH + N + + E+P + + EA +E + Sbjct: 181 CLANDYISRDELLHTRAASLLYNTMISRDESPSV------AYIHGLFREAVEIETLFI-R 233 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNF 335 + + +N EQ++Q A+R I + PLF P + S K NF Sbjct: 234 SKSRDVTMVNVGDIEQFLQATADRILKSINIPPLFGARPPNACPLSYTS-----AKSVNF 288 Query: 336 FETRVTEY 343 FE +EY Sbjct: 289 FERDNSEY 296 >gi|315445193|ref|YP_004078072.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. Spyr1] gi|315263496|gb|ADU00238.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. Spyr1] Length = 320 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/322 (21%), Positives = 132/322 (40%), Gaps = 33/322 (10%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +D+ W N LT E+ + R Sbjct: 13 NRLQDDKDAEVWDRL---TGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTL 66 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P AF E+VH+ ++ I ++L E+ + +R Sbjct: 67 LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTSEIDDAFRW 125 Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 E P++ KA +QY + D+ + V + E FY+GF Sbjct: 126 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 170 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + G + + + +E + + +L E Sbjct: 171 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALADDAT-RQELKDYTYELLFE 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + VGL ++++++ AN+ +G E LF E NP + Sbjct: 230 LYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + + +FF + Y G Sbjct: 287 LSPNADENHDFFSGSGSSYVIG 308 >gi|145224865|ref|YP_001135543.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium gilvum PYR-GCK] gi|145217351|gb|ABP46755.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium gilvum PYR-GCK] Length = 320 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/322 (21%), Positives = 132/322 (40%), Gaps = 33/322 (10%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +D+ W N LT E+ + R Sbjct: 13 NRLQDDKDAEVWDRL---TGNFWLPEKVPVSNDIPSW---NTLTAHEKQLTMRVFTGLTL 66 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P AF E+VH+ ++ I ++L E+ + +R Sbjct: 67 LDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTL-CSTSEIDDAFRW 125 Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 E P++ KA +QY + D+ + V + E FY+GF Sbjct: 126 SEENPNLQRKAEIVMQYYK-------------GDEPLKRK--VASTLLESFLFYSGFYLP 170 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + G + + + +E + + +L E Sbjct: 171 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALADDAT-RQELKDYTYELLFE 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + VGL ++++++ AN+ +G E LF E NP + Sbjct: 230 LYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + + +FF + Y G Sbjct: 287 LSPNADENHDFFSGSGSSYVIG 308 >gi|18653874|ref|NP_570808.1| small ribonucleotide reductase [Macacine herpesvirus 5] gi|4494972|gb|AAD21394.1| small ribonucleotide reductase [Macaca mulatta rhadinovirus 17577] Length = 314 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 69/308 (22%), Positives = 119/308 (38%), Gaps = 53/308 (17%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN-------LGFFASSESLVANNIVLAI 104 N W P+++ + +D +D+ RL+ + F +ESLV NI + Sbjct: 36 NRWFPSQISLHED----------SDEVRLLSPTDREFYQFLFTFLGMAESLVNFNIE-DL 84 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREV---PSITAKAN 160 + SN + Y Q E +H + I+ G + G+L +++ ++ K + Sbjct: 85 VKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDLMIYAKKIVEDATLAKKID 144 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 W + T A++ L ++V EG++F + F I M G+ Sbjct: 145 WLHSRVRK--------ATTRAEKVLL------FLVIEGIYFISSFYSIGLFRLRGIMRGV 190 Query: 221 AEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 YI RDE LH + N + + E+P + + EA +E + Sbjct: 191 CLANDYISRDELLHTRAASLLYNTMISRDESPSV------AYIHGLFREAVEIETLFI-R 243 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNF 335 + + +N EQ++Q A+R I + PLF P + S K NF Sbjct: 244 SKSRDVTMVNVGDIEQFLQATADRILKSINIPPLFGARPPNACPLSYTS-----AKSVNF 298 Query: 336 FETRVTEY 343 FE +EY Sbjct: 299 FERDNSEY 306 >gi|9630287|ref|NP_046714.1| hypothetical protein SPBc2p162 [Bacillus phage SPBc2] gi|50812253|ref|NP_389886.2| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|75090792|sp|O64174|BNRDF_BPSPC RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|81637506|sp|O30601|YOSP_BACSU RecName: Full=SPBc2 prophage-derived ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|2522310|gb|AAB92486.1| YojQ/S [Bacillus subtilis subsp. subtilis str. 168] gi|3025640|gb|AAC13135.1| unknown [Bacillus phage SPbeta] gi|32468776|emb|CAB13896.2| SPbeta phage ribonucleoside-diphosphate reductase, beta subunit [Bacillus subtilis subsp. subtilis str. 168] Length = 329 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 69/299 (23%), Positives = 125/299 (41%), Gaps = 22/299 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + DL WK D + + L + + N + + H+ + Sbjct: 30 WLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQ---GNTGMPIVAEHVDGHQR 86 Query: 114 RQYLLRQAF-EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170 + L A E AVH+ ++ I +L E E+F + + KA + +T+ Sbjct: 87 KAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKKARTIVSVYKTI- 145 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 K D+ L V V E FY+GF L K++ E I+RD Sbjct: 146 --------KKNDEISLFKGMVASVFLESFLFYSGFYYPLYFYGQGKLMQSGEIINLIIRD 197 Query: 231 ESLH-LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 E++H + G+ K + P KE + +L E E+ Y + + VGL A Sbjct: 198 EAIHGVYVGLLAQEIYKKQTPQK-QKELYAWALNLLQELYENELEYTEDVYDQ--VGL-A 253 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGA 347 P ++++++ AN+ + +G + F+ E+ P + ++ K K +FF T+ Y++ Sbjct: 254 PDVKKFIRYNANKALNNLGFDHWFE-EEDVNPIVINGLNTKTKSHDFFSTKGNGYKKAT 311 >gi|319947340|ref|ZP_08021573.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus australis ATCC 700641] gi|319746582|gb|EFV98842.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus australis ATCC 700641] Length = 319 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT + V V E FY+GF L NK+ Sbjct: 127 NPFLQKKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|315641368|ref|ZP_07896443.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus italicus DSM 15952] gi|315482861|gb|EFU73382.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus italicus DSM 15952] Length = 321 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 28/280 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ G ++L + + + Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSEPEKQLVGHVFGGLTLLDTLQSESGI 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKA 159 + + P L F E+VH+ ++ I ++L + E+F P + AKA Sbjct: 76 DQLRKDARTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFEWTNTNPYLQAKA 135 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 + + GT + + V E FY+GF L NK+ Sbjct: 136 EKI--------NEIYKHGTPLQKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 180 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I Q+ + P E + +L E E Y E Sbjct: 181 VAEIIKLIIRDESVHGTY-IGYKFQLGFQALPEAEQAELKDWMYGLLFELYENEENYTDE 239 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 G +G A + ++++ AN+ +G +PLF + N Sbjct: 240 LY--GEIGW-AEEVKTFLRYNANKALMNMGQDPLFPDSAN 276 >gi|300776394|ref|ZP_07086252.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC 35910] gi|300501904|gb|EFK33044.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC 35910] Length = 371 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 70/310 (22%), Positives = 133/310 (42%), Gaps = 25/310 (8%) Query: 45 KYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 +++ A N + W+ +EV D+ + S+ L E+ +K L A E V Sbjct: 67 QFVEAINKSFWVHSEVDFTADVQDFHSQ--LEPHEKHAVKNALLAIAQIEVSV-KTFWGN 123 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW-- 161 +Y HL PE A E HS + ++ LG ++ E N+ E+P++ + + Sbjct: 124 LYNHLPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYND-EFLNVI-EIPAVKGRIEFLG 181 Query: 162 -ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVG 219 AL++ + ++P +E++ L +F ++ E + ++ FA ILS R M Sbjct: 182 NALKHANS-ATP----------KEYVSALLLFSILVENVSLFSQFAIILSFTRFKGFMKN 230 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 ++ + DE +H N GI +IN+I+ E P L T + T++ E+ E Sbjct: 231 VSNIIAWTSVDEQIHANAGIYLINKIREEQPDLLTDSDIEDIYTLVDESIAREGDILSWI 290 Query: 280 MPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNF 335 G + ++ +M++ + +I ++ + T P W E + +F Sbjct: 291 FELGEIDNVSKEDLLNFMKYRVDDSLKKINMKTRYNITPEQYRPMVWFEEEVFANSLDDF 350 Query: 336 FETRVTEYQQ 345 F R +Y + Sbjct: 351 FAKRPVDYTK 360 >gi|296876816|ref|ZP_06900864.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 15912] gi|296432318|gb|EFH18117.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 15912] Length = 321 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 23 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 76 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 77 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNT 128 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT + V V E FY+GF L NK+ Sbjct: 129 NPFLQKKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 181 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 182 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 237 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 238 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 272 >gi|312867164|ref|ZP_07727374.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parasanguinis F0405] gi|311097293|gb|EFQ55527.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parasanguinis F0405] Length = 321 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 23 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 76 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 77 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNT 128 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT + V V E FY+GF L NK+ Sbjct: 129 NPFLQRKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 181 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 182 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 237 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 238 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 272 >gi|330858746|ref|YP_004415121.1| putative ribonucleotide reductase B subunit [Shigella phage Shfl2] gi|327397680|gb|AEA73182.1| putative ribonucleotide reductase B subunit [Shigella phage Shfl2] Length = 389 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 70/308 (22%), Positives = 128/308 (41%), Gaps = 36/308 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L ++ + NL + + +S+ + +S+P Sbjct: 48 WRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSIT 156 ++ F E +HS ++ +I+ +L D ++F+ Y +V T Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMKRAESIGRYYDDVLVKT 164 Query: 157 AKANWALQYTQTLSSPSF--------TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 + A++ + + S F TK A + L E + FY FA Sbjct: 165 REYQNAVEDYEGILSEGFRKEELGKVVECTKRALMKSLYLCLHVINALEAIRFYVSFACT 224 Query: 209 LSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQKSRT 263 + + + M G A+ ++I RDE LHL +I Q+++ + W K E +Q++ Sbjct: 225 FNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVD 284 Query: 264 MLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPF 320 + E E +A G V GLN S ++ ++ R Q GL P+ ++P+ Sbjct: 285 IFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPY 344 Query: 321 PWMSEVID 328 PW+ E ++ Sbjct: 345 PWIREYLN 352 >gi|227876446|ref|ZP_03994558.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35243] gi|269976014|ref|ZP_06183018.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] gi|306817405|ref|ZP_07451150.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35239] gi|307700420|ref|ZP_07637459.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris FB024-16] gi|227842987|gb|EEJ53184.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35243] gi|269935842|gb|EEZ92372.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] gi|304649846|gb|EFM47126.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35239] gi|307614405|gb|EFN93635.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris FB024-16] Length = 322 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/303 (22%), Positives = 125/303 (41%), Gaps = 28/303 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ WK+ N DE+LM R +++ +++ Sbjct: 30 TGNFWLPEKIPLSNDIPSWKTLNA---DEKLMTNRVFTGLTLLDTIQGTVGAVSLIPDSR 86 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L E E F + KA+ L Y Sbjct: 87 TPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFQWSENNEFLQKKAHIVLDYYH 146 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 DA++ V + E FY+GF + K+ A+ + I Sbjct: 147 ----------GNDAEKR-----KVASTMLESFLFYSGFYAPMYWSAHAKLTNTADLIRLI 191 Query: 228 MRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + I Q+ + E+ +E + + ++L + E+ Y ET+ +G Sbjct: 192 IRDEAVH-GYYIGYKFQVAMRESSSSRQEELRDYTYSLLTDLYDNEVLYT-ETLYDT-LG 248 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343 L ++++ + AN+ +G E LF E NP + ++ +FF + Y Sbjct: 249 L-TEDVKKFLHYNANKALMNLGYEALFPPEEIDVNPAILAALSPAAEENHDFFSGSGSSY 307 Query: 344 QQG 346 G Sbjct: 308 TIG 310 >gi|322387902|ref|ZP_08061509.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus infantis ATCC 700779] gi|321141175|gb|EFX36673.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus infantis ATCC 700779] Length = 320 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 NALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKTEIEEIFEWTDT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAQIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKDWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|15842613|ref|NP_337650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CDC1551] gi|31794226|ref|NP_856719.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis AF2122/97] gi|57117051|ref|YP_177921.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Rv] gi|121638932|ref|YP_979156.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662901|ref|YP_001284424.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|148824239|ref|YP_001288993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis F11] gi|167969649|ref|ZP_02551926.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|215405040|ref|ZP_03417221.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|215412903|ref|ZP_03421607.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|215428496|ref|ZP_03426415.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T92] gi|215432000|ref|ZP_03429919.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|215447324|ref|ZP_03434076.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|218754813|ref|ZP_03533609.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis GM 1503] gi|219559083|ref|ZP_03538159.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T17] gi|224991424|ref|YP_002646113.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253797854|ref|YP_003030855.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 1435] gi|254233678|ref|ZP_04927003.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis C] gi|254365678|ref|ZP_04981723.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis str. Haarlem] gi|254552123|ref|ZP_05142570.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188080|ref|ZP_05765554.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CPHL_A] gi|260202186|ref|ZP_05769677.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T46] gi|260206381|ref|ZP_05773872.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis K85] gi|289444611|ref|ZP_06434355.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289448726|ref|ZP_06438470.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CPHL_A] gi|289553161|ref|ZP_06442371.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 605] gi|289571250|ref|ZP_06451477.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T17] gi|289575758|ref|ZP_06455985.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis K85] gi|289746856|ref|ZP_06506234.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289751720|ref|ZP_06511098.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T92] gi|289755164|ref|ZP_06514542.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289759173|ref|ZP_06518551.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|289763226|ref|ZP_06522604.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis GM 1503] gi|294993448|ref|ZP_06799139.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 210] gi|297635679|ref|ZP_06953459.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN 4207] gi|297732677|ref|ZP_06961795.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN R506] gi|298526518|ref|ZP_07013927.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|306777354|ref|ZP_07415691.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu001] gi|306781258|ref|ZP_07419595.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu002] gi|306785899|ref|ZP_07424221.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu003] gi|306790253|ref|ZP_07428575.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu004] gi|306794748|ref|ZP_07433050.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu005] gi|306798990|ref|ZP_07437292.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu006] gi|306804833|ref|ZP_07441501.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu008] gi|306809026|ref|ZP_07445694.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu007] gi|306969126|ref|ZP_07481787.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu009] gi|306973470|ref|ZP_07486131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu010] gi|307081181|ref|ZP_07490351.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu011] gi|307085780|ref|ZP_07494893.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu012] gi|313660009|ref|ZP_07816889.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN V2475] gi|81671996|sp|Q50549|RIR2B_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta nrdF2; AltName: Full=Ribonucleoside-diphosphate reductase nrdF2; AltName: Full=Ribonucleotide reductase R2-2 small subunit gi|1395209|gb|AAB81406.1| ribonucleotide reductase R2-2 small subunit [Mycobacterium tuberculosis] gi|13882928|gb|AAK47464.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Mycobacterium tuberculosis CDC1551] gi|31619821|emb|CAD96761.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium bovis AF2122/97] gi|41352780|emb|CAE55544.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|121494580|emb|CAL73061.1| Ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599207|gb|EAY58311.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis C] gi|134151191|gb|EBA43236.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis str. Haarlem] gi|148507053|gb|ABQ74862.1| ribonucleoside-diphosphate reductase subunit beta NrdF2 [Mycobacterium tuberculosis H37Ra] gi|148722766|gb|ABR07391.1| ribonucleoside-diphosphate reductase beta subunit nrdF2 [Mycobacterium tuberculosis F11] gi|224774539|dbj|BAH27345.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253319357|gb|ACT23960.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 1435] gi|289417530|gb|EFD14770.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289421684|gb|EFD18885.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CPHL_A] gi|289437793|gb|EFD20286.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 605] gi|289540189|gb|EFD44767.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis K85] gi|289545004|gb|EFD48652.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T17] gi|289687384|gb|EFD54872.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289692307|gb|EFD59736.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T92] gi|289695751|gb|EFD63180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289710732|gb|EFD74748.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis GM 1503] gi|289714737|gb|EFD78749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|298496312|gb|EFI31606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|308214246|gb|EFO73645.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu001] gi|308325901|gb|EFP14752.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu002] gi|308329423|gb|EFP18274.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu003] gi|308333268|gb|EFP22119.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu004] gi|308336923|gb|EFP25774.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu005] gi|308340739|gb|EFP29590.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu006] gi|308344606|gb|EFP33457.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu007] gi|308348554|gb|EFP37405.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu008] gi|308353280|gb|EFP42131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu009] gi|308357113|gb|EFP45964.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu010] gi|308361065|gb|EFP49916.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu011] gi|308364701|gb|EFP53552.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu012] gi|323718280|gb|EGB27458.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CDC1551A] gi|326902729|gb|EGE49662.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis W-148] gi|328457631|gb|AEB03054.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 4207] Length = 324 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/328 (20%), Positives = 133/328 (40%), Gaps = 45/328 (13%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 17 NRLQDEKDAEVWDRL---TGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTM 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P L AF E+VH+ ++ I ++L E+ + +R Sbjct: 71 LDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRW 129 Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 E ++ KA LQY + D+ + V + E FY+GF Sbjct: 130 SEENRNLQRKAEIVLQYYR-------------GDEPLKRK--VASTLLESFLFYSGFYLP 174 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKS 261 + K+ A+ + I+RDE++H + G+ +++ + E + + Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVT-------RAELKDYT 227 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318 +L E E+ Y + + VGL ++++++ AN+ +G E LF E N Sbjct: 228 YELLFELYDNEVEYTQDLYDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVN 284 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346 P + + + +FF + Y G Sbjct: 285 PAILSALSPNADENHDFFSGSGSSYVIG 312 >gi|320095222|ref|ZP_08026924.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 178 str. F0338] gi|319977850|gb|EFW09491.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 178 str. F0338] Length = 319 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 67/302 (22%), Positives = 126/302 (41%), Gaps = 26/302 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL W++ L DE+ M R ++L +++ Sbjct: 27 TGNFWLPEKVPLSNDLPSWQT---LNKDEQTMTNRVFTGLTLLDTLQGTVGAVSLIPDAR 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P AF E+VH+ ++ I ++L L E+ +R + N ALQ + Sbjct: 84 TPHEEAVYTNIAFMESVHAKSYSSIFSTL-LSTEEINESFR-----WSNENEALQRKAQI 137 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 S+ G DA++ V + E FY+GF + K+ A+ + I+R Sbjct: 138 IK-SYYDG-DDAEKR-----KVASTMLESFLFYSGFYAPMYWSAHAKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287 DE++H + I Q+ + E+ + + + ++L+E E Y + P G Sbjct: 191 DEAVH-GYYIGYKYQLAVGESTQERRDDLKDYTYSLLYELYENEEQYTEDLYDPLGLT-- 247 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344 ++++++ AN+ +G E LF + NP + + + +FF + Y Sbjct: 248 --EDVKKFLRYNANKALMNLGYEALFPHDATDVNPAILAALSPNADENHDFFSGSGSSYV 305 Query: 345 QG 346 G Sbjct: 306 MG 307 >gi|239636654|ref|ZP_04677656.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus warneri L37603] gi|239598009|gb|EEQ80504.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus warneri L37603] gi|330683860|gb|EGG95634.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU121] Length = 324 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/296 (23%), Positives = 127/296 (42%), Gaps = 22/296 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ L++ E+ K+ L ++ A++ + I H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LSEAEKNTFKKALAGLTGLDTHQADDGMPLIMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYR-EVPSITAKANWALQYTQTLS 170 + A E +H+ ++ +I T+L + L + + E P + K++ ++ L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDKIIENYHKLW 141 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + DQ + V V E FY+GF L L KM E + I+ D Sbjct: 142 GKEASI----FDQYIAR---VSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLD 194 Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 ES+H F G+D ++ E + Q+ +L E E++Y H + +GL A Sbjct: 195 ESIHGVFTGLDA-QSLRNELSESEKQRADQEMYKLLKELYDNEVSYTH--LLYDDIGL-A 250 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTEY 343 Y+++ N+ +G EP F+ E F P + +D K +FF + Y Sbjct: 251 EDVLNYVKYNGNKALSNLGFEPYFE--EREFNPIIENALDTTTKNHDFFSVKGDGY 304 >gi|224475873|ref|YP_002633479.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus carnosus subsp. carnosus TM300] gi|222420480|emb|CAL27294.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus carnosus subsp. carnosus TM300] Length = 324 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 73/305 (23%), Positives = 125/305 (40%), Gaps = 40/305 (13%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ LT +E+ K+ L ++ A++ + I H + Sbjct: 25 WVETEFKVSKDIASWKT---LTPEEQDTFKKALAGLTGLDTHQADDGMPLIMLHTKDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + A E +H+ ++ +I T+L +PS ++ N+ L T L P Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTL-------------LPS--SETNYLLD-TWVLEEPH 125 Query: 174 FTTGTKD---------ADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + A + + D + V V E FY+GF L L +M Sbjct: 126 LKFKSDKIVGNYHKLWAKEASVYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGRMTTSG 185 Query: 222 EQYQYIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 E + I+ DES+H F G+D ++ E + Q +L E E++Y H+ Sbjct: 186 EIIRKILLDESIHGVFTGLDA-QHLRNELSENEKQRADQHMYKLLEELYKNEVSYTHKLY 244 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLK-KEKNFFET 338 +GL A Y+++ N+ +G EP F+ E F P + +D K +FF Sbjct: 245 DD--IGL-AEDVLNYVRYNGNKALSNLGFEPYFE--EREFNPIIENALDTSTKNHDFFSV 299 Query: 339 RVTEY 343 + Y Sbjct: 300 KGDGY 304 >gi|225021562|ref|ZP_03710754.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii ATCC 33806] gi|224945553|gb|EEG26762.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii ATCC 33806] Length = 330 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/274 (22%), Positives = 113/274 (41%), Gaps = 31/274 (11%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL--AIYRH 107 N W+P +VP+ +DL W + N L + + L + + V +L A+ H Sbjct: 38 TGNFWLPEKVPVSNDLKSWSTLNDLEKQTTMRVFTGLTLLDTIQGTVGAVSMLPDAVTLH 97 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQY 165 L AF E+VH+ ++ I +L + E F E ++ KA L Y Sbjct: 98 -----EEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKIILTY 152 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 G ++ V + E FY+GF + K+ A+ + Sbjct: 153 YD---------GADPLKRK------VASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIR 197 Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKG 283 I+RDE++H + G + E+P +E ++ + +L+E EIAY + P G Sbjct: 198 LIIRDEAVHGYYIGYKFQQALAKESPAR-QEELKEYTFDVLYELYENEIAYTEDLYDPLG 256 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + ++++++ AN+ + +G E LF E Sbjct: 257 WT----EDVKRFLRYNANKALNNLGYEALFPADE 286 >gi|56694763|ref|YP_164483.1| ribonucleotide reductase subunit 2 [Cercopithecine herpesvirus 2] gi|52843315|gb|AAU88106.1| small subunit of ribonucleotide reductase [Cercopithecine herpesvirus 2] Length = 325 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 120/299 (40%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ +E+ D + GLTD+E + F ++++ LV N+ + Sbjct: 41 NRWLESELVFAGD---EEDVGGLTDEELNFYRFLFTFLSAADDLVTENLG-GLSGLFPQK 96 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--REV--PSITAKANWALQYTQ 167 + Y + Q E VHS + I L ++G+ Y R + P+I K +W Q Sbjct: 97 DILHYYVEQEAIEVVHSRVYSIIQLVLFRNDGQARREYVARTIHHPAIRVKVDWLEARVQ 156 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 S + + F+ ++ EG++F FA I L N + + I Sbjct: 157 ACES--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 202 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + H K ++ + EA +EI + P L Sbjct: 203 SRDEAVHTTASCYIYNNY-LAGHH---KPEPERVYRLFREAVEIEIGFIRSQAPADSRIL 258 Query: 288 N---APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ +K NFFE R T Y Sbjct: 259 DAAALAAIENYVRFSADRLLALIRMKPLFGAPAPAPSFPLSLMSTEKHTNFFECRSTAY 317 >gi|322389171|ref|ZP_08062732.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 903] gi|321144076|gb|EFX39493.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 903] Length = 321 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 119/277 (42%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 23 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 76 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 77 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNT 128 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT + V V E FY+GF L NK+ Sbjct: 129 NPFLQKKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 181 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L E Q+K + +++ TL E + Sbjct: 182 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 237 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 238 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 272 >gi|322391986|ref|ZP_08065450.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus peroris ATCC 700780] gi|321145212|gb|EFX40609.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus peroris ATCC 700780] Length = 320 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/276 (22%), Positives = 115/276 (41%), Gaps = 30/276 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 NALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTDT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAQIINEIYQNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPQDE-QEKLKDWMYDLLYTLYENEEGY 235 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|325675841|ref|ZP_08155525.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] gi|325553812|gb|EGD23490.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] Length = 335 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/309 (20%), Positives = 124/309 (40%), Gaps = 40/309 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT +E+ + R +++ +++ Sbjct: 43 TGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAV 99 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P L AF E+VH+ ++ I ++L + F E P++ KA L Y + Sbjct: 100 TPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFRWSEENPNLQRKAQIVLDYYK 159 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 160 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWASRAKLTNTADVIRLI 204 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G++ + + + E E + + +L E E+ Y + Sbjct: 205 IRDEAVHGYYIGYKYQRGLERVTEAERE-------ELKNYTFELLFELYDNEVEYTQDLY 257 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFE 337 + VGL ++++++ AN+ +G E LF E NP + + + +FF Sbjct: 258 DE--VGLTE-DVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSALSPNADENHDFFS 314 Query: 338 TRVTEYQQG 346 + Y G Sbjct: 315 GSGSSYVIG 323 >gi|315223183|ref|ZP_07865044.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus anginosus F0211] gi|315187615|gb|EFU21369.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus anginosus F0211] Length = 319 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 117/278 (42%), Gaps = 28/278 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSPEEKDLVGKVFGGLTLLDTMQSQSGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N E+ I Sbjct: 75 EAIRGDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIINEIYLNGNALEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I Q+ E P + F++ +L+ E Y E Sbjct: 180 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEEEQETFREWMYDLLYTLYENEEGYT-E 237 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 T+ G VG + ++++ AN+ +G + LF T Sbjct: 238 TLYDG-VGW-TEEVKTFLRYNANKALMNLGQDSLFPDT 273 >gi|332361651|gb|EGJ39455.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1056] gi|332365967|gb|EGJ43723.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1059] Length = 319 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/276 (23%), Positives = 120/276 (43%), Gaps = 30/276 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159 A+ + + F E+VH+ ++ I ++L N E+ I A Sbjct: 75 DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT A ++ + +F+ E FY+GF L NK+ Sbjct: 127 NSYLQKKAEIINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLAFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|221231890|ref|YP_002511042.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae ATCC 700669] gi|220674350|emb|CAR68896.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae ATCC 700669] Length = 320 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALREDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNMGQDPLF 270 >gi|327489434|gb|EGF21227.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1058] Length = 319 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/276 (23%), Positives = 116/276 (42%), Gaps = 30/276 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159 A+ + + F E+VH+ ++ I ++L N E+ I A Sbjct: 75 DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLAFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62] gi|254040830|gb|ACT57626.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62] Length = 30 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 24/25 (96%), Positives = 25/25 (100%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRML 25 MANNTGLSPIQAGEKRVNVDDKR+L Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRIL 25 >gi|148688625|gb|EDL20572.1| mCG1032193 [Mus musculus] Length = 150 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 20/145 (13%) Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 +P + KA+WAL++ G K+A + V + EG++F FA IL L Sbjct: 1 MPCVKKKADWALRWI----------GDKEAA---YGERVVAFAAVEGIFFSGSFASILWL 47 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 + M G+ + I RDE LH +F + HL K +Q+ + ++ A + Sbjct: 48 KKRGLMPGLTFSNELISRDEGLHWDFACLMFK-------HLAHKPSEQRVKEIITTAVRI 100 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYM 296 E + E +P +G++ +QY+ Sbjct: 101 EQEFLTEALPVKLIGMSCTLMKQYI 125 >gi|184201049|ref|YP_001855256.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria rhizophila DC2201] gi|183581279|dbj|BAG29750.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria rhizophila DC2201] Length = 326 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/269 (21%), Positives = 112/269 (41%), Gaps = 29/269 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ WK+ D + + L + + V ++ + L Sbjct: 34 TSNFWLPEKVPLSNDVQSWKTLTAEEQDLTMKVFTGLTLLDTIQGTVGAVSLIPDAKTLH 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQY 165 + AF E+VH+ ++ I ++L +DE F +E + KA+ L+Y Sbjct: 94 EEAVYTNI---AFMESVHAKSYSSIFSTLSSMKQIDEA--FRWSKENEHLQRKADIVLRY 148 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 + D + V + E FY+GF + K+ A+ + Sbjct: 149 YK-------------GDDPLKKK--VASTLLESFLFYSGFYLPMYFSSHAKLTNTADLIR 193 Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 I+RDE++H + G + E+P +E + + +L E E+AYA Sbjct: 194 LIIRDEAVHGYYIGYKYQKGLLQESPQR-QQELKDYTYDLLDELYENEVAYAEALYDS-- 250 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG ++++ + AN+ + +G E LF Sbjct: 251 VGW-TEDVKKFLHYNANKALNNLGYEALF 278 >gi|22536982|ref|NP_687833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae 2603V/R] gi|25010891|ref|NP_735286.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae NEM316] gi|76788606|ref|YP_329564.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae A909] gi|76799231|ref|ZP_00781405.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 18RS21] gi|77405557|ref|ZP_00782648.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae H36B] gi|77408849|ref|ZP_00785576.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae COH1] gi|77413113|ref|ZP_00789313.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 515] gi|22533837|gb|AAM99705.1|AE014229_6 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus agalactiae 2603V/R] gi|23095270|emb|CAD46480.1| Unknown [Streptococcus agalactiae NEM316] gi|76563663|gb|ABA46247.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus agalactiae A909] gi|76585414|gb|EAO61998.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 18RS21] gi|77160814|gb|EAO71925.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 515] gi|77172535|gb|EAO75677.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae COH1] gi|77175864|gb|EAO78642.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae H36B] gi|319744839|gb|EFV97177.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae ATCC 13813] Length = 319 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 46/289 (15%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAQEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N E+ I Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G +A Q+ + ++ E FY+GF L NK+ Sbjct: 127 NEFLQEKARIINDIYANG--NALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270 +AE + I+RDES+H G + + + + EN W + +Q + TL Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQLYENEEKYTKTL 239 Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + + + E M ++++ AN+ +G +PLF T N Sbjct: 240 YDGVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275 >gi|324990559|gb|EGC22495.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK353] Length = 319 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/276 (23%), Positives = 120/276 (43%), Gaps = 30/276 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159 A+ + + F E+VH+ ++ I ++L N E+ I A Sbjct: 75 DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT A ++ + +F+ E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLSFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|295397900|ref|ZP_06807962.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] gi|294973880|gb|EFG49645.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] Length = 323 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 68/281 (24%), Positives = 124/281 (44%), Gaps = 34/281 (12%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L+ E+ MI + G ++L + + + Sbjct: 25 TWEK---LTEQFWLDTRIPLSNDLDTWRT---LSAREQDMIGKVFGGLTLLDTLQSEDGM 78 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159 ++ + F E+VH+ ++ I ++L N +E+ I A + Sbjct: 79 ESLKASIRTQHEEAVYNNIQFMESVHAKSYSSIFSTL--------NTPKEIDKIFAWTRE 130 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMV 218 N +QY + + GT D ++ V V E FY+GF A + LG K+ Sbjct: 131 NEFIQYKANRINGIYQNGT-DLQRK------VASVFLESFLFYSGFYAPLWYLGNG-KLP 182 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H G + + +I L +KE Q+ + +LL Y +E Sbjct: 183 NVAEIIKLILRDESVH---GTYIGYKFQIAFNQL-SKEEQEDMQNWAF--SLLFELYENE 236 Query: 279 TMPKGFVGLNAPSCEQ---YMQFIANRRCHQIGLEPLFKYT 316 ++ + E ++++ AN+ +G +PLF T Sbjct: 237 AKYSEYIYDDLGWTEDVKIFLRYNANKALQNLGFDPLFPDT 277 >gi|305681191|ref|ZP_07403998.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium matruchotii ATCC 14266] gi|305659396|gb|EFM48896.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium matruchotii ATCC 14266] Length = 330 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/274 (22%), Positives = 113/274 (41%), Gaps = 31/274 (11%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL--AIYRH 107 N W+P +VP+ +DL W + N L + + L + + V +L A+ H Sbjct: 38 TGNFWLPEKVPVSNDLKSWSTLNELEKQTTMRVFTGLTLLDTIQGTVGAVSMLPDAVTLH 97 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQY 165 L AF E+VH+ ++ I +L + E F E ++ KA L Y Sbjct: 98 -----EEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKIILTY 152 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 G ++ V + E FY+GF + K+ A+ + Sbjct: 153 YD---------GADPLKRK------VASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIR 197 Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKG 283 I+RDE++H + G + E+P +E ++ + +L+E EIAY + P G Sbjct: 198 LIIRDEAVHGYYIGYKFQQALAKESPAR-QEELKEYTFDVLYELYENEIAYTEDLYDPLG 256 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + ++++++ AN+ + +G E LF E Sbjct: 257 WT----EDVKRFLRYNANKALNNLGYEALFPADE 286 >gi|322376536|ref|ZP_08051029.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. M334] gi|321282343|gb|EFX59350.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. M334] Length = 320 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|207345015|gb|EDZ71971.1| YGR180Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 224 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 9/168 (5%) Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 D + V + EG++ +A + L M G+A + I RD + +F + Sbjct: 50 DDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLL 109 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 HL TK + ++ EA +E Y ++P G++ S Y++F+A+ Sbjct: 110 F-------AHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVAD 162 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G E + NPF +M +V K FFE +V++YQ+ +++ Sbjct: 163 GLLQGFGNEKYYNAV-NPFEFMEDVATAGK-TTFFEKKVSDYQKASDM 208 >gi|296393703|ref|YP_003658587.1| ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM 44985] gi|296180850|gb|ADG97756.1| Ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM 44985] Length = 334 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/303 (21%), Positives = 125/303 (41%), Gaps = 28/303 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + L +DE+ + R +++ + +++ Sbjct: 42 VGNFWLPEKVPLSNDIQSWHT---LNEDEQRLTMRVFTGLTLLDTIQGSVGAVSLIPDAL 98 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL-GLDE-GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L G E E F E P++ KA L+ + Sbjct: 99 TPHEEAVYTNIAFMESVHAKSYSSIFSTLTGTPEIDEAFRWSEENPALQKKAAIVLERYR 158 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 159 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 203 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + G +++ P +E + + ++L + E+ Y + VG Sbjct: 204 IRDEAVHGYYIGYKYQRGLQMSTPER-REELKDFTFSLLFDLYENEVEYTQDLYDP--VG 260 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343 L ++++++ AN+ +G E LF E NP + + + +FF + Y Sbjct: 261 LTE-DVKKFLRYNANKALMNLGYEGLFPKDETAVNPAILSALSPNADENHDFFSGSGSSY 319 Query: 344 QQG 346 G Sbjct: 320 VIG 322 >gi|307706628|ref|ZP_07643435.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus mitis SK321] gi|307618083|gb|EFN97243.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus mitis SK321] Length = 320 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|293365329|ref|ZP_06612046.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus oralis ATCC 35037] gi|306825287|ref|ZP_07458629.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307703869|ref|ZP_07640810.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus oralis ATCC 35037] gi|315613100|ref|ZP_07888010.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis ATCC 49296] gi|291316779|gb|EFE57215.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus oralis ATCC 35037] gi|304432723|gb|EFM35697.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307622704|gb|EFO01700.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus oralis ATCC 35037] gi|315314662|gb|EFU62704.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis ATCC 49296] Length = 320 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + V V E FY+GF L NK+ Sbjct: 127 NPYLQRKAEIINEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|289167885|ref|YP_003446154.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis B6] gi|288907452|emb|CBJ22289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis B6] Length = 321 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 76 QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 127 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + V V E FY+GF L NK+ Sbjct: 128 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 180 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 181 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 236 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 237 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 271 >gi|295397108|ref|ZP_06807219.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] gi|294974650|gb|EFG50366.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] Length = 338 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 115/279 (41%), Gaps = 36/279 (12%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK S W+ T +P+ +D W+ LT +ER ++ + + ++L + Sbjct: 41 TWEKLTSQF---WLDTRIPVSNDRDDWRI---LTKEERDVVNKAFAGLTALDTLQSEEGA 94 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + L F E+VH+ ++ I SL N RE+ I A Sbjct: 95 NVMRDAVRTQHEEAVLNNILFMESVHAKSYSTIFISL--------NTTREIDEIFDWANN 146 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMV 218 N LQY + + GT LQ V V E FY+GF A + LG NK+ Sbjct: 147 NEYLQYKARRINEIYQNGTG------LQQK-VASVFLETYLFYSGFYAPLWYLGN-NKLE 198 Query: 219 GIAEQYQYIMRDESLH---LNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 +AE + I+RDES+H L + + NQ+ I+ + E + +L + E Sbjct: 199 NVAEIIKLIIRDESVHGTYLGYKFQLGYNQLSIDEQN----ELKDWMYALLFDLMENEEK 254 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 Y E + VG ++ + AN+ +G EP + Sbjct: 255 YTEEIYTQ--VGW-TKEVNTFVHYNANKALQNLGFEPFY 290 >gi|312140539|ref|YP_004007875.1| ribonucleoside-diphosphate reductase nrdf [Rhodococcus equi 103S] gi|311889878|emb|CBH49195.1| ribonucleoside-diphosphate reductase NrdF [Rhodococcus equi 103S] Length = 329 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/309 (20%), Positives = 124/309 (40%), Gaps = 40/309 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT +E+ + R +++ +++ Sbjct: 37 TGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAV 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P L AF E+VH+ ++ I ++L + F E P++ KA L Y + Sbjct: 94 TPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFRWSEENPNLQRKAQIVLDYYK 153 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 154 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWASRAKLTNTADVIRLI 198 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G++ + + + E E + + +L E E+ Y + Sbjct: 199 IRDEAVHGYYIGYKYQRGLERVTEAERE-------ELKNYTFELLFELYDNEVEYTQDLY 251 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFE 337 + VGL ++++++ AN+ +G E LF E NP + + + +FF Sbjct: 252 DE--VGLTE-DVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSALSPNADENHDFFS 308 Query: 338 TRVTEYQQG 346 + Y G Sbjct: 309 GSGSSYVIG 317 >gi|32709433|gb|AAP86735.1| NrdB [Enterobacteria phage U5] Length = 391 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 69/310 (22%), Positives = 134/310 (43%), Gaps = 38/310 (12%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L ++ + NL + + +S+ + +S+P Sbjct: 48 WRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSI----------- 155 ++ F E +HS ++ +I+ +L D ++F+ + + SI Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLVKT 164 Query: 156 ----TAKANW--ALQYTQTLSSPSFTTGTKDADQEFLQDLFV-FYVV--FEGMWFYTGFA 206 AK N+ ++ Q + +A ++ ++ L++ +V+ E + FY FA Sbjct: 165 REWENAKENYESSIGSCQQNDIEMYEEIMFNAKRDLMKSLYLCLHVINALEAIRFYVSFA 224 Query: 207 QILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQKS 261 + + + M G A+ ++I RDE LHL +I Q++ + W K E +Q++ Sbjct: 225 CTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQEA 284 Query: 262 RTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TEN 318 + E E +A G V GLN S ++ ++ R Q GL P+ ++ Sbjct: 285 VDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKH 344 Query: 319 PFPWMSEVID 328 P+PW+ E ++ Sbjct: 345 PYPWIREYLN 354 >gi|326692188|ref|ZP_08229193.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc argentinum KCTC 3773] Length = 325 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/284 (23%), Positives = 114/284 (40%), Gaps = 45/284 (15%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ ++ E+ + G + ++L + + + Sbjct: 26 TWEK---LTQQFWLDTRIPISNDLRHWRGN--MSPQEQKTMNLVFGGLTTLDTLQSQDGL 80 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + N + L F E++H+ ++ I +L E I A +W Sbjct: 81 AQLKFDSLNQKEEAVLNNIQFMESIHAKSYSSIFETL-----------NEKSEIEAIFDW 129 Query: 162 A-----LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 A LQY + + TGT + + V E FY+GF L N+ Sbjct: 130 ADNNEFLQYKANRINDIYQTGTSLQKK-------IASVFLETFLFYSGFYTPLYFLGHNR 182 Query: 217 MVGIAEQYQYIMRDESLH---LNFGIDV-INQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 M+ +AE + I+RDES+H + + + NQ+ + E Q +L++ E Sbjct: 183 MLNVAEIIKLIIRDESVHGTYIGYKFQIGFNQLSEDEQ----AELQAWMYDLLYDLYENE 238 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313 Y HE + EQ M F+ AN+ +G EP+F Sbjct: 239 EKYTHELYD------DLGWYEQVMTFLRYNANKALMNLGQEPMF 276 >gi|218291056|ref|ZP_03495088.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1] gi|218239010|gb|EED06216.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1] Length = 317 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 18/205 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI---VLAIYRHLSN 110 W P ++ D WK+ N + ER +I R F + E V ++ ++A+ R Sbjct: 37 WDPRDIDFSKDKEDWKAMN---EAERRVILRLCSLFVAGEEAVTLDLLPLIMAVARE-GR 92 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 E YL FEEA H+ F+ + + + +L +++ ++ + + L Sbjct: 93 LEEEMYLTTFLFEEAKHTEVFRRFLDEVAGESSDLSTFHKD--------HYRKIFYEYLP 144 Query: 171 SPSFTTGTKDADQEFLQDLFVFY-VVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIM 228 + D E + V Y +V EG+ TG+ A +L + NK+ G+ + + + Sbjct: 145 Q-AMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFYTALQKENKLPGLIQAIRLLQ 203 Query: 229 RDESLHLNFGIDVINQIKIENPHLW 253 RDES H+ +G +++++ EN ++W Sbjct: 204 RDESRHIGYGTYLLSRLISENEYIW 228 >gi|54026269|ref|YP_120511.1| ribonucleotide-diphosphate reductase subunit beta [Nocardia farcinica IFM 10152] gi|54017777|dbj|BAD59147.1| putative ribonucleoside-diphosphate reductase beta subunit [Nocardia farcinica IFM 10152] Length = 320 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/309 (21%), Positives = 124/309 (40%), Gaps = 40/309 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W N LT E+ + R +++ +++ Sbjct: 28 TGNFWLPEKVPVSNDIPSW---NTLTPHEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P L AF E+VH+ ++ I ++L + E F E ++ KA L Y Q Sbjct: 85 TPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSEENRNLQRKAEIVLDYYQ 144 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 145 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMHWSSRAKLTNTADMIRLI 189 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G++ +++ + E E + + +L+E E+ Y + Sbjct: 190 IRDEAVHGYYIGYKYQRGLEQVSEAERE-------ELKNYTFELLYELYENEVEYTQDLY 242 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFE 337 + VGL + ++++ AN+ +G E LF E NP + + + +FF Sbjct: 243 DE--VGLTE-DVKTFLRYNANKALMNLGYEGLFPADETRVNPAILSALSPNADENHDFFS 299 Query: 338 TRVTEYQQG 346 + Y G Sbjct: 300 GSGSSYVIG 308 >gi|269861752|ref|XP_002650564.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220065950|gb|EED43491.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 106 Score = 54.3 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 ++ EA +E + E++P +G+N QY++F+A+R +G + ++ + NPF +M Sbjct: 10 IVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM 68 Query: 324 SEVIDLKKEKNFFETRVTEYQQG 346 E I L+ + NFFE R YQ+G Sbjct: 69 -ENISLQGKTNFFERREANYQKG 90 >gi|296128314|ref|YP_003635564.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM 20109] gi|296020129|gb|ADG73365.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM 20109] Length = 326 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 66/305 (21%), Positives = 122/305 (40%), Gaps = 32/305 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT+ E+ M R +++ +++ Sbjct: 34 VGNFWLPEKVPVSNDIQSWAT---LTEAEKTMTTRVFTGLTLLDTIQGTVGAVSLIPDAL 90 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L +DE F E P++ KA L Y Sbjct: 91 TPHEEAVYTNIAFMESVHAKSYSSIFSTLISTKEIDEA--FRWSEENPNLQRKAEIVLDY 148 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 + D + V + E FY+GF + K+ A+ + Sbjct: 149 YR-------------GDDPLKRK--VASTMLESFLFYSGFYAPMYWASRAKLTNTADLIR 193 Query: 226 YIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 I+RDE++H + I Q +E E + + +L E E+ Y + + Sbjct: 194 LIIRDEAVH-GYYIGYKFQKGLERVSEAERAELKDYTFNLLFELYDNEVEYTQDLYDE-- 250 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVT 341 +GL ++++++ AN+ +G E LF E NP + + + +FF + Sbjct: 251 LGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILAALSPNADENHDFFSGSGS 309 Query: 342 EYQQG 346 Y G Sbjct: 310 SYVIG 314 >gi|149013339|ref|ZP_01834070.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP19-BS75] gi|147762929|gb|EDK69876.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP19-BS75] Length = 320 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKTEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNMGQDPLF 270 >gi|220912864|ref|YP_002488173.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter chlorophenolicus A6] gi|219859742|gb|ACL40084.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus A6] Length = 324 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W N LT E+ + R +++ +++ Sbjct: 32 VNNFWLPEKVPLSNDVQSW---NTLTPVEQQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L + E F E ++ KA + Y Q Sbjct: 89 TPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFRWSTENENLQKKAQIVMDYYQ 148 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 149 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 193 Query: 228 MRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + I Q +E +E + + +L E E+ Y H+ VG Sbjct: 194 IRDEAVH-GYYIGYKFQRALETVSEERRQEIKDYTFELLFELYENEVQYTHDLYDG--VG 250 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 L A ++++ + AN+ +G E +F Sbjct: 251 L-AEDVKKFLHYNANKALMNLGYEAMF 276 >gi|319948549|ref|ZP_08022680.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea P4] gi|319437796|gb|EFV92785.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea P4] Length = 338 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/308 (20%), Positives = 120/308 (38%), Gaps = 38/308 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W++ LT+ E+ M R +++ +++ S Sbjct: 46 TTNFWLPEKVPVSNDIPSWQT---LTEYEQTMTARVFTGLTLLDTIQGTVGAVSMIPDAS 102 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L AF E+VH+ ++ I ++L P I WA + Sbjct: 103 TPHEEAVLTNIAFMESVHAKSYSTIFSTLC-----------STPQIDEAFRWAEENPYLQ 151 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 G D + + V+ E FY+GF + K+ A+ + I+R Sbjct: 152 RKAKIILGYYAGDNPLKRK--IASVMLESFMFYSGFYLPMRWSSRAKLTNTADVIRLIIR 209 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-P 281 DE++H + G++ + Q + + E + + +L E E Y + P Sbjct: 210 DEAVHGYYIGYKYQRGLEHVTQAERD-------ELKDYTFELLFELYDNEADYTEDLYDP 262 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLKKEKN--FFET 338 G+ ++++++ AN+ +G E +F E P + + ++N FF Sbjct: 263 VGWT----EDVKKFLRYNANKALMNMGYEGMFPKDETDVDPAILSALSPNADENHDFFSG 318 Query: 339 RVTEYQQG 346 + Y G Sbjct: 319 SGSSYVMG 326 >gi|149004132|ref|ZP_01828935.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP14-BS69] gi|237649545|ref|ZP_04523797.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae CCRI 1974] gi|237822455|ref|ZP_04598300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae CCRI 1974M2] gi|147757865|gb|EDK64875.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP14-BS69] Length = 320 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKTEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNMGQDPLF 270 >gi|225860977|ref|YP_002742486.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae Taiwan19F-14] gi|298229749|ref|ZP_06963430.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255394|ref|ZP_06978980.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502819|ref|YP_003724759.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae TCH8431/19A] gi|225727952|gb|ACO23803.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298238414|gb|ADI69545.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae TCH8431/19A] gi|327389423|gb|EGE87768.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Streptococcus pneumoniae GA04375] Length = 320 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNMGQDPLF 270 >gi|32709437|gb|AAP86737.1| NrdB [Enterobacteria phage TuIa] Length = 391 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 69/310 (22%), Positives = 133/310 (42%), Gaps = 38/310 (12%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L ++ + NL + + +S+ + LS+P Sbjct: 48 WRPEEVNLMLDSAQF---NKLPQFQQDIFTNNLKYQSLLDSIQGRAPSAVLMALLSDPSL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-------MYREVPSI----------- 155 ++ F E +HS ++ +I+ +L D ++F+ + + SI Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGKYYDDVLVKT 164 Query: 156 ----TAKANW--ALQYTQTLSSPSFTTGTKDADQEFLQDLFV-FYVV--FEGMWFYTGFA 206 AK N+ ++ Q + +A + ++ L++ +V+ E + FY FA Sbjct: 165 RHWENAKENYECSIGSCQQNDIEMYEEIMFNAKHDLMKSLYLCLHVINALEAIRFYVSFA 224 Query: 207 QILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWT---KEFQQKS 261 + + + M G A+ ++I RDE LHL +I Q++ + W KE +Q++ Sbjct: 225 CTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVQIAKECEQEA 284 Query: 262 RTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TEN 318 + E E +A G G+N S ++ ++ R Q GL P+ T++ Sbjct: 285 VDIFMEVNSQEKEWAAHLFKDGTCPGINTQSMCAFVDYLTVSRMKQCGLPCPITDAPTKH 344 Query: 319 PFPWMSEVID 328 P+PW+ E ++ Sbjct: 345 PYPWIREYLN 354 >gi|255683173|ref|YP_003084381.1| UL40 [Duck enteritis virus] gi|158343199|gb|ABW35292.1| ribonucleotide reductase subunit 2 [Anatid herpesvirus 1] gi|208401182|gb|ACI26683.1| UL40 [Anatid herpesvirus 1] gi|254839988|gb|ACT83534.1| UL40 [Anatid herpesvirus 1] Length = 355 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 69/301 (22%), Positives = 121/301 (40%), Gaps = 36/301 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109 N W+ +E+ DD A + LT E + F ++++ LV N+ ++ ++ Sbjct: 74 NRWLESELVFLDDAA---DVDKLTPSELDFYRFIFTFLSAADDLVNCNLGNLMGLFEE-- 128 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY-----REVPSITAKANWALQ 164 + + Y + Q EAVHS + I L ++ Y RE SI +K W + Sbjct: 129 -KDIQHYYVEQESIEAVHSRVYSIIQLILFKNDATARAEYVKKAIRET-SIRSKVKWISE 186 Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 + + E + + ++ ++ EG++F FA I + N V + Sbjct: 187 RVE--------------ECEDIPEKYILMILIEGLFFAASFAAIAYMRTRNIFVVTCQAN 232 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I RDE++H + N+ HL + K + + EA LE + P Sbjct: 233 TMISRDETIHTKASCVIYNK------HLQKYKKPSTCRIYKLFSEAVKLECEFLRARAPS 286 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 ++ + Y++F A+R IGL PLF + + ++ NFFE R T Sbjct: 287 DSAIIDTEAICSYVRFNADRLLSDIGLAPLFDEPPPKHDFPLAFMATSQQTNFFERRNTT 346 Query: 343 Y 343 Y Sbjct: 347 Y 347 >gi|297570727|ref|YP_003696501.1| ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum DSM 20595] gi|296931074|gb|ADH91882.1| Ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum DSM 20595] Length = 324 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/291 (21%), Positives = 121/291 (41%), Gaps = 40/291 (13%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+++ K W++ N W+P ++P+ +D+ W N L E+LM R Sbjct: 17 NKIIDEKDQEVWDRL---TGNFWLPEKIPLSNDIQSW---NTLKPHEQLMTTRVFTGLTL 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMY 149 +++ +++ P L AF E+VH+ ++ I ++L + E F Sbjct: 71 LDTVQGTVGAISLIPDAITPHEEAVLTNIAFMESVHAKSYSSIFSTLISSQEIEETFRWS 130 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E P + KA L Y + D E + V + E FY+GF + Sbjct: 131 EENPYLQKKAQIVLDYY------------RGDDPEKRK---VASTMLESFLFYSGFYAPM 175 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 K+ A+ + I+RDE++H + I Q ++ ++++ M + + Sbjct: 176 YWSAHAKLTNTADLIRLIIRDEAVH-GYYIGYKYQQAVKRASA-----ERQAELMDYTYS 229 Query: 270 LLEIAYAHETMPKGF-------VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 LLE Y +E +G+ +GL + ++++ AN+ +G E LF Sbjct: 230 LLEDLYENE---EGYTESLYDEMGLT-EDVKMFLRYNANKALMNLGYEALF 276 >gi|15903110|ref|NP_358660.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae R6] gi|116517162|ref|YP_816517.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae D39] gi|148985789|ref|ZP_01818917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP3-BS71] gi|148990437|ref|ZP_01821595.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP6-BS73] gi|148999044|ref|ZP_01826476.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP11-BS70] gi|149008157|ref|ZP_01831676.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP18-BS74] gi|149026429|ref|ZP_01836566.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP23-BS72] gi|168483243|ref|ZP_02708195.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1873-00] gi|168486506|ref|ZP_02711014.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1087-00] gi|168491101|ref|ZP_02715244.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC0288-04] gi|168493105|ref|ZP_02717248.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC3059-06] gi|168577270|ref|ZP_02723064.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae MLV-016] gi|169833110|ref|YP_001694622.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae Hungary19A-6] gi|182684087|ref|YP_001835834.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae CGSP14] gi|194397329|ref|YP_002037788.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae G54] gi|225854653|ref|YP_002736165.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae JJA] gi|225856856|ref|YP_002738367.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae P1031] gi|225858968|ref|YP_002740478.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae 70585] gi|303255568|ref|ZP_07341620.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae BS455] gi|303260588|ref|ZP_07346554.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP-BS293] gi|303262722|ref|ZP_07348661.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP14-BS292] gi|303265256|ref|ZP_07351167.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS397] gi|303267603|ref|ZP_07353445.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS457] gi|303269940|ref|ZP_07355678.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS458] gi|307067834|ref|YP_003876800.1| ribonucleotide reductase subunit beta [Streptococcus pneumoniae AP200] gi|307127225|ref|YP_003879256.1| ribonucleoside-diphosphate reductase subunit beta [Streptococcus pneumoniae 670-6B] gi|15458689|gb|AAK99870.1| Nonessential ribonucleoside-diP reductase 2, subunit beta, class I, function unknown [Streptococcus pneumoniae R6] gi|116077738|gb|ABJ55458.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae D39] gi|147755114|gb|EDK62169.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP11-BS70] gi|147760396|gb|EDK67375.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP18-BS74] gi|147922093|gb|EDK73216.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP3-BS71] gi|147924289|gb|EDK75383.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP6-BS73] gi|147929260|gb|EDK80261.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP23-BS72] gi|168995612|gb|ACA36224.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae Hungary19A-6] gi|172043347|gb|EDT51393.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1873-00] gi|182629421|gb|ACB90369.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae CGSP14] gi|183570430|gb|EDT90958.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1087-00] gi|183574343|gb|EDT94871.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC0288-04] gi|183576617|gb|EDT97145.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC3059-06] gi|183577169|gb|EDT97697.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae MLV-016] gi|194356996|gb|ACF55444.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus pneumoniae G54] gi|225720498|gb|ACO16352.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae 70585] gi|225724090|gb|ACO19943.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae JJA] gi|225725515|gb|ACO21367.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae P1031] gi|301794279|emb|CBW36700.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae INV104] gi|301800116|emb|CBW32717.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae OXC141] gi|301801954|emb|CBW34682.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae INV200] gi|302597474|gb|EFL64568.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae BS455] gi|302636154|gb|EFL66650.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP14-BS292] gi|302638301|gb|EFL68770.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP-BS293] gi|302640522|gb|EFL70931.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS458] gi|302642869|gb|EFL73174.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS457] gi|302645227|gb|EFL75463.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS397] gi|306409371|gb|ADM84798.1| Ribonucleotide reductase, beta subunit [Streptococcus pneumoniae AP200] gi|306484287|gb|ADM91156.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae 670-6B] gi|332074795|gb|EGI85267.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA41301] gi|332075112|gb|EGI85583.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA17545] gi|332200632|gb|EGJ14704.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA41317] gi|332201651|gb|EGJ15721.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA47368] gi|332203034|gb|EGJ17102.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA47901] Length = 320 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNMGQDPLF 270 >gi|125717616|ref|YP_001034749.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK36] gi|323352633|ref|ZP_08087603.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis VMC66] gi|125497533|gb|ABN44199.1| Ribonucleoside-diphosphate reductase 2, beta subunit, putative [Streptococcus sanguinis SK36] gi|322121669|gb|EFX93415.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis VMC66] gi|325688330|gb|EGD30349.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK72] gi|325690076|gb|EGD32080.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK115] gi|332363056|gb|EGJ40843.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK355] Length = 319 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/276 (23%), Positives = 120/276 (43%), Gaps = 30/276 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159 A+ + + F E+VH+ ++ I ++L N E+ I A Sbjct: 75 DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT A ++ + +F+ E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLAFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|324993305|gb|EGC25225.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK405] gi|324995391|gb|EGC27303.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK678] gi|325697177|gb|EGD39064.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK160] gi|327461576|gb|EGF07907.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1] gi|327473300|gb|EGF18720.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK408] Length = 319 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/276 (23%), Positives = 120/276 (43%), Gaps = 30/276 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159 A+ + + F E+VH+ ++ I ++L N E+ I A Sbjct: 75 DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT A ++ + +F+ E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|289178104|gb|ADC85350.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium animalis subsp. lactis BB-12] Length = 326 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/275 (20%), Positives = 111/275 (40%), Gaps = 41/275 (14%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ ++D E + R +++ +++ Sbjct: 34 TGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 90 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L +DE F+ + P + KA L Y Sbjct: 91 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEA--FDWSEKNPHLQRKAQIVLDY 148 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 + D + V + E FY+GF + K+ A+ + Sbjct: 149 YE-------------GDDPLKRK--VASTLLESFLFYSGFYLPMYFSSHAKLTNTADVIR 193 Query: 226 YIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 I+RDE++H + G+++ + K E + + +L+E E+ Y H Sbjct: 194 LIIRDEAVHGYYIGYKYQKGLEMASDAK-------RAEMETYTYDLLNELYENEVEYTHS 246 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + VGL + E+++ + AN+ +G LF Sbjct: 247 LYDE--VGL-SDDVEKFLHYNANKALMNLGYPALF 278 >gi|77410697|ref|ZP_00787056.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae CJB111] gi|77163233|gb|EAO74185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae CJB111] Length = 319 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/289 (22%), Positives = 118/289 (40%), Gaps = 46/289 (15%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G +++ + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSAQEKDLVGKVFGGLTLLDTMQSETGI 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + P L F E+VH+ ++ I ++L N E+ I Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G +A Q+ + ++ E FY+GF L NK+ Sbjct: 127 NEFLQEKARIINDIYANG--NALQKKVASTYL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKE--FQQKSRTMLHEATL 270 +AE + I+RDES+H G + + + + EN W + +Q + TL Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQLYENEEKYTKTL 239 Query: 271 LE-IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + + + E M ++++ AN+ +G +PLF T N Sbjct: 240 YDGVGWTEEVMT-------------FLRYNANKALMNLGQDPLFPDTAN 275 >gi|69245952|ref|ZP_00603724.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO] gi|227552561|ref|ZP_03982610.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330] gi|257880353|ref|ZP_05660006.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,230,933] gi|257882206|ref|ZP_05661859.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,502] gi|257885400|ref|ZP_05665053.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,501] gi|257888211|ref|ZP_05667864.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,141,733] gi|257891012|ref|ZP_05670665.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,410] gi|257894265|ref|ZP_05673918.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,408] gi|257896901|ref|ZP_05676554.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12] gi|257899642|ref|ZP_05679295.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15] gi|258614695|ref|ZP_05712465.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecium DO] gi|260562343|ref|ZP_05832857.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68] gi|261209282|ref|ZP_05923674.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6] gi|289567001|ref|ZP_06447402.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium D344SRF] gi|293378468|ref|ZP_06624631.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium PC4.1] gi|293553988|ref|ZP_06674590.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] gi|293563177|ref|ZP_06677635.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1162] gi|293568383|ref|ZP_06679704.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1071] gi|293570828|ref|ZP_06681875.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] gi|294615274|ref|ZP_06695151.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1636] gi|294617336|ref|ZP_06696975.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1679] gi|294623134|ref|ZP_06702020.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium U0317] gi|314939361|ref|ZP_07846602.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133a04] gi|314941564|ref|ZP_07848449.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133C] gi|314949609|ref|ZP_07852933.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0082] gi|314953716|ref|ZP_07856591.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133A] gi|314992172|ref|ZP_07857616.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133B] gi|314997663|ref|ZP_07862593.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133a01] gi|68195482|gb|EAN09926.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO] gi|227178310|gb|EEI59282.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330] gi|257814581|gb|EEV43339.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,230,933] gi|257817864|gb|EEV45192.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,502] gi|257821256|gb|EEV48386.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,501] gi|257824265|gb|EEV51197.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,141,733] gi|257827372|gb|EEV53998.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,410] gi|257830644|gb|EEV57251.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,408] gi|257833466|gb|EEV59887.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12] gi|257837554|gb|EEV62628.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15] gi|260073267|gb|EEW61608.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68] gi|260076828|gb|EEW64563.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6] gi|289161202|gb|EFD09101.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium D344SRF] gi|291588904|gb|EFF20731.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1071] gi|291591871|gb|EFF23503.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1636] gi|291596409|gb|EFF27663.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1679] gi|291597503|gb|EFF28668.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium U0317] gi|291601845|gb|EFF32095.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] gi|291604868|gb|EFF34344.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1162] gi|291609096|gb|EFF38371.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] gi|292642797|gb|EFF60944.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium PC4.1] gi|313588298|gb|EFR67143.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133a01] gi|313593275|gb|EFR72120.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133B] gi|313594300|gb|EFR73145.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133A] gi|313599623|gb|EFR78466.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133C] gi|313641346|gb|EFS05926.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133a04] gi|313644033|gb|EFS08613.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0082] Length = 321 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/281 (22%), Positives = 116/281 (41%), Gaps = 30/281 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L+ E+ + G +++ + + + Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSQLEKDTVGHVFGGLTLLDTVQSESGM 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 76 DQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFDWTNT 127 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + GT + + V E FY+GF L NK+ Sbjct: 128 NPYLQKKAERINEIYKHGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 180 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I Q+ E P + + +L+E E Y E Sbjct: 181 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEAEQETLKDWMYNLLYELYENEERYTEE 239 Query: 279 TM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 P G+ + ++++ AN+ +G++PLF T N Sbjct: 240 LYDPIGW----TEEVKTFLRYNANKALMNLGMDPLFPDTAN 276 >gi|183601891|ref|ZP_02963260.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis HN019] gi|219682805|ref|YP_002469188.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis AD011] gi|241190381|ref|YP_002967775.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195787|ref|YP_002969342.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218776|gb|EDT89418.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis HN019] gi|219620455|gb|ACL28612.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium animalis subsp. lactis AD011] gi|240248773|gb|ACS45713.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250341|gb|ACS47280.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793368|gb|ADG32903.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis V9] Length = 321 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/275 (20%), Positives = 111/275 (40%), Gaps = 41/275 (14%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ ++D E + R +++ +++ Sbjct: 29 TGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 85 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L +DE F+ + P + KA L Y Sbjct: 86 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEA--FDWSEKNPHLQRKAQIVLDY 143 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 + D + V + E FY+GF + K+ A+ + Sbjct: 144 YE-------------GDDPLKRK--VASTLLESFLFYSGFYLPMYFSSHAKLTNTADVIR 188 Query: 226 YIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 I+RDE++H + G+++ + K E + + +L+E E+ Y H Sbjct: 189 LIIRDEAVHGYYIGYKYQKGLEMASDAK-------RAEMETYTYDLLNELYENEVEYTHS 241 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + VGL + E+++ + AN+ +G LF Sbjct: 242 LYDE--VGL-SDDVEKFLHYNANKALMNLGYPALF 273 >gi|168489010|ref|ZP_02713209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP195] gi|183572389|gb|EDT92917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP195] gi|332073523|gb|EGI84002.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA17570] Length = 320 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNMGQDPLF 270 >gi|308814593|ref|YP_003934867.1| ribonucleotide reductase B subunit [Shigella phage SP18] gi|308206185|gb|ADO19584.1| ribonucleotide reductase B subunit [Shigella phage SP18] Length = 392 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/311 (21%), Positives = 134/311 (43%), Gaps = 39/311 (12%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L + ++ + NL + + +S+ A+ +S+P Sbjct: 48 WRPEEVNLMMDGAQF---NKLPEHQQNIFTNNLKYQSLLDSIQGRAPAAALAALVSDPSL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-----------NWA 162 ++ F E +HS ++ +I+ +L D ++F+ +I +A N Sbjct: 105 DTWIQTWTFSETIHSRSYTHIMRNLYTDPAKVFDEILLDDAIMKRAESIGHYYDDVLNKT 164 Query: 163 LQYTQTLSSPSFTTGTKDADQE--------------FLQDLFV-FYVV--FEGMWFYTGF 205 Q+ ++ T +AD+ ++ L++ +V+ E + FY F Sbjct: 165 RQWQNQIAFVELAKETPEADERLERAIKQESIAKRALMKSLYLCLHVINALEAIRFYVSF 224 Query: 206 AQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTK---EFQQK 260 A + + + M G A+ ++I RDE LHL ++ Q++ + W K E + + Sbjct: 225 ACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYILRQLQTGVDGDEWVKIAHECEAE 284 Query: 261 SRTMLHEATLLEIAYA-HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL--EPLFKYTE 317 + + E E +A H G GL+ +++ ++ R Q GL E + + T+ Sbjct: 285 AAAIFMEVNRQEKEWAVHLFKDGGLPGLSVEILNRFIDYLTVSRMKQCGLPCEIVLESTK 344 Query: 318 NPFPWMSEVID 328 +P PW+ E ++ Sbjct: 345 HPIPWIREYLN 355 >gi|15901045|ref|NP_345649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae TIGR4] gi|111657123|ref|ZP_01407908.1| hypothetical protein SpneT_02001649 [Streptococcus pneumoniae TIGR4] gi|14972661|gb|AAK75289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus pneumoniae TIGR4] Length = 320 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNMGQDPLF 270 >gi|332686050|ref|YP_004455824.1| ribonucleotide reductase of class Ib (aerobic), subunit beta [Melissococcus plutonius ATCC 35311] gi|332370059|dbj|BAK21015.1| ribonucleotide reductase of class Ib (aerobic), beta subunit [Melissococcus plutonius ATCC 35311] Length = 323 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 117/290 (40%), Gaps = 48/290 (16%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L++ E+ G +++ + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSELEKTTFAHVFGGLTLLDTVQSESGI 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 DQLRKDARTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIEEIFNWIDT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + G + V V E FY+GF L NK+ Sbjct: 127 NQQLQYKAKRVNEIYKHGKPLQKK-------VANVFLETFLFYSGFYTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNF----------GIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 +AE + I+RDES+H + G++ Q +++N W + +L+E Sbjct: 180 VAEIIKLIIRDESVHGTYIGYKFQRGFNGLEEQEQDELKN---WMYD-------LLYELY 229 Query: 270 LLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 E Y E P G+ + ++++ AN+ +G+ PLF T N Sbjct: 230 ENEEKYTEELYDPLGW----TEDVKIFLRYNANKALMNLGMNPLFPDTAN 275 >gi|148994532|ref|ZP_01823712.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP9-BS68] gi|147927202|gb|EDK78238.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP9-BS68] Length = 319 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 30/276 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDGVGW-TEEVKTFLRYNANKALMNMGQDPLF 270 >gi|310722637|ref|YP_003969460.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5] gi|306021480|gb|ADM80014.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5] Length = 376 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 67/297 (22%), Positives = 121/297 (40%), Gaps = 35/297 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D+ + + LT+ E+ + +NL + + +S+ L +S+ Sbjct: 48 WRPEEVDLSKDMIDF---SRLTEAEQYVFTQNLKYQSLLDSVQGRAPNLTFLPMVSDIAL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY-------- 165 ++ +F E +HS ++ +I+ +L ++ E+F+ I +A QY Sbjct: 105 ETWITTWSFSETIHSRSYTHIMRNLYVNPTEVFDRIMLDEKIMKRATAVTQYYDDLIREK 164 Query: 166 --TQTLSSPSFTTG------TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 L F G TK + +L V E + FY FA S M Sbjct: 165 RTYDMLCCQVFPAGLQVQQLTKVKEALYLAKHAVN--ALEAIRFYVSFACTFSFAERGLM 222 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKI-----ENPHL--WTKEFQQKSRTMLHEATL 270 G A+ + I RDE LHL QI+ ++P + K + K+ + +A Sbjct: 223 EGNAKIMKLIARDEQLHLK---GTQYQIRTWQNGEDDPEMVDIAKRLESKAVQIFLDAAE 279 Query: 271 LEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGL---EPLFKYTENPFPWM 323 E +A + + + + L+ S Y+ ++ R GL E L +++P PW+ Sbjct: 280 QEKEWARDLLSRVSIPSLSLQSMLDYIDYLTASRMQSAGLPIPEELNVPSKHPLPWI 336 >gi|328543067|ref|YP_004303176.1| ribonucleoside-diphosphate reductase, beta subunit [polymorphum gilvum SL003B-26A1] gi|326412813|gb|ADZ69876.1| Ribonucleoside-diphosphate reductase, beta subunit [Polymorphum gilvum SL003B-26A1] Length = 325 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/269 (19%), Positives = 112/269 (41%), Gaps = 32/269 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + + + L + ++++ ++A P Sbjct: 34 NFWLPEKVPLSNDIPSWATLTAAEQQLTIRVFTGLTLLDTIQNMIGAPALMA---DAITP 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 L AF EAVH+ ++ + ++L E+ + +R W+ + Q + Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSVFSTL-CRTAEVDDAFR----------WSAENPQLQAK 139 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 DA L+ + V E FY+GF + K+ A+ + I+RDE Sbjct: 140 SRLILNEYDASGTPLKKK-IASVFLESFLFYSGFYLPMHWSSRAKLTNTADLIRLIIRDE 198 Query: 232 SLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 ++H G++ +++ + +E + + +++ + +E Y E++ G Sbjct: 199 AVHGYYIGYKFQRGLETVSEAE-------RQEIKDFAFSLMFDLYAIEAKYT-ESLCDG- 249 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VGL + ++ + AN+ +G E LF Sbjct: 250 VGLT-EDVKHFLHYNANKALMNLGYEALF 277 >gi|219847941|ref|YP_002462374.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus aggregans DSM 9485] gi|219542200|gb|ACL23938.1| ribonucleotide reductase [Chloroflexus aggregans DSM 9485] Length = 297 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 17/236 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI--YRHLSNP 111 W P+ + D+ W N L+D+ER ++ R F + E V +++ I H Sbjct: 32 WNPSLLDFSRDIDDW---NRLSDEERDLLLRLTALFQAGEEAVTLDLLPLIKAIAHDGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL-QYTQTLS 170 E +L FEEA H+ F I+ + + +L + PS A AL + Q L Sbjct: 89 EEELFLTTFLFEEAKHTDFFARFISEVARVDPDLSRYH--TPSYRALIYDALPRAMQRLE 146 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMR 229 +A + ++ EG+ TG+ + L N M G+ E + + + Sbjct: 147 HDPSPFNLAEAS-------LTYNMIVEGVLAETGYHGYFTILDTHNLMPGVREGIRLLKQ 199 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYAHETMPKGF 284 DES H+ +GI +++++ + +W ++ + ++H ++ EI +++TMP G Sbjct: 200 DESRHIAYGIYLLSRLIAADRQIWDHIVERMNELVIHALGVIDEIFTSYDTMPFGL 255 >gi|332362636|gb|EGJ40434.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK49] Length = 332 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 64/276 (23%), Positives = 120/276 (43%), Gaps = 30/276 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 34 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 87 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159 A+ + + F E+VH+ ++ I ++L N E+ I A Sbjct: 88 DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 139 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT A ++ + +F+ E FY+GF L NK+ Sbjct: 140 NPYLQKKAEIINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 192 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L E Q+K + +++ TL E + Sbjct: 193 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 248 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG + ++++ AN+ +G +PLF Sbjct: 249 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 283 >gi|323359290|ref|YP_004225686.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum StLB037] gi|323275661|dbj|BAJ75806.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum StLB037] Length = 324 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 112/273 (41%), Gaps = 37/273 (13%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W N LT +E+ + R +++ +++ Sbjct: 32 VNNFWLPEKVPLSNDIQSW---NTLTPEEQTLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L + E F E + KA + Y + Sbjct: 89 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSTENEFLQKKARIVMDYYR 148 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 149 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMHWSSRAKLTNTADLIRLI 193 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G++ ++Q + + + + + ++L+E E+ Y Sbjct: 194 IRDEAVHGYYIGYKFQRGLETVDQARRD-------DIKDYTFSLLYELYDNEVGYTQSLY 246 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VGL + ++++ + AN+ +G E +F Sbjct: 247 DA--VGL-SEDVKKFLHYNANKALMNLGYEAMF 276 >gi|270292678|ref|ZP_06198889.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus sp. M143] gi|270278657|gb|EFA24503.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus sp. M143] Length = 322 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 63/277 (22%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + + V E FY+GF L NK+ Sbjct: 127 NPYLQRKAEIINEIYLNGSPLEKK-------IASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|297622357|ref|YP_003703791.1| ribonucleotide reductase [Truepera radiovictrix DSM 17093] gi|297163537|gb|ADI13248.1| ribonucleotide reductase [Truepera radiovictrix DSM 17093] Length = 324 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/303 (23%), Positives = 115/303 (37%), Gaps = 25/303 (8%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +++W+ TE + +D+ ++ G+ + ER ++ R L A E V +YR Sbjct: 26 HSYWLHTEYNLTEDVNDYRV--GVREAERQVLTRALLAIAQVEVAV-KTFWGDLYRKFPK 82 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 PE A E H + +++ LGL + F E P++ + L Sbjct: 83 PEVGAVGYTFAESEVRHQDAYAHLLELLGLTDA--FARLHEAPALGER----LAVLDAHL 136 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG----IAEQYQY 226 P G DA L FV +V F Q L L N+ G +A + Sbjct: 137 VPVRQDGRDDAFSVALFSAFVEHVSL--------FGQFLILKAFNQATGRFKGVANIVEA 188 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 ++E +H FG ++ ++ E P + F + R +A E A G + Sbjct: 189 TSKEEQIHGMFGYKLVETLRRERPEWFGAAFSARLRAACVDAERAERAILRWICEAGALP 248 Query: 287 -LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTE 342 L E +MQ N +G PL++ P W E + K+ +FF R T Sbjct: 249 FLPLAQLEAFMQARFNGALVALGEAPLWEVDPALLAPTRWFEEELLSSKQVDFFHKRPTA 308 Query: 343 YQQ 345 Y + Sbjct: 309 YAK 311 >gi|254489413|ref|ZP_05102616.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp. GAI101] gi|214041920|gb|EEB82560.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp. GAI101] Length = 324 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 55/264 (20%), Positives = 104/264 (39%), Gaps = 22/264 (8%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + L DER + R L +++ ++ P Sbjct: 34 NFWLPEKVPLSNDVQSWAT---LKPDERTLTIRVLTGLTLLDTIQNTVGAPSLMPDAQTP 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L + + F + P + AK+ LQ Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTLCSTKEVDDAFRWSEDNPHLQAKSRLILQEYNAT 150 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + P + V E FY+GF + K+ A+ + I+R Sbjct: 151 ADPLKRK--------------IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 196 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE++H + + + P + + +++ + +E Y E +GL Sbjct: 197 DEAIHGYYIGYKFQRATEQLPQADRDALKDFAFSLMFDLYEIEAHYTAELYDD--LGLTE 254 Query: 290 PSCEQYMQFIANRRCHQIGLEPLF 313 + ++ + AN+ +G E LF Sbjct: 255 -DVKAFLHYNANKALQNLGYEALF 277 >gi|296140644|ref|YP_003647887.1| ribonucleoside-diphosphate reductase [Tsukamurella paurometabola DSM 20162] gi|296028778|gb|ADG79548.1| Ribonucleoside-diphosphate reductase [Tsukamurella paurometabola DSM 20162] Length = 334 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/265 (21%), Positives = 110/265 (41%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LTD E+ + R +++ +++ + Sbjct: 42 TGNFWLPEKVPVSNDIPSWGT---LTDYEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAT 98 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L AF E+VH+ ++ I ++L E+ + +R W+ + Q Sbjct: 99 TPHEEAVLTNIAFMESVHAKSYSSIFSTL-CSTREIDDAFR----------WSEENEQLQ 147 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + V + E FY+GF + K+ A+ + I+R Sbjct: 148 RKAQIVMDFYRGDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIR 205 Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + G ++ E+P +E + + +L E E Y + VGL Sbjct: 206 DEAVHGYYIGYKYQRGLETESPQR-REELKDYTFDLLMELYANEEDYTESLYDE--VGL- 261 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 + ++++++ AN+ +G E LF Sbjct: 262 SEDVKKFLRYNANKALMNLGYEALF 286 >gi|314121808|ref|YP_004063927.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage vB_EcoM-VR7] gi|313151565|gb|ADR32621.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage vB_EcoM-VR7] Length = 392 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 67/311 (21%), Positives = 133/311 (42%), Gaps = 39/311 (12%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L + ++ + NL + + +S+ A+ +S+P Sbjct: 48 WRPEEVNLMMDGAQF---NKLPEHQQNIFTNNLKYQSLLDSIQGRAPAAALAALVSDPSL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-----------NWA 162 ++ F E +HS ++ +I+ +L D ++F+ +I +A N Sbjct: 105 DTWIQTWTFSETIHSRSYTHIMRNLYTDPAKVFDEILLDDAIMKRAESIGYYYDDVLNKT 164 Query: 163 LQYTQTLSSPSFTTGTKDADQE--------------FLQDLFV-FYVV--FEGMWFYTGF 205 Q+ ++ T + DQ ++ L++ +V+ E + FY F Sbjct: 165 RQWQNQIAFVELAKETPEVDQRLERAIKQEAIAKRALMKSLYLCLHVINALEAIRFYVSF 224 Query: 206 AQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTK---EFQQK 260 A + + + M G A+ ++I RDE LHL ++ Q++ + W K E + + Sbjct: 225 ACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYILRQLQTGVDGDEWVKIAHECEAE 284 Query: 261 SRTMLHEATLLEIAYA-HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL--EPLFKYTE 317 + + E E +A H G GL+ +++ ++ R Q GL E + + T+ Sbjct: 285 AAAIFMEVNRQEKEWAVHLFKDGGLPGLSVEILNRFIDYLTVSRMKQCGLPCEIVLESTK 344 Query: 318 NPFPWMSEVID 328 +P PW+ E ++ Sbjct: 345 HPIPWIREYLN 355 >gi|199598384|ref|ZP_03211803.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus HN001] gi|199590703|gb|EDY98790.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus HN001] Length = 326 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 23/195 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 ++ +++ + L F E+VH+ ++ I ++L N E+ I Sbjct: 75 ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL--------NTPAEIDEIFDWTNH 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + G+ A Q+ + +F+ E FY+GF L NK+ Sbjct: 127 NEHLQYKANKINDIYHNGS--ALQKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLTN 179 Query: 220 IAEQYQYIMRDESLH 234 +AE + I+RDES+H Sbjct: 180 VAEIIKLIIRDESVH 194 >gi|307704819|ref|ZP_07641714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus mitis SK597] gi|307708708|ref|ZP_07645171.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus mitis NCTC 12261] gi|307709353|ref|ZP_07645811.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis SK564] gi|307615282|gb|EFN94492.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus mitis NCTC 12261] gi|307619936|gb|EFN99054.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis SK564] gi|307621648|gb|EFO00690.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus mitis SK597] Length = 320 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNVEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + V V E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|9629622|ref|NP_044898.1| ribonucleotide reductase subunit 2 [Murid herpesvirus 4] gi|6625623|gb|AAF19324.1|AF105037_56 60 [murid herpesvirus 4] gi|1850859|emb|CAA70275.1| ribonucleotide reductase, small subunit [Murid herpesvirus 4] gi|2317992|gb|AAB66450.1| ribonucleotide reductase small [murid herpesvirus 4] Length = 305 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 70/304 (23%), Positives = 120/304 (39%), Gaps = 42/304 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W P+++P+ D+A L + +R K F +E LV NI + + + Sbjct: 26 NMWFPSQIPLSSDVA---GIAQLNETDREFYKFLFVFLGLAERLVNFNIE-DLVKEFNCH 81 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV------PSITAKANWALQY 165 + Y Q E +H + I+ G++ + P++ AK +W Sbjct: 82 DATHYYAEQMAMENIHGKVYANILQLFF--NGDMMKLKEYAVKVVADPTLKAKLDW---- 135 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQY 224 L + T T+ + + +++ EG++F + F I SL R M+ GI Sbjct: 136 ---LHTRVKNTKTR-------AEKVLIFLLIEGIFFISSFYSI-SLFRVRGMLNGICLAN 184 Query: 225 QYIMRDESLHLNFGIDVINQI--KIENPH-LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 YI +DE LH + N + E P W K Q++ +E+ Y+ Sbjct: 185 DYISKDELLHTRAAAVLYNSLIPAKERPDAAWIKRLFQEA---------VEVEYSFIAAK 235 Query: 282 KGFVGLNAPS-CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 V L P ++++Q +R IG+EP++ + P K NFFE Sbjct: 236 SKNVTLVVPGEIKKFLQATCDRILQSIGVEPIYG-SHAPVTCPLSYNGCIKSVNFFEREG 294 Query: 341 TEYQ 344 T+Y Sbjct: 295 TDYS 298 >gi|258508470|ref|YP_003171221.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus GG] gi|257148397|emb|CAR87370.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus rhamnosus GG] gi|259649782|dbj|BAI41944.1| ribonucleotide reductase beta subunit [Lactobacillus rhamnosus GG] Length = 326 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 23/195 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 ++ +++ + L F E+VH+ ++ I ++L N E+ I Sbjct: 75 ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL--------NTPAEIDEIFDWTNH 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + G+ A Q+ + +F+ E FY+GF L NK+ Sbjct: 127 NEHLQYKANKINDIYHNGS--ALQKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLTN 179 Query: 220 IAEQYQYIMRDESLH 234 +AE + I+RDES+H Sbjct: 180 VAEIIKLIIRDESVH 194 >gi|229552273|ref|ZP_04440998.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus LMS2-1] gi|258539683|ref|YP_003174182.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus Lc 705] gi|229314345|gb|EEN80318.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus LMS2-1] gi|257151359|emb|CAR90331.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus rhamnosus Lc 705] Length = 326 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 23/195 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 ++ +++ + L F E+VH+ ++ I ++L N E+ I Sbjct: 75 ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL--------NTPAEIDEIFDWTNH 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + G+ A Q+ + +F+ E FY+GF L NK+ Sbjct: 127 NEHLQYKANKINDIYHNGS--ALQKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLTN 179 Query: 220 IAEQYQYIMRDESLH 234 +AE + I+RDES+H Sbjct: 180 VAEIIKLIIRDESVH 194 >gi|203454817|ref|YP_002225133.1| gp256 [Mycobacterium phage Myrna] gi|197311865|gb|ACH62223.1| gp256 [Mycobacterium phage Myrna] Length = 322 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/288 (19%), Positives = 114/288 (39%), Gaps = 26/288 (9%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+++ K W + NN W+P ++P+ +D+ W LT++ERL+ R Sbjct: 15 NRVIDEKDAEVWNRL---TNNFWLPEKIPVSNDVQSWHQ---LTEEERLITMRVFTGLTM 68 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 +++ +++ P AF E+VH+ ++ I ++L Sbjct: 69 LDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHARSYSNIFSTLC-----------S 117 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 I A W+ + + D + V + EG FY+GF + Sbjct: 118 TKEIDAAFRWSEENANLQKKAEIVLSYYNGDDPLKRK--VASTLLEGFLFYSGFYLPMFW 175 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 K+ A+ + I+RDE++H + I Q +E TK QQ+ + +E L Sbjct: 176 SSRGKLTNTADMIRLIIRDEAVH-GYYIGYKFQKGLEKE---TKARQQELKDYTYEL-LF 230 Query: 272 EIAYAHETMPKGFVGLNAPS--CEQYMQFIANRRCHQIGLEPLFKYTE 317 E+ + + + ++++++ N+ +G + LF ++ Sbjct: 231 ELFDNEQEYTQDLYDATGQTEDVKKFLRYNGNKALQNLGYDALFSRSD 278 >gi|260426338|ref|ZP_05780317.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp. SE45] gi|260420830|gb|EEX14081.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp. SE45] Length = 324 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 24/265 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT +E+ + R +++ A+ P Sbjct: 34 NFWLPEKVPLSNDVPSWAT---LTPEEQRLTIRVFTGLTLLDTIQNAVGAPAMMPDAQTP 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L + E F E P + AKA L Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFRWSDENPHLQAKARAILG----- 145 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 ++ G ++ V V E FY+GF + K+ A+ + I+R Sbjct: 146 ---TYAPGADPLKRK------VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 196 Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + G ++ E +E + + +L E +E Y E +GL Sbjct: 197 DEAVHGYYIGYKFQRAMERETAER-RQELKDYAFGLLFELYEIEGHYTEELYDD--LGLT 253 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 + ++ + AN+ +G E LF Sbjct: 254 E-EVKSFLHYNANKALQNLGFEALF 277 >gi|294955280|ref|XP_002788462.1| ribonucleoside-diphosphate reductase small chain, putative [Perkinsus marinus ATCC 50983] gi|239903931|gb|EER20258.1| ribonucleoside-diphosphate reductase small chain, putative [Perkinsus marinus ATCC 50983] Length = 157 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 + A +E + + +P G +G+NA +Y++F+A+R +G ++ + NPF WM+ Sbjct: 36 NSAVNVEREFITDALPVGLIGMNAELMGRYIEFVADRLLVALGYAKIYN-SANPFDWMT- 93 Query: 326 VIDLKKEKNFFETRV 340 +I L+ + NFFE RV Sbjct: 94 MISLQGKTNFFEKRV 108 >gi|327468920|gb|EGF14392.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK330] Length = 319 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 64/276 (23%), Positives = 119/276 (43%), Gaps = 30/276 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KA 159 A+ + + F E+VH+ ++ I ++L N E+ I A Sbjct: 75 DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKSEIDEIFAWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT A ++ + +F+ E FY+GF L NK+ Sbjct: 127 NPYLQKKAEIINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L E Q K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLAFNELPEDE-QNKLKEWMYDLLYTLYENEEGY 235 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|116326446|ref|YP_803166.1| ribonucleotide reductase B subunit [Enterobacteria phage RB32] gi|32709425|gb|AAP86731.1| NrdB [Enterobacteria phage RB32] gi|115344039|gb|ABI95048.1| ribonucleotide reductase B subunit [Enterobacteria phage RB32] Length = 392 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 72/311 (23%), Positives = 134/311 (43%), Gaps = 39/311 (12%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A + N L ++ + NL + + +S+ + +S+P Sbjct: 48 WRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSL 104 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---- 169 ++ F E +HS ++ +I+ +L D ++F+ +I +A +Y + Sbjct: 105 DTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLVKT 164 Query: 170 ----SSPSFTTGTK---DAD--------QE------FLQDLFV-FYVV--FEGMWFYTGF 205 ++ F K DAD QE ++ L++ +V+ E + FY F Sbjct: 165 REWENAKEFVELAKESPDADFRLNRAIKQEAEAKCALMKSLYLCLHVINALEAIRFYVSF 224 Query: 206 AQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTK---EFQQK 260 A + + + M G A+ ++I RDE LHL +I Q++ + W K E +Q+ Sbjct: 225 ACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQE 284 Query: 261 SRTMLHEATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TE 317 + + E E +A G V GLN S ++ ++ R Q GL P+ + Sbjct: 285 AVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVK 344 Query: 318 NPFPWMSEVID 328 +P+PW+ E ++ Sbjct: 345 HPYPWIREYLN 355 >gi|309800432|ref|ZP_07694593.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus infantis SK1302] gi|308115948|gb|EFO53463.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus infantis SK1302] Length = 319 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 121/277 (43%), Gaps = 33/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P + + F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRADIRTPH-EEAVYNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFEWTNT 125 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT + V V E FY+GF L NK+ Sbjct: 126 NPYLQKKAEIINEIYLNGTPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 178 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L E Q+K + +++ TL E + Sbjct: 179 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPEDE-QEKLKDWMYDLLYTLYENEEGY 234 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 235 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 269 >gi|319408170|emb|CBI81823.1| ribonucleoside-diphosphate reductase beta chain [Bartonella schoenbuchensis R1] Length = 324 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 57/269 (21%), Positives = 109/269 (40%), Gaps = 33/269 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W S LT++ER + R +++ +++ Sbjct: 34 NFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAISLMADAITE 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 L AF EAVH+ ++ I ++L E+ + +R ++ N LQ TL Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTL-CSTAEVDDAFR-----WSEENANLQKKATLVL 144 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + + + + E FY+GF + K+ A+ + I+RDE Sbjct: 145 ERYEASDPLKKK-------IASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDE 197 Query: 232 SLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 ++H G +++ K +E + + ML + +E Y + Sbjct: 198 AVHGYYVGYKFQLGFAKLDEAK-------KQEIKDFAFNMLFDLYSIECKYTEDLYDA-- 248 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +GL + ++ + AN+ +G EPLF Sbjct: 249 IGLT-EDVKVFIHYNANKALMNLGFEPLF 276 >gi|329575046|gb|EGG56598.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1467] Length = 212 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 23/195 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L+D E+ + G +++ + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + P L F E+VH+ ++ I ++L N +E+ I Sbjct: 75 DQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKKEIDDIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + GT + + V E FY+GF L NK+ Sbjct: 127 NKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLH 234 +AE + I+RDES+H Sbjct: 180 VAEIIKLIIRDESVH 194 >gi|270291189|ref|ZP_06197412.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus acidilactici 7_4] gi|304385474|ref|ZP_07367819.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus acidilactici DSM 20284] gi|270280585|gb|EFA26420.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus acidilactici 7_4] gi|304328681|gb|EFL95902.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus acidilactici DSM 20284] Length = 317 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 67/289 (23%), Positives = 117/289 (40%), Gaps = 47/289 (16%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL+ W+ L +D + ++ G ++L + + + Sbjct: 20 TWEK---LTEQFWLDTRIPISNDLSDWRE---LDEDHQWVVGHVFGGLTLLDTLQSQDGM 73 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 A+ + + P L F E+VH+ ++ I +L N E+ I Sbjct: 74 AALRKDVRTPHETAVLNNIQFMESVHAKSYSSIFETL--------NTPTEIDEI------ 119 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLF----------VFYVVFEGMWFYTGFAQILSL 211 + + S TK F+ DL+ + V E FY+GF L Sbjct: 120 ---FEWSDSEEFLQNKTK-----FIYDLYHDDGHPLKKKISSVFLETFLFYSGFFTPLYY 171 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM---LHEA 268 NK+ +AE + I+RDES+H G + + ++ L E Q+ M L++ Sbjct: 172 LGHNKLNNVAEIIKLILRDESVH---GTYIGYKFQLGMKDLGENEQQELKDWMYNFLYDL 228 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 E Y H+ + VG + ++ AN+ +G +PLF TE Sbjct: 229 YANEEKYVHKVYDQ--VGW-TEEVLTFTRYNANKALMNLGQDPLFPDTE 274 >gi|229818600|ref|YP_002880126.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM 12333] gi|229564513|gb|ACQ78364.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM 12333] Length = 326 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 64/304 (21%), Positives = 126/304 (41%), Gaps = 30/304 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +D+ W + LTD E+ + R +++ +++ Sbjct: 34 VNNFWLPEKVPVSNDIPSWGT---LTDVEKTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 90 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166 P AF E+VH+ ++ I ++L E+ + +R E ++ KA ++Y Sbjct: 91 TPHEEAVYTNIAFMESVHAKSYSSIFSTL-CSTREIDDAFRWSEENSNLQRKAEIVMEYY 149 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + D+ + V + E FY+GF + K+ A+ + Sbjct: 150 R-------------GDEPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRL 194 Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 I+RDE++H + G ++ P +E + + +L E E+ Y + + V Sbjct: 195 IIRDEAVHGYYIGYKFQRGLEALAPEQ-REEIKSYTYELLFELYENEVQYTEDLYDE--V 251 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTE 342 GL ++++++ AN+ +G E LF E NP + + + +FF + Sbjct: 252 GLTE-DVKKFLRYNANKALMNLGYEALFPKDETDVNPAILAALSPNADENHDFFSGSGSS 310 Query: 343 YQQG 346 Y G Sbjct: 311 YVIG 314 >gi|254471227|ref|ZP_05084629.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio sp. JE062] gi|211959373|gb|EEA94571.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio sp. JE062] Length = 325 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 69/304 (22%), Positives = 118/304 (38%), Gaps = 29/304 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W S LT +E+ + R +++ A+ Sbjct: 32 TSNFWLPEKVPLSNDVQSWAS---LTPEEQQLTIRVFTGLTLLDTIQNTVGAPALMADAV 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P L AF EAVH+ ++ + ++L + + F E + AK+ L+ Sbjct: 89 TPHEEAVLTNIAFMEAVHARSYSSVFSTLCRTAEVDDAFRWSEENEFLQAKSRLILEEYN 148 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 SSP K A V E FY+GF + K+ A+ + I Sbjct: 149 ATSSP---LKKKIAS-----------VFLESFLFYSGFYLPMHWSSRAKLTNTADLIRLI 194 Query: 228 MRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFV 285 +RDE++H + I Q +E E + + T+L + LE Y + P G Sbjct: 195 IRDEAVH-GYYIGYKFQRGLERLSEAERTEIKDFAFTLLFDLYDLETKYTEDLYDPLGLT 253 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTE 342 + ++ + N+ +G E LF T NP S + + +FF + Sbjct: 254 ----EDVKHFLHYNGNKALQNLGFEGLFPETICQVNPAIMASLSPNADENHDFFSGSGSS 309 Query: 343 YQQG 346 Y G Sbjct: 310 YVIG 313 >gi|111023403|ref|YP_706375.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus jostii RHA1] gi|110822933|gb|ABG98217.1| ribonucleotide reductase [Rhodococcus jostii RHA1] Length = 321 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 64/309 (20%), Positives = 125/309 (40%), Gaps = 40/309 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ +++ Sbjct: 29 VGNFWLPEKVPVSNDIPSWGT---LTPQEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 85 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L D + F E P++ KA + Y Q Sbjct: 86 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFRWSEENPNLQRKAEIVMDYYQ 145 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D+ + V + E FY+GF + K+ A+ + I Sbjct: 146 -------------GDEPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 190 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G++ + + + ++ +T E +L E E+ Y + Sbjct: 191 IRDEAVHGYYIGYKYQKGLEQLTEAERDDLKNYTFE-------LLFELYDNEVDYTQDLY 243 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFE 337 + VGL ++++++ AN+ +G E LF E NP + + + +FF Sbjct: 244 DE--VGLTE-DVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSALSPNADENHDFFS 300 Query: 338 TRVTEYQQG 346 + Y G Sbjct: 301 GSGSSYVIG 309 >gi|226305840|ref|YP_002765800.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus erythropolis PR4] gi|229493405|ref|ZP_04387194.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus erythropolis SK121] gi|226184957|dbj|BAH33061.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus erythropolis PR4] gi|229319721|gb|EEN85553.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus erythropolis SK121] Length = 321 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 66/311 (21%), Positives = 124/311 (39%), Gaps = 31/311 (9%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 W++ +S N W+P +VP+ +D+ W + LT E+ + R +++ Sbjct: 24 VWDRLVS---NFWLPEKVPVSNDIPSWGT---LTAQEQQLTMRVFTGLTLLDTIQGTVGA 77 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKA 159 +++ P AF E+VH+ ++ I ++L D + F E P++ KA Sbjct: 78 VSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTPDIDDAFRWSEENPNLQRKA 137 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 L Y S + + E FY+GF + K+ Sbjct: 138 QIVLDYYNGESPLKRKVAS---------------TLLESFLFYSGFYLPMYWSSRAKLTN 182 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 A+ + I+RDE++H + I Q +E +E + + +L E E+ Y + Sbjct: 183 TADLIRLIIRDEAVH-GYYIGYKYQKGLEQLTEAEREELKNYTFELLFELYENEVDYTQD 241 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNF 335 VGL ++++++ AN+ + +G E LF E NP + + + +F Sbjct: 242 LYDG--VGL-TEDVKKFLRYNANKALNNLGYEGLFPKDETDVNPAILSALSPNADENHDF 298 Query: 336 FETRVTEYQQG 346 F + Y G Sbjct: 299 FSGSGSSYVIG 309 >gi|327458665|gb|EGF05013.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1057] Length = 319 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 62/276 (22%), Positives = 120/276 (43%), Gaps = 30/276 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + + F E+VH+ ++ I ++L E+F+ P + KA Sbjct: 75 DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFDWTNTNPYLQKKA 134 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 + + + GT A ++ + +F+ E FY+GF L NK+ Sbjct: 135 E--------IINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLAFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|194015457|ref|ZP_03054073.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus pumilus ATCC 7061] gi|194012861|gb|EDW22427.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus pumilus ATCC 7061] Length = 329 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 65/266 (24%), Positives = 104/266 (39%), Gaps = 24/266 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + DL WK LT ER + L ++ N + AI H+ + Sbjct: 35 WLPEEISLNGDLLAWKD---LTPAERDTYMKVLAGLTLLDTEQGNTGMPAIMAHVDGHQR 91 Query: 114 RQYL-LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA-----LQYTQ 167 + L E AVH+ ++ I +L E +ITA W LQ Sbjct: 92 KAVLNFMAMMENAVHAKSYSNIFLTLAPSE-----------TITAVFEWVKENRYLQRKA 140 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 L + + K D L V V E FY+GF L +M+ E I Sbjct: 141 KLITDLYRD-IKAGDDISLYKAMVASVYLESFLFYSGFYYPLYFYGQGRMMQSGEIINLI 199 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 +RDE++H + + +I + + S +L E E+AY + G VGL Sbjct: 200 IRDEAIHGVYVGLLAQEIYNRQTDDVRADLHEWSLGLLTELYENEVAYTDDVY--GAVGL 257 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313 A + ++++ AN+ +G + F Sbjct: 258 -AHDVKAFVRYNANKALMNLGFDAHF 282 >gi|188533084|ref|YP_001906881.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia tasmaniensis Et1/99] gi|188028126|emb|CAO95983.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia tasmaniensis Et1/99] Length = 319 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 71/304 (23%), Positives = 130/304 (42%), Gaps = 30/304 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHL 108 +N W+P +VP+ +D+ W S N ++++L I+ G + + N + A+ Sbjct: 27 TSNFWLPEKVPLSNDIPAWNSLNA--EEQQLTIRVFTGL--TLLDTIQNTLGAPALMADA 82 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYT 166 P + +F EAVH+ ++ I ++L D + E + AKA LQ+ Sbjct: 83 LTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSEENAPLQAKAQIILQHY 142 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 DA ++ + +F+ E FY+GF + K+ A+ + Sbjct: 143 Y----------HDDALKKKIASVFL-----ESFLFYSGFYLPMYWSSRGKLTNTADLIRL 187 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 I++DE++H + I Q +E K E QQ + +L E E+AY E + G V Sbjct: 188 IIKDEAVH-GYYIGYKYQKSLEKETAPRKEELQQFAIDLLLELYENEVAYT-EALYAG-V 244 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEKN--FFETRVTE 342 G ++++ + AN+ +G + LF Y + P + + ++N FF + Sbjct: 245 GWQ-EDVKKFLHYNANKALMNLGYQALFPSYMTDVNPAILAALSPNADENHDFFSGSGSS 303 Query: 343 YQQG 346 Y G Sbjct: 304 YVMG 307 >gi|319645694|ref|ZP_07999925.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp. BT1B_CT2] gi|317392241|gb|EFV73037.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp. BT1B_CT2] Length = 330 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 68/298 (22%), Positives = 118/298 (39%), Gaps = 20/298 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + DL WK L D E+ + L ++ N + I H+ + Sbjct: 33 WLPEEISLNGDLLTWKH---LGDKEKDTYMKVLAGLTLLDTEQGNTGMPTIAEHVEGHQR 89 Query: 114 RQYLLRQAF-EEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLS 170 + L A E AVH+ ++ I +L E ELF K N LQ + Sbjct: 90 KAVLNFMAMMENAVHAKSYSNIFMTLAPTEKITELFEW--------VKTNRYLQRKAAII 141 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + + D L V V E FY+GF L K++ E I+RD Sbjct: 142 GGLYN-AIEAGDDISLYKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQCGEIINLIIRD 200 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E++H + + +I + + + +++ E EIAY E + VGL Sbjct: 201 EAIHGVYVGLLAQEIYNKKDEGTQHRLEMFALSLIEELYRNEIAYTEELYDQ--VGL-TH 257 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++++++ N+ +G P F+ E NP ++ + K +FF + Y++ Sbjct: 258 DVKKFIRYNGNKALSNLGFNPYFEEEEINPIV-LNGLNTKTKSHDFFSMKGNGYKKAT 314 >gi|301066519|ref|YP_003788542.1| ribonucleotide reductase subunit beta [Lactobacillus casei str. Zhang] gi|300438926|gb|ADK18692.1| Ribonucleotide reductase, beta subunit [Lactobacillus casei str. Zhang] Length = 326 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 23/195 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+S L DE+ ++ G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 ++ +++ + L F E+VH+ ++ I ++L N E+ I Sbjct: 75 ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL--------NTPAEIDEIFDWTNH 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + G+ A Q+ + +F+ E FY+GF L NK+ Sbjct: 127 NEHLQYKANKINDIYHNGS--ALQKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLTN 179 Query: 220 IAEQYQYIMRDESLH 234 +AE + I+RDES+H Sbjct: 180 VAEIIKLIIRDESVH 194 >gi|116494955|ref|YP_806689.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus casei ATCC 334] gi|191638466|ref|YP_001987632.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus casei BL23] gi|227535043|ref|ZP_03965092.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631445|ref|ZP_04674476.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116105105|gb|ABJ70247.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactobacillus casei ATCC 334] gi|190712768|emb|CAQ66774.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus casei BL23] gi|227187358|gb|EEI67425.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525910|gb|EEQ64911.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327382498|gb|AEA53974.1| hypothetical protein LC2W_1641 [Lactobacillus casei LC2W] gi|327385696|gb|AEA57170.1| hypothetical protein LCBD_1674 [Lactobacillus casei BD-II] Length = 326 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 23/195 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+S L DE+ ++ G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 ++ +++ + L F E+VH+ ++ I ++L N E+ I Sbjct: 75 ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL--------NTPAEIDEIFDWTNH 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + G+ A Q+ + +F+ E FY+GF L NK+ Sbjct: 127 NEHLQYKANKINDIYHNGS--ALQKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLTN 179 Query: 220 IAEQYQYIMRDESLH 234 +AE + I+RDES+H Sbjct: 180 VAEIIKLIIRDESVH 194 >gi|226365904|ref|YP_002783687.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus opacus B4] gi|226244394|dbj|BAH54742.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus opacus B4] Length = 321 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 64/309 (20%), Positives = 125/309 (40%), Gaps = 40/309 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ +++ Sbjct: 29 VGNFWLPEKVPVSNDIPSWGT---LTAQEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAI 85 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L D + F E P++ KA + Y Q Sbjct: 86 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFRWSEENPNLQRKAEIVMDYYQ 145 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D+ + V + E FY+GF + K+ A+ + I Sbjct: 146 -------------GDEPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 190 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G++ + + + ++ +T E +L E E+ Y + Sbjct: 191 IRDEAVHGYYIGYKYQKGLEQLTEAERDDLKNYTFE-------LLFELYDNEVDYTQDLY 243 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFE 337 + VGL ++++++ AN+ +G E LF E NP + + + +FF Sbjct: 244 DE--VGL-TEDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSALSPNADENHDFFS 300 Query: 338 TRVTEYQQG 346 + Y G Sbjct: 301 GSGSSYVIG 309 >gi|325694009|gb|EGD35927.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK150] Length = 319 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 62/276 (22%), Positives = 120/276 (43%), Gaps = 30/276 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + + F E+VH+ ++ I ++L E+F+ P + KA Sbjct: 75 DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFDWTNTNPYLQKKA 134 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 + + + GT A ++ + +F+ E FY+GF L NK+ Sbjct: 135 E--------IINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLAFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|322374376|ref|ZP_08048890.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C300] gi|321279876|gb|EFX56915.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C300] Length = 320 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 119/277 (42%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTMQSETGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + P F E+VH+ ++ I ++L N E+ I Sbjct: 75 QALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + V V E FY+GF L NK+ Sbjct: 127 NPYLQRKAEIINEIYLNGSPLEKK-------VASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQGKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|218709884|ref|YP_002417505.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio splendidus LGP32] gi|218322903|emb|CAV19080.1| Ribonucleoside-diphosphate reductase, beta subunit [Vibrio splendidus LGP32] Length = 323 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 60/266 (22%), Positives = 106/266 (39%), Gaps = 26/266 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ WK LT++E+ + R +++ A+ P Sbjct: 32 NFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGLTLLDTIQNTVGAPALMEDARTP 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ + ++L E F +E P + KA L Sbjct: 89 HEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFRWAQENPLLQKKAQIVLDDYLAE 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 P V V E FY+GF + K+ A+ + I+R Sbjct: 149 GDPLKKK--------------VASVFLESFLFYSGFYLPMHWSSRAKLTNTADLIRLIIR 194 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAHETMPKGFVGL 287 DE++H + I Q+ ++ ++E Q + + + +L EI + VGL Sbjct: 195 DEAIH-GYYIGYKFQLAYQS---LSEEEQARVKDEAYSLMFSLYEIETQYTESLYDPVGL 250 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313 + ++ + AN+ +G E LF Sbjct: 251 TE-DVKHFLHYNANKALMNLGFEALF 275 >gi|257870055|ref|ZP_05649708.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2] gi|257804219|gb|EEV33041.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2] Length = 322 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 64/280 (22%), Positives = 114/280 (40%), Gaps = 28/280 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L+D E+ + G +++ + + + Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGM 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + + P L F E+VH+ ++ I ++L N E+ I Sbjct: 76 DQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKAEIDEIFEWTNT 127 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + GT + + V E FY+GF L NK+ Sbjct: 128 NPYLQKKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 180 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I Q+ E P + + +L+E E Y E Sbjct: 181 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEEEQQRLKDWMYDLLYELYENEERYTEE 239 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 +G + ++++ AN+ +G +PLF T N Sbjct: 240 LYDA--IGW-TEEVKTFLRYNANKALMNLGQDPLFPDTAN 276 >gi|92112513|ref|YP_572441.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter salexigens DSM 3043] gi|91795603|gb|ABE57742.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Chromohalobacter salexigens DSM 3043] Length = 326 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 65/300 (21%), Positives = 115/300 (38%), Gaps = 26/300 (8%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D++ W N LT+ E+ + R +++ + P Sbjct: 36 NFWLPEKVPLSNDVSAW---NTLTEQEQTLTIRVFTGLTLLDTIQGTIGAPTLIEDAVTP 92 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 +F E+VH+ ++ I ++L D + + E P + KA L + Sbjct: 93 HEEAVFTNISFMESVHARSYSSIFSTLCATRDVDDAYRWSEENPHLQNKAELILNRYRM- 151 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D ++ V V E FY+GF + K+ A+ + I+R Sbjct: 152 ------------DDPLMRK--VASVFLESFLFYSGFYLPMYWASRGKLTNTADLIRLIIR 197 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE++H + Q +E + + +L E E+ Y VGL Sbjct: 198 DEAVHGYYIGYKFQQALARESAERQQEIKDATFDLLLELYDNEVHYTESLYDD--VGLTE 255 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKKEKN--FFETRVTEYQQG 346 + ++ + AN+ +G EPLF TE P + + E+N FF + Y G Sbjct: 256 -EVKAFLHYNANKALMNLGYEPLFPGATEAVNPAILAALSPGAEENHDFFSGSGSSYVIG 314 >gi|300741626|ref|ZP_07071647.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia dentocariosa M567] gi|300380811|gb|EFJ77373.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia dentocariosa M567] Length = 325 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 58/267 (21%), Positives = 113/267 (42%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ WK+ LT +E+ + R +++ +++ Sbjct: 33 TGNFWLPEKVPLSNDVPSWKT---LTAEEKELTMRVFTGLTLLDTIQGTVGAVSLLPDAV 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 AF E+VH+ ++ I ++L + + F E + KA L Y Sbjct: 90 TAHEEAVYTNIAFMESVHAKSYSSIFSTLSSTKEIDDAFRWASENEHLQKKAKIILAY-- 147 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 TG ++ V + E FY+GF + K+ A+ + I Sbjct: 148 -------YTGDDPLKKK------VASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLI 194 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + G + E+P E ++ + +L+E E+AY H ++ G VG Sbjct: 195 IRDEAVHGYYIGYKFQRGLAKESPER-QAELKEYTFNLLYELYENEVAYTH-SLYDG-VG 251 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 + ++++ + AN+ +G E +F Sbjct: 252 W-SEDVKKFLHYNANKALMNLGYEAMF 277 >gi|227494314|ref|ZP_03924630.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces coleocanis DSM 15436] gi|226832048|gb|EEH64431.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces coleocanis DSM 15436] Length = 322 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 55/266 (20%), Positives = 109/266 (40%), Gaps = 23/266 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W N L +E+ M + ++L +++ Sbjct: 30 TGNFWLPEKIPLSNDIPSW---NTLRPEEQDMTNKVFTNLTLLDTLQGTVGAISLISDAR 86 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L AF E+VH+ ++ I ++L L E+ ++R W+ + Q Sbjct: 87 TPHEEAVLTNIAFMESVHARSYSSIFSTL-LSTQEINEVFR----------WSEENEQVQ 135 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 AD + V + E FY+GF + K+ A+ + I+R Sbjct: 136 RKAEIVNSYYVADDPLKKK--VASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLIIR 193 Query: 230 DESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287 DE++H + I Q+ + E+ +E + + +L+E E + + P G Sbjct: 194 DEAVH-GYYIGYKYQLGVRESSEARQQELKDYTFDLLYELYDNEEQFTEDLYDPLGLT-- 250 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313 ++++++ AN+ +G E LF Sbjct: 251 --EDVKKFLRYNANKALMNLGYEALF 274 >gi|25027435|ref|NP_737489.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium efficiens YS-314] gi|259506419|ref|ZP_05749321.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium efficiens YS-314] gi|23492716|dbj|BAC17689.1| putative ribonucleotide reductase [Corynebacterium efficiens YS-314] gi|259165992|gb|EEW50546.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium efficiens YS-314] Length = 339 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 19/187 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W N +++ E L R +++ +++ + Sbjct: 46 TTNFWLPEKIPVSNDIQKW---NSMSEAEHLATLRVFTGLTLLDTIQGTVGAVSMIPDAT 102 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQ 167 L +F E+VH+ ++ I +L + E F R + KA L Y Q Sbjct: 103 THHEEAVLTNISFMESVHAKSYSNIFMTLASTPEINEAFRWSRHNEHLQYKAKRILDYYQ 162 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 S+P+ + V+ E + FY+GF L + K+ A+ + I Sbjct: 163 QDSTPARKK--------------IASVMLESLLFYSGFYLPLRMASIGKLTNTADVIRLI 208 Query: 228 MRDESLH 234 +RDE++H Sbjct: 209 IRDEAIH 215 >gi|253990649|ref|YP_003042005.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782099|emb|CAQ85263.1| ribonucleoside-diphosphate reductase 2 beta chain [Photorhabdus asymbiotica] Length = 319 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 59/264 (22%), Positives = 107/264 (40%), Gaps = 23/264 (8%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W N LT +E+ + R +++ A+ P Sbjct: 29 NFWLPEKVPLSNDIPSW---NTLTAEEKKLTIRVFTGLTLLDTIQNTVGAPALMEDALTP 85 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 + +F EAVH+ ++ I ++L L D + + ++ KA L Y Sbjct: 86 HEEAVMSNISFMEAVHARSYSSIFSTLCLTADVDDAYYWSENNLALQNKAKIILNYY--- 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D L+ V V E FY+GF + K+ A+ + I+R Sbjct: 143 -----------CDSHPLKKK-VASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE++H + Q + P+ KE + + ++L + EI Y + VG Sbjct: 191 DEAIHGYYIGYKFQQSLNKYPNSEKKEIKDFTFSLLFDLYENEIKYTEDLY--DIVGW-T 247 Query: 290 PSCEQYMQFIANRRCHQIGLEPLF 313 ++++ + AN+ +G E LF Sbjct: 248 EDVKKFLHYNANKALMNLGYEALF 271 >gi|328945482|gb|EGG39633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1087] Length = 319 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 62/276 (22%), Positives = 120/276 (43%), Gaps = 30/276 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSHKEKDLVGKVFGGLTLLDTLQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + + F E+VH+ ++ I ++L E+F+ P + KA Sbjct: 75 DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFDWTNTNPYLQKKA 134 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 + + + GT A ++ + +F+ E FY+GF L NK+ Sbjct: 135 E--------IINEIYLNGT--ALEKKIASVFL-----ETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNELPEDE-QEKLKEWMYDLLYTLYENEEGY 235 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDTVGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|328957625|ref|YP_004375011.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] gi|328673949|gb|AEB29995.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] Length = 320 Score = 52.4 bits (124), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 64/280 (22%), Positives = 119/280 (42%), Gaps = 28/280 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK + W T +P+ +DL W L +E+ M+ + G ++L + + V Sbjct: 21 TWEKLVEQF---WTDTRIPLSNDLDDWAR---LPKNEKDMVGKVFGGLTLLDTLQSQDGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKA 159 ++ + + F E++H+ ++ I ++L L+ E+F Sbjct: 75 QSLKQSIRTQHEEAVYNNIQFMESMHAKSYSAIFSTLNSKLEIDEIFQW--------TNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 + LQ + + + GT D ++ V V+ E FY+GF L NK+ Sbjct: 127 DELLQLKASTINDIYHNGT-DLQRK------VASVMLESFLFYSGFFAPLHYLGNNKLPN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I QI P +E + + +L + E+ YA Sbjct: 180 VAEIIKLILRDESVHGTY-IGYKFQIAFNQLPDDEKEEIKNWTYELLFKLYQNEVKYAEY 238 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + +G + ++++ AN+ +G +PLF T N Sbjct: 239 LYDE--IGW-TERVKVFLRYNANKALQNLGFDPLFPDTAN 275 >gi|325284717|ref|YP_004264180.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus MRP] gi|324316206|gb|ADY27320.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus MRP] Length = 348 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 122/289 (42%), Gaps = 38/289 (13%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER-LMIKRNLGFFASSESLVANNIV 101 +EKY S W P E+P+ +D +WKS L++ ER I + G A + + Sbjct: 25 YEKYTSQL---WFPEEIPLSNDAIVWKS---LSEAERWTYIHASAGLNALD--TLQGEVG 76 Query: 102 LAIYRHLSNPECRQYLLR-QAFEEAVHSHTFQ-----YIITSLGLDEGELFNMYREVPSI 155 + RHL + R+ ++ Q E +H+ ++ ++ TS +E E+F R P + Sbjct: 77 MPALRHLVDGHIRKATIQFQGMMEDIHAKSYSLMNKTFLTTS---EEREVFEWVRTQPQL 133 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K + +P D L V + E FY+GF L L Sbjct: 134 QNKI---AMIREIYDNP-------DVSNLGLWKKMVVSCMLETALFYSGFFYPLYLAGQG 183 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI-- 273 +MV E + I+ DE++H + + ++ Q K E +Q +E TL+++ Sbjct: 184 RMVSAGEIFNLIIMDEAVHGVY-VALLAQEKFAE----MNEAEQAYALAWYEETLMKLYR 238 Query: 274 -AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 A+ M VGL ++++++ N +G+E F+ E NP Sbjct: 239 NELAYTEMLYADVGL-VDEVKKFIRYNCNVLADNLGVERSFEDEEINPI 286 >gi|322385107|ref|ZP_08058754.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus cristatus ATCC 51100] gi|321270731|gb|EFX53644.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus cristatus ATCC 51100] Length = 321 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/277 (22%), Positives = 121/277 (43%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G ++L + + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSNKEKDLVGKVFGGLTLLDTLQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + + F E+VH+ ++ I ++L N E+ I Sbjct: 75 DALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTL--------NTKAEIEEIFEWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G+ + + V E FY+GF L NK+ Sbjct: 127 NPYLQRKAEIINEIYLNGSPLEKK-------IASVFLETFLFYSGFFTPLYYLGNNKLAN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAH 277 +AE + I+RDES+H G + + ++ L +E Q+K + +++ TL E + Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-PEEEQEKLKEWMYDLLYTLYENEEGY 235 Query: 278 -ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E++ G VG + ++++ AN+ +G +PLF Sbjct: 236 TESLYDG-VGW-TEEVKTFLRYNANKALMNLGQDPLF 270 >gi|258622932|ref|ZP_05717948.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM573] gi|258624605|ref|ZP_05719543.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM603] gi|262165762|ref|ZP_06033499.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus VM223] gi|262171415|ref|ZP_06039093.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus MB-451] gi|258583152|gb|EEW07963.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM603] gi|258584871|gb|EEW09604.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM573] gi|261892491|gb|EEY38477.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus MB-451] gi|262025478|gb|EEY44146.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus VM223] Length = 323 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/268 (23%), Positives = 108/268 (40%), Gaps = 30/268 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +DL+ W LT+ E+ + R +++ + A+ Sbjct: 32 NFWLPEKVPLSNDLSTW---GLLTEQEQTLTIRVFTGLTLLDTIQNSVGAPALMVDAVTQ 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ + ++L + E F E P + KA L Q Sbjct: 89 HEEAVLTNIAFMEAVHARSYSSVFSTLCTTKQIDEAFRWSEENPHLQRKAQLILHEYQAG 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 P K A V E FY+GF + K+ A+ + I+R Sbjct: 149 ECP---LKKKIAS-----------VFLESFLFYSGFYLPMHWSSRAKLTNTADLIRLIIR 194 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF----V 285 DE++H G + + ++ L + Q+++ + +LL Y E F V Sbjct: 195 DEAVH---GYYIGYKFQLAYRQL---DEAQQAQIKDYAFSLLFDLYEAEASYTEFLYDPV 248 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 GL + ++ + AN+ +G EPLF Sbjct: 249 GLTE-EVKHFLHYNANKALMNLGFEPLF 275 >gi|227833759|ref|YP_002835466.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|262184833|ref|ZP_06044254.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|227454775|gb|ACP33528.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] Length = 328 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 23/194 (11%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W++ S N W+P +VP+ +D+ WK + + + L + + V L Sbjct: 32 WDRLTS---NFWLPEKVPVSNDIPTWKIMDEAEQWATMQVFTGLTMLDTMQGTVG---AL 85 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKAN 160 +I + P AF E+VH+ ++ I +L FN R+ + KA+ Sbjct: 86 SILPDAATPHEEAVYTNIAFMESVHAKSYSNIFMTLADTPTINHAFNWGRQSERLQYKAH 145 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 L + + +SP + + E FY+GF L + +K+ Sbjct: 146 RVLDFYKRGNSPMRKAAS---------------TLLESFLFYSGFYLPLRMAAHSKLTNT 190 Query: 221 AEQYQYIMRDESLH 234 A+ + I+RDE++H Sbjct: 191 ADIIRLIIRDEAVH 204 >gi|296104353|ref|YP_003614499.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058812|gb|ADF63550.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 319 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/274 (20%), Positives = 113/274 (41%), Gaps = 39/274 (14%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++ V ++A Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSHAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P + +F EAVH+ ++ I ++L D ++ E S+ KAN L Y Q Sbjct: 84 TPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSEESESLQRKANLVLDYYQ 143 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 AD+ + + V E FY+GF + K+ A+ + I Sbjct: 144 -------------ADEPLKKK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLI 188 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G++ ++ ++ E E + + +L + E++Y E Sbjct: 189 IRDEAVHGYYIGYKYQKGLEKVSDVRRE-------ELKGFALDLLMDLYDNELSYTEEL- 240 Query: 281 PKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313 + G + ++ + AN+ +G E LF Sbjct: 241 ---YAGTGWEEEVKAFLCYNANKALMNLGYEALF 271 >gi|323341317|ref|ZP_08081561.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus ruminis ATCC 25644] gi|323091194|gb|EFZ33822.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus ruminis ATCC 25644] Length = 317 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 66/281 (23%), Positives = 120/281 (42%), Gaps = 34/281 (12%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL WK + ++E ++++ G ++L + + + Sbjct: 21 VWEK---LTEQFWLDTRIPLSNDLNDWKK---MKEEEHALVEKVFGGLTLLDTLQSVDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + L F E+VH+ ++ I ++L N E+ I + Sbjct: 75 SALKKDALTSHEAAVLNNIEFMESVHAKSYSSIFSTL--------NTPAEIEEIFEWTEK 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + D + VF E FY+GF L N++ Sbjct: 127 NEYLQY----KAEKICAIYRGDDALMKKAASVF---LESFLFYSGFYAPLYFLGHNRLNN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAY 275 +AE + I+RDES+H G + + +I L +E Q+K + +L++ E Y Sbjct: 180 VAEIIKLILRDESVH---GTYIGYKFQIRYRAL-AEEEQEKLKFEIVNLLYDLYQNEEKY 235 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 HE + +G ++++ AN+ +G EPLF+ T Sbjct: 236 THELYDE--LGW-TEDVGIFLRYNANKALMNLGFEPLFEET 273 >gi|49473850|ref|YP_031892.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella quintana str. Toulouse] gi|49239353|emb|CAF25686.1| Ribonucleotide reductase beta-chain [Bartonella quintana str. Toulouse] Length = 324 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/271 (22%), Positives = 109/271 (40%), Gaps = 37/271 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W S LT++ER + R +++ +++ Sbjct: 34 NFWLPEKVPLSNDIPSWAS---LTEEERKLTVRVFTGLTLLDTIQNTVGAISLMADAITE 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L ++ + F E + KA L+ + Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENIHLQKKARLVLERYEA- 149 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 S P K A + E FY+GF + K+ A+ + I+R Sbjct: 150 SDP---LKKKIAS-----------TLLESFLFYSGFYLPMYWASRAKLTNTADLIRLIIR 195 Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H G +N+ K +E + S +L + +E Y + Sbjct: 196 DEAVHGYYIGYKFQLGFAKLNESK-------KQEIKDFSFNLLFDLYNIECKYTEDLYDA 248 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +GL + ++ + AN+ +G EPLF Sbjct: 249 --LGL-TEDVKVFLHYNANKALMNLGFEPLF 276 >gi|37525251|ref|NP_928595.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784678|emb|CAE13578.1| ribonucleoside-diphosphate reductase 2 beta chain (ribonucleotide reductase 2) (R2f protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 319 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 59/264 (22%), Positives = 108/264 (40%), Gaps = 23/264 (8%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P ++P+ +D+ W N LT +E+ + R +++ A+ P Sbjct: 29 NFWLPEKIPLSNDITSW---NTLTTEEKKLTIRVFTGLTLLDTIQNTVGAPALMEDALTP 85 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 + +F EAVH+ ++ I ++L L D + + + S+ KA L Y Sbjct: 86 HEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDDAYRWSEKSFSLQNKAKIILNYY--- 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 S+ K + V E FY+GF + + A+ + I+R Sbjct: 143 ---SYHHPLKKK---------IASVFLESFLFYSGFYLPMYWSSRGILTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE++H + Q ++ L KE ++ + ++L E EI Y E VG Sbjct: 191 DEAIHGYYIGYKFQQSLKKHSTLEQKEIKEFTFSLLLELYENEIKYTEELY--DIVGW-T 247 Query: 290 PSCEQYMQFIANRRCHQIGLEPLF 313 ++++ + AN+ +G E LF Sbjct: 248 EDIKKFLHYNANKALMNLGYETLF 271 >gi|256820037|ref|YP_003141316.1| ribonucleotide reductase [Capnocytophaga ochracea DSM 7271] gi|315225453|ref|ZP_07867266.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea F0287] gi|256581620|gb|ACU92755.1| ribonucleotide reductase [Capnocytophaga ochracea DSM 7271] gi|314944551|gb|EFS96587.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea F0287] Length = 319 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 73/315 (23%), Positives = 123/315 (39%), Gaps = 23/315 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y E + + W+ +EV D+ +KS+ LT E+ +KR L A E Sbjct: 12 PFEYPEVMEFVNAMHKSFWVHSEVEFTADIQDFKSE--LTPVEKEAVKRALLGIAQVEVS 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +Y PE A E HS + ++ LG + F EVP Sbjct: 70 V-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLLEVPVF 126 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 ++N +Y ++A ++ + F ++ E ++ FA ILS R Sbjct: 127 KERSNVLKEY--------LAKNRENA----MERILFFTLIIENASLFSQFATILSFTRFK 174 Query: 216 KMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 + +A + DE LH N GI ++ +I ENP + K ++ + T + LE Sbjct: 175 GFLKNVANIIAWTSVDEQLHANAGIYILKKIFEENPEMKAKA-EEDATTFIRSYITLEDK 233 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLK 330 +G + + YM++ + Q+GL F + P W E + Sbjct: 234 MLDWIFEQGELEFFSKKDLSNYMRYRLDDSLTQLGLGKPFGISGEEAKPMMWFEEEVFSN 293 Query: 331 KEKNFFETRVTEYQQ 345 + +FF R T Y + Sbjct: 294 ELDDFFAKRPTAYTK 308 >gi|219681363|ref|YP_002456127.1| putative ribonucleoside diphosphate reductase beta chain [Erwinia phage phiEa21-4] gi|327198492|ref|YP_004327080.1| ribonucleoside diphosphate reductase beta chain [Erwinia phage phiEa104] gi|199580630|gb|ACH89017.1| putative ribonucleoside diphosphate reductase beta chain [Erwinia phage phiEa21-4] gi|311875188|emb|CBX44448.1| ribonucleoside diphosphate reductase beta chain [Erwinia phage phiEa104] Length = 365 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/256 (22%), Positives = 112/256 (43%), Gaps = 17/256 (6%) Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 ++S V+ NI+ + +SN E + +Q E +H+ T+ I+ D E+ + Sbjct: 86 ADSRVSRNIITLLAPFISNNEFAAMVTKQTEIENLHALTYSEIVRQCISDPTEMIKRVMD 145 Query: 152 VPSITAKANWALQYTQTLS--SPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFA 206 ++ +++ L G + D+ Q L F V EG+ F FA Sbjct: 146 NQAVLDRSSTIDDVMAELEILGAKKRLGYELDDEHIRQTLIKFMVSILALEGLEFIASFA 205 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ---KSRT 263 +L + +G+A+ Q IM DE LH ++ I +++P +W + +Q + Sbjct: 206 CTFALAQRGLFMGVAQLVQKIMLDEILHSKMDFAALD-ILLKDP-VWFQSYQNCKGDVQR 263 Query: 264 MLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TEN 318 +L E E +A +G VGLN ++++ + A + L+ + Y +N Sbjct: 264 ILDEVMENESNWADYIFSEGRSVVGLNPTLLKEWVYYSAKPLYDFLNLD--YNYPVVVKN 321 Query: 319 PFPWMSEVIDLKKEKN 334 P P+M + +++ ++N Sbjct: 322 PLPYMDKWMNIDSQQN 337 >gi|86148040|ref|ZP_01066342.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] gi|85834173|gb|EAQ52329.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] Length = 320 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/266 (22%), Positives = 105/266 (39%), Gaps = 26/266 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ WK LT++E+ + R +++ A+ P Sbjct: 29 NFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGLTLLDTIQNTVGAPALMEDARTP 85 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ + ++L E F E P + KA L Sbjct: 86 HEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFRWAEENPLLQKKAQIILDDYLAE 145 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 P V V E FY+GF + K+ A+ + I+R Sbjct: 146 GDPLKKK--------------VASVFLESFLFYSGFYLPMHWSSRAKLTNTADLIRLIIR 191 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA--TLLEIAYAHETMPKGFVGL 287 DE++H + I Q+ ++ ++E Q + + + +L EI + VGL Sbjct: 192 DEAIH-GYYIGYKFQLAYQS---LSEEEQARVKDEAYSLMFSLYEIETQYTESLYDPVGL 247 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313 + ++ + AN+ +G E LF Sbjct: 248 TE-DVKHFLHYNANKALMNLGFEALF 272 >gi|227358546|ref|ZP_03842871.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis ATCC 29906] gi|227161257|gb|EEI46331.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis ATCC 29906] Length = 337 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 25/265 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P ++P+ +D+ W N LT E+ + R +++ + P Sbjct: 47 NFWLPEKIPLSNDIPSW---NTLTQAEKQLTIRVFTGLTLLDTIQNTVGAPTLMPDAQTP 103 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 L F EAVH+ ++ I ++L L D + + E + K++ L+Y Q Sbjct: 104 HEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDDAYRWSEENTYLQKKSDIILRYYQ-- 161 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + L+ + V E FY+GF + K+ A+ + I+R Sbjct: 162 ------------DSDPLKKK-IASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIR 208 Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + G NQ+ + L ++ + + ++L + E+ Y + VG Sbjct: 209 DEAVHGYYIGYKFQNQL-LNKSSLEKQDIKDFAFSLLLDLYDNEVKYTEDLYDS--VGW- 264 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 ++++ + AN+ +G E LF Sbjct: 265 TEDVKKFLHYNANKALMNLGYEALF 289 >gi|121602770|ref|YP_988676.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella bacilliformis KC583] gi|120614947|gb|ABM45548.1| ribonucleoside-diphosphate reductase, beta subunit [Bartonella bacilliformis KC583] Length = 324 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/271 (21%), Positives = 111/271 (40%), Gaps = 37/271 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W+S LT++E+ + R +++ +++ Sbjct: 34 NFWLPEKVPLSNDIPSWES---LTEEEKKLTIRVFTGLTLLDTVQNTVGAVSLMADAVTE 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L L D + F E + KA L++ + Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTLCLTVDVDDAFRWSEENVYLQKKAKLVLEHYE-- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D ++ + F+ E FY+GF + K+ A+ + I+R Sbjct: 149 --------ANDPLKKKIASTFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 195 Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H G +N+ + +E + + ML + +E Y + Sbjct: 196 DEAIHGYYIGYKFQLGFAKLNEAQ-------KQEMKDFTFNMLFDLYNIECKYTEDLYDS 248 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +GL + ++ + AN+ +G E LF Sbjct: 249 --LGL-TEDVKVFLHYNANKALMNLGFESLF 276 >gi|209523562|ref|ZP_03272116.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima CS-328] gi|209495967|gb|EDZ96268.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima CS-328] Length = 112 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---K 314 Q + M A E + + + +G+ S EQY +++AN R IGLE L+ K Sbjct: 8 QDRIYEMFDAAVQHECRWTNHIVGNNILGITEHSTEQYTKYLANIRLRSIGLESLYSDPK 67 Query: 315 YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 Y ++P+ + D KKE NFFE VT Y + + WD Sbjct: 68 YQKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVSGWD 110 >gi|15827930|ref|NP_302193.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium leprae TN] gi|221230407|ref|YP_002503823.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium leprae Br4923] gi|14195114|sp|Q9CBQ2|RIR2_MYCLE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|13093483|emb|CAC30684.1| ribonucleotide reductase small subunit [Mycobacterium leprae] gi|219933514|emb|CAR71826.1| ribonucleotide reductase small subunit [Mycobacterium leprae Br4923] Length = 325 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/309 (20%), Positives = 124/309 (40%), Gaps = 40/309 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL W + LT E+ + R +++ +++ Sbjct: 33 TGNFWLPEKVPVSNDLPSWGT---LTASEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L + E F E ++ KA ++Y + Sbjct: 90 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTAEIDEAFRWSEENNNLQRKAKIVMEYYR 149 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D+ + V + E FY+GF + K+ A+ + I Sbjct: 150 -------------GDEPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLI 194 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G+ +++ + E ++ + +L E E+ Y + Sbjct: 195 IRDEAVHGYYIGYKFQRGLVLVDDAR-------RAELKEYTYELLFELYDNEVEYTQDLY 247 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFE 337 + VGL ++++++ AN+ +G E LF E NP + + + +FF Sbjct: 248 DR--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSALSPNADENHDFFS 304 Query: 338 TRVTEYQQG 346 + Y G Sbjct: 305 GSGSSYVIG 313 >gi|327197767|ref|YP_004301465.1| gp132 [Brochothrix phage A9] gi|299810367|gb|ADJ53166.1| gp132 [Brochothrix phage A9] Length = 203 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 20/194 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK S W T VP+ +DL W++ + + D + + G ++L + + + Sbjct: 29 TWEKLNSQF---WTATRVPVSNDLDDWRTLDPVAKD---LYGKVFGGLTLLDTLQSQDGM 82 Query: 102 LAIYRH-LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 L++ + +P R L F EA+H+ ++ I ++L + E+ N++ N Sbjct: 83 LSLLNNETQSPHMRAVLSNMLFMEAIHAQSYSTIFSTL-MTPQEIANVFD-----FTHTN 136 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 LQ L + + GT Q+ + +F+ E FY+GF L KM + Sbjct: 137 EHLQKKAHLINEVYQNGT--VPQKMIASVFL-----ESGLFYSGFYTPLYYLGNGKMANV 189 Query: 221 AEQYQYIMRDESLH 234 AE + I+RDES++ Sbjct: 190 AEVIRLILRDESVN 203 >gi|227510692|ref|ZP_03940741.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513708|ref|ZP_03943757.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus buchneri ATCC 11577] gi|227522501|ref|ZP_03952550.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus hilgardii ATCC 8290] gi|227083027|gb|EEI18339.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus buchneri ATCC 11577] gi|227090323|gb|EEI25635.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus hilgardii ATCC 8290] gi|227189813|gb|EEI69880.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 318 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 117/280 (41%), Gaps = 31/280 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL+ W++ L D + ++ G ++L + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 ++ + + P L F E+VH+ ++ I ++L E E+F+ + KA Sbjct: 75 ASLRKDVQTPHETAVLNNIQFMESVHAKSYSSIFSTLNTPEQIDEIFDWSDTEEFLQNKA 134 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 L D ++ + +F+ E FY+GF L NK+ Sbjct: 135 ---------LKIRDIYENNPDPLKKKIASVFL-----ETFLFYSGFYTPLWYLGHNKIPN 180 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +AE + I+RDES+H G + + +I L K Q+ + L++ LL YA+E Sbjct: 181 VAEIIKLILRDESVH---GTYIGYKFQIGFNQL-PKTKQEDLKNWLYD--LLYKLYANEE 234 Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYT 316 + + + FI AN+ +G +PLF T Sbjct: 235 KYTHLLYDQTGWTDDVLVFIRYNANKALMNLGQDPLFPDT 274 >gi|148656105|ref|YP_001276310.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus sp. RS-1] gi|148568215|gb|ABQ90360.1| ribonucleotide reductase [Roseiflexus sp. RS-1] Length = 297 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/263 (21%), Positives = 116/263 (44%), Gaps = 28/263 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P+++ D+ W++ LT DER ++ R F + E V +++ + + Sbjct: 32 WNPSDIDFSQDVRDWQT---LTADERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 88 Query: 114 RQYLLRQAF--EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 + L +F EEA H+ F +T + G+L + + +N+ + L Sbjct: 89 EEELFLTSFLWEEAKHTDFFNRFLTEVTGVTGDLSHYH--------TSNYRALIHEAL-- 138 Query: 172 PSFTTGTKDADQEFLQDL--FVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIM 228 P+ +D Q + + ++ EG+ TG+ A L R + M G + + Sbjct: 139 PAAMGRLRDDPSPEAQAIASLTYNMIVEGVLAETGYHAYFTMLERRDLMPGTRKGIGLLK 198 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA-HETMPKGFVGL 287 +DES H+ +G+ +++++ P LW ++ + +++ +++ A+A +E +P G Sbjct: 199 QDESRHIAYGVYLLSRLINAEPRLWDVIVERMNELVVYAMGVIDDAFACYEVVPFGL--- 255 Query: 288 NAPSCEQYMQFIAN---RRCHQI 307 S + +M F RR +I Sbjct: 256 ---SHDDFMHFAMGQFQRRLDRI 275 >gi|67008229|emb|CAH18519.1| ribonucleoside-dihosphate reductase beta chain [Rhodobacteraceae bacterium 198] Length = 325 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/271 (21%), Positives = 109/271 (40%), Gaps = 36/271 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W LT DE+ + R +++ + + P Sbjct: 34 NFWLPEKVPLSNDIQSWSQ---LTPDEQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITP 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ + ++L + E F E + AK+ L + Sbjct: 91 HEESVLSNIAFMEAVHARSYSSVFSTLCQTTEVDEAFRWSAENEHLQAKSRLILDEYNST 150 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 +SP V V E FY+GF + ++ A+ + I+R Sbjct: 151 ASPLRKK--------------VASVFLESFLFYSGFYLPMHWSSRARLTNTADLIRLIIR 196 Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H G++ +++ + KE + + +L + +E Y E + Sbjct: 197 DEAIHGYYIGYKFQRGLERVSEAE-------RKEIKDFAFALLFDLYDIEARYT-EQLYD 248 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 G +GL + ++ + AN+ +G E LF Sbjct: 249 G-LGLT-EDVKNFLHYNANKALQNLGFEALF 277 >gi|300780546|ref|ZP_07090401.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium genitalium ATCC 33030] gi|300533532|gb|EFK54592.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium genitalium ATCC 33030] Length = 333 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/305 (20%), Positives = 122/305 (40%), Gaps = 32/305 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYR 106 N W+P ++P+ +D+ W N L D E+L R NL + + V ++ + Sbjct: 41 TGNFWLPEKIPVSNDIPSW---NTLNDAEQLSTMRVFANLTLLDTIQGTVGAVSLIPDAK 97 Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166 L + AF E+VH+ ++ I +L P I W + Sbjct: 98 TLHEEAVYTNI---AFMESVHAKSYSNIYMTLA-----------STPQINDAFRWTEENA 143 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + D + + V+ E FY+GF L+ +K+ A+ + Sbjct: 144 EVQRKAKIIQSYYCGDDPLKRK--IASVMLESFLFYSGFYLPLNWSVHSKLTNTADIIRL 201 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETM-PKGF 284 I+RDE++H + I Q+ + + + E ++ + +L++ EI Y + P G+ Sbjct: 202 IIRDEAVH-GYYIGYKYQVGLRDESQQRQDELKEHAFDLLYDLYDNEIQYTEDLYDPLGW 260 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVT 341 ++++++ AN+ + +G E LF E +P S + + +FF + Sbjct: 261 T----EDVKRFLRYNANKALNNLGYEGLFPVDETRVSPAILASLAPNADENHDFFSGSGS 316 Query: 342 EYQQG 346 Y G Sbjct: 317 SYVIG 321 >gi|312162814|ref|YP_003933799.1| ribonucleotide reductase subunit 2 [Saimiriine herpesvirus 1] gi|308096447|gb|ADO13787.1| ribonucleotide reductase subunit 2 [Saimiriine herpesvirus 1] Length = 338 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 76/306 (24%), Positives = 118/306 (38%), Gaps = 43/306 (14%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLS 109 N W+ TE+ D + LT E + F ++++ LV N+ + A++ Sbjct: 54 NRWLETELVFAGD---EEDVAALTPGELGFYRFLFTFLSAADDLVTENLGNLAALF---P 107 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL------DEGELFNMYREVPSITAKANWAL 163 + Y + Q EAVH+ Y I L L E P+I K W Sbjct: 108 QKDILHYYVEQECIEAVHARV--YGIVQLVLFANNEASRREYVAHTINHPAIRDKVEWLE 165 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 SS + + ++ ++ EG++F FA I L N + + Sbjct: 166 ARVGECSS--------------VAEKYILMILIEGVFFAASFAAIAFLRTNNLLRVTCQS 211 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 I RDE++H + N P K + + EA +EI + H P+ Sbjct: 212 NDLISRDEAIHTTASCYIYNNYLTGYP----KPSTDRIHYLFREAVEIEIRFIHSQAPRD 267 Query: 284 FVGLNAPSCEQ---YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL---KKEKNFFE 337 L+A + Q Y+ F A+R I L PLF + P P S + L +K NFFE Sbjct: 268 SHILDAAALRQIDNYVHFCADRLLKMIKLPPLF---DAPAPDCSFPLALMFTEKHTNFFE 324 Query: 338 TRVTEY 343 +R T Y Sbjct: 325 SRSTAY 330 >gi|5230837|gb|AAD41037.1|AF112536_1 ribonucleotide reductase beta-chain [Corynebacterium glutamicum] Length = 334 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/273 (20%), Positives = 114/273 (41%), Gaps = 29/273 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + N + + + L + + V +++ Sbjct: 42 TGNFWLPEKVPVSNDIKSWGTLNEVEKAATMRVFTGLTLLDTIQGTVG---AISLLPDAD 98 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166 + L AF E+VH+ ++ I +L E+ + +R E ++ KA L Y Sbjct: 99 SLHEEAVLTNIAFMESVHAKSYSNIFMTLA-STAEINDAFRWSEENENLQRKAKIILSYY 157 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + D + + V+ E FY+GF + +K+ A+ + Sbjct: 158 E-------------GDDPLKRK--IASVILESFLFYSGFYLPMYWSSHSKLTNTADVIRL 202 Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GF 284 I+RDE++H + G + E P +E ++ + +L++ E Y+ + G+ Sbjct: 203 IIRDEAVHGYYIGYKYQKAVAKETPER-QEELKEYTFDLLYDLYDNETQYSEDLYDDLGW 261 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++++++IAN+ + +G E LF E Sbjct: 262 T----EDVKRFLRYIANKALNNLGYEGLFPADE 290 >gi|311113720|ref|YP_003984942.1| ribonucleotide-diphosphate reductase subunit beta [Rothia dentocariosa ATCC 17931] gi|310945214|gb|ADP41508.1| ribonucleotide-diphosphate reductase subunit beta [Rothia dentocariosa ATCC 17931] Length = 325 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/267 (21%), Positives = 113/267 (42%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ WK+ LT +E+ + R +++ +++ Sbjct: 33 TGNFWLPEKVPLSNDVPSWKT---LTAEEKELTMRVFTGLTLLDTIQGTVGAVSLLPDAV 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 AF E+VH+ ++ I ++L + + F E + KA L Y Sbjct: 90 TAHEEAVYTNIAFMESVHAKSYSSIFSTLSSTKEIDDAFRWASENEHLQKKAKIILAY-- 147 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 TG ++ V + E FY+GF + K+ A+ + I Sbjct: 148 -------YTGDDPLKKK------VASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLI 194 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + G + E+P E ++ + +L+E E++Y H ++ G VG Sbjct: 195 IRDEAVHGYYIGYKFQRGLAKESPER-QAELKEYTFNLLYELYENEVSYTH-SLYDG-VG 251 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 + ++++ + AN+ +G E +F Sbjct: 252 W-SEDVKKFLHYNANKALMNLGYEAMF 277 >gi|298345735|ref|YP_003718422.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 43063] gi|304390565|ref|ZP_07372518.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235796|gb|ADI66928.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 43063] gi|304326321|gb|EFL93566.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 322 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/269 (21%), Positives = 110/269 (40%), Gaps = 29/269 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ WK+ L +DE+ M R +++ +++ Sbjct: 30 TGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLLDTIQGTVGAVSLIPDSR 86 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ + ++L E E F E + KA+ L Y Sbjct: 87 TPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEIKESFRWSEENEYLQKKAHIVLDYYH 146 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 S + + E FY+GF + K+ A+ + I Sbjct: 147 GNDSEKRKVAS---------------TMLESFLFYSGFYAPMYWSAHAKLTNTADLIRLI 191 Query: 228 MRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM--PKGF 284 +RDE++H + I Q+ + E+ +E + + ++L + E Y ET+ P G Sbjct: 192 IRDEAVH-GYYIGYKYQLAMRESSESRRQEMKDYTFSLLMDLYDNEELYT-ETLYDPLGL 249 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++++++ AN+ +G E LF Sbjct: 250 T----EDVKKFLKYNANKALMNLGYEALF 274 >gi|50122260|ref|YP_051427.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium atrosepticum SCRI1043] gi|49612786|emb|CAG76236.1| ribonucleoside-diphosphate reductase 2 beta chain [Pectobacterium atrosepticum SCRI1043] Length = 320 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/272 (22%), Positives = 119/272 (43%), Gaps = 35/272 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHL 108 +N W+P +VP+ +D+ W + N T + +L I+ G + + N + + Sbjct: 28 TSNFWLPEKVPLSNDIPSWSTLN--TRERQLTIRVFTGL--TLLDTIQNTLGAPTLMPDA 83 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQY 165 P L +F EAVH+ ++ I ++L L E+ + YR E P++ K++ L + Sbjct: 84 VTPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYRWSEENPALQKKSDIILSH 142 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 ++ D ++ V V E FY+GF + K+ A+ + Sbjct: 143 YRS-------------DDPLMKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIR 187 Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM--PK 282 I+RDE++H + G + +P QQ+ + ++ LL+ Y +E + + Sbjct: 188 LIIRDEAVHGYYIGYKFQRALAKADPAR-----QQQVKNFAYD--LLQDLYDNEVLYTQE 240 Query: 283 GFVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313 + G+ ++++ + AN+ +G E LF Sbjct: 241 LYDGVGWTEDVKKFLHYNANKALMNLGYEALF 272 >gi|194468106|ref|ZP_03074092.1| Ribonucleoside-diphosphate reductase [Lactobacillus reuteri 100-23] gi|194452959|gb|EDX41857.1| Ribonucleoside-diphosphate reductase [Lactobacillus reuteri 100-23] Length = 339 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 71/313 (22%), Positives = 126/313 (40%), Gaps = 32/313 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +D+ W+ L DD + + G +++ + + Sbjct: 28 TWEK---LTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHVFGGLTLLDTVQSEAGL 81 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 A+ + P L F E+VH+ ++ I ++L + ++ ++ + N Sbjct: 82 TALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPD-QIKEIFEWSDTEEYLQNK 140 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 A++ PS K FL E FY+GF L NK+ +A Sbjct: 141 AVKIANMYLDPSQDPLKKKVANVFL----------ETFLFYSGFYTPLYYLGHNKLNNVA 190 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAH 277 E + I+RDES+H + I Q+ + + T++ QQ + L+E E Y H Sbjct: 191 EIIKLILRDESVHGTY-IGYKFQVGLRDR---TEKQQQDMKDWMYNFLYELYDNEEKYTH 246 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKN 334 + VG ++++ AN+ +G +PLF T NP M+ + + Sbjct: 247 LLYDQ--VGW-TDDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MNGISTSTSNHD 302 Query: 335 FFETRVTEYQQGA 347 FF Y+ GA Sbjct: 303 FFSQVGNGYRMGA 315 >gi|283786769|ref|YP_003366634.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter rodentium ICC168] gi|282950223|emb|CBG89859.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter rodentium ICC168] Length = 319 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/273 (21%), Positives = 110/273 (40%), Gaps = 37/273 (13%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101 +N W+P +VP+ +D+ W+S N +++L I+ G A + SL+A+ + Sbjct: 27 TSNFWLPEKVPLSNDIPAWQSLNAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADALT 84 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 P L +F EAVH+ ++ I ++L + + A W Sbjct: 85 ---------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTRDVDAAYAW 124 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + +D+ + + V E FY+GF + K+ A Sbjct: 125 SEENAPLQRKAQIILAHYASDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTA 182 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + + I+RDE++H + I Q +E P ++ + + +L E E+ Y E Sbjct: 183 DLIRLIIRDEAVH-GYYIGYKYQKGMEKLPDAAREDLKNFALDLLMELYDNEVRYTEELY 241 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 G +A + ++ + AN+ +G E LF Sbjct: 242 AD--TG-HAEDVQAFLCYNANKAMMNLGYEALF 271 >gi|291570484|dbj|BAI92756.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira platensis NIES-39] Length = 123 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---K 314 Q + M A E + + + +G+ S EQY +++AN R IGLE L+ K Sbjct: 19 QDRIYEMFDAAVQHECRWTNHIVGNNILGITEHSTEQYTKYLANIRLRSIGLESLYSDPK 78 Query: 315 YTENPFPWMSEVIDLKKE----KNFFETRVTEYQQGAELK-WD 352 Y ++P+ + D KKE NFFE VT Y + + WD Sbjct: 79 YQKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVSGWD 121 >gi|261342124|ref|ZP_05969982.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter cancerogenus ATCC 35316] gi|288315455|gb|EFC54393.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter cancerogenus ATCC 35316] Length = 319 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/207 (21%), Positives = 88/207 (42%), Gaps = 27/207 (13%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W++ + + + L + ++ V A+ Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSHAEQQLTIRVFTGLTLLDTIQNTVG---APALMSDALT 84 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQT 168 P + +F EAVH+ ++ I ++L D ++ E S+ KAN L+Y Q Sbjct: 85 PHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDTAYDWSEECESLQRKANLVLEYYQ- 143 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 AD + + V E FY+GF + K+ A+ + I+ Sbjct: 144 ------------ADDPLKKK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLII 189 Query: 229 RDESLHLNF-------GIDVINQIKIE 248 RDE++H + G++++++ + E Sbjct: 190 RDEAVHGYYIGYKYQKGLEIVSEARRE 216 >gi|227505793|ref|ZP_03935842.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] gi|227197639|gb|EEI77687.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] Length = 318 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/302 (20%), Positives = 112/302 (37%), Gaps = 26/302 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +DL W N +E+ R + ++L +++ Sbjct: 26 TGNFWLPEKIPVSNDLPKWGLMNA---EEQWATMRVFAGLTALDTLQGAVGAISLMPDAV 82 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L AF EAVH+ ++ I +L P I WA + Sbjct: 83 TPHEEAVLCNIAFMEAVHAKSYSNIFMTLS-----------STPEINRAFRWAEESETLR 131 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + + D ++ + E FY+GF L + A+ + I+R Sbjct: 132 YKSTRVREFYEGDNSLMRK--AASTLLESFLFYSGFYLPLRFASRGYLTNTADVIRLIIR 189 Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + G +K NP + + ++ + EI Y K + L Sbjct: 190 DEAVHGYYIGYKYQQAVKQLNPAQ-QQGLKDSVFDLVFDLYDNEITYTE----KIYDALG 244 Query: 289 -APSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344 ++++++ AN+ + +G E LF E +P S D + +FF + Y Sbjct: 245 WTEDVKRFLRYNANKALNNLGYEGLFPSDECRVDPAILSSLAPDANETHDFFSGSGSSYV 304 Query: 345 QG 346 G Sbjct: 305 IG 306 >gi|227545165|ref|ZP_03975214.1| ribonucleoside-diphosphate reductase [Lactobacillus reuteri CF48-3A] gi|300909160|ref|ZP_07126621.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri SD2112] gi|227184848|gb|EEI64919.1| ribonucleoside-diphosphate reductase [Lactobacillus reuteri CF48-3A] gi|300893025|gb|EFK86384.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri SD2112] Length = 339 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 71/313 (22%), Positives = 126/313 (40%), Gaps = 32/313 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +D+ W+ L DD + + G +++ + + Sbjct: 28 TWEK---LTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHVFGGLTLLDTVQSEAGL 81 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 A+ + P L F E+VH+ ++ I ++L + ++ ++ + N Sbjct: 82 TALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPD-QIKEIFEWSDTEEYLQNK 140 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 A++ PS K FL E FY+GF L NK+ +A Sbjct: 141 AVKIANMYLDPSQDPLKKKVANVFL----------ETFLFYSGFYTPLYYLGHNKLNNVA 190 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAH 277 E + I+RDES+H + I Q+ + + T++ QQ + L+E E Y H Sbjct: 191 EIIKLILRDESVHGTY-IGYKFQVGLRDR---TEKQQQDMKDWMYNFLYELYDNEEKYTH 246 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKN 334 + VG ++++ AN+ +G +PLF T NP M+ + + Sbjct: 247 LLYDQ--VGW-TDDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MNGISTSTSNHD 302 Query: 335 FFETRVTEYQQGA 347 FF Y+ GA Sbjct: 303 FFSQVGNGYRMGA 315 >gi|148543559|ref|YP_001270929.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri DSM 20016] gi|184152966|ref|YP_001841307.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri JCM 1112] gi|227363481|ref|ZP_03847603.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri MM2-3] gi|325681909|ref|ZP_08161427.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri MM4-1A] gi|148530593|gb|ABQ82592.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactobacillus reuteri DSM 20016] gi|183224310|dbj|BAG24827.1| ribonucleotide diphosphate reductase beta subunit [Lactobacillus reuteri JCM 1112] gi|227071495|gb|EEI09796.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri MM2-3] gi|324978553|gb|EGC15502.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri MM4-1A] Length = 339 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 71/313 (22%), Positives = 126/313 (40%), Gaps = 32/313 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +D+ W+ L DD + + G +++ + + Sbjct: 28 TWEK---LTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHVFGGLTLLDTVQSEAGL 81 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 A+ + P L F E+VH+ ++ I ++L + ++ ++ + N Sbjct: 82 TALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPD-QIKEIFEWSDTEEYLQNK 140 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 A++ PS K FL E FY+GF L NK+ +A Sbjct: 141 AVKIANMYLDPSQDPLKKKVANVFL----------ETFLFYSGFYTPLYYLGHNKLNNVA 190 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAH 277 E + I+RDES+H + I Q+ + + T++ QQ + L+E E Y H Sbjct: 191 EIIKLILRDESVHGTY-IGYKFQVGLRDR---TEKQQQDMKDWMYNFLYELYDNEEKYTH 246 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKN 334 + VG ++++ AN+ +G +PLF T NP M+ + + Sbjct: 247 LLYDQ--VGW-TDDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MNGISTSTSNHD 302 Query: 335 FFETRVTEYQQGA 347 FF Y+ GA Sbjct: 303 FFSQVGNGYRMGA 315 >gi|183981661|ref|YP_001849952.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2 [Mycobacterium marinum M] gi|183174987|gb|ACC40097.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2 [Mycobacterium marinum M] Length = 324 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/310 (20%), Positives = 124/310 (40%), Gaps = 42/310 (13%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ +++ Sbjct: 32 TGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDAL 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166 P L AF E+VH+ ++ I ++L E+ + +R E ++ KA L+Y Sbjct: 89 TPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRWSEENSNLQRKAEIVLEYY 147 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + D + V + E FY+GF + K+ A+ + Sbjct: 148 R-------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRL 192 Query: 227 IMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 I+RDE++H + G+ ++ + E + + +L E E+ Y + Sbjct: 193 IIRDEAVHGYYIGYKFQRGLAAADEAR-------RTELKDYTYELLFELYDNEVEYTQDL 245 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFF 336 + VGL ++++++ AN+ +G E LF E NP + + + +FF Sbjct: 246 YDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSALSPNADENHDFF 302 Query: 337 ETRVTEYQQG 346 + Y G Sbjct: 303 SGSGSSYVIG 312 >gi|118617484|ref|YP_905816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium ulcerans Agy99] gi|118569594|gb|ABL04345.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2 [Mycobacterium ulcerans Agy99] Length = 324 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/310 (20%), Positives = 124/310 (40%), Gaps = 42/310 (13%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ +++ Sbjct: 32 TGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDAL 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166 P L AF E+VH+ ++ I ++L E+ + +R E ++ KA L+Y Sbjct: 89 TPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRWSEENSNLQRKAEIVLEYY 147 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + D + V + E FY+GF + K+ A+ + Sbjct: 148 R-------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRL 192 Query: 227 IMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 I+RDE++H + G+ ++ + E + + +L E E+ Y + Sbjct: 193 IIRDEAVHGYYIGYKFQRGLAAADEAR-------RTELKDYTYELLFELYDNEVEYTQDL 245 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFF 336 + VGL ++++++ AN+ +G E LF E NP + + + +FF Sbjct: 246 YDE--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSALSPNADENHDFF 302 Query: 337 ETRVTEYQQG 346 + Y G Sbjct: 303 SGSGSSYVIG 312 >gi|116493227|ref|YP_804962.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus pentosaceus ATCC 25745] gi|116103377|gb|ABJ68520.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Pediococcus pentosaceus ATCC 25745] Length = 317 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 64/279 (22%), Positives = 117/279 (41%), Gaps = 27/279 (9%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL+ W+ L +D + ++ G ++L + + + Sbjct: 20 TWEK---LTEQFWLDTRIPISNDLSDWRE---LDEDHKWVVGHVFGGLTLLDTLQSQDGM 73 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 A+ + + P L F E+VH+ ++ I +L N E+ I A ++ Sbjct: 74 AALRKDIRTPHETAVLNNIQFMESVHAKSYSSIFETL--------NTPSEIDEIFAWSD- 124 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + ++ Q + + D E + V E FY+GF L N++ +A Sbjct: 125 SEEFLQNKTKRIYELY---HDDEHPLKKKISSVFLETFLFYSGFFTPLYYLGHNQLNNVA 181 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM---LHEATLLEIAYAHE 278 E + I+RDES+H G + + ++ L E Q+ M L++ E Y H Sbjct: 182 EIIKLILRDESVH---GTYIGYKFQLGLKELGENEQQEIKDWMYNFLYDLYDNEEKYVHT 238 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + VG + ++ AN+ +G +PLF TE Sbjct: 239 LYDQ--VGW-TDEVLTFTRYNANKALMNLGQDPLFPDTE 274 >gi|300859086|ref|YP_003784069.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium pseudotuberculosis FRC41] gi|300686540|gb|ADK29462.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium pseudotuberculosis FRC41] gi|302206792|gb|ADL11134.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium pseudotuberculosis C231] gi|302331346|gb|ADL21540.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium pseudotuberculosis 1002] gi|308277038|gb|ADO26937.1| Ribonucleotide reductase, beta subunit [Corynebacterium pseudotuberculosis I19] Length = 328 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/271 (20%), Positives = 110/271 (40%), Gaps = 25/271 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL W + N L + + L + + V +++ Sbjct: 36 TGNFWLPEKVPVSNDLKSWGTLNDLEKTTTMRVFTGLTMLDTIQGTVG---AVSMIPDAI 92 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I +L + E F E ++ KA L Y + Sbjct: 93 TPHEEAVYTNIAFMESVHAKSYSNIFMTLASTKEINEAFRWSEENENLQKKAKIVLSYYE 152 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 G ++ V + E FY+GF + K+ A+ + I Sbjct: 153 ---------GADPLKRK------VASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLI 197 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + G ++ + P +E ++ + +L++ EI Y + +G Sbjct: 198 IRDEAVHGYYIGYKYQQAVREQTPER-QEELKEYTFDLLYDLYDNEIQYTEDLYDD--LG 254 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++++++ AN+ + +G E LF E Sbjct: 255 W-TEDVKRFLRYNANKALNNLGYEGLFPADE 284 >gi|139472853|ref|YP_001129417.1| ORF60 [Human herpesvirus 8] gi|1718316|gb|AAC57145.1| ORF 60 [Human herpesvirus 8 type M] gi|2246534|gb|AAB62659.1| ORF 60 [Human herpesvirus 8] gi|87196889|gb|ABD28915.1| ORF60 [Human herpesvirus 8] gi|261853541|gb|ACY00463.1| ORF60 [Human herpesvirus 8] gi|312275208|gb|ADQ57945.1| core gene UL40 family protein [Human herpesvirus 8] Length = 305 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 30/297 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W P+++P+ D++ + L+D ++ + F +E LV NI + + ++ Sbjct: 26 NRWFPSQIPLHLDVS---HVHQLSDADKDFYRFLFTFLGMAERLVNFNIE-DLVTNFNSH 81 Query: 112 ECRQYLLRQAFEEAVHSHTFQYII-TSLGLDEGELFNMYREV---PSITAKANWALQYTQ 167 + Y Q E +H + I+ GEL ++ P++ K W Sbjct: 82 DVAHYYAEQVAMENIHGVVYANILKIFFNNSRGELLAYAAKIILDPALCEKLEW------ 135 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVGIAEQYQY 226 L S TK Q + +F +V EG++F + F I SL R M G+ Y Sbjct: 136 -LHSRVRKATTK------AQKILMFLIV-EGIYFISSFYSI-SLCRVRGIMPGVCLANDY 186 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 I RDE LH + N + + K + + + EA +EI + + G Sbjct: 187 ISRDELLHTKAASMLYNTMV----EIQEKPSHAEVQALFREAVNIEIRFI-QAKAAGVTL 241 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 +N ++++ A+R I + P+F T P K NFFE ++Y Sbjct: 242 VNVVDIRRFLEATADRILRDIFVPPIFG-TPPPEACPLSYTGSFKAVNFFERDNSDY 297 >gi|253689503|ref|YP_003018693.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756081|gb|ACT14157.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 320 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/271 (20%), Positives = 116/271 (42%), Gaps = 33/271 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W + N + + L + ++ + ++ Sbjct: 28 TSNFWLPEKVPLSNDIPSWSTLNARERQLTIRVFTGLTLLDTIQNTLGAPTLMP---DAV 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166 P L +F EAVH+ ++ I ++L L E+ + YR E P++ K++ L + Sbjct: 85 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYRWSEENPALQKKSDIILSHY 143 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 ++ D ++ V V E FY+GF + K+ A+ + Sbjct: 144 RS-------------DDPLMKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRL 188 Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM--PKG 283 I+RDE++H + G + +P QQ+ + ++ LL+ Y +E + + Sbjct: 189 IIRDEAVHGYYIGYKFQRGLAKADPAR-----QQQVKNFAYD--LLQDLYDNEVLYTQEL 241 Query: 284 FVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313 + G+ ++++ + AN+ +G E LF Sbjct: 242 YDGVGWTEDVKKFLHYNANKALMNLGYEALF 272 >gi|68535550|ref|YP_250255.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium jeikeium K411] gi|68263149|emb|CAI36637.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium jeikeium K411] Length = 331 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/267 (19%), Positives = 106/267 (39%), Gaps = 21/267 (7%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + N + + + L + + V + + + P Sbjct: 41 NFWLPEKVPLSNDVPSWSTLNDMEKQATMRVFTGLTMLDTIQGTVG---AVKLIEDAATP 97 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 +F E+VH+ ++ I +L P I W+ + + + Sbjct: 98 HEEAVFTNISFMESVHAKSYSSIFMTLA-----------STPEINDAFRWSEENEKLQNK 146 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + D + + V+ E FY+GF + K+ A+ + I+RDE Sbjct: 147 AKIILDFYEGDDPMKKK--IASVLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDE 204 Query: 232 SLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 S+H + G ++ E P +E ++ + +L E E Y + + +G Sbjct: 205 SVHGYYIGYKYQRALENETPER-QEELKEHTFDLLLELYDNEAQYTEDLYDE--LGWTE- 260 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++++++ AN+ + +G E LF E Sbjct: 261 DVKRFLRYNANKALNNLGYEGLFPADE 287 >gi|260579705|ref|ZP_05847564.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium jeikeium ATCC 43734] gi|258602135|gb|EEW15453.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium jeikeium ATCC 43734] Length = 331 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/267 (19%), Positives = 106/267 (39%), Gaps = 21/267 (7%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + N + + + L + + V + + + P Sbjct: 41 NFWLPEKVPLSNDVPSWSTLNDMEKQATMRVFTGLTMLDTIQGTVG---AVKLIEDAATP 97 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 +F E+VH+ ++ I +L P I W+ + + + Sbjct: 98 HEEAVFTNISFMESVHAKSYSSIFMTLA-----------STPEINDAFRWSEENEKLQNK 146 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + D + + V+ E FY+GF + K+ A+ + I+RDE Sbjct: 147 AKIILDFYEGDDPMKKK--IASVLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDE 204 Query: 232 SLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 S+H + G ++ E P +E ++ + +L E E Y + + +G Sbjct: 205 SVHGYYIGYKYQRALENETPER-QEELKEHTFDLLLELYDNEAQYTEDLYDE--LGWTE- 260 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++++++ AN+ + +G E LF E Sbjct: 261 DVKRFLRYNANKALNNLGYEGLFPADE 287 >gi|163791218|ref|ZP_02185634.1| ribonucleotide-diphosphate [Carnobacterium sp. AT7] gi|159873488|gb|EDP67576.1| ribonucleotide-diphosphate [Carnobacterium sp. AT7] Length = 320 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 28/280 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK + W T +P+ +DL W L E+ M+ + G ++L + + V Sbjct: 21 TWEKLVEQF---WTDTRIPVSNDLDDWAR---LPKAEKDMVGKVFGGLTLLDTLQSQDGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 A+ + F E++H+ ++ I ++L N E+ I Sbjct: 75 QALKPFIRTQHEEAVYNNIQFMESMHAKSYSAIFSTL--------NSKVEIDEIFQWTNT 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + GT+ + V V+ E FY+GF L NK+ Sbjct: 127 NDLLQIKASTINDIYQNGTELQRK-------VASVMLESFLFYSGFFAPLHYLGNNKLPN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I QI P +E + + +L + E+ YA Sbjct: 180 VAEIIKLILRDESVHGTY-IGYKFQIAYNQLPDNEKEEMKNWTYELLFKLYQNEVKYAEY 238 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + +G + ++++ AN+ +G +PLF T N Sbjct: 239 LYDE--IGW-TERVKVFLRYNANKALQNLGFDPLFPDTAN 275 >gi|116333244|ref|YP_794771.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus brevis ATCC 367] gi|116098591|gb|ABJ63740.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactobacillus brevis ATCC 367] Length = 331 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 71/298 (23%), Positives = 119/298 (39%), Gaps = 67/298 (22%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L D + ++ G ++L + + + Sbjct: 23 TWEK---LTEQFWLDTRIPVSNDLDDWRT---LDTDHQWVVGHVFGGLTLLDTLQSQDGM 76 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 A+ R + P L F E+VH+ ++ I ++L N E+ I Sbjct: 77 AALRRDIRTPHETAVLNNIQFMESVHAKSYSTIFSTL--------NTPDEIDEI------ 122 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQ-------DLF----------VFYVVFEGMWFYTG 204 Q++ + +EFLQ DL+ + V E FY+G Sbjct: 123 -FQWSDS--------------EEFLQNKTKRIYDLYHDDEHPLKKKISSVFLETFLFYSG 167 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 F L NK+ +AE + I+RDES+H G + + ++ L E QQ M Sbjct: 168 FFTPLYYLGHNKLNNVAEIIKLILRDESVH---GTYIGYKFQLGMKELTDAEQQQMKDWM 224 Query: 265 ---LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYT 316 L++ E Y H + +G E+ + FI AN+ +G +PLF T Sbjct: 225 YDFLYQLYDNEEKYTHTLYDQ--IGW----TEKVLTFIRYNANKALMNLGQDPLFPDT 276 >gi|51247866|pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis gi|51247867|pdb|1UZR|B Chain B, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis gi|51247868|pdb|1UZR|C Chain C, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis Length = 296 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/296 (20%), Positives = 120/296 (40%), Gaps = 42/296 (14%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 17 NRLQDEKDAEVWDRL---TGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTM 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR- 150 +++ +++ P L AF E+VH+ ++ I ++L E+ + +R Sbjct: 71 LDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRW 129 Query: 151 --EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 E ++ KA LQ + D+ + V + E FY+GF Sbjct: 130 SEENRNLQRKAEIVLQSYR-------------GDEPLKRK--VASTLLESFLFYSGFYLP 174 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKS 261 + K+ A+ + I+RDE++H G+ +++ + E + + Sbjct: 175 MYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVT-------RAELKDYT 227 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +L E E+ Y + + VGL ++++++ AN+ +G E LF E Sbjct: 228 YELLFELYDNEVEYTQDLYDE--VGLTE-DVKKFLRYNANKALMNLGYEALFPRDE 280 >gi|326381484|ref|ZP_08203178.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL B-59395] gi|326199731|gb|EGD56911.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL B-59395] Length = 333 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/303 (20%), Positives = 121/303 (39%), Gaps = 28/303 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LTD E+ + R +++ +++ Sbjct: 41 TGNFWLPEKVPVSNDIPSWGT---LTDYEKTLTMRVFTGLTLLDTIQGTVGAISLIPDAL 97 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L + E F E + KA + Y + Sbjct: 98 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSEENEYLQRKAQIVMDYYR 157 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 158 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLI 202 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + G ++++ P +E + + +L E E Y + VG Sbjct: 203 IRDEAVHGYYIGYKYQRGLEVQTPER-RQELKDYTFELLFELYDNETDYTEALYDE--VG 259 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343 L + ++++++ AN+ +G E +F E NP + + + +FF + Y Sbjct: 260 L-SEDVKKFLRYNANKALMNLGYEAMFPKDETDVNPAILSALSPNADENHDFFSGSGSSY 318 Query: 344 QQG 346 G Sbjct: 319 VIG 321 >gi|257865182|ref|ZP_05644835.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC30] gi|257871507|ref|ZP_05651160.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC10] gi|257874804|ref|ZP_05654457.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC20] gi|325571550|ref|ZP_08147050.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus casseliflavus ATCC 12755] gi|257799116|gb|EEV28168.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC30] gi|257805671|gb|EEV34493.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC10] gi|257808970|gb|EEV37790.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC20] gi|325156026|gb|EGC68222.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus casseliflavus ATCC 12755] Length = 321 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/280 (22%), Positives = 115/280 (41%), Gaps = 28/280 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ + L E+ + G +++ + + + Sbjct: 22 TWEK---LTEQFWLDTRIPLSNDLDDWRTLSPL---EKTTVGYVFGGLTLLDTVQSESGM 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + + P L F E+VH+ ++ I ++L N E+ I Sbjct: 76 DQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKAEIADIFEWTNT 127 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + GT + + V E FY+GF L NK+ Sbjct: 128 NPYLQKKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPLYYLGNNKLAN 180 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 +AE + I+RDES+H + I Q+ E P ++ + +L+E E Y E Sbjct: 181 VAEIIKLIIRDESVHGTY-IGYKFQLGFNELPEDEQQKLKDWMYDLLYELYENEERYTEE 239 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + +G + ++++ AN+ +G +PLF T N Sbjct: 240 LYDE--IGW-TEEVKTFLRYNANKALMNLGQDPLFPDTAN 276 >gi|197284313|ref|YP_002150185.1| ribonucleotide-diphosphate reductase subunit beta [Proteus mirabilis HI4320] gi|194681800|emb|CAR41036.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis HI4320] Length = 322 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/265 (21%), Positives = 109/265 (41%), Gaps = 25/265 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P ++P+ +D+ W N LT E+ + R +++ + P Sbjct: 32 NFWLPEKIPLSNDIPSW---NTLTQAEKQLTIRVFTGLTLLDTIQNTVGAPTLMPDAQTP 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 L F EAVH+ ++ I ++L L D + + E + K++ L+Y Q Sbjct: 89 HEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDDAYRWSEENTYLQKKSDIILRYYQ-- 146 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + L+ + V E FY+GF + K+ A+ + I+R Sbjct: 147 ------------DSDPLKKK-IASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIR 193 Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + G NQ+ + L + + + ++L + E+ Y + VG Sbjct: 194 DEAVHGYYIGYKFQNQL-LNKSSLEKQNIKDFAFSLLLDLYDNEVKYTEDLYDS--VGW- 249 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 ++++ + AN+ +G E LF Sbjct: 250 TEDVKKFLHYNANKALMNLGYEALF 274 >gi|257125877|ref|YP_003163991.1| ribonucleoside-diphosphate reductase [Leptotrichia buccalis C-1013-b] gi|257049816|gb|ACV39000.1| Ribonucleoside-diphosphate reductase [Leptotrichia buccalis C-1013-b] Length = 335 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/249 (21%), Positives = 110/249 (44%), Gaps = 14/249 (5%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 I H+ + + R L E +H+ ++ I T++ E F +E P + KAN Sbjct: 78 IIDHIESLQNRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFRWVQENPHLQYKANK 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 Y Q +++P +A + + V E FY+GF L L +MV Sbjct: 138 IDTYYQKMNNP-------EASKRDIAMALAASVYLETYLFYSGFFLPLWLAGQGEMVASC 190 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + + I+ DES+H F + ++ + + + + ++++ E Y E Sbjct: 191 DIIKKIIADESIHGVFVGLLFQELYNSFSEEEKADMRAELKKLMYDLYENETRYTDEIY- 249 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRV 340 G +GL + ++Y+++ AN+ +G E F+ +N P + ++++ + +FF + Sbjct: 250 -GDLGLTG-NVKEYIRYNANKALMNLGFEEEFE-VKNVNPIVLNGLNVETTQHDFFSKKS 306 Query: 341 TEYQQGAEL 349 T Y++ E+ Sbjct: 307 TNYEKALEV 315 >gi|225351964|ref|ZP_03742987.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157211|gb|EEG70550.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 330 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 69/360 (19%), Positives = 143/360 (39%), Gaps = 50/360 (13%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI +R+ + D+ + + N+L K W++ N W+P +VP+ +DL Sbjct: 1 MAPISVPRQRIKLIDRV---SAINWNKLEDDKDLEVWDR---LTGNFWLPEKVPVSNDLP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +W++ +++ E + R +++ +++ P AF E+V Sbjct: 55 VWRT---MSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 H+ ++ I ++L +DE F+ E + KA L Y + S + Sbjct: 112 HAKSYSSIFSTLCSTRQIDEA--FSWSEENEYLQRKARIVLDYYEGDSPLKRKVAS---- 165 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF----- 237 + E FY+GF + K+ A+ + I+RDE++H + Sbjct: 166 -----------TLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKY 214 Query: 238 --GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295 G++++++ K E + + +L+E E+ Y VGL E++ Sbjct: 215 QKGLELVSEDK-------RGELRDYTYDLLNELYDNEVEYTRSLYEP--VGLTQ-DVEKF 264 Query: 296 MQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +++ N+ +G LF NP + + + +FF + Y G ++ D Sbjct: 265 LRYNGNKALMNLGYPALFPQEICDVNPSILAALSPNADENHDFFSGSGSSYVMGKSVETD 324 >gi|33340378|gb|AAQ14729.1|AF320576_197 putative ribonucleoside diphosphate reductase beta chain [Enterobacteria phage Felix 01] Length = 377 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 9/156 (5%) Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+ LF EG+ F FA +L +K GIA+ Q IM DE LH I+V+ + Sbjct: 198 ILKGLFAV-TALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKE 256 Query: 245 IKIENPHLWTKEFQQ---KSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFI 299 ++ W K FQQ + + +L E E +++ +G VGLN +++ + Sbjct: 257 TLRDDE--WQKAFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYN 314 Query: 300 ANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEKN 334 A G+ F E P +M + +++ KE+N Sbjct: 315 AAPLYDMFGIPRDFVAPKEPPLKYMIKKMEIDKEQN 350 >gi|315654326|ref|ZP_07907234.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 51333] gi|315657771|ref|ZP_07910651.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491361|gb|EFU80978.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 51333] gi|315491568|gb|EFU81179.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 322 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/269 (21%), Positives = 112/269 (41%), Gaps = 29/269 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ WK+ L +DE+ M R +++ +++ Sbjct: 30 TGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLLDTIQGTVGAVSLIPDSR 86 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ + ++L E E F E + KA+ L Y Sbjct: 87 TPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEINESFRWSEENEYLQKKAHIVLDYYH 146 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 G ++ V + E FY+GF + K+ A+ + I Sbjct: 147 ---------GNDPEKRK------VASTMLESFLFYSGFYAPMYWSAHAKLTNTADLIRLI 191 Query: 228 MRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM--PKGF 284 +RDE++H + I Q+ + E+ +E + + ++L + E Y ET+ P G Sbjct: 192 IRDEAVH-GYYIGYKYQLAMRESSESRRQEMKDYTFSLLMDLYDNEELYT-ETLYDPLGL 249 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++++++ AN+ +G E LF Sbjct: 250 T----EDVKKFLKYNANKALMNLGYEALF 274 >gi|308173699|ref|YP_003920404.1| ribonucleoside-diphosphate reductase minor subunit [Bacillus amyloliquefaciens DSM 7] gi|307606563|emb|CBI42934.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus amyloliquefaciens DSM 7] gi|328553367|gb|AEB23859.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus amyloliquefaciens TA208] gi|328911843|gb|AEB63439.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus amyloliquefaciens LL3] Length = 329 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 64/298 (21%), Positives = 121/298 (40%), Gaps = 20/298 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + DL WK D + + L + + IV H+ + Sbjct: 30 WLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVA---EHVEGHQR 86 Query: 114 RQYLLRQAF-EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170 + L A E AVH+ ++ I +L E E+F ++ + KA+ + Sbjct: 87 KAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAHTVV------- 139 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 K D+ L V V E FY+GF L K++ E I+RD Sbjct: 140 --GLYRAIKKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E++H + + +I + E ++ + +L E E+ Y + + VGL + Sbjct: 198 EAIHGVYVGLLAQEIYNKQTEAKKAELREFAIELLEELYHNELEYTEDLYDQ--VGL-SH 254 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGA 347 ++++++ AN+ +G +P F+ E+ P + ++ K K +FF + Y++ Sbjct: 255 DVKKFIRYNANKALMNLGFDPYFE-EEDINPIVLNGLNTKTKSHDFFSMKGNGYKKAT 311 >gi|332018842|gb|EGI59398.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex echinatior] Length = 176 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 3/112 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPM-QDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + P++Y W+ Y A + W EV + + D W K L DE+ I L FFA+S Sbjct: 66 IFPIQYPDIWDMYKKAVASFWTIEEVSLHKQDKKDWNEK--LNSDEKRFISHVLAFFAAS 123 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 + +V N++ + + PE R + Q E +HS + +I + D E Sbjct: 124 DGIVNENLIEKFSQEVKIPEARCFYGFQIAIENIHSEMYSLLIETYISDPKE 175 >gi|269975299|gb|ACZ55523.1| ribonucleoside diphosphate reductase beta chain [Staphylococcus phage SA1] Length = 357 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 9/156 (5%) Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+ LF EG+ F FA +L +K GIA+ Q IM DE LH I+V+ + Sbjct: 178 ILKGLFAV-TALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKE 236 Query: 245 IKIENPHLWTKEFQQ---KSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFI 299 ++ W K FQQ + + +L E E +++ +G VGLN +++ + Sbjct: 237 TLRDDE--WQKAFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYN 294 Query: 300 ANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEKN 334 A G+ F E P +M + +++ KE+N Sbjct: 295 AAPLYDMFGIPRDFVAPKEPPLKYMIKKMEIDKEQN 330 >gi|38707874|ref|NP_944994.1| Ribonucleoside triphosphate reductase, beta chain [Enterobacteria phage Felix 01] gi|238801854|ref|YP_002922904.1| ribonucleoside triphosphate reductase, beta chain [Enterobacteria phage WV8] gi|33340477|gb|AAQ14828.1| putative ribonucleoside diphosphate reductase beta chain [Enterobacteria phage Felix 01] gi|216263067|gb|ACJ71935.1| ribonucleoside triphosphate reductase, beta chain [Enterobacteria phage WV8] Length = 357 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 9/156 (5%) Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+ LF EG+ F FA +L +K GIA+ Q IM DE LH I+V+ + Sbjct: 178 ILKGLFAV-TALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKE 236 Query: 245 IKIENPHLWTKEFQQ---KSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFI 299 ++ W K FQQ + + +L E E +++ +G VGLN +++ + Sbjct: 237 TLRDDE--WQKAFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYN 294 Query: 300 ANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEKN 334 A G+ F E P +M + +++ KE+N Sbjct: 295 AAPLYDMFGIPRDFVAPKEPPLKYMIKKMEIDKEQN 330 >gi|312864696|ref|ZP_07724927.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] gi|311099823|gb|EFQ58036.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] Length = 319 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 119/277 (42%), Gaps = 32/277 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---LSEAEKDLVGKVFGGLTLLDTMQSQTGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 AI + L F E+VH+ ++ I ++L N E+ I Sbjct: 75 EAIRGDIRTQHEEAVLNNIQFMESVHAKSYSSIFSTL--------NTKSEIEEIFDWTNN 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQ + + + G A Q+ + F+ E FY+GF L NK+ Sbjct: 127 NEYLQKKAEIINEIYLHGG--ALQKKVASTFL-----ETFLFYSGFFTPLYYLGNNKLSN 179 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +AE + I+RDES+H G + + ++ L ++E Q + R +++ LL Y +E Sbjct: 180 VAEIIKLIIRDESVH---GTYIGYKFQLGFNEL-SEEEQSEFRDWMYD--LLYQLYENEE 233 Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLF 313 + + E+ M F+ AN+ +G +PLF Sbjct: 234 LYTKTLYDEVGWTEEVMTFLRYNANKALMNLGQDPLF 270 >gi|332671991|ref|YP_004454999.1| ribonucleoside-diphosphate reductase [Cellulomonas fimi ATCC 484] gi|332341029|gb|AEE47612.1| Ribonucleoside-diphosphate reductase [Cellulomonas fimi ATCC 484] Length = 326 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 65/321 (20%), Positives = 130/321 (40%), Gaps = 31/321 (9%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L K W++ + N W+P +VP+ +D+ W + LT++E+ + R Sbjct: 19 NRLEDEKDAEVWDRLVG---NFWLPEKVPVSNDIQSWAT---LTEEEKTLTMRVFTGLTL 72 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMY 149 +++ +++ P AF E+VH+ ++ I ++L + E F Sbjct: 73 LDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEAFRWS 132 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E ++ KA ++Y + S + + E FY+GF + Sbjct: 133 EENVNLQRKAEIVMKYYKGDSPLKRKVAS---------------TLLESFLFYSGFYLPM 177 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 K+ A+ + I+RDE++H + G ++ +P +E + + +L E Sbjct: 178 YWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKLSPEE-RQELKDYTFELLFEL 236 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325 E+ Y + VGL ++++++ AN+ +G E LF E NP + Sbjct: 237 YDNEVEYTQDLYDG--VGL-TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSAL 293 Query: 326 VIDLKKEKNFFETRVTEYQQG 346 + + +FF + Y G Sbjct: 294 SPNADENHDFFSGSGSSYVIG 314 >gi|260889741|ref|ZP_05901004.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia hofstadii F0254] gi|260860347|gb|EEX74847.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia hofstadii F0254] Length = 335 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/249 (21%), Positives = 109/249 (43%), Gaps = 14/249 (5%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 I H+ + + R L E +H+ ++ I T++ E F +E P + KAN Sbjct: 79 IIDHIESLQNRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFRWVQENPHLQYKANK 138 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 Y Q +++P +A + + V E FY+GF L L +MV Sbjct: 139 IDAYYQKMNNP-------EASKREIAMALAASVYLETYLFYSGFFLPLWLAGQGEMVASC 191 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + + I+ DES+H F + ++ + + + + ++++ E Y E Sbjct: 192 DIIKKIIADESIHGVFVGLLFQELYNSFSEEEKADMRAELKKLMYDLYENETRYTDEIY- 250 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRV 340 G +GL ++Y+++ AN+ +G E F+ +N P + ++++ + +FF + Sbjct: 251 -GDLGLTG-DVKEYIRYNANKALMNLGFEEEFE-VKNVNPIVLNGLNVETTQHDFFSKKS 307 Query: 341 TEYQQGAEL 349 T Y++ E+ Sbjct: 308 TNYEKALEV 316 >gi|330013348|ref|ZP_08307619.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] gi|328533536|gb|EGF60259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] Length = 320 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 67/321 (20%), Positives = 126/321 (39%), Gaps = 49/321 (15%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W++ + + + L + ++ V ++A Sbjct: 29 SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DALT 85 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQT 168 P L +F EAVH+ ++ I ++L + F + KA L Y Q Sbjct: 86 PHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFAWSESCDPLQCKAQLMLGYYQ- 144 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 AD+ + + V E FY+GF + K+ A+ + I+ Sbjct: 145 ------------ADEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLII 190 Query: 229 RDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 RDE++H + G+++++ K E E + + +L + E+AY+ E Sbjct: 191 RDEAVHGYYIGYKYQKGLEIVSPGKRE-------ELKNFALDLLMDLYDNELAYSRELYG 243 Query: 282 KG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFF 336 + F ++A C + AN+ +G E LF NP + + + +FF Sbjct: 244 ESGWFDDVSAFLC-----YNANKALMNLGYEALFPAEMAAVNPAILAALSPNADENHDFF 298 Query: 337 ETRVTEYQQG-----AELKWD 352 + Y G A+ WD Sbjct: 299 SGSGSSYVIGKMEETADDDWD 319 >gi|298256097|gb|ADI71327.1| ribonucleoside diphosphate reductase beta subunit-like protein [European catfish virus] gi|298256101|gb|ADI71329.1| ribonucleoside diphosphate reductase beta subunit-like protein [European sheatfish virus] Length = 202 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 15/186 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HWM TE+ ++DD+ WKS +T E+ + L F + Sbjct: 32 PFRYAWAEDIRTKHEKVHWMETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 91 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 T K ++ ++ + P A V+ EG+ + F +L+ R Sbjct: 150 TDKLDF-MREMDCSTLPGLARSLFRA------------VLNEGVSLFAAFVMLLTFQRRG 196 Query: 216 KMVGIA 221 KM G+ Sbjct: 197 KMKGMG 202 >gi|269121363|ref|YP_003309540.1| ribonucleoside-diphosphate reductase [Sebaldella termitidis ATCC 33386] gi|268615241|gb|ACZ09609.1| Ribonucleoside-diphosphate reductase [Sebaldella termitidis ATCC 33386] Length = 331 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 73/314 (23%), Positives = 133/314 (42%), Gaps = 28/314 (8%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WE+ L W+ TE D+ W N L + R K+ LG ++L ++ + Sbjct: 21 WEQNLK---QFWIDTEYIPSKDIDSW---NSLEQEMREAYKKALGGLTLLDTLQSHTGMP 74 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKAN 160 + H+ + + + L E +H+ ++ I T++ + E+FN +E + KA Sbjct: 75 KVIDHIDSLQNKSVLSYMCMMETIHAKSYSTIFTTVATTPEINEIFNWVQENEYLQFKAR 134 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 Y + L KDA E + V+ E FY+GF L L +M Sbjct: 135 TIDSYYRKLDK-------KDATDEEIFMALSSSVLLETFLFYSGFFLPLWLAGQGQMGAS 187 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYA 276 + + I+ DES+H F + + E +T E QQ+ L E + E+ Y Sbjct: 188 CDIIKKIIADESIHGVF----VGLLAQEFFKKFTPEDQQRIEKNLKELMYVLYENELKYT 243 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNF 335 E + +GL+ ++Y+++ AN+ +G + F+ E NP ++ + +F Sbjct: 244 DEVYTE--IGLSG-DVKEYIRYNANKALMNLGFDEEFEVKEVNPIVLNGLNVE-TTQHDF 299 Query: 336 FETRVTEYQQGAEL 349 F + T Y++ E+ Sbjct: 300 FSKKSTNYEKALEI 313 >gi|298247783|ref|ZP_06971588.1| ribonucleotide reductase [Ktedonobacter racemifer DSM 44963] gi|297550442|gb|EFH84308.1| ribonucleotide reductase [Ktedonobacter racemifer DSM 44963] Length = 293 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 28/237 (11%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 L++R + +LP++ +K W P ++ + D W+ L +D R ++ Sbjct: 12 LSSRGLRHDILPMRLYHKAKKL-----GTWDPRDIDLSQDCQDWQQ---LAEDPRTRLRN 63 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF--EEAVHSHTFQYIITSLGLDE 142 + F + E V +++ I + L F EE H+ F+ I+ + E Sbjct: 64 LILSFQAGEEAVTLDLLPLIMTVAREGRLEEELFLTTFLWEEGKHTEFFRRILDEVMQAE 123 Query: 143 GELF-----NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 G+L N R++ S L L+ PS + + ++ ++ E Sbjct: 124 GDLHGVRTANNTRDLFSDDLPREMNL----LLTDPSPVNQARAS--------VLYNMIVE 171 Query: 198 GMWFYTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 G+ TG+ L + N M G+ + QYI RDES H+ +G+ +I+++ ++ LW Sbjct: 172 GVLAETGYFSFFRLLTQNNIMPGLQQGIQYIKRDESRHIAYGVFLISRLVAQDKSLW 228 >gi|284009251|emb|CBA76360.1| ribonucleoside-diphosphate reductase beta chain [Arsenophonus nasoniae] Length = 321 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 26/188 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P ++P+ +D+ W N LT +E+ + R +++ N A+ P Sbjct: 31 NFWLPEKIPLSNDIPTW---NTLTKEEKKLTIRVFTGLTLLDTIQNNVGAPALMTDALTP 87 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQY---T 166 + +F EAVH+ ++ I ++L L D + + E ++ KA+ L++ T Sbjct: 88 HEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDDAYQWSEENSALQKKAHLILEHYCNT 147 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 L + V E FY+GF + K+ A+ + Sbjct: 148 HPLKKK------------------IASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRL 189 Query: 227 IMRDESLH 234 I+RDE++H Sbjct: 190 IIRDEAIH 197 >gi|261343568|ref|ZP_05971213.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] gi|282568717|gb|EFB74252.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] Length = 323 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 63/268 (23%), Positives = 108/268 (40%), Gaps = 31/268 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D+ W N LT E+ + R L + ++ V ++A Sbjct: 33 NFWLPEKVPLSNDINSW---NTLTATEKKLTIRVFTGLTLLDTIQNTVGAPCLMA---DA 86 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYT 166 P L +F EAVH+ ++ I ++L D E + E ++ KA L Y Sbjct: 87 QTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDEAYRWSEENSALQNKAKIILSYY 146 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 D L+ V V E FY+GF + K+ A+ + Sbjct: 147 --------------CDSHPLKKK-VASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRL 191 Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 I+RDE++H + G + N E ++ + ++L + EI Y E V Sbjct: 192 IIRDEAIHGYYIGYKFQKSLATYNEQQ-QNEIKEFTFSLLFDLYENEIKYTQELYDS--V 248 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 G + + ++ + AN+ +G E LF Sbjct: 249 GW-SEDVKSFLHYNANKALMNLGYEALF 275 >gi|294669615|ref|ZP_06734682.1| hypothetical protein NEIELOOT_01516 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308528|gb|EFE49771.1| hypothetical protein NEIELOOT_01516 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 296 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 50/217 (23%), Positives = 99/217 (45%), Gaps = 21/217 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P E+ + D + + L + E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------NWALQYT 166 ++ +F E +HS ++ +II ++ D +F+ + I A+A + ++YT Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYT 165 Query: 167 Q---TLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKM 217 Q L + G K +E + L++ + V E + FY FA + M Sbjct: 166 QYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELM 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL 252 G A+ + I RDE+LHL ++N ++ +++P + Sbjct: 226 EGNAKIIKLIARDEALHLTSTQHMLNLMRAGVDDPEM 262 >gi|152971534|ref|YP_001336643.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956383|gb|ABR78413.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 320 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 67/321 (20%), Positives = 126/321 (39%), Gaps = 49/321 (15%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W++ + + + L + ++ V ++A Sbjct: 29 SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DALT 85 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQT 168 P L +F EAVH+ ++ I ++L + F + KA L Y Q Sbjct: 86 PHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFAWSESCDPLQRKAQLMLDYYQ- 144 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 AD+ + + V E FY+GF + K+ A+ + I+ Sbjct: 145 ------------ADEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLII 190 Query: 229 RDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 RDE++H + G+++++ K E E + + +L + E+AY+ E Sbjct: 191 RDEAVHGYYIGYKYQKGLEIVSPGKRE-------ELKNFALDLLMDLYDNELAYSRELYG 243 Query: 282 KG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFF 336 + F ++A C + AN+ +G E LF NP + + + +FF Sbjct: 244 ESGWFDDVSAFLC-----YNANKALMNLGYEALFPAEMAAVNPAILAALSPNADENHDFF 298 Query: 337 ETRVTEYQQG-----AELKWD 352 + Y G A+ WD Sbjct: 299 SGSGSSYVIGKMEETADDDWD 319 >gi|298256105|gb|ADI71331.1| ribonucleoside diphosphate reductase beta subunit-like protein [Ranavirus maxima/9995205/DNK] Length = 202 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 15/186 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 32 PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 91 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 T K ++ ++ + P A V+ EG+ + F +L+ R+ Sbjct: 150 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 196 Query: 216 KMVGIA 221 KM G+ Sbjct: 197 KMKGMG 202 >gi|238896131|ref|YP_002920867.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|238548449|dbj|BAH64800.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 333 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 63/319 (19%), Positives = 124/319 (38%), Gaps = 45/319 (14%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W++ + + + L + ++ V ++A Sbjct: 42 SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DALT 98 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 P L +F EAVH+ ++ I ++L + A W+ Sbjct: 99 PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------HSKEVDAAFAWSESCDPLQR 147 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 G AD+ + + V E FY+GF + K+ A+ + I+RD Sbjct: 148 KAQLMLGYYQADEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRD 205 Query: 231 ESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 E++H + G+++++ K E E + + +L + E+AY+ E + Sbjct: 206 EAVHGYYIGYKYQKGLEIVSPGKRE-------ELKNFALDLLMDLYDNELAYSRELYGES 258 Query: 284 --FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFET 338 F ++A C + AN+ +G E LF NP + + + +FF Sbjct: 259 GWFDDVSAFLC-----YNANKALMNLGYEALFPAEMAAVNPAILAALSPNADENHDFFSG 313 Query: 339 RVTEY-----QQGAELKWD 352 + Y ++ A+ WD Sbjct: 314 SGSSYVIGKMEETADDDWD 332 >gi|119387083|ref|YP_918138.1| ribonucleotide-diphosphate reductase subunit beta [Paracoccus denitrificans PD1222] gi|119377678|gb|ABL72442.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Paracoccus denitrificans PD1222] Length = 329 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 25/188 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + L +ER + R +++ A+ P Sbjct: 39 NFWLPEKVPLSNDVQSWAT---LRPEERELTIRVFTGLTLLDTIQNTVGAPAMMPDALTP 95 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA-----LQYT 166 L AF EAVH+ ++ I ++L L P + A WA LQ Sbjct: 96 HEEAVLSNIAFMEAVHARSYSSIFSTLCL-----------TPEVDAAFRWAEENPHLQQK 144 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 L + G+ ++ + V E FY+GF + K+ A+ + Sbjct: 145 ARLVLEEYKAGSDPLKRK------IASVFLESFMFYSGFYLPMYWSSRAKLTNTADLIRL 198 Query: 227 IMRDESLH 234 I+RDE++H Sbjct: 199 IIRDEAVH 206 >gi|322831489|ref|YP_004211516.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602] gi|321166690|gb|ADW72389.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602] Length = 327 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/268 (19%), Positives = 112/268 (41%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W + + + + L + +++V ++ + Sbjct: 35 TSNFWLPEKVPLSNDIPSWATLSAKEKQLTIRVFTGLTLLDTVQNVVGAPTLM---KDAV 91 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P F EAVH+ ++ I ++L +D E + E ++ KA L Y Sbjct: 92 TPHEEAVYSNICFMEAVHARSYSSIFSTLCATVDVDEAYRWSEENVALQNKAAIILSYY- 150 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + ++ V V E FY+GF + K+ A+ + I Sbjct: 151 ------------DGEDPLMKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 196 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + G + +E+ ++ ++++ ++ + EI Y E + G Sbjct: 197 IRDEAVHGYYIGYKFQKALALESEER-QRQIKEQAFDLIQDLYDNEIRYTEEL----YDG 251 Query: 287 LN-APSCEQYMQFIANRRCHQIGLEPLF 313 + + ++++ + AN+ +G E LF Sbjct: 252 VGWSEDVKKFLHYNANKALMNLGYEALF 279 >gi|227504013|ref|ZP_03934062.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] gi|227199407|gb|EEI79455.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] Length = 329 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 60/271 (22%), Positives = 110/271 (40%), Gaps = 25/271 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL WK+ LT+ E+ R +++ +++ Sbjct: 37 TGNFWLPEKVPVSNDLQSWKT---LTEHEQQTTMRVFAGLTLLDTIQGTVGAVSLLPDAK 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I +L + F E ++ KA + Y Sbjct: 94 TPHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFRWSEENENLQRKAKIVMSY-- 151 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 K AD + V + E FY+GF + K+ A+ + I Sbjct: 152 ----------YKGADPLKKK---VASTLLESFLFYSGFYLPMYFSSRAKLTNTADIIRLI 198 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + G N E P +E + + +L+E EI Y + + +G Sbjct: 199 IRDEAVHGYYIGYKFQNGYN-ELPAEKQEEIKGYTFDLLYELYDNEIDYTEDLYDE--LG 255 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++++++ AN+ + +G E LF E Sbjct: 256 WTE-DVKRFLRYNANKALNNLGFEGLFPADE 285 >gi|288933942|ref|YP_003438001.1| ribonucleoside-diphosphate reductase [Klebsiella variicola At-22] gi|290510980|ref|ZP_06550349.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. 1_1_55] gi|288888671|gb|ADC56989.1| Ribonucleoside-diphosphate reductase [Klebsiella variicola At-22] gi|289775973|gb|EFD83972.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. 1_1_55] Length = 320 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 64/319 (20%), Positives = 123/319 (38%), Gaps = 45/319 (14%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W++ + + + L + ++ V ++A Sbjct: 29 SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DALT 85 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 P L +F EAVH+ ++ I ++L + A W+ Sbjct: 86 PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------HSKEVDAAFAWSESCEPLQR 134 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 G AD+ + + V E FY+GF + K+ A+ + I+RD Sbjct: 135 KAQLMLGYYQADEPLKKK--IASVFLESFLFYSGFWLPMHFSSRGKLTNTADLIRLIIRD 192 Query: 231 ESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 E++H + G+++++ K E E + + +L + E+AY+ E + Sbjct: 193 EAVHGYYIGYKYQKGLEIVSPGKRE-------ELKNFALDLLMDLYDNELAYSRELYGES 245 Query: 284 --FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFET 338 F ++A C + AN+ +G E LF NP + + + +FF Sbjct: 246 GWFDDVSAFLC-----YNANKALMNLGYEALFPAEMAAVNPAILAALSPNADENHDFFSG 300 Query: 339 RVTEYQQG-----AELKWD 352 + Y G A+ WD Sbjct: 301 SGSSYVIGKTEETADDDWD 319 >gi|259417680|ref|ZP_05741599.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter sp. TrichCH4B] gi|259346586|gb|EEW58400.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter sp. TrichCH4B] Length = 325 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 59/265 (22%), Positives = 106/265 (40%), Gaps = 24/265 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W LT DE+ + R +++ + + P Sbjct: 34 NFWLPEKVPLSNDIQSWSQ---LTPDEQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITP 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ + ++L + E F E + AK+ L Sbjct: 91 HEEAVLSNIAFMEAVHARSYSSVFSTLCQTTEVDEAFRWSAENEHLQAKSRLILDEYDAT 150 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 +SP + V E FY+GF + ++ A+ + I+R Sbjct: 151 ASPLRKK--------------IASVFLESFLFYSGFYLPMHWSSRARLTNTADLIRLIIR 196 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E KE + + +L + +E Y E + G +GL Sbjct: 197 DEAIH-GYYIGYKFQRGMERLSEAERKELKDFAFGLLFDLYDIEARYT-EQLYDG-LGLT 253 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 + ++ + AN+ +G E LF Sbjct: 254 -EDVKNFLHYNANKALQNLGFEALF 277 >gi|298256095|gb|ADI71326.1| ribonucleoside diphosphate reductase beta subunit-like protein [Cod iridovirus/15/04.11.92/DNK] gi|298256103|gb|ADI71330.1| ribonucleoside diphosphate reductase beta subunit-like protein [Pike-perch iridovirus] Length = 202 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 15/186 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 32 PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 91 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 T K ++ ++ + P A V+ EG+ + F +L+ R+ Sbjct: 150 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 196 Query: 216 KMVGIA 221 KM G+ Sbjct: 197 KMKGMG 202 >gi|307944765|ref|ZP_07660103.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp. TrichSKD4] gi|307771979|gb|EFO31202.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp. TrichSKD4] Length = 329 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 67/299 (22%), Positives = 122/299 (40%), Gaps = 39/299 (13%) Query: 29 SDVNQLLPLKYGWAW---EKYLSACN----NHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 SD+ + +P W +K L N N W+P +VP+ +D+ W + + D+++L Sbjct: 8 SDMKRAVPRAVNWNRLQDDKDLEIWNRLTVNFWLPEKVPLSNDIQSWATLH--PDEQQLT 65 Query: 82 IK--RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL- 138 I+ L + ++ V ++ P L AF EAVH+ ++ + ++L Sbjct: 66 IRVFTGLTLLDTIQNTVGAPTLMP---DALTPHEEAVLTNIAFMEAVHARSYSSVFSTLC 122 Query: 139 -GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F E + AK+ L SP V V E Sbjct: 123 QTADVDEAFRWSEENEHLQAKSRLILDEYGAAGSPLRKK--------------VASVFLE 168 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH---LNFGIDVINQIKIENPHLWT 254 FY+GF + K+ A+ + I+RDE++H + + + + E Sbjct: 169 SFLFYSGFYLPMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRMQETLSEAERQEI 228 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 K+F + +++ + +E Y E++ G VGL + ++ + AN+ +G E LF Sbjct: 229 KDF---AFSLMFDLYEIEGKYT-ESLYDG-VGLTE-DVKHFLHYNANKALMNLGYEALF 281 >gi|269957220|ref|YP_003327009.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica DSM 15894] gi|269305901|gb|ACZ31451.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica DSM 15894] Length = 326 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 64/305 (20%), Positives = 122/305 (40%), Gaps = 32/305 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + L++ E+ M R +++ +++ Sbjct: 34 VGNFWVPEKVPVSNDIQSWAT---LSEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAL 90 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 P AF E+VH+ ++ I ++L +DE F P++ KA L+Y Sbjct: 91 TPHEEAVYTNIAFMESVHAKSYSSIFSTLISTKEIDEA--FAWSEANPNLQRKAEIVLEY 148 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 + D + V + E FY+GF + K+ A+ + Sbjct: 149 YR-------------GDDPLKRK--VASTMLESFLFYSGFYAPMYWSSRAKLTNTADLIR 193 Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 I+RDE++H + G + +E+ E + + +L E E+ Y G Sbjct: 194 LIIRDEAVHGYYIGYKFQKGLALESQER-QDEIKAYTFELLFELYENEVEYTEALY--GE 250 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVT 341 +GL ++++++ AN+ +G E LF E NP + + + +FF + Sbjct: 251 LGLT-EDVKKFLRYNANKALMNLGYEALFPKEETDVNPAILAALSPNADENHDFFSGSGS 309 Query: 342 EYQQG 346 Y G Sbjct: 310 SYVIG 314 >gi|319404590|emb|CBI78196.1| ribonucleoside-diphosphate reductase beta chain [Bartonella rochalimae ATCC BAA-1498] gi|319407580|emb|CBI81230.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp. 1-1C] Length = 324 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 55/271 (20%), Positives = 111/271 (40%), Gaps = 37/271 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W S LT++ER + R +++ +++ Sbjct: 34 NFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAISLMADAVTE 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L ++ + F E + KA L++ + Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENTYLQKKARLILEHYE-- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 AD+ + + ++ E FY+GF + K+ A+ + I+R Sbjct: 149 -----------ADEPLKKKIASTFL--ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 195 Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H G +++ K +E + + +L + +E Y + Sbjct: 196 DEAVHGYYIGYKFQLGFAKLDEAK-------KQEIKDFAFNLLFDLYNIECKYTEDLYDA 248 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +GL + ++ + AN+ +G E LF Sbjct: 249 --IGLT-EDVKVFLHYNANKALMNLGFEALF 276 >gi|86359305|ref|YP_471197.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli CFN 42] gi|86283407|gb|ABC92470.1| ribonucleoside-diphosphate reductase, beta subunit protein [Rhizobium etli CFN 42] Length = 324 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 62/268 (23%), Positives = 119/268 (44%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ + + Sbjct: 32 TGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGAVGLMEDAV 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L ++ + YR ++ N LQ L Sbjct: 89 TPHEEAVLSNVSFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSAL 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + +G DA ++ + +F+ E FY+GF + K+ A+ + I+R Sbjct: 143 IMEQYASG--DALKKKVASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIR 195 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFV 285 DE++H + I Q +E ++E +Q+ + + LLE+ A E + G V Sbjct: 196 DEAVH-GYYIGYKFQRGLET---LSEERRQEIKYFAFD-LLLELYDNEAKYTEALYDG-V 249 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 GL + ++++ + AN+ +G E LF Sbjct: 250 GL-SEDVKKFLHYNANKALMNLGYEALF 276 >gi|326772780|ref|ZP_08232064.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces viscosus C505] gi|326637412|gb|EGE38314.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces viscosus C505] Length = 325 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 65/303 (21%), Positives = 122/303 (40%), Gaps = 28/303 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + L + E+ M R +++ +++ Sbjct: 33 TGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAR 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P L AF E+VH+ ++ I ++L + E F E ++ KA L Y Sbjct: 90 TPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENANLQRKARIILDY-- 147 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 + D E + V + E FY+GF + K+ A+ + I Sbjct: 148 ----------YRGDDPEKRK---VASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLI 194 Query: 228 MRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + I Q+ + E+ +E + + +L E E Y + + +G Sbjct: 195 IRDEAVH-GYYIGYKYQLAVRESSPERQQELKDYTFDLLMELYDNEEQYTEDLYDE--LG 251 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343 L ++++++ AN+ +G E LF NP S + + +FF + Y Sbjct: 252 L-TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILASLSPNADENHDFFSGSGSSY 310 Query: 344 QQG 346 G Sbjct: 311 VMG 313 >gi|320531976|ref|ZP_08032874.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320135808|gb|EFW27858.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 324 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 66/305 (21%), Positives = 122/305 (40%), Gaps = 32/305 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + L + E+ M R +++ +++ Sbjct: 32 TGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAR 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P L AF E+VH+ ++ I ++L + E F E ++ KA L Y Sbjct: 89 TPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENENLQRKARIILDY-- 146 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 + D E + V + E FY+GF + K+ A+ + I Sbjct: 147 ----------YRGDDPEKRK---VASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLI 193 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF--- 284 +RDE++H + I Q+ + + E QQ+ + E L+E+ E + Sbjct: 194 IRDEAVH-GYYIGYKYQLAVRES---SPERQQELKDYTFE-LLMELYDNEEQYTEDLYDE 248 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVT 341 +GL ++++++ AN+ +G E LF NP S + + +FF + Sbjct: 249 LGL-TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILASLSPNADENHDFFSGSGS 307 Query: 342 EYQQG 346 Y G Sbjct: 308 SYVMG 312 >gi|262285102|gb|ACY41130.1| ribonucleotide reductase subunit 2 [Wood mouse herpesvirus] Length = 305 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 72/304 (23%), Positives = 118/304 (38%), Gaps = 42/304 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W P+++P+ D+A N TD E K F +E LV NI + + + Sbjct: 26 NRWFPSQIPLSSDVAGIAQLNA-TDRE--FYKFLFVFLGLAEKLVNFNIE-DLVKEFNCH 81 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV------PSITAKANWALQY 165 + Y Q E +H + I+ G++ + P++ AK +W Sbjct: 82 DATHYYAEQMAMENIHGKVYANILQLFF--NGDMMKLKEYAVKVVADPTLKAKLDW---- 135 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQY 224 L + T T+ + + +++ EG++F + F I SL R M+ GI Sbjct: 136 ---LHTRVKNTKTR-------AEKVLIFLLIEGIFFISSFYSI-SLFRVRGMLNGICLAN 184 Query: 225 QYIMRDESLHLNFGIDVINQI--KIENPH-LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 YI +DE LH + N + E P W K Q++ +E+ YA Sbjct: 185 DYISKDELLHTRAAAVLYNTLIPAKERPDPAWIKRLFQEA---------VEVEYAFIAAK 235 Query: 282 KGFVGLNAPS-CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 V L P ++++Q +R IG+ L+ + P K NFFE Sbjct: 236 SKNVTLVVPGEIKRFLQATCDRILQSIGVGALYG-SHAPVTCPLSYNGCIKSVNFFEREG 294 Query: 341 TEYQ 344 T+Y Sbjct: 295 TDYS 298 >gi|212716021|ref|ZP_03324149.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM 16992] gi|212661388|gb|EEB21963.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM 16992] Length = 330 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 69/360 (19%), Positives = 142/360 (39%), Gaps = 50/360 (13%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI +R+ + D+ + + N+L K W++ N W+P +VP+ +DL Sbjct: 1 MAPISVPRQRIKLIDRV---SAINWNKLEDDKDLEVWDR---LTGNFWLPEKVPVSNDLP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +W++ +++ E + R +++ +++ P AF E+V Sbjct: 55 VWRA---MSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLG----LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 H+ ++ I ++L +DE F+ E + KA L Y + S + Sbjct: 112 HAKSYSSIFSTLCSTRQIDEA--FSWSEENEYLQRKARIVLDYYEGDSPLKRKVAS---- 165 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF----- 237 + E FY+GF + K+ A+ + I+RDE++H + Sbjct: 166 -----------TLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKY 214 Query: 238 --GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295 G++ +++ K E + + +L+E E+ Y VGL E++ Sbjct: 215 QKGLERVSEDK-------RGELRDYTYDLLNELYDNEVEYTRSLYEP--VGLTQ-DVEKF 264 Query: 296 MQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +++ N+ +G LF NP + + + +FF + Y G ++ D Sbjct: 265 LRYNGNKALMNLGYPALFPQEICDVNPSILAALSPNADENHDFFSGSGSSYVMGKSVETD 324 >gi|123441277|ref|YP_001005264.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088238|emb|CAL11027.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 323 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 65/302 (21%), Positives = 127/302 (42%), Gaps = 30/302 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W LT DE+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAK---LTADEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 +F EAVH+ ++ I ++L + D E + E + KA+ LQ+ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSEENGPLQKKADIILQHYNN- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D ++ + +F+ E FY+GF + ++ A+ + I+R Sbjct: 149 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRARLTNTADLIRLIIR 194 Query: 230 DESLHLNF-GIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 DE++H + G + K++N +E + + +L + EI Y E++ G VG Sbjct: 195 DEAVHGYYIGYKFQKGLEKVDNNR--RQEIKNFAFDLLQDLYDNEIHYT-ESLYDG-VGW 250 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344 ++++ + AN+ +G E LF ++ NP + + + +FF + Y Sbjct: 251 -TEDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSPNADENHDFFSGSGSSYV 309 Query: 345 QG 346 G Sbjct: 310 IG 311 >gi|261820460|ref|YP_003258566.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium wasabiae WPP163] gi|261604473|gb|ACX86959.1| Ribonucleoside-diphosphate reductase [Pectobacterium wasabiae WPP163] Length = 320 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 56/271 (20%), Positives = 116/271 (42%), Gaps = 33/271 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W + N + + L + ++ + ++ Sbjct: 28 TSNFWLPEKVPLSNDIPSWGTLNPRERQLTIRVFTGLTLLDTIQNTLGAPTLMP---DAV 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166 P L +F EAVH+ ++ I ++L L E+ + YR E P++ K++ L + Sbjct: 85 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYRWSEENPALQKKSDIILSHY 143 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 ++ D ++ V V E FY+GF + K+ A+ + Sbjct: 144 RS-------------DDPLMKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRL 188 Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM--PKG 283 I+RDE++H + G + +P QQ+ + ++ LL+ Y +E + + Sbjct: 189 IIRDEAVHGYYIGYKFQRGLAKADPAR-----QQQVKNFAYD--LLQDLYDNEVLYTQEL 241 Query: 284 FVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313 + G+ ++++ + AN+ +G E LF Sbjct: 242 YDGVGWTEDVKKFLHYNANKALMNLGYEALF 272 >gi|311068263|ref|YP_003973186.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus atrophaeus 1942] gi|310868780|gb|ADP32255.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus atrophaeus 1942] Length = 328 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 64/298 (21%), Positives = 123/298 (41%), Gaps = 20/298 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + DL WK D + + L + + N + + H+ + Sbjct: 30 WLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQ---GNTGMPIVADHVEGHQR 86 Query: 114 RQYLLRQAF-EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170 + L A E AVH+ ++ I +L E E+F ++ + KA + Q++ Sbjct: 87 KAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKFLQKKAQIIVGLYQSI- 145 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 K D+ L V V E FY+GF L K++ E I+RD Sbjct: 146 --------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E++H + + +I + P E ++ S +L + E+ Y + + VGL + Sbjct: 198 EAIHGVYIGLLAQEIYNKQPEEKKAELREFSIELLEQLYENELEYTEDLYDQ--VGL-SH 254 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++++++ AN+ +G + F+ E NP ++ + K +FF + Y++ Sbjct: 255 DVKKFIRYNANKALMNLGFDSYFEEEEINPIV-LNGLNTKTKSHDFFSMKGNGYKKAT 311 >gi|168262084|ref|ZP_02684057.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349275|gb|EDZ35906.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 319 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/273 (21%), Positives = 111/273 (40%), Gaps = 39/273 (14%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 P L +F EAVH+ ++ I ++L + + A W+ Sbjct: 85 --------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAWS 125 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + +D+ + + V E FY+GF + K+ A+ Sbjct: 126 EENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTAD 183 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I+RDE++H + I QI ++ + KE + + +L E EI Y Sbjct: 184 LIRLIIRDEAVH-GYYIGYKYQIALQKLSAIERKELKLFALDLLMELYDNEICYTEALYA 242 Query: 282 K-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + G+V + ++ + AN+ +G E LF Sbjct: 243 ETGWVN----DVKAFLCYNANKALMNLGYEALF 271 >gi|70937204|ref|XP_739440.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56516443|emb|CAH87750.1| hypothetical protein PC302623.00.0 [Plasmodium chabaudi chabaudi] Length = 72 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 37/54 (68%), Gaps = 2/54 (3%) Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 QY++F+A+R +G +F +++NPF WM ++I L+ + NFFE RV +YQ+ Sbjct: 5 QYIEFVADRLLECLGCSKVF-HSKNPFSWM-DLISLQGKTNFFEKRVADYQKSG 56 >gi|300718018|ref|YP_003742821.1| ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia billingiae Eb661] gi|299063854|emb|CAX60974.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia billingiae Eb661] Length = 319 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 60/268 (22%), Positives = 116/268 (43%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHL 108 +N W+P +VP+ +D+ W S N D+++L I+ G + + N + A+ Sbjct: 27 TSNFWLPEKVPLSNDIPAWNSLNA--DEQQLTIRVFTGL--TLLDTIQNTVGAPALMADA 82 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYT 166 P + +F EAVH+ ++ I ++L D + + + KA L++ Sbjct: 83 VTPHEEAVMSNVSFMEAVHARSYSSIFSTLCHTTDVDAAYAWSEDNQPLQRKAEIILEHY 142 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 D ++ + +F+ E FY+GF + K+ A+ + Sbjct: 143 H----------HDDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRGKLTNTADLIRL 187 Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 I++DE++H + G ++ E+P E QQ + +L E+AY E + G V Sbjct: 188 IIKDEAVHGYYIGYKYQKALEKESPAR-KDELQQFAVELLLALYENELAYT-EALYDG-V 244 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 G + ++++ + AN+ +G E LF Sbjct: 245 GW-SEEVKKFLHYNANKALMNLGYEALF 271 >gi|88801652|ref|ZP_01117180.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter irgensii 23-P] gi|88782310|gb|EAR13487.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter irgensii 23-P] Length = 424 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 78/342 (22%), Positives = 149/342 (43%), Gaps = 30/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSAC-NNHWMPTEVPMQDDLALWK 69 QA ++ NV +KR+ L P Y A +Y+ A +++W+ TE D+ +K Sbjct: 95 QARIRKRNVFEKRL--------NLKPYDYP-ALTEYVDAIRHSYWIHTEFNYTSDIQDFK 145 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFEEAVHS 128 + L++ E+ IK + A S+ VA IY+ + PE A E H Sbjct: 146 AY--LSETEKSAIKNTM--LAISQIEVAVKTFWGDIYKKMPKPEIGAVGSTFAESEVRHH 201 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 + +++ LGL+ F ++ P + + N+ + + S + ++EF + Sbjct: 202 DAYSHLLEILGLNNE--FENLKKNPVMMRRVNYLEGALKNVKS--------EDNKEFSES 251 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + +F + E + ++ F I++ + N + GI+ + ++E +H +FGID+I IK Sbjct: 252 IILFSLFIEHVSLFSQFLIIMAFNKHKNVLKGISNVVEATSKEEQIHGDFGIDIIKIIKE 311 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQ 306 ENP + ++ + M EA + E KG + L +++++ N+ Sbjct: 312 ENPDWFDEDHSLMVQEMCEEAFISESKIIDWIFEKGELDFLPKNVIKEFIKNRFNKSLGS 371 Query: 307 IGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQ 345 IG+ +F+ W + I K +FF R Y + Sbjct: 372 IGIAKIFEIDATLLAQTDWFDDEIIGTKHGDFFVKRSINYSK 413 >gi|317049232|ref|YP_004116880.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b] gi|316950849|gb|ADU70324.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b] Length = 322 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 64/303 (21%), Positives = 119/303 (39%), Gaps = 28/303 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +DL W++ + + + L + ++++ + Sbjct: 30 TSNFWLPEKVPLSNDLPAWQTLDKQQQQLTIRVFTGLTLLDTIQNVIG---APGLMEDAL 86 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P L +F EAVH+ ++ I ++L D + E ++ KA L++ + Sbjct: 87 TPHEEAVLSNVSFMEAVHARSYSSIFSTLCNTADVDAAYRWSEENEALQNKAKIVLEHYR 146 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 AD + + V E FY+GF + K+ A+ + I Sbjct: 147 -------------ADDPLKKK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLI 191 Query: 228 MRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + I Q +EN +E QQ + +L E+ Y VG Sbjct: 192 IRDEAVH-GYYIGYKYQKALENVDDARREELQQFAIELLLALYENEVVYTEALYAD--VG 248 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEY 343 A + ++ + AN+ +G E LF T NP + + + +FF + Y Sbjct: 249 W-AEEVKTFLHYNANKALMNLGYEALFPAELTTVNPAILAALSPNADENHDFFSGSGSSY 307 Query: 344 QQG 346 G Sbjct: 308 VMG 310 >gi|227529511|ref|ZP_03959560.1| ribonucleoside-diphosphate reductase [Lactobacillus vaginalis ATCC 49540] gi|227350596|gb|EEJ40887.1| ribonucleoside-diphosphate reductase [Lactobacillus vaginalis ATCC 49540] Length = 339 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 74/313 (23%), Positives = 125/313 (39%), Gaps = 32/313 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L D + + G +++ + + Sbjct: 28 TWEK---LTEQFWLDTRIPVSNDLDDWRE---LDTDHQWTVGHVFGGLTLLDTVQSEAGL 81 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 A+ + + L F E+VH+ ++ I ++L E E+ ++ S N Sbjct: 82 TALKQDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPE-EINEIFDWSDSEEYLQNK 140 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 A+Q +P K FL E FY+GF L NK+ +A Sbjct: 141 AVQIANIYRNPEEDPLKKKVANVFL----------ETFLFYSGFYTPLYYLGHNKLNNVA 190 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAH 277 E + I+RDES+H + I Q+ + H T++ QQ + L+E E Y H Sbjct: 191 EIIKLILRDESVHGTY-IGYKFQVGM---HDRTEKQQQDMKDWMYNFLYELYDNEEKYTH 246 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKN 334 + VG ++++ AN+ +G +PLF T NP M+ + + Sbjct: 247 LLYDQ--VGW-TEDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MNGISTSTANHD 302 Query: 335 FFETRVTEYQQGA 347 FF Y+ GA Sbjct: 303 FFSQVGNGYRLGA 315 >gi|298256093|gb|ADI71325.1| ribonucleoside diphosphate reductase beta subunit-like protein [Bohle iridovirus] Length = 202 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 15/186 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 32 PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 91 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYGEM 149 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 T K ++ ++ + P A V+ EG+ + F +L+ R+ Sbjct: 150 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 196 Query: 216 KMVGIA 221 KM G+ Sbjct: 197 KMKGMG 202 >gi|262043918|ref|ZP_06017006.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038772|gb|EEW39955.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 320 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 64/319 (20%), Positives = 123/319 (38%), Gaps = 45/319 (14%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W++ + + + L + ++ V ++A Sbjct: 29 SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTELTLLDTIQNTVGAPALMA---DALT 85 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 P L +F EAVH+ ++ I ++L + A W+ Sbjct: 86 PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------HSKEVDAAFAWSESCDPLQR 134 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 G AD+ + + V E FY+GF + K+ A+ + I+RD Sbjct: 135 KAQLMLGYYQADEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRD 192 Query: 231 ESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 E++H + G+++++ K E E + + +L + E+AY+ E + Sbjct: 193 EAVHGYYIGYKYQKGLEIVSPGKRE-------ELKNFALDLLMDLYDNELAYSRELYGES 245 Query: 284 --FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFET 338 F ++A C + AN+ +G E LF NP + + + +FF Sbjct: 246 GWFDDVSAFLC-----YNANKALMNLGYEALFPAEMAAVNPAILAALSPNADENHDFFSG 300 Query: 339 RVTEYQQG-----AELKWD 352 + Y G A+ WD Sbjct: 301 SGSSYVIGKMEETADDDWD 319 >gi|319891738|ref|YP_004148613.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161434|gb|ADV04977.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus pseudintermedius HKU10-03] gi|323465093|gb|ADX77246.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus pseudintermedius ED99] Length = 320 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 73/299 (24%), Positives = 126/299 (42%), Gaps = 28/299 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WKS LT+ E+ K+ L ++ A++ + I H + Sbjct: 25 WVETEFKVSKDIASWKS---LTEAEQDTFKKALAGLTGLDTHQADDGMPLIMLHTQDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMY-REVPSITAKANWALQYTQTLS 170 + E +H+ ++ +I T+L + EL +++ E P + K+ + L Sbjct: 82 KAVYSFMGMMEQIHAKSYSHIFTTLLPSKETDELLDVWVLEEPHLKYKSEKIVGTYHKLW 141 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + DQ + V V E F++GF L L +M E + I+ D Sbjct: 142 GKEASI----YDQYMAR---VASVFLETFLFFSGFYYPLYLAGQGRMTTSGEIIRKILLD 194 Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE-TMPKGF---V 285 ES+H F G+D ++ E L E Q+ + M LLE YA+E + + + Sbjct: 195 ESIHGVFTGLDA-QSLRNE---LSESEKQKADKEMYQ---LLEDLYANEASYTRSLYDPI 247 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEY 343 GL Y+++ N+ +G EP F+ E P + +D K +FF + Y Sbjct: 248 GL-TDDVMNYVRYNGNKALSNLGFEPYFEEREFS-PIIENALDTSTKNHDFFSVKGDGY 304 >gi|197294249|ref|YP_001798790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Phytoplasma australiense] gi|171853576|emb|CAM11447.1| Ribonucleotide reductase, beta subunit [Candidatus Phytoplasma australiense] Length = 344 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 61/273 (22%), Positives = 113/273 (41%), Gaps = 20/273 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS-NPE 112 W P ++ +Q DLA W N L+D+E+ RNL ++ + + I + N Sbjct: 34 WRPEDISLQGDLAAW---NHLSDEEKTTYTRNLLVLTFLDTYQGDLGIPVIANSMDENKH 90 Query: 113 CRQYLLR--QAFEEAVHSHTFQYIITSLGLDE--------GELFNMYREVPSITAKANWA 162 ++ L A E AVH+ ++ I TS +E GE + + I + Sbjct: 91 QKKATLNFMGAMENAVHAKSYSNIFTSYLSNEDINQLFVWGEKQVNLQNIMKIIFRVYED 150 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L+Y L + ++ Q+ V E FY+GF L K++ E Sbjct: 151 LEYNIYLKKYQLSEFSELQYQKNQWKAMAISVFLETWLFYSGFYYPLYFYGQGKLMQAGE 210 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H G+ I ++ E HL+ + +++ +T L E + + Sbjct: 211 IINLIIRDESIH---GV-YIGRLATELYHLFDDDTKKELKTWLDATMKTLYKEQMELVKE 266 Query: 283 GFVGLN--APSCEQYMQFIANRRCHQIGLEPLF 313 + L+ ++++++ AN+ +G + F Sbjct: 267 VYSKLSYLEEDVQKFVRYNANKALMNLGFDAFF 299 >gi|240849861|ref|YP_002971249.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella grahamii as4aup] gi|240266984|gb|ACS50572.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella grahamii as4aup] Length = 324 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 56/271 (20%), Positives = 108/271 (39%), Gaps = 37/271 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W S LTD+ER + R +++ +++ Sbjct: 34 NFWLPEKVPLSNDIPSWSS---LTDEERKLTIRVFTGLTLLDTIQNTVGAISLLADAITE 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L ++ + F E + KA L+ + Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENIHLQKKARLVLERYE-- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 A+ + + + E FY+GF + K+ A+ + I+R Sbjct: 149 -----------ANDPLKKK--IASTLLESFLFYSGFYLPMYWASRAKLTNTADLIRLIIR 195 Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H G +++ K KE + + +L + +E Y + Sbjct: 196 DEAVHGYYIGYKFQLGFAKLDEAK-------KKEIKDFAFNLLFDLYNIECKYTEDLYDA 248 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +GL + ++ + AN+ +G E LF Sbjct: 249 --LGL-TEDVKIFLHYNANKALMNLGFEALF 276 >gi|228473186|ref|ZP_04057941.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275336|gb|EEK14128.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga gingivalis ATCC 33624] Length = 319 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 70/297 (23%), Positives = 114/297 (38%), Gaps = 23/297 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ +EV D+ +KS L + E +KR L A E V +Y PE Sbjct: 30 WVHSEVEFTADIQDFKSNLSLVEKE--AVKRALLGIAQVEVAV-KTFWGDLYDVFPKPEF 86 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 A E HS + ++ LG + F EVP + T+ Sbjct: 87 NGLGATFAECEFRHSEAYSRLLEVLGYNNE--FEALLEVPIFKER--------NTILKEY 136 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDES 232 ++A ++ + F ++ E ++ FA ILS R M +A + DE Sbjct: 137 LAKNRENA----MERILFFTLIIENASLFSQFATILSFTRFKGYMKNVANIIAWTSVDEQ 192 Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPS 291 +H N GI ++ I ENP TK ++++ + E LLE +G + + Sbjct: 193 VHANAGIYILKTIFDENPEFRTKA-KKEATEFIREYILLEDKMLDWIFEEGELEFFSKKD 251 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 YM++ + Q+ L F T P W E + + + +FF R T Y + Sbjct: 252 LANYMRYRLDDALTQLDLGKPFGITAEEAKPMLWFEEEVFVNELDDFFAKRPTAYTK 308 >gi|116511803|ref|YP_809019.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus lactis subsp. cremoris SK11] gi|125624347|ref|YP_001032830.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus lactis subsp. cremoris MG1363] gi|116107457|gb|ABJ72597.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactococcus lactis subsp. cremoris SK11] gi|124493155|emb|CAL98119.1| ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis subsp. cremoris MG1363] gi|300071131|gb|ADJ60531.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus lactis subsp. cremoris NZ9000] Length = 325 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 120/286 (41%), Gaps = 42/286 (14%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + WEK S W+ T VP+ +DL W+ L D L + +S+ + Sbjct: 28 YTWEKLTS---QFWLDTRVPVSNDLDDWRKLPQLERDTFAKAFAGLTLLDTLQSVDGAEV 84 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAK 158 + R C + F E+VH+ ++ I ++L + ELFN Sbjct: 85 LKHDARTPQEIACFNNI---QFMESVHAKSYSTIFSTLNTKKEIEELFNW--------VD 133 Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKM 217 N +Q + + + +GT A Q+ + +F+ E FY+GF +L LG NKM Sbjct: 134 TNVYMQTKAEIINKIYESGT--ALQKKVASVFL-----ETCLFYSGFYTPLLYLGN-NKM 185 Query: 218 VGIAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + AE + I+RDES+H G + +++ + EF+ +L++ Sbjct: 186 INSAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDE-------QSEFRDWMYELLYKLYE 238 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 E Y+H K VG ++++ AN+ +G +PLF T Sbjct: 239 NEENYSHLLYDK--VGW-TDEVLTFLRYNANKALMNLGQDPLFPDT 281 >gi|318606878|emb|CBY28376.1| ribonucleotide reductase of class Ib (aerobic),beta subunit [Yersinia enterocolitica subsp. palearctica Y11] Length = 323 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 65/302 (21%), Positives = 127/302 (42%), Gaps = 30/302 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W LT DE+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAK---LTADEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 +F EAVH+ ++ I ++L + D E + E + KA+ LQ+ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSEENGPLQKKADIILQHYNN- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D ++ + +F+ E FY+GF + ++ A+ + I+R Sbjct: 149 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRARLTNTADLIRLIIR 194 Query: 230 DESLHLNF-GIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 DE++H + G + K++N +E + + +L + EI Y E++ G VG Sbjct: 195 DEAVHGYYIGYKFQKGLEKLDNNR--RQEIKNFTFDLLQDLYDNEIHYT-ESLYDG-VGW 250 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344 ++++ + AN+ +G E LF ++ NP + + + +FF + Y Sbjct: 251 -TEDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSPNADENHDFFSGSGSSYV 309 Query: 345 QG 346 G Sbjct: 310 IG 311 >gi|251788642|ref|YP_003003363.1| Ribonucleoside-diphosphate reductase [Dickeya zeae Ech1591] gi|247537263|gb|ACT05884.1| Ribonucleoside-diphosphate reductase [Dickeya zeae Ech1591] Length = 320 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 66/295 (22%), Positives = 113/295 (38%), Gaps = 35/295 (11%) Query: 31 VNQLLPLKYGWAW-----EKYLSACN----NHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 ++QL PLK W EK L N N W+P ++ + +D+ W LTD ER + Sbjct: 1 MSQLSPLK-AINWNRPQDEKDLEVWNRLTANFWLPEKIALSNDMPSWAQ---LTDAERQL 56 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 R ++L A+ P L F EAVH+ ++ I ++L L Sbjct: 57 TLRVFTGLTLLDTLQNTQGAPALMADALTPHEEAVLSNIGFMEAVHARSYSAIFSTLCLT 116 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + +W+ S + DQ + + V E F Sbjct: 117 N-----------EVDCAYHWSEHNKPLQSKAALILSLYRHDQPLKKK--IASVFLESFLF 163 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF-GIDVINQIK-IENPHLWTKEFQQ 259 Y+GF + ++ A+ + I+RDE++H + G +K + P ++ Q Sbjct: 164 YSGFYLPMYWASRGRLTNTADLIRLIIRDEAVHGYYIGYKYQQGLKRLSTPE--QRDLQL 221 Query: 260 KSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + +L E+ Y HE G+ G +++ + AN+ +G E LF Sbjct: 222 FAYELLQTLYDNEVDYTHELYDSVGWSG----DVIKFLHYNANKALMNLGYEALF 272 >gi|15672956|ref|NP_267130.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus lactis subsp. lactis Il1403] gi|12723917|gb|AAK05072.1|AE006332_1 ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis subsp. lactis Il1403] gi|326406518|gb|ADZ63589.1| ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis subsp. lactis CV56] Length = 325 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 40/285 (14%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + WEK S W+ T VP+ +DL W+ L D L + +S+ + Sbjct: 28 YTWEKLTS---QFWLDTRVPVSNDLDDWRKLPQLERDTFAKAFAGLTLLDTLQSVDGAEV 84 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAK 158 + R C + F E+VH+ ++ I ++L + ELFN Sbjct: 85 LKHDARTPQEIACFNNI---QFMESVHAKSYSTIFSTLNTKKEIEELFNW--------VD 133 Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 N +Q + + + +GT + V V E FY+GF L NKM+ Sbjct: 134 TNVYMQTKAEIINKIYESGTPLQKK-------VASVFLETCLFYSGFYTPLRYLGNNKMI 186 Query: 219 GIAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 AE + I+RDES+H G + +++ + EF+ +L++ Sbjct: 187 NSAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDE-------QGEFRDWMYELLYQLYEN 239 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 E Y+H K VG ++++ AN+ +G +PLF T Sbjct: 240 EEKYSHLLYDK--VGW-TDEVLTFLRYNANKALMNLGQDPLFPDT 281 >gi|281491477|ref|YP_003353457.1| ribonucleoside-diphosphate reductase subunit beta [Lactococcus lactis subsp. lactis KF147] gi|281375195|gb|ADA64708.1| Ribonucleoside-diphosphate reductase, beta chain [Lactococcus lactis subsp. lactis KF147] Length = 325 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 67/285 (23%), Positives = 113/285 (39%), Gaps = 40/285 (14%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + WEK S W+ T VP+ +DL W+ L D L + +S+ + Sbjct: 28 YTWEKLTS---QFWLDTRVPVSNDLDDWRKLPQLERDTFAKAFAGLTLLDTLQSVDGAEV 84 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAK 158 + R C + F E+VH+ ++ I ++L + ELFN Sbjct: 85 LKHDARTPQEIACFNNI---QFMESVHAKSYSTIFSTLNTKKEIEELFNW--------VD 133 Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 N +Q + + + +GT + V V E FY+GF L NKM+ Sbjct: 134 TNVYMQTKAEIINKIYESGTPLQKK-------VASVFLETCLFYSGFYTPLRYLGNNKMI 186 Query: 219 GIAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 AE + I+RDES+H G + +++ + EF+ +L++ Sbjct: 187 NSAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDE-------QGEFRDWMYELLYQLYEN 239 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 E Y+H K VG ++++ AN+ +G +PLF T Sbjct: 240 EEKYSHLLYDK--VGW-TDEVLTFLRYNANKALMNLGQDPLFPDT 281 >gi|332162772|ref|YP_004299349.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667002|gb|ADZ43646.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 323 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 65/302 (21%), Positives = 127/302 (42%), Gaps = 30/302 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W LT DE+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAK---LTADEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 +F EAVH+ ++ I ++L + D E + E + KA+ LQ+ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSEENGPLQKKADIILQHYNN- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D ++ + +F+ E FY+GF + ++ A+ + I+R Sbjct: 149 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRARLTNTADLIRLIIR 194 Query: 230 DESLHLNF-GIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 DE++H + G + K++N +E + + +L + EI Y E++ G VG Sbjct: 195 DEAVHGYYIGYKFQKGLEKLDNNR--RQEIKNFAFDLLQDLYDNEIHYT-ESLYDG-VGW 250 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344 ++++ + AN+ +G E LF ++ NP + + + +FF + Y Sbjct: 251 -TEDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSPNADENHDFFSGSGSSYV 309 Query: 345 QG 346 G Sbjct: 310 IG 311 >gi|213609160|ref|ZP_03368986.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 144 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 5/103 (4%) Query: 227 IMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I RDE+LHL ++N ++ +++P + +E +Q+ + +A E +A Sbjct: 3 IARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRD 62 Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 G +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 63 GSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 105 >gi|325066257|ref|ZP_08124930.1| Ribonucleoside-diphosphate reductase [Actinomyces oris K20] Length = 324 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/303 (21%), Positives = 121/303 (39%), Gaps = 28/303 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + L + E+ M R +++ +++ Sbjct: 32 TGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAR 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P L AF E+VH+ ++ I ++L + E F E ++ KA L Y Sbjct: 89 TPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENANLQRKARIILDY-- 146 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 + D E + V + E FY+GF + K+ A+ + I Sbjct: 147 ----------YRGDDPEKRK---VASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLI 193 Query: 228 MRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + I Q+ + E+ E + + +L E E Y + + +G Sbjct: 194 IRDEAVH-GYYIGYKYQLAVRESSPERQAELKDYTFELLMELYDNEEQYTEDLYDE--LG 250 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343 L ++++++ AN+ +G E LF NP S + + +FF + Y Sbjct: 251 L-TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILASLSPNADENHDFFSGSGSSY 309 Query: 344 QQG 346 G Sbjct: 310 VMG 312 >gi|206577235|ref|YP_002236984.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] gi|206566293|gb|ACI08069.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] Length = 320 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/272 (20%), Positives = 109/272 (40%), Gaps = 37/272 (13%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W++ + + + L + ++ V ++A Sbjct: 29 SNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMA---DSLT 85 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 P L +F EAVH+ ++ I ++L + + A W+ Sbjct: 86 PHEEAVLSNISFMEAVHARSYSSIFSTLCHSK-----------EVDAAFAWSESCEPLQR 134 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 G AD+ + + V E FY+GF + K+ A+ + I+RD Sbjct: 135 KAQLMLGYYQADEPLKKK--IASVFLESFLFYSGFWLPMHFSSRGKLTNTADLIRLIIRD 192 Query: 231 ESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 E++H + G+++++ K E E + + +L + E+AY+ E + Sbjct: 193 EAVHGYYIGYKYQKGLEIVSPGKRE-------ELKNFALDLLMDLYDNELAYSRELYGES 245 Query: 284 --FVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 F ++A C + AN+ +G E LF Sbjct: 246 GWFDDVSAFLC-----YNANKALMNLGYEALF 272 >gi|13095637|ref|NP_076552.1| ribonucleotide reductase small subunit [Bovine herpesvirus 4] gi|12802587|gb|AAK07979.1|AF318573_59 ribonucleotide reductase small subunit [Bovine herpesvirus 4] Length = 305 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/307 (21%), Positives = 119/307 (38%), Gaps = 40/307 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W P++V + D+ KS N +R K F +ESLV NI I + + Sbjct: 26 NRWFPSQVSLHGDVNHLKSLNV---QDREFYKFLFTFLGMAESLVNFNIE-DIIKQFESH 81 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL-GLDEGELFNMYREV---PSITAKANWALQYTQ 167 + Y Q E +H+ ++ I+ D E++ + + ++ K +W + Sbjct: 82 DMLHYYTEQMAMENIHARMYENILNMFFNNDPAEMYRYTQMIINDRALIRKLDWLHSRIK 141 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 ++S+ + + + +F +V EG++F + F I L G+ YI Sbjct: 142 SVSNKA-------------EKVLLFLLV-EGIFFVSSFYSIGLLRVRGMFNGVCLANDYI 187 Query: 228 MRDESLHLNFGIDVINQI--KIENPH-LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 RDE LH + N + + PH LW +++ + HE L++ G Sbjct: 188 SRDELLHTRAAALLYNTMVSGADKPHMLWVHNLFKEAVEVEHEFILVK--------SSGV 239 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGL---EPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 +N +++ A+R I L + P + V K NFFE + Sbjct: 240 SAVNVDDIRSFLEATADRILKSINLPPIYGTPPPPKCPLVYTGCV----KNVNFFERDNS 295 Query: 342 EYQQGAE 348 +Y + Sbjct: 296 DYTSSIK 302 >gi|83722609|ref|YP_443887.1| ribonucleotide reductase subunit 2 [Papiine herpesvirus 2] gi|75905762|gb|ABA29294.1| UL40 [Papiine herpesvirus 2] Length = 339 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 71/302 (23%), Positives = 121/302 (40%), Gaps = 35/302 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ +E+ D + GLTD+E + F ++++ LV N+ + Sbjct: 55 NRWLESELVFAGD---EEDVAGLTDEELNFYRFLFTFLSAADDLVTENLG-GLSGLFPQK 110 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--REV--PSITAKANWALQYTQ 167 + Y + Q E VHS + I L ++ + Y R + P+I K +W Q Sbjct: 111 DILHYYVEQEAIEVVHSRVYSIIQLVLFRNDEQARREYVARTIHHPAIRVKVDWLEARVQ 170 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 S + + F+ ++ EG++F FA I + N + + I Sbjct: 171 ACES--------------VPEKFILMILIEGIFFAASFAAIAYMRTNNLLRVTCQSNDLI 216 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K ++ + EA +EI + P L Sbjct: 217 SRDEAVHTTASCYIYNNYLAGH----RKPEPERVYRLFREAVEIEIGFIRSQAPADSRIL 272 Query: 288 N---APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL---KKEKNFFETRVT 341 + + E Y++F A+R I ++PLF P P S ++L +K NFFE R T Sbjct: 273 DAAALAAIENYVRFSADRLLALIEMKPLFG---APAPAPSFPLNLMSTEKHTNFFERRST 329 Query: 342 EY 343 Y Sbjct: 330 AY 331 >gi|262203177|ref|YP_003274385.1| ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM 43247] gi|262086524|gb|ACY22492.1| Ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM 43247] Length = 334 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/303 (20%), Positives = 121/303 (39%), Gaps = 28/303 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W N LT+ E+ + R +++ +++ + Sbjct: 42 TGNFWLPEKVPVSNDIPSW---NTLTEYEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAT 98 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P L AF E+VH+ ++ I ++L + E F E + KA + Y + Sbjct: 99 TPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSEENDQLQRKAQIVMDYYR 158 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 159 -------------GDDPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 203 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + G ++++ +E + + +L E E Y + VG Sbjct: 204 IRDEAVHGYYIGYKYQRGLEVQTAER-RQELKDYTFELLFELYDNESDYTEALYDE--VG 260 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343 L ++++++ AN+ +G E +F E NP + + + +FF + Y Sbjct: 261 LTE-DVKKFLRYNANKALMNLGYEAMFPKDETDVNPAILSALSPNADENHDFFSGSGSSY 319 Query: 344 QQG 346 G Sbjct: 320 VIG 322 >gi|83642896|ref|YP_438184.1| ORF60 [Ovine herpesvirus 2] gi|61971010|gb|AAX58095.1| ORF60 [Ovine herpesvirus 2] gi|78127895|gb|ABB22279.1| ribonucleotide-reductase small subunit-like protein [Ovine herpesvirus 2] Length = 305 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 73/321 (22%), Positives = 118/321 (36%), Gaps = 47/321 (14%) Query: 44 EKYLSACN-------------NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +KYL C+ N W P ++ + D+ K L++ E K F Sbjct: 5 KKYLYVCDHRGFFDLTQETFQNRWFPAQINLTADV---KCLGSLSEKEVAFYKYLFTFLG 61 Query: 91 SSESLVANNI---VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 +E+LV NI V H + + Y Q E VH + I+ L Sbjct: 62 MAETLVNFNIDELVAGFEIH----DVKHYYCEQMAMECVHGKVYFNILNML--------- 108 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + A A L+ + G + + + +FY++ EG++F + F Sbjct: 109 FKNNIAETRAFAESVLEDEPLRKKLQWLEGKIKTAESAAEKVLIFYLI-EGIFFISSFYC 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI---KIENPHLWTKEFQQKSRTM 264 I L M G+ YI RDE LH + N + + + W + + Sbjct: 168 IGLLRVKGVMPGVCMANDYISRDELLHTRAAALLYNTVIPQEGKPSEAWIID-------L 220 Query: 265 LHEATLLEIAYAH-ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 EA +E + ++ GFV N ++++ A+R + IGL FK +E P Sbjct: 221 FKEAVSIEDEFIRAKSGEVGFV--NVADIRRFLEATADRLLNSIGLPVHFK-SEPPKSCP 277 Query: 324 SEVIDLKKEKNFFETRVTEYQ 344 K +FFE TEY Sbjct: 278 LTYTGCIKNVSFFERESTEYS 298 >gi|145296522|ref|YP_001139343.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium glutamicum R] gi|140846442|dbj|BAF55441.1| hypothetical protein [Corynebacterium glutamicum R] Length = 334 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/272 (19%), Positives = 113/272 (41%), Gaps = 27/272 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + N + + + L + + V +++ Sbjct: 42 TGNFWLPEKVPVSNDIKSWGTLNDVEKAATMRVFTGLTLLDTIQGTVG---AISLLPDAD 98 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166 + L AF E+VH+ ++ I +L E+ + +R E ++ KA L Y Sbjct: 99 SLHEEAVLTNIAFMESVHAKSYSNIFMTLA-STAEINDAFRWSEENENLQRKAKIILSYY 157 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + D + + V+ E FY+GF + +K+ A+ + Sbjct: 158 E-------------GDDPLKRK--IASVILESFLFYSGFYLPMYWSSHSKLTNTADVIRL 202 Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 I+RDE++H + G + E P +E ++ + +L++ E Y+ + + Sbjct: 203 IIRDEAVHGYYIGYKYQKAVAKETPER-QEELKEYTFDLLYDLYDNETQYSEDLYDD--L 259 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 G ++++++ AN+ + +G E LF E Sbjct: 260 GW-TEDVKRFLRYNANKALNNLGYEGLFPADE 290 >gi|268590425|ref|ZP_06124646.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rettgeri DSM 1131] gi|291314339|gb|EFE54792.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rettgeri DSM 1131] Length = 323 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 61/272 (22%), Positives = 110/272 (40%), Gaps = 31/272 (11%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P +VP+ +D+ W N LT E+ + R +++ + Sbjct: 32 SNFWLPEKVPLSNDIPSW---NTLTAAEKQLTIRVFTGLTLLDTIQNTVGAPCLMPDAQT 88 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQT 168 P L +F EAVH+ ++ I ++L +D + + E ++ KA L Y Sbjct: 89 PHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDDAYRWSEENNALQNKAKIILSYY-- 146 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 D L+ + + E FY+GF + K+ A+ + I+ Sbjct: 147 ------------CDSHPLKKK-IASIFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLII 193 Query: 229 RDESLHLNFGIDVINQIKI----ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 RDE++H + I Q + EN KE + S ++L + E+ Y E Sbjct: 194 RDEAIH-GYYIGYKFQKSLAQYDENTQ---KEIKDFSFSLLFDLYENEVKYTQELYDT-- 247 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 VG + ++++ + AN+ +G E LF T Sbjct: 248 VGW-SEDVKKFLHYNANKALMNLGYEALFPDT 278 >gi|298256099|gb|ADI71328.1| ribonucleoside diphosphate reductase beta subunit-like protein [Epizootic haematopoietic necrosis virus] Length = 202 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 15/186 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 32 PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 91 VGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 T K ++ ++ + P A V+ EG+ + F +L+ R Sbjct: 150 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRRG 196 Query: 216 KMVGIA 221 KM G+ Sbjct: 197 KMKGMG 202 >gi|118586508|ref|ZP_01543952.1| ribonucleoside-diphosphate reductase 2, beta subunit [Oenococcus oeni ATCC BAA-1163] gi|118433072|gb|EAV39794.1| ribonucleoside-diphosphate reductase 2, beta subunit [Oenococcus oeni ATCC BAA-1163] Length = 337 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/278 (23%), Positives = 114/278 (41%), Gaps = 34/278 (12%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +D+ W+S GL E + G ++L + + + Sbjct: 27 TWEK---LTEQFWLDTRIPISNDMKDWRSL-GLV--EHKLYDHVFGGLTMLDTLQSQDGM 80 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKA 159 ++ P R L F E+VH+ ++ I +L + E+F+ A Sbjct: 81 ASLLDAAVTPHERAVLNNIKFMESVHAKSYSSIFETLDTPAEIDEIFDW--------ASK 132 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + D D + VF E FY+GF L NKM Sbjct: 133 NEQLQY----KANKINSVYHDPDPLKRKIASVF---LETFLFYSGFYTPLYFVGHNKMAN 185 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW---TKEFQQKSRTMLHEATLLEIAYA 276 +AE + I+RDES+H G + + ++ L KE + +L++ E Y Sbjct: 186 VAEIIKLIIRDESVH---GTYIGYKFQLAYKELTEQEQKELNSWAYDLLYDLYDNEEKYT 242 Query: 277 HETMPKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313 H+ + ++ ++++ N+ +GLEP+F Sbjct: 243 HQLYDE----IDWFDDVMIFLRYNGNKALMNLGLEPMF 276 >gi|9628063|ref|NP_042657.1| ribonucleotide reductase, small subunit [Equid herpesvirus 2] gi|82013696|sp|Q66662|RIR2_EHV2 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|695233|gb|AAC13848.1| ribonucleotide reductase, small subunit [Equid herpesvirus 2] Length = 305 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/302 (21%), Positives = 116/302 (38%), Gaps = 30/302 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W P+++ + D+A +S L + K F A +E LV NI A+ + Sbjct: 26 NRWFPSQISLTSDVACLQS---LNPRDLEFYKFLFSFLAMAEKLVNFNI-QALVADFHSH 81 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNMYREV---PSITAKANWALQYTQ 167 + Y Q E +H + I+ + GE+ RE+ ++ AK +W Sbjct: 82 DLEHYYTEQEAMENIHGKVYANILNMFFKNNVGEMQKYAREIVGDEALAAKLHW------ 135 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 G + + + VF ++ EG++F + F I +L M G+ YI Sbjct: 136 -------LHGRVSEAKTRAEKVLVFLLI-EGIFFISSFYSIATLRVRGLMNGVCMANDYI 187 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE +H + N + + K + + EA +E + +G + Sbjct: 188 SRDEWVHTRAAALLFNTLVPDE----EKPSPEWIGALFREAVEVEYNFIL-AKGRGVSHV 242 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV-IDLKKEKNFFETRVTEYQQG 346 N ++++ A+R I + P+ Y P P V K NFFE ++Y Sbjct: 243 NVADINRFLEATADRILKSINVGPV--YGTQPPPNCPLVYTGCLKNVNFFERESSDYTTA 300 Query: 347 AE 348 + Sbjct: 301 VD 302 >gi|319406095|emb|CBI79725.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp. AR 15-3] Length = 324 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/265 (21%), Positives = 110/265 (41%), Gaps = 25/265 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W S LT++ER + R +++ +++ Sbjct: 34 NFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAISLIADAVTE 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L ++ + F E + KA L++ + Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENTYLQKKARLILEHYE-- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 A++ + + + E FY+GF + K+ A+ + I+R Sbjct: 149 -----------ANEPLKKK--IASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 195 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q+ H K E + + +L + +E Y + +GL Sbjct: 196 DEAVH-GYYIGYKFQLGFAKLHEAKKQEIKDFAFNILFDLYNIECKYTEDLYDA--IGLT 252 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 + ++ + AN+ +G E LF Sbjct: 253 -EDVKVFLHYNANKALMNLGFEALF 276 >gi|297724673|ref|NP_001174700.1| Os06g0257450 [Oryza sativa Japonica Group] gi|255676900|dbj|BAH93428.1| Os06g0257450 [Oryza sativa Japonica Group] Length = 162 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 +N QY++F+A+R +G + ++ NPF WM E+I L+ + NFFE RV +YQ+ Sbjct: 83 MNGDLMSQYIEFVADRLLMALGCKKMYNVA-NPFDWM-ELISLQGKTNFFEKRVGDYQKA 140 Query: 347 A 347 + Sbjct: 141 S 141 >gi|161502142|ref|YP_001569254.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863489|gb|ABX20112.1| hypothetical protein SARI_00165 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 319 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 36/195 (18%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101 +N W+P +VP+ +D+ W++ N +++L I+ G A + SL+A+ I Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLNAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT 84 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKA 159 P L +F EAVH+ ++ I ++L D + E P + KA Sbjct: 85 ---------PHEEAVLSNISFMEAVHARSYSSIFSTLCQSKDVDAAYAWSEENPQLQRKA 135 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 + T +S + V E FY+GF + K+ Sbjct: 136 Q--IMMTHYVSDEPLKKK-------------IASVFLESFLFYSGFWLPMYFSSRGKLTN 180 Query: 220 IAEQYQYIMRDESLH 234 A+ + I+RDE++H Sbjct: 181 TADLIRLIIRDEAVH 195 >gi|16761590|ref|NP_457207.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143070|ref|NP_806412.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052490|ref|ZP_03345368.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424576|ref|ZP_03357365.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584527|ref|ZP_03366353.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650063|ref|ZP_03380116.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824437|ref|ZP_06544026.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25330821|pir||AH0841 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503891|emb|CAD05919.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhi] gi|29138703|gb|AAO70272.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 319 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/273 (20%), Positives = 112/273 (41%), Gaps = 39/273 (14%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 P L +F EAVH+ ++ I ++L + + A W+ Sbjct: 85 --------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAWS 125 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + +D+ + + V E FY+GF + K+ A+ Sbjct: 126 EENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTAD 183 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I+RDE++H + I +QI ++ + +E + + +L E EI Y Sbjct: 184 LIRLIIRDEAVH-GYYIGYKHQIALQKLSAIEREELKLFALDLLMELYDNEICYTEALYA 242 Query: 282 K-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + G+V + ++ + AN+ +G E LF Sbjct: 243 ETGWVN----DVKAFLCYNANKALMNLGYEALF 271 >gi|329945141|ref|ZP_08293009.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328529340|gb|EGF56255.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 324 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 65/303 (21%), Positives = 121/303 (39%), Gaps = 28/303 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + L + E+ M R +++ +++ Sbjct: 32 TGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDAR 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P L AF E+VH+ ++ I ++L + E F E ++ KA L Y Sbjct: 89 TPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWSEENENLQRKARIILDY-- 146 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 + D E + V + E FY+GF + K+ A+ + I Sbjct: 147 ----------YRGDDPEKRK---VASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLI 193 Query: 228 MRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + I Q+ + E+ E + + +L E E Y + + +G Sbjct: 194 IRDEAVH-GYYIGYKYQLAVRESSPERQAELKDYTFELLMELYDNEEQYTEDLYDE--LG 250 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343 L ++++++ AN+ +G E LF NP S + + +FF + Y Sbjct: 251 L-TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILASLSPNADENHDFFSGSGSSY 309 Query: 344 QQG 346 G Sbjct: 310 VMG 312 >gi|99080359|ref|YP_612513.1| ribonucleotide-diphosphate reductase subunit beta [Ruegeria sp. TM1040] gi|99036639|gb|ABF63251.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Ruegeria sp. TM1040] Length = 338 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/263 (20%), Positives = 105/263 (39%), Gaps = 20/263 (7%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W LT DE+ + R +++ + + P Sbjct: 47 NFWLPEKVPLSNDIQSWSQ---LTPDEQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITP 103 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 L +F EAVH+ ++ + ++L + + W+ + + Sbjct: 104 HEEAVLSNISFMEAVHARSYSSVFSTLC-----------QTTEVDEAFRWSAENEHLQAK 152 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 G DA L+ + V E FY+GF + ++ A+ + I+RDE Sbjct: 153 SRLILGEYDATASPLRKK-IASVFLESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRDE 211 Query: 232 SLHLNFGIDVINQIKIENP-HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 ++H + I Q +E KE + + +L + +E Y E + G +GL Sbjct: 212 AIH-GYYIGYKFQRGLERASEAERKELKDFAFGLLFDLYDIEARYT-EQLYDG-LGLTE- 267 Query: 291 SCEQYMQFIANRRCHQIGLEPLF 313 + ++ + AN+ +G E LF Sbjct: 268 DVKNFLHYNANKALQNLGFEALF 290 >gi|209551073|ref|YP_002282990.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536829|gb|ACI56764.1| Ribonucleoside-diphosphate reductase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 324 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/266 (23%), Positives = 113/266 (42%), Gaps = 27/266 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT E+ + R +++ + + P Sbjct: 34 NFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGAVGLMEDAVTP 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 L +F EAVH+ ++ I ++L ++ + YR ++ N LQ TL Sbjct: 91 HEEAVLSNVSFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSTLII 144 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + G + V V E FY+GF + K+ A+ + I+RDE Sbjct: 145 EQYRCGDPLKKK-------VASVFLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDE 197 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFVGL 287 ++H + I Q +E ++E +Q+ + + LLE+ A E + G VGL Sbjct: 198 AVH-GYYIGYKFQRGLER---LSEERKQEIKDFAFD-LLLELYDNEARYTEALYDG-VGL 251 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313 ++++ + AN+ +G E LF Sbjct: 252 T-EDVKKFLHYNANKALMNLGYEALF 276 >gi|237785987|ref|YP_002906692.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium kroppenstedtii DSM 44385] gi|237758899|gb|ACR18149.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium kroppenstedtii DSM 44385] Length = 336 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/322 (21%), Positives = 120/322 (37%), Gaps = 35/322 (10%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M ++P++ G N D R + A D N + K W++ N W+P +VP Sbjct: 1 MKKTNAITPVRWGTNGNNHD--RPI-AAIDWNTIPDDKDQEVWDR---LTGNFWLPEKVP 54 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W + N L + + L + + V +++ P Sbjct: 55 LSNDIKSWGTLNELEQRTTMRVFTGLTMLDTIQGTVG---AVSLIPDALTPHEEAVYTNI 111 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AF E+VH+ ++ I +L P I W+ + + Sbjct: 112 AFMESVHARSYSSIFMTLS-----------STPEINDAFRWSEENENLQDKARIVLDYYE 160 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 D F + V + E FY+GF + K+ A+ + I+RDE++H + I Sbjct: 161 GDNPFKRK--VASTLLESFLFYSGFYLPMYWSSHGKLTNTADVIRLIIRDEAVH-GYYIG 217 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEAT--LLEIAYAHET--MPKGFVGLN-APSCEQY 295 Q E Q R L E T LL Y +ET + L +++ Sbjct: 218 YKYQRGQE-------ALTQSERDGLKEYTFDLLYELYDNETQYTEDLYDELGWTEDVKRF 270 Query: 296 MQFIANRRCHQIGLEPLFKYTE 317 +++ AN+ + +G E LF E Sbjct: 271 LRYNANKALNNLGYEALFPADE 292 >gi|227329868|ref|ZP_03833892.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 320 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/268 (20%), Positives = 110/268 (41%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W + N + + L + ++ + ++ Sbjct: 28 TSNFWLPEKVPLSNDIPSWGTLNARERQLTIRVFTGLTLLDTIQNTLGAPTLMP---DAV 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L L E+ + YR W+ + T Sbjct: 85 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYR----------WSEENTALQ 133 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 +D ++ V V E FY+GF + K+ A+ + I+R Sbjct: 134 KKSDIILSHYRSDDPLMKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 191 Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM--PKGFVG 286 DE++H + G + +P QQ+ + ++ LL+ Y +E + + + G Sbjct: 192 DEAVHGYYIGYKFQRGLAKADPAR-----QQQVKNFAYD--LLQDLYDNEVLYTQELYDG 244 Query: 287 LN-APSCEQYMQFIANRRCHQIGLEPLF 313 + ++++ + AN+ +G E LF Sbjct: 245 VGWTEDVKKFLHYNANKALMNLGYEALF 272 >gi|222150734|ref|YP_002559887.1| ribonucleoside-diphosphate reductase minor subunit [Macrococcus caseolyticus JCSC5402] gi|222119856|dbj|BAH17191.1| ribonucleoside-diphosphate reductase minor subunit [Macrococcus caseolyticus JCSC5402] Length = 322 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/270 (25%), Positives = 106/270 (39%), Gaps = 28/270 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ +E + D+A WK LTDDE+ L ++ A++ + I H + Sbjct: 25 WVESEFKVSKDIASWKE---LTDDEKFTFNHALAGLTGLDTHQADDGMPLIGLHTQDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMYREVPSITAKANWALQYTQTL 169 + E +H+ ++ +I T+L L E L N P + K+ + L Sbjct: 82 KAVYSFMGMMEQIHAKSYSHIFTTL-LPSAETNDLLDNWVVNEPHLKFKSEKIVSRYHKL 140 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 T DQ + V V E FY+GF L L +M E + I+ Sbjct: 141 WGKEATI----YDQYMAR---VASVFLETFLFYSGFYYPLYLAGQGRMTTSGEIIRKILL 193 Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE----TMPKGF 284 DES+H F G+D ++ E +K R LL+ YA+E M Sbjct: 194 DESIHGVFTGLDA-QSLRNEMTE------DEKIRADKEMYDLLKELYANEESYTKMLYDR 246 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 VGL Y+Q+ N+ +G EP F+ Sbjct: 247 VGL-TEDVLNYVQYNGNKALANLGFEPYFE 275 >gi|298256107|gb|ADI71332.1| ribonucleoside diphosphate reductase beta subunit-like protein [Rana esculenta virus] Length = 202 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 15/186 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 32 PFRYAWAEAIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 91 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 T K ++ ++ + P A V+ EG+ + F +L+ R+ Sbjct: 150 TDKLDF-MREMDCSTLPGLARSLLRA------------VLNEGVSLFAAFVMLLTFQRSG 196 Query: 216 KMVGIA 221 KM G+ Sbjct: 197 KMKGMG 202 >gi|19553723|ref|NP_601725.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium glutamicum ATCC 13032] gi|62391364|ref|YP_226766.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium glutamicum ATCC 13032] gi|15430572|dbj|BAB64405.1| ribonucleoside diphosphate reductase [Corynebacterium glutamicum] gi|21325297|dbj|BAB99918.1| Ribonucleotide reductase beta subunit [Corynebacterium glutamicum ATCC 13032] gi|41326705|emb|CAF21187.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 BETA CHAIN [Corynebacterium glutamicum ATCC 13032] Length = 334 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/273 (19%), Positives = 113/273 (41%), Gaps = 29/273 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + N + + + L + + V +++ Sbjct: 42 TGNFWLPEKVPVSNDIKSWGTLNEVEKAATMRVFTGLTLLDTIQGTVG---AISLLPDAD 98 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166 + L AF E+VH+ ++ I +L E+ + +R E ++ KA L Y Sbjct: 99 SLHEEAVLTNIAFMESVHAKSYSNIFMTLA-STAEINDAFRWSEENENLQRKAKIILSYY 157 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + D + + V+ E FY+GF + +K+ A+ + Sbjct: 158 E-------------GDDPLKRK--IASVILESFLFYSGFYLPMYWSSHSKLTNTADVIRL 202 Query: 227 IMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GF 284 I+RDE++H + G + E P +E ++ + +L++ E Y+ + G+ Sbjct: 203 IIRDEAVHGYYIGYKYQKAVAKETPER-QEELKEYTFDLLYDLYDNETQYSEDLYDDLGW 261 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++++++ AN+ + +G E LF E Sbjct: 262 T----EDVKRFLRYNANKALNNLGYEGLFPADE 290 >gi|213419183|ref|ZP_03352249.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 305 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/273 (20%), Positives = 112/273 (41%), Gaps = 39/273 (14%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSA--AEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAI-- 83 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 P L +F EAVH+ ++ I ++L + + A W+ Sbjct: 84 -------TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAWS 125 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + +D+ + + V E FY+GF + K+ A+ Sbjct: 126 EENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTAD 183 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I+RDE++H + I +QI ++ + +E + + +L E EI Y Sbjct: 184 LIRLIIRDEAVH-GYYIGYKHQIALQKLSAIEREELKLFALDLLMELYDNEICYTEALYA 242 Query: 282 K-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + G+V + ++ + AN+ +G E LF Sbjct: 243 ETGWVN----DVKAFLCYNANKALMNLGYEALF 271 >gi|168702485|ref|ZP_02734762.1| ribonucleotide-diphosphate reductase small chain [Gemmata obscuriglobus UQM 2246] Length = 70 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 2/61 (3%) Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 GL+ Y ++ A+RR +G+ P+F T+NPF +M ++ D+++ NFFE RV+ YQ Sbjct: 3 GLSCRDLRSYPEYAADRRLESLGIAPVFG-TKNPFGFM-DLQDVQELTNFFERRVSAYQL 60 Query: 346 G 346 G Sbjct: 61 G 61 >gi|319899230|ref|YP_004159323.1| ribonucleoside-diphosphate reductase beta chain [Bartonella clarridgeiae 73] gi|319403194|emb|CBI76753.1| ribonucleoside-diphosphate reductase beta chain [Bartonella clarridgeiae 73] Length = 324 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/265 (21%), Positives = 109/265 (41%), Gaps = 25/265 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W S LT++ER + R +++ +++ Sbjct: 34 NFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTVQNTVGAISLMADAVTE 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L ++ + F E + KA L++ + Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENTYLQKKARLILEHYE-- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 A++ + + + E FY+GF + K+ A+ + I+R Sbjct: 149 -----------ANEPLKKK--IASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 195 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q+ N +E + + ML + +E Y +GL Sbjct: 196 DEAVH-GYYIGYKFQLGFANLDKAKRQEIKDFAFNMLFDLYNIECKYTENLYDS--IGL- 251 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 + ++ + AN+ +G E LF Sbjct: 252 TEDVKVFLHYNANKALMNLGFEALF 276 >gi|224283650|ref|ZP_03646972.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium bifidum NCIMB 41171] gi|310288088|ref|YP_003939347.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium bifidum S17] gi|313140805|ref|ZP_07802998.1| ribonucleoside-diphosphate reductase subunit beta [Bifidobacterium bifidum NCIMB 41171] gi|309252025|gb|ADO53773.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium bifidum S17] gi|313133315|gb|EFR50932.1| ribonucleoside-diphosphate reductase subunit beta [Bifidobacterium bifidum NCIMB 41171] Length = 330 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/271 (18%), Positives = 105/271 (38%), Gaps = 33/271 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ ++DDE + +++ +++ Sbjct: 38 TGNFWLPEKVPVSNDIPSWQK---MSDDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P AF E+VH+ ++ I ++L I A +W+ + Sbjct: 95 TPHEEAVYTNIAFMESVHAKSYSSIFSTLC-----------STKEIDAAFDWSERNEFLQ 143 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + V + E FY+GF + K+ A+ + I+R Sbjct: 144 KKAEIVLDYYEGDSPLKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIR 201 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H + G++ ++ K E E ++ + +L+E E+ Y + Sbjct: 202 DEAVHGYYIGYKYQRGLERVSDAKRE-------EMREYTYNLLNELYDNEVEYTESLYER 254 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VGL E+++++ N+ +G LF Sbjct: 255 --VGL-TDDVEKFLRYNGNKALMNLGYPALF 282 >gi|116490256|ref|YP_809800.1| ribonucleotide-diphosphate reductase subunit beta [Oenococcus oeni PSU-1] gi|290889638|ref|ZP_06552728.1| hypothetical protein AWRIB429_0118 [Oenococcus oeni AWRIB429] gi|116090981|gb|ABJ56135.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Oenococcus oeni PSU-1] gi|290480836|gb|EFD89470.1| hypothetical protein AWRIB429_0118 [Oenococcus oeni AWRIB429] Length = 337 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 23/195 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +D+ W+S L E + G ++L + + + Sbjct: 27 TWEK---LTEQFWLDTRIPISNDMKDWRS---LGPVEHKLYDHVFGGLTMLDTLQSQDGM 80 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKA 159 ++ P R L F E+VH+ ++ I +L + E+F+ A Sbjct: 81 ASLLDAAVTPHERAVLNNIKFMESVHAKSYSSIFETLDTPAEIDEIFDW--------ASK 132 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + D D + VF E FY+GF L NKM Sbjct: 133 NEQLQY----KANKINSVYHDPDPLKRKIASVF---LETFLFYSGFYTPLYFVGHNKMAN 185 Query: 220 IAEQYQYIMRDESLH 234 +AE + I+RDES+H Sbjct: 186 VAEIIKLIIRDESVH 200 >gi|227112968|ref|ZP_03826624.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 320 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/272 (19%), Positives = 108/272 (39%), Gaps = 35/272 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W + N + + L + ++ + ++ Sbjct: 28 TSNFWLPEKVPLSNDIPSWSTLNARERQLTIRVFTGLTLLDTIQNTLGAPTLMP---DAV 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L L E+ + YR W+ + T Sbjct: 85 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-TSEVDDAYR----------WSEENTALQ 133 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 +D ++ V V E FY+GF + K+ A+ + I+R Sbjct: 134 KKSDIILSHYRSDDPLMKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 191 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H + G+ ++ + H K F + +L + E+ Y E Sbjct: 192 DEAVHGYYIGYKFQRGLAKVDSAR----HQQVKNF---AYDLLQDLYDNEVLYTQEL--- 241 Query: 283 GFVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313 + G+ ++++ + AN+ +G E LF Sbjct: 242 -YDGVGWTEDVKKFLHYNANKALMNLGYEALF 272 >gi|238784826|ref|ZP_04628827.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia bercovieri ATCC 43970] gi|238714242|gb|EEQ06253.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia bercovieri ATCC 43970] Length = 323 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/271 (19%), Positives = 113/271 (41%), Gaps = 37/271 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT +E+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAMTP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 +F EAVH+ ++ I ++L + D + + E + KA+ LQ+ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQHYHN- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D ++ + +F+ E FY+GF + K+ A+ + I+R Sbjct: 149 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 194 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H + G++ ++ + +E + + +L + E+ Y + K Sbjct: 195 DEAVHGYYIGYKFQKGLERVDNSR-------RQEIKNFAFDLLQDLYDNEVRYTEDLYDK 247 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG ++++ + AN+ +G E LF Sbjct: 248 --VGWTE-DVKKFLHYNANKALMNLGYEALF 275 >gi|237729635|ref|ZP_04560116.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp. 30_2] gi|226908241|gb|EEH94159.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp. 30_2] Length = 319 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 61/287 (21%), Positives = 117/287 (40%), Gaps = 45/287 (15%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101 +N W+P +VP+ +D+ W++ N +++L I+ G A + +L+A+++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLNAA--EQQLTIRVFTGLTLLDTIQNVAGAPALMADSLT 84 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 P L +F EAVH+ ++ I ++L + + A W Sbjct: 85 ---------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAW 124 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + T +D+ + + V E FY+GF + K+ A Sbjct: 125 SEENTPLQRKAQIVLTHYASDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTA 182 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + + I+RDE++H + I Q +E+ +E + + +L E E Y E Sbjct: 183 DLIRLIIRDEAVH-GYYIGYKYQKGLEHISESAREELKNFAFDLLMELYDNEARYTEELY 241 Query: 281 PK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 + G+V + ++ + AN+ +G E LF P M+EV Sbjct: 242 AETGWVD----DVKAFLCYNANKALMNLGYEALFP------PEMAEV 278 >gi|326336655|ref|ZP_08202823.1| ribonucleoside-diphosphate reductase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691125|gb|EGD33096.1| ribonucleoside-diphosphate reductase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 319 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 70/297 (23%), Positives = 113/297 (38%), Gaps = 23/297 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ +EV D+ +KS L + E +KR L A E V +Y PE Sbjct: 30 WVHSEVEFTADIQDFKSNLSLIEKE--AVKRALLGIAQVEVAV-KTFWGDLYDIFPKPEF 86 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 A E HS + ++ LG + F EVP + +Y Sbjct: 87 NGLGATFAECEFRHSEAYSRLLEVLGYNNE--FETLLEVPIFKERNGVLKEY-------- 136 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDES 232 ++A ++ + F ++ E ++ FA ILS R M +A + DE Sbjct: 137 LAKNRENA----MERILFFTLIIENASLFSQFATILSFTRFKGYMKNVANIIAWTSIDEQ 192 Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPS 291 +H N GI ++ I ENP TK ++++ + E LLE +G + Sbjct: 193 VHANAGIYILKTIFEENPEFRTKA-KEEATQFIREYILLEDKMLDWIFEEGELDFFTKKD 251 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 YM++ + Q+ L F T P W E + + + +FF R T Y + Sbjct: 252 LANYMRYRLDDALTQLDLGKPFGITAEEAKPMLWFEEEVFVNELDDFFAKRPTAYTK 308 >gi|238794433|ref|ZP_04638043.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia intermedia ATCC 29909] gi|238726228|gb|EEQ17772.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia intermedia ATCC 29909] Length = 330 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/275 (19%), Positives = 115/275 (41%), Gaps = 37/275 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT +E+ + R +++ A+ + P Sbjct: 40 NFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 96 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 +F EAVH+ ++ I ++L + D + + E + KA+ LQ+ Sbjct: 97 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQHYHN- 155 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D ++ + +F+ E FY+GF + K+ A+ + I+R Sbjct: 156 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 201 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H + G++ ++ + +E + + +L + E+ Y + K Sbjct: 202 DEAVHGYYIGYKFQQGLEKVDNAR-------RQEIKNFAFDLLQDLYDNEVRYTEDLYDK 254 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 VG ++++ + AN+ +G E LF ++ Sbjct: 255 --VGW-TEDVKKFLHYNANKALMNLGYEALFPASQ 286 >gi|238796650|ref|ZP_04640156.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia mollaretii ATCC 43969] gi|238719381|gb|EEQ11191.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia mollaretii ATCC 43969] Length = 323 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/266 (21%), Positives = 113/266 (42%), Gaps = 27/266 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT +E+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 +F EAVH+ ++ I ++L + D + + E + KA+ LQ+ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQHYHN- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D ++ + +F+ E FY+GF + K+ A+ + I+R Sbjct: 149 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 194 Query: 230 DESLHLNF-GIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 DE++H + G + K++N +E + + +L + E+ Y + K VG Sbjct: 195 DEAVHGYYIGYKFQKGLEKVDNNR--RQEIKNFAFDLLQDLYDNEVRYTEDLYDK--VGW 250 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313 ++++ + AN+ +G E LF Sbjct: 251 -TEDVKKFLHYNANKALMNLGYEALF 275 >gi|49475007|ref|YP_033048.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella henselae str. Houston-1] gi|49237812|emb|CAF27007.1| Ribonucleotide reductase beta-chain [Bartonella henselae str. Houston-1] Length = 324 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/271 (20%), Positives = 107/271 (39%), Gaps = 37/271 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W S LT++ER + R +++ +++ Sbjct: 34 NFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGLTLLDTIQNTVGAISLMADAITE 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L ++ + F E + KA L+ + Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENIHLQKKARLVLERYE-- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 G ++ L E FY+GF + K+ A+ + I+R Sbjct: 149 -------GNDPLKKKIASTL------LESFLFYSGFYLPMYWASRAKLTNTADLIRLIIR 195 Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H G +++ K KE + + +L + +E Y + Sbjct: 196 DEAVHGYYIGYKFQLGFAKLDETK-------KKEVKDFAFNLLFDLYNIECKYTEDLYDA 248 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +GL + ++ + AN+ +G E LF Sbjct: 249 --LGL-TEDVKIFLHYNANKALMNLGFEALF 276 >gi|152964774|ref|YP_001360558.1| ribonucleotide-diphosphate reductase subunit beta [Kineococcus radiotolerans SRS30216] gi|151359291|gb|ABS02294.1| Ribonucleoside-diphosphate reductase [Kineococcus radiotolerans SRS30216] Length = 323 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/273 (19%), Positives = 110/273 (40%), Gaps = 37/273 (13%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ L ER + R +++ +++ Sbjct: 31 TSNFWLPEKVPLSNDVQSWQN---LGAQERTLTLRVFTGLTLLDTIQGTVGAVSLIPDAL 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L E F + ++ KA+ L+Y Sbjct: 88 TPHEEAVYTNIAFMESVHARSYSSIFSTLATTREIDEAFAWSEDNEALQRKASIVLEYYH 147 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + ++ A+ + I Sbjct: 148 -------------GDDPLKRK--VASTLLESFLFYSGFFLPMHFSSRAQLTNTADLVRLI 192 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G+++++Q K + E + + +L+E E Y + Sbjct: 193 IRDEAVHGYYIGYKFQRGLELVDQAKRD-------EIKDYAFELLYELYDNECKYTADLY 245 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VGL + ++ + AN+ +G E +F Sbjct: 246 DG--VGL-TEDVKTFLHYNANKALMNLGYEGMF 275 >gi|238750475|ref|ZP_04611976.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei ATCC 43380] gi|238711406|gb|EEQ03623.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei ATCC 43380] Length = 323 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/307 (20%), Positives = 126/307 (41%), Gaps = 40/307 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + LT +E+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 +F EAVH+ ++ I ++L + D + + E + KA+ LQ+ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQHYHN- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 +D ++ + +F+ E FY+GF + K+ A+ + I+R Sbjct: 149 ---------EDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 194 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H + G++ K++N +E + + +L + E+ Y + K Sbjct: 195 DEAVHGYYIGYKFQKGLE-----KVDNNR--RQEIKNFAFDLLQDLYDNEVRYTEDLYDK 247 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETR 339 VG + ++ + AN+ +G E LF + NP + + + +FF Sbjct: 248 --VGW-TEDVKSFLHYNANKALMNLGYEALFPANQAEVNPAILAALSPNADENHDFFSGS 304 Query: 340 VTEYQQG 346 + Y G Sbjct: 305 GSSYVIG 311 >gi|296455120|ref|YP_003662264.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. longum JDM301] gi|296184552|gb|ADH01434.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. longum JDM301] Length = 330 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/301 (19%), Positives = 114/301 (37%), Gaps = 24/301 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ +T+DE + R +++ +++ Sbjct: 38 TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P AF E+VH+ ++ I ++L E I A +W+ Sbjct: 95 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQ 143 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + + V + E FY+GF + K+ A+ + I+R Sbjct: 144 KKAEIVLDYYEGDNPYKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIR 201 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q I + + Q + +L+E E+ Y + VGL Sbjct: 202 DEAVH-GYYIGYKYQKGIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGL- 257 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 E+++++ N+ +G LF NP S + + +FF + Y Sbjct: 258 TDDVEKFLRYNGNKALMNLGYPALFPAEICDVNPAILASLSPNADENHDFFSGSGSSYVM 317 Query: 346 G 346 G Sbjct: 318 G 318 >gi|296330954|ref|ZP_06873429.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674472|ref|YP_003866144.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus subtilis subsp. spizizenii str. W23] gi|296151959|gb|EFG92833.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412716|gb|ADM37835.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus subtilis subsp. spizizenii str. W23] Length = 329 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 66/298 (22%), Positives = 120/298 (40%), Gaps = 20/298 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + DL WK D + + L + + IV H+ + Sbjct: 30 WLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVA---EHVDGHQR 86 Query: 114 RQYL-LRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170 + L E AVH+ ++ I +L E E+F K N LQ + Sbjct: 87 KAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEW--------VKQNKYLQKKAQII 138 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + KD D+ L V V E FY+GF L K++ E I+RD Sbjct: 139 VGLYKAIQKD-DEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E++H + + +I + E + + +L+E E+ Y + + VGL + Sbjct: 198 EAIHGVYVGLLAQEIYNKQTEEKKAELRGFAIDLLNELYENELEYTEDLYDQ--VGL-SH 254 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGA 347 ++++++ AN+ +G +P F+ E+ P + ++ K K +FF + Y++ Sbjct: 255 DVKKFIRYNANKALMNLGFDPYFE-EEDINPIVLNGLNTKTKSHDFFSMKGNGYKKAT 311 >gi|190893561|ref|YP_001980103.1| ribonucleoside-diphosphate reductase, beta subunit [Rhizobium etli CIAT 652] gi|190698840|gb|ACE92925.1| ribonucleoside-diphosphate reductase protein, beta subunit [Rhizobium etli CIAT 652] Length = 324 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 37/273 (13%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ + + Sbjct: 32 TGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGAIRLMEDAM 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA-----LQ 164 P L +F EAVH+ ++ I ++L P I W+ LQ Sbjct: 89 TPHEEAVLSNVSFMEAVHARSYSSIFSTLC-----------STPDIDDAYRWSEENEFLQ 137 Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 L + G+ DA ++ + +F+ E FY+GF + K+ A+ Sbjct: 138 RKSALIMEQY--GSGDALKKKVASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADMI 190 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETM 280 + I+RDE++H + I Q +E ++E +Q+ + + LLE+ A E + Sbjct: 191 RLIIRDEAVH-GYYIGYKFQRGLER---LSEERRQQIKDFAFD-LLLELYDNEARYTEAL 245 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 G +GL ++++ + AN+ +G E LF Sbjct: 246 YDG-LGLT-EDVKKFLHYNANKALMNLGYEALF 276 >gi|213693323|ref|YP_002323909.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524784|gb|ACJ53531.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459505|dbj|BAJ70126.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 330 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/301 (19%), Positives = 114/301 (37%), Gaps = 24/301 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ +T+DE + R +++ +++ Sbjct: 38 TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P AF E+VH+ ++ I ++L E I A +W+ Sbjct: 95 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQ 143 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + + V + E FY+GF + K+ A+ + I+R Sbjct: 144 KKAEIVLDYYEGDNPYKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIR 201 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q I + + Q + +L+E E+ Y + VGL Sbjct: 202 DEAVH-GYYIGYKYQKGIAQLGDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGL- 257 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 E+++++ N+ +G LF NP S + + +FF + Y Sbjct: 258 TDDVEKFLRYNGNKALMNLGYPALFPAEICDVNPAILASLSPNADENHDFFSGSGSSYVM 317 Query: 346 G 346 G Sbjct: 318 G 318 >gi|297567587|ref|YP_003686558.1| hypothetical protein Mesil_3232 [Meiothermus silvanus DSM 9946] gi|297567764|ref|YP_003686735.1| hypothetical protein Mesil_3416 [Meiothermus silvanus DSM 9946] gi|296852036|gb|ADH65050.1| hypothetical protein Mesil_3232 [Meiothermus silvanus DSM 9946] gi|296852213|gb|ADH65227.1| hypothetical protein Mesil_3416 [Meiothermus silvanus DSM 9946] Length = 323 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 63/300 (21%), Positives = 113/300 (37%), Gaps = 24/300 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 W+ E+P+ DD W + L +ER ++ L ++L + + + + Sbjct: 22 VRQFWVDEEIPLADDKLTWTT---LAPEERETYEKVLVGLTLLDTLQGGVGMPLLVQTME 78 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + + + L E +H+ ++ I ++L +P I WA + Sbjct: 79 SAQVKAVLSFMGAMEQMHAKSYSLIFSTLS-----------PLPRIETLFRWAEGHPLLQ 127 Query: 170 SSPSFTTGTKD---ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + + G A L V+ E FY+GF L L ++V E Sbjct: 128 AKVARVEGRYRGVFAGDAGLYLALANSVLLESYLFYSGFYYPLLLAGEGRLVNSGEIISL 187 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET-MPKGFV 285 I+RDE++H + + Q+ P + R L + + LE AY E P G V Sbjct: 188 ILRDEAIHGVYVGMLAQQVYARLPEGEQSRLRTALREDLEKLSALEEAYTEELYAPIGRV 247 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLK-KEKNFFETRVTEY 343 ++ ++ A++ +G P F E P + I L+ K +FF T+ Y Sbjct: 248 ----EEVRRFCRYNADKALMNLGQPPYFGVRAEEVNPVVLAGISLRTKNHDFFSTKGNGY 303 >gi|62181312|ref|YP_217729.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615703|ref|YP_001589668.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552693|ref|ZP_02346445.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168822877|ref|ZP_02834877.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197265553|ref|ZP_03165627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205353758|ref|YP_002227559.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858077|ref|YP_002244728.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|62128945|gb|AAX66648.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365067|gb|ABX68835.1| hypothetical protein SPAB_03488 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197243808|gb|EDY26428.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205273539|emb|CAR38525.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322691|gb|EDZ10530.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205340791|gb|EDZ27555.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709880|emb|CAR34233.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320087214|emb|CBY96980.1| ribonucleoside-diphosphate reductase beta chain [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322715798|gb|EFZ07369.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326628866|gb|EGE35209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 319 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/273 (20%), Positives = 111/273 (40%), Gaps = 39/273 (14%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 P L +F EAVH+ ++ I ++L + + A W+ Sbjct: 85 --------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAWS 125 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + +D+ + + V E FY+GF + K+ A+ Sbjct: 126 EENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTAD 183 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I+RDE++H + I QI ++ + +E + + +L E EI Y Sbjct: 184 LIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEICYTEALYA 242 Query: 282 K-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + G+V + ++ + AN+ +G E LF Sbjct: 243 ETGWVN----DVKAFLCYNANKALMNLGYEALF 271 >gi|227833933|ref|YP_002835640.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|262184936|ref|ZP_06044357.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|227454949|gb|ACP33702.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] Length = 329 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/273 (20%), Positives = 110/273 (40%), Gaps = 29/273 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ WK+ LT+ E+ R +++ +++ Sbjct: 37 TGNFWLPEKVPVSNDIPSWKT---LTEKEQETTMRVFAGLTLLDTIQGTVGAVSLLPDAV 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I +L + F E ++ KA + Y Q Sbjct: 94 TPHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFRWSEENENLQRKAKIVMSYYQ 153 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 154 -------------GDNPLKKK--VASTLLESFLFYSGFFLPMHFSSRAKLTNTADIIRLI 198 Query: 228 MRDESLH---LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 +RDE++H + + Q K+ P +E + + +L++ EI Y + + Sbjct: 199 IRDEAVHGYYIGYKFQQGYQ-KLSEPE--QEEMKGYAFDLLYDLYENEIDYTEDLYDE-- 253 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +G ++++++ AN+ + +G E LF E Sbjct: 254 LGWTE-DVKRFLRYNANKALNNLGFEGLFPADE 285 >gi|70607897|ref|YP_256767.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus acidocaldarius DSM 639] gi|68568545|gb|AAY81474.1| ribonucleoside-diphosphate reductase [Sulfolobus acidocaldarius DSM 639] Length = 314 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 32/209 (15%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P ++ D WK L+ DE+ + + F + E VA +I I ++ Sbjct: 43 WDPAKIDFSKDKEDWKK---LSKDEKNYLLNIVSLFMAGEEAVAVDITPLISTMINEGRV 99 Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGL-DEGELFN----------MYREVPSITAKAN 160 YL + AFEEA H+ F+ SL + D+ +F Y E+PS+ Sbjct: 100 EDVIYLEQFAFEEAKHAEAFRRFCDSLEINDDLTIFTTEYNPWYQKIFYEELPSVM---- 155 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 W L+ + + + T +L+V V E Y F I + N M G+ Sbjct: 156 WKLRVDPSPENLAVAVTT--------YNLYVEGVAAESG--YKTFKHIFN--SLNIMPGL 203 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIEN 249 ++ I DES H+ +G +I ++ +EN Sbjct: 204 SKTVNLIATDESRHIAYGTYLITRLIVEN 232 >gi|224584592|ref|YP_002638390.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469119|gb|ACN46949.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 319 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/273 (20%), Positives = 111/273 (40%), Gaps = 39/273 (14%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 P L +F EAVH+ ++ I ++L + + A W+ Sbjct: 85 --------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAWS 125 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + +D+ + + V E FY+GF + K+ A+ Sbjct: 126 EENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTAD 183 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I+RDE++H + I QI ++ + +E + + +L E EI Y Sbjct: 184 LIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEICYTEALYA 242 Query: 282 K-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + G+V + ++ + AN+ +G E LF Sbjct: 243 ETGWVN----DVKAFLCYNANKALMNLGYEALF 271 >gi|170765644|ref|ZP_02900455.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia albertii TW07627] gi|170124790|gb|EDS93721.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia albertii TW07627] Length = 319 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/265 (19%), Positives = 105/265 (39%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAAEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + L K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYLSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I +Q E L + E ++ + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKHQKNQEKISLTQREELKRFAFDLLLELYDNELQYTDELYAETTW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|212712928|ref|ZP_03321056.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM 30120] gi|212684406|gb|EEB43934.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM 30120] Length = 323 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 22/187 (11%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHLS 109 +N W+P ++P+ +D W + TD+++L I+ G + + N + + Sbjct: 32 SNFWLPEKIPLSNDTVSWNTLK--TDEQQLTIRVFTGL--TLLDTIQNTVGAPCLMEDAQ 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P L +F EAVH+ ++ I ++L +D E + E ++ KA L Y Sbjct: 88 TPHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDEAYRWSEENTALQNKAKIILSYY- 146 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D L+ V V E FY+GF + K+ A+ + I Sbjct: 147 -------------CDSHPLKKK-VASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLI 192 Query: 228 MRDESLH 234 +RDE++H Sbjct: 193 IRDEAIH 199 >gi|311993225|ref|YP_004010091.1| aerobic NDP reductase, small subunit [Enterobacteria phage CC31] gi|284178063|gb|ADB81729.1| aerobic NDP reductase, small subunit [Enterobacteria phage CC31] Length = 379 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 65/310 (20%), Positives = 128/310 (41%), Gaps = 38/310 (12%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D A ++ L ++ + NL + + +S+ + +S+P Sbjct: 36 WRPEEVNLMTDRAQFEK---LPVGQQNVFLDNLKYQSLLDSIQGRAPAAVLSALISDPSL 92 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA-------------- 159 + F E +HS ++ +I+ +L D ++F+ +I +A Sbjct: 93 DTWNQTWTFSETIHSRSYTHIMRNLLNDPAKVFDEIVLDEAIMKRAETIGHYYDDVILKT 152 Query: 160 ----NWALQYTQTLSSPS------FTTGTKDADQEFLQDLFVFYVVFEGM---WFYTGFA 206 N +Y ++L S + DA +E ++ L++ V G+ FY FA Sbjct: 153 RLWENAKERYEESLGSCQQNDIEMYEGYVIDAKRELMKALYLCLHVINGLEAIRFYVSFA 212 Query: 207 QILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWT---KEFQQKS 261 + + + M G ++ ++I RDE LHL +I Q+++ + W +E +Q++ Sbjct: 213 CTFNFHKNMEIMEGNSKIMKFIARDEQLHLKGTQYIIRQLQLGTDGEEWVQIARECEQEA 272 Query: 262 RTMLHEATLLEIAYA-HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TEN 318 + E E +A H G GL+ ++ ++ R GL P+ + Sbjct: 273 VDIFMEINRQEKEWAVHLWRDGGVPGLSVKILHDFIDYLTVSRMRSCGLPCPITDAPVRH 332 Query: 319 PFPWMSEVID 328 P PW+ E ++ Sbjct: 333 PIPWIREYLN 342 >gi|298256109|gb|ADI71333.1| ribonucleoside diphosphate reductase beta subunit-like protein [Short-finned eel ranavirus] Length = 202 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 15/186 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F + Sbjct: 32 PFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQLDVE 90 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + + + E R L A EA+H + + +LG+ + E + + + + Sbjct: 91 VGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADYEEM 149 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 T K ++ ++ + P A V+ EG+ + F +++ R Sbjct: 150 TDKLDF-MREMDCSTLPGLARSLFRA------------VLNEGVSLFAAFVMLMTFQRRG 196 Query: 216 KMVGIA 221 KM G+ Sbjct: 197 KMKGMG 202 >gi|331701739|ref|YP_004398698.1| ribonucleoside-diphosphate reductase [Lactobacillus buchneri NRRL B-30929] gi|329129082|gb|AEB73635.1| Ribonucleoside-diphosphate reductase [Lactobacillus buchneri NRRL B-30929] Length = 318 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/280 (22%), Positives = 115/280 (41%), Gaps = 31/280 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL+ W++ L D + ++ G ++L + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 ++ + + L F E+VH+ ++ I ++L + E+F+ + KA Sbjct: 75 ASLRKDVQTQHETAVLNNIQFMESVHAKSYSSIFSTLNTPDQIDEIFDWSDSEEFLQNKA 134 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 L D ++ + +F+ E FY+GF L NK+ Sbjct: 135 ---------LKIRDIYANEPDPLKKKVASVFL-----ETFLFYSGFYTPLWYLGHNKIPN 180 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 +AE + I+RDES+H G + + +I L KE Q+ + +++ L Y +E Sbjct: 181 VAEIIKLILRDESVH---GTYIGYKFQIGYNQL-PKEKQEDMKNWIYD--FLYKLYGNEE 234 Query: 280 MPKGFVGLNAPSCEQYMQFI---ANRRCHQIGLEPLFKYT 316 + E + FI AN+ +G +PLF T Sbjct: 235 KYTHILYDQTGWTEDVLTFIRYNANKALMNLGQDPLFPDT 274 >gi|16078802|ref|NP_389621.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|221309618|ref|ZP_03591465.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|221313941|ref|ZP_03595746.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318864|ref|ZP_03600158.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. JH642] gi|221323136|ref|ZP_03604430.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. SMY] gi|321315508|ref|YP_004207795.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis BSn5] gi|1710395|sp|P50621|RIR2_BACSU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|1154633|emb|CAA92811.1| NrdF [Bacillus subtilis subsp. subtilis str. 168] gi|2634123|emb|CAB13623.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus subtilis subsp. subtilis str. 168] gi|116733911|gb|ABK20014.1| ribonucleotide-diphosphate reductase beta [synthetic construct] gi|291484287|dbj|BAI85362.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. natto BEST195] gi|320021782|gb|ADV96768.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis BSn5] Length = 329 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/298 (21%), Positives = 124/298 (41%), Gaps = 20/298 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + DL WK D + + L + + IV H+ + Sbjct: 30 WLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVA---EHVDGHQR 86 Query: 114 RQYLLRQAF-EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170 + L A E AVH+ ++ I +L E E+F ++ + KA + + + Sbjct: 87 KAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQMIVGLYKAIQ 146 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 KD D+ L V V E FY+GF L K++ E I+RD Sbjct: 147 --------KD-DEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E++H + + +I + E ++ + +L++ E+ Y + + VGL + Sbjct: 198 EAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYDQ--VGL-SH 254 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGA 347 ++++++ AN+ +G +P F+ E+ P + ++ K K +FF + Y++ Sbjct: 255 DVKKFIRYNANKALMNLGFDPYFE-EEDINPIVLNGLNTKTKSHDFFSMKGNGYKKAT 311 >gi|154686152|ref|YP_001421313.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus amyloliquefaciens FZB42] gi|154352003|gb|ABS74082.1| NrdF [Bacillus amyloliquefaciens FZB42] Length = 329 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/298 (21%), Positives = 124/298 (41%), Gaps = 20/298 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + DL WK D + + L + + IV H+ + Sbjct: 30 WLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVA---EHVEGHQR 86 Query: 114 RQYLLRQAF-EEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170 + L A E AVH+ ++ I +L E E+F ++ + KA + + + Sbjct: 87 KAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQMIVGLYKAIQ 146 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 KD D+ L V V E FY+GF L K++ E I+RD Sbjct: 147 --------KD-DEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E++H + + +I + E ++ + +L++ E+ Y + + VGL + Sbjct: 198 EAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYDQ--VGL-SH 254 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGA 347 ++++++ AN+ +G +P F+ E+ P + ++ K K +FF + Y++ Sbjct: 255 DVKKFIRYNANKALMNLGFDPYFE-EEDINPIVLNGLNTKTKSHDFFSMKGNGYKKAT 311 >gi|313884792|ref|ZP_07818546.1| ribonucleoside-diphosphate reductase, beta subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619991|gb|EFR31426.1| ribonucleoside-diphosphate reductase, beta subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 363 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 62/292 (21%), Positives = 116/292 (39%), Gaps = 56/292 (19%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+ E+ M+ + G +++ + Sbjct: 22 TWEKL---TEQFWLDTRIPVSNDLDDWRR---LSKAEQDMVGKVFGGLTLLDTVQSEQGA 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + R L F E+VH+ ++ I +L N E+ +I Sbjct: 76 IVLLPDARTSHERSVLSNIHFMESVHAKSYSTIFITL--------NTNAEIDAIFEWTDT 127 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMV 218 + +Q+ + + TGT LQ V+ E FY+GF A + LG NK+ Sbjct: 128 HELIQFKSDKINRIYQTGTP------LQKKAA-SVLLESFLFYSGFYAPLWYLGN-NKLP 179 Query: 219 GIAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEF-------QQKSRTM 264 +AE + I+RDES+H G + +++ E W ++K + Sbjct: 180 NVAEIIKLILRDESVHGTYIGYKFQLGYNALSETDQEELKQWVFNLCFELYSNEEKYTSY 239 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +++ E+ + E ++++ AN+ +G +PLF T Sbjct: 240 IYD----ELGWTEE-------------VNTFVRYNANKALQNLGFDPLFADT 274 >gi|308187851|ref|YP_003931982.1| ribonucleoside-diphosphate reductase beta chain [Pantoea vagans C9-1] gi|308058361|gb|ADO10533.1| ribonucleoside-diphosphate reductase beta chain [Pantoea vagans C9-1] Length = 326 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/264 (20%), Positives = 100/264 (37%), Gaps = 19/264 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +DL W++ + + + L + ++++ + Sbjct: 34 TSNFWLPEKVPLSNDLPGWQTLDKQQQQLTIRVFTGLTLLDTIQNVIG---APGLMEDAI 90 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + A W+ + Sbjct: 91 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------NTQDVDAAYQWSEENGPLQ 139 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + AD + + V E FY+GF + K+ A+ + I+R Sbjct: 140 NKARIILEHYRADDPLKKK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLIIR 197 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE++H + Q L +E QQ + +L E+AY G VG Sbjct: 198 DEAVHGYYIGYKYQQALASADDLRREELQQFAYDLLLALYENEVAYTEALY--GDVGW-V 254 Query: 290 PSCEQYMQFIANRRCHQIGLEPLF 313 + ++ + AN+ +G E LF Sbjct: 255 DEVKTFLHYNANKALMNLGYEALF 278 >gi|322692090|ref|YP_004221660.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|320456946|dbj|BAJ67568.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. longum JCM 1217] Length = 330 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 61/308 (19%), Positives = 122/308 (39%), Gaps = 27/308 (8%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI K + + D+ + ++ N+L K W++ N W+P +VP+ +D+ Sbjct: 1 MAPISIPRKPLKLIDRV---SATNWNRLEDEKDLEVWDR---LTGNFWLPEKVPVSNDIP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ +T+DE + R +++ +++ P AF E+V Sbjct: 55 SWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 H+ ++ I ++L E I A +W+ + D + Sbjct: 112 HAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQKKAEIVLDYYEGDNPYK 160 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V + E FY+GF + K+ A+ + I+RDE++H + I Q Sbjct: 161 RK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVH-GYYIGYKYQKG 217 Query: 247 IENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 I + + Q + +L+E E+ Y + VGL E+++++ N+ Sbjct: 218 IAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGL-TDDVEKFLRYNGNKALM 274 Query: 306 QIGLEPLF 313 +G LF Sbjct: 275 NLGYPALF 282 >gi|328912184|gb|AEB63780.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus amyloliquefaciens LL3] Length = 305 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 62/298 (20%), Positives = 120/298 (40%), Gaps = 20/298 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + DL WK D + + L + + N + + H+ + Sbjct: 11 WLPEEIALNGDLLTWKYLGTKEQDTYMKVLAGLTLLDTEQ---GNTGMPIVAEHVEGHQR 67 Query: 114 RQYL-LRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170 + L E AVH+ ++ I +L E E+F ++ + KA+ + + + Sbjct: 68 KAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKQNKYLQKKAHTVVGLYRAI- 126 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 K D+ L V V E FY+GF L K++ E I+RD Sbjct: 127 --------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMNSGEIVNLIIRD 178 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E+LH + + +I + + KE + + +L + E+ Y + VGL Sbjct: 179 EALHGVYTGLLAQEIYSKQTEIKKKELYKWTIDLLLDLYENELDYTTDLYDP--VGL-TH 235 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++++++ AN+ + +G + F E NP ++ + K +FF + Y++ Sbjct: 236 DVKKFIRYNANKALNNLGFDHYFHEEEINPVV-LNGLSTKTKSMDFFSQKGNSYRKAT 292 >gi|218680499|ref|ZP_03528396.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli CIAT 894] Length = 324 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/271 (21%), Positives = 110/271 (40%), Gaps = 33/271 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ + + Sbjct: 32 TGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGSIRLMEDAI 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L ++ N YR ++ N LQ L Sbjct: 89 TPHEEAVLSNVSFMEAVHARSYSSIFSTL-CSTPDVDNAYR-----WSEENEFLQRKSAL 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + +G + V V E FY+GF + K+ A+ + I+R Sbjct: 143 IMEQYASGDPLKKK-------VASVFLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIR 195 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H + G++++ + + +E + + +L E E Y + Sbjct: 196 DEAVHGYYIGYKFQRGLELLGEER-------RQELKDFAFDLLLELYDNEARYTEALYDR 248 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VGL ++++ + AN+ +G E LF Sbjct: 249 --VGL-TEDVKEFLHYNANKALMNLGYEALF 276 >gi|218547807|ref|YP_002381598.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia fergusonii ATCC 35469] gi|218355348|emb|CAQ87955.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia fergusonii ATCC 35469] Length = 319 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAAEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYTWSEENASLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDNPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISLAQREELKSFAFDLLLELYDNELQYTDELYAETTW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|116253995|ref|YP_769833.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium leguminosarum bv. viciae 3841] gi|115258643|emb|CAK09747.1| putative ribonucleoside-diphosphate reductase beta subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 324 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 62/268 (23%), Positives = 112/268 (41%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ + + + Sbjct: 32 TGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGSIRLMEDAA 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L ++ + YR ++ N LQ L Sbjct: 89 TPHEEAVLSNVSFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSAL 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + +G + V V E FY+GF + K+ A+ + I+R Sbjct: 143 IMEQYRSGDPLKKK-------VASVFLESFLFYSGFYLPMYWSSRAKLTNTADMVRLIIR 195 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFV 285 DE++H + I Q +E E +Q+ + E LLE+ A E + G V Sbjct: 196 DEAVH-GYYIGYKFQRGLER---LGDERKQEIKDFAFE-LLLELYDNEAKYTEALYDG-V 249 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 GL ++++ + AN+ +G E LF Sbjct: 250 GLT-EDVKKFLHYNANKALMNLGYEALF 276 >gi|239622882|ref|ZP_04665913.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133660|ref|YP_004000999.1| nrdf [Bifidobacterium longum subsp. longum BBMN68] gi|317482331|ref|ZP_07941351.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA] gi|322690138|ref|YP_004209872.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum subsp. infantis 157F] gi|239514879|gb|EEQ54746.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517762|emb|CBK71378.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bifidobacterium longum subsp. longum F8] gi|311772922|gb|ADQ02410.1| NrdF [Bifidobacterium longum subsp. longum BBMN68] gi|316916211|gb|EFV37613.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA] gi|320461474|dbj|BAJ72094.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. infantis 157F] Length = 330 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/265 (20%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ +T+DE + R +++ +++ Sbjct: 38 TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P AF E+VH+ ++ I ++L E I A +W+ Sbjct: 95 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQ 143 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + + V + E FY+GF + K+ A+ + I+R Sbjct: 144 KKAEIVLDYYEGDNPYKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIR 201 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q I + + Q + +L+E E+ Y + VGL Sbjct: 202 DEAVH-GYYIGYKYQKGIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGL- 257 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 E+++++ N+ +G LF Sbjct: 258 TDDVEKFLRYNGNKALMNLGYPALF 282 >gi|168244605|ref|ZP_02669537.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168464072|ref|ZP_02697989.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194442875|ref|YP_002042053.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450827|ref|YP_002046771.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194401538|gb|ACF61760.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409131|gb|ACF69350.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633109|gb|EDX51523.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205336532|gb|EDZ23296.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 319 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/274 (20%), Positives = 111/274 (40%), Gaps = 39/274 (14%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT 84 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 P L +F EAVH+ ++ I ++L + + A W Sbjct: 85 ---------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAW 124 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + +D+ + + V E FY+GF + K+ A Sbjct: 125 SEENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTA 182 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + + I+RDE++H + I QI ++ + +E + + +L E EI Y Sbjct: 183 DLIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALNLLMELYDNEIRYTEALY 241 Query: 281 PK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + G+V + ++ + AN+ +G E LF Sbjct: 242 AETGWVN----DVKAFLCYNANKALMNLGYEALF 271 >gi|3068719|gb|AAC14561.1| ribonucleoside diphosphate reductase small subunit [Corynebacterium ammoniagenes] Length = 329 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/275 (18%), Positives = 107/275 (38%), Gaps = 33/275 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W N +T E+L R +++ +++ + Sbjct: 37 TGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDVE 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 AF E+VH+ ++ I +L P I W+ + Sbjct: 94 TMHEEGVYTNIAFMESVHAKSYSNIFMTLA-----------STPQINEAFRWSEENENLQ 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + V + E FY+GF + L K+ A+ + I+R Sbjct: 143 RKAKIIMSYYNGDDPLKKK--VASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIR 200 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DES+H + G+ +++ + E E++ + ++++ EI Y + Sbjct: 201 DESVHGYYIGYKYQQGVKKLSEAEQE-------EYKAYTFDLMYDLYENEIEYTEDIYDD 253 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +G ++++++ AN+ + +G E LF E Sbjct: 254 --LGW-TEDVKRFLRYNANKALNNLGYEGLFPTDE 285 >gi|172041159|ref|YP_001800873.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium urealyticum DSM 7109] gi|171852463|emb|CAQ05439.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium urealyticum DSM 7109] Length = 331 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 56/272 (20%), Positives = 110/272 (40%), Gaps = 31/272 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + N + + + L + + V +++ + Sbjct: 41 NFWLPEKVPVSNDIQSWATLNDAEKNATMRVFTGLTMLDTIQGTVG---AVSLIPEATTM 97 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169 L AF E+VH+ ++ I +L + F E ++ K LQY + Sbjct: 98 HEEAVLTNIAFMESVHAKSYSQIFMTLASTREINDAFRWSEENENLQRKGEIILQYYK-- 155 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V+ E FY+GF + K+ A+ + I+R Sbjct: 156 -----------GDDPLKRK--IASVLLESFLFYSGFYLPMRWSSMGKLTNTADIIRLIIR 202 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285 DES+H + I Q +EN + E Q++ + + E L E+ Y + + Sbjct: 203 DESVH-GYYIGYKYQRALENE---SPERQEELKGFVVEQLLDLYDNEVEYTESIYDE--I 256 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 G ++++++ AN+ + +G + LF E Sbjct: 257 GW-TEDVKRFLRYNANKAMNNLGYDGLFPVEE 287 >gi|307547024|ref|YP_003899503.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas elongata DSM 2581] gi|307219048|emb|CBV44318.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas elongata DSM 2581] Length = 324 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 61/301 (20%), Positives = 119/301 (39%), Gaps = 24/301 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P ++P+ +D+ W N L D E+ + R +++ A+ Sbjct: 32 TSNFWLPEKIPLSNDVPSW---NTLNDREQQLTIRVFTGLTLLDTIQGTIGAPALIEDAV 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P +F E+VH+ ++ I ++L ++ + YR W+ + T Sbjct: 89 TPHEEAVFTNISFMESVHARSYSSIFSTLCATR-DVDDAYR----------WSEENTHLQ 137 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D ++ V V E FY+GF + K+ A+ + I+R Sbjct: 138 NKAELILERYRTDDPLMRK--VASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIR 195 Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + G ++ E+ ++ + + +L + E+ Y + VGL Sbjct: 196 DEAVHGYYIGYKFQRALEKESAER-QRQIKDTTYDLLLDLYDNEVQYTESLYDE--VGL- 251 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEKN--FFETRVTEYQQ 345 + ++ + AN+ +G E LF TE P + + E+N FF + Y Sbjct: 252 TEDVKAFLHYNANKALMNLGYEALFPNATEAVDPAILAALSPGAEENHDFFSGSGSSYVI 311 Query: 346 G 346 G Sbjct: 312 G 312 >gi|259502687|ref|ZP_05745589.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM 16041] gi|259169332|gb|EEW53827.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM 16041] Length = 339 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 65/284 (22%), Positives = 120/284 (42%), Gaps = 38/284 (13%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L +D + + G +++ + + Sbjct: 28 TWEK---LTEQFWLDTRIPVSNDLDDWRN---LDEDHQWTVGHVFGGLTLLDTVQSEAGM 81 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 A+ + L F E+VH+ ++ I ++L N E+ I NW Sbjct: 82 TALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTL--------NSPDEIDEI---FNW 130 Query: 162 A-----LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + LQ T + + +D ++ + ++F+ E FY+GF L N+ Sbjct: 131 SDTEEYLQNKATKIANMYLNPAEDPLKKKVANVFL-----ETFLFYSGFYTPLYYLGHNE 185 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLE 272 + +AE + I+RDES+H G V + ++ H T++ QQ + L+E E Sbjct: 186 LNNVAEIIKLILRDESVH---GTYVGYKFQV-GLHERTEKQQQDMKDWMYNFLYELYDNE 241 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Y H K +G ++++ AN+ +G +PLF T Sbjct: 242 EKYTHLLYDK--IGW-TDDVLTFIRYNANKALMNLGQDPLFPDT 282 >gi|146189565|emb|CAM91784.1| hypothetical protein [Platynereis dumerilii] Length = 87 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W+ Y A + W EV + D+A W+S L DER I L FFA+S+ +V N+V Sbjct: 4 WQFYKRAEASFWTAEEVDLSKDVAQWES---LKKDERHFISHVLAFFAASDGIVNENLVE 60 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHS 128 + + E R + Q E +HS Sbjct: 61 RFSKEVQVTEARFFYGFQIAIENIHS 86 >gi|163848862|ref|YP_001636906.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus aurantiacus J-10-fl] gi|222526817|ref|YP_002571288.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus sp. Y-400-fl] gi|163670151|gb|ABY36517.1| ribonucleotide reductase [Chloroflexus aurantiacus J-10-fl] gi|222450696|gb|ACM54962.1| ribonucleotide reductase [Chloroflexus sp. Y-400-fl] Length = 297 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/233 (20%), Positives = 102/233 (43%), Gaps = 17/233 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-- 111 W P+ + + D+ W+ L D+ER ++ R F + E V ++ L + R ++ Sbjct: 32 WNPSLIDLSRDIRDWEQ---LRDEERDLLLRLTALFQAGEEAVTLDL-LPLIRTIAREGR 87 Query: 112 -ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 E YL FEEA H+ F I+ + + +L + A++ + L Sbjct: 88 LEEELYLTTFLFEEAKHTDFFARFISEVARVDPDLSRYH--------TASYRALIYEALP 139 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIMR 229 + + + + ++ EG+ TG+ A L + M G E + + + Sbjct: 140 AALHRLDHDPSPLNLAEASLTYNMIVEGVLAETGYHAYFTILDSQDIMPGTREGIRLLKQ 199 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYAHETMP 281 DES H+ +G+ +++++ +P +W ++ + +L+ ++ EI ++ MP Sbjct: 200 DESRHIAYGVYLLSRLIATDPQVWDHIVERMNELVLYAMGVIDEIFACYDPMP 252 >gi|168238723|ref|ZP_02663781.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737146|ref|YP_002115764.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712648|gb|ACF91869.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288484|gb|EDY27861.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 319 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/274 (20%), Positives = 111/274 (40%), Gaps = 39/274 (14%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT 84 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 P L +F EAVH+ ++ I ++L + + A W Sbjct: 85 ---------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAW 124 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + +D+ + + V E FY+GF + K+ A Sbjct: 125 SEENPTLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTA 182 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + + I+RDE++H + I QI ++ + +E + + +L E EI Y Sbjct: 183 DLIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALY 241 Query: 281 PK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + G+V + ++ + AN+ +G E LF Sbjct: 242 AETGWVN----DVKAFLCYNANKALMNLGYEALF 271 >gi|295097265|emb|CBK86355.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 319 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/287 (20%), Positives = 116/287 (40%), Gaps = 45/287 (15%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++ V A+ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSHAEQQLTIRVFTGLTLLDTIQNTVG---APALMSDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P + +F EAVH+ ++ + ++L D + E S+ KA+ L+Y + Sbjct: 84 TPHEEAVMSNISFMEAVHARSYSSVFSTLCQTRDVDAAYAWSEESASLQRKADLVLEYYR 143 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 AD+ + + V E FY+GF + K+ A+ + I Sbjct: 144 -------------ADEPLKKK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLI 188 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G++ ++ K E E + + +L + E++Y E Sbjct: 189 IRDEAVHGYYIGYKYQKGLEKVSAEKRE-------ELKGFALDLLMDLYDNELSYTEEL- 240 Query: 281 PKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 + G + ++ + AN+ +G E LF P M+EV Sbjct: 241 ---YAGTGWEEDVKAFLCYNANKALMNLGYEALFP------PEMAEV 278 >gi|16766119|ref|NP_461734.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992529|ref|ZP_02573627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233769|ref|ZP_02658827.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469894|ref|ZP_03075878.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251114|ref|YP_002147708.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204929699|ref|ZP_03220773.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238909579|ref|ZP_04653416.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|585861|sp|P17424|RIR4_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta; AltName: Full=R2F protein; AltName: Full=Ribonucleotide reductase 2 gi|4389108|pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium (Oxidized) gi|4389109|pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium (Oxidized) gi|4389155|pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium gi|4389156|pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium gi|109157246|pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From Salmonella Typhimurium gi|109157247|pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From Salmonella Typhimurium gi|311979|emb|CAA51695.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421357|gb|AAL21693.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194456258|gb|EDX45097.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197214817|gb|ACH52214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204321418|gb|EDZ06618.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205329263|gb|EDZ16027.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332191|gb|EDZ18955.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|261247949|emb|CBG25782.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994924|gb|ACY89809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159373|emb|CBW18891.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913831|dbj|BAJ37805.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223605|gb|EFX48670.1| Ribonucleotide reductase of class Ib aerobic, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131164|gb|ADX18594.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989685|gb|AEF08668.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 319 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/274 (20%), Positives = 111/274 (40%), Gaps = 39/274 (14%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIV 101 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT 84 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 P L +F EAVH+ ++ I ++L + + A W Sbjct: 85 ---------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAW 124 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + +D+ + + V E FY+GF + K+ A Sbjct: 125 SEENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTA 182 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + + I+RDE++H + I QI ++ + +E + + +L E EI Y Sbjct: 183 DLIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEALY 241 Query: 281 PK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + G+V + ++ + AN+ +G E LF Sbjct: 242 AETGWVN----DVKAFLCYNANKALMNLGYEALF 271 >gi|238594383|ref|XP_002393469.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553] gi|215460986|gb|EEB94399.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553] Length = 184 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + DL W N + D+ER I L FFA+S+ Sbjct: 99 LFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWN--NRMNDNERHFISHVLAFFAASD 156 Query: 94 SLVANNIVLAIYRHLSNPECRQY 116 +V N+V + E R + Sbjct: 157 GIVNENLVERFSNEVQAAEARCF 179 >gi|38234435|ref|NP_940202.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium diphtheriae NCTC 13129] gi|38200698|emb|CAE50394.1| ribonucleotide reductase beta-chain 1 [Corynebacterium diphtheriae] Length = 328 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 52/269 (19%), Positives = 102/269 (37%), Gaps = 21/269 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W + N L + + L + + V +L L Sbjct: 36 TGNFWLPEKIPVSNDIKSWNTLNDLEKQTTMRVFTGLTLLDTIQGTVGAVSMLPDAVSLH 95 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + AF E+VH+ ++ I +L P I W+ + Sbjct: 96 EEAVYTNI---AFMESVHAKSYSNIFMTLA-----------STPEINDAFRWSEENENLQ 141 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + V + E FY+GF + K+ A+ + I+R Sbjct: 142 KKAKIILSYYEGDDPLKRK--VASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIR 199 Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + G ++ E P E + + +L++ EI Y + +G Sbjct: 200 DEAVHGYYIGYKFQQALRKETPER-QAELKGYTFDLLYDLYDNEIQYTEDLYDD--LGW- 255 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++++++ AN+ + +G E LF E Sbjct: 256 TEDVKRFLRYNANKALNNLGYEALFPADE 284 >gi|46255232|ref|YP_006144.1| ribonucleoside-diphosphate reductase beta chain [Thermus thermophilus HB27] gi|46198081|gb|AAS82491.1| ribonucleoside-diphosphate reductase beta chain [Thermus thermophilus HB27] Length = 324 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 69/306 (22%), Positives = 128/306 (41%), Gaps = 30/306 (9%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDD-ERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +++W+ TE Q DL + L D+ ER +++R L A E L +Y Sbjct: 27 HSYWVHTEFSFQSDL----QDHALADEKERSLVERALLAIAQVE-LAVKLFWARVYDRFP 81 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 PE + L A E H++ + +++ LGL+E F E A+ Q L Sbjct: 82 KPEIAEVGLTFAESEVRHANAYAHLLELLGLEEA--FGQALE------GASALRDRAQAL 133 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIM 228 KD +E+ LF+F E + ++ F +++L R N+ GI+ + Sbjct: 134 GEALRRAQGKDL-REYALALFLFSAFTEHVSLFSQFYVLMALNRRGNRYKGISNAIEATS 192 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 ++E++H FG++++ ++ E+P + FQ+++ + + A E + Sbjct: 193 KEENVHGLFGVELLRLLRTEHPEALGEGFQEEALRLAQ-----GLFRAEEALLDWLFSAG 247 Query: 289 APSC---EQYMQFIANRRCHQI---GLEPLFKYTENPF---PWMSEVIDLKKEKNFFETR 339 P+ + ++F+ R + GL P F E W + + KE +FF R Sbjct: 248 EPALVGHRETLEFLKGRYNQVLALHGLPPPFPVDEKALRDTEWFTLELLADKEVDFFNKR 307 Query: 340 VTEYQQ 345 Y + Sbjct: 308 SVAYAR 313 >gi|225686158|ref|YP_002734130.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis ATCC 23457] gi|256043236|ref|ZP_05446173.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|256262715|ref|ZP_05465247.1| ribonucleotide reductase [Brucella melitensis bv. 2 str. 63/9] gi|260564448|ref|ZP_05834933.1| ribonucleotide reductase [Brucella melitensis bv. 1 str. 16M] gi|265989661|ref|ZP_06102218.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|225642263|gb|ACO02176.1| Ribonucleoside-diphosphate reductase [Brucella melitensis ATCC 23457] gi|260152091|gb|EEW87184.1| ribonucleotide reductase [Brucella melitensis bv. 1 str. 16M] gi|263000330|gb|EEZ13020.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|263092503|gb|EEZ16756.1| ribonucleotide reductase [Brucella melitensis bv. 2 str. 63/9] gi|326410495|gb|ADZ67559.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis M28] gi|326553787|gb|ADZ88426.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis M5-90] Length = 329 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W++ L E+ + R +++ + + Sbjct: 37 TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTTRVFTGLTLLDTIQNAVGAVKLMDDAL 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L L P + W+ + Sbjct: 94 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + AD + + V E FY+GF + K+ A+ + I+R Sbjct: 143 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 200 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285 DE++H + I Q +E + ++E +Q+ + E L E+ Y E + G V Sbjct: 201 DEAVH-GYYIGYKFQRALE---VLSEEKRQEIKDFAFELLLELYDNEVRYT-EALYDG-V 254 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 GL ++++ + AN+ +G E LF Sbjct: 255 GLT-EDVKKFLHYNANKALMNLGYEALF 281 >gi|183598095|ref|ZP_02959588.1| hypothetical protein PROSTU_01459 [Providencia stuartii ATCC 25827] gi|188020253|gb|EDU58293.1| hypothetical protein PROSTU_01459 [Providencia stuartii ATCC 25827] Length = 323 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 56/267 (20%), Positives = 108/267 (40%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D++ W N LT E+ + R +++ ++ Sbjct: 31 TTNFWLPEKIPLSNDISSW---NTLTAAEQQLTIRVFTGLTLLDTIQNTVGAPSLMSDAL 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166 P L +F EAVH+ ++ I ++L ++ + YR E ++ KA + Y Sbjct: 88 TPHEEAVLSNISFMEAVHARSYSSIFSTL-CSTSDVDDAYRWSEENSALQNKAKIIMSYY 146 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 D L+ V V E FY+GF + K+ A+ + Sbjct: 147 --------------CDSHPLKKK-VASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRL 191 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 I+RDE++H + + ++ KE + + ++L + E+ Y E VG Sbjct: 192 IIRDEAIHGYYIGYKFQKSLLKYDEKTQKEIKDFTFSLLFDLYENEVNYTQELYDT--VG 249 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++++ + AN+ +G E LF Sbjct: 250 W-TEDVKKFLHYNANKALMNLGYEALF 275 >gi|324111310|gb|EGC05292.1| ribonucleotide reductase [Escherichia fergusonii B253] Length = 319 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAAEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYTWSEENASLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISLAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|229172092|ref|ZP_04299657.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus MM3] gi|228611435|gb|EEK68692.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus MM3] Length = 193 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 12/178 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIVTSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 P T ++ L V V E FY+GF L L K+ E I+R Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIR 193 >gi|157692410|ref|YP_001486872.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus pumilus SAFR-032] gi|194015081|ref|ZP_03053698.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus pumilus ATCC 7061] gi|157681168|gb|ABV62312.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus pumilus SAFR-032] gi|194014107|gb|EDW23672.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus pumilus ATCC 7061] Length = 326 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 66/298 (22%), Positives = 123/298 (41%), Gaps = 20/298 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + DL WK L + ER + L ++ N + + H+ + Sbjct: 30 WLPEEISLNGDLLTWKY---LGEKERDTYMKVLAGLTLLDTEQGNTGMPIVAEHVEGHQR 86 Query: 114 RQYL-LRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170 + L E AVH+ ++ I +L E E+F ++ + KA+ + +++ Sbjct: 87 KAVLNFMAMMENAVHAKSYSNIFMTLAPTETISEVFEWVKKNKFLQKKADMIVSLYRSIQ 146 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 KD D L V V E FY+GF L K++ E I+RD Sbjct: 147 --------KD-DPISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E++H + + +I + KE S +L+E E+ Y + + V L + Sbjct: 198 EAIHGVYVGLLAQEIYNKQTPDVQKELYDFSIDLLNELYENELHYTEDIYDQ--VNL-SH 254 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++++++ AN+ +G P F+ E NP ++ + K +FF + Y++ Sbjct: 255 DVKKFIRYNANKALMNLGFAPYFEEEEINPIV-LNGLNTKTKSHDFFSMKGNGYKKAT 311 >gi|17989274|ref|NP_541907.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 1 str. 16M] gi|17985137|gb|AAL54171.1| ribonucleoside-diphosphate reductase beta chain [Brucella melitensis bv. 1 str. 16M] Length = 335 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W++ L E+ + R +++ + + Sbjct: 43 TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTTRVFTGLTLLDTIQNAVGAVKLMDDAL 99 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L L P + W+ + Sbjct: 100 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + AD + + V E FY+GF + K+ A+ + I+R Sbjct: 149 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 206 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285 DE++H + I Q +E + ++E +Q+ + E L E+ Y E + G V Sbjct: 207 DEAVH-GYYIGYKFQRALE---VLSEEKRQEIKDFAFELLLELYDNEVRYT-EALYDG-V 260 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 GL ++++ + AN+ +G E LF Sbjct: 261 GL-TEDVKKFLHYNANKALMNLGYEALF 287 >gi|238759171|ref|ZP_04620339.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae ATCC 35236] gi|238702587|gb|EEP95136.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae ATCC 35236] Length = 323 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/272 (20%), Positives = 115/272 (42%), Gaps = 27/272 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P ++P+ +D+ W + LT +E+ + R +++ A+ + Sbjct: 31 TSNFWLPEKIPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAI 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQ 167 P +F EAVH+ ++ I ++L + D + + E + KA+ LQ+ Sbjct: 88 TPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQHYH 147 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D ++ + +F+ E FY+GF + K+ A+ + I Sbjct: 148 N----------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 192 Query: 228 MRDESLHLNF-GIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 +RDE++H + G + K++N E + + +L + E+ Y + K V Sbjct: 193 IRDEAVHGYYIGYKFQKGLEKVDNAR--RLEIKNFAFDLLQDLYDNEVRYTEDLYDK--V 248 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 G ++++ + AN+ +G E LF ++ Sbjct: 249 GW-TEDVKKFLHYNANKALMNLGYEALFPISQ 279 >gi|294853320|ref|ZP_06793992.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026] gi|294818975|gb|EFG35975.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026] Length = 329 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/267 (20%), Positives = 105/267 (39%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W++ L E+ + R +++ + + Sbjct: 37 TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L L P + W+ + Sbjct: 94 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + AD + + V E FY+GF + K+ A+ + I+R Sbjct: 143 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 200 Query: 230 DESLH---LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 DE++H + + ++ E K+F + +L E E+ Y E + G VG Sbjct: 201 DEAVHGYYIGYKFQRALEVLFEEKRQEIKDF---AFELLLELYDNEVRYT-EALYDG-VG 255 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 L ++++ + AN+ +G E LF Sbjct: 256 LT-EDVKKFLHYNANKALMNLGYEALF 281 >gi|82545243|ref|YP_409190.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii Sb227] gi|81246654|gb|ABB67362.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Shigella boydii Sb227] gi|320186462|gb|EFW61190.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri CDC 796-83] gi|332091953|gb|EGI97031.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella boydii 3594-74] Length = 304 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 105/265 (39%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ + Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPYAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y+ E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYSDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|327189837|gb|EGE56975.1| ribonucleoside-diphosphate reductase protein, beta subunit [Rhizobium etli CNPAF512] Length = 324 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 61/268 (22%), Positives = 113/268 (42%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ + + Sbjct: 32 TGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGAIRLMEDAM 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L ++ + YR ++ N LQ L Sbjct: 89 TPHEEAVLSNVSFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSAL 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + +G + V V E FY+GF + K+ A+ + I+R Sbjct: 143 IMEQYGSGDPLKKK-------VASVFLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIR 195 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFV 285 DE++H + I Q +E ++E +Q+ + + LLE+ A E + G V Sbjct: 196 DEAVH-GYYIGYKFQRGLER---LSEERRQEIKDFAFD-LLLELYDNEARYTEALYDG-V 249 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 GL ++++ + AN+ +G E LF Sbjct: 250 GLT-EDVKKFLHYNANKALMNLGYEALF 276 >gi|312869696|ref|ZP_07729843.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus oris PB013-T2-3] gi|311094745|gb|EFQ53042.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus oris PB013-T2-3] Length = 339 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 62/281 (22%), Positives = 119/281 (42%), Gaps = 32/281 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +D+ W++ L +D + + G +++ + + Sbjct: 28 TWEK---LTEQFWLDTRIPVSNDMDDWRN---LDEDHQWTVGHVFGGLTLLDTVQSEAGL 81 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159 A+ + L F E+VH+ ++ I ++L + E+FN + Sbjct: 82 TALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIDEIFNW--------SDT 133 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 LQ T + + +D ++ + ++F+ E FY+GF L N++ Sbjct: 134 EEYLQNKATKIANMYLNPAEDPLKKKVANVFL-----ETFLFYSGFYTPLYYLGHNELNN 188 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAY 275 +AE + I+RDES+H + I Q+ + H T++ QQ + L+E E Y Sbjct: 189 VAEIIKLILRDESVHGTY-IGYKFQVGL---HERTEKQQQDMKDWLYNFLYELYDNEEKY 244 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 H K +G ++++ AN+ +G +PLF T Sbjct: 245 THLLYDK--IGW-TDDVLTFIRYNANKALMNLGQDPLFPDT 282 >gi|258423381|ref|ZP_05686272.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9635] gi|257846442|gb|EEV70465.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9635] Length = 323 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 67/296 (22%), Positives = 127/296 (42%), Gaps = 22/296 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ L++ E+ K+ L ++ A++ + + H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMY-REVPSITAKANWALQYTQTLS 170 + A E +H+ ++ +I T+L + L +++ E P + K++ + L Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDVWVLEEPHLKYKSDKIVANYHKLW 141 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + DQ + V V E F++GF L L KM E + I+ D Sbjct: 142 GKEASI----YDQYMAR---VTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLD 194 Query: 231 ESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 ES+H F G+D ++ E ++ Q+ +L++ L E +Y M +G+ Sbjct: 195 ESIHGVFTGLDA-QHLRNELSESEKQKADQEMYKLLNDLYLNEESYT--KMLYDDLGI-T 250 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTEY 343 Y+++ N+ +G EP F+ E F P + +D K +FF + Y Sbjct: 251 EDVLNYVKYNGNKALSNLGFEPYFE--EREFNPIIENALDTTTKNHDFFSVKGDGY 304 >gi|227496669|ref|ZP_03926945.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces urogenitalis DSM 15434] gi|226833817|gb|EEH66200.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces urogenitalis DSM 15434] Length = 324 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 61/285 (21%), Positives = 117/285 (41%), Gaps = 28/285 (9%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+L+ K W++ N W+P +VP+ +D+ W + L + E+ M R Sbjct: 17 NRLVDDKDLEVWDRL---TGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGLTL 70 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMY 149 +++ +++ P AF E+VH+ ++ I ++L + E F Sbjct: 71 LDTIQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHARSYSSIFSTLISTAEIDEAFRWS 130 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E ++ KA L Y + D E + V + E FY+GF + Sbjct: 131 EENENLQRKAKIILDY------------YRGDDPEKRK---VASTMLESFLFYSGFYAPM 175 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEA 268 K+ A+ + I+RDE++H + I Q+ + E+ E + + +L E Sbjct: 176 YWSSHAKLTNTADLIRLIIRDEAVH-GYYIGYKYQLAVRESSPQRQAELKDYTFDLLMEL 234 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E Y + + +GL ++++++ AN+ +G E LF Sbjct: 235 YDNEEQYTEDLYDE--LGLTE-DVKKFLRYNANKALMNLGYEALF 276 >gi|9629310|ref|NP_044510.1| ribonucleotide reductase subunit 2 [Human herpesvirus 2] gi|61231410|sp|P69520|RIR2_HHV23 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|61231418|sp|P69521|RIR2_HHV2H RecName: Full=Ribonucleoside-diphosphate reductase small chain; Short=R2; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|330200|gb|AAA45807.1| 38K protein [Human herpesvirus 2] gi|1869863|emb|CAB06726.1| ribonucleotide reductase small subunit [Human herpesvirus 2] gi|224613173|dbj|BAH24264.1| ribonucleotide reductase small subunit [Human herpesvirus 2] gi|224613175|dbj|BAH24265.1| ribonucleotide reductase small subunit [Human herpesvirus 2] Length = 337 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 66/301 (21%), Positives = 117/301 (38%), Gaps = 33/301 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 53 NRWLETELVFVGD---EEDVSKLSEGELGFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 108 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREV--PSITAKANWALQYTQ 167 + Y + Q E VHS + I L D+ + R + P+I K +W Sbjct: 109 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTINHPAIRVKVDW------ 162 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 ++ D + + F+ ++ EG++F FA I L N + + I Sbjct: 163 ------LEARVRECDS--IPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLI 214 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETMPKGFV 285 RDE++H I N +L + +R + EA +EI + P Sbjct: 215 SRDEAVH------TTASCYIYNNYLGGHAKPEAARVYRLFREAVDIEIGFIRSQAPTDSS 268 Query: 286 GLNA---PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 L+ + E Y++F A+R I ++PL+ + ++ K NFFE R T Sbjct: 269 ILSPGALAAIENYVRFSADRLLGLIHMQPLYSAPAPDASFPLSLMSTDKHTNFFECRSTS 328 Query: 343 Y 343 Y Sbjct: 329 Y 329 >gi|323159821|gb|EFZ45793.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli E128010] Length = 319 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 104/265 (39%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K++ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLINTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|170684037|ref|YP_001744827.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli SMS-3-5] gi|170521755|gb|ACB19933.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli SMS-3-5] Length = 319 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 105/265 (39%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q K+E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKKLEKISLAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 + + ++ + AN+ +G EPLF Sbjct: 247 SDDVKAFLCYNANKALMNLGYEPLF 271 >gi|329729655|gb|EGG66056.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 21193] Length = 323 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 32/301 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ L++ E+ K+ L ++ A++ + + H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LSETEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLG--------LDEGELFNMYREVPSITAKANWALQY 165 + A E +H+ ++ +I T+L LDE L E P + K++ + Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVL-----EEPHLKYKSDKIVAN 136 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 L + DQ + V V E F++GF L L KM E + Sbjct: 137 YHKLWGKEASI----YDQYMAR---VTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIR 189 Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 I+ DES+H F G+D ++ E ++ Q+ +L++ L E +Y M Sbjct: 190 KILLDESIHGVFTGLDA-QHLRNELSESEKQKADQEMYKLLNDLYLNEESYT--KMLYDD 246 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTE 342 +G+ Y+++ N+ +G EP F+ E F P + +D K +FF + Sbjct: 247 LGI-TEDVLNYVKYNGNKALSNLGFEPYFE--EREFNPIIENALDTTTKNHDFFSVKGDG 303 Query: 343 Y 343 Y Sbjct: 304 Y 304 >gi|239833484|ref|ZP_04681812.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum intermedium LMG 3301] gi|239821547|gb|EEQ93116.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum intermedium LMG 3301] Length = 328 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 60/270 (22%), Positives = 112/270 (41%), Gaps = 31/270 (11%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W++ L +E+ + R +++ + + Sbjct: 36 TGNFWLPEKVPLSNDIQSWET---LKREEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAV 92 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA-----LQ 164 P L +F EAVH+ ++ I ++L L P + W+ LQ Sbjct: 93 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 141 Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 L + G D ++ + +F+ E FY+GF + K+ A+ Sbjct: 142 RKSVLILDQYHAG--DPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLI 194 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKG 283 + I+RDE++H + I Q +E + K E + + +L E E+ Y E + G Sbjct: 195 RLIIRDEAVH-GYYIGYKFQRGLERLNGEQKQEIKDFAFELLLELYDNEVRYT-EALYDG 252 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VGL ++++ + AN+ +G E LF Sbjct: 253 -VGL-TEDVKKFLHYNANKALMNLGYEALF 280 >gi|206968243|ref|ZP_03229199.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH1134] gi|228951833|ref|ZP_04113931.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957726|ref|ZP_04119470.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pakistani str. T13001] gi|229069003|ref|ZP_04202296.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus F65185] gi|206737163|gb|EDZ54310.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH1134] gi|228714115|gb|EEL65997.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus F65185] gi|228801969|gb|EEM48842.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807756|gb|EEM54277.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 193 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 12/178 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 P T ++ L V V E FY+GF L L K+ E I+R Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIR 193 >gi|319440834|ref|ZP_07989990.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium variabile DSM 44702] Length = 316 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/274 (19%), Positives = 111/274 (40%), Gaps = 31/274 (11%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P ++P+ +D+ W++ + + + + L + + +S + ++ R Sbjct: 24 TSNFWLPEKIPLSNDVQSWRTLSEVEQATTMRVFAGLTYLDTIQSAIGAPVLA---RDAV 80 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P F E+VH+ ++ I +L + F E P++ K + + Sbjct: 81 TPHEEAVFANIHFMESVHARSYSSIFQTLATTPQINDAFRWVEEDPNMIYKRDRVI---- 136 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 SF G ++ V+ E FY+GF L +K+ A+ + I Sbjct: 137 -----SFYEGDDPLRRKAAS------VILETFLFYSGFYLPLKWASHSKLTNTADIIRLI 185 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKG 283 +RDE +H + I Q+ + W+ QQ + + + L E AY + Sbjct: 186 IRDEVVH-GYYIGYKYQVGMAG---WSSAEQQAIKDEVFDLLLDLYDNECAYTETLYDE- 240 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +G ++++++ AN+ + +G E +F E Sbjct: 241 -LGWTE-DVKRFLRYNANKALNNLGYEGVFPQDE 272 >gi|331658787|ref|ZP_08359729.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA206] gi|315298701|gb|EFU57955.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 16-3] gi|331053369|gb|EGI25398.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA206] Length = 319 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ +L Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIGAPSLLP---DTL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFASRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISLAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|311064961|ref|YP_003971687.1| ribonucleoside-diphosphate reductase subunit beta NrdF [Bifidobacterium bifidum PRL2010] gi|310867281|gb|ADP36650.1| NrdF Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium bifidum PRL2010] Length = 330 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 52/273 (19%), Positives = 106/273 (38%), Gaps = 37/273 (13%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ ++DDE + +++ +++ Sbjct: 38 TGNFWLPEKVPVSNDIPSWQK---MSDDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I ++L + F+ + KA L Y + Sbjct: 95 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDTAFDWSERNEFLQKKAEIVLDYYE 154 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 S + + E FY+GF + K+ A+ + I Sbjct: 155 GDSPLKRKVAS---------------TLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLI 199 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G++ ++ K E E ++ + +L+E E+ Y Sbjct: 200 IRDEAVHGYYIGYKYQRGLERVSDAKRE-------EMREYTYNLLNELYDNEVEYTESLY 252 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + VGL E+++++ N+ +G LF Sbjct: 253 ER--VGL-TDDVEKFLRYNGNKALMNLGYPALF 282 >gi|282916074|ref|ZP_06323837.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus D139] gi|283769895|ref|ZP_06342787.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus H19] gi|282320022|gb|EFB50369.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus D139] gi|283460042|gb|EFC07132.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus H19] Length = 323 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 32/301 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ L++ E+ K+ L ++ A++ + + H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLG--------LDEGELFNMYREVPSITAKANWALQY 165 + A E +H+ ++ +I T+L LDE L E P + K++ + Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVL-----EEPHLKYKSDKIVAN 136 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 L + DQ + V V E F++GF L L KM E + Sbjct: 137 YHKLWGKEASI----YDQYMAR---VTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIR 189 Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 I+ DES+H F G+D ++ E ++ Q+ +L++ L E +Y M Sbjct: 190 KILLDESIHGVFTGLDA-QHLRNELSESEKQKADQEMYKLLNDLYLNEESYT--KMLYDD 246 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTE 342 +G+ Y+++ N+ +G EP F+ E F P + +D K +FF + Sbjct: 247 LGI-TEDVLNYVKYNGNKALSNLGFEPYFE--EREFNPIIENALDTTTKNHDFFSVKGDG 303 Query: 343 Y 343 Y Sbjct: 304 Y 304 >gi|10957415|ref|NP_051641.1| ribonucleotide-diphosphate reductase subunit beta [Deinococcus radiodurans R1] gi|6460844|gb|AAF12548.1|AE001826_17 ribonucleoside-diphosphate reductase, beta chain [Deinococcus radiodurans R1] Length = 354 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 55/240 (22%), Positives = 98/240 (40%), Gaps = 40/240 (16%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWA--WEK---------YLSACNNHWMPTEVPMQD 63 + VN+ R+ + +N +P+ A W + Y + W P E+P+ + Sbjct: 2 RGVNIQPDRVFGSPQPINNEVPMTPFSAANWSEPEDNFSATFYAKYTSQLWFPEEIPLTN 61 Query: 64 DLALWKSKNGLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR-QA 121 D WK+ L+D+ER I + G ++ + + + R L + R+ L+ Q Sbjct: 62 DALAWKT---LSDEERWTYIHASAGL--NALDTLQGEVGMPRLRDLVDGHIRKATLQFQG 116 Query: 122 FEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E +H+ ++ + + +E E+F R P + K + Q + + Sbjct: 117 MMEDIHARSYSLMNKTFLTASEEREVFEWVRTQPQLQHK----IAVIQGV--------YR 164 Query: 180 DADQEFLQDL-----FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 D D + DL V + E FY+GF L L +MV E + I+ DE+LH Sbjct: 165 DPD---VSDLGVWKKLVVSCMLETALFYSGFFYPLYLAGQGQMVSAGEIFNLIILDEALH 221 >gi|59912|emb|CAA24930.1| unnamed protein product [Human herpesvirus 2] Length = 337 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 66/301 (21%), Positives = 117/301 (38%), Gaps = 33/301 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 53 NRWLETELVFVGD---EEDVSKLSEGELGFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 108 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREV--PSITAKANWALQYTQ 167 + Y + Q E VHS + I L D+ + R + P+I K +W Sbjct: 109 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTINHPAIRVKVDW------ 162 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 ++ D + + F+ ++ EG++F FA I L N + + I Sbjct: 163 ------LEARVRECDS--VPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLI 214 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETMPKGFV 285 RDE++H I N +L + +R + EA +EI + P Sbjct: 215 SRDEAVH------TTASCYIYNNYLGDHAKPEAARVYRLFREAVDIEIGFIRSQAPTDSS 268 Query: 286 GLNA---PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 L+ + E Y++F A+R I ++PL+ + ++ K NFFE R T Sbjct: 269 ILSPGALAAIENYVRFSADRLLGLIHMQPLYSAPAPDASFPLSLMSTDKHTNFFECRSTS 328 Query: 343 Y 343 Y Sbjct: 329 Y 329 >gi|323941488|gb|EGB37671.1| ribonucleotide reductase [Escherichia coli E482] Length = 319 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 104/265 (39%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ +W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPVWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|256848140|ref|ZP_05553584.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus coleohominis 101-4-CHN] gi|256715200|gb|EEU30177.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus coleohominis 101-4-CHN] Length = 333 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 71/312 (22%), Positives = 121/312 (38%), Gaps = 30/312 (9%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L D + + G ++L + + Sbjct: 22 TWEK---LTEQFWLDTRIPVSNDLDDWRE---LDTDHQWTVGHVFGGLTLLDTLQSQAGL 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 A+ + L F E+VH+ ++ I ++L + E+ ++ S N Sbjct: 76 TALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPD-EIREIFDWSDSEEYLQNK 134 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 A++ S K FL E FY+GF L NK+ +A Sbjct: 135 AVKIGNIYLDESVDPLKKKVANVFL----------ETFLFYSGFYTPLYYLGHNKLNNVA 184 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM---LHEATLLEIAYAHE 278 E + I+RDES+H G + + ++ L K+ Q M L+E E Y H Sbjct: 185 EIIKLILRDESVH---GTYIGYKFQVGMRQLTEKQQQDMKDWMYNFLYELYDNEGNYTHL 241 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNF 335 + +G ++++ AN+ +G +PLF T NP M+ + +F Sbjct: 242 LYDQ--IGW-TDDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MNGISTTTSNHDF 297 Query: 336 FETRVTEYQQGA 347 F Y+ GA Sbjct: 298 FSQVGNGYRLGA 309 >gi|184156148|ref|YP_001844488.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum IFO 3956] gi|227515317|ref|ZP_03945366.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|260662379|ref|ZP_05863274.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|183227492|dbj|BAG28008.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum IFO 3956] gi|227086331|gb|EEI21643.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|260553070|gb|EEX26013.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|299783625|gb|ADJ41623.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum CECT 5716] Length = 316 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 57/282 (20%), Positives = 118/282 (41%), Gaps = 36/282 (12%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + W+K A W+ T VP+ +D W++ LTD E+ +I + +G A ++L + Sbjct: 18 YVWDK---ATAQFWLDTRVPVSNDRGDWRT---LTDSEKGVINKVVGGLALLDTLQSEEG 71 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 V + + + E++H+ ++ I+++L + +I + Sbjct: 72 VNVMREDARTRKEVGVINDFLMMESIHAKSYGTILSTLN-----------DQKTIDDTFH 120 Query: 161 WA-----LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 W +QY + + G + V V EG+ +Y+ F L N Sbjct: 121 WMNNDPRMQYKVRRINEIYQNGNNLEKK-------VASVFLEGILYYSNFFTPLWYRGNN 173 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE--ATLLEI 273 K+ ++E + ++RDES+H + Q E T + Q + R + + A LLE Sbjct: 174 KLANLSEVIKLVIRDESVHGTYLGYKFQQAFAE----LTPDEQTRFRAWMDDLLADLLEN 229 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +A + + + +Q++++ AN+ + +G +F + Sbjct: 230 EFAFTEVVYAPIQM-VEDVKQFVRYNANKAMNNMGFAAIFNH 270 >gi|15923722|ref|NP_371256.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus Mu50] gi|15926409|ref|NP_373942.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus N315] gi|21282423|ref|NP_645511.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MW2] gi|49482989|ref|YP_040213.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MRSA252] gi|49485604|ref|YP_042825.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MSSA476] gi|57651569|ref|YP_185668.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus COL] gi|82750436|ref|YP_416177.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus RF122] gi|87162072|ref|YP_493420.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194508|ref|YP_499303.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267192|ref|YP_001246135.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus JH9] gi|150393241|ref|YP_001315916.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus JH1] gi|151220913|ref|YP_001331735.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus str. Newman] gi|156979060|ref|YP_001441319.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus Mu3] gi|161508997|ref|YP_001574656.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141144|ref|ZP_03565637.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315835|ref|ZP_04839048.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731358|ref|ZP_04865523.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732821|ref|ZP_04866986.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH130] gi|255005523|ref|ZP_05144124.2| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424852|ref|ZP_05601279.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257427520|ref|ZP_05603919.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257430151|ref|ZP_05606535.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus 68-397] gi|257432852|ref|ZP_05609212.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus E1410] gi|257435756|ref|ZP_05611804.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus M876] gi|257794947|ref|ZP_05643926.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9781] gi|258418263|ref|ZP_05682528.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A9763] gi|258421560|ref|ZP_05684485.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9719] gi|258430755|ref|ZP_05688467.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A9299] gi|258441753|ref|ZP_05691025.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A8115] gi|258445806|ref|ZP_05693983.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A6300] gi|258449617|ref|ZP_05697719.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A6224] gi|258452940|ref|ZP_05700934.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A5948] gi|258454017|ref|ZP_05701989.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A5937] gi|262049516|ref|ZP_06022386.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus aureus D30] gi|262052319|ref|ZP_06024522.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus aureus 930918-3] gi|269202352|ref|YP_003281621.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ED98] gi|282894500|ref|ZP_06302729.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A8117] gi|282903362|ref|ZP_06311253.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C160] gi|282905140|ref|ZP_06312998.1| ribonucleoside-diphosphate reductase beta subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282908118|ref|ZP_06315949.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910377|ref|ZP_06318181.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282913572|ref|ZP_06321361.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus M899] gi|282918525|ref|ZP_06326262.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C427] gi|282922028|ref|ZP_06329725.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9765] gi|282923491|ref|ZP_06331171.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C101] gi|282926597|ref|ZP_06334227.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A10102] gi|283957564|ref|ZP_06375017.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|284023753|ref|ZP_06378151.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus 132] gi|293500617|ref|ZP_06666468.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293509565|ref|ZP_06668276.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus M809] gi|293524151|ref|ZP_06670838.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus M1015] gi|294849402|ref|ZP_06790145.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754] gi|295406453|ref|ZP_06816259.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819] gi|295427309|ref|ZP_06819944.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275141|ref|ZP_06857648.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MR1] gi|297208541|ref|ZP_06924970.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245179|ref|ZP_06929053.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796] gi|297590338|ref|ZP_06948977.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MN8] gi|300912633|ref|ZP_07130076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH70] gi|304381650|ref|ZP_07364299.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|4490610|emb|CAB38643.1| ribonucleotide reductase minor subunit [Staphylococcus aureus] gi|13700623|dbj|BAB41920.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus aureus subsp. aureus N315] gi|14246501|dbj|BAB56894.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus aureus subsp. aureus Mu50] gi|14329710|emb|CAC40668.1| ribonucleotide-diphosphate reductase beta chain [Staphylococcus aureus] gi|21203860|dbj|BAB94559.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus aureus subsp. aureus MW2] gi|49241118|emb|CAG39796.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus aureus subsp. aureus MRSA252] gi|49244047|emb|CAG42473.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus aureus subsp. aureus MSSA476] gi|57285755|gb|AAW37849.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus COL] gi|82655967|emb|CAI80371.1| ribonucelotide diphosphate reductase beta chain [Staphylococcus aureus RF122] gi|87128046|gb|ABD22560.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202066|gb|ABD29876.1| ribonucleotide-disphosphate reductase beta chain, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740261|gb|ABQ48559.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Staphylococcus aureus subsp. aureus JH9] gi|149945693|gb|ABR51629.1| Ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus JH1] gi|150373713|dbj|BAF66973.1| ribonucleotide-diphosphate reductase beta chain [Staphylococcus aureus subsp. aureus str. Newman] gi|156721195|dbj|BAF77612.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus aureus subsp. aureus Mu3] gi|160367806|gb|ABX28777.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724883|gb|EES93612.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729186|gb|EES97915.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH130] gi|257272422|gb|EEV04545.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257275713|gb|EEV07186.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257279348|gb|EEV09949.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus 68-397] gi|257282267|gb|EEV12402.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus E1410] gi|257284947|gb|EEV15066.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus M876] gi|257788919|gb|EEV27259.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9781] gi|257839056|gb|EEV63535.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A9763] gi|257842486|gb|EEV66910.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9719] gi|257849427|gb|EEV73397.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A9299] gi|257852222|gb|EEV76149.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A8115] gi|257855382|gb|EEV78320.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A6300] gi|257857125|gb|EEV80024.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A6224] gi|257859451|gb|EEV82305.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A5948] gi|257863882|gb|EEV86638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A5937] gi|259159759|gb|EEW44800.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus aureus 930918-3] gi|259162352|gb|EEW46924.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus aureus D30] gi|262074642|gb|ACY10615.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ED98] gi|269940309|emb|CBI48686.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus aureus subsp. aureus TW20] gi|282314359|gb|EFB44749.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C101] gi|282317659|gb|EFB48031.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C427] gi|282322604|gb|EFB52926.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus M899] gi|282325769|gb|EFB56077.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282327783|gb|EFB58065.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331965|gb|EFB61476.1| ribonucleoside-diphosphate reductase beta subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282591490|gb|EFB96562.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A10102] gi|282593686|gb|EFB98678.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9765] gi|282596317|gb|EFC01278.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C160] gi|282763213|gb|EFC03344.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A8117] gi|283470026|emb|CAQ49237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus ST398] gi|283791015|gb|EFC29830.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|285816434|gb|ADC36921.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus aureus 04-02981] gi|290921114|gb|EFD98175.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus M1015] gi|291095622|gb|EFE25883.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291467662|gb|EFF10177.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus M809] gi|294823934|gb|EFG40360.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754] gi|294968598|gb|EFG44621.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819] gi|295128697|gb|EFG58328.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886796|gb|EFH25700.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177850|gb|EFH37099.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796] gi|297576637|gb|EFH95352.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MN8] gi|298694063|gb|ADI97285.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus ED133] gi|300886879|gb|EFK82081.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH70] gi|302332442|gb|ADL22635.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus JKD6159] gi|302750629|gb|ADL64806.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339753|gb|EFM05698.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438843|gb|ADQ77914.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH60] gi|312829224|emb|CBX34066.1| ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129414|gb|EFT85407.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus CGS03] gi|315194351|gb|EFU24743.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus CGS00] gi|315196404|gb|EFU26755.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus CGS01] gi|320139937|gb|EFW31798.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320141974|gb|EFW33802.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus MRSA177] gi|323438919|gb|EGA96654.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus O11] gi|323441867|gb|EGA99507.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus O46] gi|329313453|gb|AEB87866.1| Ribonucleoside-diphosphate reductase class Ib beta subunit [Staphylococcus aureus subsp. aureus T0131] gi|329724628|gb|EGG61135.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 21172] gi|329728537|gb|EGG64970.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 21189] Length = 323 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 32/301 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+A WK+ L++ E+ K+ L ++ A++ + + H ++ Sbjct: 25 WVETEFKVSKDIASWKT---LSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRK 81 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLG--------LDEGELFNMYREVPSITAKANWALQY 165 + A E +H+ ++ +I T+L LDE L E P + K++ + Sbjct: 82 KAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVL-----EEPHLKYKSDKIVAN 136 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 L + DQ + V V E F++GF L L KM E + Sbjct: 137 YHKLWGKEASI----YDQYMAR---VTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIR 189 Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 I+ DES+H F G+D ++ E ++ Q+ +L++ L E +Y M Sbjct: 190 KILLDESIHGVFTGLDA-QHLRNELSESEKQKADQEMYKLLNDLYLNEESYT--KMLYDD 246 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID-LKKEKNFFETRVTE 342 +G+ Y+++ N+ +G EP F+ E F P + +D K +FF + Sbjct: 247 LGI-TEDVLNYVKYNGNKALSNLGFEPYFE--EREFNPIIENALDTTTKNHDFFSVKGDG 303 Query: 343 Y 343 Y Sbjct: 304 Y 304 >gi|321496611|ref|YP_004207896.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru] gi|320332513|gb|ADW24401.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru] gi|320332596|gb|ADW24483.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru] Length = 307 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 67/309 (21%), Positives = 115/309 (37%), Gaps = 46/309 (14%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI---VLAIYRHL 108 N W P ++P+ D K L++ ++ K F +E LV NI ++ I+ H Sbjct: 28 NRWFPYQIPLAVDA---KDVTKLSETDKEFYKFLFIFLGLAEKLVNFNIDELLVGIHSH- 83 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQ 164 + + Y Q E +H + I+ + Y P + AK +W Sbjct: 84 ---DAKHYYDEQEAMENIHGKVYANILNLFFEGDKAKMRQYAHFVVGNPGLKAKLSWLHD 140 Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 + ++ + + + VF ++ EG++F + F I L G+ Sbjct: 141 KVREATTIA-------------EKVLVFLLI-EGIFFVSSFYSIGLLRVRGICNGVCLAN 186 Query: 225 QYIMRDESLHLNFGIDVINQIKIEN---PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 YI RDE LH + N + + P W + EA +EI + E Sbjct: 187 DYISRDELLHTRAAALLYNTLVDPDRKPPVHWI-------HNLFREAVDVEIRFIRER-G 238 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFET 338 +G +N +++ A+R QI L L+ + P + + V K NFFE Sbjct: 239 RGVTAVNIEDIISFLKATADRMLTQIKLPILYGELAPSGCPLAFNACV----KNINFFER 294 Query: 339 RVTEYQQGA 347 T+Y Sbjct: 295 EGTDYSSSV 303 >gi|218663032|ref|ZP_03518962.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli IE4771] Length = 324 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 61/268 (22%), Positives = 117/268 (43%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ + + Sbjct: 32 TGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGSIRLMEDAV 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L ++ + YR ++ N LQ L Sbjct: 89 TPHEEAVLSNVSFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSVL 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + G+ D ++ + +F+ E FY+GF + K+ A+ + I+R Sbjct: 143 IMEQY--GSGDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIR 195 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFV 285 DE++H + I Q +E ++E +Q+ + + LLE+ A E + G V Sbjct: 196 DEAVH-GYYIGYKFQRGLER---LSEERRQEIKDFAFD-LLLELYDNEARYTEALYDG-V 249 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 GL ++++ + AN+ +G E LF Sbjct: 250 GLT-EDVKKFLHYNANKALMNLGYEALF 276 >gi|70606887|ref|YP_255757.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus acidocaldarius DSM 639] gi|68567535|gb|AAY80464.1| hypothetical protein Saci_1112 [Sulfolobus acidocaldarius DSM 639] Length = 308 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/195 (22%), Positives = 86/195 (44%), Gaps = 12/195 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P+ + + D A W + L D ++ ++ F + E VA ++ I + Sbjct: 39 WDPSTIDLTQDRADW---DKLRDIDKFLMVNVTSKFGAGEEAVALDLHPLIVTLVKEGRV 95 Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 + YL + FEEA H F+ + ++G+ E +L + ++V N+A + + L Sbjct: 96 EEVMYLEQFIFEEAKHVEAFRRFLDAVGVKE-DLVELTKDV-----SPNYAKIFYEELPK 149 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRD 230 + + + ++ + +V EG+ G+ + R N G+A+ YI D Sbjct: 150 AMWNLNRDPSPENQVRAAVTYNLVVEGVAAEGGYNIFKYITRTFNIFPGLAKMVNYIATD 209 Query: 231 ESLHLNFGIDVINQI 245 ES H+ FG +I ++ Sbjct: 210 ESRHIAFGTYLIARL 224 >gi|209762238|gb|ACI79431.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|320646030|gb|EFX15007.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H- str. 493-89] gi|320651330|gb|EFX19761.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H- str. H 2687] Length = 319 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 104/265 (39%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I +Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKHQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|18158911|pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form gi|18158912|pdb|1KGN|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form gi|18158913|pdb|1KGN|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form gi|18158914|pdb|1KGN|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form gi|18158915|pdb|1KGO|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe Containing, Form gi|18158916|pdb|1KGO|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe Containing, Form gi|18158917|pdb|1KGO|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe Containing, Form gi|18158918|pdb|1KGO|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe Containing, Form gi|18158919|pdb|1KGP|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Mn Substituted Form gi|18158920|pdb|1KGP|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Mn Substituted Form gi|18158921|pdb|1KGP|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Mn Substituted Form gi|18158922|pdb|1KGP|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Mn Substituted Form gi|48425146|pdb|1OQU|A Chain A, A Protein Coordinated Tri-Nuclear Fe Complex Formed During Soaking Of Crystals Of The Ribonucleotide Reductase R2f Protein From Corynebacterium Ammoniagenes gi|48425147|pdb|1OQU|B Chain B, A Protein Coordinated Tri-Nuclear Fe Complex Formed During Soaking Of Crystals Of The Ribonucleotide Reductase R2f Protein From Corynebacterium Ammoniagenes gi|48425148|pdb|1OQU|C Chain C, A Protein Coordinated Tri-Nuclear Fe Complex Formed During Soaking Of Crystals Of The Ribonucleotide Reductase R2f Protein From Corynebacterium Ammoniagenes gi|48425149|pdb|1OQU|D Chain D, A Protein Coordinated Tri-Nuclear Fe Complex Formed During Soaking Of Crystals Of The Ribonucleotide Reductase R2f Protein From Corynebacterium Ammoniagenes gi|193506844|pdb|3DHZ|A Chain A, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein gi|193506845|pdb|3DHZ|B Chain B, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein gi|3077614|emb|CAA70766.1| ribonucleotide reductase subunit R2F [Corynebacterium ammoniagenes] Length = 329 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 51/275 (18%), Positives = 106/275 (38%), Gaps = 33/275 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W N +T E+L R +++ +++ Sbjct: 37 TGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAE 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 AF E+VH+ ++ I +L P I W+ + Sbjct: 94 TMHEEAVYTNIAFMESVHAKSYSNIFMTLA-----------STPQINEAFRWSEENENLQ 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + V + E FY+GF + L K+ A+ + I+R Sbjct: 143 RKAKIIMSYYNGDDPLKKK--VASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIR 200 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DES+H + G+ +++ + E E++ + ++++ EI Y + Sbjct: 201 DESVHGYYIGYKYQQGVKKLSEAEQE-------EYKAYTFDLMYDLYENEIEYTEDIYDD 253 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +G ++++++ AN+ + +G E LF E Sbjct: 254 --LGW-TEDVKRFLRYNANKALNNLGYEGLFPTDE 285 >gi|213962351|ref|ZP_03390614.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga sputigena Capno] gi|213955017|gb|EEB66336.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga sputigena Capno] Length = 319 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 71/315 (22%), Positives = 122/315 (38%), Gaps = 23/315 (7%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y E + + W+ +EV D+ +KS L+ E+ +KR L A E Sbjct: 12 PFEYPEVMEFVNAMHKSFWVHSEVEFTADIQDFKS--NLSTVEQEAVKRALLGIAQVEVS 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +Y PE A E HS + ++ LG + F EVP Sbjct: 70 V-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLLEVPIF 126 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-A 214 + N +Y ++A ++ + F ++ E ++ FA ILS R Sbjct: 127 KERNNILKEY--------LAKNRENA----MERILFFTLIIENASLFSQFATILSFTRFK 174 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 + +A + DE LH N GI ++ +I E P + T + ++ + LLE Sbjct: 175 GYLKNVANIIAWTSIDEQLHANAGIYILKKIFEERPEMKTIA-EHEATNFIRNYILLEDK 233 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSEVIDLK 330 +G + + YM++ + Q+GL+ F + + P W E + Sbjct: 234 MLDWIFEQGELEFFSKKDLANYMRYRLDDSLTQLGLDKPFNISGDEAKPMMWFEEEVFSN 293 Query: 331 KEKNFFETRVTEYQQ 345 + +FF R T Y + Sbjct: 294 ELDDFFAKRPTAYTK 308 >gi|293412034|ref|ZP_06654757.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|291468805|gb|EFF11296.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] Length = 319 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ +L Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIGAPSLLP---DAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|218701171|ref|YP_002408800.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli IAI39] gi|218371157|emb|CAR18988.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli IAI39] Length = 319 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 104/265 (39%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLTNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISLAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|260869355|ref|YP_003235757.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O111:H- str. 11128] gi|257765711|dbj|BAI37206.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O111:H- str. 11128] gi|323180097|gb|EFZ65649.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 1180] Length = 319 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 105/265 (39%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y +E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTNELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|198241755|ref|YP_002216784.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197936271|gb|ACH73604.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624542|gb|EGE30887.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 319 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 62/276 (22%), Positives = 115/276 (41%), Gaps = 45/276 (16%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKA 159 P L +F EAVH+ ++ I ++L E+ Y E P + KA Sbjct: 85 --------PHEEAVLSNISFMEAVHARSYSSIFSTL-CQTKEVDVAYAWSEENPPLQRKA 135 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 L + + D+ + + V E FY+GF + K+ Sbjct: 136 QIILAHYVS-------------DEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTN 180 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 A+ + I+RDE++H + I QI ++ + +E + + +L E EI Y Sbjct: 181 TADLIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEICYTEA 239 Query: 279 TMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + G+V + ++ + AN+ +G E LF Sbjct: 240 LYAETGWVN----DVKAFLCYNANKALMNLGYEALF 271 >gi|256015100|ref|YP_003105109.1| ribonucleotide-diphosphate reductase beta subunit [Brucella microti CCM 4915] gi|255997760|gb|ACU49447.1| ribonucleotide-diphosphate reductase beta subunit [Brucella microti CCM 4915] Length = 329 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 55/271 (20%), Positives = 107/271 (39%), Gaps = 33/271 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W++ L E+ + R +++ + + Sbjct: 37 TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L L P + W+ + Sbjct: 94 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + AD + + V E FY+GF + K+ A+ + I+R Sbjct: 143 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 200 Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H ++V+++ K +E + + +L E E+ Y E + Sbjct: 201 DEAVHGYYIGHKFQRALEVLSEEK-------RQEIKDFAFELLLELYDNEVRYT-EALYD 252 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 G VGL ++++ + AN+ +G E LF Sbjct: 253 G-VGLT-EDVKKFLHYNANKALMNLGYEALF 281 >gi|23500072|ref|NP_699512.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis 1330] gi|62317763|ref|YP_223616.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 1 str. 9-941] gi|83269749|ref|YP_419040.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis biovar Abortus 2308] gi|148558197|ref|YP_001257348.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ovis ATCC 25840] gi|161620390|ref|YP_001594276.1| ribonucleotide-diphosphate reductase subunit beta [Brucella canis ATCC 23365] gi|189023015|ref|YP_001932756.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus S19] gi|254691263|ref|ZP_05154517.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 6 str. 870] gi|254695435|ref|ZP_05157263.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 3 str. Tulya] gi|254699051|ref|ZP_05160879.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|254699599|ref|ZP_05161427.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 5 str. 513] gi|254706144|ref|ZP_05167972.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M163/99/10] gi|254711557|ref|ZP_05173368.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis B2/94] gi|254712154|ref|ZP_05173965.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M644/93/1] gi|254715225|ref|ZP_05177036.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M13/05/1] gi|254720036|ref|ZP_05181847.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. 83/13] gi|254732497|ref|ZP_05191075.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 4 str. 292] gi|256029807|ref|ZP_05443421.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M292/94/1] gi|256059454|ref|ZP_05449656.1| ribonucleotide-diphosphate reductase subunit beta [Brucella neotomae 5K33] gi|256157977|ref|ZP_05455895.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M490/95/1] gi|256253064|ref|ZP_05458600.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti B1/94] gi|256256449|ref|ZP_05461985.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 9 str. C68] gi|260167086|ref|ZP_05753897.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. F5/99] gi|260544998|ref|ZP_05820819.1| ribonucleotide reductase [Brucella abortus NCTC 8038] gi|260568371|ref|ZP_05838840.1| ribonucleotide reductase [Brucella suis bv. 4 str. 40] gi|260756870|ref|ZP_05869218.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 6 str. 870] gi|260760301|ref|ZP_05872649.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 4 str. 292] gi|260763541|ref|ZP_05875873.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|260882684|ref|ZP_05894298.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 9 str. C68] gi|261215815|ref|ZP_05930096.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 3 str. Tulya] gi|261216944|ref|ZP_05931225.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M13/05/1] gi|261220160|ref|ZP_05934441.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti B1/94] gi|261313587|ref|ZP_05952784.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M163/99/10] gi|261319174|ref|ZP_05958371.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis B2/94] gi|261319814|ref|ZP_05959011.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M644/93/1] gi|261323425|ref|ZP_05962622.1| ribonucleotide-diphosphate reductase subunit beta [Brucella neotomae 5K33] gi|261750056|ref|ZP_05993765.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 5 str. 513] gi|261756480|ref|ZP_06000189.1| ribonucleotide reductase [Brucella sp. F5/99] gi|265985045|ref|ZP_06097780.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. 83/13] gi|265986823|ref|ZP_06099380.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M292/94/1] gi|265996493|ref|ZP_06109050.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M490/95/1] gi|297249809|ref|ZP_06933510.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella abortus bv. 5 str. B3196] gi|306839412|ref|ZP_07472226.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. NF 2653] gi|306845616|ref|ZP_07478185.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. BO1] gi|23463663|gb|AAN33517.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella suis 1330] gi|62197956|gb|AAX76255.1| NrdF, ribonucleoside-diphosphate reductase, beta subunit [Brucella abortus bv. 1 str. 9-941] gi|82940023|emb|CAJ13054.1| Ribonucleotide reductase [Brucella melitensis biovar Abortus 2308] gi|148369482|gb|ABQ62354.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella ovis ATCC 25840] gi|161337201|gb|ABX63505.1| Ribonucleoside-diphosphate reductase [Brucella canis ATCC 23365] gi|189021589|gb|ACD74310.1| Ribonucleotide reductase [Brucella abortus S19] gi|260098269|gb|EEW82143.1| ribonucleotide reductase [Brucella abortus NCTC 8038] gi|260155036|gb|EEW90117.1| ribonucleotide reductase [Brucella suis bv. 4 str. 40] gi|260670619|gb|EEX57559.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 4 str. 292] gi|260673962|gb|EEX60783.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|260676978|gb|EEX63799.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 6 str. 870] gi|260872212|gb|EEX79281.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 9 str. C68] gi|260917422|gb|EEX84283.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 3 str. Tulya] gi|260918744|gb|EEX85397.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti B1/94] gi|260922033|gb|EEX88601.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M13/05/1] gi|261292504|gb|EEX96000.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M644/93/1] gi|261298397|gb|EEY01894.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis B2/94] gi|261299405|gb|EEY02902.1| ribonucleotide-diphosphate reductase subunit beta [Brucella neotomae 5K33] gi|261302613|gb|EEY06110.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M163/99/10] gi|261736464|gb|EEY24460.1| ribonucleotide reductase [Brucella sp. F5/99] gi|261739809|gb|EEY27735.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 5 str. 513] gi|262550790|gb|EEZ06951.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M490/95/1] gi|264659020|gb|EEZ29281.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M292/94/1] gi|264663637|gb|EEZ33898.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. 83/13] gi|297173678|gb|EFH33042.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella abortus bv. 5 str. B3196] gi|306273937|gb|EFM55764.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. BO1] gi|306405535|gb|EFM61800.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. NF 2653] Length = 329 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W++ L E+ + R +++ + + Sbjct: 37 TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L L P + W+ + Sbjct: 94 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + AD + + V E FY+GF + K+ A+ + I+R Sbjct: 143 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 200 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285 DE++H + I Q +E + ++E +Q+ + E L E+ Y E + G V Sbjct: 201 DEAVH-GYYIGYKFQRALE---VLSEEKRQEIKDFAFELLLELYDNEVRYT-EALYDG-V 254 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 GL ++++ + AN+ +G E LF Sbjct: 255 GLT-EDVKKFLHYNANKALMNLGYEALF 281 >gi|261753311|ref|ZP_05997020.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 3 str. 686] gi|261743064|gb|EEY30990.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 3 str. 686] Length = 327 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W++ L E+ + R +++ + + Sbjct: 35 TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 91 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L L P + W+ + Sbjct: 92 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 140 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + AD + + V E FY+GF + K+ A+ + I+R Sbjct: 141 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 198 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285 DE++H + I Q +E + ++E +Q+ + E L E+ Y E + G V Sbjct: 199 DEAVH-GYYIGYKFQRALE---VLSEEKRQEIKDFAFELLLELYDNEVRYT-EALYDG-V 252 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 GL ++++ + AN+ +G E LF Sbjct: 253 GLT-EDVKKFLHYNANKALMNLGYEALF 279 >gi|200386806|ref|ZP_03213418.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603904|gb|EDZ02449.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 319 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 56/273 (20%), Positives = 111/273 (40%), Gaps = 39/273 (14%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P ++P+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKMPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 P L +F EAVH+ ++ I ++L + + A W+ Sbjct: 85 --------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAWS 125 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + +D+ + + V E FY+GF + K+ A+ Sbjct: 126 EENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTAD 183 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I+RDE++H + I QI ++ + +E + + +L E EI Y Sbjct: 184 LIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEICYTEALYA 242 Query: 282 K-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + G+V + ++ + AN+ +G E LF Sbjct: 243 ETGWVN----DVKAFLCYNANKALMNLGYEALF 271 >gi|323342959|ref|ZP_08083190.1| ribonucleotide-diphosphate reductase subunit beta [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463023|gb|EFY08218.1| ribonucleotide-diphosphate reductase subunit beta [Erysipelothrix rhusiopathiae ATCC 19414] Length = 358 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 66/288 (22%), Positives = 122/288 (42%), Gaps = 36/288 (12%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL---GFFASSESLVANNIVLAIYRHLSN 110 W P ++ +Q DL LW S L++D +L RNL F + + + +V H + Sbjct: 40 WRPEDISLQPDLNLWAS---LSEDVKLAYGRNLLVLTFLDTYQGDIGMPVVSRSIDHKYH 96 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYTQ 167 A E AVH+ ++ I + +E E+ ++YR + ++ + Y + Sbjct: 97 QRKSVLNFMAAMENAVHAKSYSNIFMTYMKNE-EIDDLYRWGEQNKNMQNILALIIGYYE 155 Query: 168 TLSSPSFTTGTKDADQ---EFLQDL-----FVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 L ++ D + +F D+ V V E FY+GF L K++ Sbjct: 156 NLDRLTYRKQYADLGEPVDDFEFDVAQWKAMVASVFLESCLFYSGFYYPLYFYGQGKLMQ 215 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE--ATLLEIAYAH 277 E I+RDES+H G+ I + +E ++F +++ L+E T L+ Y Sbjct: 216 AGEIINLILRDESIH---GL-YIGNLAME----LYRKFDAETQASLYEWLTTYLDAIYEE 267 Query: 278 ETMPKGFVGLNAP-----SCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319 E + + P + ++++ AN+ +G + ++Y E NP Sbjct: 268 EV--ELIEAIYDPVELSHDVKIFVRYNANKAMMNLGFDAYYEYEEVNP 313 >gi|254702722|ref|ZP_05164550.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 3 str. 686] Length = 335 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W++ L E+ + R +++ + + Sbjct: 43 TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 99 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L L P + W+ + Sbjct: 100 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + AD + + V E FY+GF + K+ A+ + I+R Sbjct: 149 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 206 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285 DE++H + I Q +E + ++E +Q+ + E L E+ Y E + G V Sbjct: 207 DEAVH-GYYIGYKFQRALE---VLSEEKRQEIKDFAFELLLELYDNEVRYT-EALYDG-V 260 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 GL ++++ + AN+ +G E LF Sbjct: 261 GLT-EDVKKFLHYNANKALMNLGYEALF 287 >gi|297243045|ref|ZP_06926983.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD] gi|296889256|gb|EFH27990.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD] Length = 364 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 22/186 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D+ W+S LTD ER R L +S++ + L H Sbjct: 74 NFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGLTLLDTSQATIGE---LCQIEHA 127 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF +++H+ ++ I ++L E E+ YR WA+ Sbjct: 128 RTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAYR----------WAVG--ND 174 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 + TT + + E + + + Y GF L KM+ A+ + I+ Sbjct: 175 VLQQRVTTVLCEYESEDPLKRKIAATMLSSLLLYAGFYLPLYFASRGKMMNTADMIRLIL 234 Query: 229 RDESLH 234 RD+++H Sbjct: 235 RDKAIH 240 >gi|306840845|ref|ZP_07473592.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. BO2] gi|306289240|gb|EFM60489.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. BO2] Length = 327 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W++ L E+ + R +++ + + Sbjct: 35 TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 91 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L L P + W+ + Sbjct: 92 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 140 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + AD + + V E FY+GF + K+ A+ + I+R Sbjct: 141 RKSTLILDQYHADNPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 198 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285 DE++H + I Q +E + ++E +Q+ + E L E+ Y E + G V Sbjct: 199 DEAVH-GYYIGYKFQRALE---VLSEEKRQEIKDFAFELLLELYDNEVRYT-EALYDG-V 252 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 GL ++++ + AN+ +G E LF Sbjct: 253 GLT-EDVKKFLHYNANKALMNLGYEALF 279 >gi|163844498|ref|YP_001622153.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis ATCC 23445] gi|163675221|gb|ABY39331.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 329 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W++ L E+ + R +++ + + Sbjct: 37 TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L L P + W+ + Sbjct: 94 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + AD + + V E FY+GF + K+ A+ + I+R Sbjct: 143 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 200 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPKGFV 285 DE++H + I Q +E + ++E +Q+ + E L E+ Y E + G V Sbjct: 201 DEAVH-GYYIGYKFQRALE---VLSEEKRQEIKDFAFELLLELYDNEVRYT-EALYDG-V 254 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 GL ++++ + AN+ +G E LF Sbjct: 255 GLT-EDVKKFLHYNANKALMNLGYEALF 281 >gi|283782686|ref|YP_003373440.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella vaginalis 409-05] gi|283441437|gb|ADB13903.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella vaginalis 409-05] Length = 359 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 22/186 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D+ W+S LTD ER R L +S++ + L H Sbjct: 69 NFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGLTLLDTSQATIGE---LCQIEHA 122 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF +++H+ ++ I ++L E E+ YR WA+ Sbjct: 123 RTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAYR----------WAVG--ND 169 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 + TT + + E + + + Y GF L KM+ A+ + I+ Sbjct: 170 VLQQRVTTVLCEYESEDPLKRKIAATMLSSLLLYAGFYLPLYFASRGKMMNTADMIRLIL 229 Query: 229 RDESLH 234 RD+++H Sbjct: 230 RDKAIH 235 >gi|225628773|ref|ZP_03786807.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti str. Cudo] gi|237817303|ref|ZP_04596295.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus str. 2308 A] gi|225616619|gb|EEH13667.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti str. Cudo] gi|237788116|gb|EEP62332.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus str. 2308 A] Length = 335 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/271 (20%), Positives = 107/271 (39%), Gaps = 33/271 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W++ L E+ + R +++ + + Sbjct: 43 TGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAL 99 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L L P + W+ + Sbjct: 100 TPHEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQ 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + AD + + V E FY+GF + K+ A+ + I+R Sbjct: 149 RKSTLILDQYHADDPLKKK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 206 Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H ++V+++ K +E + + +L E E+ Y E + Sbjct: 207 DEAVHGYYIGYKFQRALEVLSEEK-------RQEIKDFAFELLLELYDNEVRYT-EALYD 258 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 G VGL ++++ + AN+ +G E LF Sbjct: 259 G-VGLT-EDVKKFLHYNANKALMNLGYEALF 287 >gi|317506846|ref|ZP_07964618.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974] gi|316254774|gb|EFV14072.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974] Length = 332 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 65/329 (19%), Positives = 130/329 (39%), Gaps = 47/329 (14%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N+++ K W++ + N W+P +VP+ +D+ W + N + + L + Sbjct: 25 NRVVDEKDSEVWDRLVG---NFWLPEKVPLSNDIQSWHTLNEHEQQLTMRVFTGLTLLDT 81 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG----LDEGELFN 147 + V +++ P AF E+VH+ ++ I ++L +DE F Sbjct: 82 IQGAVG---AVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLSNTPEIDEA--FR 136 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA L+ + D + V + E FY+GF Sbjct: 137 WSEENPNLQRKAAIVLERYR-------------GDDPLKRK--VASTLLESFLFYSGFYL 181 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQK 260 + K+ A+ + I+RDE++H + G+ + + E E + Sbjct: 182 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLAASTEQRRE-------ELKDF 234 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--- 317 + ++L + E+ Y + VGL ++++++ AN+ + +G E LF E Sbjct: 235 TFSLLFDLYENEVEYTQDLYDP--VGLTE-DVKKFLRYNANKALNNLGYEGLFPKDETSV 291 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 NP + + + +FF + Y G Sbjct: 292 NPAILSALSPNADENHDFFSGSGSSYVIG 320 >gi|304445906|pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase From Corynebacterium Ammoniagenes gi|304445907|pdb|3MJO|B Chain B, Small Subunit (R2f) Of Native Ribonucleotide Reductase From Corynebacterium Ammoniagenes Length = 296 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 51/275 (18%), Positives = 106/275 (38%), Gaps = 33/275 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W N +T E+L R +++ +++ Sbjct: 36 TGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAE 92 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 AF E+VH+ ++ I +L P I W+ + Sbjct: 93 TMHEEAVYTNIAFMESVHAKSYSNIFMTLA-----------STPQINEAFRWSEENENLQ 141 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + V + E FY+GF + L K+ A+ + I+R Sbjct: 142 RKAKIIMSYYNGDDPLKKK--VASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIR 199 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DES+H + G+ +++ + E E++ + ++++ EI Y + Sbjct: 200 DESVHGYYIGYKYQQGVKKLSEAEQE-------EYKAYTFDLMYDLYENEIEYTEDIYDD 252 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +G ++++++ AN+ + +G E LF E Sbjct: 253 --LGW-TEDVKRFLRYNANKALNNLGYEGLFPTDE 284 >gi|22125124|ref|NP_668547.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] gi|45442235|ref|NP_993774.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|51597273|ref|YP_071464.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108808370|ref|YP_652286.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Antiqua] gi|108811297|ref|YP_647064.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Nepal516] gi|145598906|ref|YP_001162982.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Pestoides F] gi|149365457|ref|ZP_01887492.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis CA88-4125] gi|162420024|ref|YP_001607865.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Angola] gi|165925252|ref|ZP_02221084.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165939901|ref|ZP_02228439.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008124|ref|ZP_02229022.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166212554|ref|ZP_02238589.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167398943|ref|ZP_02304467.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421281|ref|ZP_02313034.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423716|ref|ZP_02315469.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468720|ref|ZP_02333424.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis FV-1] gi|170023362|ref|YP_001719867.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis YPIII] gi|186896377|ref|YP_001873489.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218929725|ref|YP_002347600.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis CO92] gi|229838202|ref|ZP_04458361.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895452|ref|ZP_04510624.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis Pestoides A] gi|229898686|ref|ZP_04513831.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901543|ref|ZP_04516665.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis Nepal516] gi|270489729|ref|ZP_06206803.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis KIM D27] gi|294504447|ref|YP_003568509.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis Z176003] gi|21957983|gb|AAM84798.1|AE013726_1 ribonucleoside-diphosphate reductase 2, beta chain, frag [Yersinia pestis KIM 10] gi|45437099|gb|AAS62651.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis biovar Microtus str. 91001] gi|51590555|emb|CAH22196.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pseudotuberculosis IP 32953] gi|108774945|gb|ABG17464.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Yersinia pestis Nepal516] gi|108780283|gb|ABG14341.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Yersinia pestis Antiqua] gi|115348336|emb|CAL21269.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis CO92] gi|145210602|gb|ABP40009.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Yersinia pestis Pestoides F] gi|149291870|gb|EDM41944.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis CA88-4125] gi|162352839|gb|ABX86787.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis Angola] gi|165912120|gb|EDR30759.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922859|gb|EDR40010.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992506|gb|EDR44807.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166206485|gb|EDR50965.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166960770|gb|EDR56791.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051447|gb|EDR62855.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057886|gb|EDR67632.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749896|gb|ACA67414.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis YPIII] gi|186699403|gb|ACC90032.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+] gi|229681472|gb|EEO77566.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis Nepal516] gi|229688234|gb|EEO80305.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis biovar Orientalis str. India 195] gi|229694568|gb|EEO84615.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701607|gb|EEO89634.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis Pestoides A] gi|262362562|gb|ACY59283.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis D106004] gi|262366433|gb|ACY62990.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis D182038] gi|270338233|gb|EFA49010.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis KIM D27] gi|294354906|gb|ADE65247.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis Z176003] gi|320016142|gb|ADV99713.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 323 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 57/270 (21%), Positives = 117/270 (43%), Gaps = 23/270 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W + LT E+ + R +++ A+ + Sbjct: 31 TSNFWLPEKVPLSNDIPSWAT---LTPHEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAI 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P +F EAVH+ ++ I ++L L ++ + YR ++ N LQ + Sbjct: 88 TPHEEAIFSNISFMEAVHARSYSSIFSTLCL-TSDVDDAYR-----WSEDNGPLQKKADI 141 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 S + D ++ + +F+ E FY+GF + K+ A+ + I+R Sbjct: 142 ISQHY--HNDDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 194 Query: 230 DESLHLNF-GIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 DE++H + G + KI++ H +E + + +L + E+ Y + VG Sbjct: 195 DEAVHGYYIGYKFQKGLGKIDSAH--RQEIKNFAFDLLQDLYDNEVRYTEDLY--DHVGW 250 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++++ + AN+ +G E LF ++ Sbjct: 251 TE-DVKKFLHYNANKALMNLGYEALFPASQ 279 >gi|269217712|ref|ZP_06161566.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212647|gb|EEZ78987.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 325 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 20/187 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W + L E+ M R +++ +++ Sbjct: 33 TGNFWLPEKIPLSNDIPSWST---LKPHEQQMTTRVFTGLTLLDTVQGTVGAVSLIPDAV 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P L AF E+VH+ ++ I ++L E E F E + KA L Y + Sbjct: 90 TPHEEAVLTNIAFMESVHAKSYSSIFSTLISTEEIDETFRWSEENEYLQKKAKIILDYYR 149 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +DA++ V + E FY+GF + K+ A+ + I Sbjct: 150 G----------EDAEKRK-----VASTMLESFLFYSGFYAPMYWSAHAKLTNTADLIRLI 194 Query: 228 MRDESLH 234 +RDE++H Sbjct: 195 IRDEAVH 201 >gi|298253146|ref|ZP_06976938.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1] gi|297532541|gb|EFH71427.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1] Length = 331 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 22/186 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D+ W+S LTD ER R L +S++ + L H Sbjct: 41 NFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGLTLLDTSQATIGE---LCQIEHA 94 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF +++H+ ++ I ++L E E+ YR WA+ Sbjct: 95 RTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAYR----------WAV--GND 141 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 + TT + + E + + + Y GF L KM+ A+ + I+ Sbjct: 142 VLQQRVTTVLCEYESEDPLKRKIAATMLSSLLLYAGFYLPLYFASRGKMMNTADMIRLIL 201 Query: 229 RDESLH 234 RD+++H Sbjct: 202 RDKAIH 207 >gi|308235083|ref|ZP_07665820.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella vaginalis ATCC 14018] gi|311115217|ref|YP_003986438.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella vaginalis ATCC 14019] gi|310946711|gb|ADP39415.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella vaginalis ATCC 14019] Length = 364 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 22/186 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D+ W+S LTD ER R L +S++ + L H Sbjct: 74 NFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGLTLLDTSQATIGE---LCQIEHA 127 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF +++H+ ++ I ++L E E+ YR WA+ Sbjct: 128 RTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAYR----------WAVG--ND 174 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 + TT + + E + + + Y GF L KM+ A+ + I+ Sbjct: 175 VLQQRVTTVLCEYESEDPLKRKIAATMLSSLLLYAGFYLPLYFASRGKMMNTADMIRLIL 234 Query: 229 RDESLH 234 RD+++H Sbjct: 235 RDKAIH 240 >gi|23465253|ref|NP_695856.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum NCC2705] gi|23325884|gb|AAN24492.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium longum NCC2705] Length = 330 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 53/263 (20%), Positives = 102/263 (38%), Gaps = 21/263 (7%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W+ +T+DE + R +++ +++ P Sbjct: 40 NFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTP 96 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 AF E+VH+ ++ I ++L E I A +W+ Sbjct: 97 HEEAVYTNIAFMESVHAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQKK 145 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + D + + V + E FY+GF + K+ A+ + I+RDE Sbjct: 146 AEIVLDYYEGDNPYKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDE 203 Query: 232 SLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 ++H + I Q I + + Q + +L+E E+ Y VGL Sbjct: 204 AVH-GYYIGYKYQKGIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLY--DCVGL-TD 259 Query: 291 SCEQYMQFIANRRCHQIGLEPLF 313 E+++++ N+ +G LF Sbjct: 260 DVEKFLRYNGNKALMNLGYPALF 282 >gi|292489180|ref|YP_003532067.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia amylovora CFBP1430] gi|292900297|ref|YP_003539666.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia amylovora ATCC 49946] gi|291200145|emb|CBJ47271.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia amylovora ATCC 49946] gi|291554614|emb|CBA22274.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia amylovora CFBP1430] Length = 319 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 60/267 (22%), Positives = 114/267 (42%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W N L+ DE+ + R +++ A+ Sbjct: 27 TSNFWLPEKVPLSNDIPSW---NSLSADEQQLTIRVFTGLTLLDTIQNTLGAPALMADAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P + +F EAVH+ ++ I ++L D + + + AKA LQ+ Sbjct: 84 TPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSEDNAPLQAKAQIILQHYY 143 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D ++ + +F+ E FY+GF + K+ A+ + I Sbjct: 144 ----------HNDPLKKKIASVFL-----ESFLFYSGFYLPVYWSSRGKLTNTADLIRLI 188 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 ++DE++H + G ++ E P +E QQ + +L E E+AY + + G VG Sbjct: 189 IKDEAVHGYYIGYKYQKALEKETPQR-KEELQQFAIELLLELYENELAYT-DALYSG-VG 245 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++++ + AN+ +G E LF Sbjct: 246 WQE-DVKKFLHYNANKALMNLGYEALF 271 >gi|187734239|ref|YP_001881572.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii CDC 3083-94] gi|187431231|gb|ACD10505.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella boydii CDC 3083-94] Length = 319 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETSW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|191167101|ref|ZP_03028922.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B7A] gi|260856787|ref|YP_003230678.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O26:H11 str. 11368] gi|309795135|ref|ZP_07689554.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|331664233|ref|ZP_08365139.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA143] gi|190902883|gb|EDV62611.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B7A] gi|257755436|dbj|BAI26938.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O26:H11 str. 11368] gi|308121106|gb|EFO58368.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|323154887|gb|EFZ41079.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli EPECa14] gi|331058164|gb|EGI30145.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA143] Length = 319 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 104/265 (39%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|217958930|ref|YP_002337478.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH187] gi|222095086|ref|YP_002529146.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus Q1] gi|229138141|ref|ZP_04266739.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST26] gi|229195650|ref|ZP_04322416.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1293] gi|217065393|gb|ACJ79643.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH187] gi|221239144|gb|ACM11854.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus Q1] gi|228587899|gb|EEK45951.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1293] gi|228645486|gb|EEL01720.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST26] Length = 193 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 12/178 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E ++F P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 P T ++ L V V E FY+GF L L K+ E I+R Sbjct: 143 PEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIR 193 >gi|227548647|ref|ZP_03978696.1| ribonucleoside-diphosphate reductase [Corynebacterium lipophiloflavum DSM 44291] gi|227079261|gb|EEI17224.1| ribonucleoside-diphosphate reductase [Corynebacterium lipophiloflavum DSM 44291] Length = 332 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 48/269 (17%), Positives = 104/269 (38%), Gaps = 21/269 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W++ N + + L + + V +L + + Sbjct: 40 TGNFWLPEKVPVSNDIPSWRTLNDYEKTATMRVFTGLTLLDTIQGTVGAVSLLPDAKTMH 99 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + AF E+VH+ ++ I +L + P+I W+ + Sbjct: 100 EEAVYTNI---AFMESVHAKSYSNIFMTLA-----------DTPAINDAFRWSEENESLQ 145 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + V + E FY+GF + +K+ A+ + I+R Sbjct: 146 RKAKIILSYYEGDNPHKKK--VASTLLESFLFYSGFYLPMYWSSHSKLTNTADVIRLIIR 203 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLN 288 DE++H + + + + E + + +L++ E Y + P G+ Sbjct: 204 DEAVHGYYIGYKYQRGQADLSQAERDELKDYTFNLLYDLYENETQYTEDIYDPLGWT--- 260 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++++++ AN+ + +G E LF E Sbjct: 261 -EDVKRFLRYNANKALNNLGYEGLFPQDE 288 >gi|24943146|ref|NP_733908.1| ORF54 [Callitrichine herpesvirus 3] gi|13676697|gb|AAK38263.1|AF319782_57 ORF54 [callitrichine herpesvirus 3] Length = 302 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 58/263 (22%), Positives = 105/263 (39%), Gaps = 31/263 (11%) Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 F A +E LV NI + + S+ + Y Q E +H T+ I+ L + + Sbjct: 56 FLAMAEKLVNFNIDELLPQFCSH-DIEHYYTEQKAMENIHGETYANILNMLFDGDKKAVA 114 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 Y + A+ ALQ + + A++ + +++ EG++F + F Sbjct: 115 QYAD----EVIADKALQAKICWLNGMVNSAVTKAEK------ILIFLLIEGIFFISSFYS 164 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL-WTKEFQQKSRTM 264 I L M GI YI RDE LH + N + K E P W + +++ Sbjct: 165 IAVLRTRGIMPGICLANNYISRDELLHTTAATLLYNSMTSKSERPQSEWIEALFRRA--- 221 Query: 265 LHEATLLEIAYAH-ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPF 320 +++ Y E +G ++ +++ A+R +G+ ++ + P Sbjct: 222 ------VDVEYNFIEARGRGVTNIDLKGIRDFLEATADRILGDLGMTAIYDTRPPPDCPL 275 Query: 321 PWMSEVIDLKKEKNFFETRVTEY 343 +M+ V K NFFE +EY Sbjct: 276 TYMTSV----KHTNFFEQENSEY 294 >gi|269794349|ref|YP_003313804.1| ribonucleoside-diphosphate reductase class Ib subunit beta [Sanguibacter keddieii DSM 10542] gi|269096534|gb|ACZ20970.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Sanguibacter keddieii DSM 10542] Length = 325 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 63/304 (20%), Positives = 121/304 (39%), Gaps = 30/304 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ +++ Sbjct: 33 TGNFWLPEKVPVSNDIQSWAT---LTPVEKELTTRVFTGLTLLDTIQGTVGAVSLIPDAI 89 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYT 166 P AF E+VH+ ++ I ++L + E+ + +R E ++ KA L+Y Sbjct: 90 TPHEEAVYTNIAFMESVHAKSYSSIFSTL-ISTQEIDDAFRWSEENANLQRKAEIVLEYY 148 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 S + + E FY+GF + K+ A+ + Sbjct: 149 HGDSPLKRKVAS---------------TLLESFLFYSGFYLPMYWSSRAKLTNTADLIRL 193 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 I+RDE++H + I Q +E + E + + +L E E+ Y + V Sbjct: 194 IIRDEAVH-GYYIGYKYQKGLEKLSPAERDEMKAYTFELLFELYENEVQYTADLYDG--V 250 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTE 342 GL ++++++ AN+ +G E LF E NP + + + +FF + Sbjct: 251 GLTE-DVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSALSPNADENHDFFSGSGSS 309 Query: 343 YQQG 346 Y G Sbjct: 310 YVIG 313 >gi|153949141|ref|YP_001400043.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis IP 31758] gi|152960636|gb|ABS48097.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pseudotuberculosis IP 31758] Length = 323 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 55/268 (20%), Positives = 113/268 (42%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W + LT E+ + R +++ A+ + Sbjct: 31 TSNFWLPEKVPLSNDIPSWAT---LTPHEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAI 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQ 167 P +F EAVH+ ++ I ++L L D + + + + KA+ LQ+ Sbjct: 88 TPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSEDNGPLQKKADIILQHYH 147 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D ++ + +F+ E FY+GF + K+ A+ + I Sbjct: 148 N----------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 192 Query: 228 MRDESLHLNF-GIDVINQI-KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 +RDE++H + G + K+++ H +E + + +L + E+ Y + V Sbjct: 193 IRDEAVHGYYIGYKFQKGLEKVDSVH--RQEIKNFAFDLLQDLYDNEVRYTEDLY--DHV 248 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 G ++++ + AN+ +G E LF Sbjct: 249 GWTE-DVKKFLHYNANKALMNLGYEALF 275 >gi|325291517|ref|YP_004277381.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium sp. H13-3] gi|325059370|gb|ADY63061.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium sp. H13-3] Length = 324 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 58/265 (21%), Positives = 109/265 (41%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W + L +E+ + R +++ + + + Sbjct: 32 TSNFWLPEKVPLSNDIPSWGT---LKPEEQTLTIRVFTGLTLLDTIQNGVGSVRLMADSA 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L ++ + YR ++ N LQ L Sbjct: 89 TPHEEAVLSNISFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSAL 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + +G + V V E FY+GF + K+ A+ + I+R Sbjct: 143 IMREYDSGNP-------LKMKVASVFLESFLFYSGFYLPMFWSSRAKLTNTADLIRLIIR 195 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E +E + + +L E E Y + VGL Sbjct: 196 DEAVH-GYYIGYKFQRALERLGEAEKQEIKDFAFDLLLELYDNEAKYTQDLYDG--VGLT 252 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 +Q++ + AN+ +G E LF Sbjct: 253 E-DVKQFLHYNANKALMNLGYEALF 276 >gi|146312797|ref|YP_001177871.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp. 638] gi|145319673|gb|ABP61820.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Enterobacter sp. 638] Length = 319 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 56/274 (20%), Positives = 112/274 (40%), Gaps = 39/274 (14%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ L+ E+ + R +++ + A+ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLLDTIQNSVGAPALMGDSL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P + +F EAVH+ ++ I ++L D ++ S+ KA L+Y Sbjct: 84 TPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSEASTSLQRKAQLVLEYYH 143 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 AD + + V E FY+GF + K+ A+ + I Sbjct: 144 -------------ADDPLKKK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLI 188 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G++ I++ K E E + + +L + E++Y E Sbjct: 189 IRDEAVHGYYIGYKYQKGLEKISEAKRE-------ELKGFALDLLMDLYDNELSYTEEL- 240 Query: 281 PKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLF 313 + G + + ++ + AN+ +G E LF Sbjct: 241 ---YAGTSWETDVKAFLCYNANKALMNLGYEALF 271 >gi|16130590|ref|NP_417162.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. MG1655] gi|74313247|ref|YP_311666.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei Ss046] gi|89109469|ref|AP_003249.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli str. K-12 substr. W3110] gi|157162127|ref|YP_001459445.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli HS] gi|170019072|ref|YP_001724026.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli ATCC 8739] gi|170082262|ref|YP_001731582.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. DH10B] gi|188492563|ref|ZP_02999833.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 53638] gi|193065983|ref|ZP_03047042.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E22] gi|193070996|ref|ZP_03051924.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E110019] gi|194427830|ref|ZP_03060376.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B171] gi|194439440|ref|ZP_03071516.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 101-1] gi|209920120|ref|YP_002294204.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli SE11] gi|218696273|ref|YP_002403940.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 55989] gi|238901820|ref|YP_002927616.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli BW2952] gi|256019542|ref|ZP_05433407.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] gi|256024812|ref|ZP_05438677.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 4_1_40B] gi|260845324|ref|YP_003223102.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O103:H2 str. 12009] gi|293448994|ref|ZP_06663415.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|300906827|ref|ZP_07124508.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 84-1] gi|300916824|ref|ZP_07133528.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 115-1] gi|300922750|ref|ZP_07138839.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 182-1] gi|300930529|ref|ZP_07145925.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 187-1] gi|300949072|ref|ZP_07163119.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 116-1] gi|300957447|ref|ZP_07169660.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 175-1] gi|301026690|ref|ZP_07190101.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 196-1] gi|301306007|ref|ZP_07212087.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 124-1] gi|301327384|ref|ZP_07220633.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 78-1] gi|301645345|ref|ZP_07245292.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 146-1] gi|307139368|ref|ZP_07498724.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli H736] gi|307314435|ref|ZP_07594040.1| Ribonucleoside-diphosphate reductase [Escherichia coli W] gi|312973113|ref|ZP_07787286.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 1827-70] gi|331643364|ref|ZP_08344495.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H736] gi|331669414|ref|ZP_08370260.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA271] gi|331678654|ref|ZP_08379328.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H591] gi|332280666|ref|ZP_08393079.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] gi|2507306|sp|P37146|RIR4_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta; AltName: Full=R2F protein; AltName: Full=Ribonucleotide reductase 2 gi|303325061|pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli gi|303325062|pdb|3N38|A Chain A, Ribonucleotide Reductase Nrdf From Escherichia Coli Soaked With Ferrous Ions gi|303325063|pdb|3N39|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Nrdi gi|303325065|pdb|3N39|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Nrdi gi|303325067|pdb|3N3A|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Reduced Nrdi gi|303325069|pdb|3N3A|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Reduced Nrdi gi|303325071|pdb|3N3B|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Reduced Nrdi With A Trapped Peroxide gi|303325073|pdb|3N3B|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Reduced Nrdi With A Trapped Peroxide gi|1789031|gb|AAC75723.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. MG1655] gi|1800064|dbj|BAA16541.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli str. K12 substr. W3110] gi|73856724|gb|AAZ89431.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Shigella sonnei Ss046] gi|157067807|gb|ABV07062.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli HS] gi|169754000|gb|ACA76699.1| Ribonucleoside-diphosphate reductase [Escherichia coli ATCC 8739] gi|169890097|gb|ACB03804.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. DH10B] gi|188487762|gb|EDU62865.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 53638] gi|192926397|gb|EDV81032.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E22] gi|192955654|gb|EDV86129.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E110019] gi|194414063|gb|EDX30339.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B171] gi|194421616|gb|EDX37627.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 101-1] gi|209762244|gb|ACI79434.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|209913379|dbj|BAG78453.1| ribonucleoside-diphosphate reductase beta subunit [Escherichia coli SE11] gi|218353005|emb|CAU98821.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli 55989] gi|238863480|gb|ACR65478.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli BW2952] gi|257760471|dbj|BAI31968.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O103:H2 str. 12009] gi|291322084|gb|EFE61513.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|299879612|gb|EFI87823.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 196-1] gi|300315803|gb|EFJ65587.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 175-1] gi|300401428|gb|EFJ84966.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 84-1] gi|300415890|gb|EFJ99200.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 115-1] gi|300420935|gb|EFK04246.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 182-1] gi|300451458|gb|EFK15078.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 116-1] gi|300461585|gb|EFK25078.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 187-1] gi|300838718|gb|EFK66478.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 124-1] gi|300846038|gb|EFK73798.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 78-1] gi|301076379|gb|EFK91185.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 146-1] gi|306906003|gb|EFN36524.1| Ribonucleoside-diphosphate reductase [Escherichia coli W] gi|309703041|emb|CBJ02373.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli ETEC H10407] gi|310333055|gb|EFQ00269.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 1827-70] gi|315061957|gb|ADT76284.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli W] gi|315254452|gb|EFU34420.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 85-1] gi|315615063|gb|EFU95700.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 3431] gi|320198428|gb|EFW73030.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli EC4100B] gi|320656721|gb|EFX24609.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662264|gb|EFX29661.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O55:H7 str. USDA 5905] gi|320667315|gb|EFX34273.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. LSU-61] gi|323173041|gb|EFZ58672.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli LT-68] gi|323183202|gb|EFZ68599.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 1357] gi|323377462|gb|ADX49730.1| Ribonucleoside-diphosphate reductase [Escherichia coli KO11] gi|323935630|gb|EGB31947.1| ribonucleotide reductase [Escherichia coli E1520] gi|323946352|gb|EGB42381.1| ribonucleotide reductase [Escherichia coli H120] gi|323960578|gb|EGB56205.1| ribonucleotide reductase [Escherichia coli H489] gi|323971479|gb|EGB66714.1| ribonucleotide reductase [Escherichia coli TA007] gi|324020305|gb|EGB89524.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 117-3] gi|324120035|gb|EGC13912.1| ribonucleotide reductase [Escherichia coli E1167] gi|331036835|gb|EGI09059.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H736] gi|331063082|gb|EGI34995.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA271] gi|331073484|gb|EGI44805.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H591] gi|332103018|gb|EGJ06364.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] gi|332344558|gb|AEE57892.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli UMNK88] Length = 319 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|207108882|ref|ZP_03243044.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori HPKX_438_CA4C1] Length = 79 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 2/64 (3%) Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEY 343 +GL + EQY+QF+A+ R ++G+ ++ ++P W+ +++ NFFE RV+ Y Sbjct: 11 LGLTSSLIEQYIQFLADSRLSKVGIAKVYG-VQHPIKWVESFSSFNEQRSNFFEARVSNY 69 Query: 344 QQGA 347 +G+ Sbjct: 70 AKGS 73 >gi|323966928|gb|EGB62356.1| ribonucleotide reductase [Escherichia coli M863] gi|327251394|gb|EGE63080.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli STEC_7v] Length = 319 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 50/265 (18%), Positives = 104/265 (39%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDNPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E + + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISMAQREELKSFAFDLLLELYDNELQYTDELYAETTW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|320173468|gb|EFW48667.1| ribonucleotide-diphosphate reductase subunit beta [Shigella dysenteriae CDC 74-1112] Length = 319 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKNFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|323188442|gb|EFZ73728.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli RN587/1] Length = 319 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 50/265 (18%), Positives = 105/265 (39%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D+ + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISLAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 + + ++ + AN+ +G EPLF Sbjct: 247 SDDVKAFLCYNANKALMNLGYEPLF 271 >gi|322614368|gb|EFY11299.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621567|gb|EFY18420.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624428|gb|EFY21261.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626626|gb|EFY23431.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633514|gb|EFY30256.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638443|gb|EFY35141.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639746|gb|EFY36430.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643792|gb|EFY40342.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649478|gb|EFY45912.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655932|gb|EFY52232.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661327|gb|EFY57552.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662525|gb|EFY58733.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666899|gb|EFY63074.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671269|gb|EFY67392.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677724|gb|EFY73787.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681449|gb|EFY77479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683848|gb|EFY79858.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193763|gb|EFZ78966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197449|gb|EFZ82586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203264|gb|EFZ88293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205210|gb|EFZ90185.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212777|gb|EFZ97588.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218081|gb|EGA02793.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221656|gb|EGA06069.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225124|gb|EGA09375.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230844|gb|EGA14962.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234805|gb|EGA18891.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238844|gb|EGA22894.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241544|gb|EGA25575.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248309|gb|EGA32245.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252925|gb|EGA36759.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256953|gb|EGA40662.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260572|gb|EGA44183.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264370|gb|EGA47876.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269504|gb|EGA52957.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 319 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 57/272 (20%), Positives = 111/272 (40%), Gaps = 37/272 (13%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF--------FASSESLVANNIVL 102 +N W+P +VP+ +D+ W++ + +++L I+ G A + SL+A+ I Sbjct: 28 SNFWLPEKVPLSNDIPAWQTLSAA--EQQLTIRVFTGLTLLDTIQNIAGAPSLMADAIT- 84 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 P L +F EAVH+ ++ I ++L + + A W+ Sbjct: 85 --------PHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKEVDAAYAWS 125 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + +D+ + + V E FY+GF + K+ A+ Sbjct: 126 EENPPLQRKAQIILAHYVSDEPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTAD 183 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I+RDE++H + I QI ++ + +E + + +L E EI Y E + Sbjct: 184 LIRLIIRDEAVH-GYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEICYT-EALY 241 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +N + ++ + AN+ +G E LF Sbjct: 242 AETDWVN--DVKAFLCYNANKALMNLGYEALF 271 >gi|327440682|dbj|BAK17047.1| ribonucleotide reductase, beta subunit [Solibacillus silvestris StLB046] Length = 294 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 32/230 (13%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-- 111 W P ++ D WK L ++++L + F E V +I L + +S Sbjct: 30 WNPVDIDFTQDKEDWKK---LNEEQQLEVLTQFAQFIGGEEAVTQDI-LPMIMAVSKKGW 85 Query: 112 -ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM----YREVPSITAKANWALQYT 166 E YL FEEA H+ F + +G+ + +L ++ YR++ + Sbjct: 86 FEEESYLTTFLFEEAKHAEFFSLFLEEIGVKD-DLTHLLTPGYRKL------------FD 132 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTG---FAQILSLGRANKMVGIAE 222 +TL + +D E + D V Y +F EG+ TG F + LS AN G Sbjct: 133 ETLPA-VMGRLIEDQSPEAMIDAAVTYNIFAEGVLAETGYWFFHEALS--SANLFPGFIS 189 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLL 271 + + RDE H+ FG +I ++ ENP L E QQ+ + +L A +L Sbjct: 190 GIRNVKRDEGRHIGFGTFLIQRLISENPELELFERVQQRLQELLPIAMML 239 >gi|157371959|ref|YP_001479948.1| ribonucleotide-diphosphate reductase subunit beta [Serratia proteamaculans 568] gi|157323723|gb|ABV42820.1| Ribonucleoside-diphosphate reductase [Serratia proteamaculans 568] Length = 323 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 54/285 (18%), Positives = 110/285 (38%), Gaps = 41/285 (14%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W + LT E+ + R +++ A+ Sbjct: 31 TSNFWLPEKVPLSNDIPSWAT---LTPKEQQLTIRVFTGLTLLDTIQNTVGAPALIADAI 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P +F EAVH+ ++ I ++L + P + W+ + Sbjct: 88 TPHEEAVYSNISFMEAVHARSYSSIFSTLC-----------QTPDVDDAYRWSEENRALQ 136 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 S +D ++ V V E FY+GF + K+ A+ + I+R Sbjct: 137 KKASIILAHYRSDDPLMKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 194 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H + G++ ++ + ++ + + +L + E+ Y E Sbjct: 195 DEAVHGYYIGYKFQKGLEKVDAAR-------RQQVKNFAFDLLQDLYDNEVRYTEEL--- 244 Query: 283 GFVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 + G+ + ++ + AN+ +G E LF P M+EV Sbjct: 245 -YDGVGWTEDVKTFLHYNANKALMNLGYEALFP------PSMAEV 282 >gi|15803196|ref|NP_289228.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 EDL933] gi|15832793|ref|NP_311566.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. Sakai] gi|168750919|ref|ZP_02775941.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|168755421|ref|ZP_02780428.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|168762471|ref|ZP_02787478.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|168768767|ref|ZP_02793774.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|168774792|ref|ZP_02799799.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|168778658|ref|ZP_02803665.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|168787931|ref|ZP_02812938.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC869] gi|168800561|ref|ZP_02825568.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC508] gi|195938430|ref|ZP_03083812.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. EC4024] gi|208808703|ref|ZP_03251040.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208813382|ref|ZP_03254711.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208819985|ref|ZP_03260305.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209400851|ref|YP_002272142.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|217327155|ref|ZP_03443238.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|254794623|ref|YP_003079460.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. TW14359] gi|261225973|ref|ZP_05940254.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256769|ref|ZP_05949302.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli O157:H7 str. FRIK966] gi|12517115|gb|AAG57786.1|AE005496_9 ribonucleoside-diphosphate reductase 2, beta chain [Escherichia coli O157:H7 str. EDL933] gi|13363010|dbj|BAB36962.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli O157:H7 str. Sakai] gi|187769524|gb|EDU33368.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188015002|gb|EDU53124.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|189003218|gb|EDU72204.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189357305|gb|EDU75724.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189362069|gb|EDU80488.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189367242|gb|EDU85658.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|189372097|gb|EDU90513.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC869] gi|189377142|gb|EDU95558.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC508] gi|208728504|gb|EDZ78105.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208734659|gb|EDZ83346.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208740108|gb|EDZ87790.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209162251|gb|ACI39684.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|209762240|gb|ACI79432.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|209762242|gb|ACI79433.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|209762246|gb|ACI79435.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|217319522|gb|EEC27947.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|254594023|gb|ACT73384.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli O157:H7 str. TW14359] gi|320189007|gb|EFW63666.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. EC1212] gi|320640665|gb|EFX10201.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. G5101] gi|326338609|gb|EGD62435.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. 1044] gi|326342863|gb|EGD66631.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. 1125] Length = 319 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|52080345|ref|YP_079136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus licheniformis ATCC 14580] gi|52785724|ref|YP_091553.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus licheniformis ATCC 14580] gi|319645870|ref|ZP_08000100.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp. BT1B_CT2] gi|52003556|gb|AAU23498.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus licheniformis ATCC 14580] gi|52348226|gb|AAU40860.1| NrdF [Bacillus licheniformis ATCC 14580] gi|317391620|gb|EFV72417.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp. BT1B_CT2] Length = 325 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 62/298 (20%), Positives = 119/298 (39%), Gaps = 20/298 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+P E+ + DL WK D + + L + + N + + H+ + Sbjct: 30 WLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQ---GNTGMPLVAEHVEGHQR 86 Query: 114 RQYL-LRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLS 170 + L E AVH+ ++ I +L E E+F ++ + KA + + + Sbjct: 87 KAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQIIVGLYEKI- 145 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + D+ L V V E FY+GF L K++ E I+RD Sbjct: 146 --------RQGDKISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRD 197 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E++H + + +I + +E S +L E E+ Y + + VGL + Sbjct: 198 EAIHGVYVGLLAQEIYNQQTPEKKEELYAFSIDLLKELYENELEYTEDLYDQ--VGL-SH 254 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 ++++++ AN+ +G E F+ E NP ++ + K +FF + Y++ Sbjct: 255 DVKKFIRYNANKALMNLGFEAYFEEEEINPIV-LNGLNTKTKSHDFFSMKGNGYKKAT 311 >gi|260448266|gb|ACX38688.1| Ribonucleoside-diphosphate reductase [Escherichia coli DH1] gi|315137289|dbj|BAJ44448.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli DH1] Length = 319 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKIFLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|310764903|gb|ADP09853.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia sp. Ejp617] Length = 319 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 59/267 (22%), Positives = 113/267 (42%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W S N + + L + ++ + ++A Sbjct: 27 TSNFWLPEKVPLSNDIPSWNSLNAEQQQLTIRVFTGLTLLDTIQNTLGAPALMA---DAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P + +F EAVH+ ++ I ++L D + + + KA LQ+ Sbjct: 84 TPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSEDNAPLQGKAQIILQHYY 143 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D ++ + +F+ E FY+GF + K+ A+ + I Sbjct: 144 ----------HNDPLKKKIASVFL-----ESFLFYSGFYLPVYWSSRGKLTNTADLIRLI 188 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 ++DE++H + G ++ E P L +E QQ + +L E E+AY E + G VG Sbjct: 189 IKDEAVHGYYIGYKYQKALEKETP-LRKEELQQFAIELLLELYENELAYT-EALYAG-VG 245 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++++ + AN+ +G E LF Sbjct: 246 WQK-DVKKFLHYNANKALMNLGYEALF 271 >gi|86156146|gb|ABC86791.1| ribonucleotide reductase beta subunit [Borrelia turicatae] Length = 321 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 69/296 (23%), Positives = 117/296 (39%), Gaps = 25/296 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ E+P+ DD +W N L DER + ++ LG ++ + + I + N Sbjct: 30 WVDEEIPISDDKLVW---NSLDIDERDVYEKVLGGLTLLDTEQGSVGMPRIALAIDNLAY 86 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + L E +H+ ++ I +SL + I +W Y Sbjct: 87 KPVLGFMGAMEHMHAKSYSSIFSSL-----------SNIERIDYIFDWVKTYRNFQDKLD 135 Query: 174 FTTGTKDA--DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 G + D+ L V E FY+GF L L KM+ E I+RDE Sbjct: 136 LILGKYNNIHDRMSLYKALCTSVFLETFLFYSGFFYPLYLAGQGKMINSGEIINLILRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQK-SRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 S+H F + ++ Q + +EF K + +L LE AY + +GL + Sbjct: 196 SVHGVF-VGLLAQEEFNKMTSREQEFAYKEAMFILDRLYDLEKAYTKDLYSS--IGLES- 251 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343 + + ++++ A++ +G EP F + NP D K +FF T+ Y Sbjct: 252 AVDVFVRYNADKALMNLGFEPTFNIQDIDVNPLVLNGLRTDTKTH-DFFSTKGNGY 306 >gi|194433043|ref|ZP_03065326.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella dysenteriae 1012] gi|194418770|gb|EDX34856.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella dysenteriae 1012] gi|320180201|gb|EFW55137.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii ATCC 9905] gi|332088601|gb|EGI93714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella dysenteriae 155-74] Length = 319 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E P +E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKIPLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|163867489|ref|YP_001608688.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella tribocorum CIP 105476] gi|161017135|emb|CAK00693.1| ribonucleoside-diphosphate reductase beta chain [Bartonella tribocorum CIP 105476] Length = 324 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 56/267 (20%), Positives = 110/267 (41%), Gaps = 29/267 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W S LT++ER + R +++ +++ Sbjct: 34 NFWLPEKVPLSNDIPSWSS---LTEEERKLTIRVFTGLTLLDTIQNTVGAISLLADAITE 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 L AF EAVH+ ++ I ++L ++ + F E + KA L+ + Sbjct: 91 HEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFRWSEENSHLQKKARLVLERYE-- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 A+ + + + E FY+GF + K+ A+ + I+R Sbjct: 149 -----------ANDPLKKK--IASTLLESFLFYSGFYLPMYWASRAKLTNTADLIRLIIR 195 Query: 230 DESLHLNFGIDVINQI---KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 DE++H + I Q+ K+E +E + + +L + +E Y + +G Sbjct: 196 DEAVH-GYYIGYKFQLGYAKLEEAK--RQEVKDFAFNLLFDLYNIECKYTEDLYDS--LG 250 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 L + ++ + AN+ +G E LF Sbjct: 251 L-TEDVKIFLHYNANKALMNLGFEALF 276 >gi|304398691|ref|ZP_07380563.1| Ribonucleoside-diphosphate reductase [Pantoea sp. aB] gi|304353902|gb|EFM18277.1| Ribonucleoside-diphosphate reductase [Pantoea sp. aB] Length = 326 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 54/267 (20%), Positives = 106/267 (39%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +DL W++ + + + L + ++++ + Sbjct: 34 TSNFWLPEKVPLSNDLPAWQTLDKQQQQLTIRVFTGLTLLDTIQNVIG---APGLMDDAI 90 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P L +F EAVH+ ++ I ++L D + E + KA L++ + Sbjct: 91 TPHEEAVLSNISFMEAVHARSYSSIFSTLCNTQDVDAAYQWSEENVPLQNKARIILEHYR 150 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D ++ + +F+ E FY+GF + K+ A+ + I Sbjct: 151 ----------ANDPLKKKIASVFL-----ESFLFYSGFWLPMYWSSRGKLTNTADLIRLI 195 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVG 286 +RDE++H + Q L +E QQ + +L E+AY G+V Sbjct: 196 IRDEAVHGYYIGYKYQQALATADDLRREELQQFAYDLLLALYENEVAYTEALYADVGWV- 254 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 + ++ + AN+ +G E LF Sbjct: 255 ---EEVKTFLHYNANKALMNLGYEALF 278 >gi|55978391|ref|YP_145447.1| ribonucleoside-diphosphate reductase, beta subunit [Thermus thermophilus HB8] gi|55773564|dbj|BAD72004.1| ribonucleoside-diphosphate reductase, beta subunit [Thermus thermophilus HB8] Length = 294 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 71/303 (23%), Positives = 127/303 (41%), Gaps = 32/303 (10%) Query: 55 MPTEVPMQDDLALWKSKNGLTDD-ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 M TE Q DL + L D+ ER +++R L A E L +Y PE Sbjct: 1 MHTEFSFQSDL----QDHALADEKERSLVERALLAIAQVE-LAVKLFWARVYDRFPKPEI 55 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-YTQTLSSP 172 + L A E H++ + +++ LGL+E F E S AL+ Q L Sbjct: 56 AEVGLTFAESEVRHANAYAHLLELLGLEEA--FGQALEGAS-------ALRDRAQALGEA 106 Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDE 231 KD +E+ LF+F E + ++ F +++L R N+ GI+ + ++E Sbjct: 107 LRRAQGKDL-REYALALFLFSAFTEHVSLFSQFYVLMALNRRGNRYKGISNAIEATSKEE 165 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 ++H FG++++ ++ E+P + FQ+++ + + A E + P+ Sbjct: 166 NVHGLFGVELLRLLRTEHPEALGEGFQEEALRLAQ-----GLFRAEEALLDWLFSAGEPA 220 Query: 292 C---EQYMQFIANRRCHQI---GLEPLFKYTENPF---PWMSEVIDLKKEKNFFETRVTE 342 + ++F+ R + GL P+F E W + + KE +FF R Sbjct: 221 LVGHRETLEFLKGRYNQVLALHGLPPVFSVDEKALRDTEWFTLELLADKEVDFFNKRSVA 280 Query: 343 YQQ 345 Y + Sbjct: 281 YAR 283 >gi|260599071|ref|YP_003211642.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter turicensis z3032] gi|260218248|emb|CBA33173.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Cronobacter turicensis z3032] Length = 320 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 16/185 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ LT E+ + R +++ A+ Sbjct: 28 TSNFWLPEKVPLSNDIPAWQT---LTPGEQQLTIRVFTGLTLLDTIQNAVGAPALMADAL 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + P + A W+ + Sbjct: 85 TPHEEAVLSNVSFMEAVHARSYSSIFSTLC-----------QTPDVDAAYAWSEENAPLQ 133 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 134 RKAQIILAHYRDDDPLKKK--IASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIR 191 Query: 230 DESLH 234 DE++H Sbjct: 192 DEAVH 196 >gi|153010278|ref|YP_001371492.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum anthropi ATCC 49188] gi|151562166|gb|ABS15663.1| Ribonucleoside-diphosphate reductase [Ochrobactrum anthropi ATCC 49188] Length = 328 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 57/269 (21%), Positives = 106/269 (39%), Gaps = 33/269 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W++ L E+ + R +++ + + + P Sbjct: 38 NFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLLDTIQNAVGAVKLMDDAATP 94 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 L +F EAVH+ ++ I ++L L P + W+ + Sbjct: 95 HEEAVLSNISFMEAVHARSYSSIFSTLCL-----------TPDVDDAYRWSEENEFLQRK 143 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 AD + + V E FY+GF + K+ A+ + I+RDE Sbjct: 144 SVLILDQYRADDPLKRK--IASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDE 201 Query: 232 SLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 ++H G++ +N E K+F + +L E E+ Y E + G Sbjct: 202 AVHGYYIGYKFQRGLERLN----EEQKQAIKDF---AFELLLELYDNEVRYT-EALYDG- 252 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VGL ++++ + AN+ +G E LF Sbjct: 253 VGLTE-DVKKFLHYNANKALMNLGYEALF 280 >gi|238762669|ref|ZP_04623638.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia kristensenii ATCC 33638] gi|238698974|gb|EEP91722.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia kristensenii ATCC 33638] Length = 323 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 25/265 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W LT +E+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAK---LTAEEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 +F EAVH+ ++ I ++L D E + E ++ KAN L++ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCSTPDVDEAYRWSEENIALQKKANIILEHYNN- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D ++ + +F+ E FY+GF + ++ A+ + I+R Sbjct: 149 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRARLTNTADLIRLIIR 194 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E + + E + + +L + E+ Y + VG Sbjct: 195 DEAVH-GYYIGYKFQKGLEKVDISRRQEIKNFAYNLLQDLYDNEVRYTADLYDG--VGW- 250 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 ++++ + AN+ +G E LF Sbjct: 251 TEDVKKFLHYNANKALMNLGYEALF 275 >gi|156932794|ref|YP_001436710.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter sakazakii ATCC BAA-894] gi|156531048|gb|ABU75874.1| hypothetical protein ESA_00590 [Cronobacter sakazakii ATCC BAA-894] Length = 320 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 16/185 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ LT E+ + R +++ A+ Sbjct: 28 TSNFWLPEKVPLSNDIPAWQT---LTPGEQQLTIRVFTGLTLLDTIQNAVGAPALMADAL 84 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + P + A W+ + Sbjct: 85 TPHEEAVLSNVSFMEAVHARSYSSIFSTLC-----------QTPDVDAAYAWSEENAPLQ 133 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 134 RKAQIILAHYRDDDPLKKK--IASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIR 191 Query: 230 DESLH 234 DE++H Sbjct: 192 DEAVH 196 >gi|57014145|gb|AAT68710.2| ribonucleoside reductase beta subunit [Borrelia hermsii] Length = 321 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 65/296 (21%), Positives = 120/296 (40%), Gaps = 25/296 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ E+P+ DD +W + +G +ER + ++ LG ++ + + I + N + Sbjct: 30 WVDEEIPISDDKLVWNTLDG---EERDVYEKVLGGLTLLDTEQGSVGMPRIALAIDNLDY 86 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + L E +H+ ++ I +SL + I W Y Sbjct: 87 KPVLGFMGAMEHMHAKSYSSIFSSL-----------SNIDRIDHIFGWVKTYRNFQDKLD 135 Query: 174 FTTGTKDA--DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 G ++ D+ L V E FY+GF L L KMV E I+RDE Sbjct: 136 LILGKYNSIHDRMSLYKALCTSVFLETFLFYSGFFYPLYLAGQGKMVNSGEIINLILRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHETMPKGFVGLNAP 290 S+H F + ++ Q + + F Q+ T++ E LE AY + +GL Sbjct: 196 SVHGVF-VGLLAQEEFNKMTFKEQAFAQREATLILERLYYLESAYTKDLYSS--IGLEG- 251 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343 + + ++++ A++ +G + F + NP ++ + K +FF T+ Y Sbjct: 252 AVDVFVRYNADKALMNLGFDSAFNIRDIDVNPLV-LNGLRTNTKTHDFFSTKGNGY 306 >gi|30960753|gb|AAP39174.1| UL40 [Human herpesvirus 1] Length = 307 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 65/299 (21%), Positives = 115/299 (38%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 23 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W + Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + I + I Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVICQSNDLI 184 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K + + +A +EI + P L Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240 Query: 288 NA---PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299 >gi|323978713|gb|EGB73795.1| ribonucleotide reductase [Escherichia coli TW10509] Length = 319 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 50/265 (18%), Positives = 104/265 (39%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDNPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E + + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISMAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|312173339|emb|CBX81594.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia amylovora ATCC BAA-2158] Length = 319 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 59/267 (22%), Positives = 114/267 (42%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W N ++ DE+ + R +++ A+ Sbjct: 27 TSNFWLPEKVPLSNDIPSW---NSISADEQQLTIRVFTGLTLLDTIQNTLGAPALMADAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P + +F EAVH+ ++ I ++L D + + + AKA LQ+ Sbjct: 84 TPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSEDNAPLQAKAQIILQHYY 143 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D ++ + +F+ E FY+GF + K+ A+ + I Sbjct: 144 ----------HNDPLKKKIASVFL-----ESFLFYSGFYLPVYWSSRGKLTNTADLIRLI 188 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 ++DE++H + G ++ E P +E QQ + +L E E+AY + + G VG Sbjct: 189 IKDEAVHGYYIGYKYQKALEKETPQR-KEELQQFAIELLLELYENELAYT-DALYSG-VG 245 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++++ + AN+ +G E LF Sbjct: 246 WQE-DVKKFLHYNANKALMNLGYEALF 271 >gi|227547058|ref|ZP_03977107.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212475|gb|EEI80364.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 330 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 52/265 (19%), Positives = 102/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ +T+DE + +++ +++ Sbjct: 38 TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P AF E+VH+ ++ I ++L E I A +W+ Sbjct: 95 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQ 143 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + + V + E FY+GF + K+ A+ + I+R Sbjct: 144 KKAEIVLDYYEGDNPYKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIR 201 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q I + + Q + +L+E E+ Y + VGL Sbjct: 202 DEAVH-GYYIGYKYQKGIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGL- 257 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 E+++++ N+ +G LF Sbjct: 258 TDDVEKFLRYNGNKALMNLGYPALF 282 >gi|324005772|gb|EGB74991.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 57-2] Length = 319 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ +L Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIGAPSLLP---DAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E +E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISQAQREELKSFAFDLLLELYDNELQYTDELYAETTW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|241895721|ref|ZP_04783017.1| ribonucleotide-diphosphate reductase subunit beta [Weissella paramesenteroides ATCC 33313] gi|241871088|gb|EER74839.1| ribonucleotide-diphosphate reductase subunit beta [Weissella paramesenteroides ATCC 33313] Length = 318 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 45/195 (23%), Positives = 82/195 (42%), Gaps = 23/195 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ +T+ E ++ G ++L + + + Sbjct: 21 TWEK---LTEQFWLDTRIPLSNDLDDWRK---MTEQEHYLVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKA 159 ++ + L F E+VH+ ++ I +L + E+F+ + Sbjct: 75 ASLKQATRTQHELAVLNNIEFMESVHAKSYSSIFETLHTPAEIDEIFDW--------TNS 126 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + G++ + V V E FY+GF L NK+ Sbjct: 127 NEFLQYKANRINQVYQNGSQLQRK-------VASVFLETFLFYSGFYTPLWYLGHNKLNN 179 Query: 220 IAEQYQYIMRDESLH 234 +AE + I+RDES+H Sbjct: 180 VAEIIKLILRDESVH 194 >gi|23335914|ref|ZP_00121145.1| COG0208: Ribonucleotide reductase, beta subunit [Bifidobacterium longum DJO10A] gi|189440326|ref|YP_001955407.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum DJO10A] gi|189428761|gb|ACD98909.1| Ribonucleotide reductase beta subunit [Bifidobacterium longum DJO10A] Length = 330 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 37/185 (20%), Positives = 72/185 (38%), Gaps = 16/185 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ +T+DE + R +++ +++ Sbjct: 38 TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P AF E+VH+ ++ I ++L E I A +W+ Sbjct: 95 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQ 143 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + + V + E FY+GF + K+ A+ + I+R Sbjct: 144 KKAEIVLDYYEGDNPYKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIR 201 Query: 230 DESLH 234 DE++H Sbjct: 202 DEAVH 206 >gi|291455662|ref|ZP_06595052.1| ribonucleoside-diphosphate reductase, beta subunit [Bifidobacterium breve DSM 20213] gi|291382590|gb|EFE90108.1| ribonucleoside-diphosphate reductase, beta subunit [Bifidobacterium breve DSM 20213] Length = 330 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 52/265 (19%), Positives = 101/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W+ +T+DE + +++ +++ Sbjct: 38 TGNFWLPEKVPVSNDIPSWQK---MTEDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P AF E+VH+ ++ I ++L E I A +W+ Sbjct: 95 TPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTE-----------QIDAAFDWSENNEFLQ 143 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + + V + E FY+GF + K+ A+ + I+R Sbjct: 144 KKAEIVLDYYEGDNPYKRK--VASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIR 201 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q I + Q + +L+E E+ Y + VGL Sbjct: 202 DEAVH-GYYIGYKYQKGIAQLTDAERMDMQDYTYDLLNELYDNEVEYTQSLYDR--VGLT 258 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 E+++++ N+ +G LF Sbjct: 259 E-DVEKFLRYNGNKALMNLGYPALF 282 >gi|238755711|ref|ZP_04617045.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia ruckeri ATCC 29473] gi|238706078|gb|EEP98461.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia ruckeri ATCC 29473] Length = 323 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 52/278 (18%), Positives = 113/278 (40%), Gaps = 39/278 (14%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W LT E+ + R +++ + + Sbjct: 31 TSNFWLPEKVPLSNDIPSWAM---LTAQEKQLTIRVFTGLTLLDTIQNTVGAPTLLQDAI 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQ 167 P +F EAVH+ ++ I ++L + D + + E ++ KA L + Sbjct: 88 TPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENTTLQKKAQIILNHYH 147 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D ++ + +F+ E FY+GF + K+ A+ + I Sbjct: 148 H----------DDPLKKKIASVFL-----ESFLFYSGFYLPMYFSSRAKLTNTADLIRLI 192 Query: 228 MRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 +RDE++H + G++ ++ ++ +E + + +L + E+ Y E Sbjct: 193 IRDEAVHGYYIGYKFQKGLEKVDAVR-------RQEIKNFTFELLQDLYDNEVRYTEEL- 244 Query: 281 PKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + G+ + ++++ + AN+ +G E LF E Sbjct: 245 ---YDGVGWSEDVKKFLHYNANKALMNLGYEALFPANE 279 >gi|254037718|ref|ZP_04871776.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 1_1_43] gi|226839342|gb|EEH71363.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 1_1_43] Length = 319 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 MPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|283835589|ref|ZP_06355330.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter youngae ATCC 29220] gi|291068801|gb|EFE06910.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter youngae ATCC 29220] Length = 319 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 35/185 (18%), Positives = 73/185 (39%), Gaps = 16/185 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + +++V ++A Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIVGAPALMA---DSI 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTTDVDAAYAWSEENNPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 +D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIILAHYASDNPLQKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLH 234 DE++H Sbjct: 191 DEAVH 195 >gi|300941043|ref|ZP_07155562.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 21-1] gi|300454207|gb|EFK17700.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 21-1] Length = 319 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 51/265 (19%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ +L Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIGAPSLLP---DAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E +E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISQAQREELKNFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|22550280|gb|AAN01603.1| ribonucleotide reductase small subunit [Human herpesvirus 2 strain G] Length = 342 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 68/304 (22%), Positives = 119/304 (39%), Gaps = 34/304 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE + + + L++ E + F ++++ LV N+ + Sbjct: 53 NRWLETETELVFVGDEEEDVSKLSEGELGFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 111 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREV--PSITAKANWALQYTQ 167 + Y + Q E VHS + I L D+ + R + P+I K +W Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTITHPAIRVKVDW------ 165 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 ++ D + + F+ ++ EG++F FA I L N + + I Sbjct: 166 ------LEARVRECDS--IPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLI 217 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETMPKGFV 285 RDE++H I N +L + +R + EA +EI + P Sbjct: 218 SRDEAVH------TTASCYIYNNYLGGHAKPEAARVYRLFREAVDIEIGFIRSQAPTDSS 271 Query: 286 GLNA---PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS---EVIDLKKEKNFFETR 339 L+ + E Y++F A+R I ++PL+ + P P S ++ K NFFE R Sbjct: 272 ILSPGALAAIENYVRFSADRLLGLIHMQPLYSASA-PAPDASFPLSLMSTDKHTNFFECR 330 Query: 340 VTEY 343 T Y Sbjct: 331 STSY 334 >gi|227502986|ref|ZP_03933035.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC 49725] gi|306836783|ref|ZP_07469743.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium accolens ATCC 49726] gi|227076047|gb|EEI14010.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC 49725] gi|304567329|gb|EFM42934.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium accolens ATCC 49726] Length = 329 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 56/279 (20%), Positives = 106/279 (37%), Gaps = 28/279 (10%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WE+ N W+P +VP+ +DL WK+ LT+ E+ R +++ Sbjct: 32 VWER---LTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGLTLLDTIQGTVGA 85 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 +++ AF E+VH+ ++ I +L P I W Sbjct: 86 ISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLA-----------STPMINDAFRW 134 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + + D + V + E FY+GF + K+ A Sbjct: 135 SEENENLQKKAKIILSYYNGDDPLKKK--VASTLLESFLFYSGFYLPMYFSSRAKLTNTA 192 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK---EFQQKSRTMLHEATLLEIAYAHE 278 + + I+RDE++H G + + + E L K E + + + E EI Y + Sbjct: 193 DIIRLIIRDEAVH---GYYIGYKFQQEYKKLDEKRQEELKDYTFDLAFELYDNEIDYTED 249 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + +G ++++++ AN+ + +G E LF E Sbjct: 250 LYDE--LGW-TEDVKRFLRYNANKALNNLGFEGLFPADE 285 >gi|121730673|ref|ZP_01682814.1| ATP-dependent Zn proteases [Vibrio cholerae V52] gi|121627739|gb|EAX60372.1| ATP-dependent Zn proteases [Vibrio cholerae V52] Length = 129 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 +E +Q+S + EA E +A G +GLN QY+++I N R +GLEP Sbjct: 18 AEECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPA 77 Query: 313 F-KYTENPFPWMS 324 + T NP PW++ Sbjct: 78 YPAATNNPIPWIN 90 >gi|329767978|ref|ZP_08259489.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341] gi|328838463|gb|EGF88071.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341] Length = 322 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 65/278 (23%), Positives = 108/278 (38%), Gaps = 32/278 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+ W L D ER K+ L ++ + + + H + Sbjct: 25 WVDTEFKVSKDIKSWNED--LNDKEREAYKKVLAGLTGLDTQQGDKGMPLVSLHTEDMRK 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS---ITAKANWALQYTQTLS 170 + E +H+ ++ I TSL + + + VPS + KA Y L Sbjct: 83 QAVYSFMGMMEQIHAKSYSTIFTSLIPSQETDYLLDEWVPSNPELQFKAKLIEDYYMKLF 142 Query: 171 SPSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 P T DL+ V V E FY+GF L L K+ E + I Sbjct: 143 KPEVPT----------YDLYMARVASVFLESYIFYSGFFYPLYLAGQGKVTTSGEIIRKI 192 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPK 282 + DE++H +F G D K P E Q+++ +++ L E+ Y + + Sbjct: 193 LLDETIHGSFTGFDAQELFKTLTP-----EEQERAEKEMYKLLLDLYENELKYTKDIYDE 247 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319 +GL + Y+++ ANR +G F+ E NP Sbjct: 248 --IGL-YEDVKDYVEYNANRALANLGYPGYFEDKEINP 282 >gi|294887656|ref|XP_002772196.1| ribonucleoside-diphosphate reductase small chain, putative [Perkinsus marinus ATCC 50983] gi|239876179|gb|EER04012.1| ribonucleoside-diphosphate reductase small chain, putative [Perkinsus marinus ATCC 50983] Length = 82 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + DL W++ LT +E+ IK L FFA+S+ +V N+ + PE Sbjct: 9 WTAEEIDLGQDLRDWET---LTKNEQHFIKNVLAFFAASDGIVMENLASKFSCEVQIPEA 65 Query: 114 RQYLLRQAFEEAVHSHT 130 R + Q E +HS T Sbjct: 66 RAFYGFQTGMETIHSET 82 >gi|294998842|gb|ADF58156.1| ribonucleoside-diphosphate reductase beta subunit [Pseudomonas phage JG004] Length = 348 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 58/252 (23%), Positives = 97/252 (38%), Gaps = 34/252 (13%) Query: 82 IKRNLGFFASSESLVANNIVLA-IYRHLSNPECR-QYLLRQAFEEAVHSHTFQYIITSLG 139 +K L F E +V + + R PE + + E AVH+ + I LG Sbjct: 73 VKTVLQLFLKYELIVGEEFWMGKVVRTFPRPEVKLAASILCMMELAVHAEFYNQINVVLG 132 Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 +D + Y++ P + + +W L S D++ + + +F + E Sbjct: 133 MDTDADYVAYKDDPELMGRMDW-------LESVL-------GDEDDVLSVIIFSLT-ETA 177 Query: 200 WFYTGFAQILSL--GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 ++ FA + S N + IA DE LH ++INQ E + Sbjct: 178 LLFSSFAILKSFQCNGYNDIPVIARGANQSAVDEDLHGVVSAEIINQYYAE----IGRPL 233 Query: 258 QQKSRTMLHEATLLEIAYAHE------TMPKGFVGLNAPSCEQYMQFIANRR---CHQIG 308 + +R + ++ YAHE +P G LN S E Y F+ R C ++G Sbjct: 234 SEDTRRVEKIRQAIDHVYAHECRIVDMAIPGG--ELNGESAENYKAFVRYRLNVWCRRLG 291 Query: 309 LEPLFKYTENPF 320 LE F+ + P Sbjct: 292 LEDHFENDDTPI 303 >gi|333001013|gb|EGK20583.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri K-272] gi|333015483|gb|EGK34822.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri K-227] Length = 319 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ LT E+ + R ++L N++ A L Sbjct: 27 TSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLLDTL--QNVIGAPSLMLD 81 Query: 110 --NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 82 ALTPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAP 130 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + + V E FY+GF + K+ A+ + I Sbjct: 131 LQRKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLI 188 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 189 IRDEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW- 246 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + N+ +G EPLF Sbjct: 247 --ADDVKAFLCYNTNKALMNLGYEPLF 271 >gi|320539491|ref|ZP_08039160.1| putative truncated ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Serratia symbiotica str. Tucson] gi|320030616|gb|EFW12626.1| putative truncated ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Serratia symbiotica str. Tucson] Length = 309 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 58/285 (20%), Positives = 111/285 (38%), Gaps = 45/285 (15%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + L + L + ++ V ++A P Sbjct: 33 NFWLPEKVPLSNDIPSWATLTAKEQQLTLRVFTGLTLLDTIQNTVGAPALMA---DALTP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTL 169 +F EAVH+ ++ I ++L D + + +E ++ KAN L + Sbjct: 90 HEEAVYSNISFMEAVHARSYSSIFSTLCQTSDVDDAYRWSQENHALQKKANLILTHYH-- 147 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 AD L V V E FY+GF + K+ A + I+R Sbjct: 148 -----------ADDPLLMK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTAHLIRLIIR 194 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 E++H + G++ ++ I+ ++ + + +LH+ E+ Y + Sbjct: 195 YEAVHGYYIGYKFQKGLERVDVIR-------RQQVKNVAFDLLHDLYDNEVCYTQDL--- 244 Query: 283 GFVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 + G+ + ++ + AN+ +G E LF P M EV Sbjct: 245 -YDGVGWTEDVKTFLHYNANKALMNLGYEALFP------PRMVEV 282 >gi|291618545|ref|YP_003521287.1| NrdF [Pantoea ananatis LMG 20103] gi|291153575|gb|ADD78159.1| NrdF [Pantoea ananatis LMG 20103] gi|327394924|dbj|BAK12346.1| ribonucleoside-diphosphate reductase 2 beta subunit NrdF [Pantoea ananatis AJ13355] Length = 319 Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust. Identities = 54/265 (20%), Positives = 102/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +DL W++ + + + L + ++++ + Sbjct: 27 TSNFWLPEKVPLSNDLPAWQTLDKQHQQLTIRVFTGLTLLDTIQNVLG---APGLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------HTSDVDAAYQWSEENQALQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + AD + + V E FY+GF + K+ A+ + I+R Sbjct: 133 NKAEIILTHYRADDPLKKK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E +E QQ + +L E+ Y G VG Sbjct: 191 DEAVH-GYYIGYKYQKALEQVDEGRREALQQFAIDLLLALYENEVVYTEALY--GDVGW- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G E LF Sbjct: 247 AEEVKTFLHYNANKALMNLGYEALF 271 >gi|331648397|ref|ZP_08349485.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M605] gi|331042144|gb|EGI14286.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M605] Length = 319 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 50/271 (18%), Positives = 105/271 (38%), Gaps = 33/271 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H + ++ I+Q + E E + + +L E E+ Y E + Sbjct: 191 DEAVHGYYIGYKYQKNLEKISQTRRE-------ELKSFAFDLLLELYDNELQYTDELYAE 243 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 244 TPW---ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|255324325|ref|ZP_05365446.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium tuberculostearicum SK141] gi|255298655|gb|EET77951.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium tuberculostearicum SK141] Length = 329 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 51/268 (19%), Positives = 100/268 (37%), Gaps = 19/268 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL WK+ LT+ E+ R +++ +++ Sbjct: 37 TGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGLTLLDTIQGTVGAISLLPDSQ 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 AF E+VH+ ++ I +L P I W+ + Sbjct: 94 TLHEEAVYTNIAFMESVHAKSYSNIFMTLA-----------STPMINDAFRWSEENENLQ 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + V + E FY+GF + K+ A+ + I+R Sbjct: 143 KKAKIILSYYKGDDPLKKK--VASTLLESFLFYSGFYLPMYFSSRAKLTNTADIIRLIIR 200 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE++H + Q + E ++ + +L++ EI Y + +G Sbjct: 201 DEAVHGYYIGYKFQQAYKQLDEEHQAELKEYTFDLLYDLYDNEIDYTEDLYDD--LGW-T 257 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++++++ AN+ + +G E LF E Sbjct: 258 EDVKRFLRYNANKALNNLGFEGLFPADE 285 >gi|157148214|ref|YP_001455533.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter koseri ATCC BAA-895] gi|157085419|gb|ABV15097.1| hypothetical protein CKO_04025 [Citrobacter koseri ATCC BAA-895] Length = 319 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 16/185 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + +++ A+ + Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAG---APALMQDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 AD + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIILQHYTADNPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLH 234 DE++H Sbjct: 191 DEAVH 195 >gi|270265355|ref|ZP_06193616.1| ribonucleoside-diphosphate reductase 2 subunit beta [Serratia odorifera 4Rx13] gi|270040759|gb|EFA13862.1| ribonucleoside-diphosphate reductase 2 subunit beta [Serratia odorifera 4Rx13] Length = 323 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 59/280 (21%), Positives = 107/280 (38%), Gaps = 31/280 (11%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W + LT E+ + R +++ A+ Sbjct: 31 TSNFWLPEKVPLSNDIPSWAT---LTPKEQQLTIRVFTGLTLLDTIQNTVGAPALIADAL 87 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P F EAVH+ ++ I ++L + P + W+ + Sbjct: 88 TPHEEAVYSNIGFMEAVHARSYSSIFSTLC-----------QTPDVDDAYRWSEENHALQ 136 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 +D L+ V V E FY+GF + K+ A+ + I+R Sbjct: 137 KKAHIILAHYRSDDPLLKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 194 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETMPKGFVGL 287 DE++H + I Q +E T+ Q K+ +L + E+ Y E + G+ Sbjct: 195 DEAVH-GYYIGYKFQKGLEKVDA-TRRQQVKNFAFDLLQDLYDNEVRYTEEL----YDGV 248 Query: 288 N-APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 + ++ + AN+ +G E LF P M+EV Sbjct: 249 GWTEDVKTFLHYNANKALMNLGYEALFP------PAMAEV 282 >gi|30960831|gb|AAP39226.1| UL40 [Human herpesvirus 1] Length = 307 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 65/304 (21%), Positives = 116/304 (38%), Gaps = 39/304 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 23 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W + Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY--------AHET 279 RDE++H + N + K ++ + +A +EI + +H Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPERVYGLFRQAVEIEIGFIRSQAPTDSHIL 240 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 P V + E Y++F A+R I ++PLF + ++ K NFFE R Sbjct: 241 SPAALVAI-----ENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECR 295 Query: 340 VTEY 343 T Y Sbjct: 296 STSY 299 >gi|253772463|ref|YP_003035294.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162613|ref|YP_003045721.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli B str. REL606] gi|297519661|ref|ZP_06938047.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli OP50] gi|242378238|emb|CAQ33013.1| nrdF, subunit of ribonucleoside-diphosphate reductase 2, beta subunit dimer and ribonucleoside-diphosphate reductase 2 [Escherichia coli BL21(DE3)] gi|253323507|gb|ACT28109.1| Ribonucleoside-diphosphate reductase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974514|gb|ACT40185.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli B str. REL606] gi|253978681|gb|ACT44351.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli BL21(DE3)] Length = 319 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 50/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G +PLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYKPLF 271 >gi|85726187|gb|ABC79616.1| ribonucleotide reductase beta subunit [Borrelia hermsii DAH] Length = 321 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 64/296 (21%), Positives = 120/296 (40%), Gaps = 25/296 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ E+P+ DD +W + +G +ER + ++ LG ++ + + + + N + Sbjct: 30 WVDEEIPISDDKLVWNTLDG---EERDVYEKVLGGLTLLDTEQGSVGMPRLALAIDNLDY 86 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + L E +H+ ++ I +SL + I W Y Sbjct: 87 KPVLGFMGAMEHMHAKSYSSIFSSL-----------SNIDRIDHIFGWVKTYRNFQDKLD 135 Query: 174 FTTGTKDA--DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 G ++ D+ L V E FY+GF L L KMV E I+RDE Sbjct: 136 LILGKYNSIHDRMSLYKALCTSVFLETFLFYSGFFYPLYLAGQGKMVNSGEIINLILRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHETMPKGFVGLNAP 290 S+H F + ++ Q + + F Q+ T++ E LE AY + +GL Sbjct: 196 SVHGVF-VGLLAQEEFNKMTFKEQAFAQREATLILERLYYLESAYTKDLYSS--IGLEG- 251 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343 + + ++++ A++ +G + F + NP ++ + K +FF T+ Y Sbjct: 252 AVDVFVRYNADKALMNLGFDSAFNIRDIDVNPLV-LNGLRTNTKTHDFFSTKGNGY 306 >gi|196040724|ref|ZP_03108023.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus NVH0597-99] gi|196028514|gb|EDX67122.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus NVH0597-99] Length = 193 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 12/178 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+ + D W L+ +E++ KR LG ++ + + HL N + Sbjct: 26 WTEEEIAVSSDKNTWVQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQA 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSS 171 + L E VH+ ++ +I T+L +E E+F+ P + KA Y + L Sbjct: 83 KSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGIITSYYRRLLK 142 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 T ++ L V V E FY+GF L L K+ E I+R Sbjct: 143 SEVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIR 193 >gi|332878859|ref|ZP_08446574.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683210|gb|EGJ56092.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 319 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 71/317 (22%), Positives = 120/317 (37%), Gaps = 27/317 (8%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y E + + W+ +EV D+ +KS L+ E+ IKR L A E Sbjct: 12 PFEYPEVMEFVNAMHKSFWVHSEVEFTADVQDFKS--NLSAVEQEAIKRALLGIAQVEVS 69 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +Y PE A E HS + ++ LG + F EVP Sbjct: 70 V-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLLEVPVF 126 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-A 214 + T+ ++A ++ + F ++ E ++ FA +LS R Sbjct: 127 KER--------NTVLKEYLAKNRENA----MERILFFTLIIENASLFSQFATVLSFARFK 174 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE-- 272 + +A + DE LH N GI ++ +I E P + K + + + +LE Sbjct: 175 GYLKNVANIIAWTSVDEQLHANAGIYILKKIFEERPEMKAKA-EADATDFIRNYIVLEDK 233 Query: 273 -IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSEVID 328 + + E F G YM++ + Q+GL F + + P W E + Sbjct: 234 MLDWIFEQGELDFFG--KKDLANYMRYRLDDSLTQLGLTKPFNISADEAKPMMWFEEEVF 291 Query: 329 LKKEKNFFETRVTEYQQ 345 + +FF R T Y + Sbjct: 292 SNELDDFFAKRPTAYTK 308 >gi|259046997|ref|ZP_05737398.1| ribonucleoside-diphosphate reductase 2, beta subunit [Granulicatella adiacens ATCC 49175] gi|259036316|gb|EEW37571.1| ribonucleoside-diphosphate reductase 2, beta subunit [Granulicatella adiacens ATCC 49175] Length = 346 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 60/291 (20%), Positives = 122/291 (41%), Gaps = 36/291 (12%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D NQ+ + WEK W+ T +P+ +DL W++ L+ E+ ++ + G Sbjct: 36 DWNQVEDMIDKLTWEK---LTEQFWLDTRIPVSNDLDDWRT---LSPAEKDVVGKVFGGL 89 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++L + + ++ F E+VH+ ++ I ++L + E+ +++ Sbjct: 90 TLLDTLQSEEGASLMKDYVRTQHEEAVWNNIQFMESVHAKSYSTIFSTLHT-KAEIEDIF 148 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 + N LQ+ + + + KDA + + V + E FY+GF L Sbjct: 149 EWTNN-----NEYLQFKAKKINEIYQS--KDALK-----MKVASTMLETFLFYSGFFTPL 196 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSR 262 NK+ +AE + I+RDES+H + G + +++ + E +W Sbjct: 197 YYLGNNKLANVAEIIKLIIRDESVHGTYTGYKFQQGYNELSEQEQEEMKMWV-------Y 249 Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + E E+ Y + VG + ++++ AN+ +G +PLF Sbjct: 250 NLCLELYQNEVKYTQSIYDQ--VGW-TEKVKVFIRYNANKALQNLGFDPLF 297 >gi|281179683|dbj|BAI56013.1| ribonucleoside-diphosphate reductase beta subunit [Escherichia coli SE15] Length = 319 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 50/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E +E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISQARREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|241888586|ref|ZP_04775893.1| ribonucleoside-diphosphate reductase, beta subunit [Gemella haemolysans ATCC 10379] gi|241864609|gb|EER68984.1| ribonucleoside-diphosphate reductase, beta subunit [Gemella haemolysans ATCC 10379] Length = 322 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 65/278 (23%), Positives = 108/278 (38%), Gaps = 32/278 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+ W L D ER K+ L ++ + + + H + Sbjct: 25 WVDTEFKVSKDIKSWNED--LNDKEREAYKKVLAGLTGLDTQQGDKGMPLVSLHTEDMRK 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS---ITAKANWALQYTQTLS 170 + E +H+ ++ I TSL + + + VPS + KA Y L Sbjct: 83 QAVYSFMGMMEQIHAKSYSTIFTSLIPSQETDYLLDEWVPSNPELQYKAKLIEDYYMKLF 142 Query: 171 SPSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 P T DL+ V V E FY+GF L L K+ E + I Sbjct: 143 KPEVPT----------YDLYMARVASVFLESYIFYSGFFYPLYLAGQGKVTTSGEVIRKI 192 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL----EIAYAHETMPK 282 + DE++H +F G D K T E Q+++ +++ L E+ Y + + Sbjct: 193 LLDETIHGSFTGFDAQEVFKT-----LTAEEQERAEKEMYKLLLDLYENELVYTKDIYSE 247 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319 +GL + Y+++ ANR +G F+ E NP Sbjct: 248 --IGL-YEEVKDYVEYNANRALANLGYPGYFEDKEINP 282 >gi|312965591|ref|ZP_07779821.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 2362-75] gi|312289740|gb|EFR17630.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 2362-75] Length = 319 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 56/301 (18%), Positives = 115/301 (38%), Gaps = 24/301 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E +E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISQAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 A + ++ + AN+ +G EPLF NP + + + +FF + + Y Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSSSGSSYVM 306 Query: 346 G 346 G Sbjct: 307 G 307 >gi|325496274|gb|EGC94133.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia fergusonii ECD227] Length = 319 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSAAEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDNPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q + L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNLGKTSLEQREELKNFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|331654159|ref|ZP_08355159.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M718] gi|331047541|gb|EGI19618.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M718] Length = 319 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 50/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E +E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISQAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|326536370|ref|YP_004300811.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133] gi|299483451|gb|ADJ19545.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133] Length = 382 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 63/300 (21%), Positives = 118/300 (39%), Gaps = 37/300 (12%) Query: 54 WMPTEVPMQDDLA----LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 W P EV + D A LW++ G + + NLG+ +S+ + + S Sbjct: 47 WRPEEVNLTTDKAQFDKLWETNRGHL---QTIFTDNLGYQILMDSVQGRAPAIVLASICS 103 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + +++ F E +HS ++ +II +L D ++F+ I A+A + L Sbjct: 104 DVALETWIMTWTFSETIHSRSYTHIIRNLYSDPSKIFDGVLANKEIMARATSICERYDLL 163 Query: 170 --------SSPSFTTGTKDADQEFLQDLFV-FYVV--FEGMWFYTGFAQILSLGRANK-M 217 + T +E + L++ + + E + FY F + K M Sbjct: 164 HKLIILYQADKIRGVATPGQLREVKKALYLCLHAINALEAIRFYVSFISTWNFFENMKIM 223 Query: 218 VGIAEQYQYIMRDESLH----------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 G + Q+I RDE+LH +N GID +I + ++++ M E Sbjct: 224 EGNMKIMQFIARDENLHHQGTRYILQQMNKGIDGTEWREI------ALDCKEEAEAMFLE 277 Query: 268 ATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSE 325 E A+A G GL +++ + +GL P+ + +P PW+++ Sbjct: 278 VRAQERAWATYVYRNGHPDGLTTDLVHEFIDYQLVPAMKNVGLNCPIERPKRHPLPWVNK 337 >gi|293415927|ref|ZP_06658567.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] gi|291432116|gb|EFF05098.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] Length = 319 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E +E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISQAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|215487997|ref|YP_002330428.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O127:H6 str. E2348/69] gi|215266069|emb|CAS10489.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli O127:H6 str. E2348/69] Length = 319 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 50/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E +E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISQAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|241206478|ref|YP_002977574.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860368|gb|ACS58035.1| Ribonucleoside-diphosphate reductase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 324 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 61/268 (22%), Positives = 111/268 (41%), Gaps = 27/268 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + LT E+ + R +++ + + + Sbjct: 32 TGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLLDTIQNGVGSIRLMEDAA 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 L +F EAVH+ ++ I ++L ++ + YR ++ N LQ L Sbjct: 89 TSHEEAVLSNVSFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSAL 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + +G + V V E FY+GF + K+ A+ + I+R Sbjct: 143 IMEQYRSGDPLKKK-------VASVFLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIR 195 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFV 285 DE++H + I Q +E E +Q+ + E LLE+ A E + G V Sbjct: 196 DEAVH-GYYIGYKFQRGLER---LGDERKQEIKDFAFE-LLLELYDNEAKYTEALYDG-V 249 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLF 313 GL ++++ + AN+ +G E LF Sbjct: 250 GLT-EDVKKFLHYNANKALMNLGYEALF 276 >gi|238790129|ref|ZP_04633906.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia frederiksenii ATCC 33641] gi|238721798|gb|EEQ13461.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia frederiksenii ATCC 33641] Length = 323 Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust. Identities = 39/185 (21%), Positives = 78/185 (42%), Gaps = 20/185 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + L +E+ + R +++ A+ + P Sbjct: 33 NFWLPEKVPLSNDIPSWAT---LAPNEQQLTIRVFTGLTLLDTIQNTLGAPALIKDAITP 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 +F EAVH+ ++ I ++L + D + + E + KA+ LQ+ Sbjct: 90 HEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENGPLQKKADIILQHYHN- 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D ++ + +F+ E FY+GF + K+ A+ + I+R Sbjct: 149 ---------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIR 194 Query: 230 DESLH 234 DE++H Sbjct: 195 DEAVH 199 >gi|24113980|ref|NP_708490.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 2a str. 301] gi|30064043|ref|NP_838214.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 2a str. 2457T] gi|110806691|ref|YP_690211.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 5 str. 8401] gi|24053093|gb|AAN44197.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella flexneri 2a str. 301] gi|30042299|gb|AAP18024.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella flexneri 2a str. 2457T] gi|110616239|gb|ABF04906.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella flexneri 5 str. 8401] gi|281602052|gb|ADA75036.1| Ribonucleoside-diphosphate reductase 2, beta chain [Shigella flexneri 2002017] gi|313648326|gb|EFS12770.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri 2a str. 2457T] gi|332753393|gb|EGJ83773.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri 4343-70] gi|332753901|gb|EGJ84276.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri K-671] gi|332755661|gb|EGJ86024.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri 2747-71] gi|332765626|gb|EGJ95839.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Shigella flexneri 2930-71] gi|332999413|gb|EGK18998.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri VA-6] gi|333000691|gb|EGK20268.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri K-218] gi|333015924|gb|EGK35260.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri K-304] Length = 319 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + N+ +G EPLF Sbjct: 247 ADDVKAFLCYNTNKALMNLGYEPLF 271 >gi|329296713|ref|ZP_08254049.1| ribonucleoside-diphosphate reductase [Plautia stali symbiont] Length = 319 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 40/189 (21%), Positives = 80/189 (42%), Gaps = 24/189 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 NN W+P +VP+ +DL W+S + + L + ++++ + Sbjct: 27 TNNFWLPEKVPLSNDLPAWQSLAPQQQQLTIRVFTGLTLLDTIQNVIG---APGLMEDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL----GLDEGELFNMYREVPSITAKANWALQY 165 P L +F EAVH+ ++ I ++L +D L++ E ++ KA L++ Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLCNTADVDAAYLWS--EENAALQNKAKIVLEH 141 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 + D ++ + +F+ E FY+GF + K+ A+ + Sbjct: 142 YR----------ASDPLKKKIASVFL-----ESFLFYSGFWLPMYWSSRGKLTNTADLIR 186 Query: 226 YIMRDESLH 234 I+RDE++H Sbjct: 187 LIIRDEAVH 195 >gi|213965886|ref|ZP_03394077.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] gi|213951464|gb|EEB62855.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] Length = 338 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 16/185 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + N L + + L + + V +++ Sbjct: 46 TGNFWLPEKVPLSNDIKSWNTLNALEQRTTMRVFTGLTMLDTIQGTVG---AVSLIPDAL 102 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P AF E+VH+ ++ I +L P I W + Sbjct: 103 TPHEEAVYTNIAFMESVHAKSYSSIFQTLA-----------STPEIQDAFRWGEENEYLQ 151 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D Q V + E FY+GF + K+ A+ + I+R Sbjct: 152 KKAKIILDYYEGDNP--QKKKVASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIR 209 Query: 230 DESLH 234 DE++H Sbjct: 210 DEAVH 214 >gi|30960813|gb|AAP39214.1| UL40 [Human herpesvirus 1] gi|30960819|gb|AAP39218.1| UL40 [Human herpesvirus 1] Length = 307 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 64/299 (21%), Positives = 115/299 (38%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 23 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W + Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K ++ + +A +EI + P L Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPERVYGLFRQAVEIEIGFIRSQAPTDSHIL 240 Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299 >gi|330908707|gb|EGH37221.1| ribonucleotide reductase of class 1b (aerobic), beta subunit [Escherichia coli AA86] Length = 319 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 50/271 (18%), Positives = 105/271 (38%), Gaps = 33/271 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H + ++ I+Q + E E + + +L E E+ Y E + Sbjct: 191 DEAVHGYYIGYKYQKNLEKISQARHE-------ELKSFAFDLLLELYDNELQYTDELYAE 243 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 244 TPW---ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|30960429|gb|AAP38958.1| UL40 [Human herpesvirus 1] gi|30960468|gb|AAP38984.1| UL40 [Human herpesvirus 1] Length = 307 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 65/304 (21%), Positives = 115/304 (37%), Gaps = 39/304 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 23 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W + Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY--------AHET 279 RDE++H + N + K + + +A +EI + +H Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 P V + E Y++F A+R I ++PLF + ++ K NFFE R Sbjct: 241 SPAALVAI-----ENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECR 295 Query: 340 VTEY 343 T Y Sbjct: 296 STSY 299 >gi|331684294|ref|ZP_08384886.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H299] gi|331077909|gb|EGI49115.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H299] Length = 319 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 50/271 (18%), Positives = 104/271 (38%), Gaps = 33/271 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIHLIIR 190 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H + ++ I+Q + E E + + +L E E+ Y E + Sbjct: 191 DEAVHGYYIGYKYQKNLEKISQARRE-------ELKSFAFDLLLELYDNELQYTDELYAE 243 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 244 TPW---ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|118470345|ref|YP_884771.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium smegmatis str. MC2 155] gi|238055307|sp|A0QPD3|RIR2H_MYCS2 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|118171632|gb|ABK72528.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium smegmatis str. MC2 155] Length = 320 Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust. Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 25/210 (11%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W++ LT+ ER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFSRDRADWEA---LTEREREYATRLCAEFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I ++ R YL + AFEEA H+ F+ + ++G+ + +L ++ EV Sbjct: 70 AVTKDIQPFMSAMRAEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGVTD-DLHSLIEEV 128 Query: 153 PSITAKANWALQYTQTLSSP--SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA--QI 208 P+ + + + L + + T+ A Q ++ V+ V EGM TG+ Sbjct: 129 PA------YVQIFCEELPAALEALTSDPSPAAQ--VRASVVYNHVVEGMLALTGYYAWHR 180 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + + R + G+ E + I DE H+ +G Sbjct: 181 ICVDR-GILPGMQELVRRIGDDERRHMAWG 209 >gi|326804460|ref|YP_004327264.1| ribonucleotide-diphosphate reductase beta subunit [Pseudomonas phage PAK_P1] gi|290873873|gb|ADD65076.1| ribonucleotide-diphosphate reductase beta subunit [Pseudomonas phage PAK_P1] Length = 348 Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust. Identities = 58/252 (23%), Positives = 96/252 (38%), Gaps = 34/252 (13%) Query: 82 IKRNLGFFASSESLVANNIVLA-IYRHLSNPECR-QYLLRQAFEEAVHSHTFQYIITSLG 139 +K L F E +V + + R PE + + E AVH+ + I LG Sbjct: 73 VKTVLQLFLKYELIVGEEFWMGKVVRTFPRPEVKLAASILCMMELAVHAEFYNQINVVLG 132 Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 +D + Y++ P + + W L S D++ + + +F + E Sbjct: 133 MDTDADYVAYKDDPELMGRMEW-------LESVL-------GDEDDVLSVIIFSLT-ETA 177 Query: 200 WFYTGFAQILSL--GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 ++ FA + S N + IA DE LH ++INQ E + Sbjct: 178 LLFSSFAILKSFQCNGYNDIPVIARGANQSAVDEDLHGVVSAEIINQYYAE----IGRPL 233 Query: 258 QQKSRTMLHEATLLEIAYAHE------TMPKGFVGLNAPSCEQYMQFIANRR---CHQIG 308 + +R + ++ YAHE +P G LN S E Y F+ R C ++G Sbjct: 234 SEDTRRVEKIRQAIDHVYAHECRIVDMAIPGG--ELNGESAENYKAFVRYRLNVWCRRLG 291 Query: 309 LEPLFKYTENPF 320 LE F+ + P Sbjct: 292 LEDHFENDDTPI 303 >gi|293394770|ref|ZP_06639061.1| ribonucleotide-diphosphate reductase subunit beta [Serratia odorifera DSM 4582] gi|291422721|gb|EFE95959.1| ribonucleotide-diphosphate reductase subunit beta [Serratia odorifera DSM 4582] Length = 319 Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust. Identities = 63/281 (22%), Positives = 112/281 (39%), Gaps = 33/281 (11%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W + LT E+ + R +++ + Sbjct: 27 TSNFWLPEKVPLSNDIPSWAT---LTAKEQQLTIRVFTGLTLLDTIQNTVGAPTLIDDAI 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQ 167 P +F EAVH+ ++ I ++L D + + E ++ KA+ L + + Sbjct: 84 TPHEEAVYSNISFMEAVHARSYSSIFSTLCQTRDVDDAYRWSEENRALQKKADIILAHYR 143 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 + D L+ V V E FY+GF + K+ A+ + I Sbjct: 144 S-------------DDPLLKK--VASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 188 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHETMPKGFV 285 +RDE++H + I Q +E T+ Q KS +L + E+ Y E V Sbjct: 189 IRDEAVH-GYYIGYKFQKGLEQVSA-TRRQQVKSFAFDLLQDLYDNEVRYTEELYDD--V 244 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 G + ++ + AN+ +G E LF P M+EV Sbjct: 245 GW-TEDVKTFLHYNANKALMNLGYEALFP------PSMAEV 278 >gi|259907588|ref|YP_002647944.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia pyrifoliae Ep1/96] gi|224963210|emb|CAX54694.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia pyrifoliae Ep1/96] gi|283477430|emb|CAY73346.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia pyrifoliae DSM 12163] Length = 319 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 64/276 (23%), Positives = 115/276 (41%), Gaps = 43/276 (15%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W S N + ++L I+ G ++ I L Sbjct: 27 TSNFWLPEKVPLSNDIPSWNSLNA--EQQQLTIRVFTGL----------TLLDTIQNTLG 74 Query: 110 NPECRQYLLRQ---------AFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAK 158 P L Q +F EAVH+ ++ I ++L D + + + K Sbjct: 75 APALMADALTQHEEAVMSNISFMEAVHARSYSSIFSTLCNTSDVDAAYAWSEDNAPLQGK 134 Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 A LQ+ D ++ + +F+ E FY+GF + K+ Sbjct: 135 AQIILQHYY----------HNDPLKKKIASVFL-----ESFLFYSGFYLPVYWSSRGKLT 179 Query: 219 GIAEQYQYIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 A+ + I++DE++H + G ++ E P L +E QQ + +L E E+AY Sbjct: 180 NTADLIRLIIKDEAVHGYYIGYKYQKALEKETP-LRKEELQQFAIELLLELYENELAYT- 237 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E + G VG ++++ + AN+ +G E LF Sbjct: 238 EALYAG-VGWQ-EDVKKFLHYNANKALMNLGYEALF 271 >gi|159184148|ref|NP_353105.2| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium tumefaciens str. C58] gi|159139483|gb|AAK85890.2| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium tumefaciens str. C58] Length = 324 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 57/271 (21%), Positives = 115/271 (42%), Gaps = 33/271 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W + L +E+ + R +++ + + + Sbjct: 32 TSNFWLPEKVPLSNDIPSWGT---LKPEEQELTIRVFTGLTLLDTIQNGVGAVRLMPDSA 88 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L ++ + YR ++ N LQ + Sbjct: 89 TPHEEAVLSNISFMEAVHARSYSSIFSTL-CSTPDVDDAYR-----WSEENEFLQRKSAI 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + +G D ++ + +F+ E FY+GF + K+ A+ + I+R Sbjct: 143 IMREYDSG--DPLKKKIASVFL-----ESFLFYSGFYLPMFWSSRAKLTNTADLIRLIIR 195 Query: 230 DESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DE++H +D + + + +E + + +L E E Y E + Sbjct: 196 DEAVHGYYIGYKFQRALDRLGEAQ-------RQEIKDFAFDLLLELYDNEAKYT-EDLYD 247 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 G VGL +Q++ + AN+ +G E LF Sbjct: 248 G-VGLTE-DVKQFLHYNANKALMNLGYEALF 276 >gi|30960420|gb|AAP38952.1| UL40 [Human herpesvirus 1] gi|30960423|gb|AAP38954.1| UL40 [Human herpesvirus 1] gi|30960426|gb|AAP38956.1| UL40 [Human herpesvirus 1] gi|30960465|gb|AAP38982.1| UL40 [Human herpesvirus 1] gi|30960525|gb|AAP39022.1| UL40 [Human herpesvirus 1] Length = 307 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 23 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W + Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K + + +A +EI + P L Sbjct: 185 SRDEAVHTTASCYIYNNYLSGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240 Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299 >gi|317495971|ref|ZP_07954333.1| ribonucleotide reductase [Gemella moribillum M424] gi|316913875|gb|EFV35359.1| ribonucleotide reductase [Gemella moribillum M424] Length = 322 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 65/274 (23%), Positives = 106/274 (38%), Gaps = 24/274 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+ W L D ER K+ L ++ + + + H + Sbjct: 25 WVDTEFKVSKDIKSWNED--LNDKERDAYKKVLAGLTGLDTQQGDKGMPLVSLHTEDMRK 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS---ITAKANWALQYTQTLS 170 + E +H+ ++ I TSL + + + VP+ + KA Y L Sbjct: 83 QAVYSFMGMMEQMHAKSYSTIFTSLIPSKETDYLLDEWVPNNEELQYKAQLIESYYLKLF 142 Query: 171 SPSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 P T DL+ V V E FY+GF L L K+ E + I Sbjct: 143 KPEVPT----------YDLYMARVASVFLESYIFYSGFFYPLYLAGQGKLTTSGEIIRKI 192 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 + DE++H +F G D K P K ++ T+L + E+ Y + G +G Sbjct: 193 LLDETIHGSFTGFDAQEIFKTLTPEEQEKA-NKEMYTLLLDLYENELKYTKDIY--GEIG 249 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319 L + Y+++ ANR +G F+ E NP Sbjct: 250 L-FEEVKDYVEYNANRALANLGYPGYFEDKEINP 282 >gi|120404438|ref|YP_954267.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium vanbaalenii PYR-1] gi|238055311|sp|A1TAR1|RIR2H_MYCVP RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|119957256|gb|ABM14261.1| ribonucleotide reductase [Mycobacterium vanbaalenii PYR-1] Length = 312 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 15/189 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P ++ D A W+S LTD ER R F + E V +I +A R Sbjct: 32 WDPADIDFSRDRADWES---LTDLERDWATRLCAEFIAGEEAVTQDIQPFMAAMRAEGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 YL + AFEEA H+ F+ + ++G+ E +L E+P+ + + + L + Sbjct: 89 GDEMYLTQFAFEEAKHTQVFRMWLDAVGITE-DLQGYLDELPA------YCQMFYEELPA 141 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA--QILSLGRANKMVGIAEQYQYIMR 229 T + ++ + V EGM TG+ + + R + G+ E + I Sbjct: 142 SLDALATDPSPAAQVRASVTYNHVIEGMMALTGYYAWHRICVDR-GILPGMQELVRRIGD 200 Query: 230 DESLHLNFG 238 DE H+ +G Sbjct: 201 DERRHMAWG 209 >gi|240168452|ref|ZP_04747111.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium kansasii ATCC 12478] Length = 314 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 33/282 (11%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ + W + LTD ER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFSREREDW---DRLTDTERDYAIRLCAQFVAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I +A R YL + AFEEA H+ F+ + S+G+ G+L ++ Sbjct: 70 AVTEDIQPFMAAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDSVGV-TGDLHGYLDDL 128 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 PS + + + + LS + TT A Q ++ + + EGM TG+ + Sbjct: 129 PSY--RQMFYDELPECLS--ALTTDPSPAAQ--VRASVTYNHIVEGMLALTGYYAWHKIC 182 Query: 213 RANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 ++ G+ ++I DE H+ +G + N WT F+++ + Sbjct: 183 VERGILPGMQRLVRHISDDERRHMAWGTFTCRRHVAANDANWTV-FEERMNEL------- 234 Query: 272 EIAYAHETMPKGFVGLNAP-----SCEQYMQFIANRRCHQIG 308 I A + GF P S E++M + +++ + G Sbjct: 235 -IPLALQLTQDGFALYGDPMPFDLSVEEFMTYSSDKGMRRFG 275 >gi|226311199|ref|YP_002771093.1| hypothetical protein BBR47_16120 [Brevibacillus brevis NBRC 100599] gi|226094147|dbj|BAH42589.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 297 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 41/202 (20%), Positives = 91/202 (45%), Gaps = 13/202 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHLSNPE 112 W P ++ D + + N +E L R GF E++ + + ++ + E Sbjct: 34 WNPQDIDFTQDREDYANMNPEQKEETL--GRIAGFLGGEEAVTLDLLPLIMVIAEEGRLE 91 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172 +L FEEA H+ F+ ++ ++G + G+L + + +V + + + L + Sbjct: 92 EEMFLTTFLFEEAKHTEFFRLVLDNIG-ESGDLHHFHDDV--------YKRIFHEILPNA 142 Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIMRDE 231 T + + + V+ + EG+ TG+ A +L + M G+ + Y+ DE Sbjct: 143 LHRLLTDKSPEAIAEASTVYNMFVEGVLAETGYYAFYEALSKTGLMPGLMQGIGYLKTDE 202 Query: 232 SLHLNFGIDVINQIKIENPHLW 253 S H+++G ++ ++ E+ H++ Sbjct: 203 SRHISYGTFLLQRLICEHRHIY 224 >gi|26249071|ref|NP_755111.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli CFT073] gi|227888210|ref|ZP_04006015.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 83972] gi|300986153|ref|ZP_07177743.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 45-1] gi|301050518|ref|ZP_07197394.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 185-1] gi|26109478|gb|AAN81681.1|AE016765_83 Ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli CFT073] gi|227834850|gb|EEJ45316.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 83972] gi|300297774|gb|EFJ54159.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 185-1] gi|300407907|gb|EFJ91445.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 45-1] gi|307554652|gb|ADN47427.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli ABU 83972] gi|315290985|gb|EFU50350.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 153-1] Length = 319 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAILSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E +E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISQARREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A ++ + AN+ +G EPLF Sbjct: 247 ADDVTAFLCYNANKALMNLGYEPLF 271 >gi|290766061|gb|ADD60039.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1] Length = 340 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 56 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 111 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W + Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 171 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 172 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K + + +A +EI + P L Sbjct: 218 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273 Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 332 >gi|41409770|ref|NP_962606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. paratuberculosis K-10] gi|81413257|sp|Q73TP6|RIR2H_MYCPA RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|41398602|gb|AAS06222.1| NrdB [Mycobacterium avium subsp. paratuberculosis K-10] Length = 311 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ LTDDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWNPADIDFSRDRADWER---LTDDERSYATRLCAEFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I +A R YL + AFEEA H F+ + ++G+ + +L + +V Sbjct: 70 SVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTD-DLHHFLDDV 128 Query: 153 PS 154 PS Sbjct: 129 PS 130 >gi|284922618|emb|CBG35706.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli 042] Length = 319 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 54/270 (20%), Positives = 102/270 (37%), Gaps = 31/270 (11%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ +L Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQKLTMRVFTGLTLLDTLQNVIGAPSLLP---DAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT---LLEIAYAHETMPKGFVG 286 DE++H + I Q + K+ Q R L LLE+ Y +E + Sbjct: 191 DEAVH-GYYIGYKYQKNM-------KKISQAQREELKSFAFDLLLEL-YDNELQYTDELY 241 Query: 287 LNAPSCEQYMQFI---ANRRCHQIGLEPLF 313 P + F+ AN+ +G EPLF Sbjct: 242 AETPWADDVKAFLCYNANKALMNLGYEPLF 271 >gi|118465897|ref|YP_884058.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium 104] gi|254777375|ref|ZP_05218891.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. avium ATCC 25291] gi|238055303|sp|A0QMC0|RIR2H_MYCA1 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|118167184|gb|ABK68081.1| ribonucleotide-diphosphate reductase beta subunit [Mycobacterium avium 104] Length = 311 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ LTDDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWNPADIDFSRDRADWER---LTDDERSYATRLCAEFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I +A R YL + AFEEA H F+ + ++G+ + +L + +V Sbjct: 70 SVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTD-DLHHFLDDV 128 Query: 153 PS 154 PS Sbjct: 129 PS 130 >gi|30960231|gb|AAP38826.1| UL40 [Human herpesvirus 1] gi|30960234|gb|AAP38828.1| UL40 [Human herpesvirus 1] gi|30960237|gb|AAP38830.1| UL40 [Human herpesvirus 1] gi|30960240|gb|AAP38832.1| UL40 [Human herpesvirus 1] gi|30960243|gb|AAP38834.1| UL40 [Human herpesvirus 1] gi|30960246|gb|AAP38836.1| UL40 [Human herpesvirus 1] gi|30960249|gb|AAP38838.1| UL40 [Human herpesvirus 1] gi|30960252|gb|AAP38840.1| UL40 [Human herpesvirus 1] gi|30960255|gb|AAP38842.1| UL40 [Human herpesvirus 1] gi|30960258|gb|AAP38844.1| UL40 [Human herpesvirus 1] gi|30960261|gb|AAP38846.1| UL40 [Human herpesvirus 1] gi|30960264|gb|AAP38848.1| UL40 [Human herpesvirus 1] gi|30960267|gb|AAP38850.1| UL40 [Human herpesvirus 1] gi|30960270|gb|AAP38852.1| UL40 [Human herpesvirus 1] gi|30960273|gb|AAP38854.1| UL40 [Human herpesvirus 1] gi|30960276|gb|AAP38856.1| UL40 [Human herpesvirus 1] gi|30960279|gb|AAP38858.1| UL40 [Human herpesvirus 1] gi|30960282|gb|AAP38860.1| UL40 [Human herpesvirus 1] gi|30960285|gb|AAP38862.1| UL40 [Human herpesvirus 1] gi|30960288|gb|AAP38864.1| UL40 [Human herpesvirus 1] gi|30960291|gb|AAP38866.1| UL40 [Human herpesvirus 1] gi|30960294|gb|AAP38868.1| UL40 [Human herpesvirus 1] gi|30960297|gb|AAP38870.1| UL40 [Human herpesvirus 1] gi|30960300|gb|AAP38872.1| UL40 [Human herpesvirus 1] gi|30960303|gb|AAP38874.1| UL40 [Human herpesvirus 1] gi|30960306|gb|AAP38876.1| UL40 [Human herpesvirus 1] gi|30960309|gb|AAP38878.1| UL40 [Human herpesvirus 1] gi|30960312|gb|AAP38880.1| UL40 [Human herpesvirus 1] gi|30960315|gb|AAP38882.1| UL40 [Human herpesvirus 1] gi|30960318|gb|AAP38884.1| UL40 [Human herpesvirus 1] gi|30960321|gb|AAP38886.1| UL40 [Human herpesvirus 1] gi|30960324|gb|AAP38888.1| UL40 [Human herpesvirus 1] gi|30960327|gb|AAP38890.1| UL40 [Human herpesvirus 1] gi|30960330|gb|AAP38892.1| UL40 [Human herpesvirus 1] gi|30960333|gb|AAP38894.1| UL40 [Human herpesvirus 1] gi|30960336|gb|AAP38896.1| UL40 [Human herpesvirus 1] gi|30960339|gb|AAP38898.1| UL40 [Human herpesvirus 1] gi|30960342|gb|AAP38900.1| UL40 [Human herpesvirus 1] gi|30960345|gb|AAP38902.1| UL40 [Human herpesvirus 1] gi|30960348|gb|AAP38904.1| UL40 [Human herpesvirus 1] gi|30960351|gb|AAP38906.1| UL40 [Human herpesvirus 1] gi|30960354|gb|AAP38908.1| UL40 [Human herpesvirus 1] gi|30960357|gb|AAP38910.1| UL40 [Human herpesvirus 1] gi|30960360|gb|AAP38912.1| UL40 [Human herpesvirus 1] gi|30960363|gb|AAP38914.1| UL40 [Human herpesvirus 1] gi|30960366|gb|AAP38916.1| UL40 [Human herpesvirus 1] gi|30960369|gb|AAP38918.1| UL40 [Human herpesvirus 1] gi|30960372|gb|AAP38920.1| UL40 [Human herpesvirus 1] gi|30960375|gb|AAP38922.1| UL40 [Human herpesvirus 1] gi|30960378|gb|AAP38924.1| UL40 [Human herpesvirus 1] gi|30960381|gb|AAP38926.1| UL40 [Human herpesvirus 1] gi|30960384|gb|AAP38928.1| UL40 [Human herpesvirus 1] gi|30960387|gb|AAP38930.1| UL40 [Human herpesvirus 1] gi|30960390|gb|AAP38932.1| UL40 [Human herpesvirus 1] gi|30960393|gb|AAP38934.1| UL40 [Human herpesvirus 1] gi|30960396|gb|AAP38936.1| UL40 [Human herpesvirus 1] gi|30960399|gb|AAP38938.1| UL40 [Human herpesvirus 1] gi|30960402|gb|AAP38940.1| UL40 [Human herpesvirus 1] gi|30960405|gb|AAP38942.1| UL40 [Human herpesvirus 1] gi|30960408|gb|AAP38944.1| UL40 [Human herpesvirus 1] gi|30960411|gb|AAP38946.1| UL40 [Human herpesvirus 1] gi|30960414|gb|AAP38948.1| UL40 [Human herpesvirus 1] gi|30960417|gb|AAP38950.1| UL40 [Human herpesvirus 1] gi|30960432|gb|AAP38960.1| UL40 [Human herpesvirus 1] gi|30960435|gb|AAP38962.1| UL40 [Human herpesvirus 1] gi|30960438|gb|AAP38964.1| UL40 [Human herpesvirus 1] gi|30960441|gb|AAP38966.1| UL40 [Human herpesvirus 1] gi|30960444|gb|AAP38968.1| UL40 [Human herpesvirus 1] gi|30960447|gb|AAP38970.1| UL40 [Human herpesvirus 1] gi|30960450|gb|AAP38972.1| UL40 [Human herpesvirus 1] gi|30960453|gb|AAP38974.1| UL40 [Human herpesvirus 1] gi|30960456|gb|AAP38976.1| UL40 [Human herpesvirus 1] gi|30960459|gb|AAP38978.1| UL40 [Human herpesvirus 1] gi|30960462|gb|AAP38980.1| UL40 [Human herpesvirus 1] gi|30960471|gb|AAP38986.1| UL40 [Human herpesvirus 1] gi|30960474|gb|AAP38988.1| UL40 [Human herpesvirus 1] gi|30960477|gb|AAP38990.1| UL40 [Human herpesvirus 1] gi|30960480|gb|AAP38992.1| UL40 [Human herpesvirus 1] gi|30960483|gb|AAP38994.1| UL40 [Human herpesvirus 1] gi|30960486|gb|AAP38996.1| UL40 [Human herpesvirus 1] gi|30960489|gb|AAP38998.1| UL40 [Human herpesvirus 1] gi|30960495|gb|AAP39002.1| UL40 [Human herpesvirus 1] gi|30960498|gb|AAP39004.1| UL40 [Human herpesvirus 1] gi|30960501|gb|AAP39006.1| UL40 [Human herpesvirus 1] gi|30960504|gb|AAP39008.1| UL40 [Human herpesvirus 1] gi|30960507|gb|AAP39010.1| UL40 [Human herpesvirus 1] gi|30960510|gb|AAP39012.1| UL40 [Human herpesvirus 1] gi|30960513|gb|AAP39014.1| UL40 [Human herpesvirus 1] gi|30960516|gb|AAP39016.1| UL40 [Human herpesvirus 1] gi|30960519|gb|AAP39018.1| UL40 [Human herpesvirus 1] gi|30960522|gb|AAP39020.1| UL40 [Human herpesvirus 1] gi|30960528|gb|AAP39024.1| UL40 [Human herpesvirus 1] gi|30960531|gb|AAP39026.1| UL40 [Human herpesvirus 1] gi|30960534|gb|AAP39028.1| UL40 [Human herpesvirus 1] gi|30960537|gb|AAP39030.1| UL40 [Human herpesvirus 1] gi|30960540|gb|AAP39032.1| UL40 [Human herpesvirus 1] gi|30960543|gb|AAP39034.1| UL40 [Human herpesvirus 1] gi|30960546|gb|AAP39036.1| UL40 [Human herpesvirus 1] gi|30960549|gb|AAP39038.1| UL40 [Human herpesvirus 1] gi|30960552|gb|AAP39040.1| UL40 [Human herpesvirus 1] gi|30960555|gb|AAP39042.1| UL40 [Human herpesvirus 1] gi|30960558|gb|AAP39044.1| UL40 [Human herpesvirus 1] gi|30960561|gb|AAP39046.1| UL40 [Human herpesvirus 1] gi|30960564|gb|AAP39048.1| UL40 [Human herpesvirus 1] gi|30960567|gb|AAP39050.1| UL40 [Human herpesvirus 1] gi|30960570|gb|AAP39052.1| UL40 [Human herpesvirus 1] gi|30960573|gb|AAP39054.1| UL40 [Human herpesvirus 1] gi|30960576|gb|AAP39056.1| UL40 [Human herpesvirus 1] gi|30960579|gb|AAP39058.1| UL40 [Human herpesvirus 1] gi|30960582|gb|AAP39060.1| UL40 [Human herpesvirus 1] gi|30960585|gb|AAP39062.1| UL40 [Human herpesvirus 1] gi|30960588|gb|AAP39064.1| UL40 [Human herpesvirus 1] gi|30960591|gb|AAP39066.1| UL40 [Human herpesvirus 1] gi|30960594|gb|AAP39068.1| UL40 [Human herpesvirus 1] gi|30960597|gb|AAP39070.1| UL40 [Human herpesvirus 1] gi|30960600|gb|AAP39072.1| UL40 [Human herpesvirus 1] gi|30960603|gb|AAP39074.1| UL40 [Human herpesvirus 1] gi|30960606|gb|AAP39076.1| UL40 [Human herpesvirus 1] gi|30960609|gb|AAP39078.1| UL40 [Human herpesvirus 1] gi|30960612|gb|AAP39080.1| UL40 [Human herpesvirus 1] gi|30960615|gb|AAP39082.1| UL40 [Human herpesvirus 1] gi|30960618|gb|AAP39084.1| UL40 [Human herpesvirus 1] gi|30960621|gb|AAP39086.1| UL40 [Human herpesvirus 1] gi|30960624|gb|AAP39088.1| UL40 [Human herpesvirus 1] gi|30960627|gb|AAP39090.1| UL40 [Human herpesvirus 1] gi|30960630|gb|AAP39092.1| UL40 [Human herpesvirus 1] gi|30960633|gb|AAP39094.1| UL40 [Human herpesvirus 1] gi|30960636|gb|AAP39096.1| UL40 [Human herpesvirus 1] gi|30960639|gb|AAP39098.1| UL40 [Human herpesvirus 1] gi|30960642|gb|AAP39100.1| UL40 [Human herpesvirus 1] gi|30960645|gb|AAP39102.1| UL40 [Human herpesvirus 1] gi|30960648|gb|AAP39104.1| UL40 [Human herpesvirus 1] gi|30960651|gb|AAP39106.1| UL40 [Human herpesvirus 1] gi|30960657|gb|AAP39110.1| UL40 [Human herpesvirus 1] gi|30960660|gb|AAP39112.1| UL40 [Human herpesvirus 1] gi|30960663|gb|AAP39114.1| UL40 [Human herpesvirus 1] gi|30960666|gb|AAP39116.1| UL40 [Human herpesvirus 1] gi|30960669|gb|AAP39118.1| UL40 [Human herpesvirus 1] gi|30960672|gb|AAP39120.1| UL40 [Human herpesvirus 1] gi|30960675|gb|AAP39122.1| UL40 [Human herpesvirus 1] gi|30960678|gb|AAP39124.1| UL40 [Human herpesvirus 1] gi|30960681|gb|AAP39126.1| UL40 [Human herpesvirus 1] gi|30960684|gb|AAP39128.1| UL40 [Human herpesvirus 1] gi|30960687|gb|AAP39130.1| UL40 [Human herpesvirus 1] gi|30960690|gb|AAP39132.1| UL40 [Human herpesvirus 1] gi|30960693|gb|AAP39134.1| UL40 [Human herpesvirus 1] gi|30960696|gb|AAP39136.1| UL40 [Human herpesvirus 1] gi|30960699|gb|AAP39138.1| UL40 [Human herpesvirus 1] gi|30960702|gb|AAP39140.1| UL40 [Human herpesvirus 1] gi|30960711|gb|AAP39146.1| UL40 [Human herpesvirus 1] gi|30960714|gb|AAP39148.1| UL40 [Human herpesvirus 1] gi|30960717|gb|AAP39150.1| UL40 [Human herpesvirus 1] gi|30960720|gb|AAP39152.1| UL40 [Human herpesvirus 1] gi|30960723|gb|AAP39154.1| UL40 [Human herpesvirus 1] gi|30960726|gb|AAP39156.1| UL40 [Human herpesvirus 1] gi|30960732|gb|AAP39160.1| UL40 [Human herpesvirus 1] gi|30960735|gb|AAP39162.1| UL40 [Human herpesvirus 1] gi|30960738|gb|AAP39164.1| UL40 [Human herpesvirus 1] gi|30960741|gb|AAP39166.1| UL40 [Human herpesvirus 1] gi|30960744|gb|AAP39168.1| UL40 [Human herpesvirus 1] gi|30960747|gb|AAP39170.1| UL40 [Human herpesvirus 1] gi|30960750|gb|AAP39172.1| UL40 [Human herpesvirus 1] gi|30960756|gb|AAP39176.1| UL40 [Human herpesvirus 1] gi|30960759|gb|AAP39178.1| UL40 [Human herpesvirus 1] gi|30960762|gb|AAP39180.1| UL40 [Human herpesvirus 1] gi|30960765|gb|AAP39182.1| UL40 [Human herpesvirus 1] gi|30960768|gb|AAP39184.1| UL40 [Human herpesvirus 1] gi|30960771|gb|AAP39186.1| UL40 [Human herpesvirus 1] gi|30960774|gb|AAP39188.1| UL40 [Human herpesvirus 1] gi|30960780|gb|AAP39192.1| UL40 [Human herpesvirus 1] gi|30960783|gb|AAP39194.1| UL40 [Human herpesvirus 1] gi|30960786|gb|AAP39196.1| UL40 [Human herpesvirus 1] gi|30960789|gb|AAP39198.1| UL40 [Human herpesvirus 1] gi|30960792|gb|AAP39200.1| UL40 [Human herpesvirus 1] gi|30960795|gb|AAP39202.1| UL40 [Human herpesvirus 1] gi|30960798|gb|AAP39204.1| UL40 [Human herpesvirus 1] gi|30960801|gb|AAP39206.1| UL40 [Human herpesvirus 1] gi|30960804|gb|AAP39208.1| UL40 [Human herpesvirus 1] gi|30960807|gb|AAP39210.1| UL40 [Human herpesvirus 1] gi|30960810|gb|AAP39212.1| UL40 [Human herpesvirus 1] gi|30960816|gb|AAP39216.1| UL40 [Human herpesvirus 1] gi|30960822|gb|AAP39220.1| UL40 [Human herpesvirus 1] gi|30960825|gb|AAP39222.1| UL40 [Human herpesvirus 1] gi|30960828|gb|AAP39224.1| UL40 [Human herpesvirus 1] gi|30960834|gb|AAP39228.1| UL40 [Human herpesvirus 1] gi|30960840|gb|AAP39232.1| UL40 [Human herpesvirus 1] gi|30960843|gb|AAP39234.1| UL40 [Human herpesvirus 1] gi|30960846|gb|AAP39236.1| UL40 [Human herpesvirus 1] gi|30960849|gb|AAP39238.1| UL40 [Human herpesvirus 1] gi|30960852|gb|AAP39240.1| UL40 [Human herpesvirus 1] gi|30960855|gb|AAP39242.1| UL40 [Human herpesvirus 1] gi|30960858|gb|AAP39244.1| UL40 [Human herpesvirus 1] Length = 307 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 23 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W + Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K + + +A +EI + P L Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240 Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299 >gi|320194816|gb|EFW69445.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli WV_060327] Length = 319 Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust. Identities = 54/270 (20%), Positives = 103/270 (38%), Gaps = 31/270 (11%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ +L Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIGAPSLLP---DAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--ITSVFLESFLFYSGFWLQMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT---LLEIAYAHETMPKGFVG 286 DE++H + I Q +E + Q+ R L LLE+ Y +E + Sbjct: 191 DEAVH-GYYIGYKYQKNLE-------KISQEQREELKSFAFDLLLEL-YDNELQYTDELY 241 Query: 287 LNAPSCEQYMQFI---ANRRCHQIGLEPLF 313 P + F+ AN+ +G EPLF Sbjct: 242 AETPWSDDVKAFLCYNANKALMNLGYEPLF 271 >gi|91212037|ref|YP_542023.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UTI89] gi|117624912|ref|YP_853853.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli APEC O1] gi|218559668|ref|YP_002392581.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli S88] gi|237706702|ref|ZP_04537183.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 3_2_53FAA] gi|91073611|gb|ABE08492.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli UTI89] gi|115514036|gb|ABJ02111.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli APEC O1] gi|218366437|emb|CAR04189.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli S88] gi|226899742|gb|EEH86001.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 3_2_53FAA] gi|294492274|gb|ADE91030.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli IHE3034] gi|315284934|gb|EFU44379.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 110-3] gi|323951102|gb|EGB46978.1| ribonucleotide reductase [Escherichia coli H252] gi|323957111|gb|EGB52836.1| ribonucleotide reductase [Escherichia coli H263] Length = 319 Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust. Identities = 51/267 (19%), Positives = 104/267 (38%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFASRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDV---INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 DE++H + I NQ KI +E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNQEKISQAQ--REELKSFAFDLLLELYDNELQYTDELYAETPW- 246 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 + + ++ + AN+ +G EPLF Sbjct: 247 --SDDVKAFLCYNANKALMNLGYEPLF 271 >gi|222478371|gb|ACM62263.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1] Length = 340 Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust. Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 56 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 111 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W + Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 171 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 172 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K + + +A +EI + P L Sbjct: 218 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273 Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 332 >gi|9629421|ref|NP_044642.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1] gi|132622|sp|P10224|RIR2_HHV11 RecName: Full=Ribonucleoside-diphosphate reductase small chain; Short=R2; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit; Flags: Precursor gi|59540|emb|CAA32303.1| ribonucleotide reductase small subunit [Human herpesvirus 1] Length = 340 Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust. Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 56 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 111 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W + Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 171 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 172 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K + + +A +EI + P L Sbjct: 218 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273 Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 332 >gi|114318828|gb|ABI63502.1| UL40 [Human herpesvirus 1] gi|290766139|gb|ADD60116.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1] Length = 340 Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust. Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 56 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 111 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W + Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 171 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 172 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K + + +A +EI + P L Sbjct: 218 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273 Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 332 >gi|30960708|gb|AAP39144.1| UL40 [Human herpesvirus 1] Length = 307 Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust. Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 23 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W + Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K + + +A +EI + P L Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240 Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299 >gi|311741200|ref|ZP_07715024.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium pseudogenitalium ATCC 33035] gi|311303370|gb|EFQ79449.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium pseudogenitalium ATCC 33035] Length = 329 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 50/268 (18%), Positives = 100/268 (37%), Gaps = 19/268 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +DL WK+ LT+ E+ R +++ +++ Sbjct: 37 TGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGLTLLDTIQGTVGAISLLPDSQ 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 AF E+VH+ ++ I +L P I W+ + Sbjct: 94 TLHEEAVYTNIAFMESVHAKSYSNIFMTLA-----------STPMINDAFRWSEENENLQ 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + V + E FY+GF + K+ A+ + I+R Sbjct: 143 KKAKIILSYYKGDDPLKKK--VASTLLESFLFYSGFYLPMYFSSRAKLTNTADIIRLIIR 200 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE++H + Q + E ++ + ++++ EI Y + +G Sbjct: 201 DEAVHGYYIGYKFQQAYKQLDEEHQAELKEYTFDLVYDLYDNEIDYTEDLYDD--LGW-T 257 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++++++ AN+ + +G E LF E Sbjct: 258 EDVKRFLRYNANKALNNLGFEGLFPADE 285 >gi|221783|dbj|BAA00748.1| UL40 [Human herpesvirus 2] Length = 262 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 59/267 (22%), Positives = 103/267 (38%), Gaps = 30/267 (11%) Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEG 143 F ++++ LV N+ + + Y + Q E VHS + I L D+ Sbjct: 9 FAFLSAADDLVTENLG-GLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQA 67 Query: 144 ELFNMYREV--PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + R + P+I K +W ++ D + + F+ ++ EG++F Sbjct: 68 RRAYVARTINHPAIRVKVDW------------LEARVRECDS--IPEKFILMILIEGVFF 113 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 FA I L N + + I RDE++H I N +L + + Sbjct: 114 AASFAAIAYLRTNNLLRVTCQSNDLISRDEAVH------TTASCYIYNNYLGGHAKPEAA 167 Query: 262 RT--MLHEATLLEIAYAHETMPKGFVGLNA---PSCEQYMQFIANRRCHQIGLEPLFKYT 316 R + EA +EI + P L+ + E Y++F A+R I ++PL+ Sbjct: 168 RVYRLFREAVDIEIGFIRSQAPTDSSILSPGALAAIENYVRFSADRLLGLIHMQPLYSAP 227 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEY 343 + ++ K NFFE R T Y Sbjct: 228 APDASFPLSLMSTDKHTNFFECRSTSY 254 >gi|110642801|ref|YP_670531.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 536] gi|191171432|ref|ZP_03032981.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli F11] gi|300990601|ref|ZP_07179251.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 200-1] gi|110344393|gb|ABG70630.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli 536] gi|190908366|gb|EDV67956.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli F11] gi|300305718|gb|EFJ60238.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 200-1] gi|324014406|gb|EGB83625.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 60-1] Length = 319 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 53/270 (19%), Positives = 103/270 (38%), Gaps = 31/270 (11%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--ITSVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT---LLEIAYAHETMPKGFVG 286 DE++H + I Q +E + Q+ R L LLE+ Y +E + Sbjct: 191 DEAVH-GYYIGYKYQKNLE-------KISQEQREELKSFAFDLLLEL-YDNELQYTDELY 241 Query: 287 LNAPSCEQYMQFI---ANRRCHQIGLEPLF 313 P + F+ AN+ +G EPLF Sbjct: 242 AETPWSDDVKAFLCYNANKALMNLGYEPLF 271 >gi|291284009|ref|YP_003500827.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli O55:H7 str. CB9615] gi|290763882|gb|ADD57843.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli O55:H7 str. CB9615] Length = 319 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISPGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|39938541|ref|NP_950307.1| ribonucleotide-diphosphate reductase subunit beta [Onion yellows phytoplasma OY-M] gi|39721650|dbj|BAD04140.1| ribonucleotide reductase beta subunit [Onion yellows phytoplasma OY-M] Length = 350 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 70/286 (24%), Positives = 120/286 (41%), Gaps = 32/286 (11%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P ++ +Q DLA W LT +E+ RNL ++ + + I R L E Sbjct: 41 WRPEDISLQGDLAAWSE---LTLEEKTAYSRNLLVLTFLDTYQGDLGMPVIARSLEEHEH 97 Query: 114 RQYL---LRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---------REVPSITAKANW 161 ++ A E AVH+ ++ I S L E+ ++ + + + K Sbjct: 98 QKKATLNFMGAMENAVHAKSYSNIFMSY-LTNKEINQLFLWGNQQTSLQTMMQVIVKVYE 156 Query: 162 ALQ---YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 AL+ Y + SS F+ Q + VF E FY+GF L K++ Sbjct: 157 ALEDQIYLKKQSSLQFSELEFKKTQWQAMAVSVF---LETWLFYSGFYYSLYFYGQGKLM 213 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 E I+RDES+H G+ + ++ E L+ K QQ +T L + L++ Y + Sbjct: 214 QSGEIINLIIRDESIH---GV-YVGRLATEIYQLFDKPTQQTLKTWLDD--LMQQLYQAQ 267 Query: 279 T--MPKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 T + + LN +++++ AN+ +G + F +EN P Sbjct: 268 TSLVHAIYHKLNLEDDVNKFVRYNANKALMNLGFDAFFP-SENVNP 312 >gi|306812443|ref|ZP_07446641.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli NC101] gi|222034376|emb|CAP77117.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli LF82] gi|305854481|gb|EFM54919.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli NC101] gi|312947211|gb|ADR28038.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O83:H1 str. NRG 857C] Length = 319 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 49/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E +E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISQARREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 + + ++ + AN+ +G EPLF Sbjct: 247 SDDVKAFLCYNANKALMNLGYEPLF 271 >gi|25028975|ref|NP_739029.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium efficiens YS-314] gi|259508040|ref|ZP_05750940.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium efficiens YS-314] gi|23494262|dbj|BAC19229.1| ribonucleotide reductase beta chain [Corynebacterium efficiens YS-314] gi|259164381|gb|EEW48935.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium efficiens YS-314] Length = 334 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 49/270 (18%), Positives = 106/270 (39%), Gaps = 23/270 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W + LTD E+ R +++ +++ Sbjct: 42 TGNFWLPEKIPVSNDIKSWGT---LTDKEKQATMRVFTGLTLLDTIQGTVGAVSLLPDAE 98 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + L AF E+VH+ ++ I +L P I W+ + Sbjct: 99 SLHEEAVLTNIAFMESVHAKSYSNIFMTLA-----------STPQINDAFRWSEENEALQ 147 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + + + + V+ E FY+GF + K+ A+ + I+R Sbjct: 148 RKAKIILAYYEGEDPLKRK--IASVILESFLFYSGFYLPMYWSSHAKLTNTADVIRLIIR 205 Query: 230 DESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGL 287 DE++H + G + E+ +E ++ + +L++ E Y + + G+ Sbjct: 206 DEAVHGYYVGYKYQKALARESAQR-QEELKEYAFDLLYDLYENETQYTEDLYDELGWT-- 262 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++++++ AN+ + +G E LF E Sbjct: 263 --EDVKRFLRYNANKAMNNLGYEGLFPADE 290 >gi|30960705|gb|AAP39142.1| UL40 [Human herpesvirus 1] gi|30960777|gb|AAP39190.1| UL40 [Human herpesvirus 1] Length = 307 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 23 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W + Sbjct: 79 DIIHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K + + +A +EI + P L Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240 Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299 >gi|30960654|gb|AAP39108.1| UL40 [Human herpesvirus 1] Length = 307 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 23 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENMG-GLSGLFEQK 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W + Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K + + +A +EI + P L Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240 Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299 >gi|218690804|ref|YP_002399016.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli ED1a] gi|218428368|emb|CAR09297.2| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli ED1a] Length = 319 Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust. Identities = 49/265 (18%), Positives = 103/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E +E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNLEKISQARREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 + + ++ + AN+ +G EPLF Sbjct: 247 SDDVKAFLCYNANKALMNLGYEPLF 271 >gi|30960729|gb|AAP39158.1| UL40 [Human herpesvirus 1] Length = 307 Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust. Identities = 63/299 (21%), Positives = 114/299 (38%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 23 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 + + ++ + F+ ++ EG++F FA I L N + + I Sbjct: 133 --------LEARVRECAYVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K + + +A +EI + P L Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240 Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299 >gi|307625752|gb|ADN70056.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UM146] Length = 319 Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust. Identities = 51/267 (19%), Positives = 104/267 (38%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFASRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDV---INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 DE++H + I NQ KI +E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNQEKISQAQ--REELKSFAFDLLLELYDNELQYTDELYAETPW- 246 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 + + ++ + AN+ +G EPLF Sbjct: 247 --SDDVKAFLCYNANKVLMNLGYEPLF 271 >gi|256389757|ref|YP_003111321.1| hypothetical protein Caci_0537 [Catenulispora acidiphila DSM 44928] gi|256355983|gb|ACU69480.1| hypothetical protein Caci_0537 [Catenulispora acidiphila DSM 44928] Length = 353 Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust. Identities = 31/149 (20%), Positives = 67/149 (44%), Gaps = 5/149 (3%) Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 ES V + A+ H + R YL Q +EA H FQ ++ + E + Sbjct: 95 GESCVTRTLS-ALADHAPDEADRLYLCTQMADEARHVRFFQSYLSDVAGIAAEQLEPH-- 151 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV-FYVVFEGMWFYTGFAQILS 210 ++ ++ + + Y L+ + T+ D+ V ++++ EG+ G + + Sbjct: 152 -GAMGGESGFGVVYDPLLTRHTAAVRTRPDDRRVWHVAVVSYHLLAEGLLAVAGLRALRA 210 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGI 239 L ++ ++ ++E ++RDE+ H+ FG+ Sbjct: 211 LAKSCELTALSEGLANVVRDEARHVTFGL 239 >gi|203288309|ref|YP_002223359.1| ribonucleoside-diphosphate reductase, beta subunit [Borrelia recurrentis A1] gi|203288575|ref|YP_002223482.1| ribonucleoside-diphosphate reductase beta subunit [Borrelia duttonii Ly] gi|201084282|gb|ACH93870.1| ribonucleoside-diphosphate reductase beta subunit [Borrelia duttonii Ly] gi|201085529|gb|ACH95102.1| ribonucleoside-diphosphate reductase, beta subunit [Borrelia recurrentis A1] Length = 321 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 68/296 (22%), Positives = 118/296 (39%), Gaps = 25/296 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ E+P+ DD +W N L+ DER + ++ LG ++ + + I + N + Sbjct: 30 WVDEEIPISDDKLVW---NTLSVDERDVYEKVLGGLTLLDTEQGSVGMPRIALAIDNLDY 86 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + L E +H+ ++ I +SL + I +W Y Sbjct: 87 KPILGFMGAMEHMHAKSYSSIFSSL-----------SNIDRIDYIFDWVKTYRNYQEKLE 135 Query: 174 FTTGTKDA--DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 G + D+ L V E FY+GF L L KMV E I+RDE Sbjct: 136 LILGKYNNIHDRMSLYQALCTSVFLETFLFYSGFFYPLYLAGQGKMVNSGEIINLILRDE 195 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL-LEIAYAHETMPKGFVGLNAP 290 S+H F + ++ Q + + + +E K ++ E LE Y E VGL + Sbjct: 196 SVHGVF-VGLLAQEEFDKMTMKEQELAYKEMLLILEKLYSLEREYTKELYS--CVGLES- 251 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343 + + ++++ A++ +G + F + NP D K +FF T+ Y Sbjct: 252 AVDVFVRYNADKALMNLGFDTKFNIKDTDVNPLVLNGLRTDTKTH-DFFSTKGNGY 306 >gi|157159438|ref|YP_001463986.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli E24377A] gi|218555224|ref|YP_002388137.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli IAI1] gi|300815921|ref|ZP_07096145.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 107-1] gi|157081468|gb|ABV21176.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E24377A] gi|218361992|emb|CAQ99598.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli IAI1] gi|300531850|gb|EFK52912.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 107-1] Length = 319 Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust. Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q +E L + E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ + EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLDYEPLF 271 >gi|172039808|ref|YP_001799522.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium urealyticum DSM 7109] gi|171851112|emb|CAQ04088.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium urealyticum DSM 7109] Length = 334 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 28/197 (14%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNI 100 E +L N W+P +VP+ +DL W N L+D ER + R L + ++ V Sbjct: 37 EVWLRLTANFWLPEKVPLSNDLPDW---NRLSDLERTLTMRVFTGLTLLDTMQATVGE-- 91 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + I L+ E Y AF +AVH+ ++ + ++L P+I + Sbjct: 92 ISQIQDALTEHEEAVY-TNIAFMQAVHARSYSSVFSTLS-----------STPAINDAYD 139 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKM 217 WA++ + L T K F +D V + + Y GF L + Sbjct: 140 WAVK-NEVLQ----TRCRKVLVHYFGEDPLKRKVSATLLSSVLLYAGFYLPLHFSTRGVL 194 Query: 218 VGIAEQYQYIMRDESLH 234 A+ + I+RD+++H Sbjct: 195 SNTADMIRLILRDKAVH 211 >gi|311278369|ref|YP_003940600.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1] gi|308747564|gb|ADO47316.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1] Length = 320 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 16/184 (8%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 +N W+P ++P+ +D+ W+S + + + L + ++ V ++ Sbjct: 29 SNFWLPEKIPLSNDIPAWQSLSHAEQQLTIRVFTGLTLLDTVQNTVG---APSLMPDALT 85 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 P L F EAVH+ ++ I ++L + + A W+ + Sbjct: 86 PHEEAVLSNIGFMEAVHARSYSSIFSTLC-----------QSKDVDAAYAWSEENAPLQQ 134 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 G AD + + V E FY+GF + K+ A+ + I+RD Sbjct: 135 KARTVLGHYAADCPLKRK--IASVFLESFLFYSGFWLPMYWSSRGKLTNTADLIRLIIRD 192 Query: 231 ESLH 234 E++H Sbjct: 193 EAVH 196 >gi|269941513|emb|CBI49911.1| ribonucleoside-diphosphate reductase subunit [Staphylococcus aureus subsp. aureus TW20] Length = 340 Score = 42.4 bits (98), Expect = 0.097, Method: Compositional matrix adjust. Identities = 66/275 (24%), Positives = 109/275 (39%), Gaps = 26/275 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E DL++WK+ L+ DE+ + L ++ + + H Sbjct: 31 WTEEEFKPSKDLSVWKT---LSADEQETYVKALSGLTGLDTTQGTEGMPLLAFHYPEEIW 87 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 R + E +H ++ +I TSL + + + VP AN L L + + Sbjct: 88 RGVFAFMSMMENIHHKSYSHIFTSLLERKDTHYYLKEWVP-----ANKYLNKKTKLITTN 142 Query: 174 FTTGTKD--ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + K D+E + + E F++GF L L KMV E + I+ DE Sbjct: 143 YYKLLKPNPTDREIYVAM-ASSIFLESFLFFSGFYYPLYLAGQGKMVHSGEIIRKIILDE 201 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKGFVGL 287 ++H + G Q+ E ++KE Q+ R L E E+ YA K +GL Sbjct: 202 TIHGS-GTGYAAQVIFEK---FSKEEQEDIRKELMELFDQLYFNEVEYAASLYDK--LGL 255 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +Y+Q+ NR +G E +F NP P+ Sbjct: 256 TEDVI-RYIQYNGNRALMNLGWETVF----NPEPF 285 >gi|307132178|ref|YP_003884194.1| ribonucleoside-diphosphate reductase 2, subunit beta, ferritin-like protein [Dickeya dadantii 3937] gi|306529707|gb|ADM99637.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Dickeya dadantii 3937] Length = 330 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 29/269 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++ + +D+ W L+D ER + R ++L A+ Sbjct: 38 TTNFWLPEKIALSNDMPSWAQ---LSDIERQLTLRVFTGLTLLDTLQNTQGAPALMADAL 94 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY----REVPSITAKANWALQY 165 P L F EAVH+ ++ I ++L L E+ + Y R P + KA L + Sbjct: 95 TPHEEAVLSNIGFMEAVHARSYSAIFSTLCL-TSEVDDAYSWSERNQP-LQNKAALILSH 152 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 Q D ++ + +F+ E FY+GF + ++ A+ + Sbjct: 153 YQH----------DDPLKKKIASVFL-----ESFLFYSGFYLPMYWASRGQLTNTADLIR 197 Query: 226 YIMRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 I+RDE++H + G +K ++ Q + +L E+ Y HE Sbjct: 198 LIIRDEAVHGYYIGYKYQQGLKRVGTQQ-QRDLQAFAYDLLQTLYDNEVDYTHELYDD-- 254 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 VG + +++ + AN+ +G E LF Sbjct: 255 VGW-SDDVVKFLHYNANKALMNLGYEALF 282 >gi|218706176|ref|YP_002413695.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UMN026] gi|293406173|ref|ZP_06650099.1| ribonucleotide reductase beta subunit [Escherichia coli FVEC1412] gi|298381910|ref|ZP_06991507.1| ribonucleoside-diphosphate reductase subunit beta [Escherichia coli FVEC1302] gi|300898656|ref|ZP_07116977.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 198-1] gi|301019059|ref|ZP_07183270.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 69-1] gi|331674197|ref|ZP_08374957.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA280] gi|218433273|emb|CAR14173.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli UMN026] gi|291426179|gb|EFE99211.1| ribonucleotide reductase beta subunit [Escherichia coli FVEC1412] gi|298277050|gb|EFI18566.1| ribonucleoside-diphosphate reductase subunit beta [Escherichia coli FVEC1302] gi|300357684|gb|EFJ73554.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 198-1] gi|300399412|gb|EFJ82950.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 69-1] gi|331068291|gb|EGI39686.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA280] Length = 319 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 50/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLSVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAPLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDNPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 DE++H + I Q E +E + + +L E E+ Y E + Sbjct: 191 DEAVH-GYYIGYKYQKSQEKISQAQREELKSFAFDLLLELYDNELQYTDELYAETPW--- 246 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|308183791|ref|YP_003927923.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047717|gb|ADO00260.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 242 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/201 (22%), Positives = 87/201 (43%), Gaps = 30/201 (14%) Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 E++H+ ++ I+TSL D+ + +++ + + N +QY + + TG + Sbjct: 21 ESIHAKSYGTILTSLN-DQATVDEVFKWMNN-----NPRMQYKAKRINDIYQTGNNLEKK 74 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH-------LN 236 V V EG+ +YT F L NK+ ++E + ++RDES+H Sbjct: 75 -------VASVFLEGILYYTNFFTPLWYRGNNKLANLSEVIKLVIRDESVHGTYLGYKFQ 127 Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296 G + ++ + + W E +L + E A+ E +GL A +Q++ Sbjct: 128 LGYNELSATEQKTFKKWMDE-------LLDDLLENEFAFTEEVYAP--IGL-AEDVKQFV 177 Query: 297 QFIANRRCHQIGLEPLFKYTE 317 + AN+ +GLE F E Sbjct: 178 HYNANKALQNMGLESRFPNAE 198 >gi|254823272|ref|ZP_05228273.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium intracellulare ATCC 13950] Length = 313 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 63/278 (22%), Positives = 112/278 (40%), Gaps = 26/278 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D W+ LT+DER R F + E Sbjct: 19 LPLKL------FAGGNAKFWNPADIDFSRDREDWER---LTEDERSYATRLCAEFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I +A R YL + AFEEA H F+ + ++G+ E +L +V Sbjct: 70 SVTQDIQPFMAAMRAEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGITE-DLHYFLDDV 128 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 P T + + + L+ + T A Q ++ + + EGM TG+ + Sbjct: 129 P--TYRTIFYEELPACLN--ALTLDPSPAAQ--VRASVTYNHMVEGMLALTGYFGWHKIC 182 Query: 213 RANKMV-GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 ++ G+ E + I DE H+ +G + + W + + M L+ Sbjct: 183 VERGILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLI 242 Query: 272 EIAYA-HETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 E +A ++ MP G S +++MQ+ +++ + G Sbjct: 243 EEGFALYDPMPFGL------SVDEFMQYASDKGMRRFG 274 >gi|319441868|ref|ZP_07991024.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium variabile DSM 44702] Length = 332 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 20/187 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P +VP+ +D+ W + L++ E+ R +++ ++ Sbjct: 40 TGNFWLPEKVPLSNDIKSWGT---LSEAEQTATMRVFTGLTMLDTIQGTVGATSLIDDAV 96 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQ 167 P AF E+VH+ ++ I +L + F E ++ KA+ L + Q Sbjct: 97 TPHEEAVFTNIAFMESVHAKSYSSIFMTLASTPQINDAFRWSEENENLQTKADIVLNFYQ 156 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V + E FY+GF + K+ A+ + I Sbjct: 157 -------------GDDPLKKK--VASTLLESFLFYSGFYLPMYWSSHAKLTNTADVIRLI 201 Query: 228 MRDESLH 234 +RDE++H Sbjct: 202 IRDEAVH 208 >gi|330971158|gb|EGH71224.1| hypothetical protein PSYAR_11719 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 25 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 17/20 (85%), Positives = 19/20 (95%) Query: 318 NPFPWMSEVIDLKKEKNFFE 337 NPFPWMSE+I LKKE+NFFE Sbjct: 2 NPFPWMSEIIALKKERNFFE 21 >gi|260583950|ref|ZP_05851698.1| ribonucleoside-diphosphate reductase, beta subunit [Granulicatella elegans ATCC 700633] gi|260158576|gb|EEW93644.1| ribonucleoside-diphosphate reductase, beta subunit [Granulicatella elegans ATCC 700633] Length = 336 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 60/284 (21%), Positives = 117/284 (41%), Gaps = 22/284 (7%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D NQ+ + WEK W+ T +P+ +DL W++ L+ E+ ++ + G Sbjct: 26 DWNQVEDMIDKMTWEK---LTEQFWLDTRIPVSNDLDDWRT---LSPAEKDVVGKVFGGL 79 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++L + + ++ F E+VH+ ++ I ++L + E+ ++ Sbjct: 80 TLLDTLQSEEGASLMKDYVRTQHEEAVWNNIQFMESVHAKSYSTIFSTLHT-KAEIEEIF 138 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 + N LQY + + + +DA + + V + E FY+GF L Sbjct: 139 EWTNN-----NEFLQYKAQKINEIYQS--RDALK-----MKVASTMLETFLFYSGFFTPL 186 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NK+ +AE + I+RDES+H + Q E P + + + E Sbjct: 187 YYLGNNKLANVAEIIKLIIRDESVHGTYTGYKFQQGYNELPLEEQETLKMWVYQLCLELY 246 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E+ Y + VG + ++++ AN+ +G +PLF Sbjct: 247 QNEVKYTQSIYDQ--VGW-TEKVKVFIRYNANKALQNLGFDPLF 287 >gi|290992332|ref|XP_002678788.1| predicted protein [Naegleria gruberi] gi|284092402|gb|EFC46044.1| predicted protein [Naegleria gruberi] Length = 330 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 9/160 (5%) Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 T+ +T ++D F + L + V E ++ F I L + M + I Sbjct: 146 TMKKSQYTKKWLNSDNLFSERL-IGLVCIEQIFLSASFFSIFWLKKRGLMSALTISNDLI 204 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE H NF + + +K +K Q +++ EA +E + ++P + L Sbjct: 205 FRDEEFHSNFLYSLYSNLK------HSKLPQTLVHSLVKEAVDIEKEFI-TSLPTELIEL 257 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 + S QY++ +++ G E LF +TEN W+ +++ Sbjct: 258 DRNSMYQYVEVVSDNILISFGYEKLF-HTENQCSWIQDML 296 >gi|156086328|ref|XP_001610573.1| ribonucleoside-diphosphate reductase beta subunit [Babesia bovis T2Bo] gi|154797826|gb|EDO07005.1| ribonucleoside-diphosphate reductase beta subunit, putative [Babesia bovis] Length = 329 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 54/271 (19%), Positives = 104/271 (38%), Gaps = 43/271 (15%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF---FA 90 + P+ Y W Y N+ W + ++ + S L + R ++ + + + Sbjct: 33 MFPIHYDALWAMYKEIENSFWAAEDFRFANERDTYSS---LPTELRQLVVKLISYHNRLD 89 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 SE I L + PE R + Q E +HS F + +++ G + Sbjct: 90 RSEVARPATITLDLLADTQIPEARAFYGFQVSYENIHSELFGIMSSAI---PGTI----- 141 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM---WFYTGFAQ 207 +VP AK W T+ L+S S F V+ + + F + F Sbjct: 142 DVPEADAKIEW---LTRNLTSTS---------------CFYIKVILQCISKAIFRSAFGI 183 Query: 208 ILS-LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 + L + K+ + + +D S+HL F + + +K+ + ++ +L+ Sbjct: 184 LADYLRNSKKLPTLLSALDTVAKDVSIHLKFAMAALEHLKL-------RPTRETVMELLN 236 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 A LE+AY +P +GL+ QY++ Sbjct: 237 SAYDLEMAYCRSVLPMDHMGLSEYHLSQYIK 267 >gi|301750612|gb|ADK88940.1| ribonucleotide reductase subunit 2 [Leporid herpesvirus 4] Length = 316 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 68/303 (22%), Positives = 116/303 (38%), Gaps = 37/303 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ +E+ D + + L+ +E + F ++++ LV + + S Sbjct: 32 NRWLESELVFSGD---ERDVDKLSPEELDFYRFLFTFLSAADDLVTEELG-RLSSLFSQK 87 Query: 112 ECRQYLLRQAFEEAVHSHTFQYI-ITSLGLDEGELFNMYREV---PSITAKANWALQYTQ 167 + Y + Q E VHS + I + DE N +I AK W + Sbjct: 88 DILHYYVEQECIEVVHSRVYSIIQMVLFKSDETARRNYVANTVHNSAIQAKVRWLEARVR 147 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 S + + F+ ++ EG++F FA I L N + + I Sbjct: 148 DCPS--------------VPEKFILMILIEGIFFAASFAAIAFLRTHNILKVTCQSNDLI 193 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP---KGF 284 RDE++H + N + + K ++ + + A +EIA+ P + Sbjct: 194 SRDEAVHTTASCCLYNNYLGQ----YAKPPSERIKQLFSNAVEIEIAFIKAKAPANSRIL 249 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP----FPWMSEVIDLKKEKNFFETRV 340 G + E Y++F A+R IG LF E P FP ++ +K NFFE R Sbjct: 250 DGAAIAAIESYVRFSADRLLKLIGEPALFD--EPPPNDGFPL--RLMSTEKHTNFFECRS 305 Query: 341 TEY 343 T Y Sbjct: 306 TAY 308 >gi|82778048|ref|YP_404397.1| ribonucleotide-diphosphate reductase subunit beta [Shigella dysenteriae Sd197] gi|81242196|gb|ABB62906.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella dysenteriae Sd197] Length = 322 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 51/267 (19%), Positives = 100/267 (37%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 27 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 83 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F E VH+ ++ I ++L + + A W+ + Sbjct: 84 TPHEEAVLSNISFMEVVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENALLQ 132 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + V E FY+GF + K+ A+ + I+R Sbjct: 133 RKAQIIQQHYRGDNPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE++H + I Q +E E Q++ LLE+ Y +E + Sbjct: 191 DEAVH-GYYIGYKYQKSLEK----ISEAQREELKSFAFDLLLEL-YDNELQYTDELYAET 244 Query: 290 PSCEQYMQFI---ANRRCHQIGLEPLF 313 P + F+ AN+ +G EPLF Sbjct: 245 PWADDVKTFLCYNANKALMNLGYEPLF 271 >gi|332087397|gb|EGI92525.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella boydii 5216-82] Length = 319 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 56/267 (20%), Positives = 105/267 (39%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA--IYRH 107 +N W+P +VP+ +D+ ++ LT E+ + R ++L N++ A + Sbjct: 27 TSNFWLPEKVPLSNDIP---ARQTLTVVEQQLTMRVFTGLTLLDTL--QNVIGAPSLMPD 81 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 P L +F EAVH+ ++ I ++L + + A W+ + Sbjct: 82 ALTPHEEAVLSNISFMEAVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENAP 130 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + + V E FY+GF + K+ A+ + I Sbjct: 131 LQRKAQIIQQHYRGDDPLKKK--IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLI 188 Query: 228 MRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +RDE++H + I Q +E P +E + + +L E E+ Y E + Sbjct: 189 IRDEAVH-GYYIGYKYQKNMEKIPLGQREELKSFAFDLLLELYDNELQYTDELYAETPW- 246 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLF 313 A + ++ + AN+ +G EPLF Sbjct: 247 --ADDVKAFLCYNANKALMNLGYEPLF 271 >gi|309786253|ref|ZP_07680881.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella dysenteriae 1617] gi|308925998|gb|EFP71477.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella dysenteriae 1617] Length = 301 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 50/267 (18%), Positives = 101/267 (37%), Gaps = 25/267 (9%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P +VP+ +D+ W++ + + + L + ++++ ++ Sbjct: 6 TSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIG---APSLMPDAL 62 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P L +F E VH+ ++ I ++L + + A W+ + Sbjct: 63 TPHEEAVLSNISFMEVVHARSYSSIFSTLC-----------QTKDVDAAYAWSEENALLQ 111 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + ++ E FY+GF + K+ A+ + I+R Sbjct: 112 RKAQIIQQHYRGDNPLKKKIASVFI--ESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 169 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE++H + I Q +E E Q++ LLE+ Y +E + Sbjct: 170 DEAVH-GYYIGYKYQKSLEK----ISEAQREELKSFAFDLLLEL-YDNELQYTDELYAET 223 Query: 290 PSCEQYMQFI---ANRRCHQIGLEPLF 313 P + F+ AN+ +G EPLF Sbjct: 224 PWADDVKTFLCYNANKALMNLGYEPLF 250 >gi|1172944|sp|P06474|RIR2_HHV1K RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|807641|gb|AAA66436.1| unknown protein [Human herpesvirus 1] Length = 340 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 63/299 (21%), Positives = 113/299 (37%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 56 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 111 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E HS + I L + + Y P+I AK +W + Sbjct: 112 DILHYYVEQECIEVAHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 171 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 172 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K + + +A +EI + P L Sbjct: 218 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273 Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 332 >gi|222081801|ref|YP_002541166.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium radiobacter K84] gi|221726480|gb|ACM29569.1| ribonucleoside-diphosphate reductase [Agrobacterium radiobacter K84] Length = 329 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 63/279 (22%), Positives = 122/279 (43%), Gaps = 49/279 (17%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF--------ASSESLVANNIV 101 N W+P +VP+ +D+ W + ++++L I+ G + +L+ ++I Sbjct: 37 TGNFWLPEKVPLSNDIPSWAALK--PEEQQLTIRVFTGLTLLDTIQTSIGAPTLMEDSIT 94 Query: 102 L---AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 A+Y ++S F EAVH+ ++ I ++L ++ + YR ++ Sbjct: 95 SHEEAVYSNIS------------FMEAVHARSYSSIFSTL-CSTPDIDDAYR-----WSE 136 Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 N LQ L + G D + + +F+ E FY+GF + K+ Sbjct: 137 ENEHLQRKSALILEQYRNG--DPLKRKIASVFL-----ESFLFYSGFYLPMYWSSRAKLT 189 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----A 274 A+ + I+RDE++H + I Q +E ++E +Q+ + + LLE+ A Sbjct: 190 NTADMIRLIIRDEAVH-GYYIGYKFQRGLER---LSEEGRQEIKDFAFD-LLLELYDNEA 244 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 E + G VGL ++++ + AN+ +G E LF Sbjct: 245 KYTEALYDG-VGLTE-DVKKFLHYNANKALMNLGYEALF 281 >gi|30960837|gb|AAP39230.1| UL40 [Human herpesvirus 1] Length = 307 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 63/299 (21%), Positives = 113/299 (37%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 23 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I K +W + Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRTKVDWLEARVR 138 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + N + K + + +A +EI + P L Sbjct: 185 SRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240 Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299 >gi|229823057|ref|ZP_04449126.1| hypothetical protein GCWU000282_00352 [Catonella morbi ATCC 51271] gi|229787496|gb|EEP23610.1| hypothetical protein GCWU000282_00352 [Catonella morbi ATCC 51271] Length = 336 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 58/281 (20%), Positives = 106/281 (37%), Gaps = 40/281 (14%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W++ L+ ER ++ + G ++L + Sbjct: 38 TWEK---LTEQFWLDTRIPVSNDLDDWRT---LSMAERDVVAKAFGGLTLLDTLQSEEGA 91 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + + F E+VH+ ++ I ++L N E+ I Sbjct: 92 ALMKDFVRTQHEEAVWNNIQFMESVHAKSYSTIFSTL--------NTKAEIEEIFEWTNT 143 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N LQY + + +G + + E FY+GF L NK+ Sbjct: 144 NEQLQYKAKKINEIYQSGHG-------LKIKAASTMLETFLFYSGFFTPLYYLGNNKLAN 196 Query: 220 IAEQYQYIMRDESLH-------LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 +AE + I+RDES+H G + + + + +W E +EA + Sbjct: 197 VAEIIKLIIRDESVHGTYTGYKFQLGYNELPEDQQAELKMWVYELCMD--LYQNEAKYTQ 254 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 Y VG + ++++ AN+ +G +PLF Sbjct: 255 SLYDQ-------VGW-TEKVKVFIRYNANKALQNLGFDPLF 287 >gi|57867410|ref|YP_189075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis RP62A] gi|57638068|gb|AAW54856.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus epidermidis RP62A] Length = 340 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 26/275 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E DL++WK+ L+ DE+ + L ++ + + H Sbjct: 31 WTEEEFKPSKDLSVWKT---LSADEQETYVKALSGLTGLDTTQGTEGMPLLAFHYPEEIW 87 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 R + E +H ++ +I TSL + + + VP AN L L + + Sbjct: 88 RGVFAFMSMMENIHHKSYSHIFTSLLERKDTHYYLKEWVP-----ANKYLNKKTKLITTN 142 Query: 174 FTTGTKD--ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + K D+E + + E F++GF L L KMV E + I+ DE Sbjct: 143 YYKLLKPNPTDREIYVAM-ASSIFLESFLFFSGFYYPLYLAGQGKMVHSGEIIRKIILDE 201 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKGFVGL 287 ++H + G Q+ + ++KE Q+ R L E E+ YA K +GL Sbjct: 202 TIHGS-GTGYAAQVIFDK---FSKEEQEDIRKELMELFDQLYFNEVEYAASLYDK--LGL 255 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +Y+Q+ NR +G E +F NP P+ Sbjct: 256 TEDVI-RYIQYNGNRALMNLGWETVF----NPEPF 285 >gi|145223648|ref|YP_001134326.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium gilvum PYR-GCK] gi|315443974|ref|YP_004076853.1| ribonucleotide reductase subunit beta [Mycobacterium sp. Spyr1] gi|238055306|sp|A4TB76|RIR2H_MYCGI RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|145216134|gb|ABP45538.1| putative ribonucleoside-diphosphate reductase (beta chain) [Mycobacterium gilvum PYR-GCK] gi|315262277|gb|ADT99018.1| ribonucleotide reductase, beta subunit [Mycobacterium sp. Spyr1] Length = 312 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 58/261 (22%), Positives = 111/261 (42%), Gaps = 24/261 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P ++ D A W+S L+ ER R F + E V +I +A R Sbjct: 32 WDPADIDFSRDRADWES---LSTMERDWATRLCAEFIAGEEAVTQDIQPFMAAMRAEGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 YL + AFEEA H+ F+ + ++G+ E +L ++P+ + + + L + Sbjct: 89 GDEMYLTQFAFEEAKHTQVFRMWLDAVGITE-DLQGYLDDLPA------YRQMFYEELPA 141 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA--QILSLGRANKMVGIAEQYQYIMR 229 T + Q ++ + V EGM TG+ + + R + + G+ E + I Sbjct: 142 SLDALATDPSPQAQVRASVTYNHVIEGMMALTGYYAWHRICVDR-HILPGMQELVRRIGD 200 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL-LEIAYA-HETMPKGFVGL 287 DE H+ +G + + WT F+ + ++ A + A+A ++ +P G Sbjct: 201 DERRHMAWGTFTCRRHVAADDANWTV-FEDRMNELIPLALQNTDDAFALYDEIPFGL--- 256 Query: 288 NAPSCEQYMQFIANRRCHQIG 308 + E++ Q+ A++ + G Sbjct: 257 ---TIEEFQQYAADKGMRRFG 274 >gi|257069608|ref|YP_003155863.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Brachybacterium faecium DSM 4810] gi|256560426|gb|ACU86273.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Brachybacterium faecium DSM 4810] Length = 322 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 56/302 (18%), Positives = 110/302 (36%), Gaps = 26/302 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W ++ + + L + + V +++ Sbjct: 30 TGNFWLPEKIPLSNDIQSWSRRSEEEQKMAMHVFTGLTLLDTVQGTVG---AISLIPDAV 86 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 P AF E+VH+ ++ I ++L I +W Q Sbjct: 87 TPHEEAVYTNIAFMESVHAKSYSQIFSTLA-----------NTKQIDEAFHWGATNEQLQ 135 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + D + V V+ E FY+GF + ++ A+ + I+R Sbjct: 136 KKAQIIMSYYEGDDP--EKRKVASVLLESFLFYSGFYLPMRYSSHGELTNTADIIRLIIR 193 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETM-PKGFVGL 287 DE++H + I Q +E + E + + ++L E E Y + P G+ Sbjct: 194 DEAVH-GYYIGYKYQKAVEKLSAERQAELKDYTFSLLMELYDNEEVYTEDIYDPVGWT-- 250 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344 + ++++ AN+ +G E LF NP S + + +FF + Y Sbjct: 251 --EDVKVFLRYNANKALMNLGYEGLFPQEATQVNPAILASLSPNADENHDFFSGSGSSYV 308 Query: 345 QG 346 G Sbjct: 309 MG 310 >gi|30960492|gb|AAP39000.1| UL40 [Human herpesvirus 1] Length = 307 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 63/299 (21%), Positives = 113/299 (37%), Gaps = 29/299 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ TE+ D + + L++ E + F ++++ LV N+ + Sbjct: 23 NRWLETELVFVGD---EEDVSKLSEGELSFYRFLFAFLSAADDLVTENLG-GLSGLFEQK 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQ 167 + Y + Q E VHS + I L + + Y P+I AK +W + Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDWLEARVR 138 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +S + + F+ ++ EG++F FA I L N + + I Sbjct: 139 ECAS--------------VPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE++H + + K + + +A +EI + P L Sbjct: 185 SRDEAVHTTASCYIYTNYLGGH----AKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240 Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + + E Y++F A+R I ++PLF + ++ K NFFE R T Y Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLSLMSTDKHTNFFECRSTSY 299 >gi|296118681|ref|ZP_06837257.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium ammoniagenes DSM 20306] gi|295968170|gb|EFG81419.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium ammoniagenes DSM 20306] Length = 329 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 48/275 (17%), Positives = 104/275 (37%), Gaps = 33/275 (12%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ WK +T E+ R +++ +++ Sbjct: 37 TGNFWLPEKIPVSNDIQSWKK---MTPQEQQATMRVFTGLTLLDTIQGTVGAISLVPDAE 93 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 +F E+VH+ ++ I +L P I W+ + Sbjct: 94 TMHEEAVYTNISFMESVHAKSYSNIFMTLAT-----------TPQINEAFRWSEENENLQ 142 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + V + E FY+GF + L K+ A+ + I+R Sbjct: 143 RKAKIIMSYYRGDDPLKKK--VASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIR 200 Query: 230 DESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 DES+H + G+ +++ K +E++ + ++++ E+ Y + Sbjct: 201 DESVHGYYIGYKYQQGVKKLSEEK-------QQEYKDYTFDLMYDLYENELEYTEDIYDD 253 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +G ++++++ AN+ + +G E LF E Sbjct: 254 --LGWTE-DVKRFLRYNANKALNNLGYEGLFPTDE 285 >gi|9631250|ref|NP_048031.1| small subunit of ribonucleotide reductase [Ateline herpesvirus 3] gi|4019286|gb|AAC95584.1| small subunit of ribonucleotide reductase [Ateline herpesvirus 3] Length = 305 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 73/323 (22%), Positives = 121/323 (37%), Gaps = 53/323 (16%) Query: 44 EKYLSACN-------------NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +KYL C+ N W P++VP+Q D+ + L + + K F Sbjct: 5 KKYLYTCDHIGFLELTKETWKNRWFPSQVPLQGDVC---CVDLLNERDIEFYKFLFTFLG 61 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNMY 149 +E LV NI + + + Y Q E +H + I+ L + E+++ Sbjct: 62 MAEKLVNINIE-DLLGQFESHDISHYYAEQMAMENIHGKVYANILNMLFKNNITEVYSYA 120 Query: 150 REVPSITA---KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 ++ + A K W T T D ++ L +++ EG++F + F Sbjct: 121 HDIMNDCALQEKIRWL---------NGRVTETSDKAEKIL-----LFLLVEGIFFISSFF 166 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN---PHLWTKEFQQKSRT 263 I L M GI YI RDE LH + + N + + P W E Sbjct: 167 SIGLLRVRGIMNGICLANDYIARDEMLHTSAAALLYNTMTKPSERPPEKWIYE------- 219 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPF 320 + EA +E + + G +N Q++Q A+R I L P++ P Sbjct: 220 LFREAVEVEFKFISAKV-HGVSHVNVHEIRQFLQATADRILESINLNPIYHSVPPANCPL 278 Query: 321 PWMSEVIDLKKEKNFFETRVTEY 343 + S K NFFE ++Y Sbjct: 279 VYTSST----KSVNFFERDNSDY 297 >gi|30348565|emb|CAC84357.1| RRsmall [Saimiriine herpesvirus 2] Length = 305 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 73/320 (22%), Positives = 122/320 (38%), Gaps = 47/320 (14%) Query: 44 EKYLSACN-------------NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +KYL C+ N W P++VP+Q D+ + L + + K F Sbjct: 5 KKYLYTCDHVGFLELTKETWKNRWFPSQVPLQGDVC---CVDMLNERDLEFYKFLFTFLG 61 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 +E LV NI + + + Y Q E +H + I++ L + + +Y Sbjct: 62 MAEKLVNINIE-DLLSQFDSHDVSHYYAEQMAMENIHGKVYANILSMLF--KNNITEVYS 118 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 I + ALQ + T + A++ + +++ EG++F + F I Sbjct: 119 YACDIMNDS--ALQEKLKWLNGRVTEASDKAEK------ILLFLLVEGIFFISSFFSIGL 170 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLH 266 M GI YI RDE LH + + N + TK ++ S + Sbjct: 171 FRVRGIMNGICLANDYIARDEMLHTSAAALLYNTM--------TKSSERPSEDWIYKLFR 222 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--EN-PFPWM 323 EA +E + G +N Q++Q A+R I L P++ EN P + Sbjct: 223 EAVEVEFKFI-AAKGHGVSLVNVHEIRQFLQATADRILESINLNPIYGSLPPENCPLAYT 281 Query: 324 SEVIDLKKEKNFFETRVTEY 343 S K NFFE ++Y Sbjct: 282 SST----KSVNFFERDNSDY 297 >gi|296167463|ref|ZP_06849862.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897211|gb|EFG76818.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 305 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 57/259 (22%), Positives = 108/259 (41%), Gaps = 20/259 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P ++ D A W+ LT+DER R F + E V +I ++ R Sbjct: 24 WNPADIDFSRDRADWEQ---LTEDERHYAIRLCAEFIAGEEAVTEDIQPFMSAMRVEGRL 80 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 YL + AFEEA H F+ + ++G+ E +L ++P T + + + L+ Sbjct: 81 GDEMYLTQFAFEEAKHVQVFRMWLDAVGVTE-DLHQYLDDIP--TYRTIFYEELPDCLN- 136 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRD 230 + + A Q ++ + + EGM TG+ + ++ G+ E + I D Sbjct: 137 -ALSVDPSPAAQ--VRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVRRIGDD 193 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA-HETMPKGFVGLNA 289 E H+ +G + + W + + M L+E ++ ++ MP G Sbjct: 194 ERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFSLYDPMPFGL----- 248 Query: 290 PSCEQYMQFIANRRCHQIG 308 S +++MQ+ A++ + G Sbjct: 249 -SVDEFMQYAADKGMRRFG 266 >gi|300932708|ref|ZP_07147964.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium resistens DSM 45100] Length = 331 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 51/267 (19%), Positives = 102/267 (38%), Gaps = 21/267 (7%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + N + + + L + + V +++ Sbjct: 41 NFWLPEKVPLSNDVQSWGTLNEVERQTTMRVFTGLTMLDTIQGTVG---AVSLINDAQTM 97 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 +F E+VH+ ++ I +L P I W+ + + Sbjct: 98 HEEAVYTNISFMESVHAKSYSSIFMTLA-----------STPEINDAFRWSEENEHLQNK 146 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + D Q + V+ E FY+GF + K+ A+ + I+RDE Sbjct: 147 AKIILDFYEGDDP--QKRKIASVLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDE 204 Query: 232 SLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 S+H + I Q +E + E + + +L E E Y + + +G Sbjct: 205 SVH-GYYIGYKYQRAMEQESAARQEELKDHTFDLLLELYDNEAQYTEDLYDE--LGW-TE 260 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++++++ AN+ + +G E LF E Sbjct: 261 DVKRFLRYNANKALNNLGYEGLFPADE 287 >gi|238584957|ref|XP_002390722.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553] gi|215454468|gb|EEB91652.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553] Length = 155 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y W+ Y A + W E+ + DL W N + D+ER I L FFA+S+ Sbjct: 85 LFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDW--NNRMNDNERHFISHVLAFFAASD 142 Query: 94 SLVAN 98 + N Sbjct: 143 GIHEN 147 >gi|259500785|ref|ZP_05743687.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM 13335] gi|259167479|gb|EEW51974.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM 13335] Length = 339 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 26/188 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P ++P+ +DL W N L+ D + +I R +++ A+ +A ++ Sbjct: 49 NFWLPEKIPVSNDLPSW---NSLSKDWQQLITRTFTGLTLLDTIQASIGDVAQIKNAQTD 105 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW-----ALQYT 166 + AF AVH+ ++ G +F+ I NW ALQ Sbjct: 106 HEQAIYANFAFMVAVHARSY-----------GTIFSTLCNSDQIDEAHNWVINNEALQAR 154 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 P +T + V + G Y GF L NK+ A+ + Sbjct: 155 AKALIPYYTGNDPLKSK-------VAAAMMPGFLLYGGFYLPFYLSSRNKLPNTADIIRL 207 Query: 227 IMRDESLH 234 I+RD+ +H Sbjct: 208 ILRDKVIH 215 >gi|302190764|ref|ZP_07267018.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus iners AB-1] gi|309804064|ref|ZP_07698145.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 11V1-d] gi|309804878|ref|ZP_07698940.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 09V1-c] gi|309807870|ref|ZP_07701802.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 01V1-a] gi|309809732|ref|ZP_07703586.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners SPIN 2503V10-D] gi|312871305|ref|ZP_07731403.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 3008A-a] gi|312872703|ref|ZP_07732768.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2062A-h1] gi|312873302|ref|ZP_07733357.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2052A-d] gi|312874885|ref|ZP_07734904.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2053A-b] gi|315654122|ref|ZP_07907038.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus iners ATCC 55195] gi|325912248|ref|ZP_08174645.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners UPII 143-D] gi|325913678|ref|ZP_08176040.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners UPII 60-B] gi|329919824|ref|ZP_08276775.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners SPIN 1401G] gi|308163832|gb|EFO66098.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 11V1-d] gi|308165817|gb|EFO68038.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 09V1-c] gi|308168972|gb|EFO71058.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 01V1-a] gi|308169911|gb|EFO71950.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners SPIN 2503V10-D] gi|311089630|gb|EFQ48055.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2053A-b] gi|311091182|gb|EFQ49571.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2052A-d] gi|311091745|gb|EFQ50124.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2062A-h1] gi|311093319|gb|EFQ51665.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 3008A-a] gi|315488818|gb|EFU78464.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus iners ATCC 55195] gi|325475907|gb|EGC79076.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners UPII 143-D] gi|325477037|gb|EGC80187.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners UPII 60-B] gi|328937171|gb|EGG33599.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners SPIN 1401G] Length = 337 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 26/188 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P ++P+ +DL W N L+ D + +I R +++ A+ +A ++ Sbjct: 47 NFWLPEKIPVSNDLPSW---NSLSKDWQQLITRTFTGLTLLDTIQASIGDVAQIKNAQTD 103 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW-----ALQYT 166 + AF AVH+ ++ G +F+ I NW ALQ Sbjct: 104 HEQAIYANFAFMVAVHARSY-----------GTIFSTLCNSDQIDEAHNWVINNEALQAR 152 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 P +T + V + G Y GF L NK+ A+ + Sbjct: 153 AKALIPYYTGNDPLKSK-------VAAAMMPGFLLYGGFYLPFYLSSRNKLPNTADIIRL 205 Query: 227 IMRDESLH 234 I+RD+ +H Sbjct: 206 ILRDKVIH 213 >gi|85057306|ref|YP_456222.1| ribonucleotide-diphosphate reductase subunit beta [Aster yellows witches'-broom phytoplasma AYWB] gi|84789411|gb|ABC65143.1| ribonucleoside-diphosphate reductase beta chain [Aster yellows witches'-broom phytoplasma AYWB] Length = 350 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 65/284 (22%), Positives = 118/284 (41%), Gaps = 28/284 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P ++ +Q DLA W LT +E+ RNL ++ + + I R L E Sbjct: 41 WRPEDISLQGDLAAWSE---LTIEEKTAYSRNLLVLTFLDTYQGDLGMPIIARSLEEHEH 97 Query: 114 RQYL---LRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQT 168 ++ A E AVH+ ++ I S ++ +LF + S+ ++ + Sbjct: 98 QKKATLNFMGAMENAVHAKSYSNIFMSYLTNKEINQLFLWGNQQKSLQTMMQVIVKVYEA 157 Query: 169 LSSPSFTTGTKDADQEFLQDLF--------VFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 L + K +F++ F V E FY+GF L K++ Sbjct: 158 LEDQIYLK--KQTSLQFIELEFKKTQWKAMAVSVFLETWLFYSGFYYPLYFYGQGKLMQS 215 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET- 279 E I+RDES+H G+ + ++ E L+ K +Q +T L + L++ Y +T Sbjct: 216 GEIINLIIRDESIH---GV-YVGRLATELYQLFDKPTKQTLKTWLDD--LMQQLYQTKTS 269 Query: 280 -MPKGFVGLN-APSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 + + LN +++++ AN+ +G + F +EN P Sbjct: 270 LVNAIYHKLNLEDDVNKFVRYNANKALMNLGFDAFFP-SENVNP 312 >gi|322411231|gb|EFY02139.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 337 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 26/191 (13%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +DL W+S L +D + +I RN +++ A +A +H Sbjct: 44 VTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRNYTGLTLLDTVQATVGDVAQIQHS 100 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF A+H+ ++ I ++L E I W + TQ+ Sbjct: 101 QTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148 Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L + + TG + V + G Y GF L KM ++ Sbjct: 149 LQERARVLIPYYTGNDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202 Query: 224 YQYIMRDESLH 234 + I+RD+ +H Sbjct: 203 IRLILRDKVIH 213 >gi|159146681|gb|ABW90785.1| ribonucleotide reductase subunit 2 [Leporid herpesvirus 4] Length = 316 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 68/305 (22%), Positives = 119/305 (39%), Gaps = 41/305 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ +E+ D + + L+ +E + F ++++ LV + + S Sbjct: 32 NRWLESELVFSGD---ERDVDKLSPEELDFYRFLFTFLSAADDLVTEELG-RLSSLFSQK 87 Query: 112 ECRQYLLRQAFEEAVHSHTFQYI-ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 + Y + Q E VHS + I + DE TA+ N+ T+ Sbjct: 88 DILHYYVEQECIEVVHSRVYSIIQMVLFKSDE-------------TARRNYV---ANTVH 131 Query: 171 SPSFTTGTK-----DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 S + + D + + F+ ++ EG++F FA I L N + + Sbjct: 132 SSAIQPKVRWLEARVRDCPSVPEKFILMILIEGIFFAASFAAIAFLRTHNILKVTCQSND 191 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP---K 282 I RDE++H + N + + K ++ + + A +EIA+ P + Sbjct: 192 LISRDEAVHTTASCCLYNNYLGQ----YAKPPSERIKQLFSNAVEIEIAFIKAKAPANSR 247 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP----FPWMSEVIDLKKEKNFFET 338 G + E Y++F A+R IG LF E P FP ++ +K NFFE Sbjct: 248 ILDGAAIAAIESYVRFSADRLLKLIGEPALFD--EPPPNDGFPL--RLMSTEKHTNFFEC 303 Query: 339 RVTEY 343 R T Y Sbjct: 304 RSTAY 308 >gi|325002633|ref|ZP_08123745.1| ribonucleotide reductase [Pseudonocardia sp. P1] Length = 255 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 46/218 (21%), Positives = 86/218 (39%), Gaps = 42/218 (19%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 A + W TE+ +D A W + LT+ E + + F +E+ VA L Y+ Sbjct: 14 AASLQWDETEIDFSEDRAAWPA---LTEWEHERVLGLIAGFCIAETSVAGQ--LGSYQAA 68 Query: 109 SNPECRQYLLR-QAFEEAVHSHTFQYIITSLGLDEG----------------ELFNMYRE 151 + + + R QA +EA H+ F + + + G EL +++ Sbjct: 69 AREDSMEAAFRAQARDEARHARFFDRVASDVAGIPGANPAARQDVLRAQVGAELVDLFEH 128 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 TA+ Q P+ TG + ++++V EG+ G +L Sbjct: 129 RLPATAR--------QLAEDPAGLTGA----------VGLYHMVIEGVVLLAGQHAMLDT 170 Query: 212 --GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 G + + G+ + + ++RDE H+ FG ++ I Sbjct: 171 LEGLSRPLPGVRKGMELVLRDERWHIGFGSRIVQCADI 208 >gi|237784654|ref|YP_002905359.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium kroppenstedtii DSM 44385] gi|237757566|gb|ACR16816.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium kroppenstedtii DSM 44385] Length = 350 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 49/256 (19%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +D++ W N L DD R L +K G L + V A + Sbjct: 42 TGNFWLPEKVPLSNDISSW---NSLPDDLRQLTVKIFTG-------LTLLDTVQATVGEV 91 Query: 109 SN-PECRQ-----YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 S P+ R AF ++VH+ ++ + ++L P IT WA Sbjct: 92 SQIPDGRTEHEQAVYTNIAFMQSVHARSYSSVFSTLC-----------STPEITDAYGWA 140 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Q T+ TT K V + + Y GF L L K++ A+ Sbjct: 141 TQ--NTVLQRRATTVMKHYYARDPLKRKVAATLLSSLLLYAGFYLPLWLSCRAKLMNTAD 198 Query: 223 QYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 + I+RD+++H + G+D + K E Q+ + +++ E LE Y Sbjct: 199 MIRLILRDKAVHGYYSGYKFQRGLDAHPERK--------NELQEFTYSLVDELLNLEKIY 250 Query: 276 AHETMPKGFVGLNAPS 291 + E + G+ AP+ Sbjct: 251 SGEL----YGGITAPN 262 >gi|219556030|ref|ZP_03535106.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T17] gi|289568136|ref|ZP_06448363.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T17] gi|289541889|gb|EFD45538.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T17] Length = 210 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I ++ R YL + AFEEA H+ F+ + ++G+ E +L ++ Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128 Query: 153 PS 154 P+ Sbjct: 129 PA 130 >gi|226438223|pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS Length = 323 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 28 LPLKL------FAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 78 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I ++ R YL + AFEEA H+ F+ + ++G+ E +L ++ Sbjct: 79 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 137 Query: 153 PS 154 P+ Sbjct: 138 PA 139 >gi|218296962|ref|ZP_03497648.1| ribonucleotide reductase [Thermus aquaticus Y51MC23] gi|218242665|gb|EED09201.1| ribonucleotide reductase [Thermus aquaticus Y51MC23] Length = 323 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 59/257 (22%), Positives = 112/257 (43%), Gaps = 34/257 (13%) Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 +Y PE + + A E H++ + +++ LGL EG E + +A AL Sbjct: 75 VYDRFPKPEVAEVGMTFAESEVRHANAYAHLLDLLGL-EGRFARYLEEATPLRDRAG-AL 132 Query: 164 QYTQTLSSPSFTTGTKDAD-QEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIA 221 + +K+A +E+ L +F E + ++ F +++L R AN+ GIA Sbjct: 133 E--------GVLARSKNASLEEYALSLLLFSAFVEHISLFSQFYALMALNRRANRFKGIA 184 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + ++E++H FG++++ ++ E P L+ + F ++ +L A E+ A E + Sbjct: 185 NAVEATSKEENIHGLFGVELLRLLREERPELFGEAFVEE---VLRAAQ--ELFRAEEALV 239 Query: 282 K-GFVGLNAP--SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID---------- 328 F G + P E+ ++F+ +R + L L PF EV+ Sbjct: 240 DWIFAGGDTPWVRGEEVLEFVKDRYNQVLALHGL----PGPFQVRDEVLKDTAWFALELL 295 Query: 329 LKKEKNFFETRVTEYQQ 345 K+ +FF R Y + Sbjct: 296 ADKDVDFFNKRSVAYAR 312 >gi|213585578|ref|ZP_03367404.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 189 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 20/163 (12%) Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYRE 151 S PE ++ AF E +HS ++ +II ++ D +F+ Y E Sbjct: 1 SIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDE 60 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + +T+ + + T T++ + ++ ++ L E + FY FA + Sbjct: 61 LIEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNA-LEAIRFYVSFACSFAF 119 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL 252 M G A+ + I RDE+LHL ++N ++ +++P + Sbjct: 120 AERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEM 162 >gi|256844583|ref|ZP_05550068.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] gi|256613124|gb|EEU18328.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] Length = 276 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +D++ W N L+DD + +I R L +++S V + V I Sbjct: 51 NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 105 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 ++ E Y AF AVH+ ++ I ++L E ++ + V + N ALQ Sbjct: 106 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 158 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 P +T + V + G Y GF L K+ A+ + I+ Sbjct: 159 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 211 Query: 229 RDESLH 234 RD+ +H Sbjct: 212 RDKVIH 217 >gi|15607374|ref|NP_214747.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Rv] gi|148659997|ref|YP_001281520.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|167968770|ref|ZP_02551047.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|306774323|ref|ZP_07412660.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu001] gi|306974656|ref|ZP_07487317.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu010] gi|307082365|ref|ZP_07491535.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu011] gi|307082709|ref|ZP_07491822.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu012] gi|81556745|sp|P96416|RIR2H_MYCTU RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|238055310|sp|A5TYV8|RIR2H_MYCTA RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|1871607|emb|CAB07000.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB (RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium tuberculosis H37Rv] gi|148504149|gb|ABQ71958.1| ribonucleoside-diphosphate reductase subunit beta NrdB [Mycobacterium tuberculosis H37Ra] gi|308217156|gb|EFO76555.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu001] gi|308356059|gb|EFP44910.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu010] gi|308360014|gb|EFP48865.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu011] gi|308367580|gb|EFP56431.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu012] Length = 314 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWHPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I ++ R YL + AFEEA H+ F+ + ++G+ E +L ++ Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128 Query: 153 PS 154 P+ Sbjct: 129 PA 130 >gi|48696469|ref|YP_024511.1| putative ribonucleotide reductase minor subunit [Staphylococcus phage K] gi|37729163|gb|AAO47530.1| ORF81 [Staphylococcus phage K] gi|119658118|gb|ABL87153.1| putative ribonucleotide reductase minor subunit [Staphylococcus phage 812] gi|182627942|gb|ACB89104.1| gp ORF111 [Staphylococcus phage A5W] Length = 349 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 73/322 (22%), Positives = 126/322 (39%), Gaps = 41/322 (12%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WE+ +S W P E + DL+ W N LT+ E+ K+ L ++ + Sbjct: 33 WEQGISQF---WTPEEFDVSRDLSSW---NSLTESEKNTYKKVLAGLTGLDTKQGGEGMN 86 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMYREVPSITAK 158 + H P+ + E +H+ ++ +I T+L L E L E + K Sbjct: 87 LVSYHEPRPKYQAVFAFMGGMEEIHAKSYSHIFTTL-LSNKETSYLLDTWVEENDFLKVK 145 Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 A + Y L P+ T + + V E FY+GF L L +M Sbjct: 146 AQFIGYYYDQLLKPNPTIFDRYMAK-------VASAFLESALFYSGFYYPLLLAGRGQMT 198 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 I +DE+ H + + + Q + +L T+E ++++ +E LL+I Y +E Sbjct: 199 QSGAIIYKITQDEAYHGS-AVGLTAQY---DYNLLTEEEKKQADKETYE--LLDILYTNE 252 Query: 279 TMPKGFVGLNAP-----SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV-----ID 328 L P Y+Q+ NR +G E F NP P+ V +D Sbjct: 253 VAYTH--SLYDPLELSEDVINYVQYNFNRALQNLGREDYF----NPEPYNPIVENQTNVD 306 Query: 329 LKKEKNFFETRVTEYQQGAELK 350 + +FF + +Y++ +K Sbjct: 307 RLRNVDFFSGKA-DYEKSTNIK 327 >gi|269864086|ref|XP_002651449.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064500|gb|EED42605.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 130 Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIV 101 +V N+V Sbjct: 95 GIVNENLV 102 >gi|296169397|ref|ZP_06851020.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895947|gb|EFG75639.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 313 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 6/103 (5%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P + D A W++ L+D ER+ + R F + E V +I +A R Sbjct: 32 WDPANIDFSRDSADWEA---LSDRERVYVTRLCAGFIAGEEAVTQDIQPFMAAMRAEGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 YL + AFEEA H+ F+ + ++G+ + +L + + P+ Sbjct: 89 GDEMYLTQFAFEEAKHTQAFRLWLDAVGVRD-DLHSFLDQTPA 130 >gi|269865992|ref|XP_002652118.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063125|gb|EED41939.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 134 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIV 101 +V N+V Sbjct: 95 GIVNENLV 102 >gi|306806029|ref|ZP_07442697.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu007] gi|306970425|ref|ZP_07483086.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu009] gi|308347482|gb|EFP36333.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu007] gi|308352109|gb|EFP40960.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu009] Length = 323 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 87/228 (38%), Gaps = 29/228 (12%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I ++ R YL + AFEEA H+ F+ + ++G+ E +L ++ Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128 Query: 153 PS----ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-- 206 P+ A+ L SP+ + + EGM TG+ Sbjct: 129 PAYRQIFYAELPECLNALSADPSPAAQVRAS----------VTYNHIVEGMLALTGYYAW 178 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + + RA + G+ E + I DE H+ +G + + WT Sbjct: 179 HKICVERA-ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWT 225 >gi|269863385|ref|XP_002651202.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|269865188|ref|XP_002651836.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063788|gb|EED42221.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064957|gb|EED42855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 111 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIV 101 +V N+V Sbjct: 95 GIVNENLV 102 >gi|306795820|ref|ZP_07434122.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu006] gi|308343762|gb|EFP32613.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu006] Length = 314 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 87/228 (38%), Gaps = 29/228 (12%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I ++ R YL + AFEEA H+ F+ + ++G+ E +L ++ Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128 Query: 153 PS----ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-- 206 P+ A+ L SP+ + + EGM TG+ Sbjct: 129 PAYRQIFYAELPECLNALSADPSPAAQVRAS----------VTYNHIVEGMLALTGYYAW 178 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + + RA + G+ E + I DE H+ +G + + WT Sbjct: 179 HKICVERA-ILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWT 225 >gi|254233615|ref|ZP_04926941.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis C] gi|124603408|gb|EAY61683.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis C] Length = 321 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I ++ R YL + AFEEA H+ F+ + ++G+ E +L ++ Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128 Query: 153 PS 154 P+ Sbjct: 129 PA 130 >gi|15839613|ref|NP_334650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CDC1551] gi|31791410|ref|NP_853903.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis AF2122/97] gi|121636145|ref|YP_976368.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148821426|ref|YP_001286180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis F11] gi|215406230|ref|ZP_03418411.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|215414101|ref|ZP_03422758.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|215425440|ref|ZP_03423359.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T92] gi|215433154|ref|ZP_03431073.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|215448517|ref|ZP_03435269.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|218755972|ref|ZP_03534768.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis GM 1503] gi|224988618|ref|YP_002643305.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253797156|ref|YP_003030157.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 1435] gi|260199231|ref|ZP_05766722.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T46] gi|260203377|ref|ZP_05770868.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis K85] gi|289441609|ref|ZP_06431353.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T46] gi|289552485|ref|ZP_06441695.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 605] gi|289572811|ref|ZP_06453038.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis K85] gi|289748002|ref|ZP_06507380.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289748709|ref|ZP_06508087.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T92] gi|289756298|ref|ZP_06515676.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289760339|ref|ZP_06519717.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|289764349|ref|ZP_06523727.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis GM 1503] gi|297632713|ref|ZP_06950493.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN 4207] gi|297729687|ref|ZP_06958805.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN R506] gi|298527626|ref|ZP_07015035.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis 94_M4241A] gi|306779065|ref|ZP_07417402.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu002] gi|306782854|ref|ZP_07421176.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu003] gi|306787222|ref|ZP_07425544.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu004] gi|306791778|ref|ZP_07430080.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu005] gi|306801818|ref|ZP_07438486.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu008] gi|313657013|ref|ZP_07813893.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN V2475] gi|81422934|sp|Q7U2I1|RIR2H_MYCBO RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|238055305|sp|A1KF53|RIR2H_MYCBP RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|13879730|gb|AAK44464.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Mycobacterium tuberculosis CDC1551] gi|31616995|emb|CAD93102.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB (RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium bovis AF2122/97] gi|121491792|emb|CAL70254.1| Probable ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148719953|gb|ABR04578.1| ribonucleoside-diphosphate reductase beta subunit nrdB [Mycobacterium tuberculosis F11] gi|224771731|dbj|BAH24537.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253318659|gb|ACT23262.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 1435] gi|289414528|gb|EFD11768.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T46] gi|289437117|gb|EFD19610.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 605] gi|289537242|gb|EFD41820.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis K85] gi|289688530|gb|EFD56018.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289689296|gb|EFD56725.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T92] gi|289696885|gb|EFD64314.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289711855|gb|EFD75871.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis GM 1503] gi|289715903|gb|EFD79915.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|298497420|gb|EFI32714.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis 94_M4241A] gi|308327916|gb|EFP16767.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu002] gi|308332374|gb|EFP21225.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu003] gi|308336125|gb|EFP24976.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu004] gi|308339757|gb|EFP28608.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu005] gi|308351381|gb|EFP40232.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu008] gi|323717223|gb|EGB26432.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis CDC1551A] gi|326905988|gb|EGE52921.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis W-148] gi|328456943|gb|AEB02366.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 4207] Length = 314 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I ++ R YL + AFEEA H+ F+ + ++G+ E +L ++ Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128 Query: 153 PS 154 P+ Sbjct: 129 PA 130 >gi|226331040|ref|ZP_03806558.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198] gi|225201835|gb|EEG84189.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198] Length = 182 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 20/156 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P ++P+ +D+ W + LT E+ + R +++ + P Sbjct: 32 NFWLPEKIPLSNDIPSWST---LTQAEKQLTIRVFTGLTLLDTIQNTVGAPTLMPDALTP 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTL 169 L F EAVH+ ++ I ++L L D E + E P + KA L+Y Q Sbjct: 89 HEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDEAYRWSEENPYLQKKAEIILRYYQ-- 146 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 D++ L+ + V E FY+GF Sbjct: 147 ------------DEDPLKKK-IASVFLESFLFYSGF 169 >gi|294994707|ref|ZP_06800398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 210] Length = 317 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 29/212 (13%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I ++ R YL + AFEEA H+ F+ + ++G+ E +L ++ Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128 Query: 153 PS----ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-- 206 P+ A+ L SP+ + + EGM TG+ Sbjct: 129 PAYRQIFYAELPECLNALSADPSPAAQVRAS----------VTYNHIVEGMLALTGYYAW 178 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + + RA + G+ E + I DE H+ +G Sbjct: 179 HKICVERA-ILPGMQELVRRIGDDERRHMAWG 209 >gi|269862477|ref|XP_002650854.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220065515|gb|EED43201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 122 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y + W EV M D + + LT +E+ IK L FFA+S+ Sbjct: 38 IFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASD 94 Query: 94 SLVANNIV 101 +V N+V Sbjct: 95 GIVNENLV 102 >gi|260185097|ref|ZP_05762571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CPHL_A] gi|289445765|ref|ZP_06435509.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis CPHL_A] gi|289418723|gb|EFD15924.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis CPHL_A] Length = 314 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I ++ R YL + AFEEA H+ F+ + ++G+ E +L ++ Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128 Query: 153 PS 154 P+ Sbjct: 129 PA 130 >gi|254549173|ref|ZP_05139620.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 311 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 83/212 (39%), Gaps = 29/212 (13%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ D A W+ L+DDER R F + E Sbjct: 19 LPLKL------FAGGNAKFWDPADIDFTRDRADWEK---LSDDERDYATRLCTQFIAGEE 69 Query: 95 LVANNI--VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V +I ++ R YL + AFEEA H+ F+ + ++G+ E +L ++ Sbjct: 70 AVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE-DLHRYLDDL 128 Query: 153 PS----ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-- 206 P+ A+ L SP+ + + EGM TG+ Sbjct: 129 PAYRQIFYAELPECLNALSADPSPAAQVRAS----------VTYNHIVEGMLALTGYYAW 178 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + + RA + G+ E + I DE H+ +G Sbjct: 179 HKICVERA-ILPGMQELVRRIGDDERRHMAWG 209 >gi|171779598|ref|ZP_02920554.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281700|gb|EDT47134.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 138 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 6/98 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+ L+D E+ ++ + G +++ + + V Sbjct: 21 TWEKL---TEQFWLDTRIPLSNDLDDWRK---LSDQEKDLVGKVFGGLTLLDTMQSESGV 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 AI + P L F E+VH+ ++ I ++L Sbjct: 75 EAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLN 112 >gi|284046663|ref|YP_003397003.1| ribonucleotide reductase [Conexibacter woesei DSM 14684] gi|283950884|gb|ADB53628.1| ribonucleotide reductase [Conexibacter woesei DSM 14684] Length = 306 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 46/210 (21%), Positives = 79/210 (37%), Gaps = 11/210 (5%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 WE+ HW ++ D W + ++ER L F E VA + Sbjct: 43 WER------QHWAVQDLDFTQDKLDWHER--FDEEERFARMYGLSAFFIGEQRVAAELG- 93 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 + R + R +L Q +EA H F + + + E S + Sbjct: 94 PLMRAAPQEDMRLFLCTQIADEARHVAFFDRFYSEVDVLGVEGLEEKLAATSEHLNPEFG 153 Query: 163 LQYTQTLSSPSFTTGTKDADQEFL-QDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGI 220 + + + L S T+ D E L + + ++++V EGM TG I+ R + G Sbjct: 154 VLFDEMLKSRVDRLATEPEDLETLVEAITIYHMVIEGMLALTGQHFIIDYNEREGTLPGF 213 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENP 250 E + + RDE H+ FG + + +P Sbjct: 214 VEGFINVARDEHRHVAFGARFLRDMARSDP 243 >gi|149408186|ref|YP_001294620.1| hypothetical protein ORF027 [Pseudomonas phage PA11] Length = 322 Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust. Identities = 51/245 (20%), Positives = 96/245 (39%), Gaps = 40/245 (16%) Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL---SSPSFTTGT 178 FE VH+ + I +L L+ E + Y P + + +++ +L P ++ G Sbjct: 98 FELNVHAPFYNKINEALMLNTDEFYLAYVNDPILKER----MEFVDSLVEEDDPLYSLGA 153 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQI--LSLGRANKMVGIAEQYQYIMRDESLHLN 236 + + EG Y+ FA + NK++ + + +RDE+LH Sbjct: 154 --------------FSMVEGAVLYSSFAFLKHFQAKGKNKLMNVVRGINFSVRDENLHCE 199 Query: 237 FGIDVINQIKIE--------NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 G + N +K E NP+L HE ++++ + M G+ Sbjct: 200 GGAWLYNTLKQEIKSEGGYINPNLEYDLANCAHTIAEHEFRIVDMIFEKGEME----GIT 255 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFP-WMSEVIDLKKEKNFFETRVTEYQQGA 347 A + +++ N Q+G+EP+F+ + N W + I+ +FF Y + Sbjct: 256 AEQMKTFVKSRVNICLAQLGIEPVFEVSNNIVAEWFYDGINGVMFHDFFSGIGNSYNR-- 313 Query: 348 ELKWD 352 WD Sbjct: 314 --SWD 316 >gi|29135241|ref|NP_803871.1| ORF305 [Pseudomonas phage phiKZ] gi|18996770|gb|AAL83206.1|AF399011_305 PHIKZ305 [Pseudomonas phage phiKZ] Length = 387 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 7/136 (5%) Query: 182 DQEFLQDLFVFYVVF---EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE-SLHLNF 237 DQE +F+F++ E + F FA ++GR IA + I +DE +H + Sbjct: 182 DQELYNKVFMFFIALYFLERIQFMASFAVTFAIGRTGAFQQIAAAVKKIAQDEFEIHAQY 241 Query: 238 GIDVINQ-IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQ 294 G +VI + E L + + K +L E E+ + + +G G+NA Sbjct: 242 GQEVIRALLATERGKLAYSQCKDKIIELLWEIVKTEVTWINYLFSEGRELTGVNATKLIN 301 Query: 295 YMQFIANRRCHQIGLE 310 ++ F AN + +E Sbjct: 302 WVLFNANAAATFLSIE 317 >gi|10140982|ref|NP_065559.1| ribonucleotide-reductase, small subunit [Alcelaphine herpesvirus 1] gi|81984051|sp|O36410|RIR2_ALHV1 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|2338023|gb|AAC58107.1| ribonucleotide-reductase, small subunit [Alcelaphine herpesvirus 1] Length = 305 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 73/324 (22%), Positives = 121/324 (37%), Gaps = 51/324 (15%) Query: 44 EKYLSACN-------------NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +KYL C+ N W P ++ + D+ K + +++ + K F Sbjct: 5 KKYLYVCDHPGFFELTQETFQNRWFPAQINLSVDV---KCLSLMSEADVNFYKYLFTFLG 61 Query: 91 SSESLVANNIVLAIYRHLSNPEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEG---- 143 +E+LV NI L + EC + Y Q E VH + I+ L + Sbjct: 62 MAETLVNFNID----ELLVDFECHDIKHYYCEQMAMECVHGKVYFNILNMLFKNNLAATW 117 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E + ++ K W L S TK + + +FY++ EG++F + Sbjct: 118 EFAEAVLKDEALQKKLEW-------LESKIKMAKTKA------EKVLIFYLI-EGVFFIS 163 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKS 261 F I L M G+ YI RDE LH + N + K E P + Sbjct: 164 SFYCIGLLRVKGVMPGVCMANDYISRDELLHTRAAALLYNTMIPKEERPS------SEWV 217 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 ++ EA +E A+ E K ++ +++ A+R + I L P + ++ P Sbjct: 218 VSLFKEAVEIECAFI-EAKTKQVTFVSMDDIRAFLEATADRLLNSIEL-PRYYKSDPPQS 275 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQ 345 K +FFE TEY Sbjct: 276 CPLTYTGCIKNVSFFERESTEYSS 299 >gi|9626016|ref|NP_040262.1| ribonucleotide reductase, small subunit [Saimiriine herpesvirus 2] gi|266917|sp|Q01038|RIR2_SHV21 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|66391|pir||WMBEP5 ribonucleoside-diphosphate reductase (EC 1.17.4.1) small chain - saimiriine herpesvirus 1 (strain 11) gi|60381|emb|CAA45683.1| ribonucleotide reductase, small subunit [Saimiriine herpesvirus 2] gi|330989|gb|AAA46136.1| ribonucleotide reductase small subunit [Saimiriine herpesvirus 2] Length = 305 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 76/322 (23%), Positives = 124/322 (38%), Gaps = 51/322 (15%) Query: 44 EKYLSACN-------------NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +KYL C+ N W P++VP+Q D+ + L + + K F Sbjct: 5 KKYLYTCDHVGFLELTKETWKNRWFPSQVPLQGDVC---CVDMLNERDLEFYKFLFTFLG 61 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 +E LV NI + + + Y Q E +H + I+ L + + +Y Sbjct: 62 MAEKLVNINIE-DLLSQFDSHDISHYYAEQMAMENIHGKVYANILNMLF--KNNITEVYS 118 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 I + ALQ + T + A++ + +++ EG++F + F I Sbjct: 119 YACDIMNDS--ALQEKLRWLNGRVTEASDKAEK------ILLFLLVEGIFFISSFFSIGL 170 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLH 266 M GI YI RDE LH + + N + TK ++ S + Sbjct: 171 FRVRGIMNGICLANDYIARDEMLHTSAAALLYNTM--------TKSSERPSEDWIYKLFR 222 Query: 267 EATLLEIAYAHETMPKGF-VGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYT--EN-PFP 321 EA +E + KG+ V L N Q++Q A+R I L P++ EN P Sbjct: 223 EAVEVEFKF---IAAKGYGVSLVNVHEIRQFLQATADRILESINLNPIYGSLPPENCPLA 279 Query: 322 WMSEVIDLKKEKNFFETRVTEY 343 + S K NFFE ++Y Sbjct: 280 YTSST----KSVNFFERDNSDY 297 >gi|326803224|ref|YP_004321042.1| ribonucleoside-diphosphate reductase, beta subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650868|gb|AEA01051.1| ribonucleoside-diphosphate reductase, beta subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 337 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 64/274 (23%), Positives = 104/274 (37%), Gaps = 29/274 (10%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIY 105 N W+P +P+ +DL W N L DD + +I R L + +S + + V I Sbjct: 44 VTQNFWLPENIPVSNDLPSW---NELDDDWQQLITRTFTGLTLLDTVQSSIGD--VAQIK 98 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 L+ E Y AF VH+ ++ I ++L E I W + Sbjct: 99 NSLTEQEQVIY-ANFAFMVGVHARSYGTIFSTLCTSE-----------QIEEAHEWVVDN 146 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 + P AD + + G Y GF L K+ ++ + Sbjct: 147 EALQARPKALIPFYTADDPLKSKIAA--ALMPGFLLYGGFYLPFYLSARGKLPNTSDIIR 204 Query: 226 YIMRDESLHLNFGIDVINQIKIE--NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 I+RD+ +H NF Q+K+ +P E +Q +L + LE Y H+ + G Sbjct: 205 LILRDKVIH-NFYSGYKYQLKVAKLSPEK-QAEMKQFVFDLLDKMIGLEKTYLHQ-LYDG 261 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 F GL A ++ + A + +G E F E Sbjct: 262 F-GL-ADEAIRFSLYNAGKFLQNLGYESPFTKEE 293 >gi|300362830|ref|ZP_07059004.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus gasseri JV-V03] gi|300353120|gb|EFJ68994.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus gasseri JV-V03] Length = 340 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +D++ W N L+DD + +I R L +++S V + V I Sbjct: 50 NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 104 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 ++ E Y AF AVH+ ++ I ++L E ++ + V + N ALQ Sbjct: 105 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 157 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 P +T + V + G Y GF L K+ A+ + I+ Sbjct: 158 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 210 Query: 229 RDESLH 234 RD+ +H Sbjct: 211 RDKVIH 216 >gi|323467364|gb|ADX71051.1| Ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus helveticus H10] Length = 340 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +D++ W N L+DD + +I R L +++S V + V I Sbjct: 50 NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 104 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 ++ E Y AF AVH+ ++ I ++L E ++ + V + N ALQ Sbjct: 105 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 157 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 P +T + V + G Y GF L K+ A+ + I+ Sbjct: 158 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 210 Query: 229 RDESLH 234 RD+ +H Sbjct: 211 RDKVIH 216 >gi|312984313|ref|ZP_07791656.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus CTV-05] gi|310894278|gb|EFQ43357.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus CTV-05] Length = 335 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +D++ W N L+DD + +I R L +++S V + V I Sbjct: 45 NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 99 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 ++ E Y AF AVH+ ++ I ++L E ++ + V + N ALQ Sbjct: 100 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 152 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 P +T + V + G Y GF L K+ A+ + I+ Sbjct: 153 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 205 Query: 229 RDESLH 234 RD+ +H Sbjct: 206 RDKVIH 211 >gi|238852996|ref|ZP_04643394.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 202-4] gi|282851729|ref|ZP_06261093.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 224-1] gi|238834391|gb|EEQ26630.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 202-4] gi|282557132|gb|EFB62730.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 224-1] Length = 335 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +D++ W N L+DD + +I R L +++S V + V I Sbjct: 45 NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 99 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 ++ E Y AF AVH+ ++ I ++L E ++ + V + N ALQ Sbjct: 100 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 152 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 P +T + V + G Y GF L K+ A+ + I+ Sbjct: 153 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 205 Query: 229 RDESLH 234 RD+ +H Sbjct: 206 RDKVIH 211 >gi|126437012|ref|YP_001072703.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. JLS] gi|238055308|sp|A3Q4Y5|RIR2H_MYCSJ RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|126236812|gb|ABO00213.1| putative ribonucleotide reductase small chain [Mycobacterium sp. JLS] Length = 312 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 56/260 (21%), Positives = 110/260 (42%), Gaps = 22/260 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P ++ D A W+S + L ER R F + E V +I +A R Sbjct: 32 WDPADIDFSKDRADWESLSNL---ERDWATRLCAQFIAGEEAVTQDIQPFMAAMRAEGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 YL + AFEEA H+ F+ + ++G+ + +L ++PS + + + L + Sbjct: 89 GDEMYLTQFAFEEAKHTQVFRMWLDAVGMTD-DLQCYLDDLPS------YRQMFYEELPA 141 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRD 230 T + ++ + V EGM TG+ + K++ G+ E + I D Sbjct: 142 SLEALATDPSPAAQVRASATYNHVIEGMMALTGYYAWHRICVDRKVLPGMQELVRRIGDD 201 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA-TLLEIAYA-HETMPKGFVGLN 288 E H+ +G + + W + F+ + ++ A + + ++A ++ +P GF Sbjct: 202 ERRHMAWGTFTCRRHVAADDANW-EVFENRMNELIPLALSNTDDSFALYDEIPFGFAK-- 258 Query: 289 APSCEQYMQFIANRRCHQIG 308 E++ Q+ A++ + G Sbjct: 259 ----EEFQQYAADKGMRRFG 274 >gi|157135887|ref|XP_001663605.1| hypothetical protein AaeL_AAEL013412 [Aedes aegypti] gi|108870103|gb|EAT34328.1| conserved hypothetical protein [Aedes aegypti] Length = 244 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 8/106 (7%) Query: 58 EVPMQDDLALW-KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 EV + DLA W K K+G E+ I L FF +S+ + N+V + L E R + Sbjct: 142 EVDLSKDLADWEKLKSG----EKHFISHVLAFFVASDGSMNENLVERFSQELQVTEARCF 197 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159 Q E VHS + +I + D + LFN +P + KA Sbjct: 198 YGFQIAMENVHSEMYSLLIDTYIRDSKQREYLFNAIDNLPCVKKKA 243 >gi|284167352|ref|YP_003405630.1| ribonucleotide reductase [Haloterrigena turkmenica DSM 5511] gi|284017007|gb|ADB62957.1| ribonucleotide reductase [Haloterrigena turkmenica DSM 5511] Length = 296 Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust. Identities = 52/276 (18%), Positives = 112/276 (40%), Gaps = 28/276 (10%) Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV-LAIYR 106 SA HW P + ++ D ++ + L+ E ++ L F + E V ++ LA+ Sbjct: 33 SAIEYHWDPAAIDVRAD---QEAVSELSRVEFTRLRGLLAQFGAGERAVTTDLAPLAVV- 88 Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ-Y 165 L + ++Y+ Q ++EA H+ F + E E + +P+ W+ Y Sbjct: 89 -LDGSDEQRYIATQLYDEARHTELFDRYWKRVIRPEEESRGL---IPTEPMADRWSHDDY 144 Query: 166 TQTLSSPSFTTGT---KDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-----LGRANKM 217 + S +D + + +++ EG+ T + + + L ++ Sbjct: 145 RELFDRTSNAMARLLERDTSETRARAFCHYHLTVEGILAQTAYRWVETRYSGELEAVPEL 204 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 G+ ++Y+ RDE H++FG+ + ++ K +P + + L E T+ Sbjct: 205 PGLVNGFRYLRRDEGRHVSFGVTKVRKLVDKGVDPETIVETIDEL--VPLVETTI----- 257 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + + G +G + + +RR Q+G+ P Sbjct: 258 -DQMVRDGSIGADRNGILNRIDTARDRRLEQVGVVP 292 >gi|148688624|gb|EDL20571.1| mCG140327 [Mus musculus] Length = 65 Score = 39.3 bits (90), Expect = 0.89, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%) Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +F+A+ ++G +F+ ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 1 EFVADMLMLELGFNKIFR-VENPFDFM-ENISLEGKTNFFEKRVGEYQR 47 >gi|256843983|ref|ZP_05549470.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] gi|256613888|gb|EEU19090.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] Length = 287 Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 26/188 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN---LGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +D++ W N L+DD + +I R L +++S V + V I Sbjct: 62 NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 116 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYT 166 ++ E Y AF AVH+ ++ I ++L E E ++ A+A + Y Sbjct: 117 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSEQIEEAHEWVVNNDTLQARAKAVIPY- 174 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 TG + V + G Y GF L K+ A+ + Sbjct: 175 --------YTGNDPLKSK------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRL 220 Query: 227 IMRDESLH 234 I+RD+ +H Sbjct: 221 ILRDKVIH 228 >gi|213966196|ref|ZP_03394381.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] gi|213951131|gb|EEB62528.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] Length = 334 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 64/316 (20%), Positives = 121/316 (38%), Gaps = 41/316 (12%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +DLA W+ LTD ER + + +++ A+ ++ + Sbjct: 44 NFWLPEKVPLSNDLADWRR---LTDLERELTMKVFTGLTMLDTVQASVGEISQIQDARTE 100 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 AF +AVH+ ++ + ++L P I A WA +++ Sbjct: 101 HEEAVYTNIAFMQAVHAKSYSSVFSTLS-----------NTPDIDAAYQWA------VTN 143 Query: 172 PSFTTGTKDADQEFLQDLFV----FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 +K + + D+ + + Y GF L + A+ + I Sbjct: 144 DILQARSKAVLKHYYGDVPLKRKAAATLLSSFSLYAGFYLPLHFASRGILTNTADMVRLI 203 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT--MLHEATLLEIAYAHET-MPKGF 284 +RD+++H + Q +E T+ Q K+ +L E LE+ Y+ P G Sbjct: 204 LRDKAVH-GYYSGYKFQRGVETYDTATQR-QMKAFVFELLDELYQLELRYSEALYQPLGL 261 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVIDLKKEKN--FFETRVT 341 ++++ AN+ +G F + E F P + + ++N FF + Sbjct: 262 YD----DVANFIRYNANKALMNLGYPQRFNHDETAFKPEILAALTPGSDENHDFFSGSGS 317 Query: 342 EYQQG-----AELKWD 352 Y G A+ WD Sbjct: 318 AYVIGKAEDTADEDWD 333 >gi|108801178|ref|YP_641375.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. MCS] gi|119870310|ref|YP_940262.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. KMS] gi|123069734|sp|Q1B465|RIR2H_MYCSS RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|238055309|sp|A1UKW4|RIR2H_MYCSK RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|108771597|gb|ABG10319.1| putative ribonucleoside-diphosphate reductase (beta chain) NrdB (ribonucleotide reductase small chain) [Mycobacterium sp. MCS] gi|119696399|gb|ABL93472.1| putative ribonucleoside-diphosphate reductase [Mycobacterium sp. KMS] Length = 312 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 56/260 (21%), Positives = 110/260 (42%), Gaps = 22/260 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P ++ D A W+S + L ER R F + E V +I +A R Sbjct: 32 WDPADIDFSRDRADWESLSNL---ERDWATRLCAQFIAGEEAVTQDIQPFMAAMRAEGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 YL + AFEEA H+ F+ + ++G+ + +L ++PS + + + L + Sbjct: 89 GDEMYLTQFAFEEAKHTQVFRMWLDAVGMTD-DLQCYLDDLPS------YRQMFYEELPA 141 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRD 230 T + ++ + V EGM TG+ + K++ G+ E + I D Sbjct: 142 SLEALATDPSPAAQVRASATYNHVIEGMMALTGYYAWHRICVDRKVLPGMQELVRRIGDD 201 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA-TLLEIAYA-HETMPKGFVGLN 288 E H+ +G + + W + F+ + ++ A + + ++A ++ +P GF Sbjct: 202 ERRHMAWGTFTCRRHVAADDANW-EVFENRMNELIPLALSNTDDSFALYDEIPFGFAK-- 258 Query: 289 APSCEQYMQFIANRRCHQIG 308 E++ Q+ A++ + G Sbjct: 259 ----EEFQQYAADKGMRRFG 274 >gi|311992967|ref|YP_004009834.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj61] gi|295815256|gb|ADG36182.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj61] Length = 377 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 21/227 (9%) Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ------TLSSPSF 174 F E +HS ++ +II +L + E+F+ I A+A +Y TL S Sbjct: 112 TFFETIHSRSYTHIIRNLYNNPTEIFDSVVLDDQIMARAASICKYYDELEIKWTLYSADK 171 Query: 175 TTGTKDADQEF-LQDLFVFYV----VFEGMWFYTGFAQILSLGRANK-MVGIAEQYQYIM 228 G +Q + L+ F + E + F+ F + K M G ++ +I Sbjct: 172 IRGIATEEQLYELKKAFYLCLHTINALEAIRFFVSFINTFNFFETQKVMEGNSKIMTFIA 231 Query: 229 RDESLHLNFGIDVINQIKI--ENPHLWTK---EFQQKSRTMLHEATLLEIAYAHETMPKG 283 RDE+LH +I +++ E P W K E ++++ + E + G Sbjct: 232 RDENLHHQGTRYMIKRLQSGEEGPE-WIKIAEECREEATNIFLATNEQEKEWCKYVYQSG 290 Query: 284 FV-GLNAPSCEQYMQFIANRRCHQIGLE--PLFKYTENPFPWMSEVI 327 GL+ Y+ + R +++GL+ + NPFPW+++ + Sbjct: 291 APQGLSVGLVSDYIDYATVPRMNELGLDSSSIVAPKRNPFPWLTKFL 337 >gi|329769048|ref|ZP_08260470.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325] gi|328839539|gb|EGF89115.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325] Length = 322 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 61/268 (22%), Positives = 103/268 (38%), Gaps = 23/268 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ TE + D+ W L D ER K+ L ++ + + + H + Sbjct: 25 WVDTEFKVSKDIKSWNED--LNDKERDAYKKVLAGLTGLDTQQGDKGMPLVSLHTEDMRK 82 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS---ITAKANWALQYTQTLS 170 + E +H+ ++ I TSL + + + VP+ + KAN Y L Sbjct: 83 QAVYSFMGMMEQMHAKSYSTIFTSLIPSKETDYLLDEWVPNNAELQYKANLIESYYMKLF 142 Query: 171 SPSFTTGTKDADQEFLQDLF---VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 P T DL+ V V E FY+GF L L K+ E + I Sbjct: 143 KPEVKT----------YDLYMARVASVFLESYIFYSGFFYPLYLAGQGKVTTSGEIIRKI 192 Query: 228 MRDESLHLNF-GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 + DE++H +F G D K K ++ + +L + E+ Y + G +G Sbjct: 193 LLDETIHGSFTGFDAQEIFKTLTKEEQEKAKKEMYKLLL-DLYENELKYTQDIY--GEIG 249 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFK 314 L + Y+++ ANR +G F+ Sbjct: 250 L-YDEVKDYVEYNANRALANLGYPGYFE 276 >gi|32491358|ref|NP_871612.1| ribonucleotide-diphosphate reductase subunit beta [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166565|dbj|BAC24755.1| nrdF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 324 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 58/272 (21%), Positives = 119/272 (43%), Gaps = 33/272 (12%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA--IYR 106 N W+P ++P+ +D+ WK L+ +E+ + R ++L NI+ A I Sbjct: 31 VTTNFWLPEKIPLSNDIQSWKM---LSKEEKKLTIRIFTGLTLLDTL--QNIIGAPSIMM 85 Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166 + + F EAVH+ ++ I ++L E+ + Y ++ N LQ Sbjct: 86 DAKTMHEKAVISNIGFMEAVHARSYSSIFSTL-CSTTEVDSAY-----FWSEKNKFLQNK 139 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + S + K++ ++ + +F+ E FY+GF + K+ ++ + Sbjct: 140 VNIISKIYL--EKNSLKKKIASVFL-----ESFLFYSGFYLPMFYSSRGKLTNTSDLIRL 192 Query: 227 IMRDESLH-----LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I+RDE++H F D+I+ + E ++ K+F L+E EI Y++ ++ Sbjct: 193 IIRDEAVHGYYIGYKFQKDLISLNEKEKKNI--KDFAFNLLYKLYEN---EINYSY-SLY 246 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 K + + + ++ + AN+ +G E F Sbjct: 247 KDIIPI--KNIISFLNYNANKSLMNLGYEQYF 276 >gi|310722361|ref|YP_003969185.1| hypothetical protein phiAS4_ORF0167 [Aeromonas phage phiAS4] gi|306021204|gb|ADM79739.1| hypothetical protein phiAS4_ORF0167 [Aeromonas phage phiAS4] Length = 332 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 66/305 (21%), Positives = 115/305 (37%), Gaps = 39/305 (12%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA-IYRHLSNPEC- 113 P + P+ D+ A + LT E I L F E V + A I R PE Sbjct: 37 PWDEPVVDNDAQ-DLRTKLTPGELNGITTVLKLFTIYERKVGEDYWSARIARTFGRPEIN 95 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 R L A E H+ + + L LD+ + ++E ++ + + +++S P Sbjct: 96 RMATLFAAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKESEELSRRIQFV---GKSVSDPD 152 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-----QILSLGRANKMVGIAEQYQYIM 228 DA F + EG Y+ FA Q G+ + M I + Sbjct: 153 ------DAKS------FAAFTFIEGAVLYSSFAFLKHFQAQECGK-DLMRNICRGVDLSV 199 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML---------HEATLLEIAYAHET 279 DE H G + + E + ++ + K + + HE+ ++++ +A Sbjct: 200 ADEHHHSIGGAMLFQTLCREMKEKYGEDVRAKLKNDIINMAYQVFDHESGIIDLVFA--- 256 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP-WMSEVIDLKKEKNFFET 338 + G+ A +++ N +G EP+F+ NP W I+ KK +FF Sbjct: 257 --EPIDGITADELRVFVKSRINLCLENLGYEPIFEIENNPIADWFYRTINAKKFHDFFTG 314 Query: 339 RVTEY 343 +EY Sbjct: 315 SGSEY 319 >gi|297563117|ref|YP_003682091.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847565|gb|ADH69585.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 331 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 17/113 (15%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 LPLK + W P ++ + D W+ GL + R I R FF + E Sbjct: 32 LPLKL------FAKGNARFWNPADIDLSRDAEDWE---GLGEGARARILRLCAFFVAGEE 82 Query: 95 LVANNI-----VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 V +I +A L + YL + AFEEA H F+ + +LG+ E Sbjct: 83 AVTEDIQPFLRAMAAEGRLGD---EMYLTQFAFEEARHVQAFRLWLDALGVHE 132 >gi|326932791|ref|XP_003212496.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin-1-like [Meleagris gallopavo] Length = 1998 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Query: 205 FAQILSLGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 F + S RA+ KM+ IAEQ + + L FG+D IN+I++ENP Sbjct: 1417 FGSLSSTDRADQKMIDIAEQLGLSWAELARELQFGVDDINRIRVENP 1463 >gi|169838797|ref|ZP_02871985.1| ribonucleotide-diphosphate reductase subunit beta [candidate division TM7 single-cell isolate TM7a] Length = 71 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 QL P++Y WA+ Y A N W P EV + DLA +K+ L R+++K+ L Sbjct: 19 QLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFKN---LQKTRRMLLKQLLA 70 >gi|15899238|ref|NP_343843.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus solfataricus P2] gi|227829337|ref|YP_002831116.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus L.S.2.15] gi|229578110|ref|YP_002836508.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus Y.G.57.14] gi|229583322|ref|YP_002841721.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus Y.N.15.51] gi|284996696|ref|YP_003418463.1| ribonucleotide reductase [Sulfolobus islandicus L.D.8.5] gi|13815800|gb|AAK42633.1| Ribonuleotide reductase small subunit, probable (nrdB) [Sulfolobus solfataricus P2] gi|227455784|gb|ACP34471.1| ribonucleotide reductase [Sulfolobus islandicus L.S.2.15] gi|228008824|gb|ACP44586.1| ribonucleotide reductase [Sulfolobus islandicus Y.G.57.14] gi|228014038|gb|ACP49799.1| ribonucleotide reductase [Sulfolobus islandicus Y.N.15.51] gi|284444591|gb|ADB86093.1| ribonucleotide reductase [Sulfolobus islandicus L.D.8.5] Length = 308 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 40/197 (20%), Positives = 82/197 (41%), Gaps = 16/197 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P + + D WK L D E++ I FA+ E VA ++ I + Sbjct: 39 WDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGEEAVALDLHPLIVTLVKEGRV 95 Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KANWALQYTQTL 169 + YL + +EE+ H F+ ++ N+ ++ + T N+ + + L Sbjct: 96 EEVMYLEQFVYEESKHVEAFRRFF--------DIVNVMEDLSAYTKDLSPNYKKIFYEEL 147 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIM 228 + + + ++ + + ++ EG+ G+ + K++ G+A+ I Sbjct: 148 PKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQITNTRKILPGLAKMVNLIA 207 Query: 229 RDESLHLNFGIDVINQI 245 DES H+ FGI +I ++ Sbjct: 208 TDESRHIAFGIYLITRL 224 >gi|15829010|ref|NP_326370.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma pulmonis UAB CTIP] gi|14089954|emb|CAC13712.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (RIBONUCLEOTIDE REDUCTASE) [Mycoplasma pulmonis] Length = 341 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 57/275 (20%), Positives = 107/275 (38%), Gaps = 31/275 (11%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 C N W+P ++P+ +DL W+S + + + +I R +++ A +A H Sbjct: 48 VCQNFWLPEKIPVSNDLETWRSLDPIW---QKVITRTFTGLTLLDTIQATIGDIAQLPHS 104 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF A+H+ ++ G +F+ I W + T++ Sbjct: 105 LTDHEQVIYTNFAFMVAIHARSY-----------GTIFSTLCSTEQINEAHEWVIN-TKS 152 Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L + F TG + V + G Y GF L K+ ++ Sbjct: 153 LQDRAKILIPFYTGKDPLKSK------VAAALMPGFLLYGGFYLPFYLSSRMKLPNTSDI 206 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWT-KEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I+RD+ +H N+ Q K+E L KE ++ +L++ LE Y +E + Sbjct: 207 IRLILRDKVIH-NYYSGYKYQKKVEKLSLEKQKEMKEFVFDLLYKLIDLEKKYLYELYEE 265 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +GL A ++ + A + +G + F E Sbjct: 266 --IGL-AEDAIKFSLYNAGKFLQNLGYDSPFTSEE 297 >gi|256849455|ref|ZP_05554887.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus crispatus MV-1A-US] gi|262046124|ref|ZP_06019087.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus MV-3A-US] gi|256713571|gb|EEU28560.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus crispatus MV-1A-US] gi|260573454|gb|EEX30011.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus MV-3A-US] Length = 335 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 26/188 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +D++ W N L+DD + +I R L +++S V + V I Sbjct: 45 NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 99 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYT 166 ++ E Y AF AVH+ ++ I ++L E E ++ A+A + Y Sbjct: 100 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSEQIEEAHEWVVNNDTLQARAKAVIPY- 157 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 TG + V + G Y GF L K+ A+ + Sbjct: 158 --------YTGNDPLKSK------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRL 203 Query: 227 IMRDESLH 234 I+RD+ +H Sbjct: 204 ILRDKVIH 211 >gi|161508077|ref|YP_001578044.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus helveticus DPC 4571] gi|160349066|gb|ABX27740.1| ribonucleoside-diphosphate reductase [Lactobacillus helveticus DPC 4571] Length = 340 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +D++ W N L+DD + +I R L ++++ V + V I Sbjct: 50 NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQASVGD--VAQIKNSQ 104 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 ++ E Y AF AVH+ ++ I ++L E ++ + V + N ALQ Sbjct: 105 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 157 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 P +T + V + G Y GF L K+ A+ + I+ Sbjct: 158 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 210 Query: 229 RDESLH 234 RD+ +H Sbjct: 211 RDKVIH 216 >gi|323473782|gb|ADX84388.1| ribonucleotide reductase [Sulfolobus islandicus REY15A] Length = 308 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 40/197 (20%), Positives = 82/197 (41%), Gaps = 16/197 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P + + D WK L D E++ I FA+ E VA ++ I + Sbjct: 39 WDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGEEAVALDLHPLIVTLVKEGRV 95 Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KANWALQYTQTL 169 + YL + +EE+ H F+ ++ N+ ++ + T N+ + + L Sbjct: 96 EEVMYLEQFVYEESKHVEAFRRFF--------DIVNVMEDLSAYTKDLSPNYKKIFYEEL 147 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIM 228 + + + ++ + + ++ EG+ G+ + K++ G+A+ I Sbjct: 148 PKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQITNTRKILPGLAKMVNLIA 207 Query: 229 RDESLHLNFGIDVINQI 245 DES H+ FGI +I ++ Sbjct: 208 TDESRHIAFGIYLITRL 224 >gi|293380788|ref|ZP_06626833.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 214-1] gi|290922652|gb|EFD99609.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 214-1] Length = 335 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 26/188 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +D++ W N L+DD + +I R L +++S V + V I Sbjct: 45 NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 99 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYT 166 ++ E Y AF AVH+ ++ I ++L E E ++ A+A + Y Sbjct: 100 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSEQIEEAHEWVVNNDTLQARAKAVIPY- 157 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 TG + V + G Y GF L K+ A+ + Sbjct: 158 --------YTGNDPLKSK------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRL 203 Query: 227 IMRDESLH 234 I+RD+ +H Sbjct: 204 ILRDKVIH 211 >gi|260102934|ref|ZP_05753171.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus DSM 20075] gi|111610216|gb|ABH11600.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus helveticus CNRZ32] gi|260083260|gb|EEW67380.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus DSM 20075] Length = 340 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +D++ W N L+DD + +I R L ++++ V + V I Sbjct: 50 NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQASVGD--VAQIKNSQ 104 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 ++ E Y AF AVH+ ++ I ++L E ++ + V + N ALQ Sbjct: 105 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 157 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 P +T + V + G Y GF L K+ A+ + I+ Sbjct: 158 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 210 Query: 229 RDESLH 234 RD+ +H Sbjct: 211 RDKVIH 216 >gi|323476430|gb|ADX81668.1| ribonucleotide reductase [Sulfolobus islandicus HVE10/4] Length = 308 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 40/197 (20%), Positives = 82/197 (41%), Gaps = 16/197 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P + + D WK L D E++ I FA+ E VA ++ I + Sbjct: 39 WDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGEEAVALDLHPLIVTLVKEGRV 95 Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KANWALQYTQTL 169 + YL + +EE+ H F+ ++ N+ ++ + T N+ + + L Sbjct: 96 EEVMYLEQFVYEESKHVEAFRRFF--------DIVNVMEDLSAYTKDLSPNYKKIFYEEL 147 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIM 228 + + + ++ + + ++ EG+ G+ + K++ G+A+ I Sbjct: 148 PKAMWNLSRDPSPKNQVRAVVTYNLIVEGVAAEGGYNIFRQITNTRKILPGLAKMVNLIA 207 Query: 229 RDESLHLNFGIDVINQI 245 DES H+ FGI +I ++ Sbjct: 208 TDESRHIAFGIYLITRL 224 >gi|94985875|ref|YP_605239.1| ribonucleotide-diphosphate reductase subunit beta [Deinococcus geothermalis DSM 11300] gi|94556156|gb|ABF46070.1| Ribonucleoside-diphosphate reductase [Deinococcus geothermalis DSM 11300] Length = 319 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 63/270 (23%), Positives = 102/270 (37%), Gaps = 24/270 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W E+P+ D A W++ L+ ER R + ++L + + + + Sbjct: 28 WFSEEIPIASDAADWRA---LSPAERTCYTRVSAGLNAMDTLQGEVGMPLLAAGEDDHQR 84 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 + L AF E VH+ ++ + +E E F P LQ T+ Sbjct: 85 KATLAMFAFMENVHARSYSMANKTFLSASEEREAFEWIEMQPH--------LQRKITVFR 136 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + G DA L + E FY+GF L L KM + E + I DE Sbjct: 137 RLYEEG--DALTRMLAS-----CLLETALFYSGFFYPLYLAGQGKMSHMGEVFTLICADE 189 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 +LH ++ + + P + + + E E AY E + VGL A Sbjct: 190 ALHGSYVGLLFQERFAALPQGEQAAVRARFEQLAREFYENECAYTDEVYAE--VGL-ASE 246 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 + ++++ N C +GLE LF E NP Sbjct: 247 VKTFVRYNFNICCDNLGLERLFPEEEVNPL 276 >gi|227878534|ref|ZP_03996468.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus JV-V01] gi|227861868|gb|EEJ69453.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus JV-V01] Length = 352 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 26/188 (13%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +D++ W N L+DD + +I R L +++S V + V I Sbjct: 62 NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQSSVGD--VAQIKNSQ 116 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYT 166 ++ E Y AF AVH+ ++ I ++L E E ++ A+A + Y Sbjct: 117 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSEQIEEAHEWVVNNDTLQARAKAVIPY- 174 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 TG + V + G Y GF L K+ A+ + Sbjct: 175 --------YTGNDPLKSK------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRL 220 Query: 227 IMRDESLH 234 I+RD+ +H Sbjct: 221 ILRDKVIH 228 >gi|227826697|ref|YP_002828476.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus M.14.25] gi|229583861|ref|YP_002842362.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus M.16.27] gi|227458492|gb|ACP37178.1| ribonucleotide reductase [Sulfolobus islandicus M.14.25] gi|228018910|gb|ACP54317.1| ribonucleotide reductase [Sulfolobus islandicus M.16.27] Length = 308 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 40/197 (20%), Positives = 82/197 (41%), Gaps = 16/197 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P + + D WK L D E++ I FA+ E VA ++ I + Sbjct: 39 WDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGEEAVALDLHPLIVTLVKEGRV 95 Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KANWALQYTQTL 169 + YL + +EE+ H F+ ++ N+ ++ + T N+ + + L Sbjct: 96 EEVMYLEQFVYEESKHVEAFRRFFDAV--------NVMEDLSTYTKDLSPNYKKIFYEEL 147 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIM 228 + + + ++ + + ++ EG+ G+ + K++ G+A+ I Sbjct: 148 PKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQITNTRKILPGLAKMVNLIA 207 Query: 229 RDESLHLNFGIDVINQI 245 DES H+ FGI +I ++ Sbjct: 208 TDESRHIAFGIYLITRL 224 >gi|251781888|ref|YP_002996190.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390517|dbj|BAH80976.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126699|gb|ADX23996.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 337 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 26/191 (13%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +DL W+S L +D + +I R +++ A +A +H Sbjct: 44 VTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF A+H+ ++ I ++L E I W + TQ+ Sbjct: 101 QTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148 Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L + + TG + V + G Y GF L KM ++ Sbjct: 149 LQERARVLIPYYTGNDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMSNTSDI 202 Query: 224 YQYIMRDESLH 234 + I+RD+ +H Sbjct: 203 IRLILRDKVIH 213 >gi|66957902|gb|AAY59065.1| ribonucleotide reductase small subunit [Tortoise herpesvirus] Length = 215 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 22/199 (11%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 A N W E DD+ + D E L R + F S+ N + + + Sbjct: 20 AIKNRWAEDEFMYTDDIKDFSR----LDPEALDFYRFIFTFLSAADDKVNINLDQLKQLF 75 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQ 164 + Y Q E VHS T+ + +L ++ + Y E P+I K +W Sbjct: 76 PQKDVHHYYATQEDIECVHSRTYAGVQLALFNNDDDARRRYIEANVSHPTIETKFDW--- 132 Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 TK + E + + ++ ++ EG++F FA I L + Sbjct: 133 -----------LNTKIMENESVPEKYLLMILVEGIFFVASFASIAYLRNHGGFNSVCRSN 181 Query: 225 QYIMRDESLHLNFGIDVIN 243 I RDE++H + N Sbjct: 182 DLISRDEAIHTQASCCIFN 200 >gi|328464295|gb|EGF35725.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus helveticus MTCC 5463] Length = 335 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 22/186 (11%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +D++ W N L+DD + +I R L ++++ V + V I Sbjct: 45 NFWLPEKIPVSNDISSW---NQLSDDWQQLITRTFTGLTLLDTTQASVGD--VAQIKNSQ 99 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 ++ E Y AF AVH+ ++ I ++L E ++ + V + N ALQ Sbjct: 100 TDIEQAIY-ANFAFMVAVHARSYGTIFSTLCTSE-QIEEAHEWVVN-----NDALQARAK 152 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 P +T + V + G Y GF L K+ A+ + I+ Sbjct: 153 AVIPYYTGNDPLKSK-------VAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLIL 205 Query: 229 RDESLH 234 RD+ +H Sbjct: 206 RDKVIH 211 >gi|222102712|ref|YP_002539751.1| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium vitis S4] gi|221739313|gb|ACM40046.1| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium vitis S4] Length = 329 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 57/266 (21%), Positives = 114/266 (42%), Gaps = 27/266 (10%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +VP+ +D+ W + L +E+ + R +++ + + P Sbjct: 39 NFWLPEKVPLSNDIPSWAA---LKPEEQQLTIRVFTGLTLLDTIQTSIGAPTLMEDSITP 95 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 +F EAVH+ ++ I ++L ++ + YR ++ N LQ L Sbjct: 96 HEEAVYSNISFMEAVHARSYSSIFSTL-CSTSDVDDAYR-----WSEENEFLQKKSALIL 149 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + D + + +F+ E FY+GF + ++ A+ + I+RDE Sbjct: 150 EHYRN--PDPLKRKIASVFL-----ESFLFYSGFYLPMFWSSRARLTNTADMIRLIIRDE 202 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI----AYAHETMPKGFVGL 287 ++H + I Q +E ++E +Q+++ + LLE+ A E + G VGL Sbjct: 203 AVH-GYYIGYKFQRGLEP---LSEEQRQETKDFAFD-LLLELYDNEAKYTEALYDG-VGL 256 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF 313 ++++ + AN+ +G E LF Sbjct: 257 TE-DVKKFLHYNANKALMNLGYEALF 281 >gi|284174067|ref|ZP_06388036.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus solfataricus 98/2] gi|261600997|gb|ACX90600.1| ribonucleotide reductase [Sulfolobus solfataricus 98/2] Length = 308 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 40/197 (20%), Positives = 83/197 (42%), Gaps = 16/197 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P + + D WK N L E++ I FA+ E VA ++ I + + Sbjct: 39 WDPANIDLSKDAEDWKKLNDL---EKMFIINVGSKFAAGEEAVALDLHPLIVTLVKEGKV 95 Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA--KANWALQYTQTL 169 + YL + +EE+ H F+ ++ N+ ++ + T N+ + + L Sbjct: 96 EEVMYLEQFVYEESKHVEAFRRFFDAV--------NVIEDLSAYTKDLSPNYRKIFYEEL 147 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIM 228 + + + ++ + + +V EG+ G+ + K++ G+A+ I Sbjct: 148 PKAMWNLSKDPSPENQVKAVVTYNLVVEGIAAEGGYNIFRRITNTRKILPGLAKMINLIA 207 Query: 229 RDESLHLNFGIDVINQI 245 DES H+ FG+ +I ++ Sbjct: 208 TDESRHIAFGVYLIARL 224 >gi|294669616|ref|ZP_06734683.1| hypothetical protein NEIELOOT_01517 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308529|gb|EFE49772.1| hypothetical protein NEIELOOT_01517 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 81 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMS 324 +GLN QY+++I N R +GL F+ T+NP PW++ Sbjct: 1 MIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWIN 42 >gi|328768069|gb|EGF78116.1| hypothetical protein BATDEDRAFT_37293 [Batrachochytrium dendrobatidis JAM81] Length = 356 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 67/327 (20%), Positives = 128/327 (39%), Gaps = 38/327 (11%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG---LTDDERLMIKRNLGFFA 90 L P+++ W+ Y + N W EV M DDL NG L+ E+ ++ + Sbjct: 29 LFPIQFNEIWQAYKNLEANFWSAEEVEMSDDL------NGFEQLSRKEQSLMLQITSILC 82 Query: 91 SSESLVANNIVLAIYR-HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELF 146 L N +L+ Y + PE R + Q ++ +HS I+ E +L Sbjct: 83 MGCGL-NNEAILSRYSDEIQIPEARCFFGFQLMQKNIHSELSMVILDMFSESEKQRDDLL 141 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA-----DQEFLQDLFVFYVVFEGMWF 201 ++ +++PS T WA + P T A Q L+D+ F E Sbjct: 142 DVIQQLPSRTMWTEWARTHMTRSEEPFALRVTSLAIFQAIHQVSLRDIIAFIAGPE---- 197 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF----GIDVINQIKIENPHLWTKEF 257 T + S ++ + G+ I D+ +L+F +++ + + HL + Sbjct: 198 -TSTLPVTS-SESHLLHGVVHAMHKIHHDQLQYLSFLALIQSNLVRRADTQLVHLMARA- 254 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP--SCEQYMQFIANRRCHQIGLEPLFKY 315 + E TL++ + T G P + + ++F+ + +G P + Sbjct: 255 -----AVAAEHTLIDDVFNLSTGNILLCGKIVPKEALKGRIEFLTDMCLTTMGY-PAMYH 308 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTE 342 ++P PW+S + + +K +T T+ Sbjct: 309 VQDPIPWISVLHVREAKKGSADTHTTQ 335 >gi|328958551|ref|YP_004375937.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] gi|328674875|gb|AEB30921.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] Length = 328 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 78/195 (40%), Gaps = 23/195 (11%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK S W+ T +P+ ++ + W+ L ++ER + + L AS + + Sbjct: 31 TWEKLTSLF---WLDTRIPVTNEKSQWED---LPENERKVFLKTLAGLASVATFQSERGF 84 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT--AKA 159 + I + F E+VH+ + I+ FN +EV I A Sbjct: 85 MVIEEGEHTQQEAAIYNNIQFIESVHAKAYNTILIG--------FNEPKEVDDILIWADN 136 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 N L+Y + TGT LQ V ++ EG+ Y+G L + Sbjct: 137 NIELKYRLDRILEVYKTGTT------LQKR-VANLILEGVLTYSGLFTPLLYWTQKRFTS 189 Query: 220 IAEQYQYIMRDESLH 234 +AE + ++ +ESLH Sbjct: 190 VAEIIKLVLTNESLH 204 >gi|260578497|ref|ZP_05846410.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium jeikeium ATCC 43734] gi|258603378|gb|EEW16642.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium jeikeium ATCC 43734] Length = 338 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 39/202 (19%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W++ S N W+P +VP+ +DL W N LTD ER + + L + V Sbjct: 38 WQRLTS---NFWLPEKVPLSNDLPTW---NALTDAERELTTKVF------TGLTLLDTVQ 85 Query: 103 AIYRHLSN-PECR-----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 A +S P+ R AF +AVH+ ++ + +++ E I Sbjct: 86 ATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSE-----------EIN 134 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLG 212 A WA + +P+ Q + D V + + Y GF L Sbjct: 135 AAYTWA------IGNPALQRRATAVMQHYYGDDPLKRKVAATLLSSLLLYAGFYLPLWFS 188 Query: 213 RANKMVGIAEQYQYIMRDESLH 234 ++ A+ + I+RD+++H Sbjct: 189 CRGTLMNTADMIRLILRDKAVH 210 >gi|229172094|ref|ZP_04299659.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus MM3] gi|228611437|gb|EEK68694.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus MM3] Length = 133 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 5/117 (4%) Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 ++DES+H F + Q+ +E +E Q++++ +L E +E+AY E +GL Sbjct: 3 VKDESIHGVFVGILAQQLFVELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL 60 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 61 -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKN-HDFFSVKGNGY 115 >gi|68535290|ref|YP_249995.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium jeikeium K411] gi|68262889|emb|CAI36377.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium jeikeium K411] Length = 338 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 39/202 (19%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 W++ S N W+P +VP+ +DL W N LTD ER + + L + V Sbjct: 38 WQRLTS---NFWLPEKVPLSNDLPTW---NALTDAERELTTKVF------TGLTLLDTVQ 85 Query: 103 AIYRHLSN-PECR-----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 A +S P+ R AF +AVH+ ++ + +++ E I Sbjct: 86 ATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSE-----------EIN 134 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLG 212 A WA + +P+ Q + D V + + Y GF L Sbjct: 135 AAYTWA------IGNPALQRRATAVMQHYYGDDPLKRKVAATLLSSLLLYAGFYLPLWFS 188 Query: 213 RANKMVGIAEQYQYIMRDESLH 234 ++ A+ + I+RD+++H Sbjct: 189 CRGTLMNTADMIRLILRDKAVH 210 >gi|331703804|ref|YP_004400491.1| ribonucleoside diphosphate reductase 2 betachain [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256383837|gb|ACU78407.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256384668|gb|ACU79237.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455270|gb|ADH21505.1| ribonucleoside-diphosphate reductase, beta subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328802359|emb|CBW54513.1| Ribonucleoside diphosphate reductase 2 betachain [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 339 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 28/235 (11%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +DL+ W+S L+ + + ++ R +++ A +A H Sbjct: 47 TQNFWLPEKIPVSNDLSSWRS---LSSEWQQLVTRTFTGLTLLDTVQATVGDVAQIEHSL 103 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + AF VH+ ++ I ++L E I W ++ T+TL Sbjct: 104 TDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSE-----------QIEEAHEWVVK-TETL 151 Query: 170 SSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 + + TGT + V + G Y GF L K+ ++ Sbjct: 152 QKRAKALIPYYTGTDPLKSK------VAAALMPGFLLYGGFYLPFYLSARGKLPNTSDII 205 Query: 225 QYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 + I+RD+ +H N+ Q K+ P E ++ +L+E LE AY E Sbjct: 206 RLILRDKVIH-NYYSGYKYQKKVAKLPVEKQAEMKEFVFKLLYELIDLETAYLKE 259 >gi|42561374|ref|NP_975825.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492872|emb|CAE77467.1| ribonucleoside-diphosphate reductase 2 beta chain [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321363|gb|ADK70006.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 339 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 28/235 (11%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +DL+ W+S L+ + + ++ R +++ A +A H Sbjct: 47 TQNFWLPEKIPVSNDLSSWRS---LSSEWQQLVTRTFTGLTLLDTVQATVGDVAQIEHSL 103 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + AF VH+ ++ I ++L E I W ++ T+TL Sbjct: 104 TDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSE-----------QIEEAHEWVVK-TETL 151 Query: 170 SSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 + + TGT + V + G Y GF L K+ ++ Sbjct: 152 QKRAKALIPYYTGTDPLKSK------VAAALMPGFLLYGGFYLPFYLSARGKLPNTSDII 205 Query: 225 QYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 + I+RD+ +H N+ Q K+ P E ++ +L+E LE AY E Sbjct: 206 RLILRDKVIH-NYYSGYKYQKKVAKLPVEKQTEMKEFVFKLLYELIDLETAYLKE 259 >gi|313892092|ref|ZP_07825688.1| ribonucleoside-diphosphate reductase, beta subunit [Dialister microaerophilus UPII 345-E] gi|329121529|ref|ZP_08250153.1| ribonucleotide-diphosphate reductase subunit beta [Dialister micraerophilus DSM 19965] gi|313119484|gb|EFR42680.1| ribonucleoside-diphosphate reductase, beta subunit [Dialister microaerophilus UPII 345-E] gi|327469444|gb|EGF14914.1| ribonucleotide-diphosphate reductase subunit beta [Dialister micraerophilus DSM 19965] Length = 338 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 16/183 (8%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+P +PM +D+ W N L+DD + ++ R +++ A+ +A ++ Sbjct: 48 NFWLPENIPMSNDIPSW---NTLSDDWKQLVTRTFTGLTLLDTVQASIGDIAQIKNSVTD 104 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 + AF VH+ ++ I ++L E ++ + V + N ALQ L Sbjct: 105 HEQVIYANFAFMVGVHARSYGTIFSTLCSSE-QIEEAHEWVVN-----NDALQARAKLLI 158 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P +T D V + G Y GF L K+ ++ + I+RD+ Sbjct: 159 PYYT-----GDDPLRSK--VAAALMPGFLLYGGFYLPFYLASRAKLPNTSDMIRLILRDK 211 Query: 232 SLH 234 +H Sbjct: 212 VIH 214 >gi|238618784|ref|YP_002913609.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus M.16.4] gi|238379853|gb|ACR40941.1| ribonucleotide reductase [Sulfolobus islandicus M.16.4] Length = 308 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 38/208 (18%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P + + D WK L D E++ I FA+ E VA ++ I + Sbjct: 39 WDPANIDLSKDAEDWKK---LNDLEKMFIINVGSKFAAGEEAVALDLHPLIVTLVKEGRV 95 Query: 114 RQ--YLLRQAFEEAVHSHTFQYIITSLGLDEG-------------ELFNMYREVPSITAK 158 + YL + +EE+ H F+ ++ + E ++F Y E+P K Sbjct: 96 EEVMYLEQFVYEESKHVEAFRRFFDAVNVMEDLSAYTKDLSPNYKKIF--YEELP----K 149 Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 A W L SP G + + ++ EG+ G+ + K++ Sbjct: 150 AMWNLSRD---PSPENQVGA----------VVTYNLIVEGVAAEGGYNIFRQITNTRKIL 196 Query: 219 -GIAEQYQYIMRDESLHLNFGIDVINQI 245 G+A+ I DES H+ FGI +I ++ Sbjct: 197 PGLAKMVNLIATDESRHIAFGIYLITRL 224 >gi|257057366|ref|YP_003135198.1| ribonucleotide-diphosphate reductase subunit beta [Saccharomonospora viridis DSM 43017] gi|256587238|gb|ACU98371.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis DSM 43017] Length = 328 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 52/256 (20%), Positives = 103/256 (40%), Gaps = 27/256 (10%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-----VLAIYRHL 108 W P ++ D W+ LTD +RL FA+ E V +I +A L Sbjct: 40 WDPADIDFSVDARDWEK---LTDRQRLSATYLCAQFAAGEEAVTEDIQPFLRAMAAEGRL 96 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + YL + FEEA H+ F+ + ++GL + +++ P + ++ + + Sbjct: 97 GD---EMYLAQFCFEEAKHTEAFRRWMDAVGLTD----DLH---PFVAENPHYRKLFYEE 146 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA--QILSLGRANKMVGIAEQYQY 226 L + + ++ + V EG TG+ Q L + R + G+ E + Sbjct: 147 LPESLGVLAEDPSPRNQVRASVTYNHVIEGSLALTGYYAWQKLCVSR-GILPGMRELVRR 205 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 + DE H+ +G + + LW Q+ + H ++E + + + G Sbjct: 206 VSDDERRHMAWGTFTCRRHVAADDSLWEVVQQRMDELLPHALGMIE--WVNRQFDESSDG 263 Query: 287 LNAPSCEQYMQFIANR 302 NA +++++ A+R Sbjct: 264 DNA----EFVRYAADR 275 >gi|317122349|ref|YP_004102352.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885] gi|315592329|gb|ADU51625.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885] Length = 359 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 19/206 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI---VLAIYRHLSN 110 W P + ++ D WK L D ++ + R + FA+ E V ++ ++ I R Sbjct: 51 WDPRAIDLRQDKEDWKL---LNDAQKDALLRLVSLFAAGEESVTLDLLPLIMVIARE-GR 106 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL--QYTQT 168 E +L +EEA H+ + + + GE + Y PS L + Sbjct: 107 LEEEMFLTTFLWEEAKHTEFMRRFLDEVAGVSGEDLHHY-HTPSYKKIFYEELPQAMNRL 165 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYI 227 L PS + + + ++ EG+ TG+ A +L R M G + + Sbjct: 166 LDDPSPAAQAEAS--------VTYNLIVEGVLAETGYYAFYRTLQRQGVMPGFVQGIRNF 217 Query: 228 MRDESLHLNFGIDVINQIKIENPHLW 253 RDES HL +G+ ++ ++ + +W Sbjct: 218 QRDESRHLAYGVFLLQRLVAADDSIW 243 >gi|169631086|ref|YP_001704735.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium abscessus ATCC 19977] gi|238055304|sp|B1MHK0|RIR2H_MYCA9 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|169243053|emb|CAM64081.1| Ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium abscessus] Length = 313 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 65/270 (24%), Positives = 106/270 (39%), Gaps = 41/270 (15%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P + D A W+S LT+ ER R F + E V +I ++ R Sbjct: 32 WDPAGIDFSRDRADWES---LTERERDYATRLCAQFIAGEESVTQDIQPFMSAMRAEGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNM--YREVPSITAKANWALQYT 166 YL + AFEEA H+ F+ + ++G+ E G L ++ YRE+ + AL Sbjct: 89 GDEMYLTQFAFEEAKHTQVFRLWLDAVGVSEDLHGYLDDLPAYREI--FFDRLPDALGML 146 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA--QILSLGRANKMVGIAEQY 224 SP+ + V EGM TG+ + + R + G+ E Sbjct: 147 AADPSPAAQVRAS----------VTYNHVVEGMLALTGYFAWHKICVDR-GILPGMQELV 195 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE-IAYAHETMPKG 283 I DE H+ +G + + W+ + EA + E I A +G Sbjct: 196 HRIGDDERRHMAWGTFTCRRHVAADDANWS----------VFEARMNELIPIALRLTEEG 245 Query: 284 F--VGLNAP---SCEQYMQFIANRRCHQIG 308 F G + P S +++MQ+ A++ + G Sbjct: 246 FELYGDDTPFGLSLDEFMQYSADKGMRRFG 275 >gi|227542806|ref|ZP_03972855.1| ribonucleoside-diphosphate reductase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181432|gb|EEI62404.1| ribonucleoside-diphosphate reductase [Corynebacterium glucuronolyticum ATCC 51866] Length = 335 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 16/185 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W + N + + L + + V V I ++ Sbjct: 43 TGNFWLPEKIPVSNDIPSWNTLNETEQIATMRVFTGLTLLDTIQGTVG--AVSLIPDAVT 100 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + E Y AF E+VH+ ++ I +L P I W+ + Sbjct: 101 HHEEAVY-TNIAFMESVHAKSYSNIFMTLA-----------STPMINDAFRWSEENVNLQ 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + + + E FY+GF + K+ A+ + I+R Sbjct: 149 RKGEIILRDYDGKNPYKRK--IASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIR 206 Query: 230 DESLH 234 DE++H Sbjct: 207 DEAVH 211 >gi|227488208|ref|ZP_03918524.1| ribonucleoside-diphosphate reductase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091778|gb|EEI27090.1| ribonucleoside-diphosphate reductase [Corynebacterium glucuronolyticum ATCC 51867] Length = 335 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 16/185 (8%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W+P ++P+ +D+ W + N + + L + + V V I ++ Sbjct: 43 TGNFWLPEKIPVSNDIPSWNTLNETEQIATMRVFTGLTLLDTIQGTVG--AVSLIPDAVT 100 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 + E Y AF E+VH+ ++ I +L P I W+ + Sbjct: 101 HHEEAVY-TNIAFMESVHAKSYSNIFMTLA-----------STPMINDAFRWSEENVNLQ 148 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D + + + + E FY+GF + K+ A+ + I+R Sbjct: 149 RKGEIILRDYDGKNPYKRK--IASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIR 206 Query: 230 DESLH 234 DE++H Sbjct: 207 DEAVH 211 >gi|228957728|ref|ZP_04119472.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801971|gb|EEM48844.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus thuringiensis serovar pakistani str. T13001] Length = 133 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 ++DES+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 3 VKDESIHGVFVGILAQQIFAELSTEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL 60 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 61 -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKN-HDFFSVKGNGY 115 >gi|213420352|ref|ZP_03353418.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 88 Score = 37.4 bits (85), Expect = 3.8, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 24/40 (60%) Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 10 IGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 49 >gi|71903000|ref|YP_279803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS6180] gi|71802095|gb|AAX71448.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS6180] Length = 337 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +DL W+S L +D + +I R +++ A +A +H Sbjct: 44 VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF +H+ ++ I ++L E I W + TQ+ Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148 Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L S + TG + V + G Y GF L KM ++ Sbjct: 149 LQDRSRVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202 Query: 224 YQYIMRDESLH 234 + I+RD+ +H Sbjct: 203 IRLILRDKVIH 213 >gi|19745563|ref|NP_606699.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS8232] gi|19747686|gb|AAL97198.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes MGAS8232] Length = 337 Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust. Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +DL W+S L +D + +I R +++ A +A +H Sbjct: 44 VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF +H+ ++ I ++L E I W + TQ+ Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148 Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L S + TG + V + G Y GF L KM ++ Sbjct: 149 LQDRSRVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202 Query: 224 YQYIMRDESLH 234 + I+RD+ +H Sbjct: 203 IRLILRDKVIH 213 >gi|213855386|ref|ZP_03383626.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 80 Score = 37.0 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 24/40 (60%) Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 2 IGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 41 >gi|196040733|ref|ZP_03108032.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus NVH0597-99] gi|206977638|ref|ZP_03238531.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus H3081.97] gi|217958931|ref|YP_002337479.1| ribonucleoside-diphosphate reductase, subunit beta [Bacillus cereus AH187] gi|222095088|ref|YP_002529148.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus Q1] gi|229138142|ref|ZP_04266740.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus BDRD-ST26] gi|229195652|ref|ZP_04322418.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus m1293] gi|196028523|gb|EDX67131.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus NVH0597-99] gi|206744211|gb|EDZ55625.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus H3081.97] gi|217064629|gb|ACJ78879.1| ribonucleoside-diphosphate reductase, subunit beta [Bacillus cereus AH187] gi|221239146|gb|ACM11856.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus Q1] gi|228587901|gb|EEK45953.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus m1293] gi|228645487|gb|EEL01721.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus BDRD-ST26] Length = 133 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 ++DES+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 3 VKDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL 60 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 61 -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKN-HDFFSVKGNGY 115 >gi|213581345|ref|ZP_03363171.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 90 Score = 37.0 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 24/40 (60%) Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +GLN QY+++I N R +GL+ F+ NP PW++ Sbjct: 12 IGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWIN 51 >gi|206968346|ref|ZP_03229302.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH1134] gi|228951834|ref|ZP_04113932.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069005|ref|ZP_04202298.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus F65185] gi|206737266|gb|EDZ54413.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH1134] gi|228714117|gb|EEL65999.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus F65185] gi|228807757|gb|EEM54278.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 133 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 ++DES+H F + QI E +E Q++++ +L E +E+AY E +GL Sbjct: 3 VKDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIYTS--IGL 60 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEY 343 +++++ AN+ +GLEP F+ E NP D K +FF + Y Sbjct: 61 -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNGLRTDTKN-HDFFSVKGNGY 115 >gi|319440691|ref|ZP_07989847.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium variabile DSM 44702] Length = 335 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 28/191 (14%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 +N W+P ++P+ +DL W++ L+DDER + R L + V A +S Sbjct: 43 TSNFWLPEKMPLSNDLPDWRA---LSDDERTLTARVF------TGLTLLDTVQATVGEIS 93 Query: 110 N-PECR-----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 P+ R AF +AVH+ ++ + +++ E+ + Y WA+ Sbjct: 94 QIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTM-CSSAEIEDAY----------TWAI 142 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + + D + V + + Y GF L M+ A+ Sbjct: 143 DNRRLQPRATAVMAHYAGDDPLKRK--VASTLLSSLLLYAGFYLPLWYSSRGVMMNTADM 200 Query: 224 YQYIMRDESLH 234 + I+RD+++H Sbjct: 201 IRLILRDKAVH 211 >gi|281181724|dbj|BAI58041.1| putative ribonucleoside-diphosphate reductase [Edwardsiella tarda] Length = 169 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 16/150 (10%) Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I +A Sbjct: 17 VALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVTDPSLVFDDIVSNEEILKRARD 76 Query: 162 ALQYTQTLSSPS-----FTTGTKDAD--------QEFLQDLFVFYV---VFEGMWFYTGF 205 Y L + GT + +E + L++ + E + FY F Sbjct: 77 ISAYYDDLIETTGYYHLLGEGTHQINGKPVTVSLRELKKKLYLCLMSVNALEAIRFYVSF 136 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHL 235 A + M G A+ + I RDE+LHL Sbjct: 137 ACSFAFAERELMEGNAKIIRLIARDEALHL 166 >gi|134097201|ref|YP_001102862.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|291005341|ref|ZP_06563314.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|238055312|sp|A4F7B2|RIR2H_SACEN RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|133909824|emb|CAL99936.1| ribonucleoside-diphosphate reductase beta chain [Saccharopolyspora erythraea NRRL 2338] Length = 317 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 13/188 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111 W P ++ D W+ GLT++ER + F + E V ++ +A Sbjct: 37 WDPADIDFTRDAEDWQ---GLTEEERRSVAMLCSQFIAGEEAVTQDLQPFMAAMAAEGRF 93 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 YL + FEEA H+ F+ + ++GL G+L + E P +A + + ++L+ Sbjct: 94 GDEMYLTQFCFEEAKHTQVFRLWMDAVGL-TGDLHSHVAENPGY--RAIFYEELPRSLN- 149 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV-GIAEQYQYIMRD 230 + A+Q ++ + V EG TG+ + R+ ++ G+ E + I D Sbjct: 150 -ALHDDPSPANQ--VRASVTYNHVVEGTLALTGYFAWQKICRSRGILPGMQEVVRRIGDD 206 Query: 231 ESLHLNFG 238 E H+ +G Sbjct: 207 ERRHMAWG 214 >gi|25010526|ref|NP_734921.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae NEM316] gi|23094879|emb|CAD46097.1| unknown [Streptococcus agalactiae NEM316] Length = 336 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 26/191 (13%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +DL W++ L D + +I R +S+ A +A +H Sbjct: 43 VTQNFWLPEKIPVSNDLNSWRT---LDADWQQLITRTFTGLTLLDSVQATVGDIAQIKHS 99 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF A+H+ ++ I ++L + I W + T++ Sbjct: 100 QTDHEQVIYANFAFMVAIHARSYGTIFSTLCTSQ-----------QIEEAHEWVVD-TES 147 Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L + S F TG + V + G Y GF L K+ ++ Sbjct: 148 LQARSRILIPFYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKLPNTSDI 201 Query: 224 YQYIMRDESLH 234 + I+RD+ +H Sbjct: 202 IRLILRDKVIH 212 >gi|194246584|ref|YP_002004223.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Phytoplasma mali] gi|193806941|emb|CAP18373.1| Ribonucleoside-diphosphate reductase, beta chain [Candidatus Phytoplasma mali] Length = 348 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 57/282 (20%), Positives = 110/282 (39%), Gaps = 26/282 (9%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P ++ +Q DL WK L+ E+ + +NL ++ ++ + I E Sbjct: 33 WRPEDISLQGDLQTWKD---LSKFEKNVYSKNLLILTFLDTYQGDSGMFIISSSFKKEEH 89 Query: 114 RQYL---LRQAFEEAVHSHTFQYIITSLGLDEGELFNMY------REVPSITAKANWALQ 164 ++ A E AVH+ ++ I +L L+ E+ +++ + + +I K + Sbjct: 90 QKKATLNFMGAMENAVHAKSYSNIFMTL-LNSKEIDDLFVWGGNQKYLQNIIGKI---ID 145 Query: 165 YTQTLSSPSFTTGTKDAD------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 + L F D + +++ V V E FY+GF L K++ Sbjct: 146 VYEDLEKKIFQRKYNDENITDLIFKKYQWKAMVTSVFLETWLFYSGFYYPLFFYSQGKLM 205 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 E I+RDES+H + + I L E + +L +IA Sbjct: 206 QSGEIINLIIRDESVHGVYIARLALNIYNSFDKLIKDELSKWMYDLLKYFYQEQIALVKS 265 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319 + ++ +++++ AN+ +G P F+ E NP Sbjct: 266 VYNEHYL---INDVNKFVRYNANKALMNLGFNPYFEKEEVNP 304 >gi|22536601|ref|NP_687452.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae 2603V/R] gi|76788476|ref|YP_329136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae A909] gi|76798641|ref|ZP_00780867.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 18RS21] gi|77406064|ref|ZP_00783140.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae H36B] gi|77407720|ref|ZP_00784475.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae COH1] gi|77411308|ref|ZP_00787657.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae CJB111] gi|77414130|ref|ZP_00790296.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 515] gi|22533438|gb|AAM99324.1|AE014211_1 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus agalactiae 2603V/R] gi|76563533|gb|ABA46117.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus agalactiae A909] gi|76586006|gb|EAO62538.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 18RS21] gi|77159800|gb|EAO70945.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 515] gi|77162644|gb|EAO73606.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae CJB111] gi|77173719|gb|EAO76833.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae COH1] gi|77175344|gb|EAO78137.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae H36B] gi|319744439|gb|EFV96796.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae ATCC 13813] Length = 336 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 26/191 (13%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P ++P+ +DL W++ L D + +I R +S+ A +A +H Sbjct: 43 VTQNFWLPEKIPVSNDLNSWRT---LDADWQQLITRTFTGLTLLDSVQATVGDIAQIKHS 99 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF A+H+ ++ I ++L + I W + T++ Sbjct: 100 QTDHEQVIYANFAFMVAIHARSYGTIFSTLCTSQ-----------QIEEAHEWVVD-TES 147 Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L + S F TG + V + G Y GF L K+ ++ Sbjct: 148 LQARSRILIPFYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKLPNTSDI 201 Query: 224 YQYIMRDESLH 234 + I+RD+ +H Sbjct: 202 IRLILRDKVIH 212 >gi|320450283|ref|YP_004202379.1| ribonucleoside-diphosphate reductase subunit beta [Thermus scotoductus SA-01] gi|320150452|gb|ADW21830.1| ribonucleoside-diphosphate reductase, subunit beta [Thermus scotoductus SA-01] Length = 323 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 27/173 (15%) Query: 189 LFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L +F E ++ F +++L R + GI+ + ++E+LH FG++++ ++ Sbjct: 151 LLLFSAFTEHASLFSQFYVLMALNKRLGRFKGISNAIEATSKEENLHGLFGVELLRILRE 210 Query: 248 ENPHLWTKEFQQKSRTMLH-----EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 E P L+ F +++ + E LLE +A +G A E+ ++F+ R Sbjct: 211 ERPDLFGPSFTEEALDRVEAFFRTEEALLEWIFA-----RG--DTEAVRGEEVLEFLKWR 263 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVI------DLK----KEKNFFETRVTEYQQ 345 + L L PFP E + DL+ KE +FF R Y + Sbjct: 264 YNQVLALHGL----PAPFPVRKECLRDTEWFDLELLADKEVDFFNKRSVAYAR 312 >gi|328480216|gb|EGF49142.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus MTCC 5462] Length = 115 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 WEK W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + Sbjct: 21 TWEKL---TEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGM 74 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 ++ +++ + L F E+VH+ ++ I ++L Sbjct: 75 ASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTL 111 >gi|213420353|ref|ZP_03353419.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 150 Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust. Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 18/143 (12%) Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFN-----------------MYREVPSITAKANWAL 163 AF E +HS ++ +II ++ D +F+ Y E+ +T+ + Sbjct: 4 AFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLG 63 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + T T++ + ++ ++ L E + FY FA + M G A+ Sbjct: 64 EGTHTVNGKTVVVNLRELKKKLYLCLMSVNA-LEAIRFYVSFACSFAFAERELMEGNAKI 122 Query: 224 YQYIMRDESLHLNFGIDVINQIK 246 + I RDE+LHL ++N ++ Sbjct: 123 IRLIARDEALHLTGTQHMLNLLR 145 >gi|157310978|ref|YP_001468974.1| putative ribonucleotide reductase [Corynebacterium phage P1201] gi|95832126|gb|ABF57526.1| putative ribonucleotide reductase [Corynebacterium phage P1201] Length = 237 Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 13/125 (10%) Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH---LNFGIDVI--NQIKIE 248 V+ E FYTGF L K+ A+ + IMRDE +H L + + + E Sbjct: 74 VLLESFLFYTGFYLPLHFASQGKLTNTADLIRLIMRDEGVHGYYLGYKFQKVMEGALPYE 133 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 + + R ++E L+E Y +GL+A + ++++ N+ +G Sbjct: 134 RDAVKERVTNLACRLFVNEIPLIEEIYEP-------LGLSA-QVQTFLRYNLNKAMQNLG 185 Query: 309 LEPLF 313 LE +F Sbjct: 186 LENVF 190 >gi|6782388|emb|CAB70099.1| ribonucleotide reductase R2 subunit [Plasmodium yoelii] Length = 111 Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust. Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 17/124 (13%) Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSI 155 N+ R + E +++ Q E +HS T+ +I + DE E N++ +P+I Sbjct: 2 NLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAI 61 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 KA WA ++ +S + V EG+ + F Q + N Sbjct: 62 KNKALWAAKWINDTNS--------------FAERIVANACVEGILYSGSFLQFFGFKKQN 107 Query: 216 KMVG 219 K+ G Sbjct: 108 KLHG 111 >gi|56807592|ref|ZP_00365501.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus pyogenes M49 591] Length = 311 Score = 36.2 bits (82), Expect = 7.7, Method: Compositional matrix adjust. Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +DL W+S L +D + +I R +++ A +A +H Sbjct: 18 VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 74 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF +H+ ++ I ++L E I W + TQ+ Sbjct: 75 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 122 Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L + + TG + V + G Y GF L KM ++ Sbjct: 123 LQDRARVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 176 Query: 224 YQYIMRDESLH 234 + I+RD+ +H Sbjct: 177 IRLILRDKVIH 187 >gi|162448128|ref|YP_001621260.1| ribonucleoside-diphosphate reductase subunit beta [Acholeplasma laidlawii PG-8A] gi|161986235|gb|ABX81884.1| ribonucleoside-diphosphate reductase, beta chain [Acholeplasma laidlawii PG-8A] Length = 369 Score = 36.2 bits (82), Expect = 8.1, Method: Compositional matrix adjust. Identities = 57/276 (20%), Positives = 118/276 (42%), Gaps = 23/276 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-E 112 W P +V +Q DL +W L ++ + +NL ++ + + + R L + Sbjct: 46 WRPEDVSLQPDLNVWSV---LPENIQDAYAKNLLVLTFLDTHQGDIGMPVVSRSLDDHFH 102 Query: 113 CRQYLLR--QAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQT 168 R+ +L A E AVH+ ++ I + ++ ELF+ + ++ + + Y + Sbjct: 103 QRKAVLNFMGAMENAVHAKSYSNIFMTYMSNQKIDELFHWGEKHTNLQNIMSLIVGYYKE 162 Query: 169 LSSPSFTTGTKDADQEFLQDLF--------VFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 L ++ + D + + F V V E FY+GF L K++ Sbjct: 163 LDRYNYLKQFESNDPGYSETDFNIAQFKAMVASVYLETWLFYSGFYYPLFFYGQGKLMQA 222 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 E I+RDES+H G+ + ++ E ++ E Q++ +H+ LLE+ + + Sbjct: 223 GEIINLILRDESIH---GL-YVGRLAQEVFETFSNELQEQLTQWVHDF-LLELYHEQNEL 277 Query: 281 PKGFVGLNAPS--CEQYMQFIANRRCHQIGLEPLFK 314 + S + ++++ AN+ +G +P F+ Sbjct: 278 VESIYDAVELSHDVKIFVRYNANKALMNLGFDPYFE 313 >gi|306827912|ref|ZP_07461179.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes ATCC 10782] gi|304429831|gb|EFM32873.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes ATCC 10782] Length = 337 Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust. Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +DL W+S L +D + +I R +++ A +A +H Sbjct: 44 VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF +H+ ++ I ++L E I W + TQ+ Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148 Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L + + TG + V + G Y GF L KM ++ Sbjct: 149 LQDRARVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202 Query: 224 YQYIMRDESLH 234 + I+RD+ +H Sbjct: 203 IRLILRDKVIH 213 >gi|153820502|ref|ZP_01973169.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio cholerae NCTC 8457] gi|126508955|gb|EAZ71549.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio cholerae NCTC 8457] Length = 155 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 3/106 (2%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P EV + D + L D E+ + NL + +S+ + +A+ +S PE Sbjct: 49 WRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEL 105 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +F E +HS ++ +II ++ D +F+ E I +A Sbjct: 106 ETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIKRA 151 >gi|21909837|ref|NP_664105.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS315] gi|28896468|ref|NP_802818.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes SSI-1] gi|50913718|ref|YP_059690.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10394] gi|21904023|gb|AAM78908.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes MGAS315] gi|28811719|dbj|BAC64651.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes SSI-1] gi|50902792|gb|AAT86507.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10394] Length = 337 Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust. Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +DL W+S L +D + +I R +++ A +A +H Sbjct: 44 VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF +H+ ++ I ++L E I W + TQ+ Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148 Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L + + TG + V + G Y GF L KM ++ Sbjct: 149 LQDRARVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202 Query: 224 YQYIMRDESLH 234 + I+RD+ +H Sbjct: 203 IRLILRDKVIH 213 >gi|209558898|ref|YP_002285370.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes NZ131] gi|209540099|gb|ACI60675.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Streptococcus pyogenes NZ131] Length = 337 Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust. Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +DL W+S L +D + +I R +++ A +A +H Sbjct: 44 VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF +H+ ++ I ++L E I W + TQ+ Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148 Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L + + TG + V + G Y GF L KM ++ Sbjct: 149 LQDRARVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202 Query: 224 YQYIMRDESLH 234 + I+RD+ +H Sbjct: 203 IRLILRDKVIH 213 >gi|94993745|ref|YP_601843.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10750] gi|94547253|gb|ABF37299.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10750] Length = 337 Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust. Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +DL W+S L +D + +I R +++ A +A +H Sbjct: 44 VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF +H+ ++ I ++L E I W + TQ+ Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148 Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L + + TG + V + G Y GF L KM ++ Sbjct: 149 LQDRARVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202 Query: 224 YQYIMRDESLH 234 + I+RD+ +H Sbjct: 203 IRLILRDKVIH 213 >gi|15674552|ref|NP_268726.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes M1 GAS] gi|71910160|ref|YP_281710.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS5005] gi|94987981|ref|YP_596082.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS9429] gi|94989855|ref|YP_597955.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10270] gi|94991863|ref|YP_599962.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS2096] gi|13621658|gb|AAK33447.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes M1 GAS] gi|71852942|gb|AAZ50965.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS5005] gi|94541489|gb|ABF31538.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS9429] gi|94543363|gb|ABF33411.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10270] gi|94545371|gb|ABF35418.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS2096] Length = 337 Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust. Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +DL W+S L +D + +I R +++ A +A +H Sbjct: 44 VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF +H+ ++ I ++L E I W + TQ+ Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148 Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L + + TG + V + G Y GF L KM ++ Sbjct: 149 LQDRARVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202 Query: 224 YQYIMRDESLH 234 + I+RD+ +H Sbjct: 203 IRLILRDKVIH 213 >gi|139474322|ref|YP_001129038.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes str. Manfredo] gi|134272569|emb|CAM30835.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus pyogenes str. Manfredo] Length = 337 Score = 35.8 bits (81), Expect = 9.1, Method: Compositional matrix adjust. Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 26/191 (13%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108 N W+P +VP+ +DL W+S L +D + +I R +++ A +A +H Sbjct: 44 VTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGLTLLDTVQATVGDVAQIQHS 100 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 + AF +H+ ++ I ++L E I W + TQ+ Sbjct: 101 QTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSE-----------QIEEAHEWVVS-TQS 148 Query: 169 LSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 L + + TG + V + G Y GF L KM ++ Sbjct: 149 LQDRARVLIPYYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNTSDI 202 Query: 224 YQYIMRDESLH 234 + I+RD+ +H Sbjct: 203 IRLILRDKVIH 213 >gi|269976951|ref|ZP_06183925.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] gi|269934782|gb|EEZ91342.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] Length = 333 Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 20/117 (17%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIYR 106 +N W+P +VP+ +DL W N L+D ER + R L + ++ V + I Sbjct: 42 TSNFWLPEKVPLSNDLPSW---NQLSDMERSVTMRVFTGLTMLDTVQATVGE--ISQIQD 96 Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 ++ E Y AF +AVH+ ++ I ++L P I A WA+ Sbjct: 97 GITEHEQAIY-ANIAFMQAVHARSYSSIFSTLS-----------NTPEIDAAYTWAV 141 >gi|225869037|ref|YP_002744985.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus equi subsp. zooepidemicus] gi|225702313|emb|CAX00111.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus equi subsp. zooepidemicus] Length = 337 Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust. Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 32/194 (16%) Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR---NLGFFASSESLVANNIVLAIY 105 N W+P +VP+ +DL W+S L +D + +I R L + ++ V + V I Sbjct: 44 VTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGLTLLDTVQATVGD--VAQIQ 98 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 L++ E Y AF A+H+ ++ G +F+ I +W + Sbjct: 99 HSLTDHEQVIY-TNFAFMVAIHARSY-----------GTIFSTLCSSQQIEEAHDWVVS- 145 Query: 166 TQTLSSPS-----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 T++L + + TG + V + G Y GF L KM Sbjct: 146 TESLQERARVLIPYYTGNDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKMPNT 199 Query: 221 AEQYQYIMRDESLH 234 ++ + I+RD+ +H Sbjct: 200 SDIIRLILRDKVIH 213 Searching..................................................done Results from round 2 >gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254040522|gb|ACT57318.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254040641|gb|ACT57437.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 352/352 (100%), Positives = 352/352 (100%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ Sbjct: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD Sbjct: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID Sbjct: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA Sbjct: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD Sbjct: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 >gi|288941383|ref|YP_003443623.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM 180] gi|288896755|gb|ADC62591.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM 180] Length = 458 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 232/349 (66%), Positives = 283/349 (81%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 TGL + G RV VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M Sbjct: 110 ATGLESLAMGASRVRVDDKRIINCRADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNA 169 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DLALWK +GLT+DERL++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE Sbjct: 170 DLALWKDPHGLTEDERLIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 229 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY++ SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ Sbjct: 230 EALHTHAYQYVVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPHFQTGTPENDQ 289 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYI+RDES+H+NFGIDVIN Sbjct: 290 KLLRELVAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVIN 349 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLWT EF+Q+ M+ EA LE YAH+TMP+G +GLNA E Y+ FIANRR Sbjct: 350 QIKIENPHLWTPEFRQELVGMIREAVELEARYAHDTMPRGVLGLNAQMFEDYLHFIANRR 409 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL + NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD Sbjct: 410 CAQIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALNWD 458 >gi|220935777|ref|YP_002514676.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7] gi|219997087|gb|ACL73689.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. HL-EbGR7] Length = 408 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 226/349 (64%), Positives = 287/349 (82%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 NTGL I+ G +R+ VDDK+++N R+D+NQL+P KY WAW+KYL C NHWMP E+ M Sbjct: 60 NTGLEDIELGAERIRVDDKKIINCRADLNQLVPFKYQWAWQKYLDGCANHWMPQEINMNA 119 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE Sbjct: 120 DIALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 179 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +T+ L+ P F TGT + DQ Sbjct: 180 EALHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTRYLADPDFHTGTPENDQ 239 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L++L FYV+FEG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVIN Sbjct: 240 KLLRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVIN 299 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT F+++ RTM+ +A LE YA +TMP+G +G+NA E+Y+ FIANRR Sbjct: 300 QIKVENPHLWTAAFKEEMRTMIRDAVELEAQYARDTMPRGVLGMNAAMFEEYLHFIANRR 359 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL ++ ENPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD Sbjct: 360 CAQIGLAEIYPGAENPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 408 >gi|161525957|ref|YP_001580969.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia multivorans ATCC 17616] gi|160343386|gb|ABX16472.1| Ribonucleoside-diphosphate reductase [Burkholderia multivorans ATCC 17616] Length = 396 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 217/344 (63%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 53 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 112 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 113 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 172 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 173 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 232 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 233 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 292 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIG Sbjct: 293 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 352 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 353 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 396 >gi|307731037|ref|YP_003908261.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003] gi|307585572|gb|ADN58970.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003] Length = 411 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 219/358 (61%), Positives = 271/358 (75%), Gaps = 7/358 (1%) Query: 2 ANNTGLSPIQAG-------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54 AN+ ++P+ G E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHW Sbjct: 54 ANDIAVAPVARGAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHW 113 Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 MP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECR Sbjct: 114 MPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 173 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P F Sbjct: 174 QFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGF 233 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 TGT + DQ L+ L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H Sbjct: 234 KTGTLETDQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMH 293 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 NFGID+INQIK+ENP LWT EF+ + R + +A LE YA +TMP+G +GLNA + Sbjct: 294 CNFGIDLINQIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKS 353 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Y++FI NRRC QIGL+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 354 YLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 411 >gi|110635036|ref|YP_675244.1| ribonucleotide-diphosphate reductase subunit beta [Mesorhizobium sp. BNC1] gi|110286020|gb|ABG64079.1| ribonucleotide reductase [Chelativorans sp. BNC1] Length = 369 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 273/351 (77%), Positives = 304/351 (86%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + TGL I+ G RV+VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M Sbjct: 19 TDATGLGTIERGAGRVSVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSM 78 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 79 QADIALWKSRDGLTEDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 138 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL+YT+ L P+F TGT +A Sbjct: 139 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALEYTRHLDDPNFRTGTPEA 198 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV Sbjct: 199 DQAFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 258 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQIK ENPHLWT EFQ++ R ML +A LE AY +TMP+GF+GLNA CEQYM FIAN Sbjct: 259 INQIKHENPHLWTPEFQEELRRMLKDAAELEAAYGRDTMPRGFLGLNAGQCEQYMHFIAN 318 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RRC Q+GL P+F TENPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 319 RRCAQLGLPPVFPETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 369 >gi|312795100|ref|YP_004028022.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia rhizoxinica HKI 454] gi|312166875|emb|CBW73878.1| Ribonucleoside-diphosphate reductase beta chain (EC 1.17.4.1) [Burkholderia rhizoxinica HKI 454] Length = 416 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 220/345 (63%), Positives = 268/345 (77%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 SP A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 72 SPAPAPEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 131 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 132 WKDPNGLTDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 191 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ PSF TGT +ADQ+ L+ Sbjct: 192 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPSFKTGTLEADQKLLK 251 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ Sbjct: 252 SLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 311 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT F+++ + A LE YA +TMP+G +GLNA + Y++FI NRRC QI Sbjct: 312 ENPHLWTPAFREEICGLFKHAVELEYRYAEDTMPRGVLGLNAGMFKSYLRFICNRRCQQI 371 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GLEPLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 372 GLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416 >gi|300113307|ref|YP_003759882.1| ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113] gi|299539244|gb|ADJ27561.1| Ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113] Length = 412 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 231/347 (66%), Positives = 284/347 (81%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M D+ Sbjct: 66 GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ+ Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI Sbjct: 246 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 305 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLW+ F+Q++ M+ EA LE YAH+TMP+G +GLNAP E+Y++FIANRRC Sbjct: 306 KLENPHLWSDSFKQETLRMIQEAVSLETQYAHDTMPRGVLGLNAPMFEEYLKFIANRRCA 365 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL + NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD Sbjct: 366 QIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412 >gi|254253304|ref|ZP_04946622.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia dolosa AUO158] gi|124895913|gb|EAY69793.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia dolosa AUO158] Length = 403 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 217/344 (63%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIG Sbjct: 300 NPHLWTPEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|325519933|gb|EGC99191.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp. TJI49] Length = 403 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 218/352 (61%), Positives = 272/352 (77%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 52 VAPQASAVPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 111 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 112 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 171 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT + Sbjct: 172 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 231 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 ADQ+ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID Sbjct: 232 ADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGID 291 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+ Sbjct: 292 LINQIKLENPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFIS 351 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 352 NRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|189349324|ref|YP_001944952.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia multivorans ATCC 17616] gi|221213238|ref|ZP_03586213.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD1] gi|189333346|dbj|BAG42416.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia multivorans ATCC 17616] gi|221166690|gb|EED99161.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD1] Length = 403 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 217/344 (63%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|53804295|ref|YP_114081.1| ribonucleotide-diphosphate reductase subunit beta [Methylococcus capsulatus str. Bath] gi|53758056|gb|AAU92347.1| ribonucleoside-diphosphate reductase, beta subunit [Methylococcus capsulatus str. Bath] Length = 403 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 229/349 (65%), Positives = 286/349 (81%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 TGL I+ G +R+ VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M Sbjct: 55 ATGLENIEMGARRIQVDDKRIINCRADLNQLVPFKYQWAWQKYLDACANHWMPQEINMNA 114 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS +GLT DER++IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE Sbjct: 115 DIALWKSADGLTPDERIIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 174 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY++ SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ Sbjct: 175 EALHTHAYQYVVESLGLDEGEVFNMYREVPAVARKAEWALPFTQYLADPYFKTGTPENDQ 234 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVIN Sbjct: 235 KLLRELIAFYVIFEGIFFYVGFTQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVIN 294 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT F+ + M+ EA +E YA++TMP+G +GLNAP ++Y+QFIANRR Sbjct: 295 QIKVENPHLWTDGFKVEMVQMIREAVDIETQYAYDTMPRGILGLNAPMFKEYLQFIANRR 354 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL + NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD Sbjct: 355 CAQIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGTLSWD 403 >gi|75677068|ref|YP_319489.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter winogradskyi Nb-255] gi|74421938|gb|ABA06137.1| ribonucleotide reductase [Nitrobacter winogradskyi Nb-255] Length = 391 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 268/351 (76%), Positives = 296/351 (84%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + GL I G RV VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M Sbjct: 41 TDAAGLGDIDRGGARVRVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSM 100 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 101 QADIALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 160 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F TGT +A Sbjct: 161 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEA 220 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ FL+DL FYVVFEGMWFYTGF QILSLGR NKMVGIAEQYQYI+RDES+HLNFGID+ Sbjct: 221 DQAFLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDI 280 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQIKIENPHLW+K FQ++ R ML A LE AY +TMP+GF+GLNA CE YM IAN Sbjct: 281 INQIKIENPHLWSKPFQEEVRAMLKNAADLEAAYGRDTMPRGFLGLNATLCETYMHVIAN 340 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RRC Q+GL P+F +NPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 341 RRCAQLGLAPVFPDADNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 391 >gi|289208615|ref|YP_003460681.1| ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix] gi|288944246|gb|ADC71945.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix] Length = 412 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 225/348 (64%), Positives = 288/348 (82%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G +R+ VDDK+++N +D+NQL+P KY WAW+KYL C NHWMP E+ M D Sbjct: 65 TGLEDLEMGAERIRVDDKKIINCHADLNQLVPFKYKWAWQKYLDGCANHWMPQEINMNAD 124 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 125 IALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 184 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY + SLGLDEGE+FNMYREVPS+ KA WAL +T+ L+ P+F TGT +ADQ+ Sbjct: 185 ALHTHAYQYCVESLGLDEGEIFNMYREVPSVATKAEWALPFTKHLADPNFRTGTPEADQK 244 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L++L FYVVFEG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVINQ Sbjct: 245 LLRELIAFYVVFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVINQ 304 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK+ENPHLWT+EF+ + RT++ +A LE YA +TMP+G +G+NA E+Y+ FIANRRC Sbjct: 305 IKVENPHLWTEEFKNEMRTLISDAVELEAQYARDTMPRGVLGMNAQMFEEYLHFIANRRC 364 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL ++ +NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD Sbjct: 365 AQIGLAEMYPGADNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412 >gi|72163401|ref|YP_291058.1| ribonucleotide-diphosphate reductase subunit beta [Thermobifida fusca YX] gi|71917133|gb|AAZ57035.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX] Length = 354 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 274/350 (78%), Positives = 309/350 (88%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 N TGL IQ+G RV+V+DKRM+N+R+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV MQ Sbjct: 5 NTTGLGEIQSGAARVDVEDKRMINSRADVNQLLPLKYRWAWEKYLAACNNHWMPTEVSMQ 64 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWKSK+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YRHL+NPECRQYLLRQAF Sbjct: 65 ADIALWKSKDGLTEDERLMVKRNLGFFATAESLVANNIVLAVYRHLTNPECRQYLLRQAF 124 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEAVH+HTFQYI SLGLDEGELFNMYREVPSITAK WAL+YT+ L +P+FTTGT +AD Sbjct: 125 EEAVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALRYTRNLENPNFTTGTPEAD 184 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 Q FL+DL FYVV EGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI Sbjct: 185 QAFLRDLVAFYVVLEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 244 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 NQIKIENPHLWT+EFQ + RTML EA LE AY ETMP+G +GLNA CEQYM+FI +R Sbjct: 245 NQIKIENPHLWTEEFQDEVRTMLIEACELEAAYGRETMPRGILGLNAKLCEQYMRFITDR 304 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 R Q+GL P+F TENPFPWMSE++DLKKEKNFFETRV EYQ G+ L WD Sbjct: 305 RAEQLGLAPIFGETENPFPWMSEMMDLKKEKNFFETRVIEYQTGSGLSWD 354 >gi|192360823|ref|YP_001982048.1| ribonucleotide-diphosphate reductase subunit beta [Cellvibrio japonicus Ueda107] gi|190686988|gb|ACE84666.1| ribonucleoside reductase, beta subunit [Cellvibrio japonicus Ueda107] Length = 429 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 222/352 (63%), Positives = 285/352 (80%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + GL ++ G R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV Sbjct: 78 LDPAPGLEELEMGAARIQVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 137 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWKSK+GLT+DER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQ Sbjct: 138 MTADIALWKSKDGLTEDERRIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQ 197 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +FEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W+L +T +L +P+FTTGT + Sbjct: 198 SFEEAIHTHAYQYCIESLGMDEGEVFNMYRELPSVANKAAWSLHHTHSLGNPTFTTGTPE 257 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQE L++L FYVV EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID Sbjct: 258 TDQELLRNLVAFYVVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 317 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 VINQIK+ENPHLWT EFQQ+ M+ E T LEI YA ++MP+G +G+NA E+Y+ FIA Sbjct: 318 VINQIKLENPHLWTAEFQQEVLQMILEGTELEIQYARDSMPRGVLGMNAAMMEEYLHFIA 377 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC Q+GL+ F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 378 NRRCAQLGLKEQFPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 429 >gi|170699976|ref|ZP_02891003.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria IOP40-10] gi|170135124|gb|EDT03425.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria IOP40-10] Length = 403 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 215/344 (62%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|115350552|ref|YP_772391.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia ambifaria AMMD] gi|172059584|ref|YP_001807236.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia ambifaria MC40-6] gi|115280540|gb|ABI86057.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria AMMD] gi|171992101|gb|ACB63020.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MC40-6] Length = 403 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 215/344 (62%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|296160506|ref|ZP_06843322.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1] gi|295889255|gb|EFG69057.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1] Length = 415 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 216/349 (61%), Positives = 265/349 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M Sbjct: 67 NAAAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSR 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFE Sbjct: 127 DIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + Y L+ P+F TGT +ADQ Sbjct: 187 EAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQ 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 L+ L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN Sbjct: 247 TLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLIN 306 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENP LWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRR Sbjct: 307 QIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRR 366 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 367 CQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 415 >gi|209885874|ref|YP_002289731.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha carboxidovorans OM5] gi|209874070|gb|ACI93866.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha carboxidovorans OM5] Length = 377 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 273/351 (77%), Positives = 299/351 (85%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A TGL I RV+VD+KRM+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M Sbjct: 27 AEQTGLGEIDRTGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLSGCNNHWMPTEVSM 86 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 87 QADIALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 146 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F TGT +A Sbjct: 147 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTKNLDDPDFKTGTLEA 206 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV Sbjct: 207 DQAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 266 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQIK+ENPHLWTK FQ + R M+ EA LE AY +TMP+GF+GLNA CEQYM FIAN Sbjct: 267 INQIKLENPHLWTKAFQDEVRGMISEAAGLEAAYGRDTMPRGFLGLNAALCEQYMHFIAN 326 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RRC QIGL P+F TENPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 327 RRCAQIGLAPVFAETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 377 >gi|78065156|ref|YP_367925.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp. 383] gi|77965901|gb|ABB07281.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383] Length = 403 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 215/344 (62%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|134294683|ref|YP_001118418.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia vietnamiensis G4] gi|134137840|gb|ABO53583.1| Ribonucleoside-diphosphate reductase [Burkholderia vietnamiensis G4] Length = 403 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 215/344 (62%), Positives = 268/344 (77%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKHAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|292490774|ref|YP_003526213.1| ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4] gi|291579369|gb|ADE13826.1| Ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4] Length = 415 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 230/347 (66%), Positives = 285/347 (82%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYL+ C NHWMP E+ M D+ Sbjct: 69 GIENIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLNGCANHWMPQEINMNADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA Sbjct: 129 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ+ Sbjct: 189 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQYLADPQFHTGTDENDQKL 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI Sbjct: 249 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT F+Q++ M+ EA LE YA++TMP+G +GLNAP ++Y++FIANRRC Sbjct: 309 KIENPHLWTDSFKQETIQMIREAVSLETQYAYDTMPRGVLGLNAPMFDEYLKFIANRRCA 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL + NPFPWMSE++DLKKEKNFFETRVTEYQ G LKWD Sbjct: 369 QIGLPEQYPGASNPFPWMSEILDLKKEKNFFETRVTEYQTGGALKWD 415 >gi|91785256|ref|YP_560462.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia xenovorans LB400] gi|91689210|gb|ABE32410.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans LB400] Length = 411 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 215/339 (63%), Positives = 264/339 (77%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 73 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 132 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 133 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 192 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDEGE+FN Y EV SI AK + + Y L+ P+F TGT +ADQ L+ L VF Sbjct: 193 IVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 252 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW Sbjct: 253 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 312 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+PL+ Sbjct: 313 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 372 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 373 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 411 >gi|171318520|ref|ZP_02907672.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5] gi|171096306|gb|EDT41212.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5] Length = 403 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 215/344 (62%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|226227154|ref|YP_002761260.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas aurantiaca T-27] gi|226090345|dbj|BAH38790.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas aurantiaca T-27] Length = 371 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 269/349 (77%), Positives = 297/349 (85%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 TGL I RV VDDK M+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV MQ Sbjct: 23 ATGLGEIDRHGGRVRVDDKAMINCRADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQA 82 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DLA+W+S++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFE Sbjct: 83 DLAIWRSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFE 142 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+HTFQYI SLGLDEGELFNMYREVPSITAKA WAL+YTQ L+ P F+TGT + DQ Sbjct: 143 EAIHTHTFQYICESLGLDEGELFNMYREVPSITAKAAWALKYTQHLADPGFSTGTPETDQ 202 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVIN Sbjct: 203 AFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVIN 262 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLW+ FQ++ R ML EA LE+AY +TMP+GF+GLNA CE YM FI NRR Sbjct: 263 QIKVENPHLWSAAFQEEVRQMLAEACELEVAYGRDTMPRGFLGLNAALCETYMHFITNRR 322 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C Q+GL P+F T+NPFPWMSE IDLKKEKNFFETRV EYQ G LKWD Sbjct: 323 CAQLGLAPVFPETDNPFPWMSEAIDLKKEKNFFETRVIEYQNGGALKWD 371 >gi|221202418|ref|ZP_03575450.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2M] gi|221208122|ref|ZP_03581127.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2] gi|221172025|gb|EEE04467.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2] gi|221177695|gb|EEE10110.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia multivorans CGD2M] Length = 372 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 217/344 (63%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 29 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 88 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 89 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 148 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 149 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 208 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 209 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 268 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIG Sbjct: 269 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 328 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 329 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372 >gi|293609145|ref|ZP_06691448.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024] gi|292829718|gb|EFF88080.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024] Length = 427 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWTAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|77165986|ref|YP_344511.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosococcus oceani ATCC 19707] gi|254436303|ref|ZP_05049809.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus oceani AFC27] gi|76884300|gb|ABA58981.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC 19707] gi|207087993|gb|EDZ65266.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus oceani AFC27] Length = 412 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 231/347 (66%), Positives = 284/347 (81%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M D+ Sbjct: 66 GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ+ Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI Sbjct: 246 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 305 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLW+ F+Q++ M+ EA LE YAH+TMP+G +GLNAP E+Y++FIANRRC Sbjct: 306 KLENPHLWSDSFKQETLRMIQEAVSLETQYAHDTMPRGVLGLNAPMFEEYLKFIANRRCA 365 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL + NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD Sbjct: 366 QIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412 >gi|92119123|ref|YP_578852.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter hamburgensis X14] gi|91802017|gb|ABE64392.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14] Length = 416 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 270/351 (76%), Positives = 297/351 (84%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + TGL I RV VDDKRM+NAR+DVNQLLPLKYGWAWEKYLS CNNHWMPTEV M Sbjct: 66 TDATGLGAIDRSGGRVRVDDKRMINARADVNQLLPLKYGWAWEKYLSGCNNHWMPTEVSM 125 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 126 QADIALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 185 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEAVH+HTFQYI+ SLGLDEGELFNMYREV SIT KA WAL++T+ L P F TGT +A Sbjct: 186 FEEAVHTHTFQYIVESLGLDEGELFNMYREVSSITDKAAWALKHTRHLDDPGFKTGTPEA 245 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ FL+DL FYVVFEGMWFYTGF QILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV Sbjct: 246 DQAFLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 305 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQIKIENPHLW+K FQ++ R ML A LE AY +TMP+GF+GLNA CEQYM IAN Sbjct: 306 INQIKIENPHLWSKPFQEEVRAMLKNAAELEAAYGRDTMPRGFLGLNAALCEQYMHVIAN 365 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RRC Q+GL P+F +NPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 366 RRCAQLGLAPVFAEADNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 416 >gi|170731918|ref|YP_001763865.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia MC0-3] gi|169815160|gb|ACA89743.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia MC0-3] Length = 403 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 215/344 (62%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|206561765|ref|YP_002232530.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia J2315] gi|254246390|ref|ZP_04939711.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia cenocepacia PC184] gi|124871166|gb|EAY62882.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia cenocepacia PC184] gi|198037807|emb|CAR53751.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia cenocepacia J2315] Length = 403 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 216/344 (62%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 60 PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|209521089|ref|ZP_03269819.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160] gi|209498472|gb|EDZ98597.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160] Length = 411 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 219/358 (61%), Positives = 272/358 (75%), Gaps = 7/358 (1%) Query: 2 ANNTGLSPIQAGEK-------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54 AN+ ++P+ RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHW Sbjct: 54 ANDIAVAPVAHAGNAAAASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHW 113 Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 MP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECR Sbjct: 114 MPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 173 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P+F Sbjct: 174 QFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAF 233 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 TGT +ADQ L+ L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H Sbjct: 234 KTGTLEADQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMH 293 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 NFGID+INQIK+ENPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Sbjct: 294 CNFGIDLINQIKLENPHLWTAEFRAEIRAIFQQAVELEYRYAEDTMPRGVLGLNASMFKS 353 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Y++FI NRRC QIGL+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 354 YLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411 >gi|295677726|ref|YP_003606250.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002] gi|295437569|gb|ADG16739.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002] Length = 411 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 219/358 (61%), Positives = 272/358 (75%), Gaps = 7/358 (1%) Query: 2 ANNTGLSPIQAGEK-------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54 AN+ ++P+ RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHW Sbjct: 54 ANDIAVAPVAHAGNAAAASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHW 113 Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 MP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECR Sbjct: 114 MPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 173 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 Q+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P+F Sbjct: 174 QFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAF 233 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 TGT +ADQ L+ L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H Sbjct: 234 KTGTLEADQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMH 293 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 NFGID+INQIK+ENPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Sbjct: 294 CNFGIDLINQIKLENPHLWTAEFRAEIRAIFQQAVELEYRYAEDTMPRGVLGLNASMFKS 353 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Y++FI NRRC QIGL+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 354 YLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411 >gi|107021673|ref|YP_620000.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia AU 1054] gi|116688619|ref|YP_834242.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia cenocepacia HI2424] gi|105891862|gb|ABF75027.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia AU 1054] gi|116646708|gb|ABK07349.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia HI2424] Length = 382 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 215/344 (62%), Positives = 269/344 (78%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW Sbjct: 39 PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 98 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+ Sbjct: 99 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 158 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 159 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 218 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E Sbjct: 219 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 278 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG Sbjct: 279 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 338 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 339 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 382 >gi|169797064|ref|YP_001714857.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AYE] gi|213156529|ref|YP_002318190.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii AB0057] gi|215484526|ref|YP_002326761.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter baumannii AB307-0294] gi|239501302|ref|ZP_04660612.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB900] gi|260555643|ref|ZP_05827863.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii ATCC 19606] gi|301345633|ref|ZP_07226374.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB056] gi|301512780|ref|ZP_07238017.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB058] gi|301596291|ref|ZP_07241299.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB059] gi|169149991|emb|CAM87885.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii AYE] gi|193076530|gb|ABO11186.2| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter baumannii ATCC 17978] gi|213055689|gb|ACJ40591.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii AB0057] gi|213987168|gb|ACJ57467.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter baumannii AB307-0294] gi|260410554|gb|EEX03852.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii ATCC 19606] Length = 427 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|50083944|ref|YP_045454.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. ADP1] gi|49529920|emb|CAG67632.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter sp. ADP1] Length = 427 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 221/348 (63%), Positives = 280/348 (80%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL I+ G RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 80 TAGLQEIETGAARVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNH 139 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS+NGLT+DER+++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQAFE Sbjct: 140 DIALWKSENGLTEDERVIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQAFE 199 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YTQ+LS P F TGT + DQ Sbjct: 200 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVARKAAWGLKYTQSLSDPKFETGTPETDQ 259 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L++L FY V EG++FY GF QILS+GR NKM G++EQ+QYI+RDES+H+NFGID+IN Sbjct: 260 QLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVSEQFQYILRDESMHVNFGIDMIN 319 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLWT EFQQ+ M+ E TLLEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 320 QIKIENPHLWTAEFQQEVIQMIVEGTLLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRR 379 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL ++ NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 380 LAQLGLPEQYRGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|184157022|ref|YP_001845361.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ACICU] gi|183208616|gb|ACC56014.1| Ribonucleotide reductase, beta subunit [Acinetobacter baumannii ACICU] Length = 427 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|121598515|ref|YP_991780.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei SAVP1] gi|124385654|ref|YP_001027273.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei NCTC 10229] gi|126439848|ref|YP_001060484.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 668] gi|126451145|ref|YP_001082790.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei NCTC 10247] gi|126453692|ref|YP_001067748.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 1106a] gi|134280207|ref|ZP_01766918.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 305] gi|166998593|ref|ZP_02264451.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei PRL-20] gi|167721297|ref|ZP_02404533.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei DM98] gi|167740266|ref|ZP_02413040.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 14] gi|167817486|ref|ZP_02449166.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 91] gi|167847373|ref|ZP_02472881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei B7210] gi|167895962|ref|ZP_02483364.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 7894] gi|167904346|ref|ZP_02491551.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei NCTC 13177] gi|167912606|ref|ZP_02499697.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 112] gi|217420440|ref|ZP_03451945.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 576] gi|226196790|ref|ZP_03792369.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|237813879|ref|YP_002898330.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei MSHR346] gi|238561262|ref|ZP_00442338.2| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei GB8 horse 4] gi|242316188|ref|ZP_04815204.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1106b] gi|254178822|ref|ZP_04885476.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei ATCC 10399] gi|254199038|ref|ZP_04905453.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei S13] gi|254202774|ref|ZP_04909137.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei FMH] gi|254259655|ref|ZP_04950709.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1710a] gi|254299327|ref|ZP_04966777.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 406e] gi|121227325|gb|ABM49843.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei SAVP1] gi|124293674|gb|ABN02943.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei NCTC 10229] gi|126219341|gb|ABN82847.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 668] gi|126227334|gb|ABN90874.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1106a] gi|126244015|gb|ABO07108.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei NCTC 10247] gi|134248214|gb|EBA48297.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 305] gi|147747021|gb|EDK54098.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei FMH] gi|157808756|gb|EDO85926.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 406e] gi|160694736|gb|EDP84744.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei ATCC 10399] gi|169656868|gb|EDS88265.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei S13] gi|217395852|gb|EEC35869.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 576] gi|225931050|gb|EEH27058.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|237506031|gb|ACQ98349.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei MSHR346] gi|238524965|gb|EEP88395.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei GB8 horse 4] gi|242139427|gb|EES25829.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1106b] gi|243065276|gb|EES47462.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei PRL-20] gi|254218344|gb|EET07728.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1710a] Length = 403 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 219/345 (63%), Positives = 271/345 (78%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 59 SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 118 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 119 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 178 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+FTTGT +ADQ+ L+ Sbjct: 179 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 238 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ Sbjct: 239 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 298 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QI Sbjct: 299 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 358 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 359 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|85714830|ref|ZP_01045816.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A] gi|85698316|gb|EAQ36187.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A] Length = 389 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 270/351 (76%), Positives = 297/351 (84%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A+ TGL I G RV VDDKRM+NAR+DVNQLLP KY WAWEKYLS CNNHWMPTEV M Sbjct: 39 ADATGLGDIDRGAARVRVDDKRMINARADVNQLLPFKYRWAWEKYLSGCNNHWMPTEVSM 98 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS++GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA Sbjct: 99 QADIALWKSRDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 158 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F TGT +A Sbjct: 159 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEA 218 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ FL+DL FYVVFEGMWFYTGF QILSLGR NKM+GIAEQYQYI+RDES+HLNFGIDV Sbjct: 219 DQAFLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMIGIAEQYQYILRDESIHLNFGIDV 278 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQIKIENPHLWTK FQ + R ML A LE AY +TMP+GF+GLNA CE YM IAN Sbjct: 279 INQIKIENPHLWTKTFQDEVRAMLKNAAELEAAYGRDTMPRGFLGLNAALCETYMHVIAN 338 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RRC Q+GL P+F T+NPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 339 RRCAQLGLAPVFAETDNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 389 >gi|260551040|ref|ZP_05825245.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter sp. RUH2624] gi|260405988|gb|EEW99475.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter sp. RUH2624] Length = 427 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|187925407|ref|YP_001897049.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia phytofirmans PsJN] gi|187716601|gb|ACD17825.1| Ribonucleoside-diphosphate reductase [Burkholderia phytofirmans PsJN] Length = 415 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 215/348 (61%), Positives = 264/348 (75%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D Sbjct: 68 AAAETAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRD 127 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEE Sbjct: 128 IALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEE 187 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + Y L+ P+F TGT +ADQ Sbjct: 188 AIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQT 247 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+ L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ Sbjct: 248 LLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQ 307 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK+ENP LWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC Sbjct: 308 IKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRC 367 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 368 QQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 415 >gi|169634186|ref|YP_001707922.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii SDF] gi|169152978|emb|CAP02026.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii] Length = 427 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|299134880|ref|ZP_07028072.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2] gi|298590690|gb|EFI50893.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2] Length = 373 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 269/350 (76%), Positives = 300/350 (85%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 TGL I RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ Sbjct: 24 EQTGLGAIDRSGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLAGCNNHWMPTEVSMQ 83 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWKS++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF Sbjct: 84 ADIALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAF 143 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L +P F+TGT++AD Sbjct: 144 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQNLDNPDFSTGTQEAD 203 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 Q FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI Sbjct: 204 QSFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 263 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 NQIK+EN HLWTK FQ+ R M+ +A LE AY +TMP+GF+GLNA CEQYM FIANR Sbjct: 264 NQIKLENQHLWTKAFQEDVRGMIRDAAELEAAYGRDTMPRGFLGLNAALCEQYMHFIANR 323 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RC QIGL P+F TENPFPWMSE +DLKKEKNFFETRV EYQ G L W+ Sbjct: 324 RCAQIGLTPVFPETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 373 >gi|323527395|ref|YP_004229548.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001] gi|323384397|gb|ADX56488.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001] Length = 414 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 216/339 (63%), Positives = 265/339 (78%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 76 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 135 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 136 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 195 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P+F TGT +ADQ L+ L VF Sbjct: 196 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 255 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW Sbjct: 256 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 315 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+PL+ Sbjct: 316 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 375 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 376 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 414 >gi|256377255|ref|YP_003100915.1| ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM 43827] gi|255921558|gb|ACU37069.1| Ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM 43827] Length = 358 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 265/347 (76%), Positives = 296/347 (85%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL I+ G RV+VDDK M+NAR+DVNQLLPLKY WAWEKYL+ C NHWMPTEV MQ D+ Sbjct: 12 GLGEIERGAGRVHVDDKAMINARADVNQLLPLKYHWAWEKYLAGCANHWMPTEVSMQADI 71 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALW+S NGLT DER IKRNLGFFA+SESLVANN+VLA+YR+++NPECRQYLLRQAFEEA Sbjct: 72 ALWRSPNGLTADERHAIKRNLGFFATSESLVANNVVLAVYRNITNPECRQYLLRQAFEEA 131 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 VH+HTF+YI +SLGLDEGELFNMYREVPSIT KA WAL+YT++L P F TGT +ADQ F Sbjct: 132 VHTHTFEYICSSLGLDEGELFNMYREVPSITDKAAWALKYTKSLEDPEFRTGTPEADQAF 191 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID INQI Sbjct: 192 LRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDAINQI 251 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW + FQ + RTML EA LEIAY +TMP G +GLNA CEQYM+FI NRRC Sbjct: 252 KIENPHLWGEAFQAEVRTMLAEACELEIAYGRDTMPNGLLGLNAELCEQYMRFITNRRCA 311 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GLEP+F TENPFPWMSE +DLKKEKNFFETRVTEY G L WD Sbjct: 312 QLGLEPVFAATENPFPWMSEAVDLKKEKNFFETRVTEYASGGTLDWD 358 >gi|262373382|ref|ZP_06066661.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter junii SH205] gi|262313407|gb|EEY94492.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter junii SH205] Length = 427 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 222/346 (64%), Positives = 281/346 (81%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA+W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKASWGLKYTQSLSDPTFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|83719302|ref|YP_441701.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis E264] gi|83653127|gb|ABC37190.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia thailandensis E264] Length = 377 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 218/345 (63%), Positives = 270/345 (78%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 33 SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 92 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 93 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 152 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 153 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLK 212 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ Sbjct: 213 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 272 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QI Sbjct: 273 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 332 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 333 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 377 >gi|76808925|ref|YP_334881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 1710b] gi|254208116|ref|ZP_04914466.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei JHU] gi|76578378|gb|ABA47853.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia pseudomallei 1710b] gi|147752010|gb|EDK59077.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei JHU] Length = 376 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 219/345 (63%), Positives = 271/345 (78%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 32 SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 91 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 92 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 151 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+FTTGT +ADQ+ L+ Sbjct: 152 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 211 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ Sbjct: 212 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 271 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QI Sbjct: 272 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 331 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 332 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 376 >gi|90022104|ref|YP_527931.1| ribonucleotide-diphosphate reductase subunit beta [Saccharophagus degradans 2-40] gi|89951704|gb|ABD81719.1| Class Ia ribonucleoside-diphosphate reductase beta subunit [Saccharophagus degradans 2-40] Length = 423 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 221/352 (62%), Positives = 285/352 (80%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M GL ++ G +R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV Sbjct: 72 MDPTLGLEELEIGAERIEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 131 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WKS +GL++DER +I R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQ Sbjct: 132 MTADVATWKSPDGLSEDERRIIMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQ 191 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P+F TGT + Sbjct: 192 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSIAHTQGMSDPTFKTGTPE 251 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 ADQE L++L FYV+ EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID Sbjct: 252 ADQELLRNLIGFYVITEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 311 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 VINQIK+ENPHLWT+EFQ +++ M+ E T LEIAYA +TMP+G +G+NA E+Y+ FIA Sbjct: 312 VINQIKLENPHLWTEEFQAETKQMILEGTELEIAYARDTMPRGVLGMNAAMMEEYLHFIA 371 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRR Q+GL + +NPFPWMSE++DL+KEKNFFETRV EYQ G L W+ Sbjct: 372 NRRMAQLGLAEAYPGAKNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWE 423 >gi|170695324|ref|ZP_02886470.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M] gi|170139724|gb|EDT07906.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M] Length = 414 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 215/339 (63%), Positives = 263/339 (77%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 76 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 135 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 136 LTEDERRVVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 195 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P F TGT + DQ L+ L VF Sbjct: 196 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGFKTGTLETDQTLLRSLIVFA 255 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW Sbjct: 256 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 315 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+PL+ Sbjct: 316 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 375 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 376 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 414 >gi|192291019|ref|YP_001991624.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas palustris TIE-1] gi|192284768|gb|ACF01149.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris TIE-1] Length = 373 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 264/350 (75%), Positives = 290/350 (82%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + TGL I G RV VDDKRM+NAR+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV MQ Sbjct: 24 DTTGLGTIDRGAARVRVDDKRMINARADVNQLLPLKYHWAWEKYLAACNNHWMPTEVSMQ 83 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF Sbjct: 84 ADIALWKSRDGLTEDERHMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAF 143 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L P F TGT D Sbjct: 144 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALDYTKHLDDPHFETGTPATD 203 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 Q FL DL FYVVFEGMWFYTGFAQILSLGR KM GIAEQYQYI+RDES+HLNFGIDVI Sbjct: 204 QAFLLDLIAFYVVFEGMWFYTGFAQILSLGRRQKMTGIAEQYQYILRDESIHLNFGIDVI 263 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 NQIK+EN +WT FQ R M+H+A LE AY +TMP G +GLNA CE YM FIANR Sbjct: 264 NQIKLENAAVWTASFQDDIRGMIHDAAELEAAYGRDTMPHGLLGLNAALCESYMHFIANR 323 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RC Q+GL P+F T+NPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 324 RCVQLGLRPVFAETDNPFPWMSETMDLKKEKNFFETRVIEYQNGGALDWD 373 >gi|33593916|ref|NP_881560.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella pertussis Tohama I] gi|33598411|ref|NP_886054.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella parapertussis 12822] gi|33603351|ref|NP_890911.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella bronchiseptica RB50] gi|33563990|emb|CAE43255.1| ribonucleoside-diphosphate reductase beta chain [Bordetella pertussis Tohama I] gi|33574540|emb|CAE39187.1| ribonucleoside-diphosphate reductase beta chain [Bordetella parapertussis] gi|33577475|emb|CAE34740.1| ribonucleoside-diphosphate reductase beta chain [Bordetella bronchiseptica RB50] gi|332383335|gb|AEE68182.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella pertussis CS] Length = 398 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 212/349 (60%), Positives = 267/349 (76%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 L A RV V DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 50 AASLGASDATAGRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSR 109 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFE Sbjct: 110 DIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 169 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +ADQ Sbjct: 170 EAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHTGTPEADQ 229 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L+ L VF + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN Sbjct: 230 KLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLIN 289 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 IK+ENPHLWT EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANRR Sbjct: 290 TIKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRR 349 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIG+EPLF ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 350 CQQIGIEPLFPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398 >gi|332852155|ref|ZP_08433982.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii 6013150] gi|332867554|ref|ZP_08437707.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii 6013113] gi|332729527|gb|EGJ60866.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii 6013150] gi|332733971|gb|EGJ65116.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii 6013113] Length = 440 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 95 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 154 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 155 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 214 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 215 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 274 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 275 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 334 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 335 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 394 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 395 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 440 >gi|332872596|ref|ZP_08440564.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii 6014059] gi|332739125|gb|EGJ69984.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter baumannii 6014059] Length = 440 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 95 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 154 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 155 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 214 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 215 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 274 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 275 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 334 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 335 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 394 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 395 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 440 >gi|134097869|ref|YP_001103530.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|291007412|ref|ZP_06565385.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|133910492|emb|CAM00605.1| ribonucleoside-diphosphate reductase, beta subunit [Saccharopolyspora erythraea NRRL 2338] Length = 360 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 261/349 (74%), Positives = 300/349 (85%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 ++GL I RV+V +K M+N+R+DVNQLLPLKYGWAWEKYL+ CNNHWMPTEV MQ Sbjct: 12 SSGLGEIDRDGGRVDVAEKAMINSRADVNQLLPLKYGWAWEKYLAGCNNHWMPTEVSMQA 71 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS++GLTDDER+M+KRNLGFFA++ESLVANNIVLA+YRH++NPECRQYLLRQAFE Sbjct: 72 DIALWKSRDGLTDDERMMLKRNLGFFATAESLVANNIVLAVYRHITNPECRQYLLRQAFE 131 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EAVH+HTFQYI SLGLDEGELFNMYRE+PSI+ K WAL+YTQ L +P F GT +ADQ Sbjct: 132 EAVHTHTFQYICESLGLDEGELFNMYREIPSISDKDAWALRYTQNLENPDFEIGTPEADQ 191 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID IN Sbjct: 192 AFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCIN 251 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLWT EFQ++ RTML EA LE+AY +TMP+G +GLNA CE+YM+FI NRR Sbjct: 252 QIKIENPHLWTPEFQEEVRTMLTEACELEVAYGRDTMPRGILGLNAGLCEEYMRFITNRR 311 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C Q+GLEP+F T NPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 312 CAQLGLEPVFPETANPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 360 >gi|226953559|ref|ZP_03824023.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC 27244] gi|294649451|ref|ZP_06726876.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter haemolyticus ATCC 19194] gi|226835696|gb|EEH68079.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC 27244] gi|292824656|gb|EFF83434.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter haemolyticus ATCC 19194] Length = 427 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 223/346 (64%), Positives = 279/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER +I R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIIMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFHTGTPENDQIL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT FQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWTATFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLA 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|167825888|ref|ZP_02457359.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei 9] gi|167924622|ref|ZP_02511713.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei BCC215] gi|254180586|ref|ZP_04887184.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1655] gi|254190977|ref|ZP_04897483.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|157938651|gb|EDO94321.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|184211125|gb|EDU08168.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia pseudomallei 1655] Length = 372 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 219/345 (63%), Positives = 271/345 (78%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 28 SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 87 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 88 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 147 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+FTTGT +ADQ+ L+ Sbjct: 148 THAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLK 207 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ Sbjct: 208 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 267 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QI Sbjct: 268 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 327 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 328 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372 >gi|297538242|ref|YP_003674011.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301] gi|297257589|gb|ADI29434.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301] Length = 376 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 212/352 (60%), Positives = 270/352 (76%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + + T + + RVN DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV Sbjct: 25 IKSATAAANQPSHSGRVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVS 84 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WK L+DDERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQ Sbjct: 85 MSRDIAQWKDSTALSDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQ 144 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 FEEA+H+H +QYI+ SLGLDE E+FN Y+E+PSI AK ++ + + TL+ P+F TGT + Sbjct: 145 GFEEAIHTHAYQYIVESLGLDESEVFNAYQEIPSIKAKDDFLIPFINTLTDPAFKTGTAE 204 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 ADQE L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID Sbjct: 205 ADQELLRSLIVFACIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGID 264 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 VIN IK+ENPHLWT EF+++ +T++ + LE YA TMP+G +GLNA ++Y++FIA Sbjct: 265 VINTIKLENPHLWTAEFREEIKTLMQKGVELEYQYAEATMPRGVLGLNATMFKEYLRFIA 324 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+ L+ NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD Sbjct: 325 NRRCTQIGLDVLYPGATNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 376 >gi|187479453|ref|YP_787478.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella avium 197N] gi|115424040|emb|CAJ50593.1| ribonucleoside-diphosphate reductase beta chain [Bordetella avium 197N] Length = 394 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 210/351 (59%), Positives = 269/351 (76%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + + +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 44 AAPQSAADLGNTAQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINM 103 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 104 SRDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 163 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEA+H+H +QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +A Sbjct: 164 FEEAIHTHAYQYIVESLDLDESEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEA 223 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+ Sbjct: 224 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDL 283 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 IN IK+ENPHLWT EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIAN Sbjct: 284 INTIKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIAN 343 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RRC QIG+EPL+ ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 344 RRCQQIGIEPLYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 394 >gi|330815478|ref|YP_004359183.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia gladioli BSR3] gi|327367871|gb|AEA59227.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia gladioli BSR3] Length = 407 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 210/339 (61%), Positives = 266/339 (78%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 ++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG Sbjct: 69 QERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 128 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 129 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDEGE+FN Y E+ SI K + + + TL+ P+F TGT +ADQ+ L+ L VF Sbjct: 189 IVESLGLDEGEMFNAYHEITSIRDKDEFLIPFIHTLTDPAFVTGTPEADQKLLKSLIVFA 248 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW Sbjct: 249 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 308 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EF+ + R + A LE YA +TMP+G +GLNA + Y++FIANRRC QIGL+ L+ Sbjct: 309 TPEFRAEIRELFKHAVELEYRYAEDTMPRGVLGLNASMFKSYLRFIANRRCQQIGLDALY 368 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 369 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407 >gi|262280153|ref|ZP_06057938.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter calcoaceticus RUH2202] gi|262260504|gb|EEY79237.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter calcoaceticus RUH2202] Length = 427 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 221/346 (63%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW+ EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWSAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|300703002|ref|YP_003744604.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like [Ralstonia solanacearum CFBP2957] gi|299070665|emb|CBJ41960.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum CFBP2957] Length = 402 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 215/349 (61%), Positives = 263/349 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 54 NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 113 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 114 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 173 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + TL+ PSF TGT + DQ Sbjct: 174 EAIHTHAYQYIVESLGLDEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 233 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN Sbjct: 234 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 293 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRR Sbjct: 294 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRR 353 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGLEPLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 354 CQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402 >gi|262376783|ref|ZP_06070011.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter lwoffii SH145] gi|262308493|gb|EEY89628.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter lwoffii SH145] Length = 427 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 222/346 (64%), Positives = 281/346 (81%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQIL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENP LWT EFQ++ M+ E T+LEI YA +TMP+G +G+NA E+Y++FIANRR Sbjct: 322 KIENPGLWTTEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAGMMEEYLKFIANRRLA 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|299771426|ref|YP_003733452.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. DR1] gi|298701514|gb|ADI92079.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter sp. DR1] Length = 427 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 221/346 (63%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNLDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW+ EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPHLWSAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|207744360|ref|YP_002260752.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum IPO1609] gi|206595765|emb|CAQ62692.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum IPO1609] Length = 410 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 214/349 (61%), Positives = 263/349 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 62 NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 121 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 122 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 181 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ Sbjct: 182 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 241 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN Sbjct: 242 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 301 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRR Sbjct: 302 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRR 361 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGLEPLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 362 CQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 410 >gi|262369327|ref|ZP_06062655.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter johnsonii SH046] gi|262315395|gb|EEY96434.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter johnsonii SH046] Length = 427 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 221/346 (63%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFQTGTPENDQIL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENP LWT EFQ++ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 322 KIENPSLWTAEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLA 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|163854887|ref|YP_001629185.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella petrii DSM 12804] gi|163258615|emb|CAP40914.1| ribonucleoside-diphosphate reductase beta chain [Bordetella petrii] Length = 396 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 209/342 (61%), Positives = 268/342 (78%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 A RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ Sbjct: 55 DAAAHRVKVADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKN 114 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H Sbjct: 115 PNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHA 174 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +QYI+ SL LDE E+FN Y EVPSI AK + + + + ++ P+F TGT ++DQ+ L+ L Sbjct: 175 YQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIEAIADPTFHTGTPESDQKLLKSLI 234 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 VF + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN IK+ENP Sbjct: 235 VFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENP 294 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 HLWT EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANRRC QIG+E Sbjct: 295 HLWTPEFREEIRGLFQKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIE 354 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PL+ ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 355 PLYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 396 >gi|226945386|ref|YP_002800459.1| ribonucleotide-diphosphate reductase subunit beta [Azotobacter vinelandii DJ] gi|226720313|gb|ACO79484.1| Ribonucleoside-diphosphate reductase beta subunit [Azotobacter vinelandii DJ] Length = 416 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 214/347 (61%), Positives = 276/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP E+ M D+ Sbjct: 70 GLEDLEGAAARVRVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEINMNADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GLT+DER +IKRNLGFF++++SLVANN+ LAIYR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSADGLTEDERRIIKRNLGFFSTADSLVANNLALAIYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F TGT + D++ Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFDTGTPETDRQL 249 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQI 309 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 310 KIENPHLWDAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNATMMEDYLKFIANRRLS 369 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 370 QLGLPEQYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|186477386|ref|YP_001858856.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia phymatum STM815] gi|184193845|gb|ACC71810.1| Ribonucleoside-diphosphate reductase [Burkholderia phymatum STM815] Length = 407 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 215/339 (63%), Positives = 265/339 (78%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E RVNV DKR++N ++DVNQL+P KY WAWEKYLS C NHWMP E+ M D+ALWK NG Sbjct: 69 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLSGCANHWMPQEINMSRDIALWKDPNG 128 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 129 LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDEGE+FN Y EV SI K + + + TL+ P+F TGT +ADQ+ L+ L VF Sbjct: 189 IVESLGLDEGEIFNAYHEVQSIRDKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFA 248 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW Sbjct: 249 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 308 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EF+ + R + A LE YA +TMP+G +GLNA + Y++FI NRRC QIG++PL+ Sbjct: 309 TPEFRAEIREIFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGIDPLY 368 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 369 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407 >gi|255318309|ref|ZP_05359544.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SK82] gi|262379054|ref|ZP_06072210.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SH164] gi|255304621|gb|EET83803.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SK82] gi|262298511|gb|EEY86424.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter radioresistens SH164] Length = 427 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 223/346 (64%), Positives = 281/346 (81%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 82 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 141 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 142 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 201 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 202 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPENDQIL 261 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 262 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 321 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR + Sbjct: 322 KIENPHLWTAEFQQEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFICNRRLN 381 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 382 QLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427 >gi|254282900|ref|ZP_04957868.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR51-B] gi|219679103|gb|EED35452.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR51-B] Length = 421 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 215/347 (61%), Positives = 278/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M D+ Sbjct: 75 GLEELEMGAQRVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 134 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WKS +GLT+DER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQAFEEA Sbjct: 135 ATWKSSDGLTEDERRIVLRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQAFEEA 194 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEG +FNMYREVPS+ KA W+L +T +LS P+F TGT + DQ+ Sbjct: 195 IHTHAYQYCIESLGMDEGAVFNMYREVPSVARKATWSLSHTHSLSDPNFKTGTVETDQQL 254 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 255 LRNLVGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 314 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLWT EFQ++ M+ E T LEI YA +TMP+G +G+NA E+Y+QFI NRR + Sbjct: 315 KLENPHLWTAEFQEEVVQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFICNRRLN 374 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL + +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 375 QLGLSEQYPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 421 >gi|94312018|ref|YP_585228.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus metallidurans CH34] gi|93355870|gb|ABF09959.1| Ribonucleoside-diphosphate reductase beta subunit [Cupriavidus metallidurans CH34] Length = 395 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 212/349 (60%), Positives = 262/349 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 47 NNPNAAAAQSTRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 106 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 107 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 166 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ Sbjct: 167 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 226 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN Sbjct: 227 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 286 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRR Sbjct: 287 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRR 346 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL+ LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 347 CQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395 >gi|88705571|ref|ZP_01103281.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter litoralis KT71] gi|88700084|gb|EAQ97193.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter litoralis KT71] Length = 469 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 216/347 (62%), Positives = 278/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G RV++D+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M D+ Sbjct: 123 GLEELEMGASRVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 182 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WK+ GLTDDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFEEA Sbjct: 183 ATWKNPEGLTDDERRIVLRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFEEA 242 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +T LS P+F TGT ++DQ Sbjct: 243 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSISHTHELSDPNFRTGTLESDQTL 302 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 303 LRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 362 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENP LWT+EF+Q++ M+ E T LEI YA +TMP+G +G+NA E+Y+QFIANRR Sbjct: 363 KLENPQLWTEEFKQEAIQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIANRRLS 422 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 423 QIGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 469 >gi|82703584|ref|YP_413150.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosospira multiformis ATCC 25196] gi|82411649|gb|ABB75758.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC 25196] Length = 408 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 217/339 (64%), Positives = 272/339 (80%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RV+V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP E+ M D+ALWK NG Sbjct: 70 HRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEINMSRDIALWKDPNG 129 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QY Sbjct: 130 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHVTNPECRQYLLRQAFEEAIHTHAYQY 189 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDEGE+FN Y EV SI K + + + TL+ PSF TGT +ADQ+ L+ L VF Sbjct: 190 IVESLGLDEGEIFNAYHEVRSIREKDEFLIPFIDTLTDPSFRTGTLEADQKLLKSLIVFA 249 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDV+NQIK+ENPHLW Sbjct: 250 CIMEGLFFYVGFIQILALGRQNKMTGSAEQYQYILRDESMHCNFGIDVVNQIKMENPHLW 309 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 TKEF+ + ++ +A LE YA +TMP+G +GLNAP ++Y+++IANRRC QIGL+ L+ Sbjct: 310 TKEFRSEISALMQKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRYIANRRCQQIGLDILY 369 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 370 PGASNPFPWMSEMIDLKKEKNFFETRVTEYQTGGVLNWD 408 >gi|238026167|ref|YP_002910398.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia glumae BGR1] gi|237875361|gb|ACR27694.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia glumae BGR1] Length = 407 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 212/339 (62%), Positives = 268/339 (79%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 ++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG Sbjct: 69 QERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 128 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER +++RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 129 LTEDERRIVRRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDEGE+FN Y EV SI K + + + TL+ P+F TGT+DADQ+ L+ L VF Sbjct: 189 IVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIHTLTDPAFVTGTQDADQKLLKSLIVFA 248 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW Sbjct: 249 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 308 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EF+ + R + A LE YA +TMP+G +GLNA + Y++FIANRRC QIGL+PL+ Sbjct: 309 TPEFRAEIRELFKRAVELEYRYAEDTMPRGVLGLNAAMFKSYLRFIANRRCQQIGLDPLY 368 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 369 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407 >gi|110833571|ref|YP_692430.1| ribonucleotide-diphosphate reductase subunit beta [Alcanivorax borkumensis SK2] gi|110646682|emb|CAL16158.1| ribonucleoside reductase, beta subunit [Alcanivorax borkumensis SK2] Length = 430 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 220/347 (63%), Positives = 278/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G++ ++ RV VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M DL Sbjct: 84 GVAELEGAAGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADL 143 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK +GLTDDER ++KRNLGFFA+++SLVANN+VLAIYR ++NPECRQY+LRQ+FEEA Sbjct: 144 ALWKKADGLTDDERRIVKRNLGFFATADSLVANNLVLAIYRLITNPECRQYILRQSFEEA 203 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY+E+PS+ KA W +QYT+ LS P FTTGT + D+ Sbjct: 204 IHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTPETDKAL 263 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVINQI Sbjct: 264 LENLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGIDVINQI 323 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLW + + K+ M+ E T LEI YA +TMP+G +G+NA E+Y+QFIANRR Sbjct: 324 KLENPHLWDAQMRDKATQMILEGTELEIQYARDTMPRGVLGMNAAMMEEYLQFIANRRLA 383 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL FK NPFPWMSE++DL+KEKNFFETRVTEYQ G L W+ Sbjct: 384 QLGLPEQFKGVNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 430 >gi|300784783|ref|YP_003765074.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis mediterranei U32] gi|299794297|gb|ADJ44672.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis mediterranei U32] Length = 357 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 261/351 (74%), Positives = 297/351 (84%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + TGL I+ G R+NVDDKRM+NAR+DVNQLLP+KY WAWEKYL+ CNNHWMPTEV M Sbjct: 7 TDATGLGEIEVGAARINVDDKRMINARADVNQLLPMKYKWAWEKYLAGCNNHWMPTEVAM 66 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQA Sbjct: 67 QADIALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQA 126 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEAVH+HTFQYI SLGL EGELFNMYREVPSI+ K WAL+YTQ L +P F TGT +A Sbjct: 127 FEEAVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEA 186 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID Sbjct: 187 DQAFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDC 246 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQIKIENPHLWT+EFQ + R ML EA LE+ YA +TMP+G +GL+A CEQYM F+ + Sbjct: 247 INQIKIENPHLWTEEFQAEVRGMLKEACELEVKYARDTMPRGMLGLSAQLCEQYMHFVTD 306 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RR QIGL P+F TENPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 307 RRAQQIGLAPIFGETENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 357 >gi|53720599|ref|YP_109585.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia pseudomallei K96243] gi|53726102|ref|YP_104055.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia mallei ATCC 23344] gi|52211013|emb|CAH37001.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia pseudomallei K96243] gi|52429525|gb|AAU50118.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia mallei ATCC 23344] Length = 350 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 222/352 (63%), Positives = 274/352 (77%), Gaps = 2/352 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MA N S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 1 MAPNA--SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 58 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 59 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 118 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+FTTGT + Sbjct: 119 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLE 178 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 ADQ+ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID Sbjct: 179 ADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGID 238 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+ Sbjct: 239 LINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFIS 298 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 299 NRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 350 >gi|114321252|ref|YP_742935.1| ribonucleotide-diphosphate reductase subunit beta [Alkalilimnicola ehrlichii MLHE-1] gi|114227646|gb|ABI57445.1| Ribonucleoside-diphosphate reductase [Alkalilimnicola ehrlichii MLHE-1] Length = 354 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 257/350 (73%), Positives = 296/350 (84%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 N TGL I+AG RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEVPM Sbjct: 5 NATGLEAIEAGAHRVSVDEKRMINCRADVNQLLPLKYEWAWEKYLAGCNNHWMPTEVPMG 64 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALW+ +GLT DERLMIKRNLGFFA+SESLVANNIVLAIYRH++NPECRQYLLRQAF Sbjct: 65 ADIALWRHPDGLTADERLMIKRNLGFFATSESLVANNIVLAIYRHITNPECRQYLLRQAF 124 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEA+H+HTFQYI+ SL LDEGELFNMYREVPSIT KA WAL+YTQ L S F T +++ Sbjct: 125 EEAIHTHTFQYIVESLDLDEGELFNMYREVPSITDKAAWALKYTQNLESGHFDTTSREGA 184 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 Q FL+DL FYVVFEGMWFYTGFAQILSLGR NKM GIAE YQYI+RDES+HLNFGIDVI Sbjct: 185 QSFLRDLVAFYVVFEGMWFYTGFAQILSLGRQNKMTGIAEMYQYILRDESIHLNFGIDVI 244 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 NQI+ ENP LWT +F+Q+ TML EA LE+AYA +TMP+G +GLNA CE+YM FI NR Sbjct: 245 NQIRHENPELWTNDFEQEVLTMLREAVELEVAYARDTMPRGMLGLNADMCEEYMHFITNR 304 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RC Q+GL+ L+ NPFPWMSEV+DL+KEKNFFETRVT+Y+ G L+WD Sbjct: 305 RCAQLGLKELYPGATNPFPWMSEVMDLQKEKNFFETRVTDYRTGGALQWD 354 >gi|119504228|ref|ZP_01626308.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2080] gi|119459736|gb|EAW40831.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2080] Length = 419 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 221/347 (63%), Positives = 279/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M D+ Sbjct: 73 GLEELEMGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTADV 132 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WK +GL+DDER +I R+LG+F++++SLVANN+VLAIYR ++NPECRQYLLRQAFEEA Sbjct: 133 ATWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYLLRQAFEEA 192 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ AKA W+L T +LS P+F TGT + DQE Sbjct: 193 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKATWSLGKTHSLSDPNFRTGTLETDQEL 252 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 253 LRNLIGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 312 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENP LWT EFQQ++ M+ E T LEIAYA +TMP+G +G+NA E+Y+QFI NRR + Sbjct: 313 KLENPLLWTPEFQQEAIQMILEGTELEIAYARDTMPRGVLGMNAAMMEEYLQFICNRRLN 372 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 373 QVGLPEQFPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 419 >gi|167564160|ref|ZP_02357076.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia oklahomensis EO147] Length = 369 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 217/345 (62%), Positives = 269/345 (77%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 25 SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 84 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 85 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 144 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ Sbjct: 145 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLK 204 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ Sbjct: 205 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 264 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QI Sbjct: 265 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 324 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 325 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 369 >gi|167580513|ref|ZP_02373387.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis TXDOH] gi|167618621|ref|ZP_02387252.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis Bt4] gi|257137870|ref|ZP_05586132.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis E264] Length = 350 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 221/352 (62%), Positives = 273/352 (77%), Gaps = 2/352 (0%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MA N S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ Sbjct: 1 MAPNA--SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEIN 58 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQ Sbjct: 59 MSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQ 118 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT + Sbjct: 119 AFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLE 178 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 ADQ+ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID Sbjct: 179 ADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGID 238 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+ Sbjct: 239 LINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFIS 298 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 299 NRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 350 >gi|325121074|gb|ADY80597.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter calcoaceticus PHEA-2] Length = 370 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 25 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 84 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 85 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 144 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+F TGT + DQ Sbjct: 145 IHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPENDQRL 204 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 205 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 264 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 265 KIENPHLWTAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 324 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 325 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 370 >gi|330811278|ref|YP_004355740.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379386|gb|AEA70736.1| Ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 415 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 216/349 (61%), Positives = 276/349 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D D+ Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTPDTDK 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|83746810|ref|ZP_00943858.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia solanacearum UW551] gi|207721465|ref|YP_002251905.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum MolK2] gi|83726579|gb|EAP73709.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia solanacearum UW551] gi|206586625|emb|CAQ17211.1| transmembrane ribonucleoside reductase (small chain) protein [Ralstonia solanacearum MolK2] Length = 402 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 214/349 (61%), Positives = 263/349 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 54 NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 113 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 114 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 173 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ Sbjct: 174 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 233 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN Sbjct: 234 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 293 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRR Sbjct: 294 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRR 353 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGLEPLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 354 CQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402 >gi|332526550|ref|ZP_08402662.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax benzoatilyticus JA2] gi|332110818|gb|EGJ10995.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax benzoatilyticus JA2] Length = 385 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 209/351 (59%), Positives = 263/351 (74%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A+ A +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M Sbjct: 35 ASPVSRPAATAHTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 94 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 95 SRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 154 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I K + + + + P+F+TGT +A Sbjct: 155 FEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRDKDEFLIPFIDAIMDPAFSTGTPEA 214 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+ Sbjct: 215 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 274 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQIK+ENP LWT F+ + R + A LE YA +TMP+G +G+NA + Y+++IAN Sbjct: 275 INQIKLENPQLWTPAFKAEIRALFERAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIAN 334 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RR QIGLE LF ENPFPWMSE+IDLKKE+NFFETRV +YQ G L WD Sbjct: 335 RRATQIGLEALFPNEENPFPWMSEMIDLKKERNFFETRVIDYQSGGALSWD 385 >gi|167574685|ref|ZP_02367559.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia oklahomensis C6786] Length = 369 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 217/345 (62%), Positives = 268/345 (77%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 25 SAAVASEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 84 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 85 WKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 144 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT ADQ+ L+ Sbjct: 145 THAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLVADQKLLK 204 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ Sbjct: 205 SLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKL 264 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QI Sbjct: 265 ENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQI 324 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 325 GLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 369 >gi|315122301|ref|YP_004062790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495703|gb|ADR52302.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 372 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 276/352 (78%), Positives = 313/352 (88%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A+ GL PIQ G R++ D+KRM+NARSDVNQLLPLKY WAWEKYL CNNHWMPTEV Sbjct: 21 IADTVGLGPIQKGSARIHADEKRMINARSDVNQLLPLKYKWAWEKYLFGCNNHWMPTEVS 80 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 MQ D+ALW+SKNGLT+DER MIKRNLGFFA+SESLVANNIVLAIYRH+SNPECRQYLLRQ Sbjct: 81 MQADIALWQSKNGLTNDERHMIKRNLGFFATSESLVANNIVLAIYRHISNPECRQYLLRQ 140 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEAVH+HTFQYI+ SL L+EGELFNMYRE+PSIT KA+WAL+YT+ L+S SF+TGT D Sbjct: 141 AFEEAVHTHTFQYIVESLSLNEGELFNMYREIPSITNKASWALRYTKNLNSTSFSTGTDD 200 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ+FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYIMRDES+HLNFGID Sbjct: 201 RDQDFLRDLIAFYVVFEGMWFYTGFAQILSLGRYNKMVGIAEQYQYIMRDESVHLNFGID 260 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIKIENPHLWT++FQQ+ R ML EA LLE+AY +TMPK F+G+NA CE+YM FI Sbjct: 261 MINQIKIENPHLWTEDFQQEVRKMLQEAALLEVAYGKDTMPKPFLGINANLCEKYMYFIT 320 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRC QIGL+P+F+ TENPFPWMSEVIDL+KEKNFFETRVTEYQ+G L WD Sbjct: 321 NRRCTQIGLDPVFEKTENPFPWMSEVIDLQKEKNFFETRVTEYQKGTSLDWD 372 >gi|73542624|ref|YP_297144.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia eutropha JMP134] gi|72120037|gb|AAZ62300.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134] Length = 394 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 211/349 (60%), Positives = 261/349 (74%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 46 NNPNAAAAQSNRRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 105 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+A WK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 106 DIATWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 165 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ Sbjct: 166 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 225 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN Sbjct: 226 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 285 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRR Sbjct: 286 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRR 345 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL+ LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 346 CQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 394 >gi|113869188|ref|YP_727677.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia eutropha H16] gi|113527964|emb|CAJ94309.1| Ribonucleoside-diphosphate reductase beta subunit [Ralstonia eutropha H16] Length = 395 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 211/345 (61%), Positives = 261/345 (75%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL Sbjct: 51 AAAAQSNRRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIAL 110 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H Sbjct: 111 WKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIH 170 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ Sbjct: 171 THAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLK 230 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ Sbjct: 231 SLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKL 290 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QI Sbjct: 291 ENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQI 350 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL+ LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 351 GLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395 >gi|92112799|ref|YP_572727.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter salexigens DSM 3043] gi|91795889|gb|ABE58028.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens DSM 3043] Length = 420 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 220/349 (63%), Positives = 284/349 (81%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL ++ G R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL NHWMP EV M Sbjct: 72 AAGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNA 131 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS +GLT+DER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFE Sbjct: 132 DIALWKSNDGLTEDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFE 191 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY + SLG+DEGE+FNMYREVPS+ AK+ W+L++TQ+L+ P F TGT + DQ Sbjct: 192 EAIHTHAYQYCVESLGMDEGEVFNMYREVPSVAAKSAWSLKHTQSLARPDFHTGTPETDQ 251 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D+IN Sbjct: 252 ELLRNLIAFYCVTEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDMIN 311 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLWT EFQ + M+ E T LEIAYA ++MP+G +G+NA E+Y+ FI NRR Sbjct: 312 QIKIENPHLWTPEFQDEVTQMIIEGTELEIAYARDSMPRGVLGMNAAIMEEYLHFICNRR 371 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + ENPFPWMSE+IDL+KEKNFFETRVTEYQ G L WD Sbjct: 372 LAQIGLKEQYPGAENPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 420 >gi|254483523|ref|ZP_05096750.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma proteobacterium HTCC2148] gi|214036244|gb|EEB76924.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma proteobacterium HTCC2148] Length = 425 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 219/352 (62%), Positives = 283/352 (80%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M GL ++ G RV+VD+K M+N R+D+NQL+PLKY WAW+KYL C NHWMP E+ Sbjct: 74 MDVAAGLEELEMGASRVSVDEKAMINCRADLNQLVPLKYDWAWQKYLDGCANHWMPQEIN 133 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WKS +GL+DDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ Sbjct: 134 MTADVATWKSADGLSDDERRIVMRSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQ 193 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ AKA+W+L +T +LS P+F TGT++ Sbjct: 194 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKASWSLSHTHSLSDPTFNTGTQE 253 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQE L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID Sbjct: 254 TDQELLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 313 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 VINQIK+ENP+LWT+ FQQ+ M+ E T +EI YA +TMP+G +G+NA E+Y+ FIA Sbjct: 314 VINQIKLENPNLWTETFQQEVIQMILEGTEIEIQYARDTMPRGVLGMNAAIMEEYLHFIA 373 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRR Q+GL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 374 NRRLSQLGLPEQFAGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 425 >gi|158341282|ref|YP_001522354.1| ribonucleotide-diphosphate reductase subunit beta [Acaryochloris marina MBIC11017] gi|158311523|gb|ABW33134.1| ribonucleoside-diphosphate reductase, beta subunit [Acaryochloris marina MBIC11017] Length = 384 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 206/344 (59%), Positives = 264/344 (76%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P +R+NV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+ALW Sbjct: 41 PETQPPRRINVADKRIINGQTDVNQLVPFKYQWAWDKYLAGCANHWMPQEINMSRDIALW 100 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K+ +GLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+ Sbjct: 101 KTTDGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHT 160 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 H +QYI+ SLGLDEGE+FN YREV I K + + + +TL+ P+F TGT + DQ+ L+ Sbjct: 161 HAYQYIVESLGLDEGEIFNAYREVDCIREKDEFLIPFVETLTDPTFETGTPENDQKLLKS 220 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L F + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID++N IK E Sbjct: 221 LIAFSCLMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLVNAIKQE 280 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NPHLWT EF ++ R + A LE YA +TMP+G +GLNA + Y+++IANRR QIG Sbjct: 281 NPHLWTPEFCEEIRDLFKRAVELEYRYAEDTMPRGVLGLNASMFKSYLRYIANRRSQQIG 340 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+P+F ENPFPWMSE++DLKKE+NFFETRV EYQ G L WD Sbjct: 341 LDPIFASEENPFPWMSEMVDLKKERNFFETRVLEYQTGGALSWD 384 >gi|332530699|ref|ZP_08406630.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella gracilis ATCC 19624] gi|332039867|gb|EGI76262.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella gracilis ATCC 19624] Length = 399 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 209/357 (58%), Positives = 263/357 (73%), Gaps = 5/357 (1%) Query: 1 MANNTGLSPIQA-----GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55 +A+ +P A G R+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWM Sbjct: 43 LADTAIAAPQSASHAPSGTHRIKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWM 102 Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P EV M D+ALWK NGL++DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ Sbjct: 103 PQEVNMNRDIALWKDPNGLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQ 162 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT 175 +LLRQAFEEA+H+H +QYI+ SLGLDE E+F+ Y EV SI K + L + + P+F Sbjct: 163 FLLRQAFEEAIHTHAYQYIVESLGLDESEIFSAYLEVQSIRDKDEFLLPFINAIMDPNFH 222 Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 TGT + DQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H Sbjct: 223 TGTLETDQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHC 282 Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295 NFGID+INQIK+ENP LWT EF+ + R + +A LE YA +TMP+G +G+NA + Y Sbjct: 283 NFGIDLINQIKLENPQLWTPEFKAEIRGLFEKAVELEYRYAEDTMPRGVLGMNASMFKGY 342 Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +++IANRR QIGLE LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 343 LRYIANRRATQIGLEALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 399 >gi|148546452|ref|YP_001266554.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida F1] gi|148510510|gb|ABQ77370.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida F1] Length = 415 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 214/349 (61%), Positives = 276/349 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT + D+ Sbjct: 187 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 307 QIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 367 LTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|324998522|ref|ZP_08119634.1| ribonucleoside-diphosphate reductase beta chain [Pseudonocardia sp. P1] Length = 358 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 254/350 (72%), Positives = 298/350 (85%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + TGL I G ++ DDKRM+NAR+DVNQLLPLKY WAW+KYL+ C+NHWMPTEV MQ Sbjct: 9 DTTGLGEIDRGAAPIDADDKRMINARADVNQLLPLKYHWAWDKYLAGCSNHWMPTEVAMQ 68 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALW+S++GLTDDERLM+ RNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQ+F Sbjct: 69 ADIALWRSRDGLTDDERLMLTRNLGFFATAESLVANNVVLAVYRHLTNPECRQYLLRQSF 128 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEAVH+HTFQY+ SLGLDEGELFN YR+VPSIT K WAL+YTQ LS P F TGT + D Sbjct: 129 EEAVHTHTFQYVCESLGLDEGELFNAYRQVPSITDKDAWALRYTQALSDPDFCTGTPEND 188 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 + FL+DL FYVVFEGMWFYTGFAQIL+LGR NKMVG+AEQYQYI+RDES+HLNFGID I Sbjct: 189 RAFLRDLVAFYVVFEGMWFYTGFAQILALGRRNKMVGVAEQYQYILRDESIHLNFGIDCI 248 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 NQIKIENPHLWT+EF + R MLHEA LE+AYA +TMP+G +GL A SCEQY++FI +R Sbjct: 249 NQIKIENPHLWTEEFAAEIRAMLHEACELEVAYARDTMPRGMLGLTAESCEQYLRFITDR 308 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 R QIGL PLF +NPFPWMSE +DL+KEKNFFETRVTEY+ G L+WD Sbjct: 309 RAEQIGLAPLFGQADNPFPWMSEAMDLRKEKNFFETRVTEYRTGGSLEWD 358 >gi|88812072|ref|ZP_01127324.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus mobilis Nb-231] gi|88790576|gb|EAR21691.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus mobilis Nb-231] Length = 370 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 220/348 (63%), Positives = 278/348 (79%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL + G R+ VDDKR++N R+D+NQL+P KY WAWEKYL NHWMP E+PM D Sbjct: 23 TGLDAPERGAARIRVDDKRIINCRADLNQLVPFKYHWAWEKYLQGSANHWMPQEIPMGRD 82 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + LWK ++GLT+DER ++KR+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 83 IELWKRRDGLTEDERTIVKRSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 142 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY+I SL +DEGE+FNMYREVPS+ KA WAL +T++L P F TGT ADQ Sbjct: 143 ALHTHAYQYVIESLAMDEGEVFNMYREVPSVARKAEWALPFTESLGDPDFRTGTPAADQR 202 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+DL FYV FEG++FYTGFAQ+L++GR NKM G AEQ+QYI+RDES+HLNFGIDVINQ Sbjct: 203 LLRDLIAFYVCFEGIFFYTGFAQVLAMGRRNKMTGTAEQFQYILRDESIHLNFGIDVINQ 262 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK ENPHLWT EFQ ++ + E+ LE+ YA +T+P+G +GLNA E+Y++FI NRR Sbjct: 263 IKQENPHLWTAEFQATAQRTILESMALEVDYARDTLPRGVLGLNAAMIEEYLRFITNRRL 322 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL F ENP PWMSE++DLKKEKNFFETRVTEY+ G L W+ Sbjct: 323 AQIGLTEAFPGAENPLPWMSELVDLKKEKNFFETRVTEYRTGGALSWE 370 >gi|70731866|ref|YP_261608.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens Pf-5] gi|68346165|gb|AAY93771.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Pseudomonas fluorescens Pf-5] Length = 415 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 216/349 (61%), Positives = 276/349 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D D+ Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|302525965|ref|ZP_07278307.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. AA4] gi|302434860|gb|EFL06676.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. AA4] Length = 357 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 260/351 (74%), Positives = 297/351 (84%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + TGL I+ G R+NVDDKRM+NAR+DVNQLLP+KY WAW+KYL+ACNNHWMPTEV M Sbjct: 7 TDATGLGEIEVGAARINVDDKRMINARADVNQLLPMKYRWAWDKYLAACNNHWMPTEVAM 66 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQA Sbjct: 67 QADIALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQA 126 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEAVH+HTFQYI SLGL EGELFNMYREVPSI+ K WAL+YTQ L +P F TGT +A Sbjct: 127 FEEAVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEA 186 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID Sbjct: 187 DQAFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDC 246 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQIKIENPHLWT+EFQ + R ML EA LE+ YA +TMP+G +GL+A CEQYM FI + Sbjct: 247 INQIKIENPHLWTEEFQAEVRGMLQEACELEVKYARDTMPRGMLGLSADLCEQYMHFITD 306 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RR QIGL P++ ENPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 307 RRAQQIGLPPIYGENENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 357 >gi|297563527|ref|YP_003682501.1| ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847975|gb|ADH69995.1| Ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 360 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 266/351 (75%), Positives = 302/351 (86%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + +GL I+ +RVNVDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV M Sbjct: 10 SATSGLGEIERDAERVNVDDKAMINARADVNQLLPLKYTWAWEKYLAGCNNHWMPTEVAM 69 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 Q D+ALWKS++GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR L+NPECRQYLLRQA Sbjct: 70 QADIALWKSRDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLTNPECRQYLLRQA 129 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEAVH+HTFQYI SLGLDEGELFNMYREVPSITAK WAL+YTQ L +P F TGT +A Sbjct: 130 FEEAVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALKYTQNLENPEFRTGTPEA 189 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV Sbjct: 190 DQAFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 249 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQIKIENPHLW++EFQ + R ML EA LE+AY ETMP+G +GLNA CE+YM FI + Sbjct: 250 INQIKIENPHLWSEEFQAEVRQMLTEACELEVAYGRETMPRGVLGLNAELCEKYMHFITD 309 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RR QIGL P+F TENPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 310 RRAEQIGLAPIFGETENPFPWMSEMMDLQKEKNFFETRVIEYQTGGGLDWD 360 >gi|89902117|ref|YP_524588.1| ribonucleotide-diphosphate reductase subunit beta [Rhodoferax ferrireducens T118] gi|89346854|gb|ABD71057.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens T118] Length = 400 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 209/345 (60%), Positives = 264/345 (76%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + +RVN DKR++N ++DVNQL+P KY WAWEKYLS+C NHWMP EV M D+AL Sbjct: 56 AAVSISPRRVNAADKRIINGKTDVNQLVPFKYKWAWEKYLSSCANHWMPQEVNMTRDIAL 115 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H Sbjct: 116 WKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 175 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P+F TGT +ADQ L+ Sbjct: 176 THAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPAFKTGTHEADQTLLK 235 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GFAQIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ Sbjct: 236 SLIVFACLMEGLFFYVGFAQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKL 295 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENP LWT EF+ + + + +A LE YA +TMP+G +G+NA + Y+++IANRR QI Sbjct: 296 ENPQLWTSEFKAEIKALFEQAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQI 355 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GLE LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 356 GLETLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 400 >gi|253997287|ref|YP_003049351.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8] gi|253983966|gb|ACT48824.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8] Length = 377 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 209/338 (61%), Positives = 260/338 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 RVN DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV M D+A WK L Sbjct: 40 GRVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVSMSRDIAQWKDSTAL 99 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 TDDERL++KRNLGFF +++SL ANNIVL YRH++ PE RQYLLRQ FEEA+H+H +QYI Sbjct: 100 TDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPEARQYLLRQGFEEAIHTHAYQYI 159 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDE E+FN Y+EV SI K ++ + + TL++P F TGT +ADQ+ L+ L VF Sbjct: 160 VESLGLDESEVFNAYQEVASIKDKDDFLIPFINTLTNPEFKTGTAEADQQLLRSLIVFAC 219 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVIN IK+ENPHLWT Sbjct: 220 IMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDVINTIKLENPHLWT 279 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+ + + ++ LE YA TMP+G +GLNA ++Y++FIANRRC QIGL+ L++ Sbjct: 280 AEFRDEIKGLIQHGVELEYRYAEATMPRGVLGLNATMFKEYLRFIANRRCQQIGLDVLYQ 339 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 340 GATNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 377 >gi|332286774|ref|YP_004418685.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp. T7-7] gi|330430727|gb|AEC22061.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp. T7-7] Length = 387 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 209/340 (61%), Positives = 263/340 (77%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D++LWK+ N Sbjct: 48 GSGRVRAADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDISLWKNPN 107 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +Q Sbjct: 108 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 167 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI+ SL LDE E+FN Y EVPSI AK + + + ++ P F TGT +ADQ L+ L VF Sbjct: 168 YIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPHFQTGTPEADQTLLKSLIVF 227 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN IK+ENPHL Sbjct: 228 ACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPHL 287 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 WT EF+++ R + +A LE AYA +TMP+G +GLNA + Y++FIANRRC QIGLEPL Sbjct: 288 WTAEFREELRELFKKAVDLEYAYAEDTMPRGVLGLNASMFKSYLRFIANRRCQQIGLEPL 347 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 F ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 348 FGQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGALSWE 387 >gi|254784923|ref|YP_003072351.1| ribonucleotide-diphosphate reductase subunit beta [Teredinibacter turnerae T7901] gi|237687536|gb|ACR14800.1| ribonucleoside-diphosphate reductase [Teredinibacter turnerae T7901] Length = 453 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 218/346 (63%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 108 GLEELEMGAARIEVDDKRMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMTADV 167 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A+WKS+ GL+ DER ++ R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQAFEEA Sbjct: 168 AIWKSEEGLSADERKIVMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQAFEEA 227 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P F TGT +ADQE Sbjct: 228 IHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSITHTQGISDPQFHTGTPEADQEL 287 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FYV+ EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 288 LRNLIGFYVITEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVINQI 347 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLWT+ FQQ+ + M+ E T LEI YA +TMP+G +G+NA E+Y+ FIANRR Sbjct: 348 KLENPHLWTESFQQEVKQMVLEGTELEIGYARDTMPRGVLGMNAAIMEEYLHFIANRRLA 407 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL+ + +NPFPWMSE++DL+KEKNFFETRV EYQ G L W Sbjct: 408 QLGLKEAYPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSW 453 >gi|254516739|ref|ZP_05128798.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR5-3] gi|219675162|gb|EED31529.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium NOR5-3] Length = 441 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 219/349 (62%), Positives = 279/349 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL ++ G RV++D+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV M Sbjct: 93 AAGLEELEMGAARVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVNMTA 152 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+A WK+ GLTDDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFE Sbjct: 153 DVATWKNPEGLTDDERRIILRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQAFE 212 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W+L +T LS P+F TGT ++DQ Sbjct: 213 EAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSLSHTHELSDPNFNTGTMESDQ 272 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 273 TLLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 332 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT+EF+Q++ M+ E T LEI YA +TMP+G +G+NA E+Y+QFIANRR Sbjct: 333 QIKLENPHLWTEEFKQEAIQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIANRR 392 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 393 LSQIGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 441 >gi|256822964|ref|YP_003146927.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM 16069] gi|256796503|gb|ACV27159.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM 16069] Length = 421 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 218/347 (62%), Positives = 280/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G R+ VDDK+M+N R+D+NQL+P KY WAW+KYL C+NHWMP E+ M D+ Sbjct: 75 GLEELEMGAARIEVDDKKMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEINMTKDV 134 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 A WK NGLTDDER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQAFEEA Sbjct: 135 ATWKDPNGLTDDERKIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQAFEEA 194 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY + SLG+DE E+FNMYREVPSI KA W++++TQ +S+P+F TGT +ADQE Sbjct: 195 IHTHAYQYCVESLGMDEAEVFNMYREVPSIAKKAAWSIKHTQGISNPTFKTGTDEADQEL 254 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D+INQI Sbjct: 255 LRNLIGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDIINQI 314 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLWT EF+Q+ M+ E T LEI YA +TMP+G +G+NA E+Y+QFI NRR Sbjct: 315 KLENPHLWTAEFKQEVLQMILEGTQLEIEYARDTMPRGVLGMNAGMMEEYLQFICNRRLA 374 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL FK NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 375 QLGLPEQFKNVSNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 421 >gi|126640804|ref|YP_001083788.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ATCC 17978] gi|322506921|gb|ADX02375.1| nrdB [Acinetobacter baumannii 1656-2] gi|323516789|gb|ADX91170.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii TCDC-AB0715] Length = 361 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 222/346 (64%), Positives = 280/346 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 16 GLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVNMNHDI 75 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQAFEEA Sbjct: 76 ALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQAFEEA 135 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT + DQ Sbjct: 136 IHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPENDQRL 195 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 196 LRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGIDMINQI 255 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI NRR Sbjct: 256 KIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFICNRRLS 315 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W Sbjct: 316 QLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 361 >gi|54294662|ref|YP_127077.1| ribonucleotide-diphosphate reductase subunit beta [Legionella pneumophila str. Lens] gi|53754494|emb|CAH15978.1| hypothetical protein lpl1739 [Legionella pneumophila str. Lens] Length = 367 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 225/349 (64%), Positives = 282/349 (80%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M Sbjct: 17 ATGLEALEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 76 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE Sbjct: 77 DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 136 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +F TGT + DQ Sbjct: 137 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 196 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN Sbjct: 197 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 256 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLWT EF+ + ++ E LE YA +TMP G +G+NA E+Y+ FIANRR Sbjct: 257 QIKIENPHLWTPEFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 316 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 317 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365 >gi|121595925|ref|YP_987821.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax sp. JS42] gi|222112113|ref|YP_002554377.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax ebreus TPSY] gi|120608005|gb|ABM43745.1| Ribonucleoside-diphosphate reductase [Acidovorax sp. JS42] gi|221731557|gb|ACM34377.1| Ribonucleoside-diphosphate reductase [Acidovorax ebreus TPSY] Length = 396 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 207/351 (58%), Positives = 263/351 (74%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + +RV+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M Sbjct: 46 TRTAPTASAAPQHRRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 105 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 106 TRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 165 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI K + + + + + P FTTGT ++ Sbjct: 166 FEEAIHTHAYQYIVESLGLDEGEIFNAYNEVQSIRDKDEFLIPFIEAIMDPRFTTGTPES 225 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+ Sbjct: 226 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 285 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQ+K+ENPHLWT EF+ + + + +A LE YA +TMP+G +G+NA + Y+++IAN Sbjct: 286 INQLKLENPHLWTAEFKDEIKALFIKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIAN 345 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RR QIGLE LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 346 RRATQIGLEALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 396 >gi|167586060|ref|ZP_02378448.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia ubonensis Bu] Length = 403 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 213/337 (63%), Positives = 266/337 (78%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGLT Sbjct: 67 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 126 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 127 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 186 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ L VF + Sbjct: 187 ESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFACI 246 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLWT Sbjct: 247 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 306 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+PL+ Sbjct: 307 EFRAEIRELFKQAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLYPN 366 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 367 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403 >gi|124268397|ref|YP_001022401.1| ribonucleotide-diphosphate reductase subunit beta [Methylibium petroleiphilum PM1] gi|124261172|gb|ABM96166.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum PM1] Length = 403 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 208/343 (60%), Positives = 260/343 (75%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 AG +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+A WK Sbjct: 61 AAAGTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWK 120 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 NGL++DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H Sbjct: 121 DPNGLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTH 180 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 +QYI+ SLGLDE E+FN Y EV SI K + + + + P+F TGT + D+ L+ L Sbjct: 181 AYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIGAIMDPNFHTGTLENDRTLLKSL 240 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+EN Sbjct: 241 IVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLEN 300 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 P LWT EF+ + + + +A LE YA +TMP+G +GLNA + Y+++IANRR QIGL Sbjct: 301 PQLWTAEFKAEIKALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGL 360 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 E LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 361 EELFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 403 >gi|17547523|ref|NP_520925.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia solanacearum GMI1000] gi|17429827|emb|CAD16511.1| putative transmembrane ribonucleoside reductase (small chain) oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 400 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 211/349 (60%), Positives = 262/349 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 52 NNPNAAAAQSSRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 111 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 112 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 171 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ Sbjct: 172 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 231 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN Sbjct: 232 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 291 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRR Sbjct: 292 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRR 351 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL+ LF +NPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 352 CQQIGLDALFPNEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 400 >gi|313200886|ref|YP_004039544.1| ribonucleoside-diphosphate reductase [Methylovorus sp. MP688] gi|312440202|gb|ADQ84308.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. MP688] Length = 381 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 203/341 (59%), Positives = 263/341 (77%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 + RV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+A WK Sbjct: 41 SATGRVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDS 100 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 + LT+DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H + Sbjct: 101 SALTEDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAY 160 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 QYI+ SLGLDE E+FN Y+EV SI K ++ + + TL+ P F TGT ADQ+ L+ L V Sbjct: 161 QYIVESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIV 220 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K+ENPH Sbjct: 221 FACIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDLINTLKLENPH 280 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 LWT EF+++ + ++ +A LE YA +TMP+G +GLNA ++Y++FIANRR QIG++ Sbjct: 281 LWTPEFREEIKRLMQQAVELEYRYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGIDA 340 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L+ NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD Sbjct: 341 LYPGASNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 381 >gi|299065648|emb|CBJ36820.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum CMR15] Length = 398 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 211/349 (60%), Positives = 262/349 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 50 NNPNAAAAQSSRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 109 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 110 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 169 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ Sbjct: 170 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 229 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN Sbjct: 230 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 289 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRR Sbjct: 290 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRR 349 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL+ LF +NPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 350 CQQIGLDALFPNEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 398 >gi|319791701|ref|YP_004153341.1| ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS] gi|315594164|gb|ADU35230.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS] Length = 411 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 206/338 (60%), Positives = 256/338 (75%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL Sbjct: 74 QRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 133 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 134 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 193 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDE E+FN Y EV SI K + L + +S P F TGT + DQ L+ L VF Sbjct: 194 VESLGLDESEIFNAYNEVQSIREKDQFLLPFIDAISDPHFKTGTHETDQTLLKSLIVFAC 253 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT Sbjct: 254 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWT 313 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+ + + + A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 314 PEFKAEIKDLFMRAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFP 373 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 374 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 411 >gi|254496936|ref|ZP_05109775.1| ribonucleotide-diphosphate reductase subunit beta [Legionella drancourtii LLAP12] gi|254353845|gb|EET12541.1| ribonucleotide-diphosphate reductase subunit beta [Legionella drancourtii LLAP12] Length = 369 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 227/352 (64%), Positives = 283/352 (80%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + TG I+ G R++VDDKR++N R+D+NQL+P KY WAW+KYLSAC NHWMP E+ Sbjct: 13 IVGATGYESIEMGAARIHVDDKRIINCRADLNQLVPFKYTWAWDKYLSACANHWMPNEIS 72 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLTDDERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ Sbjct: 73 MSADVALWKDPNGLTDDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 132 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QY+I SLGLDE E+FNMYRE+PS+ KA WAL YTQ+L SF TGT + Sbjct: 133 AFEEALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLGDESFHTGTIE 192 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ L+DL FYV+FEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGID Sbjct: 193 NDQRLLRDLIAFYVIFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGID 252 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 VINQIKIENPHLWT EF+++ ++ + +E YA +TMP G +G+NA E+Y+ FIA Sbjct: 253 VINQIKIENPHLWTPEFKEEIIQLIKDGVAMEYQYAKDTMPHGILGMNAEMFEEYLHFIA 312 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRR +QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 313 NRRLNQIGLPEQYPGAENPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 364 >gi|212212091|ref|YP_002303027.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii CbuG_Q212] gi|212010501|gb|ACJ17882.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii CbuG_Q212] Length = 401 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 222/349 (63%), Positives = 279/349 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M Sbjct: 52 ATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTA 111 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFE Sbjct: 112 DIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFE 171 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+ Sbjct: 172 EALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDR 231 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 L+DL FYVVFEG++FY GF QIL++GR KM G +EQ+QYI+RDES+H+NFGIDVIN Sbjct: 232 RLLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVIN 291 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW K FQ++ M+ E LE YA +TMP+G +GLNA + Y+Q+IANRR Sbjct: 292 QIKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRR 351 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL F +N FPWMSE++DLKKEKNFFETRV EYQ G LKWD Sbjct: 352 CAQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400 >gi|54297688|ref|YP_124057.1| ribonucleotide-diphosphate reductase subunit beta [Legionella pneumophila str. Paris] gi|53751473|emb|CAH12891.1| hypothetical protein lpp1739 [Legionella pneumophila str. Paris] Length = 367 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 225/349 (64%), Positives = 282/349 (80%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M Sbjct: 17 ATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 76 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE Sbjct: 77 DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 136 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +F TGT + DQ Sbjct: 137 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 196 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN Sbjct: 197 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 256 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLWT EF+ + ++ E LE YA +TMP G +G+NA E+Y+ FIANRR Sbjct: 257 QIKIENPHLWTPEFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 316 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 317 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365 >gi|226940720|ref|YP_002795794.1| ribonucleotide-diphosphate reductase subunit beta [Laribacter hongkongensis HLHK9] gi|226715647|gb|ACO74785.1| Ribonucleoside-diphosphate reductase beta chain [Laribacter hongkongensis HLHK9] Length = 357 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 217/348 (62%), Positives = 267/348 (76%), Gaps = 1/348 (0%) Query: 6 GLSPIQAGEK-RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 +SP +G RVN DKR++N +DVNQL+P KY WAW+KYL+ C NHWMP EV MQ D Sbjct: 10 AVSPAGSGTGGRVNAVDKRIINGDTDVNQLVPFKYHWAWDKYLATCANHWMPQEVNMQRD 69 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + LWK NGLTDDER ++ RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEE Sbjct: 70 IELWKRPNGLTDDERRIVIRNLGFFTTADSLAANNIVLGTYRHITAPECRQFLLRQAFEE 129 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QYI+ SLGLDEGE+FN Y E+ SI AK + + + TL P+F TGT ++DQ Sbjct: 130 AIHTHAYQYIVESLGLDEGEVFNAYHEIASIRAKDEFLIPFIDTLCDPAFKTGTPESDQL 189 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN Sbjct: 190 LLKSLIVFACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINS 249 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK ENPHLWT EFQ++ + +A LE AYA +TMP+G +GLNA ++Y+ FIANRR Sbjct: 250 IKQENPHLWTVEFQEELYGLFRKAIDLEYAYAEDTMPRGVLGLNAAMFKEYLDFIANRRM 309 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGLEPLF + +NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 310 QQIGLEPLFTHVDNPFPWMSEMIDLKKEKNFFETRVTEYQSGGALDWD 357 >gi|241664219|ref|YP_002982579.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia pickettii 12D] gi|309783064|ref|ZP_07677783.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp. 5_7_47FAA] gi|240866246|gb|ACS63907.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D] gi|308918172|gb|EFP63850.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp. 5_7_47FAA] Length = 402 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 210/338 (62%), Positives = 260/338 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL Sbjct: 65 RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 124 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF Sbjct: 185 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT Sbjct: 245 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 304 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGL+ LF Sbjct: 305 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALFP 364 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402 >gi|312960686|ref|ZP_07775192.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas fluorescens WH6] gi|311285212|gb|EFQ63787.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas fluorescens WH6] Length = 416 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 216/349 (61%), Positives = 276/349 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 AEGLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D D+ Sbjct: 188 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 247 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 248 ELLRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 307 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 308 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 367 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 368 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|317402620|gb|EFV83180.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter xylosoxidans C54] Length = 399 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 210/350 (60%), Positives = 268/350 (76%), Gaps = 1/350 (0%) Query: 4 NTGLSPIQAGEK-RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 GL+ RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 50 AAGLTASGNATSQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMS 109 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAF Sbjct: 110 RDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAF 169 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEA+H+H +QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +AD Sbjct: 170 EEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEAD 229 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 Q L+ L VF + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+I Sbjct: 230 QTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLI 289 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 N +K+ENPHLWT EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANR Sbjct: 290 NTVKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANR 349 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RC QIG+EPL+ ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 350 RCQQIGIEPLYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399 >gi|28868867|ref|NP_791486.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato str. DC3000] gi|213969520|ref|ZP_03397656.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. tomato T1] gi|301385974|ref|ZP_07234392.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato Max13] gi|302058701|ref|ZP_07250242.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato K40] gi|302134408|ref|ZP_07260398.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852106|gb|AAO55181.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213925616|gb|EEB59175.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. tomato T1] gi|330960626|gb|EGH60886.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. maculicola str. ES4326] gi|331016758|gb|EGH96814.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 415 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 215/349 (61%), Positives = 274/349 (78%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D D+ Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|326315613|ref|YP_004233285.1| ribonucleoside-diphosphate reductase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372449|gb|ADX44718.1| Ribonucleoside-diphosphate reductase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 387 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 207/341 (60%), Positives = 261/341 (76%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A +RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK Sbjct: 47 AQHRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDP 106 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H + Sbjct: 107 NGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 166 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 QYI+ SLGLDE E+FN Y EV SI K + + + + + P F TGT + DQ L+ L V Sbjct: 167 QYIVESLGLDESEIFNAYNEVDSIRNKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIV 226 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPH Sbjct: 227 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPH 286 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 LWT EF+++ + + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE Sbjct: 287 LWTAEFKEEIKGLFMKAVELEYQYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEA 346 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 347 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387 >gi|90425007|ref|YP_533377.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas palustris BisB18] gi|90107021|gb|ABD89058.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris BisB18] Length = 386 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 265/350 (75%), Positives = 297/350 (84%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + TGL I RV++DDK M+N R+DVNQLLPLK+ WAWEKYL+ACNNHWMPTEV MQ Sbjct: 37 DATGLGAIDRSGARVSIDDKAMINCRADVNQLLPLKHRWAWEKYLAACNNHWMPTEVSMQ 96 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALW S++GLT+DER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF Sbjct: 97 ADIALWTSRDGLTEDERRAIKRNLGFFATSESLVANNIVLAIYRHLTNPECRQYLLRQAF 156 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L P+F TGT +AD Sbjct: 157 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQHLDDPTFATGTVEAD 216 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 + FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI Sbjct: 217 RAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 276 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 NQIKIENP LWT FQ++ R ML EA LE AY+ +TMP+GF+GLNA CEQYM FI NR Sbjct: 277 NQIKIENPKLWTAGFQEELRGMLQEAAELEAAYSRDTMPRGFLGLNAALCEQYMHFITNR 336 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RC Q+GL P+F ENPFPWMSE +DLKKEKNFFETRV EYQ G L WD Sbjct: 337 RCAQLGLAPIFAEVENPFPWMSETMDLKKEKNFFETRVIEYQNGGALTWD 386 >gi|29654845|ref|NP_820537.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii RSA 493] gi|154705923|ref|YP_001423853.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii Dugway 5J108-111] gi|161831080|ref|YP_001597389.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii RSA 331] gi|29542113|gb|AAO91051.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii RSA 493] gi|154355209|gb|ABS76671.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii Dugway 5J108-111] gi|161762947|gb|ABX78589.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii RSA 331] Length = 401 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 222/349 (63%), Positives = 279/349 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M Sbjct: 52 ATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTA 111 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFE Sbjct: 112 DIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFE 171 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+ Sbjct: 172 EALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDR 231 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 L+DL FYVVFEG++FY GF QIL++GR KM G +EQ+QYI+RDES+H+NFGIDVIN Sbjct: 232 RLLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVIN 291 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW K FQ++ M+ E LE YA +TMP+G +GLNA + Y+Q+IANRR Sbjct: 292 QIKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRR 351 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL F +N FPWMSE++DLKKEKNFFETRV EYQ G LKWD Sbjct: 352 CAQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400 >gi|307546480|ref|YP_003898959.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas elongata DSM 2581] gi|307218504|emb|CBV43774.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas elongata DSM 2581] Length = 415 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 219/349 (62%), Positives = 283/349 (81%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL ++ G R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL NHWMP EV M Sbjct: 67 AAGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVNMNA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS +GLTDDER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQAFE Sbjct: 127 DIALWKSADGLTDDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY + SL +DEGE+FNMYRE+PS+ AK+ W+L++TQ+L+ P F TGT + DQ Sbjct: 187 EAIHTHAYQYCVESLAMDEGEVFNMYREIPSVAAKSAWSLKHTQSLARPDFHTGTPETDQ 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D+IN Sbjct: 247 ELLRNLVAFYCVTEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVDMIN 306 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLWT EFQ + M+ E T LEIAYA ++MP+G +G+NA E+Y+ FI NRR Sbjct: 307 QIKIENPHLWTPEFQDECTQMILEGTELEIAYARDSMPRGVLGMNAAIMEEYLHFICNRR 366 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ F +NPFPWMSE+IDL+KEKNFFETRVTEYQ G L WD Sbjct: 367 LAQIGLKEQFPGAQNPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 415 >gi|153208286|ref|ZP_01946665.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165919229|ref|ZP_02219315.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii RSA 334] gi|212219268|ref|YP_002306055.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella burnetii CbuK_Q154] gi|120576070|gb|EAX32694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165917090|gb|EDR35694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella burnetii RSA 334] gi|212013530|gb|ACJ20910.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii CbuK_Q154] Length = 401 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 222/349 (63%), Positives = 279/349 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M Sbjct: 52 ATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTA 111 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFE Sbjct: 112 DIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFE 171 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+ Sbjct: 172 EALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDR 231 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 L+DL FYVVFEG++FY GF QIL++GR KM G +EQ+QYI+RDES+H+NFGIDVIN Sbjct: 232 RLLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVIN 291 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW K FQ++ M+ E LE YA +TMP+G +GLNA + Y+Q+IANRR Sbjct: 292 QIKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRR 351 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL F +N FPWMSE++DLKKEKNFFETRV EYQ G LKWD Sbjct: 352 CAQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400 >gi|66046950|ref|YP_236791.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae B728a] gi|237798938|ref|ZP_04587399.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806191|ref|ZP_04592895.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|63257657|gb|AAY38753.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv. syringae B728a] gi|330980156|gb|EGH78342.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aptata str. DSM 50252] gi|331021792|gb|EGI01849.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027304|gb|EGI07359.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] Length = 415 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 215/349 (61%), Positives = 275/349 (78%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D D+ Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|331006663|ref|ZP_08329944.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC1989] gi|330419531|gb|EGG93916.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC1989] Length = 444 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 214/352 (60%), Positives = 280/352 (79%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + G+ ++ G RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV Sbjct: 93 IDPTPGIEELEMGAARVGVDEKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 152 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D++LWK +GL+DDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ Sbjct: 153 MTADISLWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQ 212 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P+F TGT + Sbjct: 213 AFEEAIHTHAYQYCIESLGMDEGEIFNMYREVPSVANKAAWSIAHTQGISDPTFNTGTTE 272 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQE L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID Sbjct: 273 TDQELLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 332 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLWT+EF+ + M+ E T LEIAYA +TMP+G +G+NA E+Y+QFI+ Sbjct: 333 IINQIKLENPHLWTEEFKAEVTQMVLEGTELEIAYARDTMPRGVLGMNAAMMEEYLQFIS 392 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRR Q+GL + +NPFPWMSE++DL+KEKNFFETRV EYQ G L W+ Sbjct: 393 NRRLAQLGLTEQYPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWE 444 >gi|229590245|ref|YP_002872364.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens SBW25] gi|229362111|emb|CAY49013.1| putative ribonucleoside-diphosphate reductase beta chain [Pseudomonas fluorescens SBW25] Length = 416 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 215/349 (61%), Positives = 276/349 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 AEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT + D+ Sbjct: 188 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 247 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 248 ELLRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 307 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 308 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 367 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 368 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|253998799|ref|YP_003050862.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4] gi|253985478|gb|ACT50335.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4] Length = 383 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 203/339 (59%), Positives = 262/339 (77%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 RV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+A WK + Sbjct: 45 TGRVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSSA 104 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QY Sbjct: 105 LTEDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 164 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDE E+FN Y+EV SI K ++ + + TL+ P F TGT ADQ+ L+ L VF Sbjct: 165 IVESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVFA 224 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K+ENPHLW Sbjct: 225 CIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDLINTLKLENPHLW 284 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EF+++ + ++ +A LE YA +TMP+G +GLNA ++Y++FIANRR QIG++ L+ Sbjct: 285 TPEFREEIKRLMQQAVELEYRYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGIDALY 344 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD Sbjct: 345 PGASNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 383 >gi|187930114|ref|YP_001900601.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia pickettii 12J] gi|187727004|gb|ACD28169.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12J] Length = 402 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 210/349 (60%), Positives = 261/349 (74%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 54 NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 113 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+A WK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 114 DIATWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 173 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ Sbjct: 174 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 233 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN Sbjct: 234 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 293 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRR Sbjct: 294 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRR 353 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL+ LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 354 CQQIGLDALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402 >gi|229592166|ref|YP_002874285.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens SBW25] gi|229364032|emb|CAY51597.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas fluorescens SBW25] Length = 416 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 215/349 (61%), Positives = 276/349 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 AEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT + D+ Sbjct: 188 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 247 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 248 ELLRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 307 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 308 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 367 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 368 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|329893650|ref|ZP_08269784.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC3088] gi|328923577|gb|EGG30889.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma proteobacterium IMCC3088] Length = 432 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 214/352 (60%), Positives = 277/352 (78%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M GL ++ G RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP E+ Sbjct: 81 MDLAPGLEELELGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEIN 140 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+A WKS + L+DDER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQ Sbjct: 141 MTADVATWKSADVLSDDERRIVMRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQ 200 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W+L +T +LS P+F TGT + Sbjct: 201 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVAKKATWSLSHTHSLSDPNFKTGTTE 260 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID Sbjct: 261 NDQTLLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 320 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 VINQIK+ENPHLWT++FQ++ ML E T +EI YA +TMP+G +G+NA E+Y+QFI Sbjct: 321 VINQIKLENPHLWTEDFQKEVIQMLLEGTQIEIEYARDTMPRGVLGMNAAMMEEYLQFIC 380 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRR Q+GL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 381 NRRLAQLGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 432 >gi|330880140|gb|EGH14289.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966559|gb|EGH66819.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. actinidiae str. M302091] Length = 415 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 215/349 (61%), Positives = 274/349 (78%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D D+ Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVDTDK 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|77460516|ref|YP_350023.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas fluorescens Pf0-1] gi|77384519|gb|ABA76032.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas fluorescens Pf0-1] Length = 416 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 215/349 (61%), Positives = 275/349 (78%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 AEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT + D+ Sbjct: 188 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 247 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 248 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 307 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 308 QIKIENPHLWDAEMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 367 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 368 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|239813962|ref|YP_002942872.1| ribonucleotide-diphosphate reductase subunit beta [Variovorax paradoxus S110] gi|239800539|gb|ACS17606.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus S110] Length = 391 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 206/337 (61%), Positives = 258/337 (76%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT Sbjct: 55 RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 114 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 115 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 174 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLDE E+FN Y EVPSI K + + + +S P+F TGT + DQ L+ L VF + Sbjct: 175 ESLGLDESEIFNAYNEVPSIREKDQFLIPFIDAISDPNFKTGTHETDQTLLKSLIVFACL 234 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT Sbjct: 235 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWTP 294 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 EF+ + + + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 295 EFKAEIKALFLKAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFPN 354 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 355 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 391 >gi|291615085|ref|YP_003525242.1| ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus ES-1] gi|291585197|gb|ADE12855.1| Ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus ES-1] Length = 382 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 211/343 (61%), Positives = 268/343 (78%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 R+ V+DKR++N+ +DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK Sbjct: 40 ASTSTGRIRVEDKRIINSSADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSADIALWK 99 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 + NGLTDDER ++KRNLGFF +++SL ANNI L YRH++NPECRQ+LLRQAFEEA+H+H Sbjct: 100 NPNGLTDDERRLVKRNLGFFTTADSLAANNIALGTYRHITNPECRQFLLRQAFEEAIHTH 159 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 +QYI+ SLGLDEGE+FNMY EV SI K + L + L++P F TGT + DQ+ L+ L Sbjct: 160 AYQYIVESLGLDEGEVFNMYHEVQSIRDKDEFLLPFIDVLTNPDFKTGTPENDQKLLRSL 219 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+HLNFG+DVINQIK+EN Sbjct: 220 IVFACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHLNFGVDVINQIKLEN 279 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 PHLWT F+++ R ++ + LE YA +TMP+G +GLNA ++Y++FIANRRC QIG+ Sbjct: 280 PHLWTPAFREEVRGLIQKGVELEYRYAEDTMPRGVLGLNAGMFKEYLRFIANRRCQQIGV 339 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 + L++ NPFPWM+E+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 340 DMLYQGATNPFPWMAEMIDLKKEKNFFETRVTEYQTGGALSWD 382 >gi|300690381|ref|YP_003751376.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum PSI07] gi|299077441|emb|CBJ50067.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Ralstonia solanacearum PSI07] Length = 402 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 211/349 (60%), Positives = 262/349 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 54 NNPNAAAAQSNRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 113 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 114 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 173 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ Sbjct: 174 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 233 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN Sbjct: 234 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 293 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRR Sbjct: 294 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRR 353 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL+ LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 354 CQQIGLDALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402 >gi|325272776|ref|ZP_08139120.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp. TJI-51] gi|324102083|gb|EGB99585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp. TJI-51] Length = 416 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 214/349 (61%), Positives = 276/349 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT + D+ Sbjct: 188 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 247 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 248 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 307 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 308 QIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 367 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 368 LTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|300022335|ref|YP_003754946.1| ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans ATCC 51888] gi|299524156|gb|ADJ22625.1| Ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans ATCC 51888] Length = 374 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 266/350 (76%), Positives = 294/350 (84%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + TGL I RV VDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ Sbjct: 25 DATGLGNIDRNGGRVRVDDKAMINARADVNQLLPLKYRWAWEKYLAGCNNHWMPTEVSMQ 84 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ALWKSK+GLT++ER MIKRNLGFFA+SESLVANNIVLAIYR+L+NPECRQYLLRQAF Sbjct: 85 ADIALWKSKDGLTEEERRMIKRNLGFFAASESLVANNIVLAIYRNLTNPECRQYLLRQAF 144 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L PSF TGTK+ D Sbjct: 145 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALAYTKHLDDPSFKTGTKETD 204 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 Q FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI Sbjct: 205 QAFLRDLIAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 264 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 NQIK EN HLW+K FQ + R ML +A LE AY +TMP G +GLN EQYM+FIANR Sbjct: 265 NQIKAENAHLWSKAFQDEVRGMLRDAAQLEAAYGRDTMPTGLLGLNPGLTEQYMEFIANR 324 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RC Q+GL P+FK ENPFPWMSE +DLKKEKNFFETRV EYQ G L W+ Sbjct: 325 RCAQLGLTPVFKDRENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 374 >gi|71737432|ref|YP_275887.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485935|ref|ZP_05639976.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628680|ref|ZP_06461634.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648392|ref|ZP_06479735.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aesculi str. 2250] gi|298487941|ref|ZP_07005980.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302184861|ref|ZP_07261534.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae 642] gi|71557985|gb|AAZ37196.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157492|gb|EFH98573.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866023|gb|EGH00732.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330896997|gb|EGH28545.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. japonica str. M301072PT] gi|330986742|gb|EGH84845.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010341|gb|EGH90397.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 415 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 214/349 (61%), Positives = 275/349 (78%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT + D+ Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|171057074|ref|YP_001789423.1| ribonucleotide-diphosphate reductase subunit beta [Leptothrix cholodnii SP-6] gi|170774519|gb|ACB32658.1| Ribonucleoside-diphosphate reductase [Leptothrix cholodnii SP-6] Length = 402 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 208/338 (61%), Positives = 255/338 (75%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+A WK NGL Sbjct: 65 RRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDPNGL 124 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 TDDER +IKRNLGFF +++SL ANNI L YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 125 TDDERRLIKRNLGFFVTADSLAANNITLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 184 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SLGLDE E+FN Y EV SI K + + Y + P F TGT + DQ L+ L VF Sbjct: 185 VESLGLDESEIFNAYHEVASIREKDEFLIPYIDAIMDPHFKTGTPENDQTLLKSLIVFAC 244 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK+ENPHLWT Sbjct: 245 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINAIKLENPHLWT 304 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 F+ + + + +A LE YA +TMP+G +GLNA + Y+++IANRR QIGLE LF Sbjct: 305 PAFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEELFP 364 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 402 >gi|170720377|ref|YP_001748065.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida W619] gi|169758380|gb|ACA71696.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida W619] Length = 416 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 214/349 (61%), Positives = 276/349 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT + D+ Sbjct: 188 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 247 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 248 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 307 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 308 QIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 367 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 368 LTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|148359319|ref|YP_001250526.1| ribonucleoside-diphosphate reductase subunit beta [Legionella pneumophila str. Corby] gi|296107366|ref|YP_003619066.1| ribonucleoside-diphosphate reductase beta chain [Legionella pneumophila 2300/99 Alcoy] gi|148281092|gb|ABQ55180.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella pneumophila str. Corby] gi|295649267|gb|ADG25114.1| ribonucleoside-diphosphate reductase beta chain [Legionella pneumophila 2300/99 Alcoy] gi|307610475|emb|CBX00047.1| hypothetical protein LPW_18021 [Legionella pneumophila 130b] Length = 367 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 225/349 (64%), Positives = 282/349 (80%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M Sbjct: 17 ATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 76 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE Sbjct: 77 DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 136 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +F TGT + DQ Sbjct: 137 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 196 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN Sbjct: 197 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 256 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLWT EF+ + ++ E LE YA +TMP G +G+NA E+Y+ FIANRR Sbjct: 257 QIKIENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 316 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 317 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365 >gi|270156779|ref|ZP_06185436.1| ribonucleotide-diphosphate reductase beta subunit [Legionella longbeachae D-4968] gi|289164772|ref|YP_003454910.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella longbeachae NSW150] gi|269988804|gb|EEZ95058.1| ribonucleotide-diphosphate reductase beta subunit [Legionella longbeachae D-4968] gi|288857945|emb|CBJ11805.1| putative ribonucleoside-diphosphate reductase, beta subunit [Legionella longbeachae NSW150] Length = 366 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 223/352 (63%), Positives = 282/352 (80%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + TG ++ G R++VDDKR++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ Sbjct: 13 LTGATGYESLEMGAARIHVDDKRIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEIS 72 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWK NGLT+ ERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ Sbjct: 73 MSADVALWKDPNGLTEAERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 132 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+H+H +QY+I SLGLDE E+FNMYRE+PS+ KA WAL YTQ+L+ +F TGT + Sbjct: 133 AFEEALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLADETFHTGTVE 192 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGID Sbjct: 193 NDQRLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGID 252 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 VINQIKIENPHLWT EF+++ ++ + LE YA +TMP+G +G+NA E+Y+ FIA Sbjct: 253 VINQIKIENPHLWTSEFKEEIIQLIRQGVDLEYQYAKDTMPQGILGMNAEMFEEYLHFIA 312 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRR QIGL + NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 313 NRRLTQIGLAEQYPGAVNPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 364 >gi|104780527|ref|YP_607025.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas entomophila L48] gi|95109514|emb|CAK14215.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas entomophila L48] Length = 415 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 214/349 (61%), Positives = 275/349 (78%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS +GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKSMDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT + D+ Sbjct: 187 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 307 QIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 367 LTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|160871658|ref|ZP_02061790.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella grylli] gi|159120457|gb|EDP45795.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella grylli] Length = 362 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 216/348 (62%), Positives = 277/348 (79%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL ++ G RV+VDDK+++N R+D+NQL+P KY WAWEKYL+AC NHWMP E+ M D Sbjct: 14 TGLETLEVGAARVHVDDKKIINCRADLNQLVPFKYKWAWEKYLAACANHWMPQEINMSAD 73 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +ALW+ GL +DERL+++R+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE Sbjct: 74 IALWRDAKGLREDERLIVERSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 133 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+H +QY+I SLG+DE +FNMYRE+P++ K WAL +TQ+L+ P+F TGT + DQ Sbjct: 134 ALHTHAYQYVIESLGMDEARIFNMYRELPTVAKKTEWALPFTQSLADPNFRTGTPETDQR 193 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L+DL FYVVFEG++FY GF+QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQ Sbjct: 194 LLRDLIAFYVVFEGIFFYVGFSQILSMGRQNKMTGTAEQFQYILRDESMHLNFGIDVINQ 253 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 IK+ENPHLWT EF++ ++ E LE YA +T+P+G +GLNA Y++FI NRR Sbjct: 254 IKLENPHLWTPEFKRYVINLIKEGVDLEYQYALDTLPRGILGLNANLMWDYLRFIGNRRF 313 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL + NP PWMSE+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 314 TQIGLAEQYPGVSNPLPWMSEIIDLKKEKNFFETRVTEYQTGGSLNWD 361 >gi|26987912|ref|NP_743337.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida KT2440] gi|167035231|ref|YP_001670462.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas putida GB-1] gi|24982621|gb|AAN66801.1|AE016309_3 ribonucleoside reductase, beta subunit [Pseudomonas putida KT2440] gi|166861719|gb|ABZ00127.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida GB-1] gi|313497534|gb|ADR58900.1| NrdB [Pseudomonas putida BIRD-1] Length = 416 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 214/349 (61%), Positives = 276/349 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 68 AEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 127 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQAFE Sbjct: 128 DIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQAFE 187 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT + D+ Sbjct: 188 EAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVETDK 247 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 248 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 307 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 308 QIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 367 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 368 LTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|320323423|gb|EFW79511.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. glycinea str. B076] gi|320327620|gb|EFW83632.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. glycinea str. race 4] gi|330876273|gb|EGH10422.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. glycinea str. race 4] Length = 415 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 214/349 (61%), Positives = 276/349 (79%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C+NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT + D+ Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|194290770|ref|YP_002006677.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus taiwanensis LMG 19424] gi|193224605|emb|CAQ70616.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Cupriavidus taiwanensis LMG 19424] Length = 396 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 212/349 (60%), Positives = 262/349 (75%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N + +RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M Sbjct: 48 NNPNAAAAQSNRRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSR 107 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFE Sbjct: 108 DIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFE 167 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ Sbjct: 168 EAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQ 227 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+IN Sbjct: 228 KLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLIN 287 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRR Sbjct: 288 QIKLENPHLWTAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRR 347 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 C QIGL+ LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 348 CQQIGLDQLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 396 >gi|52842002|ref|YP_095801.1| ribonucleotide-diphosphate reductase subunit beta [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629113|gb|AAU27854.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 381 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 225/349 (64%), Positives = 282/349 (80%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M Sbjct: 31 ATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 90 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE Sbjct: 91 DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 150 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +F TGT + DQ Sbjct: 151 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 210 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN Sbjct: 211 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 270 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLWT EF+ + ++ E LE YA +TMP G +G+NA E+Y+ FIANRR Sbjct: 271 QIKIENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 330 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 331 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 379 >gi|319764328|ref|YP_004128265.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans BC] gi|330826374|ref|YP_004389677.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans K601] gi|317118889|gb|ADV01378.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans BC] gi|329311746|gb|AEB86161.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans K601] Length = 396 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 203/339 (59%), Positives = 260/339 (76%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RV+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG Sbjct: 58 HRRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMTRDIALWKDPNG 117 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 118 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 177 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDEGE+FN Y EV SI AK + + + + + P+F TGT + DQ L+ L VF Sbjct: 178 IVESLGLDEGEIFNAYNEVESIRAKDEFLIPFIEAIMDPAFKTGTPENDQTLLKSLIVFA 237 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LW Sbjct: 238 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPQLW 297 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T F+ + + + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGL+ LF Sbjct: 298 TPAFKDEIKGLFLKAVDLEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLDALF 357 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 358 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 396 >gi|145588393|ref|YP_001154990.1| ribonucleotide-diphosphate reductase subunit beta [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046799|gb|ABP33426.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 394 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 210/356 (58%), Positives = 268/356 (75%), Gaps = 6/356 (1%) Query: 3 NNTGLSPIQAG------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56 T +P++A RVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP Sbjct: 39 QTTAPAPVEAANLSGGAALRVNAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMP 98 Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 E+ M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQY Sbjct: 99 QEINMNRDIALWKDPNGLTEDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQY 158 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176 LLRQAFEEA+H+H +QYI+ SLGLD+ E+FN Y E+ SI AK + + Y L++P+F T Sbjct: 159 LLRQAFEEAIHTHAYQYIVESLGLDQSEIFNAYNEIESIRAKDEFLIPYIDVLTNPNFKT 218 Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236 GT + DQ L+ L VF V EG++FY GF QIL++GR NKM G AEQYQYI+RDES+H N Sbjct: 219 GTLETDQTLLRSLIVFACVMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCN 278 Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296 FGID+INQIK+ENP LWT F+ + +++ +A LE YA +TMP+G +GLNAP + Y+ Sbjct: 279 FGIDLINQIKLENPQLWTSAFKDEIKSIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGYL 338 Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ++I NRRC QIGL+ +F ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 339 RYICNRRCLQIGLDAMFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 394 >gi|327480258|gb|AEA83568.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas stutzeri DSM 4166] Length = 415 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 218/347 (62%), Positives = 281/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY EVPS+ KA+W L+YT+++S P+F TGT + D++F Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEVPSVAKKASWGLKYTRSISDPTFQTGTPETDKQF 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 249 LKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWNAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|257055668|ref|YP_003133500.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis DSM 43017] gi|256585540|gb|ACU96673.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis DSM 43017] Length = 349 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 261/343 (76%), Positives = 299/343 (87%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + G RVNVDDK M+NAR+DVNQLLP+KYGWAWEKYL+ C+NHWMPTEV MQ D+ALWK Sbjct: 7 LDFGAARVNVDDKAMINARADVNQLLPMKYGWAWEKYLAGCDNHWMPTEVSMQADIALWK 66 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 S +GLTDDERLM+KRNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQAFEEAVH+H Sbjct: 67 SPDGLTDDERLMLKRNLGFFATAESLVANNLVLAVYRHLTNPECRQYLLRQAFEEAVHTH 126 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 TFQYI SLGLDEGELFN YREVPSI K +WAL+YT+ L P+FTTGT +ADQEFL+DL Sbjct: 127 TFQYICVSLGLDEGELFNAYREVPSIANKDSWALRYTRNLEDPNFTTGTMEADQEFLRDL 186 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 FYVVFEGMWFYTGFAQ+LSLGR NKMVGIAEQYQYI+RDES+HLNFG+D INQIK EN Sbjct: 187 VAFYVVFEGMWFYTGFAQVLSLGRRNKMVGIAEQYQYILRDESIHLNFGVDCINQIKAEN 246 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 PHLWT EFQQ+ R ML EA LE+AYAH+TMP+ +GL+A CEQYM FI +RR Q+GL Sbjct: 247 PHLWTPEFQQQVRDMLVEACELEVAYAHDTMPRPMLGLSAELCEQYMHFITDRRAAQLGL 306 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +P+F ENPFPWMSEVIDL+KEKNFFETRVT+Y+ GA L WD Sbjct: 307 DPVFGERENPFPWMSEVIDLRKEKNFFETRVTDYRSGAALAWD 349 >gi|74317993|ref|YP_315733.1| ribonucleotide-diphosphate reductase subunit beta [Thiobacillus denitrificans ATCC 25259] gi|74057488|gb|AAZ97928.1| ribonucleoside-diphosphate reductase beta chain [Thiobacillus denitrificans ATCC 25259] Length = 376 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 204/339 (60%), Positives = 258/339 (76%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 RV DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP EV M D+A WK Sbjct: 38 TTRVRASDKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIAQWKDPTA 97 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QY Sbjct: 98 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 157 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDE E+FN Y E+ SI K ++ + + TL++P F TGT + DQ+ L+ L VF Sbjct: 158 IVESLGLDEAEIFNAYHEIESIRDKDDFLIPFIDTLTNPEFKTGTPENDQKLLKSLIVFA 217 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK ENPHLW Sbjct: 218 CIMEGIFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTIKQENPHLW 277 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EF+ + RT++ + LE YA +TMP+G +GLN+ ++Y++FI+NRRC QIGL+ +F Sbjct: 278 TSEFKAEIRTLIQKGVELEFRYAEDTMPRGVLGLNSAQFKEYLRFISNRRCQQIGLDEMF 337 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWM+E+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 338 PGVSNPFPWMAEMIDLKKEKNFFETRVTEYQTGGALSWD 376 >gi|311103857|ref|YP_003976710.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter xylosoxidans A8] gi|310758546|gb|ADP13995.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter xylosoxidans A8] Length = 399 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 208/338 (61%), Positives = 266/338 (78%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ NGL Sbjct: 62 QRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 121 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 122 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 181 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +ADQ L+ L VF Sbjct: 182 VESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 241 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN +K+ENPHLWT Sbjct: 242 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLWT 301 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANRRC QIG+EPL+ Sbjct: 302 PEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 361 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 362 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399 >gi|241764092|ref|ZP_04762129.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN] gi|241366556|gb|EER61044.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN] Length = 398 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 208/339 (61%), Positives = 260/339 (76%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 60 HRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 119 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 120 LTDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 179 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDE E+FN Y EV SI K + + + + + P+F TGT +ADQ L+ L VF Sbjct: 180 IVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFKTGTPEADQRLLKSLIVFA 239 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLW Sbjct: 240 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLW 299 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EF+ + + + A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 300 TAEFKAEIKALFMRAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLETLF 359 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 360 PNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 398 >gi|329902475|ref|ZP_08273120.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548767|gb|EGF33404.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 416 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 212/345 (61%), Positives = 263/345 (76%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P +R+N DKR++N +DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ L Sbjct: 72 EPKADPARRMNAADKRIINGNTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIEL 131 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WKS NGLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H Sbjct: 132 WKSPNGLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 191 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI SLGLDE E+FN Y EV SI K + + + L+ P FTTGT DQ+ L+ Sbjct: 192 THAYQYITESLGLDEAEIFNAYHEVKSIRDKDEFLIPFIDALTDPLFTTGTTINDQKLLK 251 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L VF + EG++FY GFAQIL+LGR NKMVG AEQYQYI+RDES+H NFGID++N IK+ Sbjct: 252 SLIVFSCLMEGLFFYVGFAQILALGRQNKMVGAAEQYQYILRDESMHCNFGIDLVNTIKM 311 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+ + + + A LE YA +TMP+G +GLNAP + Y++FIANRR QI Sbjct: 312 ENPHLWTPEFRDEIKALFLTAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQI 371 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GLEP+F+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 372 GLEPMFENEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416 >gi|91787004|ref|YP_547956.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas sp. JS666] gi|91696229|gb|ABE43058.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666] Length = 406 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 208/337 (61%), Positives = 258/337 (76%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT Sbjct: 70 RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 129 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 130 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIT 189 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLDE E+FN Y EV SI K + + + + +S P F TGT +ADQ L+ L VF + Sbjct: 190 ESLGLDEAEIFNAYNEVQSIKDKDQFLIPFIEVISDPHFKTGTTEADQTLLKSLIVFACL 249 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT Sbjct: 250 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 309 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 EF+ + + + +A LE YA +TMP+G +GLNA + Y+++IANRR QIGLE LF Sbjct: 310 EFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLETLFPN 369 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 370 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 406 >gi|293603286|ref|ZP_06685715.1| ribonucleotide-diphosphate reductase subunit beta subunit [Achromobacter piechaudii ATCC 43553] gi|292818321|gb|EFF77373.1| ribonucleotide-diphosphate reductase subunit beta subunit [Achromobacter piechaudii ATCC 43553] Length = 398 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 207/338 (61%), Positives = 264/338 (78%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV V DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ NGL Sbjct: 61 QRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGL 120 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI Sbjct: 121 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 180 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +ADQ L+ L VF Sbjct: 181 VESLDLDEAEIFNAYNEVPSIRAKDQFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFAC 240 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN +K+ENPHLWT Sbjct: 241 LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLWT 300 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 F+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANRRC QIG+EPL+ Sbjct: 301 PAFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLYP 360 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 361 QEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398 >gi|120609557|ref|YP_969235.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax citrulli AAC00-1] gi|120588021|gb|ABM31461.1| Ribonucleoside-diphosphate reductase [Acidovorax citrulli AAC00-1] Length = 387 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 206/339 (60%), Positives = 260/339 (76%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 49 HRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 108 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 109 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 168 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDE E+FN Y EV SI K + + + + + P F TGT + DQ L+ L VF Sbjct: 169 IVESLGLDESEIFNAYNEVDSIRHKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIVFA 228 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLW Sbjct: 229 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLW 288 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EF+++ + + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 289 TAEFKEEIKGLFMKAVELEYQYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALF 348 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 349 PNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387 >gi|119478322|ref|ZP_01618353.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2143] gi|119448662|gb|EAW29907.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma proteobacterium HTCC2143] Length = 422 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 213/349 (61%), Positives = 281/349 (80%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL ++ G R+ V+DK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 74 TAGLEELELGAARLTVEDKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 133 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK NGL+DDER ++ R+LG+F++++SLVANN++LAIYRH++NPECRQYLLRQAFE Sbjct: 134 DVALWKDPNGLSDDERRIVMRSLGYFSTADSLVANNLILAIYRHITNPECRQYLLRQAFE 193 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY + SL +DEGE+FNMYRE+PSI KA W+L++T +LS P+F TGT + DQ Sbjct: 194 EAIHTHAYQYCVESLAMDEGEVFNMYRELPSIAKKAAWSLRHTHSLSDPNFKTGTPETDQ 253 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 254 ELLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 313 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIK+ENP LW+++FQQ+ M+ E T LEI YA ++MP+G +G+NA E+Y+QFI+NRR Sbjct: 314 QIKLENPQLWSEKFQQEIIQMILEGTQLEIEYARDSMPRGVLGMNAAMMEEYLQFISNRR 373 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +Q+GL ++ +NPFPWMSE++DL+KEKNFFETRV EYQ G L W+ Sbjct: 374 LNQLGLPEQYQGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALNWE 422 >gi|146308172|ref|YP_001188637.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas mendocina ymp] gi|145576373|gb|ABP85905.1| Ribonucleoside-diphosphate reductase [Pseudomonas mendocina ymp] Length = 416 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 214/347 (61%), Positives = 278/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLDDLEGAAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F TGT + D++F Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFNTGTPETDRQF 249 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 250 LKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQI 309 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW + + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 310 KIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 369 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|149927167|ref|ZP_01915424.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp. MED105] gi|149824106|gb|EDM83327.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp. MED105] Length = 399 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 204/345 (59%), Positives = 258/345 (74%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + A RVN DKR++N +DVNQL+P KY WAWEKYLS C NHWMP E+ M D+AL Sbjct: 55 AAEGAKAGRVNAADKRVINGTTDVNQLVPFKYKWAWEKYLSQCANHWMPQEINMDRDIAL 114 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 WK NGLT+DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAF+EA+H Sbjct: 115 WKDPNGLTEDERLIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFDEAIH 174 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 +H +QYI+ SLG+ E E FN Y E+ I AK ++ L + L+ PSF TGT +ADQ L+ Sbjct: 175 THAYQYIVESLGIPEAETFNAYNEISCIKAKDDFLLPFIDVLTDPSFKTGTLEADQTLLK 234 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 L F + EGM+FY GF QIL+LGR NKM+G AEQ+QYI+RDES H FGID+IN +K+ Sbjct: 235 SLIAFACIMEGMFFYVGFVQILALGRQNKMIGAAEQFQYILRDESAHCTFGIDLINTVKL 294 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 ENPHLWT EF+++ + M +A LE AYA +TMP+G +GLN+ +YM+FI NRR +QI Sbjct: 295 ENPHLWTPEFKEEIKAMFRKAVELEHAYAVDTMPRGVLGLNSAQFMEYMKFICNRRSNQI 354 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 GL L++ NPFPWMSE++DLKKE NFFE RVTEYQ G L WD Sbjct: 355 GLGTLYEGATNPFPWMSEMMDLKKETNFFERRVTEYQTGGALSWD 399 >gi|121606275|ref|YP_983604.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas naphthalenivorans CJ2] gi|120595244|gb|ABM38683.1| Ribonucleoside-diphosphate reductase [Polaromonas naphthalenivorans CJ2] Length = 387 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 210/351 (59%), Positives = 261/351 (74%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A I A KRV DKR++N ++DVNQL+P KY WAWEKYL++C NHWMP EV M Sbjct: 37 APPLDTHEIPAKAKRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLASCANHWMPQEVNM 96 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGL+DDER ++ RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 97 TRDIALWKDPNGLSDDERRLVMRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 156 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEA+H+H +QYI SLGLDEGE+FN Y EV SI K + + + + +S P F TGT ++ Sbjct: 157 FEEAIHTHAYQYITESLGLDEGEIFNAYNEVQSIKDKDQFLIPFIEAISDPGFKTGTLES 216 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+ Sbjct: 217 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 276 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQ+K+ENP LWT EF+ + + +A LE YA +TMP+G +GLNA + Y+++IAN Sbjct: 277 INQLKLENPQLWTAEFKAEINALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIAN 336 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RR QIGLE LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 337 RRATQIGLETLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387 >gi|146282010|ref|YP_001172163.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas stutzeri A1501] gi|145570215|gb|ABP79321.1| ribonucleoside reductase, small chain [Pseudomonas stutzeri A1501] Length = 415 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 217/347 (62%), Positives = 281/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL+ ++ RV VD+KRM+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F TGT + D++F Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPETDKQF 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID+INQI Sbjct: 249 LKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDMINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW E + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWDAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNASMMEDYLKFIANRRLT 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|330892405|gb|EGH25066.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. mori str. 301020] Length = 415 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 212/349 (60%), Positives = 274/349 (78%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNKTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVA+N+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVAHNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT + D+ Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 307 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 366 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 367 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|330504346|ref|YP_004381215.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas mendocina NK-01] gi|328918632|gb|AEB59463.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas mendocina NK-01] Length = 416 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 214/347 (61%), Positives = 277/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 70 GLDDLEGASARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 129 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 130 ALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 189 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P F TGT + D++F Sbjct: 190 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPQFQTGTPETDRQF 249 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 250 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQI 309 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW + + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 310 KIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 369 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 370 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416 >gi|254429337|ref|ZP_05043044.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp. DG881] gi|196195506|gb|EDX90465.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp. DG881] Length = 355 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 218/347 (62%), Positives = 277/347 (79%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 G++ ++ RV VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV M DL Sbjct: 9 GVAELEGASGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADL 68 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWK +GLTDDER ++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ+FEEA Sbjct: 69 ALWKKADGLTDDERRIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQSFEEA 128 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY+E+PS+ KA W +QYT+ LS P FTTGT + D+ Sbjct: 129 IHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTVETDKAL 188 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVINQI Sbjct: 189 LENLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGIDVINQI 248 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K+ENPHLW + + K+ M+ E LEI YA +TMP+G +G+NA E+Y+QFIANRR Sbjct: 249 KLENPHLWDAQMRDKATQMILEGAELEIQYARDTMPRGVLGMNAAMMEEYLQFIANRRLA 308 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GL FK NPFPWMSE++DL+KEKNFFETRVTEYQ G L W+ Sbjct: 309 QLGLPEQFKGVNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 355 >gi|299533977|ref|ZP_07047329.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas testosteroni S44] gi|298717886|gb|EFI58891.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas testosteroni S44] Length = 363 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 210/351 (59%), Positives = 264/351 (75%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + + KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M Sbjct: 13 ATSAEAGASTSTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 72 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 73 TRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 132 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P+F TGT + Sbjct: 133 FEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPET 192 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+ Sbjct: 193 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 252 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQ+K+ENPHLWT EF+Q+ + +A LE YA +TMP+G +G+NA + Y+++IAN Sbjct: 253 INQLKLENPHLWTAEFKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIAN 312 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RR QIGLE LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 313 RRATQIGLEELFPGEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363 >gi|221065168|ref|ZP_03541273.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1] gi|220710191|gb|EED65559.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1] Length = 363 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 210/351 (59%), Positives = 263/351 (74%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + + KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M Sbjct: 13 ATSAEAGASTSTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 72 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA Sbjct: 73 TRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 132 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P+F TGT + Sbjct: 133 FEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPET 192 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+ Sbjct: 193 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 252 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQ+K+ENPHLWT EF+Q+ + A LE YA +TMP+G +G+NA + Y+++IAN Sbjct: 253 INQLKLENPHLWTAEFKQEITELFQRAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIAN 312 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RR QIGLE LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 313 RRATQIGLEELFPGEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363 >gi|134095932|ref|YP_001101007.1| ribonucleotide-diphosphate reductase subunit beta [Herminiimonas arsenicoxydans] gi|133739835|emb|CAL62886.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Herminiimonas arsenicoxydans] Length = 395 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 208/340 (61%), Positives = 266/340 (78%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +R++ DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ N Sbjct: 56 PTRRMDAADKRIINGKTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 115 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +Q Sbjct: 116 GLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 175 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI+ SLGLDEGE+FN Y E+ SI K + + + L+ P+FTTGT + DQ L+ L VF Sbjct: 176 YIVESLGLDEGEIFNAYNEIESIRDKDQFLIPFIDVLTDPNFTTGTTENDQTLLRSLIVF 235 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++FY GFAQIL+LGR NKM+G AEQYQYI+RDES+H NFGID+IN IK+ENPHL Sbjct: 236 ACLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHL 295 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 WT +F+ + + + A LE YA +TMP+G +GLNAP + Y++FIANRR QIGLEP+ Sbjct: 296 WTPQFRDEIKALFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPM 355 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 F+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 356 FEQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 395 >gi|15596352|ref|NP_249846.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa PAO1] gi|107100605|ref|ZP_01364523.1| hypothetical protein PaerPA_01001630 [Pseudomonas aeruginosa PACS2] gi|116049087|ref|YP_792111.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa UCBPP-PA14] gi|152988648|ref|YP_001349579.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa PA7] gi|218892881|ref|YP_002441750.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa LESB58] gi|254239525|ref|ZP_04932847.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192] gi|296390475|ref|ZP_06879950.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas aeruginosa PAb1] gi|313106126|ref|ZP_07792381.1| NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa 39016] gi|9947077|gb|AAG04544.1|AE004545_7 NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa PAO1] gi|115584308|gb|ABJ10323.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa UCBPP-PA14] gi|126192903|gb|EAZ56966.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192] gi|150963806|gb|ABR85831.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa PA7] gi|187939552|gb|ACD38699.1| ribonucleoside reductase small chain [Pseudomonas aeruginosa] gi|218773109|emb|CAW28921.1| NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa LESB58] gi|310878883|gb|EFQ37477.1| NrdB, tyrosyl radical-harboring component of class Ia ribonucleotide reductase [Pseudomonas aeruginosa 39016] Length = 415 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 215/347 (61%), Positives = 278/347 (80%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV M D+ Sbjct: 69 GLDDLEGSAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMNADI 128 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 ALWKSK+GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA Sbjct: 129 ALWKSKDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEA 188 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P F TGT + D++F Sbjct: 189 IHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPMFQTGTPETDRQF 248 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQI Sbjct: 249 LRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGIDVINQI 308 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 KIENPHLW + + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 309 KIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRRLT 368 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 369 QIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415 >gi|160896947|ref|YP_001562529.1| ribonucleotide-diphosphate reductase subunit beta [Delftia acidovorans SPH-1] gi|160362531|gb|ABX34144.1| Ribonucleoside-diphosphate reductase [Delftia acidovorans SPH-1] Length = 363 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 210/339 (61%), Positives = 262/339 (77%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 25 HKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPNG 84 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY Sbjct: 85 LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 144 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDEGE+FN Y EVPSI K + + + + + P+F TGT + DQ L+ L VF Sbjct: 145 IVESLGLDEGEIFNAYLEVPSIRDKDEFLIPFIEAIMDPAFKTGTFETDQTLLKSLIVFA 204 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LW Sbjct: 205 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPQLW 264 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EF+++ + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 265 TPEFKEEITALFVKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALF 324 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 325 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363 >gi|325983070|ref|YP_004295472.1| ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212] gi|325532589|gb|ADZ27310.1| Ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212] Length = 381 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 211/351 (60%), Positives = 270/351 (76%), Gaps = 2/351 (0%) Query: 4 NTGLSPIQAGE--KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 P AG +R+ V+DK+++N +DVNQL+P KY WAW+KYL AC NHWMP E+ M Sbjct: 31 TAADEPAVAGSANRRIAVEDKQIINCNADVNQLVPFKYKWAWDKYLGACANHWMPQEISM 90 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ALW+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQA Sbjct: 91 SRDIALWRDPNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQA 150 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI K + + + TL++P F TGT + Sbjct: 151 FEEAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIDTLTNPHFKTGTLET 210 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 DQ+ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDV Sbjct: 211 DQQLLRSLIVFACIMEGLFFYVGFTQILALGRQNKMTGSAEQYQYILRDESMHCNFGIDV 270 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 INQIK+ENP LWTK F+++ ++ +A LE YA +TMP+G +G+NAP ++Y+++IAN Sbjct: 271 INQIKMENPQLWTKAFREEIAALMQKAVALEYRYAEDTMPRGVLGMNAPMFKEYLRYIAN 330 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 RRC QIGL+ L+ NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD Sbjct: 331 RRCQQIGLDTLYPNANNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 381 >gi|255019898|ref|ZP_05291973.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] gi|254970678|gb|EET28165.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] Length = 374 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 209/338 (61%), Positives = 267/338 (78%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP EV M D+ALWK GL Sbjct: 37 ERVRAEDKRIINGSADVNQLVPFKYHWAWDKYLAACANHWMPQEVQMARDIALWKDPKGL 96 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI Sbjct: 97 TEDERRIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 156 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + S+GLDEGE+FNMY EVPSI AK + L + +TL+ PSF TGT + DQ+ L+ L VF Sbjct: 157 VESIGLDEGEIFNMYHEVPSIRAKDEFLLPFIRTLTDPSFHTGTPENDQKLLRSLIVFAA 216 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+INQIK+ENP LWT Sbjct: 217 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLINQIKVENPDLWT 276 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + FQ++ +++ + LE AYA +TMP+G +GLNAP + Y+++I NRR Q+GL + Sbjct: 277 EPFQEEIVSLIRKGVELECAYADDTMPRGVLGLNAPIFKDYVKYIGNRRLQQLGLPVQWA 336 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD Sbjct: 337 GIQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 374 >gi|121608466|ref|YP_996273.1| ribonucleotide-diphosphate reductase subunit beta [Verminephrobacter eiseniae EF01-2] gi|121553106|gb|ABM57255.1| Ribonucleoside-diphosphate reductase [Verminephrobacter eiseniae EF01-2] Length = 399 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 209/359 (58%), Positives = 264/359 (73%), Gaps = 9/359 (2%) Query: 3 NNTGLSPIQAG---------EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH 53 TG++P +G ++RVN DKR++N ++DVNQL+PLKY WAWEKYL++C NH Sbjct: 41 PATGIAPASSGTRHQAPDAAQRRVNAADKRIINGQTDVNQLVPLKYKWAWEKYLASCANH 100 Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 WMP EV M D+ALWK+ GL+DDER +IKRNLGFF +++SL ANNIVL YRH++ PEC Sbjct: 101 WMPQEVNMTRDIALWKTPGGLSDDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPEC 160 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 RQ+LLRQAFEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P Sbjct: 161 RQFLLRQAFEEAIHTHAYQYIVESLGLDESEIFNAYNEVRSIRDKDQFLIPFIEAIMDPH 220 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 F TG+ DQ L+ L VF + EG++FY GFAQIL+LGR NKM G AEQYQYI+RDES+ Sbjct: 221 FHTGSAANDQTLLKSLIVFACLMEGLFFYVGFAQILALGRQNKMTGAAEQYQYILRDESM 280 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293 H NFGID+INQIK+ENP LWT F+ + + +A LE YA +TMP G +G+NA + Sbjct: 281 HCNFGIDLINQIKLENPLLWTTAFKAEIEALFLQAVELEYRYAEDTMPHGVLGMNASMFK 340 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Y+++IANRR QIGLE LF NPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 341 GYLRYIANRRATQIGLETLFPQETNPFPWMSEMIDLKKERNFFETRVIEYQSGGALCWD 399 >gi|255019430|ref|ZP_05291537.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] gi|254971128|gb|EET28583.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Acidithiobacillus caldus ATCC 51756] Length = 345 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 210/340 (61%), Positives = 272/340 (80%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 RV V+DKR++N R+DVNQL+P KY WAW+KYL+AC NHWMP EV M D+ALWK Sbjct: 5 ATARVRVEDKRIINGRADVNQLVPFKYQWAWDKYLAACANHWMPQEVQMARDIALWKDPK 64 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +Q Sbjct: 65 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 124 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI+ SLGLDEGE+FNMY EVPS+ AK + + + +TL+ P F TGT++ DQ+ L+ L VF Sbjct: 125 YIVESLGLDEGEIFNMYHEVPSVRAKDEFLIPFIETLADPDFQTGTRENDQKLLRSLIVF 184 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+INQIK+ENP L Sbjct: 185 ATIMEGLFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLINQIKLENPQL 244 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 WT+ FQQ+ ++ + LE AYA +TMP+G +GLNAP ++Y+++I NRR QIGL+P Sbjct: 245 WTEGFQQEIVGLIRQGVELECAYADDTMPRGILGLNAPMFKEYVRYIGNRRLSQIGLKPQ 304 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ++ +NPFPWMSE++DLKKEKNFFE+RVT+YQ G L WD Sbjct: 305 WENVQNPFPWMSEMMDLKKEKNFFESRVTDYQTGGALSWD 344 >gi|300309722|ref|YP_003773814.1| transmembrane ribonucleoside reductase small subunit [Herbaspirillum seropedicae SmR1] gi|300072507|gb|ADJ61906.1| transmembrane ribonucleoside reductase (small chain) protein [Herbaspirillum seropedicae SmR1] Length = 388 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 208/339 (61%), Positives = 264/339 (77%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RVN DKR++N +DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ NG Sbjct: 50 TRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNG 109 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QY Sbjct: 110 LTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 169 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLDE E+FN Y EV SI K + + + TL+ P F TGT + DQ+ L+ L VF Sbjct: 170 IVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFA 229 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY GF QIL+LGR NKM+G AEQYQYI+RDES+H NFGID+IN +K+ENPHLW Sbjct: 230 CIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLW 289 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EF+++ +++ A LE YA +TMP+G +GLNAP + Y++FIANRR QIGL+PLF Sbjct: 290 TPEFREEIKSLFLRAVELEYRYAEDTMPRGVLGLNAPMFKSYLRFIANRRAQQIGLDPLF 349 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 350 AQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 388 >gi|224825450|ref|ZP_03698555.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002] gi|224602371|gb|EEG08549.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002] Length = 360 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 204/340 (60%), Positives = 257/340 (75%), Gaps = 1/340 (0%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV MQ D+ WK+ Sbjct: 22 GTGRVNASDKRVINGQTDVNQLVPFKYKWAWEKYLAQCANHWMPQEVNMQRDIEQWKT-G 80 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L++DE ++KRNLGFF +++SL ANNIVL YR ++ PECRQ+LLRQAF+EA+H+H +Q Sbjct: 81 QLSEDEMRLVKRNLGFFVTADSLAANNIVLGTYRQITAPECRQFLLRQAFDEAIHTHAYQ 140 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI+ SLGLDEGE+FN Y E+ SI K + + + TL +P F TGT + DQ+ L+ L VF Sbjct: 141 YIVESLGLDEGEVFNAYHEIKSIRDKDEFLIPFIDTLCNPEFKTGTTETDQQLLKSLIVF 200 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K ENP L Sbjct: 201 ACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTVKQENPQL 260 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 WT+EF+ + + A LE AYA +TMP+G +GLNA ++Y++FIANRR QIGLEP+ Sbjct: 261 WTEEFKAEITGLFKHAVELEYAYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGLEPM 320 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 F NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 321 FPGVTNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 360 >gi|171463021|ref|YP_001797134.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192559|gb|ACB43520.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 394 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 205/337 (60%), Positives = 260/337 (77%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 RV DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGLT Sbjct: 58 RVKAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMNRDIALWKDPNGLT 117 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI+ Sbjct: 118 EDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 177 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLD+ E+FN Y E+ SI AK + + Y L++P+F TGT +ADQ L+ L VF V Sbjct: 178 ESLGLDQSEIFNAYHEIDSIRAKDEFLIPYIDVLTNPNFKTGTLEADQTLLRSLIVFACV 237 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QIL++GR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW Sbjct: 238 MEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWIS 297 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 F+ + +++ +A LE YA +TMP+G +GLNAP + +++I NRRC QIGL+ +F Sbjct: 298 AFKDEIKSIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGCLRYICNRRCLQIGLDAMFPN 357 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 358 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 394 >gi|30250346|ref|NP_842416.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas europaea ATCC 19718] gi|30181141|emb|CAD86334.1| Ribonucleotide reductase [Nitrosomonas europaea ATCC 19718] Length = 382 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 216/340 (63%), Positives = 271/340 (79%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M D+ALWK N Sbjct: 43 DHRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPN 102 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLT+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +Q Sbjct: 103 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQ 162 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI+ S+GLDEGE+FN Y E+ SI K + + + TL+ PSF TGT + DQ+ L+ L VF Sbjct: 163 YIVESIGLDEGEIFNAYHEIGSIRDKDEFLIPFIDTLTDPSFRTGTLETDQQLLKSLIVF 222 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVINQIK+ENPHL Sbjct: 223 ACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKLENPHL 282 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 WT+EF+++ ++ +A LE YA +TMP+G +GLNAP ++Y++FI NRR HQIGL+PL Sbjct: 283 WTREFREEISALMRKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRFIINRRSHQIGLDPL 342 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 F NPFPWMSE+IDLKKEKNFFETRV EYQ G L WD Sbjct: 343 FPEAGNPFPWMSEMIDLKKEKNFFETRVIEYQTGGVLSWD 382 >gi|34497739|ref|NP_901954.1| ribonucleotide-diphosphate reductase subunit beta [Chromobacterium violaceum ATCC 12472] gi|34103595|gb|AAQ59956.1| ribonucleoside-diphosphate reductase system [Chromobacterium violaceum ATCC 12472] Length = 360 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 207/352 (58%), Positives = 262/352 (74%), Gaps = 2/352 (0%) Query: 2 ANNTGLSPIQA-GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A + S + A G RVNV DK+++N +DVNQL+P K+ WAWEKYL+ C NHWMP EV Sbjct: 10 APSAAPSSMDAHGTGRVNVVDKKVINGTTDVNQLVPFKHKWAWEKYLAQCANHWMPQEVN 69 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 MQ D+ WK+ LT+DE ++KRNLGFF +++SL ANNIVL YR +++PECRQ+LLRQ Sbjct: 70 MQRDIEQWKT-GQLTEDEMRIVKRNLGFFVTADSLAANNIVLGTYRQITSPECRQFLLRQ 128 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AF+EA+H+H +QYI+ SLGLDEGE+FN Y EV SI K + + + L +P F TGT + Sbjct: 129 AFDEAIHTHAYQYIVESLGLDEGEVFNAYHEVKSIRDKDEFLIPFIDVLCNPEFKTGTVE 188 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 DQ+ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID Sbjct: 189 NDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGID 248 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +IN IK+ENP LWT F+ + + +A LE AYA +TMP+G +GLNA ++Y++FIA Sbjct: 249 LINTIKLENPLLWTDSFKAEIVDLFKQAVELEYAYAEDTMPRGVLGLNASMFKEYLRFIA 308 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRR QIGL+PLF NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD Sbjct: 309 NRRMQQIGLDPLFPGVNNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 360 >gi|152980709|ref|YP_001354668.1| ribonucleotide-diphosphate reductase subunit beta [Janthinobacterium sp. Marseille] gi|151280786|gb|ABR89196.1| ribonucleoside-diphosphate reductase beta chain [Janthinobacterium sp. Marseille] Length = 392 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 210/340 (61%), Positives = 269/340 (79%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +R++ DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ N Sbjct: 53 PTRRMDAADKRVINGQTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 112 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 GLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +Q Sbjct: 113 GLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 172 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI+ SLGLDEGE+FN Y EV SI K + + + +TL+ P F TGT + DQ+ L+ L VF Sbjct: 173 YIVESLGLDEGEIFNAYNEVESIRDKDQFLIPFIETLTDPEFKTGTTENDQKLLRSLIVF 232 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++FY GFAQIL+LGR NKM+G AEQYQYI+RDES+H NFGID+IN IK+ENPHL Sbjct: 233 ACLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHL 292 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 WT +F+++ +T+ A LE YA +TMP+G +GLNAP + Y++FIANRR QIGLEP+ Sbjct: 293 WTPQFREEIKTLFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPM 352 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 F+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 353 FEQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 392 >gi|261855609|ref|YP_003262892.1| ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus c2] gi|261836078|gb|ACX95845.1| Ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus c2] Length = 398 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 253/348 (72%), Positives = 287/348 (82%), Gaps = 1/348 (0%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TGL I G RV+V KR++NA +DVNQLLP+KY WAWEKYL+ CNNHWMPTEV MQ D Sbjct: 51 TGLEGIAQGAGRVDVSAKRIINATADVNQLLPMKYTWAWEKYLAGCNNHWMPTEVSMQAD 110 Query: 65 LALWKSKNG-LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 +ALWK ++G LT DER MI RNLGFFA++ESLVANNIVLAIY+ ++NPECRQYLLRQAFE Sbjct: 111 IALWKGRDGGLTADERAMIMRNLGFFATAESLVANNIVLAIYKQVTNPECRQYLLRQAFE 170 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EAVH+HTFQYI+ SLGL EGELFNMYRE+PSITAK WAL+YT+ L+ F T T Q Sbjct: 171 EAVHTHTFQYIVESLGLAEGELFNMYREIPSITAKDEWALKYTKNLADGDFDTSTTKGAQ 230 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 +FL+DL FYVVFEGMWFYTGFAQILSLGR NKM GIAEQYQYIMRDES+H+NFGIDVIN Sbjct: 231 DFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMTGIAEQYQYIMRDESIHMNFGIDVIN 290 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLWT++F+ + ML EA LEIAYA +TMP G +GLNA C +Y+ FIANRR Sbjct: 291 QIKIENPHLWTEDFKAEVTRMLKEAAELEIAYARDTMPHGLLGLNAEMCAEYLHFIANRR 350 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 C+QIGL LF NPFPWMSEVIDLKKEKNFFETRVT+YQ G L W Sbjct: 351 CNQIGLAELFPGATNPFPWMSEVIDLKKEKNFFETRVTDYQTGGALNW 398 >gi|330983931|gb|EGH82034.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. lachrymans str. M301315] Length = 388 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 213/342 (62%), Positives = 279/342 (81%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + + RV V K+M+NAR+DVNQL+P KY WAW+KYL C+NHWMP EV M D+ALWK Sbjct: 47 EGRQNRVQVGQKQMINARADVNQLVPFKYEWAWQKYLDGCSNHWMPQEVNMSADIALWKD 106 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 NGLTDDERL++KRNLG+F++++SLVANN+VLA+YR ++NPECRQY+LRQAFEEA+H+H Sbjct: 107 PNGLTDDERLILKRNLGYFSTADSLVANNLVLAVYRLITNPECRQYILRQAFEEAIHTHA 166 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +QY + SLGLD+GE+FNMY+EVPS+ KA W++++ ++ P+F TGT +AD FL++L Sbjct: 167 YQYCVESLGLDDGEIFNMYQEVPSVARKAAWSIKHMDAITDPAFQTGTVEADTTFLKNLI 226 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 +Y V EG++FY GF Q LS+GR NK+VG+AEQ+QYI+RDES+HLNFGID+INQIKIENP Sbjct: 227 AYYCVTEGIFFYCGFTQTLSMGRRNKLVGVAEQFQYILRDESMHLNFGIDMINQIKIENP 286 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 HLWT E ++++ M+ + T LEIAYA +TMP+G +G+NA E+Y+QFIANRR QIGL Sbjct: 287 HLWTDELKREATVMIIQGTQLEIAYARDTMPRGVLGMNAAMMEEYLQFIANRRLTQIGLP 346 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ++ +NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 347 EVYAGAKNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 388 >gi|284032753|ref|YP_003382684.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836] gi|283812046|gb|ADB33885.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836] Length = 354 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 259/353 (73%), Positives = 287/353 (81%), Gaps = 4/353 (1%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 T PI G RV V DK M+NAR+DVNQLLPLKY WAW+KYL+ACNNHWMPTEV MQ Sbjct: 2 TTTTPPIAVGATRVEVADKAMINARADVNQLLPLKYQWAWDKYLAACNNHWMPTEVSMQA 61 Query: 64 DLALWKS----KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 D+ALW+ K+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR LSNPECRQYLLR Sbjct: 62 DIALWRRPAGAKDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLSNPECRQYLLR 121 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAFEEAVH+HTFQYI TSLGLDEGELFNMYREVPSI AK WAL+YT+ L+ F TGT Sbjct: 122 QAFEEAVHTHTFQYICTSLGLDEGELFNMYREVPSIAAKDAWALKYTRHLTDGDFRTGTP 181 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 +AD +FL+DL FYVVFEGMWFYTGFAQIL LGR NKMVGIAEQYQYI+RDESLHLNFGI Sbjct: 182 EADTDFLRDLIAFYVVFEGMWFYTGFAQILVLGRRNKMVGIAEQYQYILRDESLHLNFGI 241 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 D INQIK+ENPHLWT FQ + R ML EA LE+AY T+P G +GL A CEQYM FI Sbjct: 242 DCINQIKLENPHLWTPAFQAEVRRMLTEACELEVAYGRATLPNGMLGLTAELCEQYMHFI 301 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +RR Q+GL PLF T NPF WMSEV+DLKKEKNFFETRV EYQ G L WD Sbjct: 302 TDRRAEQLGLAPLFGETRNPFGWMSEVMDLKKEKNFFETRVIEYQSGGGLSWD 354 >gi|114332419|ref|YP_748641.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas eutropha C91] gi|114309433|gb|ABI60676.1| Ribonucleoside-diphosphate reductase [Nitrosomonas eutropha C91] Length = 377 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 215/339 (63%), Positives = 272/339 (80%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M D+ALWK NG Sbjct: 39 HRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNG 98 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QY Sbjct: 99 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQY 158 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ S+GLDEGE+FN Y E+ SI K + + + TL++P+F TGT + DQ+ L+ L VF Sbjct: 159 IVESIGLDEGEIFNAYHEIKSIRDKDEFLIPFIDTLTNPTFQTGTLETDQQLLKSLIVFA 218 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG++FY GF QILSLGR NKM G AEQYQYI+RDES+H NFGIDVINQIK+ENPHLW Sbjct: 219 CIMEGLFFYVGFVQILSLGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKLENPHLW 278 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T+EF+++ ++ +A LE YA +TMP+G +GLNAP ++Y++FI NRR HQIGL+PLF Sbjct: 279 TREFREEISALMRKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRFIINRRSHQIGLDPLF 338 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 339 PEAGNPFPWMSEMVDLKKEKNFFETRVIEYQTGGVLSWD 377 >gi|119713586|gb|ABL97637.1| ribonucleotide-diphosphate reductase beta subunit [uncultured marine bacterium EB0_39H12] Length = 412 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 214/352 (60%), Positives = 274/352 (77%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + G ++ RV VDDK M+N R+D+NQL+P KY WAW+KYL NHWMP EV Sbjct: 61 LDAKAGEEELEGLAGRVQVDDKAMINCRADLNQLVPFKYDWAWQKYLDGSANHWMPQEVN 120 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ALWKS +GLT+DER ++ RNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ Sbjct: 121 MTADIALWKSNDGLTEDERTIVMRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQ 180 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 FEEA+H+H +QY I SLG+DEG +FNMYRE+PS+ KA+W L+YT+ +S P FTTGT + Sbjct: 181 GFEEAIHTHAYQYCIESLGMDEGAIFNMYREIPSVAKKASWGLKYTKEISDPGFTTGTDE 240 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 D+ L++L FY V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID Sbjct: 241 TDKLLLKNLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 300 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +INQIK+ENPHLW ++ + ++ M+ E T LEI YA +TMP+G +G+NA E+Y+QFIA Sbjct: 301 MINQIKLENPHLWDEQMRHEAAQMILEGTELEIQYARDTMPRGILGMNAGMMEEYLQFIA 360 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRR QIGLE F+ NPFPWMSE++DL+KEKNFFETRV EYQ G L WD Sbjct: 361 NRRLVQIGLEEEFEGASNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 412 >gi|264680215|ref|YP_003280125.1| ribonucleotide reductase [Comamonas testosteroni CNB-2] gi|262210731|gb|ACY34829.1| ribonucleotide reductase [Comamonas testosteroni CNB-2] Length = 336 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 206/336 (61%), Positives = 259/336 (77%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +N DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT+ Sbjct: 1 MNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLTE 60 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 61 DERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIVE 120 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 SLGLDE E+FN Y EV SI K + + + + + P+F TGT + DQ L+ L VF + Sbjct: 121 SLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFACLM 180 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT E Sbjct: 181 EGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTAE 240 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 F+Q+ + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF Sbjct: 241 FKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEELFPGE 300 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD Sbjct: 301 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 336 >gi|198284354|ref|YP_002220675.1| ribonucleotide-diphosphate reductase subunit beta [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248875|gb|ACH84468.1| Ribonucleoside-diphosphate reductase [Acidithiobacillus ferrooxidans ATCC 53993] Length = 374 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 201/338 (59%), Positives = 260/338 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP E+ M D+ALWK GL Sbjct: 37 ERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKGL 96 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQY+LRQAFEEA+H+H +QYI Sbjct: 97 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQYI 156 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + S+GLDEGE+FNMY EVPS+ K + + + L+ P F TGT + DQ+ L+ L VF Sbjct: 157 VESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLENDQKLLRSLIVFAA 216 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+ NQIK+ENP LWT Sbjct: 217 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENPQLWT 276 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + FQQ+ ++ LE AYA +TMP+G +GLNAP +Y+++I NRR Q+GL + Sbjct: 277 EAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIGNRRLVQLGLPQQYP 336 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +NPFPWMSE++DLKKEKNFFETRVTEYQ G L W+ Sbjct: 337 GVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 374 >gi|302877617|ref|YP_003846181.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans ES-2] gi|302580406|gb|ADL54417.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans ES-2] Length = 365 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 215/337 (63%), Positives = 271/337 (80%), Gaps = 1/337 (0%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R+ V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP EV M D+ALWKS + L+ Sbjct: 30 RIRVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEVNMTADIALWKS-DKLS 88 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 DDER +IKRNLGFF +++SL ANNIVL YRH++NPECRQ+LLRQAFEEA+H+H +QYI+ Sbjct: 89 DDERRLIKRNLGFFTTADSLAANNIVLGSYRHITNPECRQFLLRQAFEEAIHTHAYQYIV 148 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGLDEGE+FNMY EVPSI K + L Y L++P F TGT +ADQ L+ L VF + Sbjct: 149 ESLGLDEGEIFNMYHEVPSIRNKDEFLLPYIDVLTNPEFKTGTPEADQALLRSLIVFACI 208 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+HLNFG+D+INQIK+ENPHLWT Sbjct: 209 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHLNFGVDLINQIKMENPHLWTA 268 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 F+++ R ++ + LE AYA +TMP+G +GLNA ++Y++FIANRRC QIG++ L++ Sbjct: 269 AFREEIRGLMQKGVELEYAYAEDTMPRGILGLNATMFKEYLRFIANRRCQQIGVDILYQG 328 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWMSE+IDLKKEKNFFE+RVTEYQ G L WD Sbjct: 329 ATNPFPWMSEMIDLKKEKNFFESRVTEYQTGGTLSWD 365 >gi|218665361|ref|YP_002427016.1| ribonucleoside-diphosphate reductase, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|218517574|gb|ACK78160.1| ribonucleoside-diphosphate reductase, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 380 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 201/338 (59%), Positives = 260/338 (76%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP E+ M D+ALWK GL Sbjct: 43 ERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKGL 102 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQY+LRQAFEEA+H+H +QYI Sbjct: 103 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQYI 162 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + S+GLDEGE+FNMY EVPS+ K + + + L+ P F TGT + DQ+ L+ L VF Sbjct: 163 VESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLENDQKLLRSLIVFAA 222 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+ NQIK+ENP LWT Sbjct: 223 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENPQLWT 282 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + FQQ+ ++ LE AYA +TMP+G +GLNAP +Y+++I NRR Q+GL + Sbjct: 283 EAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIGNRRLVQLGLPQQYP 342 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +NPFPWMSE++DLKKEKNFFETRVTEYQ G L W+ Sbjct: 343 GVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 380 >gi|294339031|emb|CAZ87378.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside diphosphate reductase, beta subunit) [Thiomonas sp. 3As] Length = 410 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 208/346 (60%), Positives = 264/346 (76%), Gaps = 4/346 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 A RV +DKR++N DVNQL+P KY WAW+KYL++C NHWMP EV M D+A+WK Sbjct: 65 AASTARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEVNMSRDIAMWKD 124 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 NGLTDDERL+IKRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H Sbjct: 125 PNGLTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHA 184 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT----GTKDADQEFL 186 +QYI+ S+GLDE E+FN Y E+ SI K + + + TL++P F T G++ DQE L Sbjct: 185 YQYIVESIGLDESEIFNSYHEITSIREKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELL 244 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + VF + EG++FY GF QILS+GR NKM G AEQYQYI+RDES+H NFGID++NQIK Sbjct: 245 RSIIVFACLMEGLFFYVGFTQILSMGRQNKMTGAAEQYQYILRDESMHTNFGIDLVNQIK 304 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 +ENPHLWT EF+++ + H+A LE YA +TMP+G +GLNA + Y++FIANRR Q Sbjct: 305 LENPHLWTPEFKRELTGLFHQAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAVQ 364 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 IGL+ +F ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 365 IGLDAIFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWE 410 >gi|296135014|ref|YP_003642256.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12] gi|295795136|gb|ADG29926.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12] Length = 402 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 207/346 (59%), Positives = 264/346 (76%), Gaps = 4/346 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 A RV +DKR++N DVNQL+P KY WAW+KYL++C NHWMP E+ M D+A+WK Sbjct: 57 AASTARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEINMSRDIAMWKD 116 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 NGLTDDERL+IKRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H Sbjct: 117 PNGLTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHA 176 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT----GTKDADQEFL 186 +QYI+ S+GLDE E+FN Y E+ SI K + + + TL++P F T G++ DQE L Sbjct: 177 YQYIVESIGLDESEIFNSYHEIASIRDKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELL 236 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + VF + EG++FY GF QILS+GR NKM G AEQYQYI+RDES+H NFGID++NQIK Sbjct: 237 RSIIVFACLMEGLFFYVGFTQILSMGRQNKMTGAAEQYQYILRDESMHTNFGIDLVNQIK 296 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 +ENPHLWT EF+++ + H+A LE YA +TMP+G +GLNA + Y++FIANRR Q Sbjct: 297 LENPHLWTPEFKRELTGLFHQAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAVQ 356 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 IGL+ +F ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+ Sbjct: 357 IGLDAIFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWE 402 >gi|268316001|ref|YP_003289720.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM 4252] gi|262333535|gb|ACY47332.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM 4252] Length = 347 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 207/341 (60%), Positives = 271/341 (79%), Gaps = 3/341 (0%) Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 G +R+ V+DKR++N DVNQL+P+KY WAWE YL+ C NHWMP+E+PM D+ LW+S Sbjct: 8 GSRRIRVEDKRLINCHEVDVNQLMPIKYAWAWEHYLNGCKNHWMPSEIPMARDIELWRS- 66 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 + LTDDERL+I RNLGFFA++ESLV NNIVLAI+RH++NPECRQYLLRQAFEEA+H+H F Sbjct: 67 DKLTDDERLVILRNLGFFATAESLVGNNIVLAIFRHVTNPECRQYLLRQAFEEAIHTHAF 126 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 YI+ SLGLDEGE+FNMYRE+P++ K + ++ T+ + P FTT T + Q FL++L Sbjct: 127 LYIVESLGLDEGEVFNMYREIPAVARKDEFEMELTREVLRPDFTTATVEGAQAFLKNLIG 186 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 +YV+ EG++FY+GFA ILS R NKM GI EQ+QYI+RDE++HLNFGID+IN IK ENP Sbjct: 187 YYVIMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIKAENPE 246 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 LWT EFQ++ + ++ EA LE+AYA++ +P+G +GL AP +Y+Q+IA+RR +IGL+ Sbjct: 247 LWTPEFQREVQQLIEEAVELEVAYAYDCLPRGVLGLTAPMFREYVQYIADRRLERIGLKA 306 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 + ++NPFPWMSE IDL KEKNFFETRVTEYQQ A L WD Sbjct: 307 RYG-SKNPFPWMSETIDLLKEKNFFETRVTEYQQAAALSWD 346 >gi|166154172|ref|YP_001654290.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 434/Bu] gi|166155047|ref|YP_001653302.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335416|ref|ZP_07223660.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis L2tet1] gi|165930160|emb|CAP03644.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis 434/Bu] gi|165931035|emb|CAP06598.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 346 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 194/343 (56%), Positives = 259/343 (75%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F T + + QEF+++ Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E QQ+ ++ A LEI YA + +P+G +GL A Y+Q IA+RR +IG Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +T+NPFPWMSE IDL KEKNFFETRVTEYQ A L W Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346 >gi|112489977|pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide Reductase R2 From Chlamydia Trachomatis Length = 346 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 192/343 (55%), Positives = 258/343 (75%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HT+ YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F T + + QEF+++ Sbjct: 125 HTYLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E QQ+ ++ A LEI YA + +P+G +GL A Y+Q IA+RR +IG Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ A L W Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346 >gi|283779060|ref|YP_003369815.1| ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068] gi|283437513|gb|ADB15955.1| Ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068] Length = 357 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 193/335 (57%), Positives = 256/335 (76%), Gaps = 3/335 (0%) Query: 19 VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++KR++N + DVNQL+P+KY WAWE Y + C NHWMP+EVPM D+ W++ LTDD Sbjct: 25 AEEKRLINCSTVDVNQLMPIKYHWAWEHYQNGCANHWMPSEVPMGKDIETWRT-GSLTDD 83 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+L+I RNLGFF+++ESLV NN+VLAI+RH++NPECRQYLLRQAFEEA+H+HTF YI+ S Sbjct: 84 EKLVILRNLGFFSTAESLVGNNLVLAIFRHVTNPECRQYLLRQAFEEAIHTHTFLYIVES 143 Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 LGLD+ E+FNMYRE+PSI K + +Q T L P+FTT T + Q+FL++L +Y++ E Sbjct: 144 LGLDDREVFNMYREIPSIARKDAFEMQLTTGLLDPNFTTETAEGAQKFLENLIGYYLIME 203 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++FYTGF ILS R N+M GI EQ+QYI+RDE++HLNFGID+IN ++ ENP +WT +F Sbjct: 204 GIFFYTGFVMILSFHRQNRMTGIGEQFQYILRDETIHLNFGIDLINGVRAENPGIWTADF 263 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 Q++ ++ EA LE+AYA + +P+G VGLN Y+Q IA+RR +IGL + + Sbjct: 264 QERVIKLVREAVELEVAYAWDCLPRGIVGLNGELFRDYVQHIADRRLERIGLPTQYG-SA 322 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NPFPWMSE +DL KEKNFFETRVTEYQ A L WD Sbjct: 323 NPFPWMSETMDLGKEKNFFETRVTEYQSAASLAWD 357 >gi|15605563|ref|NP_220349.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis D/UW-3/CX] gi|255311668|ref|ZP_05354238.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 6276] gi|255317969|ref|ZP_05359215.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 6276s] gi|14195107|sp|O84835|RIR2_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|51247460|pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide Reductase From Chlamydia Trachomatis gi|3329298|gb|AAC68425.1| Ribonucleoside Reductase, Small Chain [Chlamydia trachomatis D/UW-3/CX] gi|296436383|gb|ADH18557.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/9768] gi|296437314|gb|ADH19484.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/11222] gi|296438242|gb|ADH20403.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/11074] gi|297140743|gb|ADH97501.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis G/9301] gi|297748957|gb|ADI51503.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis D-EC] gi|297749837|gb|ADI52515.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis D-LC] Length = 346 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 193/343 (56%), Positives = 258/343 (75%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F T + + QEF+++ Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E QQ+ ++ A LEI YA + +P+G +GL A Y+Q IA+RR +IG Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ A L W Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346 >gi|76789573|ref|YP_328659.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis A/HAR-13] gi|237803260|ref|YP_002888454.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis B/Jali20/OT] gi|237805181|ref|YP_002889335.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis B/TZ1A828/OT] gi|255349232|ref|ZP_05381239.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 70] gi|255503769|ref|ZP_05382159.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis 70s] gi|255507450|ref|ZP_05383089.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis D(s)2923] gi|76168103|gb|AAX51111.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis A/HAR-13] gi|231273481|emb|CAX10397.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis B/TZ1A828/OT] gi|231274494|emb|CAX11290.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis B/Jali20/OT] gi|289525874|emb|CBJ15356.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia trachomatis Sweden2] gi|296435459|gb|ADH17637.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis E/150] gi|296439176|gb|ADH21329.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia trachomatis E/11023] Length = 346 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 193/343 (56%), Positives = 258/343 (75%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F T + + QEF+++ Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E QQ+ ++ A LEI YA + +P+G +GL A Y+Q IA+RR +IG Sbjct: 245 NPGIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ A L W Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346 >gi|15834835|ref|NP_296594.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum Nigg] gi|270285001|ref|ZP_06194395.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum Nigg] gi|270289024|ref|ZP_06195326.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum Weiss] gi|301336399|ref|ZP_07224601.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia muridarum MopnTet14] gi|14195147|sp|Q9PL92|RIR2_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|7190253|gb|AAF39087.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydia muridarum Nigg] Length = 346 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 196/343 (57%), Positives = 258/343 (75%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+ M D+ LW Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMGKDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-NVLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E SI AK ++ ++ T + P+F T + + QEF+++ Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERASIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFIKN 184 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKMVGI EQYQYI+RDE++HLNFG+D+IN IK E Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMVGIGEQYQYILRDETIHLNFGVDLINGIKEE 244 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E QQ+ M+ A LEI YA + +P+G +GL A Y+Q IA+RR +IG Sbjct: 245 NPEIWTTELQQEIIEMIQRAVDLEIDYARDCLPRGILGLRASMFIDYVQHIADRRLERIG 304 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +T+NPFPWMSE IDL KEKNFFETRVTEYQ A L W Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346 >gi|325110864|ref|YP_004271932.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305] gi|324971132|gb|ADY61910.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305] Length = 353 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 198/344 (57%), Positives = 256/344 (74%), Gaps = 3/344 (0%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + A R +KR++N + DVNQL+P+KY WAWE YL+ C NHWMPTEVPM D+ +W Sbjct: 12 LDAPTGRFKASEKRLINCAQVDVNQLMPIKYAWAWEHYLNGCANHWMPTEVPMTKDIEVW 71 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L+DDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLLRQAFEEAVH+ Sbjct: 72 KS-NKLSDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLLRQAFEEAVHT 130 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF Y++ SLGL EGE+FNMY EVP+I K + ++ T + S FTT T + Q FL++ Sbjct: 131 HTFLYVVDSLGLHEGEVFNMYHEVPAIARKDEFEMKLTAEVLSEDFTTETYEGRQTFLRN 190 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FYTGF ILS R N + GI EQ+QYI+RDE+ HLNFGID+IN IK E Sbjct: 191 LIGYYLIMEGIFFYTGFVMILSFHRRNLLTGIGEQFQYILRDETTHLNFGIDLINGIKHE 250 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT++FQQ+ ++ EA LEI YA + +P+G +GLN Y+Q IA+RR +IG Sbjct: 251 NPDIWTEKFQQEIIDLVKEAVELEIDYARDCLPRGVLGLNGNLFRDYVQHIADRRLERIG 310 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 L L+ + NPFPWMSE +DL KEKNFFETRVTEYQ G L WD Sbjct: 311 LPTLYN-SSNPFPWMSETMDLAKEKNFFETRVTEYQTGGTLSWD 353 >gi|29840533|ref|NP_829639.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila caviae GPIC] gi|29834882|gb|AAP05517.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila caviae GPIC] Length = 346 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 189/343 (55%), Positives = 258/343 (75%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + KRV ++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 6 LGGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-NDLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDEGE+FN Y E +I AK ++ + T + +P+F+T + + ++F+++ Sbjct: 125 HTFLYICESLGLDEGEVFNAYNERATIKAKDDFQMTLTVDVLNPNFSTDSVEGLRQFIKN 184 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 244 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +W++E Q + ++ +A LEI YA + +P+G +GL + Y++ IA+RR +IG Sbjct: 245 NPEVWSQELQDEIIALIQKAVDLEIEYAKDCLPRGILGLKSSMFIDYVRHIADRRLERIG 304 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ Y++NPFPWMSE IDL KEKNFFETRVTEYQ L W Sbjct: 305 LKPIY-YSKNPFPWMSETIDLNKEKNFFETRVTEYQTSGNLSW 346 >gi|62185356|ref|YP_220141.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila abortus S26/3] gi|62148423|emb|CAH64191.1| putative ibonucleoside reductase small subunit [Chlamydophila abortus S26/3] Length = 349 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 188/343 (54%), Positives = 254/343 (74%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N DVNQL+P+KY WAWE Y++ C N W+PTEVPM D+ LW Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYVNGCANTWLPTEVPMARDIELW 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 69 KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F+T + + +F+++ Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 187 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E Q + ++ +A LEI YA + +P+G +GL A Y++ IA+RR +IG Sbjct: 248 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 307 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ A L W Sbjct: 308 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 349 >gi|329943118|ref|ZP_08291892.1| ribonucleotide reductase, small chain family protein [Chlamydophila psittaci Cal10] gi|332287701|ref|YP_004422602.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC] gi|325507260|gb|ADZ18898.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC] gi|328814665|gb|EGF84655.1| ribonucleotide reductase, small chain family protein [Chlamydophila psittaci Cal10] gi|328914953|gb|AEB55786.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila psittaci 6BC] Length = 346 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 189/343 (55%), Positives = 255/343 (74%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 6 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 66 KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F+T + + +F+++ Sbjct: 125 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 184 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 244 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E Q + ++ +A LEI YA + +P+G +GL A Y++ IA+RR +IG Sbjct: 245 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 304 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ A L W Sbjct: 305 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 346 >gi|89898045|ref|YP_515155.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila felis Fe/C-56] gi|89331417|dbj|BAE81010.1| ribonucleoside-diphosphate reductase beta chain [Chlamydophila felis Fe/C-56] Length = 349 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 188/343 (54%), Positives = 258/343 (75%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIDLW 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 69 KS-NELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEVRQYLLRQAFEEAVHT 127 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E +I AK ++ + T+ + P+F+T T + ++F+++ Sbjct: 128 HTFLYICESLGLDESEVFNAYNERATIKAKDDFQMDLTRDVLDPNFSTHTIENLRQFIKN 187 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +W+++ Q + ++ +A LEI YA + +P+G +GL + Y++ IA+RR +IG Sbjct: 248 NPEVWSQQLQDEIVDLIQKAVDLEIEYARDCLPRGILGLRSSMFIDYVRHIADRRLERIG 307 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ ++NPFPWMSE IDL KEKNFFETRVTEYQ A L W Sbjct: 308 LKPIYN-SKNPFPWMSETIDLNKEKNFFETRVTEYQTAANLNW 349 >gi|33242353|ref|NP_877294.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae TW-183] gi|33236864|gb|AAP98951.1| ribonucleoside reductase small chain [Chlamydophila pneumoniae TW-183] Length = 365 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 187/338 (55%), Positives = 251/338 (74%), Gaps = 3/338 (0%) Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV V K ++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LWKS + Sbjct: 30 KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 88 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y Sbjct: 89 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 148 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I SLGLDEGE+FN Y E SI AK ++ + T + P+F+ + + +F+++L +Y Sbjct: 149 ICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKNLVGYY 208 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W Sbjct: 209 IIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 268 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T E Q++ ++ +A LEI YA + +P+G +GL + Y++ IA+RR +IGL+P++ Sbjct: 269 TTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIGLKPIY 328 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 ++ NPFPWMSE +DL KEKNFFETRVTEYQ L W Sbjct: 329 -HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 365 >gi|313848275|emb|CBY17276.1| putative ibonucleoside reductase small subunit [Chlamydophila psittaci RD1] Length = 349 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 189/343 (55%), Positives = 255/343 (74%), Gaps = 3/343 (0%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 ++ KRV ++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ Sbjct: 69 KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F+T + + +F+++ Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 187 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT E Q + ++ +A LEI YA + +P+G +GL A Y++ IA+RR +IG Sbjct: 248 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 307 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ A L W Sbjct: 308 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 349 >gi|167837963|ref|ZP_02464822.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis MSMB43] Length = 303 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 191/303 (63%), Positives = 238/303 (78%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 C NHWMP E+ M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ Sbjct: 1 CANHWMPQEINMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHIT 60 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I AK + + + TL Sbjct: 61 APECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRAKDEFLIPFIHTL 120 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 + P+FTTGT +ADQ+ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+R Sbjct: 121 TDPAFTTGTLEADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILR 180 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DES+H NFGID+INQIK+ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA Sbjct: 181 DESMHCNFGIDLINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNA 240 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 + Y++FI+NRRC QIGL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L Sbjct: 241 SMFKSYLRFISNRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGAL 300 Query: 350 KWD 352 W+ Sbjct: 301 SWE 303 >gi|269839640|ref|YP_003324332.1| ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC BAA-798] gi|269791370|gb|ACZ43510.1| Ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC BAA-798] Length = 353 Score = 367 bits (942), Expect = 1e-99, Method: Composition-based stats. Identities = 198/339 (58%), Positives = 253/339 (74%), Gaps = 3/339 (0%) Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +R+ V+DKR++N ++ DVNQL PLKY WAWE YL+ C NHWMPTEVPM D+ LW+S N Sbjct: 17 QRIRVEDKRLINCKAVDVNQLWPLKYAWAWEHYLNGCANHWMPTEVPMHKDIELWRS-NA 75 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT DERL+I RNLGFF++ ESLV NNIVLAI++H++NPE RQYLLRQAFEEA+H+H F Y Sbjct: 76 LTPDERLVIMRNLGFFSTGESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAIHTHAFHY 135 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGLD E+FNMYREV SI K + + T+ + P FTT T + Q+F+++L FY Sbjct: 136 IVESLGLDGREVFNMYREVDSIKGKDEFVMSLTERVLDPDFTTETLEGIQDFIRNLVGFY 195 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 V+ EG++FY+GF ILS R N+M GI EQ+QYI+RDE++HLNFGID+IN IK ENP W Sbjct: 196 VIMEGIFFYSGFVMILSFHRQNRMTGIGEQFQYILRDETVHLNFGIDLINTIKEENPEAW 255 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T+E ++ M+ +A EIAYA E +P G +GLNA +Y+Q+IA+RR +I L + Sbjct: 256 TEELRRDLVGMIRQAVEYEIAYARECLPNGVLGLNADLFREYVQYIADRRLERIELPVQY 315 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 + NPFPWMSE +DL KEKNFFETRVTEYQ L WD Sbjct: 316 -RSRNPFPWMSETMDLPKEKNFFETRVTEYQNAGTLVWD 353 >gi|15618893|ref|NP_225179.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae CWL029] gi|15836516|ref|NP_301040.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae J138] gi|16752043|ref|NP_445409.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila pneumoniae AR39] gi|14195165|sp|Q9Z6S4|RIR2_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|4377313|gb|AAD19122.1| Ribonucleoside Reductase, Small Chain [Chlamydophila pneumoniae CWL029] gi|7189783|gb|AAF38660.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila pneumoniae AR39] gi|8979358|dbj|BAA99192.1| ribonucleoside reductase, small chain [Chlamydophila pneumoniae J138] gi|269302786|gb|ACZ32886.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila pneumoniae LPCoLN] Length = 346 Score = 367 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 187/338 (55%), Positives = 251/338 (74%), Gaps = 3/338 (0%) Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV V K ++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LWKS + Sbjct: 11 KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 69 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 129 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I SLGLDEGE+FN Y E SI AK ++ + T + P+F+ + + +F+++L +Y Sbjct: 130 ICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKNLVGYY 189 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 249 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T E Q++ ++ +A LEI YA + +P+G +GL + Y++ IA+RR +IGL+P++ Sbjct: 250 TTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIGLKPIY 309 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 ++ NPFPWMSE +DL KEKNFFETRVTEYQ L W Sbjct: 310 -HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 346 >gi|330443801|ref|YP_004376787.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydophila pecorum E58] gi|328806911|gb|AEB41084.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila pecorum E58] Length = 346 Score = 365 bits (938), Expect = 4e-99, Method: Composition-based stats. Identities = 187/338 (55%), Positives = 256/338 (75%), Gaps = 3/338 (0%) Query: 15 KRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV++++KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+ M D+ LWKS NG Sbjct: 11 KRVHINNKRLVNCSQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMARDIELWKS-NG 69 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ TF Y Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTQTFLY 129 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I SL LDE E+FN Y E SI AK ++ + T + P+F+T + + ++F+++L +Y Sbjct: 130 ICESLSLDEAEVFNAYNERESIKAKDDFQMTLTVDVLDPNFSTDSIEGLRKFIKNLVGYY 189 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W Sbjct: 190 LIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 249 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +KE Q++ ++ A LEI YA + +PKG +GL + Y++ IA+RR +IGL+P++ Sbjct: 250 SKELQEEIIALIETAVGLEIDYAKDCLPKGILGLKSSMFIDYVRHIADRRLERIGLKPIY 309 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 ++NPFPWMSE +DL KEKNFFETRVTEYQ A L W Sbjct: 310 N-SKNPFPWMSETMDLNKEKNFFETRVTEYQTAASLSW 346 >gi|298243909|ref|ZP_06967716.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM 44963] gi|297556963|gb|EFH90827.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM 44963] Length = 361 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 196/350 (56%), Positives = 254/350 (72%), Gaps = 3/350 (0%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NT + KR++N DVNQL+PLKY WAWE YL+ C NHWMPTEVPM Sbjct: 14 NTTSTANTPPASEQQAQKKRLINGWHVDVNQLMPLKYRWAWEHYLNGCANHWMPTEVPMT 73 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ W+S N LT ERL+I RNLGFFA++ESLV NN+VLAI++H++N ECRQYLLRQAF Sbjct: 74 KDIETWRS-NKLTAGERLVIMRNLGFFATAESLVGNNLVLAIFKHITNAECRQYLLRQAF 132 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEA+H+HTF YI+ SLGL E E+FNMY E+PSI K + +Q T + P F+T T + Sbjct: 133 EEAIHTHTFLYIVESLGLSEHEVFNMYHEIPSIKEKDEFEMQLTSAVLDPDFSTETFEGM 192 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 Q+FLQ+L +Y++ EG++FY+GF +LS R N M G+ EQ+QYI+RDE++HLNFGID+I Sbjct: 193 QKFLQNLIGYYIIMEGIFFYSGFVMMLSFHRRNLMTGVGEQFQYILRDETIHLNFGIDLI 252 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 N IK ENP LWT EFQ ++ A LEIAYA++ +P G +GLNA S Y+Q +A+R Sbjct: 253 NGIKAENPELWTTEFQAHIYDLIKRAVELEIAYAYDCLPNGILGLNAESFRSYVQHVADR 312 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 R +IGL P+F ++ +PFPWMSE +DL KEKNFFETRVTEYQ + L+W+ Sbjct: 313 RLERIGLAPIF-HSSHPFPWMSETMDLSKEKNFFETRVTEYQAASTLEWE 361 >gi|149173739|ref|ZP_01852368.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces maris DSM 8797] gi|148847269|gb|EDL61603.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces maris DSM 8797] Length = 359 Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 198/356 (55%), Positives = 249/356 (69%), Gaps = 7/356 (1%) Query: 2 ANNTGLSPI----QAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMP 56 AN +P+ R D KR++N + DVNQL+PLKY WAWE YL+ C NHWMP Sbjct: 6 ANTNSKTPVSPVGDTPTGRFKADKKRLINCSQVDVNQLMPLKYHWAWEHYLNGCANHWMP 65 Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 TEV M D+ W+S + L++ ER +I RNLGFFA++ESLVANNIVLAI++H++N ECRQY Sbjct: 66 TEVGMTKDIETWRS-SKLSEGERFVIMRNLGFFATAESLVANNIVLAIFKHVTNAECRQY 124 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176 LLRQAFEEAVHSHTF YI+ SLGL+E E+FNMY EVP+I K ++ T + FTT Sbjct: 125 LLRQAFEEAVHSHTFLYIVESLGLNESEVFNMYHEVPAIAKKDQLEMELTSEILDHDFTT 184 Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236 T + Q FL++L +Y++ EG++FYTGF +LS R N M GI EQ+QYI+RDE++HLN Sbjct: 185 DTFEGAQAFLKNLIGYYLIMEGLFFYTGFVMVLSFHRRNMMTGIGEQFQYILRDETIHLN 244 Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296 FGID+IN IK ENP LWT EFQQ + A LEI YA + +P G +GLN +Y+ Sbjct: 245 FGIDLINGIKQENPDLWTPEFQQLIIDRMKYAAELEIEYAKDCLPTGILGLNGELFREYV 304 Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q IA+RR +IGL + + NPFPWMSE +DL KEKNFFETRVTEYQ L WD Sbjct: 305 QHIADRRLERIGLPAQYG-SANPFPWMSETMDLSKEKNFFETRVTEYQSSGSLNWD 359 >gi|159899093|ref|YP_001545340.1| ribonucleotide-diphosphate reductase subunit beta [Herpetosiphon aurantiacus ATCC 23779] gi|159892132|gb|ABX05212.1| Ribonucleoside-diphosphate reductase [Herpetosiphon aurantiacus ATCC 23779] Length = 342 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 192/339 (56%), Positives = 252/339 (74%), Gaps = 3/339 (0%) Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 R N DKR++N DVNQL+PL+YGWAWE YL+ C NHWMP EV M D+A+W+S Sbjct: 6 GRFNASDKRLINCNQVDVNQLMPLRYGWAWEHYLNGCANHWMPNEVSMTGDIAIWRS-TS 64 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L+ DERLM+ RNLGFFA++ESLV NNIVLAI+RH++N ECRQYLLRQAFEEA+H+H F + Sbjct: 65 LSADERLMVLRNLGFFATAESLVGNNIVLAIFRHITNAECRQYLLRQAFEEAIHTHAFLH 124 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I+ SLGL+E E+FNMY E+P I+ K + +Q T + P F+T T Q F+++L +Y Sbjct: 125 IVESLGLNEREIFNMYHEIPVISQKDQFEMQLTAAVLDPQFSTETLTGMQTFVKNLIGYY 184 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 V+ EG++FY+GFA +LSL R N + GI EQ QYI+RDE++HLNFG+D+IN IK ENP +W Sbjct: 185 VIMEGIFFYSGFAMLLSLHRRNVLTGIGEQIQYILRDETIHLNFGVDLINGIKAENPAIW 244 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T EFQ + ++ ++ LE YA E +P+G +GL+A Y+Q+IA+RR +IGL + Sbjct: 245 TNEFQAEIVQLIRQSVELEAQYAAECLPRGVMGLHAAMFRDYVQYIADRRLQRIGLAIQY 304 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ++NPFPWMSE IDL KEKNFFETRVTEYQ A L+WD Sbjct: 305 G-SQNPFPWMSETIDLTKEKNFFETRVTEYQSAASLEWD 342 >gi|297621807|ref|YP_003709944.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia chondrophila WSU 86-1044] gi|297377108|gb|ADI38938.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia chondrophila WSU 86-1044] Length = 344 Score = 355 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 193/340 (56%), Positives = 255/340 (75%), Gaps = 5/340 (1%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 R D K+++N DVNQLLPLKY WAWE YL+ C NHWMP+EVPM D+ WKS + Sbjct: 9 TGRFRSDQKKLINCSEVDVNQLLPLKYKWAWEHYLNGCANHWMPSEVPMTKDIETWKS-D 67 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 +++DERL+IKRNLGFFA++ESLVANN+VLAI++H++N ECRQYLLRQAFEEA+HSH F Sbjct: 68 SISEDERLLIKRNLGFFATAESLVANNLVLAIFKHVTNAECRQYLLRQAFEEALHSHAFL 127 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI+ SLGL+E E+FNMYRE+ +I+ K + +Q T+ L T T Q+FL++L + Sbjct: 128 YIVDSLGLEEQEIFNMYREISTISEKDEFEMQLTKGLIDG--ETKTLAGKQQFLKNLVGY 185 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 Y++ EG++FY+GFA +LSL R N M GI EQ+QYI+RDE++HLNFGID+IN IK ENP + Sbjct: 186 YIIMEGIFFYSGFAMVLSLHRRNIMPGIGEQFQYILRDETIHLNFGIDLINGIKAENPEI 245 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 W ++ + ++ +A LEIAYA E +P G +GLNA +Y+Q++A+RR +IGL + Sbjct: 246 WNEDLTDEINGLVQQAVELEIAYAKECLPHGVLGLNAGLFVEYVQYVADRRLERIGLSAI 305 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +K + NPFPWMSE +DL KEKNFFETRVTEYQ A L WD Sbjct: 306 YK-SSNPFPWMSETMDLTKEKNFFETRVTEYQSAAVLSWD 344 >gi|189219089|ref|YP_001939730.1| ribonucleotide-diphosphate reductase subunit beta [Methylacidiphilum infernorum V4] gi|189185947|gb|ACD83132.1| Ribonucleotide reductase, beta subunit [Methylacidiphilum infernorum V4] Length = 361 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 194/339 (57%), Positives = 262/339 (77%), Gaps = 3/339 (0%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +KR+NV++KR++N ++ DVNQL+PLKY WAWE YL+ C N+W+P+EVPMQ D+ LWKS N Sbjct: 25 KKRINVEEKRLINCKAVDVNQLMPLKYKWAWEHYLNGCANNWLPSEVPMQRDVELWKS-N 83 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L++DERL+I RNLGFFA+ ESLV NNIVLAI++ ++N E RQYLLRQA+EEAVH+H F Sbjct: 84 RLSNDERLVIMRNLGFFATGESLVGNNIVLAIFKFVTNAEARQYLLRQAYEEAVHTHAFL 143 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI+ SLGLDE E+FNMY EV SI+ K + + T+ + F T + + Q+F+++L F Sbjct: 144 YIVESLGLDEREVFNMYHEVNSISNKDQFEMTLTEDILREGFNTESVENIQKFVKNLVGF 203 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 YV+ EG++FY+GFA ILS R NKM GI EQ+QYI+RDE++HLNFGID+IN I+ ENP + Sbjct: 204 YVIMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIREENPEI 263 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 WT FQ++ M+ E+ LE AYA + +P+G +GLN+ + Y+++IA+RR +IG + Sbjct: 264 WTAGFQKEIEEMIDESVRLEYAYARDCLPRGILGLNSALFKDYVEYIADRRLERIGFKAK 323 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 + ++NPFPWMSEV+DL KEKNFFETRVTEYQ GA L W Sbjct: 324 YG-SKNPFPWMSEVMDLVKEKNFFETRVTEYQSGAVLNW 361 >gi|297668213|ref|XP_002812343.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Pongo abelii] Length = 449 Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 158/346 (45%), Gaps = 28/346 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + +V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 116 AEPKTKAAAPDVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 175 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 176 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 232 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D E FN +P + KA+WAL++ + Sbjct: 233 SEMYSLLIDTYIKDPKEREFLFNAIETLPCVKKKADWALRWI-------------GDKEA 279 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 280 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 338 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL K +++ R ++ A +E + E +P +G+N +QY++F+A+R Sbjct: 339 ------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 392 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 393 LELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 436 >gi|260064013|ref|NP_001159403.1| ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Homo sapiens] Length = 449 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 157/346 (45%), Gaps = 28/346 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 116 TEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 175 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 176 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 232 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D E FN +P + KA+WAL++ + Sbjct: 233 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEA 279 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 280 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 338 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL K +++ R ++ A +E + E +P +G+N +QY++F+A+R Sbjct: 339 ------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 392 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 393 LELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 436 >gi|119621373|gb|EAX00968.1| hCG23833, isoform CRA_b [Homo sapiens] gi|119621374|gb|EAX00969.1| hCG23833, isoform CRA_b [Homo sapiens] Length = 449 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 157/346 (45%), Gaps = 28/346 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 116 TEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 175 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 176 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 232 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D E FN +P + KA+WAL++ + Sbjct: 233 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEA 279 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 280 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 338 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL K +++ R ++ A +E + E +P +G+N +QY++F+A+R Sbjct: 339 ------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 392 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 393 LELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 436 >gi|282890382|ref|ZP_06298910.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499764|gb|EFB42055.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 350 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 199/339 (58%), Positives = 253/339 (74%), Gaps = 3/339 (0%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E KR+LN + DVNQL+PLKY WAWE YL+ C+N+WMP+EVPMQ D+ LWKS N Sbjct: 14 EAEAAAQQKRILNCKQVDVNQLMPLKYHWAWEHYLNGCHNNWMPSEVPMQKDIELWKS-N 72 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L++DERL+I RNLGFF+++ESLV NNIVLAI++HL+N E RQYLLRQAFEEAVH+HTF Sbjct: 73 RLSNDERLVIMRNLGFFSTAESLVGNNIVLAIFKHLTNAEARQYLLRQAFEEAVHTHTFH 132 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 YI+ SL LD+ E+F+MY V SI AK + ++ T+ + FTT T + Q FL++L F Sbjct: 133 YIVESLSLDQREVFDMYNAVNSIHAKDAFEMKLTEEVMQEGFTTDTPEGVQTFLKNLIGF 192 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 Y++ EG++FY+GF ILS R N M GI EQ+QYI+RDES+HLNFGID+IN IK ENP + Sbjct: 193 YIIMEGIFFYSGFVMILSFHRKNIMTGIGEQFQYILRDESIHLNFGIDLINTIKEENPEV 252 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 WT EF+ + M+ EA LEI YA + +P G +GLNA Y+ +IA+RR +IGL+P Sbjct: 253 WTPEFKDQIIDMVKEAVELEIQYAADCLPNGILGLNAALFRDYVGYIADRRLERIGLKPQ 312 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 + T NPFPWMSEV+DL KEKNFFETRVT+YQ GA L W Sbjct: 313 YN-TANPFPWMSEVMDLDKEKNFFETRVTQYQSGAALVW 350 >gi|325181522|emb|CCA15972.1| ribonucleosidediphosphate reductase small chain put [Albugo laibachii Nc14] Length = 1611 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 88/352 (25%), Positives = 162/352 (46%), Gaps = 28/352 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 ++++ ++P + E + + L + L P++ W+ Y A + W E+ Sbjct: 49 LSDSNSITPFKEKEMNGQLLPEPFLRENPNRFVLFPIQQSEIWDMYKKAEASFWTAEEID 108 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D+ W ++D+ER IK L FFA+S+ +V N+ + + PE R + Q Sbjct: 109 LVHDMNDW---LNISDNERHFIKHVLAFFAASDGIVNENLAMNFSSEVQIPEARCFYGFQ 165 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFN---MYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS + +I + D E + +P +T KA WAL++ Sbjct: 166 IAIENIHSEVYSLLIDTYIKDPTEKQHLLCAIETIPCVTNKAQWALKWC----------- 214 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 D + V + EG++F F I L + M G+ + I RDE LH +F Sbjct: 215 --DPKCASFAERVVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLCFSNELISRDEGLHCDF 272 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + +++ + P ++ +A ++E + +++P +G+N+ QY++ Sbjct: 273 ACLMYSKLVNKLPE-------ASIHAIISDAVVIEQEFVRDSLPVELIGMNSSLMGQYIE 325 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 F+A+R H +G+ L+ +T NPF WM +I L+ + NFFE RV EY + + Sbjct: 326 FVADRLLHALGVSKLY-HTSNPFDWMD-MISLQGKTNFFEKRVGEYAKSGTI 375 >gi|332247268|ref|XP_003272775.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 1 [Nomascus leucogenys] Length = 434 Score = 348 bits (893), Expect = 7e-94, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 157/346 (45%), Gaps = 28/346 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 101 AEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 160 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 161 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 217 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D E FN +P + KA+WAL++ + Sbjct: 218 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEA 264 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 265 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 323 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL K +++ R ++ A +E + E +P +G+N +QY++F+A+R Sbjct: 324 ------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCILMKQYIEFVADRLM 377 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 378 LELGFGKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 421 >gi|126303832|ref|XP_001381111.1| PREDICTED: similar to hCG23833, [Monodelphis domestica] Length = 493 Score = 348 bits (892), Expect = 9e-94, Method: Composition-based stats. Identities = 91/351 (25%), Positives = 157/351 (44%), Gaps = 28/351 (7%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 ++ + +D+ +L + P++Y W Y A + W EV + Sbjct: 155 PTEPVTKAPNEPASPSKEDEPLLRENPRRFVIFPIEYHDIWHMYKKAEASFWTAEEVDLS 214 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ W++ L +E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 215 KDIQHWET---LKSEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIA 271 Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E +HS + +I + D E FN +P + KA+WAL++ Sbjct: 272 MENIHSEMYSLLIDTYIKDPKEREFLFNAIETLPCVKKKADWALRWI------------- 318 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 ++ + V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 319 GDNEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 378 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + HL K ++K + ++ A +E + E +P +G+N +QY++F+ Sbjct: 379 LMFK-------HLVHKPSEEKVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFV 431 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 A+R ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 432 ADRLMLELGFSKIF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 480 >gi|330921941|ref|XP_003299625.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1] gi|311326599|gb|EFQ92269.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1] Length = 410 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 157/351 (44%), Gaps = 27/351 (7%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A+ + P A + D+ +L L P+KY W+ Y A + W E+ + Sbjct: 52 ADAEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 111 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W + L DDER I L FFA+S+ +V N+V + PE R + Q Sbjct: 112 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYGFQI 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E VHS T+ +I + + + FN +P I KA+WAL++ Sbjct: 170 MMENVHSETYSLLIDTYISEPRQRKYLFNAIDNIPCIRKKADWALRWI------------ 217 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + V + EG++F FA I L + M G+ + I RDE +H +F Sbjct: 218 -SDKNSTFANRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFA 276 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + L + ++ R ++ EA +E + + +P +G+NA QY++F Sbjct: 277 CLLFSL-------LNNRPSKESVRAIITEAVEIEQEFLSDALPCALLGMNATLMCQYIEF 329 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +A+R +G ++ T NPF +M E I L + NFFE RV +YQ+ + Sbjct: 330 VADRLLLALGNTKVYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 378 >gi|189199548|ref|XP_001936111.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187983210|gb|EDU48698.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 410 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 158/351 (45%), Gaps = 27/351 (7%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A++ + P A + D+ +L L P+KY W+ Y A + W E+ + Sbjct: 52 ADDEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 111 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W + L DDER I L FFA+S+ +V N+V + PE R + Q Sbjct: 112 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYGFQI 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E VHS T+ +I + D + FN +P I KA+WAL++ Sbjct: 170 MMENVHSETYSLLIDTYISDTRQRKYLFNAIENIPCIRKKADWALRWI------------ 217 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + V + EG++F FA I L + M G+ + I RDE +H +F Sbjct: 218 -SDKNSTFANRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFA 276 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + L + ++ R ++ EA +E + + +P +G+NA QY++F Sbjct: 277 CLLFSL-------LNNRPSNEEVRAIITEAVEIEQEFLSDALPCALLGMNATLMCQYIEF 329 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +A+R +G ++ T NPF +M E I L + NFFE RV +YQ+ + Sbjct: 330 VADRLLLALGNTKVYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 378 >gi|289177074|ref|NP_001165948.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 2 [Homo sapiens] Length = 423 Score = 341 bits (876), Expect = 6e-92, Method: Composition-based stats. Identities = 99/350 (28%), Positives = 163/350 (46%), Gaps = 28/350 (8%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 G S E + +++ +L S + P++Y W+ Y A + W EV + Sbjct: 85 PQAGRSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 144 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 145 KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 201 Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E VHS + +I + D + FN +P + KA+WAL++ Sbjct: 202 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD----------- 250 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + + V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 251 --RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 308 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + L K +++ R ++ +A +E + E +P G +G+N +QY++F+ Sbjct: 309 LMFQY-------LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFV 361 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 A+R ++G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 362 ADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 409 >gi|298713498|emb|CBJ27053.1| Ribonucleoside-diphosphate reductase small chain [Ectocarpus siliculosus] Length = 504 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 88/328 (26%), Positives = 149/328 (45%), Gaps = 29/328 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + + A L P+K+ W+ Y A + W EV + D W+ LT +E+ Sbjct: 181 EPICRADPSRFVLFPIKHPELWDMYKKAKASFWTVEEVDLSQDSRDWE---ALTGNEQHF 237 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+V + + PE R + Q E++H + ++ + D Sbjct: 238 ISMVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKD 297 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E FN Y ++P + KA+WA+++ + V + EG Sbjct: 298 KQERDNLFNAYNDIPCVKQKADWAMRWI--------------GSDATFAERLVAFAAVEG 343 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE LH +F + L K + Sbjct: 344 VFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACQLF-------ASLENKPSR 396 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + ++ EA +E ++ +P +G+NA QY++F+A+R +G + T+N Sbjct: 397 ETVMAIVREAVEVEKSFICGALPCSLIGMNAGVMSQYIEFVADRLLGSLGYGKSYG-TQN 455 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346 PF WM +I L+ + NFFE RV EYQ+ Sbjct: 456 PFDWMD-LISLQGKTNFFEKRVGEYQKA 482 >gi|225684487|gb|EEH22771.1| ribonucleoside-diphosphate reductase small chain A [Paracoccidioides brasiliensis Pb03] Length = 413 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 96/356 (26%), Positives = 162/356 (45%), Gaps = 32/356 (8%) Query: 2 ANNTGLSPIQAGEK-----RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56 ++ T + P++ +K + D+ +L L PLKY W+ Y A + W Sbjct: 54 SDATPVKPVEQEKKIGSTAKDLEADEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTA 113 Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 E+ + DL W N L DDER I L FFA+S+ +V N+V + PE R + Sbjct: 114 EEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCF 171 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173 Q E +HS T+ +I + + + F+ +P I KA+WA+++ Sbjct: 172 YGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWI------- 224 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 + + V + EG++F FA I L + M G+ + I RDE L Sbjct: 225 ------EDKESTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 278 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293 H +F + + HL + + + ++ EA +E + + +P +G+NA Sbjct: 279 HTDFACLLFS-------HLRHRPSPEAVQKIITEAVAIEQEFLTDALPCALLGMNAKLMC 331 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 QY++F+A+R +G + ++ T NPF +M I L + NFFE RV +YQ+ + Sbjct: 332 QYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLTGKTNFFEKRVGDYQKAGVM 385 >gi|241589542|ref|YP_002979567.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D] gi|240868254|gb|ACS65913.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D] Length = 328 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 178/297 (59%), Positives = 224/297 (75%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 A KRVNV +KR++N +DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK Sbjct: 15 ASATAKRVNVAEKRIINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMARDIALWK 74 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H Sbjct: 75 DPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTH 134 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + D++ L+ L Sbjct: 135 AYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDRKLLKSL 194 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+EN Sbjct: 195 IVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLEN 254 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 PHLWT EF+ + + +A LE YA +TMP+G +GLNA + Y++FI NRRC Sbjct: 255 PHLWTAEFKVEITELFKQAVDLEYRYAEDTMPRGVLGLNASMFKGYLRFICNRRCRS 311 >gi|159465291|ref|XP_001690856.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas reinhardtii] gi|158279542|gb|EDP05302.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas reinhardtii] Length = 493 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 150/345 (43%), Gaps = 29/345 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P R + D+ +L + L P+KY WE Y + W EV DL Sbjct: 153 EPSAEVASRSTLLDEDLLRENPNRFTLFPIKYPDLWEFYKQGVASFWTVEEVDFTGDLID 212 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W L +E+ IK L FFA+S+ +V N+ + PE R + Q E VH Sbjct: 213 WH---RLKPEEQRFIKYVLAFFAASDGIVMENLAARFMSDIQVPEARAFYGFQIAMENVH 269 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + ++ + E F+ +P++ KA WA+++ + Sbjct: 270 SEMYSVLLDHYVREPEERNQLFDAIHTIPTVAKKAEWAMRWI--------------SSSN 315 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG+ F F I L + M G++ I RDE LH +F + + Sbjct: 316 VFAERLVGFACVEGIHFSGSFCSIFWLKKRCLMPGLSFSNVLISRDEGLHCDFACCLYS- 374 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL + +++ ++ EA LE + E + +G+NA QY++F+A+R Sbjct: 375 ------HLKNRLSRERVLQIVDEAVQLEDEFCTEALSCELLGMNADLMRQYIRFVADRLL 428 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G E + T NPF WM E+I L+ + NFFE RV EYQ+ + Sbjct: 429 VSLGYEKHYN-TRNPFDWM-EMISLQGKANFFERRVGEYQRAGVM 471 >gi|291220709|ref|XP_002730368.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Saccoglossus kowalevskii] Length = 402 Score = 340 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 102/352 (28%), Positives = 163/352 (46%), Gaps = 31/352 (8%) Query: 5 TGLSPIQAGEKRV---NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T + P++ +++ N +D+ +L + P+KY W+ Y A + W EV + Sbjct: 63 TDVEPVKLEKRKSKPQNNEDEPLLRDNPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDL 122 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DLA W S L DDER I L FFA+S+ +V N+V + + E R + Q Sbjct: 123 SKDLAHWAS---LKDDERHFISHVLAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQI 179 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS + +I + D E FN +P + KA WAL + Sbjct: 180 AIENIHSEMYSLLIDTYIRDPQEREYLFNAIETLPPVKRKAQWALNWIN----------- 228 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 AD + V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 229 --ADNATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 286 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + HL K QQ+ ++ +A +E + + +P +G+N +QY++F Sbjct: 287 CLMFS-------HLTNKPSQQRIIEIIRDAVKIEQEFLTDALPVSLIGMNKDLMKQYIEF 339 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +A+R +G ++ ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 340 VADRLLLDLGCNKIYN-KENPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 389 >gi|4557845|ref|NP_001025.1| ribonucleoside-diphosphate reductase subunit M2 isoform 2 [Homo sapiens] gi|400979|sp|P31350|RIR2_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|36155|emb|CAA42181.1| small subunit ribonucleotide reductase [Homo sapiens] gi|251637|gb|AAA09577.1| ribonucleotide reductase R2 subunit [Homo sapiens] gi|12804875|gb|AAH01886.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens] gi|14029165|gb|AAK51163.1| ribonucleotide reductase M2 subunit [Homo sapiens] gi|20988810|gb|AAH30154.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens] gi|62702173|gb|AAX93099.1| unknown [Homo sapiens] gi|123981920|gb|ABM82789.1| ribonucleotide reductase M2 polypeptide [synthetic construct] gi|123996753|gb|ABM85978.1| ribonucleotide reductase M2 polypeptide [synthetic construct] gi|189053955|dbj|BAG36462.1| unnamed protein product [Homo sapiens] gi|261861600|dbj|BAI47322.1| ribonucleotide reductase M2 [synthetic construct] Length = 389 Score = 338 bits (868), Expect = 5e-91, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 157/346 (45%), Gaps = 28/346 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 56 TEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 115 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 116 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 172 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D E FN +P + KA+WAL++ + Sbjct: 173 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEA 219 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 220 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 278 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL K +++ R ++ A +E + E +P +G+N +QY++F+A+R Sbjct: 279 ------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 332 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 333 LELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 376 >gi|148705043|gb|EDL36990.1| ribonucleotide reductase M2 [Mus musculus] Length = 411 Score = 338 bits (868), Expect = 5e-91, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 155/343 (45%), Gaps = 28/343 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +V+D+ +L + P++Y W+ Y A + W EV + D+ W+ Sbjct: 81 SKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 139 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L DER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 140 --ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 197 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D E FN +P + KA+WAL++ + Sbjct: 198 YSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWI-------------GDKEATYG 244 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 245 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 300 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 HL K +Q+ R ++ A +E + E +P +G+N +QY++F+A+R ++ Sbjct: 301 ---HLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 357 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 358 GFNKIF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 398 >gi|145249942|ref|XP_001401310.1| ribonucleoside-diphosphate reductase small chain [Aspergillus niger CBS 513.88] gi|134081995|emb|CAK46680.1| unnamed protein product [Aspergillus niger] Length = 396 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 101/355 (28%), Positives = 164/355 (46%), Gaps = 31/355 (8%) Query: 2 ANNTGLSPIQAGEKRVNVDD----KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 A+ P++A + + + + +L L P+KY W+ Y A + W Sbjct: 44 ADKPVEKPVEAPKVAPGIKEMEASEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAE 103 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + DL W N L DDER I L FFA+S+ +V N+V + PE R + Sbjct: 104 EIDLSKDLHDWH--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFY 161 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +HS T+ +I + + + F+ +P I KA+WA+++ Q Sbjct: 162 GFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIAKKADWAIKWIQ------- 214 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 D + F Q L F V EG++F FA I L + M G+ + I RDE LH Sbjct: 215 -----DRESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLH 268 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 +F + + HL + +Q ++ EA +E + + +P +G+N+ Q Sbjct: 269 TDFACLLFS-------HLNNRPSKQVVEDIIVEAVGIEQEFLTDALPVALLGMNSKLMCQ 321 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 Y++F+A+R +G + + T NPF +M E I L + NFFE RV +YQ+ + Sbjct: 322 YIEFVADRLLVALGNKKYYNAT-NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 374 >gi|312216546|emb|CBX96496.1| similar to ribonucleoside-diphosphate reductase subunit M2 [Leptosphaeria maculans] Length = 410 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 96/345 (27%), Positives = 153/345 (44%), Gaps = 27/345 (7%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P A R + +L L P+KY W+ Y A + W E+ + DL Sbjct: 57 KPSTAPTIRPEEAHEPLLQENPQRFVLFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHD 116 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W + L DDER I L FFA+S+ +V N+V + PE R + Q E VH Sbjct: 117 WNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENVH 174 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S T+ +I + + + FN +P I KA+WAL++ Sbjct: 175 SETYSLLIDTYISEPRQRKYLFNAIDNIPCIRKKADWALRWI-------------SDKNS 221 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG++F FA I L + M G+ + I RDE +H +F + + Sbjct: 222 TFANRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLLFSL 281 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 L T+ ++ + ++ EA +E + + +P +G+NA QY++F+A+R Sbjct: 282 -------LNTRPSKESVQAIITEAVEIEKEFLSDALPCALLGMNATLMCQYIEFVADRLL 334 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G + T NPF +M E I L + NFFE RV +YQ+ + Sbjct: 335 LSLGNTKFYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 377 >gi|2500209|sp|Q60561|RIR2_MESAU RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|49650|emb|CAA48232.1| ribonucleotide reductase [Mesocricetus auratus] Length = 386 Score = 338 bits (866), Expect = 9e-91, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 157/346 (45%), Gaps = 28/346 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P +V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 57 EPESKVSTNPSVEDEPLLRENPRRFVVFPIEYHDIWKMYKKAEASFWTAEEVDLSKDIQH 116 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+ L DER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 117 WE---ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIH 173 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D E FN +P + KA+WAL++ + Sbjct: 174 SEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWI-------------GDKEA 220 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 221 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 279 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R Sbjct: 280 ------HLVHKPSEQRVQEIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 333 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++G +FK ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 334 LELGFNKIFKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377 >gi|303314521|ref|XP_003067269.1| ribonucleoside-diphosphate reductase small chain, putative [Coccidioides posadasii C735 delta SOWgp] gi|240106937|gb|EER25124.1| ribonucleoside-diphosphate reductase small chain, putative [Coccidioides posadasii C735 delta SOWgp] gi|320037571|gb|EFW19508.1| ribonucleoside-diphosphate reductase small subunit [Coccidioides posadasii str. Silveira] Length = 408 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 93/352 (26%), Positives = 159/352 (45%), Gaps = 27/352 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + + +P ++ + ++ +L L PLKY W+ Y A + W E+ Sbjct: 56 VKPSAPEAPKKSLTPKELEAEEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTAEEID 115 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DL W + L DDER I R L FFA+S+ +V N+V + PE R + Q Sbjct: 116 LSKDLHDWNHR--LNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQ 173 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS T+ +I + + + F+ +P I KA+WA+++ Q S Sbjct: 174 IMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIQDQES------ 227 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 + + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 228 -------TFAQRLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 280 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + + HL + + + ++ EA +E + + +P +G+N+ QY++ Sbjct: 281 ACLLFS-------HLRHRPGPEAVQAIITEAVEIEKEFLTDALPCALLGMNSKLMCQYIE 333 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 F+A+R +G + + T NPF +M I L + NFFE RV +YQ+ + Sbjct: 334 FVADRLLVALGNKKFYNAT-NPFDFMDN-ISLSGKTNFFEKRVGDYQKAGVM 383 >gi|149408710|ref|XP_001506085.1| PREDICTED: similar to 5,10-methenyltetrahydrofolate synthetase [Ornithorhynchus anatinus] Length = 394 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 92/336 (27%), Positives = 156/336 (46%), Gaps = 28/336 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L + Sbjct: 71 RVEDEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPE 127 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 128 EKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 187 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + E FN +P + KA+WAL++ + + V + Sbjct: 188 YIKEPKEREFLFNAIETLPCVKKKADWALRWI-------------GDKEATYGERVVAFA 234 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 235 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 287 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ + ++ A +E + E +P +G+N +QY++F+A+R ++G +FK Sbjct: 288 KPSEERVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLLLELGFSKIFK 347 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 348 V-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 381 >gi|255536887|ref|XP_002509510.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] gi|223549409|gb|EEF50897.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] Length = 329 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 92/333 (27%), Positives = 153/333 (45%), Gaps = 29/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P++Y WE Y A + W EV + DL W+S LT DE+ Sbjct: 6 EEPLLAPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDLRHWES---LTPDEKH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + + E R + Q E +HS + ++ + Sbjct: 63 FISHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIK 122 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F+ VP I KA WAL++ E + + + E Sbjct: 123 DSNEKNRLFHAIETVPCIAKKAEWALKWIDG--------------SESFAERIIAFACVE 168 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + + +K K Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLKK-------KLS 221 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +++ + ++ +A +E + + +P VG+N QY++F+A+R +G + + Sbjct: 222 EERVKGIVRDAVNIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGCGKEYNVS- 280 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV EYQ+ A + Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKAAVMS 312 >gi|225561749|gb|EEH10029.1| ribonucleotide reductase M2 B [Ajellomyces capsulatus G186AR] gi|240275354|gb|EER38868.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces capsulatus H143] gi|325091193|gb|EGC44503.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces capsulatus H88] Length = 413 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 101/356 (28%), Positives = 162/356 (45%), Gaps = 32/356 (8%) Query: 2 ANNTGLSPIQAGEKRVN-----VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56 + P + +K + D+ +L + L PLKY W+ Y A + W Sbjct: 54 TETSARKPEEGEKKALTGVKALEADEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTA 113 Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 E+ + DL W N L DDER I L FFA+S+ +V N+V + PE R + Sbjct: 114 EEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCF 171 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173 Q E +HS T+ +I + + + F+ +P I KA+WA+++ + Sbjct: 172 YGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIETIPCIRKKADWAIRWIE------ 225 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 D D F Q L F V EG++F FA I L + M G+ + I RDE L Sbjct: 226 ------DKDSTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 278 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293 H +F + + HL + + ++ EA +E + + +P +G+NA Sbjct: 279 HTDFACLLFS-------HLRHRPSPEAVEKIITEAVTIEQEFLSDALPVALLGMNAKLMC 331 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 QY++F+A+R +G + ++ T NPF +M I L + NFFE RV +YQ+ + Sbjct: 332 QYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 385 >gi|7106399|ref|NP_033130.1| ribonucleoside-diphosphate reductase subunit M2 [Mus musculus] gi|132626|sp|P11157|RIR2_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|22218698|pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State gi|22218699|pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State gi|52696260|pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase Subunit R2 Under Oxidizing Conditions. A Fully Occupied Dinuclear Iron Cluster. gi|52696261|pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase Subunit R2 Under Reducing Conditions. A Fully Occupied Dinuclear Iron Cluster And Bound Acetate. gi|157834262|pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse gi|50720|emb|CAA33707.1| M2 ribonucleotide reductase [Mus musculus] gi|200768|gb|AAA40062.1| ribonucleotide reductase subunit M2 [Mus musculus] gi|26354034|dbj|BAC40647.1| unnamed protein product [Mus musculus] gi|54887418|gb|AAH85136.1| Ribonucleotide reductase M2 [Mus musculus] gi|74139292|dbj|BAE40793.1| unnamed protein product [Mus musculus] gi|74151119|dbj|BAE27683.1| unnamed protein product [Mus musculus] gi|74179887|dbj|BAE36508.1| unnamed protein product [Mus musculus] gi|74188932|dbj|BAE39238.1| unnamed protein product [Mus musculus] gi|74189151|dbj|BAE39331.1| unnamed protein product [Mus musculus] gi|74206394|dbj|BAE24918.1| unnamed protein product [Mus musculus] gi|74211991|dbj|BAE40165.1| unnamed protein product [Mus musculus] Length = 390 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 155/343 (45%), Gaps = 28/343 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +V+D+ +L + P++Y W+ Y A + W EV + D+ W+ Sbjct: 60 SKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 118 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L DER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 119 --ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 176 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D E FN +P + KA+WAL++ + Sbjct: 177 YSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWI-------------GDKEATYG 223 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 224 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 279 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 HL K +Q+ R ++ A +E + E +P +G+N +QY++F+A+R ++ Sbjct: 280 ---HLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 336 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 337 GFNKIF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377 >gi|75076796|sp|Q4R7Q7|RIR2_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|67969020|dbj|BAE00865.1| unnamed protein product [Macaca fascicularis] Length = 389 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 94/346 (27%), Positives = 157/346 (45%), Gaps = 28/346 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 56 AEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 115 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 116 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 172 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D E FN +P + KA+WAL++ + Sbjct: 173 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVEKKADWALRWI-------------GDKEA 219 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 220 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 278 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL K +++ R ++ A +E + E +P +G+N +QY++F+A+R Sbjct: 279 ------HLVHKPSEERVREIIINAVRVEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 332 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 333 LELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 376 >gi|212533263|ref|XP_002146788.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium marneffei ATCC 18224] gi|210072152|gb|EEA26241.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium marneffei ATCC 18224] Length = 406 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 94/352 (26%), Positives = 155/352 (44%), Gaps = 27/352 (7%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 +P A + ++ +L L P+KY W+ Y A + W E+ + Sbjct: 53 KPTVQATPKVAPSIKEMEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDL 112 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W N L DDER I L FFA+S+ +V N+V + PE R + Q Sbjct: 113 SKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQI 170 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS T+ +I + + + F+ +P I KA+WAL++ Sbjct: 171 MMENIHSETYSLLIDTYINEPKQRTYLFDAIDNIPCIRKKADWALRWI------------ 218 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 219 -SDKESTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 277 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + HL T+ + ++ +A +E + + +P +G+N+ QY++F Sbjct: 278 CMLFS-------HLNTRPNPKVIEDIIVDAVAIEQEFLTDALPCALLGMNSKLMCQYIEF 330 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +A+R +G + + T NPF +M E I L + NFFE RV +YQ+ + Sbjct: 331 VADRLLVALGNKKYYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVMN 380 >gi|149728153|ref|XP_001502384.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit M2 (Ribonucleotide reductase small subunit) (Ribonucleotide reductase small chain) [Equus caballus] Length = 425 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 93/336 (27%), Positives = 155/336 (46%), Gaps = 28/336 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W+ L + Sbjct: 102 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALKPE 158 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 159 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 218 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E FN +P + KA+WAL++ + + V + Sbjct: 219 YIKDSKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEATYGERVVAFA 265 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 266 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 318 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R ++G +F Sbjct: 319 KPSEQRVKEIIINAVRIEQEFLTEALPVRLIGMNCALMKQYIEFVADRLLLELGFNKVF- 377 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 378 RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 412 >gi|119174781|ref|XP_001239725.1| hypothetical protein CIMG_09346 [Coccidioides immitis RS] Length = 408 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 93/352 (26%), Positives = 158/352 (44%), Gaps = 27/352 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + + P ++ + ++ +L L PLKY W+ Y A + W E+ Sbjct: 56 VKPSAPEVPKKSLTPKELEAEEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTAEEID 115 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DL W + L DDER I R L FFA+S+ +V N+V + PE R + Q Sbjct: 116 LSKDLHDWNHR--LNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQ 173 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS T+ +I + + + F+ +P I KA+WA+++ Q S Sbjct: 174 IMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIQDQES------ 227 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 + + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 228 -------TFAQRLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 280 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + + HL + + + ++ EA +E + + +P +G+N+ QY++ Sbjct: 281 ACLLFS-------HLRHRPGPEAVQAIITEAVEIEKEFLTDALPCALLGMNSKLMCQYIE 333 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 F+A+R +G + + T NPF +M I L + NFFE RV +YQ+ + Sbjct: 334 FVADRLLVALGNKKFYNAT-NPFDFMDN-ISLSGKTNFFEKRVGDYQKAGVM 383 >gi|260950985|ref|XP_002619789.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720] gi|238847361|gb|EEQ36825.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720] Length = 419 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 98/337 (29%), Positives = 155/337 (45%), Gaps = 27/337 (8%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + D+ +L L P+KY W+ Y A + W E+ + D+ WK N +T Sbjct: 88 KAQEKDEPLLVENKRRFVLFPIKYNEIWQMYKKAEASFWTAEEIDLSKDINDWK--NRMT 145 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 D+ER I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I Sbjct: 146 DNERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLI 205 Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 S D E FN +P I KA WAL++ D+ + V Sbjct: 206 DSYIKDPKEADFLFNAIENIPCIKKKAEWALRWIAD-------------DEALFAERLVA 252 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++F FA I L + M G+ + I RDE LH +F + + HL Sbjct: 253 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HL 305 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 + ++ EA +E Y + +P +G+N QY++F+A+R +G + + Sbjct: 306 NNRPNPAIVEKIITEAVTIEKEYFTDALPASLLGMNCDLMCQYVEFVADRLLVALGNKKV 365 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 + T NPF +M E I L + NFFE RV++YQ+ + Sbjct: 366 YNVT-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 400 >gi|301772278|ref|XP_002921557.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Ailuropoda melanoleuca] Length = 393 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 98/348 (28%), Positives = 160/348 (45%), Gaps = 30/348 (8%) Query: 8 SPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 P Q K + +V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 58 EPTQQETKVLAPSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI 117 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E Sbjct: 118 QHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMEN 174 Query: 126 VHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +HS + +I + D E FN +P + KA+WAL++ Sbjct: 175 IHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWI-------------GDK 221 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 + + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 222 EATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMF 281 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 HL K +Q+ R ++ A +E + E +P +G+N +QY++F+A+R Sbjct: 282 K-------HLVHKPSEQRVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADR 334 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 335 LMLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 380 >gi|118089009|ref|XP_001231545.1| PREDICTED: similar to small subunit ribonucleotide reductase isoform 1 [Gallus gallus] Length = 392 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 92/352 (26%), Positives = 162/352 (46%), Gaps = 28/352 (7%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + T ++ + + +++ +L + P++Y W+ Y A + W EV + Sbjct: 53 SEGTPVTALCPPQVARGAEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDL 112 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W+S L +E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 113 SKDLQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQI 169 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS + +I + D E FN +P + KA+WA+++ Sbjct: 170 AMENIHSEMYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWAIRWI------------ 217 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + + V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 218 -GDKKATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 276 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + HL K +++ + ++ A L+E + E +P +G+N +QY++F Sbjct: 277 CLMFK-------HLIRKPSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEF 329 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +A+R ++G ++K ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 330 VADRLMLELGFRKIYKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 379 >gi|289620013|emb|CBI53457.1| unnamed protein product [Sordaria macrospora] Length = 410 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 156/342 (45%), Gaps = 27/342 (7%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A + + +L L P+KY W+ Y A + W E+ + DL W Sbjct: 67 APTLKPEEAAEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 124 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 N LTDDER + L FFA+S+ +V N+V + PE R + Q E +HS T+ Sbjct: 125 NRLTDDERFFVSHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 184 Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 +I + + + FN +P I KA+WAL++ Sbjct: 185 SLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI-------------TDKSSTFAQ 231 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 232 RLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS----- 286 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 HL + +Q + ++ +A +E + E +P +G+NA +QY++F+A+R +G Sbjct: 287 --HLNNRPSKQLIQDIIVDAVRIEQEFLTEALPCALLGMNADLMKQYIEFVADRLLVALG 344 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 E +++ T NPF +M E I L + NFFE RV +YQ+ + Sbjct: 345 NEKVYRST-NPFDFM-ENISLGGKTNFFEKRVADYQKAGVMN 384 >gi|74207686|dbj|BAE40088.1| unnamed protein product [Mus musculus] Length = 390 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 94/343 (27%), Positives = 155/343 (45%), Gaps = 28/343 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +V+D+ +L + P++Y W+ Y A + W EV + D+ W+ Sbjct: 60 SKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 118 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L DER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 119 --ALKPDERHFISHALAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 176 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D E FN +P + KA+WAL++ + Sbjct: 177 YSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWI-------------GDKEATYG 223 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 224 ERVMAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 279 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 HL K +Q+ R ++ A +E + E +P +G+N +QY++F+A+R ++ Sbjct: 280 ---HLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 336 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 337 GFNKIF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377 >gi|169860861|ref|XP_001837065.1| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] gi|116501787|gb|EAU84682.1| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] Length = 414 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 92/347 (26%), Positives = 155/347 (44%), Gaps = 27/347 (7%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 T L GE + ++ +L L P++Y W+ Y A + W E+ + D Sbjct: 66 TLLRRKFVGEVDLPESEEPLLKESKRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKD 125 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W N L D+ER I L FFA+S+ +V N++ + E R + Q E Sbjct: 126 LHDWN--NKLNDNERHFISHVLAFFAASDGIVNENLLERFSNEVQAAEARCFYGFQIMME 183 Query: 125 AVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 +HS T+ +I + D + F+ +P I KA+WAL + S Sbjct: 184 NIHSETYSLLIDTYIKDPAQRDYLFDAVDTIPCIKKKADWALTWISDQKS---------- 233 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 + V + EG++F FA I L + M G+ + I RDE +H +F + Sbjct: 234 ---TFAERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLL 290 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 + +K + + ++ EA +E + + +P +G+NA QY++F+A+ Sbjct: 291 FSHLKR-------RPHPDVVKRIITEAVAIEQEFLTDALPVKLIGMNAELMCQYIEFVAD 343 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 R +G E ++ T NPF +M +I L+ + NFFE RV++Y + Sbjct: 344 RLLVSLGNEKVYNST-NPFDFMD-MISLQGKTNFFEKRVSDYAKAGV 388 >gi|242777635|ref|XP_002479074.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces stipitatus ATCC 10500] gi|218722693|gb|EED22111.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces stipitatus ATCC 10500] Length = 406 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 93/352 (26%), Positives = 155/352 (44%), Gaps = 27/352 (7%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 +P A + ++ +L L P+KY W+ Y A + W E+ + Sbjct: 53 KPAVQEAPKVAPGIKEMEVNEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDL 112 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W N L DDER + R L FFA+S+ +V N+V + PE R + Q Sbjct: 113 SKDLHDWN--NRLNDDERYFVSRVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQI 170 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS T+ +I + + + F+ +P I KA+WAL++ Sbjct: 171 MMENIHSETYSLLIDTYINEPKQRTYLFDAIDNIPCIRKKADWALRWI------------ 218 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 219 -SDKESTFAQRLVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 277 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + HL + + ++ +A +E + + +P +G+N+ QY++F Sbjct: 278 CLLFS-------HLNNRPNPKVIEDIIVDAVAIEQEFLTDALPCSLLGMNSKLMCQYIEF 330 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +A+R +G + + T NPF +M E I L + NFFE RV +YQ+ + Sbjct: 331 VADRLLVALGNKKYYNST-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVMN 380 >gi|302843870|ref|XP_002953476.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f. nagariensis] gi|300261235|gb|EFJ45449.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f. nagariensis] Length = 400 Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats. Identities = 88/344 (25%), Positives = 154/344 (44%), Gaps = 29/344 (8%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + ++ D + +L+ D + P+KY WE Y A + W EV + DD+ W Sbjct: 67 ELFTSPRKSMRDPEPLLDENPDRFCMFPIKYPKIWEMYKKAEASFWTAEEVDLGDDMKHW 126 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L+D ER I L FFA+S+ +V N+ + + + PE R + Q E +HS Sbjct: 127 E---KLSDGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVAIENIHS 183 Query: 129 HTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 + ++ + D E F+ VP I KA WA+++ + Sbjct: 184 EMYSLLLETYIKDPIEKHKLFHSIETVPCIKKKAQWAIKWI--------------GSESS 229 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 + V + EG++F F I L + M G+ + I RDE LH +F + + Sbjct: 230 FPERLVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYGML 289 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 + + + ++ EA +E + + +P +G+N+ QY++F+A+R Sbjct: 290 SKQLEE-------SRIKEIICEAVDIENEFCTDALPVDLIGMNSRLMAQYIEFVADRLLV 342 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G + T NPF +M +I L+ + NFFE RV +YQ+ + Sbjct: 343 ALGCSKAYNVT-NPFDFMD-MISLQGKTNFFEKRVGDYQKSGVM 384 >gi|224129040|ref|XP_002328875.1| predicted protein [Populus trichocarpa] gi|222839305|gb|EEE77642.1| predicted protein [Populus trichocarpa] Length = 329 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 29/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P++Y WE Y A + W EV + D+ W++ LT DE+ Sbjct: 6 EEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDIRHWEN---LTPDEKH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + + E R + Q E +HS + ++ + Sbjct: 63 FISHVLAFFAASDGIVLENLAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIK 122 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F+ VP + KA WAL++ E + V + E Sbjct: 123 DSEEKNRLFHAIETVPCVAKKARWALRWIDG--------------SESFAERLVAFACVE 168 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + + ++ K Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLS 221 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +++ + ++ +A +E + + +P VG+N QY++F+A+R +G ++ Sbjct: 222 EEQVKGIVKDAVDIEREFVVDALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA- 280 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV EYQ+ + + Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312 >gi|322709430|gb|EFZ01006.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium anisopliae ARSEF 23] Length = 414 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 99/345 (28%), Positives = 158/345 (45%), Gaps = 27/345 (7%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A + D+ +L L P+KY W+ Y A + W E+ + DL Sbjct: 67 SAAVAPGIKAEEVDEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHD 126 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W N L DDE+ I L FFA+S+ +V N+V + PE R + Q E +H Sbjct: 127 WN--NRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIH 184 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S T+ +I + + + FN +P I KA+WA+++ Q + Sbjct: 185 SETYSLLIDTYIKENAQRTYLFNAIDTIPCIRKKADWAIRWIQD-------------KES 231 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 232 TFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLL--- 288 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + HL + +Q ++ +A +E + E +P +G+N+ +QY++F+A+R Sbjct: 289 ----HSHLKNRASKQVIYDIITDAVAIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLL 344 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G E ++K T NPF +M E I L + NFFE RV +YQ+ L Sbjct: 345 VALGNEKVYK-TSNPFDFM-ENISLGGKTNFFEKRVGDYQKAGVL 387 >gi|302665732|ref|XP_003024474.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517] gi|291188529|gb|EFE43863.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517] Length = 529 Score = 335 bits (858), Expect = 7e-90, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 157/351 (44%), Gaps = 30/351 (8%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + P + ++ +L L P+KY W+ Y A + W E+ + Sbjct: 181 AETQVVKP---KTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 237 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W N L DDER I L FFA+S+ +V N++ + PE R + Q Sbjct: 238 SKDIHDWN--NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 295 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS T+ +I + ++ + F +P I KA+WA+++ Q Sbjct: 296 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 344 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 D D F Q L F V EG++F FA I L + M G+ + I RDE LH +F Sbjct: 345 -DKDSTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 402 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + HL + ++ EA +E + + +P +G+NA QY++F Sbjct: 403 CLLFS-------HLNYRPDPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEF 455 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +A+R +G + + T NPF +M I L + NFFE RV +YQ+ + Sbjct: 456 VADRLLVALGNKKFYN-TTNPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 504 >gi|159465835|ref|XP_001691128.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas reinhardtii] gi|158279814|gb|EDP05574.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas reinhardtii] Length = 394 Score = 335 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 93/338 (27%), Positives = 155/338 (45%), Gaps = 29/338 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 R + ++ +L+ D + P+KY WE Y A + W EV + DD+ W+ L Sbjct: 67 PRKRMLEEPLLDENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLGDDMKHWE---KL 123 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +D ER I L FFA+S+ +V N+ + + + PE R + Q E +HS + + Sbjct: 124 SDGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVAIENIHSEMYSLL 183 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 + S D E F+ VP I KA WA+++ + V Sbjct: 184 LESYIKDPQEKHKLFHSIETVPCIKKKAQWAMKWI--------------GSDSVFSERLV 229 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F F I L + M G+ + I RDE LH +F + + Sbjct: 230 AFAAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACMLFSM------- 282 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L T+ + + + ++ EA +E + E +P +G+N+ QY+QF+A+R +G Sbjct: 283 LNTRIDETRVKQIIVEAVEIEQEFCTEALPVDLIGMNSRLMAQYIQFVADRLLVSLGCAK 342 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 + NPF +M E+I L+ + NFFE RV +YQ+ + Sbjct: 343 QYNVV-NPFEFM-EMISLQGKTNFFEKRVGDYQKNGVM 378 >gi|148230557|ref|NP_001080772.1| ribonucleotide reductase M2 polypeptide [Xenopus laevis] gi|28839018|gb|AAH47975.1| Rrm2-prov protein [Xenopus laevis] Length = 386 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 156/346 (45%), Gaps = 28/346 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 +P K D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 53 TPTSKVPKNPRFTDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQH 112 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L DER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 113 WES---LKTDERYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D E FN +P + KA+WAL++ Q Sbjct: 170 SEMYSLLIDTYIKDPKERGFLFNAIETLPCVKKKADWALRWI-------------SDKQA 216 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 217 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFR- 275 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL K +++ ++ A +E + E +P +G+N +QY++F+A+R Sbjct: 276 ------HLVHKPSEERVVQLITNAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLL 329 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++G +FK + NPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 330 LELGFNKVFKAS-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 373 >gi|261189551|ref|XP_002621186.1| ribonucleotide reductase small subunit RnrA [Ajellomyces dermatitidis SLH14081] gi|239591422|gb|EEQ74003.1| ribonucleotide reductase small subunit RnrA [Ajellomyces dermatitidis SLH14081] gi|239613047|gb|EEQ90034.1| ribonucleotide reductase small subunit RnrA [Ajellomyces dermatitidis ER-3] gi|327356917|gb|EGE85774.1| ribonucleotide reductase M2 B [Ajellomyces dermatitidis ATCC 18188] Length = 413 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 96/356 (26%), Positives = 159/356 (44%), Gaps = 32/356 (8%) Query: 2 ANNTGLSPIQAGEKRVN-----VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56 T L P + +K + ++ +L + L PLKY W+ Y A + W Sbjct: 54 KETTPLRPEETEKKALTGMKALEAEEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTA 113 Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 E+ + DL W N L DDER I L FFA+S+ +V N+V + PE R + Sbjct: 114 EEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSSEVQVPEARCF 171 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173 Q E +HS T+ +I + + + F+ +P I KA+WA+++ Sbjct: 172 YGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWI------- 224 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 + + V + EG++F FA I L + M G+ + I RDE L Sbjct: 225 ------EDKESSFAQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 278 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293 H +F + + HL + + ++ EA +E + + +P +G+NA Sbjct: 279 HTDFACLLFS-------HLRHRPSPEAVERIITEAVTIEQEFLSDALPVALLGMNAKLMC 331 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 QY++F+A+R +G + ++ T NPF +M I L + NFFE RV +YQ+ + Sbjct: 332 QYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 385 >gi|67515571|ref|XP_657671.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4] gi|40746089|gb|EAA65245.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4] gi|259489743|tpe|CBF90266.1| TPA: Ribonucleotide reductase [Source:UniProtKB/TrEMBL;Acc:Q9HEW8] [Aspergillus nidulans FGSC A4] Length = 406 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 94/355 (26%), Positives = 160/355 (45%), Gaps = 31/355 (8%) Query: 2 ANNTGLSPIQAGEKRVNV----DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 P++ + ++V ++ +L L P+KY W+ Y A + W Sbjct: 50 TKPATEKPVEPSKAALDVKAIEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAE 109 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + DL W N L +DER I R L FFA+S+ +V N++ + PE R + Sbjct: 110 EIDLSKDLHDWN--NRLNEDERYFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFY 167 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +H+ T+ +I + + + F+ +P I KA+WA+++ Q Sbjct: 168 GFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIKWIQD------ 221 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + V + EG++F FA I L + M G+ + I RDE LH Sbjct: 222 -------KESTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLH 274 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 +F + + HL + ++ ++ EA +E + + +P +G+NA Q Sbjct: 275 TDFACLLFS-------HLNWRPSKKVVEDIIVEAVAIEKEFLTDALPCALLGMNAKLMCQ 327 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 Y++F+A+R +G + F T NPF +M E I L + NFFE RV +YQ+ + Sbjct: 328 YIEFVADRLLVALGNKKYFNAT-NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 380 >gi|1710401|sp|P49730|RIR2_TOBAC RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|1044912|emb|CAA63194.1| ribonucleotide reductase R2 [Nicotiana tabacum] Length = 329 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 29/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + D + P++Y WE Y A + W EV + D W++ LT ER Sbjct: 6 EEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWET---LTPGERH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + + E R + Q E +HS + ++ S Sbjct: 63 FITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIK 122 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F P + KA WAL++ E + V + E Sbjct: 123 DSDEKSRLFRAVETNPCVEKKAKWALRWIDG--------------SETFAERLVAFACVE 168 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + + ++ TK Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------TKLT 221 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +++ + ++ +A +E + + +P VG+N +Y++F+A+R +G + L+ + Sbjct: 222 EERVKGIVADAVEIEREFVCDALPCALVGMNGDLMSKYIEFVADRLLDALGYDKLYN-AQ 280 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV EYQ+ + + Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312 >gi|149637725|ref|XP_001508783.1| PREDICTED: similar to Ribonucleotide reductase M2 B (TP53 inducible) [Ornithorhynchus anatinus] Length = 401 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 94/340 (27%), Positives = 160/340 (47%), Gaps = 28/340 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E + ++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 74 ENGLQPCEEPLLRKSSRRFVIFPIQYPEIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 130 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 131 LKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 190 Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D + FN +P + KA+W+L++ Q + Sbjct: 191 LIDTYIKDPKKREFLFNAIETMPFVKKKADWSLRWIAD-------------RQSTFGERV 237 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 238 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVK--- 294 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 K + K + ++ +A +E + E +P G +G+N +QY++F+A+R ++G Sbjct: 295 ----KPSEDKVKEIIIDAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLVELGFS 350 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +F +++NPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 351 KVF-HSDNPFDFM-ENISLEGKTNFFEKRVSEYQRFAVMS 388 >gi|322693757|gb|EFY85606.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium acridum CQMa 102] Length = 411 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 103/341 (30%), Positives = 161/341 (47%), Gaps = 27/341 (7%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A + D+ +L L P+KY W+ Y A + W E+ + DL W Sbjct: 68 APGIKAEEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 125 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 N L DDE+ I L FFA+S+ +V N+V + PE R + Q E +HS T+ Sbjct: 126 NRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 185 Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 +I + + + FN +P I KA+WA+++ Q D + F Q Sbjct: 186 SLLIDTYIKENAQRTYLFNAIDTIPCIRKKADWAIRWIQ------------DKESTFAQR 233 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L F V EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 234 LVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLL------- 285 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 + HL + +Q ++ +A +E + E +P +G+N+ +QY++F+A+R +G Sbjct: 286 HSHLKNRASKQIIHDIITDAVAIEKEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALG 345 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 E ++K T NPF +M E I L + NFFE RV +YQ+ L Sbjct: 346 NEKVYK-TSNPFDFM-ENISLGGKTNFFEKRVGDYQKAGVL 384 >gi|224055741|ref|XP_002298630.1| predicted protein [Populus trichocarpa] gi|222845888|gb|EEE83435.1| predicted protein [Populus trichocarpa] Length = 329 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 154/333 (46%), Gaps = 29/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P++Y WE Y A + W EV + D+ W++ LT DE+ Sbjct: 6 EEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDVGHWEN---LTPDEKH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V NI + + E R + Q E +HS + ++ + Sbjct: 63 FISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIK 122 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F+ VP + KA WAL++ E + + + E Sbjct: 123 DSTEKNRLFHAIETVPCVAKKAEWALRWIDG--------------GESFAERLIAFACVE 168 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + + ++ K Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLS 221 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +++ + ++ EA +E + +++P VG+N QY++F+A+R +G ++ Sbjct: 222 EERVKGIVKEAVDIEREFVVDSLPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA- 280 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV EYQ+ + + Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312 >gi|258567064|ref|XP_002584276.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus reesii 1704] gi|237905722|gb|EEP80123.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus reesii 1704] Length = 401 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 159/352 (45%), Gaps = 27/352 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + + P +A + ++ +L L PLKY W+ Y A + W E+ Sbjct: 49 IKPSAPEEPKKALSPKELEAEEPLLQENPQRFVLFPLKYHEIWQMYKKAEASFWTAEEID 108 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DL W + L DDER I R L FFA+S+ +V N+V + PE R + Q Sbjct: 109 LSKDLHDWNHR--LNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQ 166 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS T+ +I + + + F +P I KA+WA+++ Q Sbjct: 167 IMMENIHSETYSLLIDTYIKEPKQRTYLFEALDNIPCIRKKADWAIRWIQ---------- 216 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 D D F Q L F V EG++F FA I L + M G+ + I RDE LH +F Sbjct: 217 --DKDSTFAQRLIAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 273 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + + I+ + ++ EA +E + + +P +G+N+ QY++ Sbjct: 274 ACLLFSHIR-------HRPTPAAVEAIITEAVEIEKEFLTDALPCALLGMNSKLMCQYIE 326 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 F+A+R +G + + T NPF +M I L + NFFE RV +YQ+ + Sbjct: 327 FVADRLLVALGNKKFYHAT-NPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 376 >gi|293343290|ref|XP_002725449.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Rattus norvegicus] gi|293355176|ref|XP_002728627.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Rattus norvegicus] Length = 390 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 157/343 (45%), Gaps = 28/343 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + +++++ +L + P++Y W+ Y A + W EV + D+ W+ Sbjct: 60 SKAPTKPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 118 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L DER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 119 --ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 176 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D E FN +P + KA+WAL++ + Sbjct: 177 YSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWI-------------GDKEATYG 223 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 224 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 279 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 HL K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R ++ Sbjct: 280 ---HLVHKPSEQRVKEIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 336 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 G +FK ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 337 GFNKIFKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377 >gi|302409182|ref|XP_003002425.1| ribonucleoside-diphosphate reductase small chain [Verticillium albo-atrum VaMs.102] gi|261358458|gb|EEY20886.1| ribonucleoside-diphosphate reductase small chain [Verticillium albo-atrum VaMs.102] Length = 414 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 100/351 (28%), Positives = 160/351 (45%), Gaps = 27/351 (7%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 G + A + D+ +L L P+KY W+ Y A + W E+ + Sbjct: 61 KREEGDKAVVAPGIKDFEADEPLLRENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDL 120 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W N + DDE+ I L FFA+S+ +V N+V + PE R + Q Sbjct: 121 SKDLHDWN--NKINDDEKYFISHILAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQI 178 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS T+ +I + + + FN +P I KA+WAL + Sbjct: 179 MMENIHSETYSLLIDTYIKEPAQRTYLFNAIDTIPCIRKKADWALTWI------------ 226 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + V + V EG++F FA I L + M G+ + I RDE LH +F Sbjct: 227 -TDKKSTFATRLVAFAVVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 285 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + HL + +Q + ++ +A +E + E +P G +G+NA +QY++F Sbjct: 286 CLLFS-------HLNNRPSKQTVQDIVTDAVNIEQEFLTEALPCGLLGMNATLMKQYIEF 338 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +A+R +G E ++K T NPF +M E I L + NFFE RV +YQ+ + Sbjct: 339 VADRLLVALGNEKVYKAT-NPFDFM-ENISLGGKTNFFEKRVADYQKAGVM 387 >gi|73979721|ref|XP_540076.2| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain (Ribonucleotide reductase small chain) isoform 1 [Canis familiaris] Length = 394 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 30/348 (8%) Query: 8 SPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 P + K + + +++ +L + P++Y W+ Y A + W EV + D+ Sbjct: 59 EPAEPKTKVLAPSAEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI 118 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E Sbjct: 119 QHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMEN 175 Query: 126 VHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +HS + +I + D E FN +P + KA+WAL++ Sbjct: 176 IHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWI-------------GDK 222 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 + + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 223 EATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMF 282 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 HL K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R Sbjct: 283 K-------HLVHKPSEQRVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADR 335 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 336 LMLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 381 >gi|218197485|gb|EEC79912.1| hypothetical protein OsI_21460 [Oryza sativa Indica Group] Length = 345 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 86/333 (25%), Positives = 151/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L SD + P++Y WE Y A + W EV + D W L+ DER Sbjct: 20 EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHW--DAALSPDERH 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 78 FVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 137 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F VP++ KA+WA+++ E + V + E Sbjct: 138 DGAEKDRLFRAIDTVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVE 183 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + + ++ K Sbjct: 184 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRG-------KLD 236 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + + ++ +A +E + + +P VG+N QY++F+A+R +G + ++ Sbjct: 237 ESRVQEIVADAVDIEREFVCDALPVALVGMNGELMSQYIEFVADRLLMALGCKKMYNVA- 295 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV +YQ+ + + Sbjct: 296 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 327 >gi|116191729|ref|XP_001221677.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51] gi|88181495|gb|EAQ88963.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51] Length = 409 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 98/345 (28%), Positives = 159/345 (46%), Gaps = 27/345 (7%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S A + + D+ +L L P+KY W+ Y A + W E+ + DL Sbjct: 62 SAAVAPTIKADEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHD 121 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W N + DDE+ I L FFA+S+ +V N+V + PE R + Q E +H Sbjct: 122 WN--NKINDDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIH 179 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S T+ +I + + + FN +P+I KA+WAL++ S Sbjct: 180 SETYSLLIDTYIKEPAQRTHLFNAIDTIPAIRKKADWALRWITDQKS------------- 226 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 V + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 227 TFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS- 285 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL + +Q ++ +A +E + E +P +G+N+ +QY++F+A+R Sbjct: 286 ------HLNNRPSKQIIEDIIVDAVRIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLL 339 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G E +++ T NPF +M E I L + NFFE RV EYQ+ + Sbjct: 340 VALGNEKVYRST-NPFDFM-ENISLGGKTNFFEKRVGEYQKAGVM 382 >gi|85109237|ref|XP_962820.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa OR74A] gi|30316285|sp|Q9C167|RIR2_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|16273691|gb|AAK14804.2| small subunit of ribonucleotide reductase [Neurospora crassa] gi|28924456|gb|EAA33584.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa OR74A] Length = 410 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 156/342 (45%), Gaps = 27/342 (7%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A + ++ +L L P+KY W+ Y A + W E+ + DL W Sbjct: 67 APTLKPEEANEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 124 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 N L DDE+ I L FFA+S+ +V N+V + PE R + Q E +HS T+ Sbjct: 125 NRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 184 Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 +I + + + FN +P I KA+WAL++ Sbjct: 185 SLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI-------------TDKSSTFAQ 231 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 232 RLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS----- 286 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 HL + +Q + ++ +A +E + E +P +G+NA +QY++F+A+R +G Sbjct: 287 --HLNNRPSKQLIQEIIVDAVRIEQEFLTEALPCALLGMNADLMKQYIEFVADRLLVALG 344 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 E +++ T NPF +M E I L + NFFE RV +YQ+ + Sbjct: 345 NEKIYRST-NPFDFM-ENISLGGKTNFFEKRVGDYQKAGVMN 384 >gi|115466138|ref|NP_001056668.1| Os06g0127900 [Oryza sativa Japonica Group] gi|55296211|dbj|BAD67929.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group] gi|113594708|dbj|BAF18582.1| Os06g0127900 [Oryza sativa Japonica Group] gi|186920368|gb|ACC95437.1| ribonucleotide diphosphate reductase small subunit 2 [Oryza sativa Japonica Group] gi|215706414|dbj|BAG93270.1| unnamed protein product [Oryza sativa Japonica Group] gi|222634884|gb|EEE65016.1| hypothetical protein OsJ_19968 [Oryza sativa Japonica Group] Length = 345 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 86/333 (25%), Positives = 152/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L SD + P++Y WE Y A + W EV + D W L+ DER Sbjct: 20 EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHW--DAALSPDERH 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 78 FVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 137 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D+ E F VP++ KA+WA+++ E + V + E Sbjct: 138 DDVEKDRLFRAIDTVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVE 183 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + + ++ K Sbjct: 184 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRG-------KLD 236 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + + ++ +A +E + + +P VG+N QY++F+A+R +G + ++ Sbjct: 237 ESRVQEIVADAVDIEREFVCDALPVALVGMNGELMSQYIEFVADRLLMALGCKKMYNVA- 295 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV +YQ+ + + Sbjct: 296 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 327 >gi|115387427|ref|XP_001211219.1| ribonucleoside-diphosphate reductase small chain [Aspergillus terreus NIH2624] gi|114195303|gb|EAU37003.1| ribonucleoside-diphosphate reductase small chain [Aspergillus terreus NIH2624] Length = 401 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 152/332 (45%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L L P+KY W+ Y A + W E+ + DL W N L +DER Sbjct: 71 NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNEDERY 128 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+V + PE R + Q E +HS T+ +I + Sbjct: 129 FISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMIENIHSETYSLLIDTYIK 188 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 + + F+ +P I KA+WA+++ Q S V + E Sbjct: 189 EPKQRTYLFDAIDNIPCIAKKADWAIKWIQDQES-------------TFGQRLVAFAAVE 235 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + + HL + Sbjct: 236 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPS 288 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +Q ++ EA +E + + +P +G+N+ QY++F+A+R +G F ++ Sbjct: 289 KQVVEDIIVEAVAIEKEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNNKYF-HST 347 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV +YQ+ + Sbjct: 348 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 378 >gi|76630259|ref|XP_584910.2| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] gi|297480610|ref|XP_002691527.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] gi|296482361|gb|DAA24476.1| ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] Length = 389 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 93/336 (27%), Positives = 154/336 (45%), Gaps = 28/336 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W+ L + Sbjct: 66 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALKSE 122 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 123 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 182 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E FN +P + KA+WAL++ + V + Sbjct: 183 YIKDSKEREFLFNAIETMPCVKKKADWALRWI-------------GDKAATYGERVVAFA 229 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 230 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLH 282 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R ++G +F Sbjct: 283 KPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVF- 341 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 342 RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 376 >gi|297805560|ref|XP_002870664.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp. lyrata] gi|297316500|gb|EFH46923.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp. lyrata] Length = 333 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 89/336 (26%), Positives = 158/336 (47%), Gaps = 28/336 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ ++ +L D + P++Y WE Y A + W EV + D W+ N L++D Sbjct: 3 SMPEEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLSND 60 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER IK L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 61 ERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDT 120 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E F +P +T KA WA+++ + + V + Sbjct: 121 YIKDNKERDHLFRAIETIPCVTKKAEWAMKWING--------------SQSFAERIVAFA 166 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F F I L + M G+ + I RDE LH +F + + ++ T Sbjct: 167 CVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLR-------T 219 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ ++++ +A +E + + +P VG+N QY++F+A+R +G ++ Sbjct: 220 KLDEERLKSIVCDAVEIEREFVCDALPCALVGMNRELMSQYIEFVADRLLTALGCGKVYG 279 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + NPF WM E+I L+ + NFFE RV EYQ+ + + Sbjct: 280 VS-NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 313 >gi|171687074|ref|XP_001908478.1| hypothetical protein [Podospora anserina S mat+] gi|170943498|emb|CAP69151.1| unnamed protein product [Podospora anserina S mat+] Length = 409 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 103/351 (29%), Positives = 164/351 (46%), Gaps = 27/351 (7%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + + A E + + D+ +L L P+KY W+ Y A + W E+ + Sbjct: 57 KKEEIKTVAAPEPKQELLDEPLLTENPQRFVLFPIKYHEVWQMYKKAEASFWTAEEIDLS 116 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W N L DDE+ I L FFA+S+ +V N+V + PE R + Q Sbjct: 117 KDLHDWS--NKLNDDEKFFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGFQIM 174 Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E +HS T+ +I + + + FN +P I KA+WAL++ Sbjct: 175 MENIHSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI------------S 222 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D D F Q L F V EG++F FA I L + M G+ + I RDE LH +F Sbjct: 223 DKDASFAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFAC 281 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + + HL + +Q ++ +A +E + E +P +G+N+ +QY++F+ Sbjct: 282 LLFS-------HLNNRPSKQLVEDIIRDAVTIEQEFLTEALPCALLGMNSNLMKQYIEFV 334 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 A+R +G + +++ T NPF +M E I L + NFFE RV EYQ+ + Sbjct: 335 ADRLLVALGNDKIYRST-NPFDFM-ENISLGGKTNFFEKRVGEYQKAGVMN 383 >gi|312381384|gb|EFR27142.1| hypothetical protein AND_06323 [Anopheles darlingi] Length = 390 Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 160/350 (45%), Gaps = 29/350 (8%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 +T LS ++ E+ + + +L + P++Y W+ Y A + W EV + Sbjct: 53 PSTALSEVE-PEQPFDPSIEPLLMDNPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLS 111 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ W + L ER I L FFA+S+ +V N+V + + E R + Q Sbjct: 112 KDMKDW---DSLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIA 168 Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E VHS + +I + D E FN +P + KA+WA+ + Sbjct: 169 MENVHSEMYSLLIDTYIRDPKERDFLFNAIETLPCVKRKADWAMNWI------------- 215 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + + + V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 216 SSKKANYGERIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 275 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + L K +++ ++ +A ++E + + +P +G+N QY++F+ Sbjct: 276 LMFKY-------LVQKPSRKRVTDIIRDAVMIEQEFLTKALPVDMLGMNCELMSQYIEFV 328 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 A+R ++G E ++ T+NPF +M E I L+ + NFFE +V EYQ+ + Sbjct: 329 ADRLLVELGCEKVYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 376 >gi|310798394|gb|EFQ33287.1| ribonucleotide reductase [Glomerella graminicola M1.001] Length = 413 Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 159/346 (45%), Gaps = 27/346 (7%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + D+ +L L P+KY W+ Y A + W E+ + DL Sbjct: 66 KPVVVPGIKEQEMDEPLLQENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHD 125 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W N + +DE+ I L FFA+S+ +V N+V + PE R + Q E +H Sbjct: 126 WN--NKINEDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIH 183 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S T+ +I + + + FN +P I KA+WAL++ ++ Sbjct: 184 SETYSLLIDTYIKEPAQRTYLFNAIDTIPCIRKKADWALKWI-------------SDEKS 230 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 V + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 231 SFAQRLVAFAAVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYS- 289 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL + +Q + ++ +A +E + E +P +G+N+ +QY++F+A+R Sbjct: 290 ------HLKNRPSKQVIQDIIVDAVQIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLL 343 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +G + ++K + NPF +M E I L + NFFE RV +YQ+ + Sbjct: 344 VALGNDKVYK-SSNPFDFM-ENISLGGKTNFFEKRVADYQKAGVMN 387 >gi|156058956|ref|XP_001595401.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980] gi|154701277|gb|EDO01016.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980 UF-70] Length = 407 Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 102/341 (29%), Positives = 164/341 (48%), Gaps = 27/341 (7%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A + D+ +L + L P+KY W+ Y A + W E+ + DL W Sbjct: 61 APGIKPEEADEPLLQENPNRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 118 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 N L DDER I L FFA+S+ +V N+V + PE R + Q E +HS T+ Sbjct: 119 NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 178 Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 +I + ++ + FN +P I KA+WA+++ Q D + F Q Sbjct: 179 SLLIDTYIKEQAQKTYLFNAIDTIPCIKKKADWAVKWIQ------------DKNSTFAQR 226 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L F V EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 227 LVAFAAV-EGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGLHTDFACLLFS----- 280 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 HL + +Q + ++ EA +E + E +P +G+N+ +QY++F+A+R +G Sbjct: 281 --HLKHRPSKQAVQDVITEAVEIEQEFLTEALPCALLGMNSTLMKQYIEFVADRLLVTLG 338 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 + ++K + NPF +M E I L + NFFE RV +YQ+ + Sbjct: 339 NDKVYK-SANPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 377 >gi|148234092|ref|NP_001079369.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus laevis] gi|27371032|gb|AAH41209.1| MGC52676 protein [Xenopus laevis] Length = 386 Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 28/346 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 +P K ++D+ +L + P++Y W+ Y A + W EV + DL Sbjct: 53 TPKSKAPKNPRLEDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQH 112 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +E+ I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 113 WES---LKKEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D E FN +P + KA+WAL + Q Sbjct: 170 SEMYSLLIDTYVKDPKEREYLFNAIETLPCVKKKADWALHWI-------------GDKQA 216 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 217 TFGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK- 275 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 HL K +++ ++ +A +E + E +P +G+N +QY++F+A+R Sbjct: 276 ------HLIRKPSEERVVELITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLL 329 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++G + +FK T NPF +M E I L+ + NFFE +V EYQ+ + Sbjct: 330 LELGFKKVFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQKMGVMS 373 >gi|70997335|ref|XP_753417.1| ribonucleotide reductase small subunit RnrA [Aspergillus fumigatus Af293] gi|66851053|gb|EAL91379.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus fumigatus Af293] gi|159126856|gb|EDP51972.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus fumigatus A1163] Length = 405 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 150/332 (45%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L L P+KY W+ Y A + W E+ + DL W N L DDER Sbjct: 72 NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N++ + PE R + Q E +HS T+ +I + Sbjct: 130 FISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIK 189 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 + + F+ +P I KA WA+++ + V + E Sbjct: 190 EPKQRTYLFDAIDTIPCIRKKAQWAMRWI-------------SDKESTFAQRLVAFAAVE 236 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + + HL + Sbjct: 237 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNHRPD 289 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ ++ EA +E + + +P +G+N+ QY++F+A+R +G + F + Sbjct: 290 KKVIEDIIVEAVAIEQEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYFN-SP 348 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV +YQ+ + Sbjct: 349 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 379 >gi|11878241|gb|AAG40862.1| ribonucleotide reductase [Emericella nidulans] Length = 406 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 94/355 (26%), Positives = 160/355 (45%), Gaps = 31/355 (8%) Query: 2 ANNTGLSPIQAGEKRVNV----DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 P++ + ++V ++ +L L P+KY W+ Y A + W Sbjct: 50 TKPATEKPVEPSKAALDVKAIEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAE 109 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + DL W N L +DER I R L FFA+S+ +V N++ + PE R + Sbjct: 110 EIDLSKDLHDWN--NRLNEDERYFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFY 167 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +H+ T+ +I + + + F+ +P I KA+WA+++ Q Sbjct: 168 GFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIKWIQD------ 221 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + V + EG++F FA I L + M G+ + I RDE LH Sbjct: 222 -------KESTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLH 274 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 +F + + HL + ++ ++ EA +E + + +P +G+NA Q Sbjct: 275 TDFACLLFS-------HLNWRPSKKVVEDIIVEAVAIEKEFLTDALPCALLGMNAKLMCQ 327 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 Y++F+A+R +G + F T NPF +M E I L + NFFE RV +YQ+ + Sbjct: 328 YIEFVADRLLVALGNKEYFNAT-NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 380 >gi|169613737|ref|XP_001800285.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15] gi|111061216|gb|EAT82336.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15] Length = 409 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 93/342 (27%), Positives = 153/342 (44%), Gaps = 28/342 (8%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A + + +L + L P+KY W+ Y A + W E+ + DL W + Sbjct: 61 APTIKEEEAHEPLLQENPNRFVLFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNKR 120 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIV-LAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L DDER I L FFA+S+ +V N+V + PE R + Q E +HS T Sbjct: 121 --LNDDERFFISHVLAFFAASDGIVNENLVDERFSSEVQIPEARCFYGFQIMMENIHSET 178 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + + + FN +P I KA+WAL++ Sbjct: 179 YSLLIDTYISEPRQRTYLFNAIDNIPCIRKKADWALKWI-------------SDKNSTFA 225 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE +H +F + + Sbjct: 226 NRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLLFSL--- 282 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L T+ + + ++ EA +E + E +P +G+N+ QY++F+A+R + Sbjct: 283 ----LNTRPSKDAVKAIITEAVEIEQEFLTEALPCALLGMNSTLMCQYIEFVADRLLLAL 338 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G ++ T NPF +M E I L + NFFE RV +YQ+ + Sbjct: 339 GNTKVYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 378 >gi|296421312|ref|XP_002840209.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636423|emb|CAZ84400.1| unnamed protein product [Tuber melanosporum] Length = 397 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 101/332 (30%), Positives = 159/332 (47%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L L P+KY W+ Y A + W+ E+ + D+ W + L DDER Sbjct: 66 DEPILTENKHRFVLFPIKYHEIWQMYKKAEASFWVAEEIDLSKDMHDWSDR--LNDDERY 123 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+V + PE R + Q E VHS T+ +I + Sbjct: 124 FISHVLAFFAASDGIVNENLVQRFSNEVQIPEARCFYGFQIMMENVHSETYSLLIDTYIK 183 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D + F+ +P I KA+WA+++ + D + F Q L F V E Sbjct: 184 DPKQRTYLFDAIDTIPCIKKKADWAIRWIE------------DRNSTFAQRLVAFAAV-E 230 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G++ + I RDE LH +F + N HL + Sbjct: 231 GIFFSGSFASIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLFN-------HLNNRPS 283 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 QQ + ++ EA +E + E +P +G+N+ +QY++F+A+R +G + T Sbjct: 284 QQAVQDIIVEAVGIEQEFLTEALPCALLGMNSKLMKQYIEFVADRLLLSLGNPKFYNAT- 342 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV +YQ+ + Sbjct: 343 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 373 >gi|328855581|gb|EGG04707.1| hypothetical protein MELLADRAFT_49061 [Melampsora larici-populina 98AG31] Length = 385 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 88/333 (26%), Positives = 151/333 (45%), Gaps = 27/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L L P+KY W Y A + W E+ + D+ W+ N L DDE+ Sbjct: 52 EEPLLKEDGHRFVLFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWE--NRLNDDEKH 109 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N++ + E R + Q E +HS + +I + Sbjct: 110 FIKHVLAFFAASDGIVNENLIERFSGEVQAAEARCFYGFQIMMENIHSEVYSLLIDTYVR 169 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 + E F+ +P I KA+WAL++ Q + + + E Sbjct: 170 EPIERSHLFDAIDTIPCIRKKADWALKWI-------------SDKQSTFGERLIAFAAVE 216 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + + HL + Sbjct: 217 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLERRPH 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + ++ +A +E + + +P +G+NA QY++F+A+R +G + + E Sbjct: 270 PDTVQAIISQAVEIEKEFLSDALPCKLIGMNADLMCQYIEFVADRLLVALGNDKFYN-AE 328 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E+I L + NFFE RV++Y + + Sbjct: 329 NPFDFM-EMISLSGKTNFFEKRVSDYAKAGVMT 360 >gi|326917964|ref|XP_003205263.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like [Meleagris gallopavo] Length = 353 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 94/339 (27%), Positives = 160/339 (47%), Gaps = 28/339 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E + + ++ +L + P+++ W+ Y A + W EV + DL W N Sbjct: 26 ENGLKLHEEPLLRKNPRRFVIFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 82 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 83 LKPDEKYFISHILAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEMYSL 142 Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D + FN +P + KA+WAL++ + + Sbjct: 143 LIDTYIKDPEKRDFLFNAIETMPCVKKKADWALKWI-------------EDRHSTFGERV 189 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 190 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFHY------ 243 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 L + +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G Sbjct: 244 -LVNRPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLMELGFS 302 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +F + ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 303 KVF-HAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 339 >gi|169779219|ref|XP_001824074.1| ribonucleoside-diphosphate reductase small chain [Aspergillus oryzae RIB40] gi|238499845|ref|XP_002381157.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus flavus NRRL3357] gi|83772813|dbj|BAE62941.1| unnamed protein product [Aspergillus oryzae] gi|220692910|gb|EED49256.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus flavus NRRL3357] Length = 405 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 96/355 (27%), Positives = 155/355 (43%), Gaps = 31/355 (8%) Query: 2 ANNTGLSPIQAGEK----RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT 57 T P + K + ++ +L L P+KY W+ Y A + W Sbjct: 50 TKTTVEKPTEVSSKIASIKEMEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAE 109 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 E+ + DL W N L DDER I R L FFA+S+ +V N++ + PE R + Sbjct: 110 EIDLSKDLHDWH--NRLNDDERFFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFY 167 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSF 174 Q E +H+ T+ +I + + + F+ +P I KA+WA+++ Q S Sbjct: 168 GFQIMIENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIQDQES--- 224 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 V + EG++F FA I L + M G+ + I RDE LH Sbjct: 225 ----------TFGQRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLH 274 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 +F + + HL + Q ++ EA +E + + +P +G+N+ Q Sbjct: 275 TDFACLLFS-------HLNNRPDPQIVEDVIVEAVSIEKEFLTDALPCALLGMNSNLMCQ 327 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 Y++F+A+R +G F T NPF +M I L + NFFE RV +YQ+ + Sbjct: 328 YIEFVADRLLVALGNNKYFNAT-NPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 380 >gi|121713826|ref|XP_001274524.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus clavatus NRRL 1] gi|119402677|gb|EAW13098.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus clavatus NRRL 1] Length = 405 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 89/332 (26%), Positives = 150/332 (45%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L L P+KY W+ Y A + W E+ + DL W N L DDER Sbjct: 72 NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N++ + PE R + Q E +HS T+ +I + Sbjct: 130 FISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIK 189 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 + + F+ +P I KA WA+++ + V + E Sbjct: 190 EPKQRAYLFDAIDTIPCINKKAQWAMRWI-------------SDKESSFGQRLVAFAAVE 236 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + + HL + Sbjct: 237 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNNRPD 289 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ ++ EA +E + + +P +G+N+ QY++F+A+R +G + + + Sbjct: 290 KKVVEDIIVEAVAIEQEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYYN-SP 348 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV +YQ+ + Sbjct: 349 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 379 >gi|71043760|ref|NP_001020911.1| ribonucleoside-diphosphate reductase subunit M2 [Rattus norvegicus] gi|77416595|sp|Q4KLN6|RIR2_RAT RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|68533806|gb|AAH99082.1| Ribonucleotide reductase M2 [Rattus norvegicus] gi|149051013|gb|EDM03186.1| rCG61374 [Rattus norvegicus] Length = 390 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 157/343 (45%), Gaps = 28/343 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + +++++ +L + P++Y W+ Y A + W EV + D+ W+ Sbjct: 60 SKAPTKPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE- 118 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L DER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 119 --ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 176 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D E FN +P + KA+WAL++ + Sbjct: 177 YSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWI-------------GDKEATYG 223 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 224 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 279 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 HL K +Q+ + ++ + +E + E +P +G+N +QY++F+A+R ++ Sbjct: 280 ---HLVHKPSEQRVKEIITNSVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 336 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 G +FK ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 337 GFNKIFKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377 >gi|150863757|ref|XP_001382334.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis CBS 6054] gi|149385013|gb|ABN64305.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis CBS 6054] Length = 417 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 98/343 (28%), Positives = 158/343 (46%), Gaps = 27/343 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + E + D+ +L + L P+KY W+ Y A + W E+ + D+ W Sbjct: 79 VHRHELKAMEKDEPLLMENTRRFVLFPIKYNEVWQMYKKAEASFWTAEEIDLSKDITDWN 138 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L D+ER I R L FFA+S+ +V N+V + PE + + Q E +HS Sbjct: 139 --NRLNDNERFFISRILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSE 196 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 T+ +I S D E FN +P I KA+WAL++ D Sbjct: 197 TYSLLIDSYIKDPKEADFLFNAIDNIPCIRKKADWALRWI-------------SDDDALF 243 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 244 GERLVAFAAVEGIFFSGSFASIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLFS--- 300 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 HL + + ++ EA +E + + +P +G+NA QY++F+A+R Sbjct: 301 ----HLQNRPDAEIVEKIITEAVKIEKEFFTDALPSSLLGMNAELMCQYVEFVADRLLVA 356 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G + ++ T NPF +M E I L + NFFE RV++YQ+ + Sbjct: 357 LGNKKVYNVT-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 397 >gi|301774462|ref|XP_002922647.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like [Ailuropoda melanoleuca] Length = 387 Score = 331 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 159/342 (46%), Gaps = 28/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E D++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 57 DTNENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 114 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 115 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 173 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + + Sbjct: 174 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWI-------------EDRKSTFG 220 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 221 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 277 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++ Sbjct: 278 ----LVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVEL 333 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G +F+ ENPF +M E I L+ + NFFE RV EYQ+ A + Sbjct: 334 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 373 >gi|224046583|ref|XP_002198998.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 362 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 97/346 (28%), Positives = 163/346 (47%), Gaps = 28/346 (8%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +S A E ++D++ +L + P++Y W+ Y A + W EV + DL Sbjct: 28 MSSSSAAENGSDLDEEPLLRKNHRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP 87 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E V Sbjct: 88 HW---NKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENV 144 Query: 127 HSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS + +I + D + FN +P + KA+WAL++ + + Sbjct: 145 HSEMYSLLIDTYIKDPKKRDFLFNAIETMPCVKKKADWALKWI-------------EDRE 191 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + V + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 192 STFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFH 251 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 L + +++ ++ A +E + E +P G +G+N +QY++F+A+R Sbjct: 252 Y-------LVNRPSEERVCEIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRL 304 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 ++G +F ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 305 LMELGFSKVFNV-ENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 348 >gi|225451453|ref|XP_002269951.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147804660|emb|CAN64484.1| hypothetical protein VITISV_012640 [Vitis vinifera] Length = 329 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 86/336 (25%), Positives = 156/336 (46%), Gaps = 29/336 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ ++ +L D + P++Y WE Y A + W EV + D W++ LT D Sbjct: 3 SIPEEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWEN---LTSD 59 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+ + + E R + Q E +HS + ++ S Sbjct: 60 EKHFISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLES 119 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E F+ +P + KA WAL++ E + + + Sbjct: 120 YIKDPKEKNRLFHAIDTIPCVAKKAQWALRWIDG--------------SETFAERLLAFA 165 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F F I L + M G+ + I RDE LH +F + + ++ Sbjct: 166 CVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------N 218 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ + ++ ++ +E + + +P VG+N+ QY++F+A+R +G ++ Sbjct: 219 KLSEERVKAIVADSVDIEREFVCDALPCALVGMNSALMSQYIEFVADRLLGALGYGKMYN 278 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + NPF WM E+I L+ + NFFE RV EYQ+ + + Sbjct: 279 VS-NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312 >gi|118087248|ref|XP_418364.2| PREDICTED: hypothetical protein [Gallus gallus] Length = 353 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 95/342 (27%), Positives = 161/342 (47%), Gaps = 28/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 A E + ++ +L + P+++ W+ Y A + W EV + DL W Sbjct: 23 SAAENGLKPHEEPLLRKNPRRFVIFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 80 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 81 -NKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEM 139 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + + Sbjct: 140 YSLLIDTYIKDPEKRDFLFNAIETMPCVKKKADWALKWI-------------EDRESTFG 186 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 187 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFHY--- 243 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L + +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++ Sbjct: 244 ----LVNRPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLMEL 299 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G +F + ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 300 GFSKVF-HAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 339 >gi|52077136|dbj|BAD46182.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group] gi|52077275|dbj|BAD46317.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group] gi|186920364|gb|ACC95435.1| ribonucleotide diphosphate reductase small subunit 1 [Oryza sativa Japonica Group] Length = 339 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L S+ + P++Y WE Y A + W EV + D W L+ DER Sbjct: 14 EEPLLAESSERFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHW--DAALSPDERH 71 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F VP++ KA+WA+++ E + V + E Sbjct: 132 DGAEKDRLFRAIDTVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVE 177 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + + ++ K Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRG-------KLD 230 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + R ++ +A +E + + +P VG+N QY++F+A+R +G + ++ Sbjct: 231 EARVREIVADAVDIEREFVCDALPVALVGMNGDLMSQYIEFVADRLLMALGCKKMYNVA- 289 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV +YQ+ + + Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 321 >gi|119478853|ref|XP_001259462.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya fischeri NRRL 181] gi|119407616|gb|EAW17565.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya fischeri NRRL 181] Length = 405 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 150/332 (45%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L L P+KY W+ Y A + W E+ + DL W N L DDER Sbjct: 72 NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N++ + PE R + Q E +HS T+ +I + Sbjct: 130 FISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIK 189 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 + + F+ +P I KA WA+++ + V + E Sbjct: 190 EPKQRTYLFDAIDTIPCIAKKAQWAMRWI-------------SDKESTFAQRLVAFAAVE 236 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + + HL + Sbjct: 237 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HLNHRPD 289 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ ++ EA +E + E +P +G+N+ QY++F+A+R +G + + + Sbjct: 290 KKVVEDIIVEAVAIEQEFLTEALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYYN-SS 348 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV +YQ+ + Sbjct: 349 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 379 >gi|75224904|sp|Q6Y657|RIR2B_ARATH RecName: Full=Putative ribonucleoside-diphosphate reductase small chain B; AltName: Full=Ribonucleoside-diphosphate reductase R2B subunit; AltName: Full=Ribonucleotide reductase small subunit B gi|37729626|gb|AAO62422.1| ribonucleotide reductase small subunit [Arabidopsis thaliana] Length = 333 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 90/336 (26%), Positives = 156/336 (46%), Gaps = 28/336 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ ++ +L D + P++Y WE Y A + W EV + D W+ N LT+D Sbjct: 3 SMPEEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTND 60 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER IK L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 61 ERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDT 120 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E F +P +T KA WA+++ + + V + Sbjct: 121 YIKDNKERDHLFRAIETIPCVTKKAEWAMKWING--------------SQSFAERIVAFA 166 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F F I L + M G+ + I RDE LH +F + + ++ T Sbjct: 167 CVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLR-------T 219 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K + + + ++ +A +E + + +P VG+N QY++F+A+R +G ++ Sbjct: 220 KLDEDRLKAIVCDAVEIEREFVCDALPCALVGMNRELMSQYIEFVADRLLAALGCAKVYG 279 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + NPF WM E+I L+ + NFFE RV EYQ+ + + Sbjct: 280 VS-NPFDWM-ELISLQGKTNFFEKRVGEYQKASIMS 313 >gi|118089007|ref|XP_419948.2| PREDICTED: similar to small subunit ribonucleotide reductase isoform 2 [Gallus gallus] Length = 384 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 91/335 (27%), Positives = 156/335 (46%), Gaps = 28/335 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 +++ +L + P++Y W+ Y A + W EV + DL W+S L +E Sbjct: 62 AEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPEE 118 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 119 KYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTY 178 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D E FN +P + KA+WA+++ + + V + Sbjct: 179 IKDSKEREFLFNAIETLPCVKKKADWAIRWI-------------GDKKATYGERVVAFAA 225 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 226 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLIRK 278 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +++ + ++ A L+E + E +P +G+N +QY++F+A+R ++G ++K Sbjct: 279 PSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFRKIYKV 338 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 339 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 371 >gi|302904131|ref|XP_003049009.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256729943|gb|EEU43296.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 389 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 103/343 (30%), Positives = 164/343 (47%), Gaps = 27/343 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++A + D+ +L L P+KY W+ Y A + W E+ + DL W Sbjct: 45 LKAKWEEAEEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN 104 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N LT DE+ I L FFA+S+ +V N+V + PE R + Q E +HS Sbjct: 105 --NRLTSDEQFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSE 162 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 T+ +I + + + FN +P I KA+WA+++ Q D D F Sbjct: 163 TYSLLIDTYIKEPSQRTYLFNAIETIPCIRKKADWAIRWIQ------------DKDSSFA 210 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 Q L F V EG++F FA I L + M G+ + I RDE LH +F + + +K Sbjct: 211 QRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHSHLK 269 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 + +Q + ++ +A +E + E +P +G+NA +QY++F+A+R Sbjct: 270 G-------RASKQVIQDIITDAVTIEQEFLTEALPCALLGMNADLMKQYIEFVADRLLVA 322 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G E ++K + NPF +M E I L + NFFE RV +YQ+ L Sbjct: 323 LGNEKVYK-SANPFDFM-ENISLGGKTNFFEKRVGDYQKAGVL 363 >gi|241166485|ref|XP_002409876.1| ribonucleotide reductase, beta subunit, putative [Ixodes scapularis] gi|215494664|gb|EEC04305.1| ribonucleotide reductase, beta subunit, putative [Ixodes scapularis] Length = 376 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 95/337 (28%), Positives = 154/337 (45%), Gaps = 28/337 (8%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + D+ +L + P+ Y W Y A + W EV + DL W +GL Sbjct: 51 ELEKQDEPLLRENPRRFVMFPIVYEDIWRMYKKAEASFWTVEEVDLGKDLPHW---DGLK 107 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +ER I L FFA+S+ +V N+V + + E R + Q E VHS + +I Sbjct: 108 PEERHFISHILAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQMAIENVHSEMYSLLI 167 Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 + D E FN +P I KA+WAL + + V Sbjct: 168 DTYIKDPSERDRLFNAVETMPCIKRKADWALNWI-------------SNRSATFGERIVA 214 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++F FA I L + M G+ + I RDE LH +F + + HL Sbjct: 215 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFS-------HL 267 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 K Q + R ++ +A ++E + + +P +G+N ++Y++F+A+R ++G E + Sbjct: 268 VNKPSQARVRQIICDAVVIEQEFLTDALPVALIGMNCELMKRYIEFVADRLLVELGCEKV 327 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 + +ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 328 YN-SENPFDFM-EHISLEGKTNFFEKRVGEYQKAGVM 362 >gi|146418573|ref|XP_001485252.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC 6260] gi|146390725|gb|EDK38883.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC 6260] Length = 418 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 92/332 (27%), Positives = 154/332 (46%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + + P+KY W+ Y A + W E+ + D+ W N L D+ER Sbjct: 90 EEPLLMENTRRFVMFPIKYHEIWKMYKKAEASFWTAEEIDLGKDMHDWN--NRLNDNERY 147 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 148 FISRILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIK 207 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA+WAL++ D + V + E Sbjct: 208 DPKEADFLFNAIENIPCIKKKADWALRWIND-------------DDALFGERLVAFAAVE 254 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G++ + I RDE LH +F + + HL + Sbjct: 255 GIFFSGSFASIFWLKKRGLMPGLSFSNELICRDEGLHTDFACLLFS-------HLQNRPD 307 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + ++ EA +E + + +P +G+N QY++F+A+R +G + ++ Sbjct: 308 PEIVEKIITEAVDIEKEFFTDALPISLLGMNCKLMCQYVEFVADRLLVALGNKKIYNVA- 366 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 367 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 397 >gi|255954081|ref|XP_002567793.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255] gi|211589504|emb|CAP95650.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255] Length = 400 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 94/365 (25%), Positives = 156/365 (42%), Gaps = 41/365 (11%) Query: 2 ANNTGLSPIQAGEKRVNV--------------DDKRMLNARSDVNQLLPLKYGWAWEKYL 47 N L P+ ++ + +L + P+KY W+ Y Sbjct: 35 KENASLKPVDTPIEKPTEKALENKPLTVKELEATEPLLQENPHRFVMFPIKYHEIWQMYK 94 Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 A + W E+ + DL W N L DDER I L FFA+S+ +V N+V Sbjct: 95 KAEASFWTAEEIDLSKDLHDWH--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSAE 152 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQ 164 + PE R + Q E +HS T+ +I + + + F+ +P IT KANWA++ Sbjct: 153 VQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCITKKANWAIR 212 Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 + S V + EG++F FA I L + M G+ Sbjct: 213 WINDRES-------------TFASRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSN 259 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 + I RDE LH +F + + H+ + + ++ EA +E + + +P Sbjct: 260 ELISRDEGLHTDFACLLFS-------HMNHRPDPKVVEEIIVEAVGIEQEFLTDALPCAL 312 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 +G+N+ QY++F+A+R +G + + + NPF +M E I L + NFFE RV +YQ Sbjct: 313 LGMNSKLMCQYIEFVADRLLVALGNKKYYN-SANPFDFM-ESISLAGKTNFFEKRVGDYQ 370 Query: 345 QGAEL 349 + + Sbjct: 371 KAGVM 375 >gi|316971821|gb|EFV55552.1| ribonucleotide reductase R2 subunit [Trichinella spiralis] Length = 366 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 162/351 (46%), Gaps = 28/351 (7%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 + +P++ ++ ++ +L + LLPL+Y W Y A + W EV ++ Sbjct: 29 DDPTTPMEQDAAAIDNCEEPLLRSNPKRFVLLPLEYPDIWAMYKKAEASFWTVEEVDLRK 88 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D W L DE+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 89 DANDWA---KLNKDEKHFISHVLAFFAASDGIVFENLVERFSQEIQVTEARFFYGFQIAI 145 Query: 124 EAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 E VHS + +I + D E FN +P + KA+WAL++ SP Sbjct: 146 ENVHSEMYSLLIDTYIRDPVERDFLFNAIETIPCVKKKADWALRWIGDRQSP-------- 197 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 + V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 198 -----FCERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 252 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 + + +K K + + R ++ EA +E + + +P +G+N QY++++A Sbjct: 253 LYSHLKK-------KPTEDRVRQIITEAVSIEQEFLTDALPVRLIGMNCVLMSQYIEYVA 305 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 +R ++G ++ +ENPF +M E+I L+ + NFFE RV EYQ+ + Sbjct: 306 DRLLVELGCSKVYN-SENPFDFM-EMISLEGKTNFFEKRVGEYQKAGVMAD 354 >gi|89268988|emb|CAJ81953.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana) tropicalis] gi|89269815|emb|CAJ81580.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana) tropicalis] Length = 386 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 94/343 (27%), Positives = 156/343 (45%), Gaps = 28/343 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + D+ +L + P++Y W+ Y A + W EV + DL W+S Sbjct: 56 SKAPKDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES 115 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L +E+ I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 116 ---LKAEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEM 172 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D E FN +P + KA+WAL++ Q Sbjct: 173 YSLLIDTYIKDPKEREYLFNAIETLPCVKKKADWALRWI-------------SDKQATYG 219 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 220 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 275 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 HL K +++ ++ +A +E + E +P +G+N +QY++F+A+R ++ Sbjct: 276 ---HLVNKPSEERVVQLITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLLLEL 332 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 G +FK T NPF +M E I L+ + NFFE +V EYQ+ + Sbjct: 333 GFNKVFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQKMGVMS 373 >gi|56118690|ref|NP_001007890.1| ribonucleotide reductase M2, gene 2 [Xenopus (Silurana) tropicalis] gi|51258920|gb|AAH80161.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana) tropicalis] Length = 386 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 94/343 (27%), Positives = 156/343 (45%), Gaps = 28/343 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + D+ +L + P++Y W+ Y A + W EV + DL W+S Sbjct: 56 SKAPKDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES 115 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L +E+ I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 116 ---LKAEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEM 172 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D E FN +P + KA+WAL++ Q Sbjct: 173 YSLLIDTYIKDPKEREYLFNAIETLPCVKKKADWALRWI-------------GDKQATYG 219 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 220 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 275 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 HL K +++ ++ +A +E + E +P +G+N +QY++F+A+R ++ Sbjct: 276 ---HLVNKPSEERVVQLITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLLLEL 332 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 G +FK T NPF +M E I L+ + NFFE +V EYQ+ + Sbjct: 333 GFNKVFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQKMGVMS 373 >gi|45360749|ref|NP_989048.1| ribonucleotide reductase M2, gene 1 [Xenopus (Silurana) tropicalis] gi|38174078|gb|AAH61353.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana) tropicalis] Length = 378 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 28/339 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + D+ +L +LP++Y W+ Y A + W EV + DL W+ L Sbjct: 52 KDPRIQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLPHWE---AL 108 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +ER I L FFA+S+ +V N+V + + E R + Q E +HS + + Sbjct: 109 KPEERYFISYVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 168 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + D E FN +P + KA WAL++ +P + V Sbjct: 169 IDTYIKDPKEREFLFNAIETLPCVKKKAEWALRWISDREAP-------------FCERIV 215 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I L + M G+ + I RDE LH +F + H Sbjct: 216 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFK-------H 268 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + K +Q+ R ++ +A +E + E +P +G+N +QY++F+A+R ++G + Sbjct: 269 VVHKPSEQRVREIIIDAVKIEQEFLTEALPVELIGMNCKLMKQYIEFVADRLLLELGFKK 328 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +FK +ENPF +M E I L+ + NFFE +V EYQ+ + Sbjct: 329 IFK-SENPFDFM-ENISLEGKTNFFEKKVAEYQKMGVMS 365 >gi|327261309|ref|XP_003215473.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 1 [Anolis carolinensis] Length = 394 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 94/336 (27%), Positives = 154/336 (45%), Gaps = 28/336 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N D+ +L + P++Y W+ Y A + W EV + DL W+S L D Sbjct: 71 NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 127 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 128 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 187 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E FN +P + KA+WA+++ + V + Sbjct: 188 YIKDPKEREYLFNAIETLPCVKRKADWAMRWI-------------GDKHATYGERVVAFA 234 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 235 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 287 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G ++K Sbjct: 288 KPSEERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK 347 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 348 -AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 381 >gi|315041979|ref|XP_003170366.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma gypseum CBS 118893] gi|311345400|gb|EFR04603.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma gypseum CBS 118893] Length = 408 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 97/343 (28%), Positives = 157/343 (45%), Gaps = 27/343 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++A + ++ +L L P+KY W+ Y A + W E+ + D+ W Sbjct: 65 VKAKTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L DDER I L FFA+S+ +V N++ + PE R + Q E +HS Sbjct: 125 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 T+ +I + ++ + F +P I KA+WA+++ Q D D F Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKDSTFA 230 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 Q L F V EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 231 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS--- 286 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 HL + ++ EA +E + + +P +G+NA QY++F+A+R Sbjct: 287 ----HLNHRPEPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 342 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G + + T NPF +M I L + NFFE RV +YQ+ + Sbjct: 343 LGNKKFYN-TTNPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 383 >gi|148232385|ref|NP_001085389.1| ribonucleotide reductase M2, gene 1 [Xenopus laevis] gi|48735122|gb|AAH72071.1| MGC78958 protein [Xenopus laevis] Length = 406 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 95/338 (28%), Positives = 160/338 (47%), Gaps = 28/338 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + D+ +L +LP++Y W+ Y A + W EV + DL W++ L Sbjct: 80 KDPLIQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---L 136 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +ER I L FFA+S+ +V N+V + + E R + Q E +HS + + Sbjct: 137 KPEERYFIAYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLL 196 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + D E FN +P + KA W+L++ +P + V Sbjct: 197 IDTYIKDPKEREFLFNAIETLPCVKKKAEWSLRWISDREAP-------------YCERLV 243 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I L + M G+ + I RDE LH +F + H Sbjct: 244 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFK-------H 296 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + K +Q+ R ++ +A +E + E +P +G+N +QY++F+A+R ++G + Sbjct: 297 VVHKPSEQRVREIIIDAVKIEQEFLTEALPVELIGMNCTLMKQYIEFVADRLLLELGFKK 356 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +FK +ENPF +M E I L+ + NFFE +V EYQ+ + Sbjct: 357 IFK-SENPFDFM-ENISLEGKTNFFEKKVGEYQKMGVM 392 >gi|118500933|gb|ABK97635.1| ribonucleoside diphosphate reductase beta subunit [Allochromatium vinosum DSM 180] Length = 280 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 187/280 (66%), Positives = 233/280 (83%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +D+NQL+P KY WAW+KYL AC NHWMP E+ M DLALWK +GLT+DERL++KRNLGF Sbjct: 1 ADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNADLALWKDPHGLTEDERLIVKRNLGF 60 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 F++++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA+H+H +QY++ SLGLDEGE+FNM Sbjct: 61 FSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVVESLGLDEGEIFNM 120 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 YREVP++ KA WAL +TQ L+ P F TGT + DQ+ L +L FYV+FEG++FY GF QI Sbjct: 121 YREVPAVARKAEWALPFTQHLADPHFQTGTPENDQKLLCELVAFYVIFEGIFFYVGFVQI 180 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 LS+GR NKM G AEQ+QYI+RDES+H+NFGIDVINQIKIENPHLWT +F+Q+ M+ EA Sbjct: 181 LSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQIKIENPHLWTPDFRQELVGMIREA 240 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 LE YAH+TMP+G +GLNA E Y+ FIANRRC QIG Sbjct: 241 VELEARYAHDTMPRGVLGLNAQMFEDYLHFIANRRCAQIG 280 >gi|46122063|ref|XP_385585.1| hypothetical protein FG05409.1 [Gibberella zeae PH-1] Length = 399 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 102/334 (30%), Positives = 162/334 (48%), Gaps = 27/334 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 +D+ +L L P+KY W+ Y A + W E+ + DL W N LT DE Sbjct: 64 EEDEPILQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLTSDE 121 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + I L FFA+S+ +V N+V + PE R + Q E +HS T+ +I + Sbjct: 122 QYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTY 181 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D + FN +P I KA+WA+++ Q D + F Q L F V Sbjct: 182 IKDPAQRTYLFNAVDTIPCIRKKADWAIRWIQ------------DKNSTFAQRLVAFAAV 229 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + M G++ + I RDE LH +F + + +K + Sbjct: 230 -EGIFFSGAFASIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLHSHLKG-------R 281 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +Q + ++ +A +E + E +P +G+N+ +QY++F+A+R +G E ++K Sbjct: 282 ASKQMIQDIITDAVSIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALGNEKVYKS 341 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 T NPF +M E I L + NFFE RV +YQ+ L Sbjct: 342 T-NPFDFM-ENISLGGKTNFFEKRVADYQKAGVL 373 >gi|212274629|ref|NP_001130908.1| hypothetical protein LOC100192012 [Zea mays] gi|195636980|gb|ACG37958.1| ribonucleoside-diphosphate reductase small chain [Zea mays] Length = 339 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 150/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +L SD + P++Y WE Y A + W EV + D W L+ DER Sbjct: 14 QEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHW--DAALSPDERH 71 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQAAEARAFYGFQIAIENIHSEMYSLLLETYIR 131 Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D + LF VP++ KA+WA+++ E + V + E Sbjct: 132 DGTEKDRLFRAIETVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVE 177 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + + ++ K Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRG-------KLD 230 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + R ++ +A +E + + +P VG+N QY++F+A+R +G ++ Sbjct: 231 ESRVREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGHRKMYNVA- 289 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV EYQ+ + + Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 321 >gi|300676950|gb|ADK26821.1| ribonucleotide reductase M2 [Zonotrichia albicollis] Length = 390 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 93/340 (27%), Positives = 157/340 (46%), Gaps = 28/340 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +R +++ +L + P++Y W+ Y A + W EV + DL W+S Sbjct: 63 AERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES--- 119 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L +E+ I L FFA+S+ +V N+V + + E R + Q E +HS + Sbjct: 120 LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSL 179 Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D E FN +P + KA+WA+ + + + Sbjct: 180 LIDTYIKDSQEREFLFNAIETLPCVKKKADWAMCWI-------------GDKKATYGERV 226 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 227 VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK------- 279 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 HL K +++ R ++ A L+E + E +P +G+N +QY++F+A+R ++G Sbjct: 280 HLIHKPSEERVREIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFN 339 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++K ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 340 KIYK-AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377 >gi|321476700|gb|EFX87660.1| hypothetical protein DAPPUDRAFT_306462 [Daphnia pulex] Length = 378 Score = 330 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 96/338 (28%), Positives = 158/338 (46%), Gaps = 28/338 (8%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R N ++ +L + L P++Y W+ Y A + W EV + DL W + L Sbjct: 51 RDNDQNEPLLRSNPSRFVLFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLKDW---DNLQ 107 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +ER + L FFA+S+ +V N+V + + PE R + Q E +HS + +I Sbjct: 108 PNERHFVSHVLAFFAASDGIVNENLVERFAQEVQVPEARCFYGFQIAMENIHSEMYSLLI 167 Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 + D E FN +P I KA WA+++ G KDA + V Sbjct: 168 ETYIKDSAERTRLFNAVETMPCIAKKAEWAMKWI----------GNKDA---PYSERIVA 214 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 215 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACVMFK-------HL 267 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 K +++ +++ A +E + + +P +G+N QY++F+A+R ++G L Sbjct: 268 VNKPPKERIIEIINNAVKIEQEFLTDALPVEMIGMNCRLMRQYIEFVADRLLLELGCTKL 327 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + +ENPF +M E I L+ + NFFE +V EYQ+ + Sbjct: 328 YN-SENPFDFM-EHISLEGKTNFFEKKVGEYQKAGVMN 363 >gi|307110551|gb|EFN58787.1| hypothetical protein CHLNCDRAFT_34102 [Chlorella variabilis] Length = 335 Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 87/340 (25%), Positives = 157/340 (46%), Gaps = 29/340 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E+ + + +L + D + P+KY WE Y A + W EV + D+ W+ Sbjct: 6 EQSLEDSQEPLLASNDDRFVMFPIKYRDIWEMYKKAEASFWTAEEVDLGSDVKDWE---R 62 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L+DDER + L FFA+S+ +V N+ + + PE R + Q E +HS + Sbjct: 63 LSDDERHFVSHVLAFFAASDGIVNENLGARFMQEVQVPEARAFYGFQIAMENIHSEMYSL 122 Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 ++ + D E F+ VP + KA+WAL++ + + Sbjct: 123 LLEAYIKDPKEKDKLFHAIDTVPVVRKKAHWALKWING--------------SDLFSERL 168 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 + + EG++F F I L + M G+ + I RDE LH +F + Sbjct: 169 IAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYR------- 221 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 H+ + +++ ++ +A +E + + +P +G+N+ QY++F+A+R +G Sbjct: 222 HIHNRLSEERVAEIVTQAVEIEKEFICDALPVDLIGMNSRLMGQYIEFVADRLLVALGNP 281 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++ + NPF WM E+I L+ + NFFE RV +YQ+ + Sbjct: 282 KVYNVS-NPFDWM-ELISLQGKTNFFEKRVGDYQKAGVMN 319 >gi|50545856|ref|XP_500466.1| YALI0B03630p [Yarrowia lipolytica] gi|49646332|emb|CAG82692.1| YALI0B03630p [Yarrowia lipolytica] Length = 403 Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 94/337 (27%), Positives = 158/337 (46%), Gaps = 27/337 (8%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R + D+ +L L P++Y W+ Y A + W E+ + D+ W+ N L Sbjct: 71 RESEKDEPLLKENHRRFVLFPIQYHEIWQMYKKAEASFWTAEEIDLGKDMGDWE--NRLN 128 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +DER I L FFA+S+ +V N+V + PE + + Q E +HS T+ +I Sbjct: 129 NDERFFISHVLAFFAASDGIVNENLVERFSGEVQAPEAKCFYGFQIMMENIHSETYSLLI 188 Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 + D E FN +P I KA+WAL++ ++ + + Sbjct: 189 DTYIKDPKERTYLFNAIETIPCIKKKADWALKWI-------------SDEESTFGERLIA 235 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++F FA I L + M G+ + I RDE LH +F + + HL Sbjct: 236 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS-------HL 288 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 + ++ ++ EA +E + + +P G +G+NA QY++F+A+R +G + Sbjct: 289 ENRPSKKIVEDVIVEAVGIEQEFLTDALPCGLLGMNAKLMCQYIEFVADRLLVALGNSKV 348 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 + T NPF +M E I L + NFFE RV++YQ+ + Sbjct: 349 YNST-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 383 >gi|194690416|gb|ACF79292.1| unknown [Zea mays] gi|194704028|gb|ACF86098.1| unknown [Zea mays] gi|195619132|gb|ACG31396.1| ribonucleoside-diphosphate reductase small chain [Zea mays] gi|223943167|gb|ACN25667.1| unknown [Zea mays] Length = 339 Score = 330 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 150/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +L SD + P++Y WE Y A + W EV + D W L+ DER Sbjct: 14 QEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHW--DAALSPDERH 71 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131 Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D + LF VP++ KA+WA+++ E + V + E Sbjct: 132 DGTEKDRLFRAIETVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVE 177 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + + ++ K Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRG-------KLD 230 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + R ++ +A +E + + +P VG+N QY++F+A+R +G ++ Sbjct: 231 ESRVREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGHRKMYNVA- 289 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV EYQ+ + + Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 321 >gi|212723480|ref|NP_001131892.1| hypothetical protein LOC100193273 [Zea mays] gi|194692834|gb|ACF80501.1| unknown [Zea mays] gi|195624040|gb|ACG33850.1| ribonucleoside-diphosphate reductase small chain [Zea mays] Length = 339 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 89/332 (26%), Positives = 154/332 (46%), Gaps = 28/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L SD + P+++ WE Y A + W EV + D W L+ DER Sbjct: 15 EPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWDE--ALSPDERHF 72 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + D Sbjct: 73 ISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRD 132 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E F VP++ KA+WA+++ E + V + EG Sbjct: 133 DVEKDRLFRAIDTVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVEG 178 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE LH +F + + ++ +K + Sbjct: 179 IFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDVLR-------SKLDE 231 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + RT++ +A +E + + +P VG+N QY++F+A+R +G + ++ T N Sbjct: 232 ARVRTIVADAVDIEREFVCDALPVSLVGMNGDLMSQYIEFVADRLLMALGCKKMYNVT-N 290 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF WM E+I L+ + NFFE RV +YQ+ + + Sbjct: 291 PFDWM-ELISLQGKTNFFEKRVGDYQKASVMN 321 >gi|327261313|ref|XP_003215475.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 3 [Anolis carolinensis] Length = 391 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 93/333 (27%), Positives = 153/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L + P++Y W+ Y A + W EV + DL W+S L DE+ Sbjct: 71 DEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPDEKY 127 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 128 FISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDTYIK 187 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P + KA+WA+++ + V + E Sbjct: 188 DPKEREYLFNAIETLPCVKRKADWAMRWI-------------GDKHATYGERVVAFAAVE 234 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 235 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPS 287 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G ++K E Sbjct: 288 EERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK-AE 346 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 347 NPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 378 >gi|154296564|ref|XP_001548712.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana B05.10] gi|150843273|gb|EDN18466.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana B05.10] Length = 407 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 101/341 (29%), Positives = 163/341 (47%), Gaps = 27/341 (7%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A + D+ +L + L P+KY W+ Y A + W E+ + DL W + Sbjct: 61 APGIKPEEADEPLLQENPNRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNER 120 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 L DDER I L FFA+S+ +V N+V + PE R + Q E +HS T+ Sbjct: 121 --LNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 178 Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 +I + ++ + FN +P I KA+WA+++ Q D + F Q Sbjct: 179 SLLIDTYIKEQSQKTYLFNAIDTIPCIKKKADWAVKWIQ------------DKNSTFAQR 226 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L F V EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 227 LVAFAAV-EGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGLHTDFACLLFS----- 280 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 HL + +Q + ++ EA +E + E +P +G+N+ +QY++F+A+R +G Sbjct: 281 --HLKHRPSKQAVQDVITEAVEIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLLSLG 338 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 + +K + NPF +M E I L + NFFE RV +YQ+ + Sbjct: 339 NDKYYK-SANPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 377 >gi|330949820|gb|EGH50080.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae Cit 7] Length = 359 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 175/293 (59%), Positives = 231/293 (78%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT + D+ Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y+ Sbjct: 307 QIKIENPHLWDAEMKKEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYL 359 >gi|77748199|gb|AAI06683.1| MGC78958 protein [Xenopus laevis] Length = 406 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 95/338 (28%), Positives = 160/338 (47%), Gaps = 28/338 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K + D+ +L +LP++Y W+ Y A + W EV + DL W++ L Sbjct: 80 KDPLIQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---L 136 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +ER I L FFA+S+ +V N+V + + E R + Q E +HS + + Sbjct: 137 KPEERYFISYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLL 196 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + D E FN +P + KA W+L++ +P + V Sbjct: 197 IDTYIKDPKEREFLFNAIETLPCVKKKAEWSLRWISDREAP-------------YCERLV 243 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I L + M G+ + I RDE LH +F + H Sbjct: 244 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFK-------H 296 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + K +Q+ R ++ +A +E + E +P +G+N +QY++F+A+R ++G + Sbjct: 297 VVHKPSEQRVREIIIDAVKIEQEFLIEALPVELIGMNCTLMKQYIEFVADRLLLELGFKK 356 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +FK +ENPF +M E I L+ + NFFE +V EYQ+ + Sbjct: 357 IFK-SENPFDFM-ENISLEGKTNFFEKKVGEYQKMGVM 392 >gi|327261311|ref|XP_003215474.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 2 [Anolis carolinensis] Length = 390 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 94/336 (27%), Positives = 154/336 (45%), Gaps = 28/336 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N D+ +L + P++Y W+ Y A + W EV + DL W+S L D Sbjct: 67 NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 123 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 124 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 183 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E FN +P + KA+WA+++ + V + Sbjct: 184 YIKDPKEREYLFNAIETLPCVKRKADWAMRWI-------------GDKHATYGERVVAFA 230 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 231 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVH 283 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G ++K Sbjct: 284 KPSEERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK 343 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 344 -AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377 >gi|255530602|ref|YP_003090974.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM 2366] gi|255343586|gb|ACU02912.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM 2366] Length = 324 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 93/334 (27%), Positives = 153/334 (45%), Gaps = 30/334 (8%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L D LLP+KY WE Y + + W E+ + DD W + L D ER Sbjct: 3 EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FF++S+ +V N+ + + PE R + Q E +HS T+ +I + Sbjct: 60 HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D E F+ VP + KA WAL++ D + V + Sbjct: 120 KDPDEKDRLFHAIETVPCVKKKAEWALRWI---------------DNGSFAERLVAFAAV 164 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++F F I L + M G+ + I RDE H F + +K K Sbjct: 165 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGSHCEFACLLYGMLK-------NKL 217 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q++ ++ +A +E + + +P +G+NA QY++F+A+R ++G ++ T Sbjct: 218 SQEQVHGIIRDAVEIEKEFVTDALPVALIGMNAKLMSQYIEFVADRWLQELGYSKIYNAT 277 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E+I L+ + NFFE RV +YQ+ L Sbjct: 278 -NPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLT 309 >gi|10432587|dbj|BAB13815.1| ribonucleotide reductase small subunit [Lentinula edodes] Length = 418 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 154/347 (44%), Gaps = 27/347 (7%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 L GE + ++ +L L P++Y W+ Y A + W E+ + D Sbjct: 75 AALQKRFVGEVELPESEEPLLLESRRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDLSKD 134 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W N L D ER I R L FFA+S+ +V N++ + E R + Q E Sbjct: 135 LHDWN--NRLNDSERFFISRVLAFFAASDGIVNENLLERFSNEVQVAEARCFYGFQIMME 192 Query: 125 AVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 +HS T+ +I + D E F+ +P I KA WAL++ Sbjct: 193 NIHSETYSLLIDTYIKDPVERDFLFDAIETIPCIKRKAEWALRWI-------------SD 239 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 + + V + EG++F FA I + + M G+A + I RDE +H +F + Sbjct: 240 EHSVFGERLVAFAAVEGIFFSGSFASIFWMKKRGLMPGLAFSNELISRDEGMHTDFACLL 299 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 + HL + ++ EA +E + + +P +G+NA QY++F+A+ Sbjct: 300 FS-------HLRRRPHPDTVERIIKEAVAIEQEFLTDALPVSLIGMNATLMCQYIEFVAD 352 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 R +G + L+ T NPF +M +I L+ + NFFE RV++Y + Sbjct: 353 RLLVALGNKKLYNST-NPFDFMD-MISLQGKTNFFEKRVSDYSKAGV 397 >gi|224048725|ref|XP_002196356.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Taeniopygia guttata] Length = 390 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 92/339 (27%), Positives = 157/339 (46%), Gaps = 28/339 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +R +++ +L + P++Y W+ Y A + W EV + DL W+S L Sbjct: 64 ERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---L 120 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +E+ I L FFA+S+ +V N+V + + E R + Q E +HS + + Sbjct: 121 KPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLL 180 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + D E FN +P + KA+WA+ + + + V Sbjct: 181 IDTYIKDSKEREFLFNAIETLPCVKKKADWAMCWI-------------GDKKATYGERVV 227 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I L + M G+ + I RDE LH +F + H Sbjct: 228 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------H 280 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L K +++ + ++ A L+E + E +P +G+N +QY++F+A+R ++G Sbjct: 281 LIHKPSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNK 340 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++K ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 341 IYK-AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377 >gi|266918|sp|P07201|RIR2_SPISO RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit; AltName: Full=p41 gi|10342|emb|CAA38919.1| M2 (small) subunit of ribonucleotide reductase [Spisula solidissima] Length = 384 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 95/352 (26%), Positives = 158/352 (44%), Gaps = 28/352 (7%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T L + + + +L +LP++Y W+ Y A + W EV + Sbjct: 42 TQKTPLKQEIKPVVKKSQQVEPLLADNPRRFVVLPIQYHDIWKMYKKAEASFWTAEEVDL 101 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+A W+S L +E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 102 SKDMAHWES---LKKEEKHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQI 158 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS + +I + D E FN +P + KA+WA+++ Sbjct: 159 AMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADWAMRWIND---------- 208 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 D + V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 209 ---DSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNELISRDEGLHCDFA 265 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + HL K Q++ ++ EA +E + E +P +G+N QY++F Sbjct: 266 CLMFS-------HLVNKPSQERIHQIIDEAVKIEQVFLTEALPCRLIGMNCDLMRQYIEF 318 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +A+R ++ + L+ ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 319 VADRLLLELKCDKLYN-KENPFDFM-EHISLEGKTNFFEKRVGEYQKMGVMS 368 >gi|242095388|ref|XP_002438184.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor] gi|241916407|gb|EER89551.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor] Length = 339 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L SD + P+++ WE Y A + W EV + D W L+ DER Sbjct: 14 EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSSDARHWDE--ALSPDERH 71 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D+ E F VP++ KA+WA+++ E + V + E Sbjct: 132 DDAEKDRLFRAIDTVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVE 177 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + ++ +K Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYELLR-------SKLD 230 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + R ++ +A +E + + +P VG+N QY++F+A+R +G + ++ T Sbjct: 231 EARVREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGCKKMYNAT- 289 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV +YQ+ + + Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMN 321 >gi|170089003|ref|XP_001875724.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82] gi|164648984|gb|EDR13226.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82] Length = 422 Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats. Identities = 89/340 (26%), Positives = 153/340 (45%), Gaps = 27/340 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 GE + ++ +L L P++Y W+ Y A + W E+ + DL W Sbjct: 75 FVGEVDLPESEEPLLKESKRRFVLFPIQYNEIWQMYKKAEASFWTAEEMDLSKDLHDWN- 133 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N + D+ER I L FFA+S+ +V N++ + E R + Q E +HS T Sbjct: 134 -NRMNDNERHFISHVLAFFAASDGIVNENLLERFSNEVQAAEARCFYGFQIMMENIHSET 192 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I S D + F+ +P I KA WAL++ S Sbjct: 193 YSLLIDSYIKDPAQREYLFDAIETIPCIKRKAEWALKWISDQES-------------TFA 239 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I + + M G+ + I RDE +H +F + + +K Sbjct: 240 ERLVAFAAVEGIFFSGSFASIFWMKKRGLMPGLTFSNELISRDEGMHTDFACLLFSHLKR 299 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 + + + ++ EA +E + + +P +G+NA QY++F+A+R + Sbjct: 300 -------RPHPEVVKHIIVEAVKIEQEFLTDALPVKLIGMNADLMCQYIEFVADRLLVSL 352 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 G E + T NPF +M +I L+ + NFFE RV++Y + Sbjct: 353 GNEKHYNKT-NPFDFMD-MISLQGKTNFFEKRVSDYSKAG 390 >gi|331245491|ref|XP_003335382.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309314372|gb|EFP90963.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 380 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 88/334 (26%), Positives = 147/334 (44%), Gaps = 27/334 (8%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D + +L L P+KY W Y A + W E+ + D+ W N L DE+ Sbjct: 46 DQEPLLKEDGHRFVLFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDW--DNKLNADEK 103 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 IK L FFA+S+ +V N++ + E R + Q E +HS + +I + Sbjct: 104 HFIKHVLAFFAASDGIVNENLIERFSGEVQVAEARCFYGFQIMMENIHSEVYSLLIDTYV 163 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 + E F+ +P I KA+WAL + + + + + Sbjct: 164 REPTERAHLFDAIDTIPCIRKKADWALTWI-------------SDKKSTFGERLIAFAAV 210 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 211 EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFT-------HLERRP 263 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + ++ +A +E + + +P +G+NA QY++F+A+R +G E + T Sbjct: 264 HPDTVQAIIAQAVEIEKEFLSDALPCKLIGMNADLMCQYIEFVADRLLVALGNEKFYNAT 323 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E+I L + NFFE RV++Y + + Sbjct: 324 -NPFDFM-EMISLSGKTNFFEKRVSDYAKAGVMT 355 >gi|242076364|ref|XP_002448118.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor] gi|241939301|gb|EES12446.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor] Length = 339 Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats. Identities = 88/333 (26%), Positives = 151/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L SD + P+++ WE Y A + W EV + D W L+ DER Sbjct: 14 EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHW--DAALSPDERH 71 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F VP++ KA+WA+++ E + V + E Sbjct: 132 DGAEKDRLFRAIETVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVE 177 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + + ++ K Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRG-------KLD 230 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + R ++ +A +E + + +P VG+N QY++F+A+R +G + ++ Sbjct: 231 ESRVREIVADAVDIEREFVCDALPVALVGMNGALMSQYIEFVADRLLMALGHKKMYNVA- 289 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV EYQ+ + + Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 321 >gi|18859327|ref|NP_571525.1| ribonucleoside-diphosphate reductase subunit M2 [Danio rerio] gi|292624782|ref|XP_002665783.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Danio rerio] gi|3914657|sp|P79733|RIR2_DANRE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase protein R2 class I; AltName: Full=Ribonucleotide reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|1695831|gb|AAB37103.1| ribonucleotide reductase protein R2 class I [Danio rerio] gi|27881838|gb|AAH44355.1| Ribonucleotide reductase M2 polypeptide [Danio rerio] gi|56207929|emb|CAI21240.1| ribonucleotide reductase M2 polypeptide [Danio rerio] gi|182889152|gb|AAI64707.1| Rrm2 protein [Danio rerio] Length = 386 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 157/343 (45%), Gaps = 28/343 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 Q+ K+ V+++ +L + P++Y W+ Y A + W EV + DL W Sbjct: 56 QSKAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHW-- 113 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 + L D+ER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 114 -DSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEM 172 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D E FN +P + KA+WAL + Sbjct: 173 YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWI-------------GDKNARYG 219 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 220 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 275 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 HL K ++ + ++ A +E + + +P +G+N +QY++F+A+R ++ Sbjct: 276 ---HLINKPSEETVKKIIMNAVEIEQEFLTDALPVKLIGMNCDLMKQYIEFVADRLLLEL 332 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 G + ++ ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 333 GFDKVY-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 373 >gi|49899161|gb|AAH75746.1| Ribonucleotide reductase M2 polypeptide [Danio rerio] Length = 386 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 158/343 (46%), Gaps = 28/343 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 Q+ K+ V+++ +L + P++Y W+ Y A + W EV + DL W Sbjct: 56 QSKAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHW-- 113 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 + L D+ER I L FFA+S+ +V N+V + + E R + Q E +HS Sbjct: 114 -DSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEM 172 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D E FN +P + KA+WAL + Sbjct: 173 YSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWI-------------GDKNARYG 219 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 220 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK---- 275 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 HL +K ++ + ++ A +E + + +P +G+N +QY++F+A+R ++ Sbjct: 276 ---HLISKPSEETVKKIIMNAVEIEQEFLTDALPVKLIGMNCDLMKQYIEFVADRLLLEL 332 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 G + ++ ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 333 GFDKVY-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 373 >gi|72008642|ref|XP_780110.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I isoform 1 [Strongylocentrotus purpuratus] gi|115928579|ref|XP_001179668.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I [Strongylocentrotus purpuratus] Length = 412 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 101/354 (28%), Positives = 166/354 (46%), Gaps = 30/354 (8%) Query: 2 ANNTGLSPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 A + + P +G+K V N +D+ +L + + P++Y W+ Y A + W EV Sbjct: 66 AKSKLVKPENSGKKVVSFNKEDEPLLRENARRFVIFPIQYHDIWQFYKKAEASFWTAEEV 125 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + DL W + L D+ER I L FFA+S+ +V N+V + + E R + Sbjct: 126 DLSKDLDHWAN---LKDEERHFISHVLAFFAASDGIVNENLVERFSQEVQVAEARCFYGF 182 Query: 120 QAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176 Q E +HS + +I + D LFN +P +T KA WAL + + Sbjct: 183 QIAIENIHSEMYSLLIDTYIKDSVQRDFLFNAVETLPCVTKKAQWALNWIGS-------- 234 Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236 D V + EG++F FA I L + M G+ + I RDE LH + Sbjct: 235 -----DSADFGTRIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCD 289 Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296 F + HL K ++ + ++ EA +E + + +P +G+NA ++Y+ Sbjct: 290 FACLMFK-------HLNNKPDEEHVQGIIKEAVAIEQEFLTDALPCSLIGMNAVLMKRYI 342 Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +F+A+R ++G ++K ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 343 EFVADRLLVELGCGKIWKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 394 >gi|146090952|ref|XP_001466403.1| ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] gi|321399462|emb|CBZ08664.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] Length = 392 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 90/361 (24%), Positives = 162/361 (44%), Gaps = 37/361 (10%) Query: 2 ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52 A + + P+ AG + + N +++ + L P++Y W KY + Sbjct: 43 AEDLVMKPVAAGTEVLTADKVAKGTNAEEEPLQQENPLRYVLFPIQYHDIWRKYKEQESC 102 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE Sbjct: 103 IWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPE 159 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTL 169 R + Q E +HS T+ ++ + D E + + +P I KA WA+++ Sbjct: 160 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWI--- 216 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 Q+ + + EG++F F + L + M G+ + I R Sbjct: 217 -----------GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISR 265 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE LH +F + N H+ K +++ ++ +A +E + + +P +G+NA Sbjct: 266 DEGLHTDFACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNA 319 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 QY++F+A+R +G E ++ T+ PF +M E+I L+ + NFFE +V EYQ+ + Sbjct: 320 ELMAQYIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVM 377 Query: 350 K 350 Sbjct: 378 S 378 >gi|45184688|ref|NP_982406.1| AAL136Cp [Ashbya gossypii ATCC 10895] gi|44980034|gb|AAS50230.1| AAL136Cp [Ashbya gossypii ATCC 10895] Length = 422 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 98/337 (29%), Positives = 157/337 (46%), Gaps = 27/337 (8%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + ++ +L L P+KY W+ Y A + W E+ + D+ W N +T Sbjct: 91 KEQEKNEPLLMENKRRFVLFPIKYHDIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMT 148 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ++ER I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I Sbjct: 149 ENERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLI 208 Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 + D E FN +P I KA WA+++ Q D D F + L F Sbjct: 209 DTYIKDPKEADHLFNAIETIPEIKEKAEWAIRWIQ------------DKDALFAERLVAF 256 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 V EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 257 AAV-EGIFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLF-------AHL 308 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 K + ++ EA +E Y + +P +G+N+ QY++F+A+R +G + Sbjct: 309 NNKPDTEIVEKIITEAVEIEKRYFQDAIPVALLGMNSSLMNQYVEFVADRLLVALGNKKY 368 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 + + NPF +M E I L + NFFE RV++YQ+ + Sbjct: 369 YNVS-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 403 >gi|929959|gb|AAA74020.1| ribonuleotide reductase small subunit [Urechis caupo] Length = 399 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 88/334 (26%), Positives = 155/334 (46%), Gaps = 28/334 (8%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L + P++Y W+ Y A + W EV + D++ W+ L +E+ Sbjct: 75 EEEPLLRDNPRRFVVFPIQYNDIWQMYKKAEASFWTAEEVDLSKDISDWE---KLKSEEK 131 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 + L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 132 HFVSHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGYQIAVENIHSEMYSLLIDTYV 191 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D E FN +P + KA+WAL++ +Q + V + Sbjct: 192 KDPTERDFLFNAIETMPCVKEKADWALRWIND-------------EQSSFGERVVAFAAV 238 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++F FA I L + M G+ + I RDE LH +F + + HL K Sbjct: 239 EGIFFSGSFASIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFS-------HLKNKP 291 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q++ ++ +A +E ++ E +P +G+N QY++F+A+R ++G ++ Sbjct: 292 SQERVYDIIRDAVRIEQSFLTEALPVNLIGMNCKLMAQYIEFVADRLLLELGCPKIWNV- 350 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ENPF +M I L+ + NFFE RV EYQ+ + Sbjct: 351 ENPFDFMDN-ISLEGKTNFFEKRVGEYQKMGVMS 383 >gi|302497417|ref|XP_003010709.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371] gi|291174252|gb|EFE30069.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371] Length = 408 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 157/351 (44%), Gaps = 30/351 (8%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + P + ++ +L L P+KY W+ Y A + W E+ + Sbjct: 60 AETQVVKP---KTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 116 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W N L DDER I L FFA+S+ +V N++ + PE R + Q Sbjct: 117 SKDIHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 174 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS T+ +I + ++ + F +P I KA+WA+++ Q Sbjct: 175 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 223 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 D D F Q L F V EG++F FA I L + M G+ + I RDE LH +F Sbjct: 224 -DKDSTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 281 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + HL + ++ EA +E + + +P +G+NA QY++F Sbjct: 282 CLLFS-------HLNYRPDPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEF 334 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +A+R +G + + T NPF +M I L + NFFE RV +YQ+ + Sbjct: 335 VADRLLVALGNKKFYN-TTNPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 383 >gi|300709535|ref|YP_003735349.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus jeotgali B3] gi|299123218|gb|ADJ13557.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus jeotgali B3] Length = 330 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 160/327 (48%), Positives = 226/327 (69%), Gaps = 2/327 (0%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 + D N++LP+ Y WA E Y + N+W P EVPM DD+ W++ + L+ +ER +++ Sbjct: 6 TESHHDPNKILPIDYDWAREYYKAGVANNWTPEEVPMADDVHQWEN-DELSSEERQLVEW 64 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 NLGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y SLG D Sbjct: 65 NLGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEY 124 Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 L+ MY +P+I AK + + TQ + P F + + +EFL+DL FYV+ EG++FY G Sbjct: 125 LYGMYDRIPAIEAKDEFVVDLTQVIDDPDFEISSDEDVREFLRDLVGFYVIMEGIFFYAG 184 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 FA +L L R KMVG+ EQ++YIMRDESLHLNFG+D+IN ++ EN +WT F+ + + Sbjct: 185 FAMMLGLKRQGKMVGVGEQFEYIMRDESLHLNFGVDLINTVREENSGIWTDVFEAEIEGL 244 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 L EA LE YA E P+ +G+ +Y++++A+RR Q+G+EP++ T+NPFPWM+ Sbjct: 245 LREAVELERTYAREACPEEVLGMGPAQFAEYVEYVADRRLDQLGMEPVYD-TDNPFPWMA 303 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKW 351 E +DL KEKNFFET V EYQ G L+W Sbjct: 304 EQVDLNKEKNFFETNVAEYQSGGSLEW 330 >gi|322491821|emb|CBZ27094.1| ribonucleoside-diphosphate reductase small chain,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 392 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 157/353 (44%), Gaps = 28/353 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A + P+ + N +++ + L P++Y W KY + W E+ Sbjct: 51 VAPGAEVLPVDKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 110 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W L D ER IK L FFA S+ +V N+ + PE R + Q Sbjct: 111 LGNDMKDWA---ALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQ 167 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS T+ ++ + D E + + +P I KA WA+++ Sbjct: 168 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWI----------- 216 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 Q+ + + EG++F F + L + M G+ + I RDE LH +F Sbjct: 217 ---GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDF 273 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + N H+ K +++ ++ +A +E + + +P +G+NA QY++ Sbjct: 274 ACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIE 327 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 F+A+R +G E + T+ PF +M E+I L+ + NFFE +V EYQ+ + Sbjct: 328 FVADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 378 >gi|168031987|ref|XP_001768501.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680214|gb|EDQ66652.1| predicted protein [Physcomitrella patens subsp. patens] Length = 331 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 91/334 (27%), Positives = 151/334 (45%), Gaps = 29/334 (8%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 + +L + + P+KY WE Y A + W EV + D W++ LTDDER Sbjct: 6 QKEPILVENPNRFTMFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWET---LTDDER 62 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FFA+S+ +V N+ + + + PE R + Q E +HS + ++ + Sbjct: 63 HFISHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYI 122 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D+ E FN +P + KA+WAL++ + S + + + Sbjct: 123 KDQAEKSRLFNAIETIPCVARKADWALKWIDSAGS--------------FAERILAFACV 168 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++F F I L + M G+ + I RDE LH +F + L K Sbjct: 169 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTL-------LINKL 221 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +++ ++ EA +E + E + VG+N +Y+ F+A+R +G + Sbjct: 222 SEERVYEIVCEAVEIEREFVCEALSCDLVGMNKILMSEYIDFVADRLLVSLGYRKKYNAL 281 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV EYQ+ + + Sbjct: 282 -NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 313 >gi|326437649|gb|EGD83219.1| ribonucleotide reductase M2 B [Salpingoeca sp. ATCC 50818] Length = 408 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 89/331 (26%), Positives = 158/331 (47%), Gaps = 28/331 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L +LP+++ W Y A + W EV + DL W+ GL D E+ Sbjct: 86 EPLLRENPSRFVILPIQHRQVWSMYKKAVASFWTAEEVDLSRDLDHWR---GLKDTEQHF 142 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + PE R + Q E +HS + +I + D Sbjct: 143 IKHVLAFFAASDGIVNENLVERFMCEVQLPEARCFYGFQIMIENIHSEMYSLLIDTYIND 202 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P++ KA WA+++ D + + V + EG Sbjct: 203 PQEKHMLFNAVETLPAVKRKAEWAMRWI-------------DHKRASFAERVVAFAAVEG 249 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + + I RDE LH +F + + + + P + Sbjct: 250 IFFSGSFAAIFWLKKRGLMPGLTQSNELISRDEGLHCDFACLMFSMLHKKPP-------K 302 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ ++ +A +E + E +P +G+N+ +Y++F+++R +G + ++ T N Sbjct: 303 ERVIGIIMDAVEIEQEFLTEALPVSLLGMNSTLMREYIEFVSDRLLVSLGYDKVYNAT-N 361 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 PFP+M E I ++ + NFFE RV+EYQ+ + Sbjct: 362 PFPFM-ENISIEGKTNFFERRVSEYQKSGVM 391 >gi|145349720|ref|XP_001419276.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144579507|gb|ABO97569.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 329 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 159/347 (45%), Gaps = 37/347 (10%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +SP+ E ++ +D+R + P++Y WE Y A + W EV + DD+ Sbjct: 1 MSPLPLAEPLLDENDQR--------FTMFPIQYPQVWEMYKKAEASFWTAEEVDLSDDMK 52 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W++ LT DE+ + L FFA+S+ +V N+ + + PE R + Q E + Sbjct: 53 HWET---LTKDEKHFVSHVLAFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENI 109 Query: 127 HSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS + +I D E F +P + KA+WAL++ + Sbjct: 110 HSEMYSLLIDQYIKDPVEKDHLFRAIDTIPCVKKKADWALKWIDS--------------S 155 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + + + + EG++F F I L + M G+ + I RDE LH +F + + Sbjct: 156 DSFAERLLAFACIEGIFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLFS 215 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 L K ++ R ++ EA +E + +++P VG+NA Y++++A+ Sbjct: 216 M-------LNNKPSEETIRKIVTEAVEIEKEFVCDSLPCALVGMNAGMMSDYIEYVADHL 268 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +GL + T NPF WM E+I L+ + NFFE RV EYQ+ + Sbjct: 269 FCSLGLAKEYN-TTNPFDWM-ELISLQGKTNFFEKRVGEYQKAGVMN 313 >gi|18079279|ref|NP_525111.1| ribonucleoside diphosphate reductase small subunit [Drosophila melanogaster] gi|12644287|sp|P48592|RIR2_DROME RecName: Full=Ribonucleoside-diphosphate reductase subunit M2; AltName: Full=Ribonucleotide reductase small subunit gi|10727628|gb|AAF58599.2| ribonucleoside diphosphate reductase small subunit [Drosophila melanogaster] gi|15292183|gb|AAK93360.1| LD41588p [Drosophila melanogaster] gi|220946286|gb|ACL85686.1| CG8975-PA [synthetic construct] gi|220955972|gb|ACL90529.1| RnrS-PA [synthetic construct] Length = 393 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 88/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 62 MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L DDER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I + D + FN +P++ KA+WAL + + Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWI-------------SSKSANF 225 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ--- 282 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 HL + +++ ++ +A +E + + +P +G+N QY++F+A+R + Sbjct: 283 ----HLVQRPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +G+ ++ T+NPF +M E+I L + NFFE +V EYQ+ + Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVGEYQRMGVVS 380 >gi|156545974|ref|XP_001606963.1| PREDICTED: similar to ENSANGP00000013211 [Nasonia vitripennis] Length = 388 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 89/341 (26%), Positives = 154/341 (45%), Gaps = 28/341 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + + +L L P+++ W Y A + W EV + D+A W N Sbjct: 59 TPAFDPQLEPLLKENPGRFVLFPIQWPDIWHMYKKAEASFWTVEEVDLSKDMADW---NR 115 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L D+ER I L FFA+S+ +V N+V + + E R + Q E +HS + Sbjct: 116 LNDNERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQVAIENIHSEMYSL 175 Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D + FN +P + KANWAL + D + Sbjct: 176 LIDTYISDASQRQFLFNAIETLPCVAKKANWALNWI-------------SHDSATFAERV 222 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 + + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 223 IAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK------- 275 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 H+ K +++ +++ +A +E + + +P +G+N QY++F+A+R ++G Sbjct: 276 HIVQKPSEERVISIIKDAVTIEQEFLTDALPVEMIGMNCRLMCQYIEFVADRLLGELGCP 335 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 ++ +ENPF +M E I L+ + NFFE +V EYQ+ ++ Sbjct: 336 KVYN-SENPFDFM-EHISLEGKTNFFEKKVGEYQKWGVMQD 374 >gi|15232077|ref|NP_189342.1| TSO2 (TSO meaning 'ugly' in Chinese); oxidoreductase/ ribonucleoside-diphosphate reductase/ transition metal ion binding [Arabidopsis thaliana] gi|75273949|sp|Q9LSD0|RIR2C_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain C; AltName: Full=Ribonucleoside-diphosphate reductase TSO2 subunit; AltName: Full=Ribonucleotide reductase small subunit C gi|9279629|dbj|BAB01087.1| ribonucleotide reductase [Arabidopsis thaliana] gi|17380726|gb|AAL36193.1| putative ribonucleotide reductase small subunit [Arabidopsis thaliana] gi|21436297|gb|AAM51287.1| putative ribonucleotide reductase small subunit [Arabidopsis thaliana] gi|332643740|gb|AEE77261.1| Ribonucleoside-diphosphate reductase small chain C [Arabidopsis thaliana] Length = 332 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 86/336 (25%), Positives = 151/336 (44%), Gaps = 28/336 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ ++ +L D + P+ Y WE Y A + W EV + D W+ N L D Sbjct: 3 SMPEEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLNDG 60 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER IK L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 61 ERHFIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDT 120 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E F +P + KA WA+++ + + + + Sbjct: 121 YIKDNKERDHLFRAIETIPCVAKKAQWAMKWIDG--------------SQTFAERIIAFA 166 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F F I L + M G+ + I RDE LH +F + +K + Sbjct: 167 CVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLKTKLSE--- 223 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 ++ ++++ +A +E + + +P VG+N QY++F+A+R +G ++ Sbjct: 224 ----ERVKSIVCDAVEIEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYG 279 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 T NPF WM E+I L+ + NFFE RV +YQ+ + + Sbjct: 280 VT-NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 313 >gi|291244313|ref|XP_002742041.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Saccoglossus kowalevskii] Length = 463 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 161/344 (46%), Gaps = 28/344 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + ++ +L D + P+KY W+ Y A + W EV + DL W Sbjct: 131 LTQATTKDLEAEETLLKPNIDRFVVFPIKYQDIWKYYKKAQASFWTVEEVDLGKDLPDW- 189 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L ++ER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 190 --VKLKEEERRFISHVLAFFAASDGIVLENLVQRFSQEVQVAEARCFYGFQIAMENVHSE 247 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I + ++ E F+ +P + KA+WA+++ Q+ ++ Sbjct: 248 MYSLLIDAYIKEQEEKTRLFHAIDNMPCVKKKADWAIEWIQS-------------EESSF 294 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V + EG++F FA I + + G+ + I RDE LH +F + + Sbjct: 295 GERLVAFAAVEGIFFSGAFASIFWFKKRGLLPGLTFSNELISRDEGLHCDFACLIFS--- 351 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 HL K +++ R ++ +A +E + +E +P G +G+N Y++F+A+R + Sbjct: 352 ----HLTYKPSKERIRNIITQAVDIEKEFWNEALPVGLIGMNVTLMNYYVEFVADRLLLE 407 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + + ++ + ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 408 LNCDKVY-HRENPFDFM-ENISLEGKTNFFEKRVGEYQKANVMS 449 >gi|145580571|pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase Subunit R2 Length = 332 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 94/335 (28%), Positives = 155/335 (46%), Gaps = 28/335 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L +E Sbjct: 10 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 66 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 67 RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 126 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D E FN +P + KA+WAL++ + + V + Sbjct: 127 IKDPKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEATYGERVVAFAA 173 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 174 VEGIFFSGSFASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHK 226 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F Sbjct: 227 PSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVF-R 285 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 286 VENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 319 >gi|170032272|ref|XP_001844006.1| ribonucleoside-diphosphate reductase small chain [Culex quinquefasciatus] gi|167872122|gb|EDS35505.1| ribonucleoside-diphosphate reductase small chain [Culex quinquefasciatus] Length = 391 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 90/343 (26%), Positives = 156/343 (45%), Gaps = 28/343 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++AG+ + + +L + P++Y W+ Y A + W EV + DL W+ Sbjct: 60 LKAGQAPFDPSIEPLLKDNPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLGDWE 119 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L E+ I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 120 ---KLKSGEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 176 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I + D E FN +P + KA+WA+ + + Sbjct: 177 MYSLLIDTYIRDPKEREYLFNAIETLPCVKKKADWAMNWI-------------SSKHANF 223 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 224 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFRY-- 281 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 L K +++ ++ EA ++E + + +P +G+N QY++F+A+R + Sbjct: 282 -----LVQKPSKERVLEIIREAVVIEQEFLTKALPVDLLGMNCELMSQYIEFVADRLLLE 336 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G E ++ T+NPF +M E I L+ + NFFE +V EYQ+ + Sbjct: 337 LGNEKIYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 377 >gi|326472581|gb|EGD96590.1| ribonucleotide reductase small subunit RnrA [Trichophyton tonsurans CBS 112818] Length = 408 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 157/351 (44%), Gaps = 30/351 (8%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + P + ++ +L L P+KY W+ Y A + W E+ + Sbjct: 60 AETQVVKP---KTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 116 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W N L DDER I L FFA+S+ +V N++ + PE R + Q Sbjct: 117 SKDIHDWN--NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 174 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS T+ +I + ++ + F +P I KA+WA+++ Q Sbjct: 175 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 223 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 D + F Q L F V EG++F FA I L + M G+ + I RDE LH +F Sbjct: 224 -DKNSTFSQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 281 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + HL + ++ EA +E + + +P +G+NA QY++F Sbjct: 282 CLLFS-------HLNYRPDPNAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEF 334 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +A+R +G + + T NPF +M I L + NFFE RV +YQ+ + Sbjct: 335 VADRLLVALGNKKFYN-TTNPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 383 >gi|110763195|ref|XP_397443.3| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Apis mellifera] Length = 384 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 90/354 (25%), Positives = 160/354 (45%), Gaps = 28/354 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + N + + E + N + + +L + P+++ W+ Y A + W EV Sbjct: 44 VINTKAIQNMYLKENKFNPELEPLLKENPRRFVVFPIQWPDIWQMYKKAEASFWTVEEVD 103 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D+ W N LT E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 104 LSKDVFDW---NNLTASEKHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQ 160 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E VHS + +I + D E FN +P + KA+WAL + Sbjct: 161 VAMENVHSEMYSLLIDTYIADAKERDFLFNAIENLPCVAKKAHWALNWINH--------- 211 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 + + V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 212 ----ESATFPERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 267 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + H+ K ++ +++ +A +E + + +P +G+N QY++ Sbjct: 268 ACLMFK-------HIVQKPSCERVTSIIKDAVKIEQEFLTDALPVEMIGMNCKLMCQYIE 320 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 F+A+R ++G + ++ +ENPF +M E I L+ + NFFE +V EYQ+ ++ Sbjct: 321 FVADRLLVELGCKKIY-MSENPFDFM-EHISLEGKTNFFEKKVGEYQKWGVMQD 372 >gi|291388369|ref|XP_002710634.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Oryctolagus cuniculus] Length = 339 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 99/338 (29%), Positives = 160/338 (47%), Gaps = 28/338 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 N D++ +L S + P++Y W+ Y A + W EV + DL W N L Sbjct: 13 PDTNEDEEPLLKKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NRL 69 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS + + Sbjct: 70 TSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLL 129 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + D + FN +P + KA+WAL++ + + V Sbjct: 130 IDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFGERVV 176 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 177 AFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY------- 229 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G Sbjct: 230 LVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLMELGFSK 289 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 290 VFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 325 >gi|302783485|ref|XP_002973515.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii] gi|302787555|ref|XP_002975547.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii] gi|300156548|gb|EFJ23176.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii] gi|300158553|gb|EFJ25175.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii] Length = 347 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 161/346 (46%), Gaps = 30/346 (8%) Query: 8 SPIQAGEKRVNV-DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 SPI R+ ++ +L + P++Y WE Y A + W EV + D Sbjct: 9 SPIVDDGSRIKAPKEEPILADNPQRFCMFPIRYPRVWEMYKKAEASFWTAEEVDLSQDAK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+S LTD+E+ + L FFA+S+ +V N+ + + + PE R + Q E + Sbjct: 69 HWES---LTDNEKHFVSHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENI 125 Query: 127 HSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS + ++ + D + +LFN +P + KA+WAL++ + Sbjct: 126 HSEMYSLLLETYIKDNEVKAKLFNAIETIPCVAKKADWALRWIDS--------------S 171 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + + V + EG++F F I L + M G+ + I RDE LH +F + + Sbjct: 172 QSFAERIVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 231 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 + + K +++ + ++ +A +E + E + VG+NA QY+ F+A+R Sbjct: 232 LLNV-------KLDEKRVKEIVSDAVEIERQFVCEALSCDLVGMNARLMSQYIDFVADRL 284 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G LF NPF WM +I L+ + NFFE RV EYQ+ + + Sbjct: 285 MVVLGYNKLFNAI-NPFDWMD-LISLQGKTNFFEKRVGEYQKASVM 328 >gi|168049349|ref|XP_001777126.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671569|gb|EDQ58119.1| predicted protein [Physcomitrella patens subsp. patens] Length = 325 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 92/335 (27%), Positives = 151/335 (45%), Gaps = 29/335 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++ + +L + P+KY WE Y A + W EV + DL W+ LTD+E Sbjct: 1 MEQEPILAENPGRFCMFPIKYPQVWEMYKKAEASFWTAEEVDLSADLKHWE---ALTDNE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+ + + + PE R + Q E +HS + ++ + Sbjct: 58 RHFISHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAY 117 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D+ E FN +P +T KA WAL++ + S + + + Sbjct: 118 IKDQSEKHRLFNAIETIPCVTRKAEWALKWIDSSGS--------------FAERILAFAC 163 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F F I L + M G+ + I RDE LH +F + L K Sbjct: 164 VEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTL-------LNNK 216 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + + ++ EA +E + E + VG+N +Y+ F+A+R +G + Sbjct: 217 LSEDRVHEIVCEAVDIEREFVCEALSCDLVGMNKIMMSEYIDFVADRLLVSLGYNKRYNA 276 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV EYQ+ + + Sbjct: 277 R-NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 309 >gi|327298815|ref|XP_003234101.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum CBS 118892] gi|326464279|gb|EGD89732.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum CBS 118892] Length = 408 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 157/351 (44%), Gaps = 30/351 (8%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + P + ++ +L L P+KY W+ Y A + W E+ + Sbjct: 60 AETQVVKP---KTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 116 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W N L DDER I L FFA+S+ +V N++ + PE R + Q Sbjct: 117 SKDIHDWN--NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 174 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS T+ +I + ++ + F +P I KA+WA+++ Q Sbjct: 175 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 223 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 D + F Q L F V EG++F FA I L + M G+ + I RDE LH +F Sbjct: 224 -DKNSTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 281 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + HL + ++ EA +E + + +P +G+NA QY++F Sbjct: 282 CLLFS-------HLNYRPDPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEF 334 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +A+R +G + + T NPF +M I L + NFFE RV +YQ+ + Sbjct: 335 VADRLLVALGNKKFYN-TTNPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 383 >gi|195485577|ref|XP_002091148.1| GE13485 [Drosophila yakuba] gi|194177249|gb|EDW90860.1| GE13485 [Drosophila yakuba] Length = 393 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 88/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 62 MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L DDER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I + D + FN +P++ KA+WAL + + Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWI-------------SSKSANF 225 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ--- 282 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 HL + +++ ++ +A +E + + +P +G+N QY++F+A+R + Sbjct: 283 ----HLVQRPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +G+ ++ T+NPF +M E+I L + NFFE +V EYQ+ + Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVGEYQRMGVVS 380 >gi|195333568|ref|XP_002033462.1| GM20395 [Drosophila sechellia] gi|195582581|ref|XP_002081105.1| GD25870 [Drosophila simulans] gi|194125432|gb|EDW47475.1| GM20395 [Drosophila sechellia] gi|194193114|gb|EDX06690.1| GD25870 [Drosophila simulans] Length = 393 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 88/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 62 MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L DDER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I + D + FN +P++ KA+WAL + + Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWI-------------SSKSANF 225 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ--- 282 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 HL + +++ ++ +A +E + + +P +G+N QY++F+A+R + Sbjct: 283 ----HLVQRPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +G+ ++ T+NPF +M E+I L + NFFE +V EYQ+ + Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVAEYQRMGVVS 380 >gi|262263187|dbj|BAI48096.1| ribonucleotide reductase M2 [Sus scrofa] Length = 355 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 91/328 (27%), Positives = 152/328 (46%), Gaps = 28/328 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 +V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L + Sbjct: 49 SVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWET---LKPE 105 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 106 ERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT 165 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E FN +P + KA+WAL++ + + V + Sbjct: 166 YIKDSKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEATYGERVVAFA 212 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 213 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLH 265 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R ++G +F Sbjct: 266 KPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVF- 324 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTE 342 ENPF +M E I L+ + NFFE RV E Sbjct: 325 RVENPFDFM-ENISLEGKTNFFEKRVGE 351 >gi|41054952|ref|NP_955770.1| ribonucleoside-diphosphate reductase subunit M2 B [Mus musculus] gi|81885688|sp|Q6PEE3|RIR2B_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B; AltName: Full=TP53-inducible ribonucleotide reductase M2 B; AltName: Full=p53-inducible ribonucleotide reductase small subunit 2-like protein; Short=p53R2 gi|34786000|gb|AAH58103.1| Ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus] gi|74218244|dbj|BAE23760.1| unnamed protein product [Mus musculus] Length = 351 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 28/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + E V +++ +L S + P++Y W Y A + W EV + DL W Sbjct: 21 ETEENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 184 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K + + R ++ +A +E + E +P G +G+N +QY++F+A+R ++ Sbjct: 242 ----LVNKPSEDRVREIIADAVQIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLGEL 297 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 298 GFSKIFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337 >gi|291412327|ref|XP_002722439.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Oryctolagus cuniculus] Length = 400 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 90/354 (25%), Positives = 156/354 (44%), Gaps = 30/354 (8%) Query: 2 ANNTGLSPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 A T ++ ++ + + D+ +L ++ W + + W EV Sbjct: 59 APGTQMAAVRQKSPALASGMGDESGRRENPCRFSILTIESYGIWTRNKKGEASFWTAEEV 118 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D+ W+ L ++ER I L FFA+S+ +V N+V + + E R + Sbjct: 119 DLSKDIQHWE---ALKEEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGF 175 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTT 176 Q E +HS + +I + D E FN +P + KA+WAL++ Sbjct: 176 QIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI---------- 225 Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236 + + V + EG++F FA I L + M G+ + I RDE LH + Sbjct: 226 ---GDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 282 Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296 F + HL K +Q+ + ++ A +E + E +P +G+N +QY+ Sbjct: 283 FACLMFK-------HLVHKPSEQRVQEIIVNAVRIEQEFLTEALPVKLIGMNCALMKQYI 335 Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +F+A+R ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 336 EFVADRLLLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 387 >gi|297818266|ref|XP_002877016.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp. lyrata] gi|297322854|gb|EFH53275.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp. lyrata] Length = 329 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 86/333 (25%), Positives = 149/333 (44%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+ Y WE Y A + W EV + D W+ N L D ER Sbjct: 3 EEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NNLNDGERH 60 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 61 FIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIK 120 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F +P + KA WA+++ + + + + E Sbjct: 121 DNKERDHLFRAIETIPCVAKKAQWAMKWIDG--------------SQTFAERIIAFACVE 166 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + +K + Sbjct: 167 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLKTKLSE------ 220 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ ++++ +A +E + + +P VG+N QY++F+A+R +G ++ T Sbjct: 221 -ERVKSIVCDAVEIEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVT- 278 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV +YQ+ + + Sbjct: 279 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 310 >gi|156387375|ref|XP_001634179.1| predicted protein [Nematostella vectensis] gi|156221259|gb|EDO42116.1| predicted protein [Nematostella vectensis] Length = 384 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 93/354 (26%), Positives = 158/354 (44%), Gaps = 28/354 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M ++ + R N +D+ +L +LP++Y W+ Y A + W EV Sbjct: 44 MVSDRTPPKKSRAKSRFNTEDEPLLRENPHRFVILPIQYTEIWQMYKKAEASFWTAEEVD 103 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D + L D ER+ + L FFA+S+ +V N+V + + PE R + Q Sbjct: 104 LSKDSHDFA---KLNDHERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQ 160 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS + +I SL D+ E FN +P + KA+WAL + Sbjct: 161 IAIENIHSEMYSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWIN---------- 210 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 + + + + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 211 ---PQRASFGERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 267 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + L K ++ R ++ +A ++E + +P +G+N QY++ Sbjct: 268 ACLMYKY-------LVNKPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIE 320 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 F+A+R + + ++ ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 321 FVADRLLVALNCQKVYN-AENPFDFM-ENISLEGKTNFFEKRVGEYQKSGVMSD 372 >gi|156387377|ref|XP_001634180.1| predicted protein [Nematostella vectensis] gi|156221260|gb|EDO42117.1| predicted protein [Nematostella vectensis] Length = 341 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 156/343 (45%), Gaps = 28/343 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + R N +D+ +L +LP++Y W+ Y A + W EV + D + Sbjct: 11 SRAKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDFA- 69 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L DDER+ + L FFA+S+ +V N+V + + PE R + Q E +HS Sbjct: 70 --KLNDDERMFVSHVLAFFAASDGIVNENLVECFSQEVQIPEARCFYGFQIAIENIHSEM 127 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I SL D+ E FN +P + KA+WAL + + Sbjct: 128 YSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWIN-------------PQRASFG 174 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 175 ERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMYKY--- 231 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K ++ R ++ +A ++E + +P +G+N QY++F+A+R + Sbjct: 232 ----LVNKPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVAL 287 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + ++ ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 288 NCQKVYNV-ENPFDFM-ENISLEGKTNFFEKRVGEYQKSGVMS 328 >gi|322493026|emb|CBZ28311.1| ribonucleoside-diphosphate reductase small chain,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 388 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 156/353 (44%), Gaps = 28/353 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A + P + N +++ + L P++Y W KY + W E+ Sbjct: 47 VAPGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 106 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W L D ER IK L FFA S+ +V N+ + PE R + Q Sbjct: 107 LGNDMKDWA---ALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQ 163 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS T+ ++ + D E + + +P I KA WA+++ Sbjct: 164 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWI----------- 212 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 Q+ + + EG++F F + L + M G+ + I RDE LH +F Sbjct: 213 ---GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDF 269 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + N H+ K +++ ++ +A +E + + +P +G+NA QY++ Sbjct: 270 ACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIE 323 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 F+A+R +G E + T+ PF +M E+I L+ + NFFE +V EYQ+ + Sbjct: 324 FVADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 374 >gi|294659365|ref|XP_461732.2| DEHA2G04268p [Debaryomyces hansenii CBS767] gi|199433907|emb|CAG90185.2| DEHA2G04268p [Debaryomyces hansenii] Length = 426 Score = 325 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 92/332 (27%), Positives = 151/332 (45%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + L P+KY W+ Y A + W E+ + D W L ++ER Sbjct: 101 EEPLLIENTRRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLGKDTHDWNE--KLNNNERY 158 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 159 FISRILAFFAASDGIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYIK 218 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA+WAL++ D + V + E Sbjct: 219 DPKEADFLFNAIDNIPCIKKKADWALRWIND-------------DDALFGERLVAFAAVE 265 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + + HL + Sbjct: 266 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLQNRPD 318 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ EA +E + + +P +G+N QY++F+A+R +G + ++ T Sbjct: 319 AVIVERIITEAVTIEKEFFVDALPISLLGMNCNLMCQYVEFVADRLLVALGNKKVYNVT- 377 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 378 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 408 >gi|254572986|ref|XP_002493602.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR) complex [Pichia pastoris GS115] gi|238033401|emb|CAY71423.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR) complex [Pichia pastoris GS115] gi|328354568|emb|CCA40965.1| ribonucleoside-diphosphate reductase subunit M2 [Pichia pastoris CBS 7435] Length = 400 Score = 325 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 94/332 (28%), Positives = 153/332 (46%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L L PLKY W+ Y A + W E+ + DL W N + D+E+ Sbjct: 75 DEPLLVENKRRFVLFPLKYHDIWQMYKQAEASFWTAEEIDLGKDLHDWN--NRMNDNEKF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSAEVQLPEAKCFYGFQIMMENIHSETYSLLIDTYIK 192 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA+WA+++ D + V + E Sbjct: 193 DPKESEFLFNAIETIPCIKEKADWAMRWI-------------SDDDALFAERLVAFAAVE 239 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + + HL + Sbjct: 240 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLNNRAS 292 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ ++ EA +E Y + +P +G+N QY++F+A+R +G + ++ Sbjct: 293 EEIVEKIITEAVEIEKRYFTDALPVSLLGMNCSLMCQYVEFVADRLLVALGNKKVYNVN- 351 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382 >gi|149279601|ref|ZP_01885730.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter sp. BAL39] gi|149229637|gb|EDM35027.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter sp. BAL39] Length = 324 Score = 325 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 92/334 (27%), Positives = 153/334 (45%), Gaps = 30/334 (8%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L D LLP+KY WE Y + + W E+ + DD W + L D ER Sbjct: 3 EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FF++S+ +V N+ + + PE R + Q E +HS T+ +I + Sbjct: 60 HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D E F+ VP + KA WAL++ D + V + Sbjct: 120 KDPEEKDRLFHAIETVPCVKKKAEWALRWI---------------DNGNFAERLVAFAAV 164 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++F F I L + M G+ + I RDE H F + + +K K Sbjct: 165 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGSHCEFACLLYSMLK-------NKL 217 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++ ++ +A +E + + +P +G+NA QY++F+A+R ++G ++ T Sbjct: 218 SEEHVHGIIRDAVEIEKEFVTDALPVALIGMNAKLMSQYIEFVADRWLQELGYTKIYHAT 277 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E+I L+ + NFFE RV +YQ+ L Sbjct: 278 -NPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLT 309 >gi|158286793|ref|XP_308927.4| AGAP006818-PA [Anopheles gambiae str. PEST] gi|157020637|gb|EAA04227.4| AGAP006818-PA [Anopheles gambiae str. PEST] Length = 400 Score = 325 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 89/331 (26%), Positives = 153/331 (46%), Gaps = 28/331 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P++Y W+ Y A + W EV + D+ W++ L ER Sbjct: 81 EPLLRDNPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWET---LKPSERHF 137 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+V + + E R + Q E VHS + +I + D Sbjct: 138 ISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIRD 197 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WAL + + + + V + EG Sbjct: 198 SKEREFLFNAIETLPCVKRKADWALNWI-------------SSKKANFGERVVAFAAVEG 244 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + L K + Sbjct: 245 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKY-------LVQKPSK 297 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ ++ +A L+E + + +P +G+N QY++F+A+R ++G E ++ +T+N Sbjct: 298 ERVTEIIRDAVLIEQEFLTKALPVDMLGMNCDLMSQYIEFVADRLLLELGCEKIY-HTKN 356 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 PF +M E I L+ + NFFE +V EYQ+ + Sbjct: 357 PFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 386 >gi|7023557|dbj|BAA92005.1| unnamed protein product [Homo sapiens] Length = 351 Score = 325 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 161/342 (47%), Gaps = 28/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E + +++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 184 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 185 ERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K +++ R ++ +A +E + E +P G +G+N +QY++F+A+R ++ Sbjct: 242 ----LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGVNCILMKQYIEFVADRLLVEL 297 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 298 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337 >gi|110636874|ref|YP_677081.1| ribonucleoside-diphosphate reductase 1 subunit beta [Cytophaga hutchinsonii ATCC 33406] gi|110279555|gb|ABG57741.1| ribonucleoside-diphosphate reductase 1, beta subunit [Cytophaga hutchinsonii ATCC 33406] Length = 324 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 89/336 (26%), Positives = 157/336 (46%), Gaps = 29/336 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +++ ++ +L + L P+K+ W Y + W E+ + DL W + L D Sbjct: 1 MSLLEEPLLKENKNRFVLFPIKHDDIWAMYKQEEASFWTAEEIDLSQDLIDWAN---LND 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 ER I L FFA+S+ +V N+ + + PE + + Q E +HS T+ +I Sbjct: 58 GERHFISHVLAFFAASDGIVNENLAVNFLEKVQIPEAKCFYGFQIMMENIHSETYSLLID 117 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + D E FN VP + KA+WAL++ D + + + Sbjct: 118 TYIKDPKEKDRLFNAIDTVPCVKKKADWALRFI---------------DNGSFIENIIAF 162 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F F + L + M G++ + I RDE LH +F + + + Sbjct: 163 AAVEGIFFSGSFCSVFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYTKY------IN 216 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 K ++ ++ EA +E + +++P +G+NA +QY++F+A+R +G+ F Sbjct: 217 NKLPAERVIQIILEAVEIEKEFVTDSLPVDLIGMNARLMQQYIEFVADRLLVALGVPKQF 276 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 T NPF +M E+I L+ + NFFE RV+EYQ+ + Sbjct: 277 NAT-NPFDFM-EMISLQGKTNFFEKRVSEYQKSGVM 310 >gi|164659270|ref|XP_001730759.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966] gi|159104657|gb|EDP43545.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966] Length = 397 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 153/345 (44%), Gaps = 27/345 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 GE + +++ +L L P++Y W+ Y A + W E+ + DL W Sbjct: 60 FVGEVDLPEEEEPILKENKGRFVLFPIRYHEIWQMYKKAEASFWTAEEIDLSKDLYDW-- 117 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N +TD ER + L FFA+S+ +V N+V + E R + Q E +HS T Sbjct: 118 DNRMTDPERHFVSHVLAFFAASDGIVNENLVERFSAEVQATEARCFYGFQIMMENIHSET 177 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + + FN VP + KA+WAL++ + Sbjct: 178 YSLLIDTYIREPERRDFLFNAIETVPVVKQKADWALRWI-------------SDHRASFS 224 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G++ + I RDE LH +F + + +K Sbjct: 225 ERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLFSHLKK 284 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 + ++ EA +E + + +P +G+NA QY++F+A+R + Sbjct: 285 -------RAHPDTVNRIITEAVDIEQDFLTDALPVSLIGMNARLMCQYIEFVADRLLVAL 337 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 G + T NPF +M E I L+ + NFFE RV +Y + + D Sbjct: 338 GNPKHYNST-NPFDFM-ENISLQGKSNFFERRVGDYAKAGVARAD 380 >gi|42544136|ref|NP_056528.2| ribonucleoside-diphosphate reductase subunit M2 B isoform 1 [Homo sapiens] gi|114621161|ref|XP_001153916.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B isoform 2 [Pan troglodytes] gi|74727333|sp|Q7LG56|RIR2B_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B; AltName: Full=TP53-inducible ribonucleotide reductase M2 B; AltName: Full=p53-inducible ribonucleotide reductase small subunit 2-like protein; Short=p53R2 gi|261278726|pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2 gi|261278727|pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2 gi|7229086|dbj|BAA92434.1| ribonucleotide reductase [Homo sapiens] gi|7229115|dbj|BAA92493.1| ribonucleotide reductase [Homo sapiens] gi|45259569|dbj|BAD12267.1| p53-inducible ribonucleotide reductase small subunit 2 [Homo sapiens] gi|52545612|emb|CAB70703.2| hypothetical protein [Homo sapiens] gi|63055293|gb|AAY29059.1| ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|80473666|gb|AAI08262.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|109659128|gb|AAI17497.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|119612247|gb|EAW91841.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_b [Homo sapiens] gi|120660296|gb|AAI30629.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens] gi|190689549|gb|ACE86549.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic construct] gi|190690911|gb|ACE87230.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic construct] gi|261859014|dbj|BAI46029.1| ribonucleotide reductase M2 B [synthetic construct] gi|313882916|gb|ADR82944.1| ribonucleotide reductase M2 B (TP53 inducible) [synthetic construct] Length = 351 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 161/342 (47%), Gaps = 28/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E + +++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 184 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 185 ERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K +++ R ++ +A +E + E +P G +G+N +QY++F+A+R ++ Sbjct: 242 ----LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVEL 297 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 298 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337 >gi|168015485|ref|XP_001760281.1| predicted protein [Physcomitrella patens subsp. patens] gi|162688661|gb|EDQ75037.1| predicted protein [Physcomitrella patens subsp. patens] Length = 330 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 91/334 (27%), Positives = 151/334 (45%), Gaps = 29/334 (8%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++ +L + + P+KY WE Y A + W EV + D W+ LTD+ER Sbjct: 5 QEEPILMENPNRFTMFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWE---ALTDNER 61 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FFA+S+ +V N+ + + + PE R + Q E +HS + ++ + Sbjct: 62 HFISHVLAFFAASDGIVLENLAIRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYI 121 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D E FN +P +T KA WAL++ + S + + + Sbjct: 122 KDHAEKNRLFNAIETIPCVTKKAEWALKWIHSAGS--------------FAERILAFACV 167 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++F F I L + M G+ + I RDE LH +F + L K Sbjct: 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTL-------LNNKL 220 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + + ++ EA ++E + E + VG+N +Y+ F+A+R +G + + Sbjct: 221 SEDRVYEIVCEAVVIEQEFVCEALSCDLVGMNKTLMSEYIDFVADRLLVSLGYPKKYN-S 279 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+ + NFFE RV EYQ+ + + Sbjct: 280 HNPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312 >gi|149248382|ref|XP_001528578.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces elongisporus NRRL YB-4239] gi|146448532|gb|EDK42920.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces elongisporus NRRL YB-4239] Length = 422 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 94/332 (28%), Positives = 155/332 (46%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L + P++Y W+ Y A + W E+ + D+ WK N L ++ER Sbjct: 98 DEPLLKENKRRYVMFPIRYHEIWQMYKKAEASFWTAEEIDLGKDMHDWK--NKLNENERF 155 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 156 FISRILAFFAASDGIVNENLVENFSAEVQIPEAKSFYGFQIMMENIHSETYSLLIDTYIK 215 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA+WA+++ D + V + E Sbjct: 216 DPKEADFLFNAIDNIPQIKKKADWAIRWIND-------------DNALFAERLVAFAAVE 262 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + + HL + Sbjct: 263 GVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLENRPD 315 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + ++ EA +E + + +P +G+N QY++F+A+R +G E ++K T Sbjct: 316 PKIVEKIISEAVEIEKEFFTDALPVSLLGMNCKLMCQYVEFVADRLLVALGNEKIYKVT- 374 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 375 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 405 >gi|75076588|sp|Q4R741|RIR2B_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B gi|67969468|dbj|BAE01083.1| unnamed protein product [Macaca fascicularis] Length = 351 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 161/342 (47%), Gaps = 28/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + + +++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTNDNEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 184 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K +++ R ++ +A +E + E +P G +G+N +QY++F+A+R ++ Sbjct: 242 ----LVNKPSEERVREIIVDAVQIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVEL 297 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 298 GFSKIFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337 >gi|15791173|ref|NP_280997.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium sp. NRC-1] gi|169236929|ref|YP_001690129.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium salinarum R1] gi|10581791|gb|AAG20477.1| ribonucleoside reductase small chain [Halobacterium sp. NRC-1] gi|167727995|emb|CAP14783.1| ribonucleoside-diphosphate reductase beta subunit [Halobacterium salinarum R1] Length = 331 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 159/327 (48%), Positives = 228/327 (69%), Gaps = 2/327 (0%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +A D N++LP+ Y WA E Y N+W P EV MQ D++ W+ N LTD ER +++ N Sbjct: 7 DAEHDPNKILPIDYDWAREYYQQGVANNWTPEEVAMQGDISQWQ-GNELTDAERQLVEWN 65 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 LGFF+++ESL ANNIVLAIY +++ PECRQYLLRQA+EEAVH+ TF Y SLG D + Sbjct: 66 LGFFSTAESLTANNIVLAIYEYVTAPECRQYLLRQAYEEAVHTDTFIYCCDSLGFDPEHM 125 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 + MY +PSI K + + T+ + +FT T D ++FL+DL FYV+ EG++FY GF Sbjct: 126 YGMYDRIPSIAEKDEFVVGLTRAVDDQAFTIDTDDDLRDFLRDLVGFYVIMEGIFFYAGF 185 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A +L+L R KMVG+ EQ++YIMRDESLHLNFG+D+INQI+ E+P +WT +F+ + +++ Sbjct: 186 AMMLALKRRGKMVGVGEQFEYIMRDESLHLNFGVDLINQIRDEHPDVWTADFEAEVNSLM 245 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 +A LE YA + P +G+++ Y++++A+RR Q+ ++P++ T+NPFPWM+E Sbjct: 246 RDAVDLEQLYARDACPDDLLGMSSEQFADYVEYVADRRFQQLRMDPVYG-TDNPFPWMTE 304 Query: 326 VIDLKKEKNFFETRVTEYQQGAELKWD 352 +DL E NFFE V+EYQQG L WD Sbjct: 305 QVDLNTETNFFERNVSEYQQGGSLDWD 331 >gi|256421019|ref|YP_003121672.1| ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM 2588] gi|256035927|gb|ACU59471.1| Ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM 2588] Length = 323 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 93/337 (27%), Positives = 159/337 (47%), Gaps = 30/337 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +N++++ +L D LLP+ Y WEKY + W E+ + D+ W N L D Sbjct: 1 MNLENELLLKENKDRFVLLPINYPKVWEKYKQHEASFWTAEEIDLSADMKDW---NNLND 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 ER I L FFA+S+ +V N+ + + PE R + Q E +HS T+ +I Sbjct: 58 GERHFITHVLAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLID 117 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + D E F+ VP++T KA WAL++ + + + V + Sbjct: 118 TYVKDPVEKDRLFHAIETVPAVTKKAKWALRWIENGN---------------FAERLVAF 162 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F F I L + M G+ + I RDE LH F + ++ P Sbjct: 163 AAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLYGMLENRLPE-- 220 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++ T++ +A +E + + +P +G+N+ +Y++F+A+R ++G +F Sbjct: 221 -----EQVHTIIRDAVAIEKEFITDALPVALIGMNSKLMSEYIEFVADRWLSELGYTKIF 275 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 T NPF +M E+I L+ + NFFE RV +YQ+ + Sbjct: 276 N-TANPFDFM-EMISLQGKTNFFEKRVGDYQKAGVMS 310 >gi|294890631|ref|XP_002773236.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] gi|239878288|gb|EER05052.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] Length = 350 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 91/332 (27%), Positives = 151/332 (45%), Gaps = 28/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +L + P+KY WE Y + W E+ + DL W++ L+D++R Sbjct: 14 KEDLLKENPHRYVMFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWEN---LSDNDRH 70 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + Sbjct: 71 FISHVLAFFAASDGIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIK 130 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F VPS+ KA WAL + D + + + E Sbjct: 131 DPAEKDKIFRAIETVPSVRKKAEWALSWIN--------------DDNCFSERLIAFACVE 176 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G+ F F I L + M G+ + I RDE LH +F + N + +T+ Sbjct: 177 GILFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHADFACLLYNMMH------YTRLP 230 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ ++ A +E + E++P +G+N+ +Y++F+A+R +G L+ T Sbjct: 231 DERVHEIVRGAVDVERVFISESLPVSLIGMNSQLMCRYIEFVADRLLVALGHPKLYNAT- 289 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF WM ++I L+ + NFFE RV EYQ+G + Sbjct: 290 NPFDWM-KMISLQGKTNFFEKRVGEYQKGGVM 320 >gi|320580024|gb|EFW94247.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR) complex [Pichia angusta DL-1] Length = 408 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 94/332 (28%), Positives = 150/332 (45%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L L P+KY W+ Y A + W E+ + DL W N L D+ER Sbjct: 81 DEPLLVENKRRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDNERY 138 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 139 FVSRVLAFFAASDGIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYVK 198 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WA+++ ++ + V + E Sbjct: 199 DPKEAEFLFNAIETIPCIKEKAEWAMRWIND-------------EEALFAERLVAFAAVE 245 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + + HL Sbjct: 246 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFS-------HLNNTPN 298 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ EA +E Y + +P +G+N QY++F+A+R +G + + T Sbjct: 299 NDIVLKIITEAVDIEKRYFTDALPVNLLGMNCSLMCQYVEFVADRLLLSLGCKKHYNAT- 357 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 358 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 388 >gi|327269406|ref|XP_003219485.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like [Anolis carolinensis] Length = 414 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 95/339 (28%), Positives = 158/339 (46%), Gaps = 28/339 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E + +++ +L + P+ Y W+ Y A + W EV + D W N Sbjct: 87 ENGLKSNEEPLLRKNPRRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKDFPHW---NK 143 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS + Sbjct: 144 LKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 203 Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D E FN +P + KA+WAL++ + + + Sbjct: 204 LIDTYIKDPEERDFLFNAIETMPCVKKKADWALRWIRD-------------RKATFGERV 250 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 251 VAFASVEGIFFSGAFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY------ 304 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 L K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G Sbjct: 305 -LVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLLELGFS 363 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 364 KVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 400 >gi|213511642|ref|NP_001133495.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar] gi|209154228|gb|ACI33346.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar] Length = 387 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 90/333 (27%), Positives = 148/333 (44%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + P+KY W+ Y A + W EV + D W + L D+ER Sbjct: 67 EEPLLKENPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDLSKDTQHW---DSLKDEERY 123 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 124 FISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIK 183 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P + KA+WAL + + V + E Sbjct: 184 DPKERDYLFNAIETLPCVKRKADWALNWIGN-------------KNAGFGERVVAFAAVE 230 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 231 GIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVHKPS 283 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ ++ A +E + + +P +G+N QY++F+A+R ++G + ++ E Sbjct: 284 KETVTKLIRNAVEIEQEFLTKALPVKLIGMNCDLMTQYIEFVADRLMLELGFDKIY-RVE 342 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 343 NPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 374 >gi|197101489|ref|NP_001125944.1| ribonucleoside-diphosphate reductase subunit M2 B [Pongo abelii] gi|75041724|sp|Q5R9G0|RIR2B_PONAB RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B gi|55729743|emb|CAH91600.1| hypothetical protein [Pongo abelii] Length = 351 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 161/342 (47%), Gaps = 28/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E + +++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 184 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 185 ERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K +++ R ++ +A +E + E +P G +G+N +QY++F+A+R ++ Sbjct: 242 ----LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVEL 297 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 298 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337 >gi|313117005|ref|YP_004038129.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense DSM 11551] gi|312294957|gb|ADQ68993.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense DSM 11551] Length = 330 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 160/326 (49%), Positives = 224/326 (68%), Gaps = 2/326 (0%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 + D N++LP+ Y WA + Y N+W+P E+PMQ+D+A W + + L+D E+ +++ N Sbjct: 7 DTEHDPNKILPIDYDWARQYYRDGVANNWVPEEIPMQEDIAQW-NGDALSDSEKQLVEWN 65 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 LGFF+++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG D + Sbjct: 66 LGFFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPEYM 125 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 + MY VPSI K + + T+ L P FT ++ L+DL FYVV EG++FY GF Sbjct: 126 YGMYDRVPSIKEKDEFVVDLTRNLDDPDFTVEDTADVRDLLRDLVGFYVVMEGVFFYAGF 185 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A +L+L R NKMVGI +Q++YIMRDESLH+ FG+D+INQI+ ENP WT EF + R ++ Sbjct: 186 AMMLALKRQNKMVGIGQQFEYIMRDESLHVGFGVDLINQIRAENPDAWTDEFGAEVRDLI 245 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 +A LE YA E P +G++ +Y++ +A+RR Q+ L+ + T+NPFPWMSE Sbjct: 246 EKAVDLEQIYAREACPDDVLGMSPDQFAEYVEHVADRRLGQLDLDASYG-TDNPFPWMSE 304 Query: 326 VIDLKKEKNFFETRVTEYQQGAELKW 351 +DL KEKNFFET+VTEYQ G L W Sbjct: 305 AVDLNKEKNFFETQVTEYQSGGSLDW 330 >gi|73544537|ref|XP_848163.1| ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] gi|321438516|emb|CBZ12275.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] Length = 388 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 158/353 (44%), Gaps = 28/353 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A + P + N +++ + L P++Y W KY + W E+ Sbjct: 47 VAAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 106 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W + L D ER IK L FFA S+ +V N+ + PE R + Q Sbjct: 107 LGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQ 163 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS T+ ++ + D E + + +P I KA WA+++ Sbjct: 164 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWI----------- 212 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 Q+ + + EG++F F + L + M G+ + I RDE LH +F Sbjct: 213 ---GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDF 269 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + N H+ K +++ ++ +A +E + + +P +G+NA QY++ Sbjct: 270 ACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIE 323 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 F+A+R +G E ++ T+ PF +M E+I L+ + NFFE RV EYQ+ + Sbjct: 324 FVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMS 374 >gi|195401438|ref|XP_002059320.1| GJ18335 [Drosophila virilis] gi|194142326|gb|EDW58732.1| GJ18335 [Drosophila virilis] Length = 394 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 88/344 (25%), Positives = 157/344 (45%), Gaps = 28/344 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 63 MEKIAAQFDPTVEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWA 122 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 LTD+ER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 123 ---RLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 179 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I + D + FN +P++ KA+WAL + + Sbjct: 180 MYSVLIDTYIRDPHQRDYLFNAIETMPAVKRKADWALSWI-------------SSKAANF 226 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 227 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ--- 283 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 HL + +++ ++ +A +E + + +P +G+N +Y++F+A+R + Sbjct: 284 ----HLVQRPCRERIIEIISDAVTIEQEFLTDALPVNLIGMNCALMSEYIEFVADRLLVE 339 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +G+ L+ T+NPF +M E+I L + NFFE +V EYQ+ Sbjct: 340 LGVGKLYN-TKNPFTFM-EMISLDGKTNFFEKKVGEYQRMGVTS 381 >gi|157126966|ref|XP_001654749.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti] gi|15638625|gb|AAL05057.1|AF411297_1 ribonucleotide reductase 2 [Aedes aegypti] gi|82469974|gb|ABB77235.1| ribonucleotide reductase small subunit R2 [Aedes aegypti] gi|108873070|gb|EAT37295.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti] Length = 397 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 93/352 (26%), Positives = 160/352 (45%), Gaps = 28/352 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A N + + + + + +L + P++Y W+ Y A + W EV Sbjct: 57 LAKNELSAAQKREQTPFDPSIEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVD 116 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DLA W+ L E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 117 LSKDLADWE---KLKSGEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQ 173 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E VHS + +I + D E FN +P + KA+WAL + Sbjct: 174 IAMENVHSEMYSLLIDTYIRDSKEREYLFNAIDNLPCVKKKADWALNWI----------- 222 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 + + + V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 223 --SSKKANFGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 280 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + L K Q++ ++ EA L+E + + +P +G+N QY++ Sbjct: 281 ACLMFKY-------LVQKPSQERVIEIIREAVLIEQEFLTKALPVDLLGMNCDLMSQYIE 333 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 F+A+R ++G++ ++ T+NPF +M E I L+ + NFFE +V EYQ+ + Sbjct: 334 FVADRLLLELGIDKIYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 383 >gi|154337607|ref|XP_001565036.1| ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062075|emb|CAM45178.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] Length = 392 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 89/361 (24%), Positives = 158/361 (43%), Gaps = 37/361 (10%) Query: 2 ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52 A + + PI + + N +++ + L P++Y W KY + Sbjct: 43 AEDLVIKPIATDAEVLLADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 102 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ + +D+ W L D ER IK L FFA S+ +V N+ + PE Sbjct: 103 IWTVEEIDLGNDMKDW---VALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPE 159 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTL 169 R + Q E +HS T+ ++ + D E + + +P I KA WA+++ Sbjct: 160 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWI--- 216 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 Q+ + + EG++F F + L + M G+ + I R Sbjct: 217 -----------GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISR 265 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE LH +F + N H+ K +++ ++ +A +E + + +P +G+NA Sbjct: 266 DEGLHTDFACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNA 319 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 QY++F+A+R +G E + T+ PF +M E+I L+ + NFFE +V EYQ+ + Sbjct: 320 ELMAQYIEFVADRLLVSLGEEKHYNATQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVM 377 Query: 350 K 350 Sbjct: 378 S 378 >gi|194474072|ref|NP_001124015.1| ribonucleoside-diphosphate reductase subunit M2 B [Rattus norvegicus] gi|149066498|gb|EDM16371.1| ribonucleotide reductase M2 B (TP53 inducible) (predicted) [Rattus norvegicus] Length = 351 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 161/342 (47%), Gaps = 28/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + E V +++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 ETKENEVRSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 184 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K +++ ++ +A +E + E +P G +G+N +QY++F+A+R ++ Sbjct: 242 ----LVNKPSEERVMEIIVDAVKIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLGEL 297 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 298 GFSKIFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337 >gi|195436539|ref|XP_002066225.1| GK22247 [Drosophila willistoni] gi|194162310|gb|EDW77211.1| GK22247 [Drosophila willistoni] Length = 395 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 155/343 (45%), Gaps = 28/343 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 64 MDKKVAHFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWA 123 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 LTD+ER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 124 ---RLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 180 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I + D E FN +P++ KA+WAL + + Sbjct: 181 MYSILIDTYIRDPQERDYLFNAVETMPAVKRKADWALSWI-------------SSKAANF 227 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 228 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNEMISRDEGLHCDFAVLMFQ--- 284 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 HL + +++ ++ +A +E + +P +G+N QY++F+A+R + Sbjct: 285 ----HLVQRPSRERIIEIIRDAVQIEQEFLTVALPVNLIGMNCDLMSQYIEFVADRLLVE 340 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G+ ++ T+NPF +M E+I L + NFFE +V EYQ+ + Sbjct: 341 LGVGKIYN-TKNPFSFM-EMISLDGKTNFFEKKVGEYQRMGVV 381 >gi|126322530|ref|XP_001380256.1| PREDICTED: hypothetical protein [Monodelphis domestica] Length = 361 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 93/339 (27%), Positives = 162/339 (47%), Gaps = 28/339 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + + ++ +L S + P++Y W+ Y A + W EV + DL W N Sbjct: 34 DNGLKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 90 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L DE+ I L FFA+S+ +V N+V + + PE R + Q E +HS + Sbjct: 91 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENIHSEMYSL 150 Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D + FN +P + KA+WALQ+ + + Sbjct: 151 LIDTYIKDPQKREFLFNAIETMPCVKRKADWALQWIAD-------------RKSTFGERV 197 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 V + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 198 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFHY------ 251 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 L K +++ + ++ A +E + + +P G +G+N+ +QY++F+A+R ++G Sbjct: 252 -LVNKPSEERVKEIIINAVEIEQEFLTDALPVGLIGINSTLMKQYIEFVADRLLVELGFS 310 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +F+ ++NPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 311 KVFQ-SDNPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 347 >gi|146090970|ref|XP_001466408.1| ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] gi|134070770|emb|CAM69127.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania infantum JPCM5] Length = 388 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 90/361 (24%), Positives = 161/361 (44%), Gaps = 37/361 (10%) Query: 2 ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52 N + P+ AG + + N +++ + L P++Y W KY + Sbjct: 39 TENLVMKPVAAGAEVLTADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 98 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE Sbjct: 99 IWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPE 155 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTL 169 R + Q E +HS T+ ++ + D E + + +P I KA WA+++ Sbjct: 156 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWI--- 212 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 Q+ + + EG++F F + L + M G+ + I R Sbjct: 213 -----------GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISR 261 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE LH +F + N H+ K +++ ++ +A +E + + +P +G+NA Sbjct: 262 DEGLHTDFACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNA 315 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 QY++F+A+R +G E ++ T+ PF +M E+I L+ + NFFE +V EYQ+ + Sbjct: 316 ELMAQYIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVM 373 Query: 350 K 350 Sbjct: 374 S 374 >gi|73974198|ref|XP_539109.2| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible) isoform 2 [Canis familiaris] Length = 351 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 99/342 (28%), Positives = 160/342 (46%), Gaps = 28/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E V D++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTNENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWI-------------EDRKSTFG 184 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++ Sbjct: 242 ----LVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVEL 297 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G +F+ ENPF +M E I L+ + NFFE RV EYQ+ A + Sbjct: 298 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 337 >gi|241951066|ref|XP_002418255.1| ribonucleoside-diphosphate reductase small chain 1, putative; ribonucleotide reductase r2 subunit 1, putative; ribonucleotide reductase small subunit 1, putative [Candida dubliniensis CD36] gi|223641594|emb|CAX43555.1| ribonucleoside-diphosphate reductase small chain 1, putative [Candida dubliniensis CD36] Length = 413 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 91/332 (27%), Positives = 153/332 (46%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + P++Y W Y A + W E+ + DL W N L ++ER Sbjct: 89 EEPLLVENKRRYVMFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWN--NKLNENERY 146 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + R L FFA+S+ +V N++ + PE + + Q E +HS T+ +I + Sbjct: 147 FVSRVLAFFAASDGIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIK 206 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA+WA+++ Q D+ + V + E Sbjct: 207 DPQEADYLFNAIANIPCIQKKADWAIKWIQD-------------DEALYGERLVAFAAVE 253 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 254 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLQNRPS 306 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + ++ EA +E Y + +P +G+N QY++F+A+R +G + ++ T Sbjct: 307 PEIVEKIITEAVDVEKEYFTDALPVSLLGMNCNLMCQYIEFVADRLLLALGNKKVYNVT- 365 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 366 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 396 >gi|157869457|ref|XP_001683280.1| ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] gi|68224164|emb|CAJ04657.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania major strain Friedlin] Length = 392 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 157/353 (44%), Gaps = 28/353 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A + P + N +++ + L P++Y W KY + W E+ Sbjct: 51 VAAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 110 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W + L D ER IK L FFA S+ +V N+ + PE R + Q Sbjct: 111 LGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQ 167 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS T+ ++ + D E + + +P I KA WA+++ Sbjct: 168 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWI----------- 216 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 Q+ + + EG++F F + L + M G+ + I RDE LH +F Sbjct: 217 ---GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDF 273 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + N H+ K +++ ++ +A +E + + +P +G+NA QY++ Sbjct: 274 ACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIE 327 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 F+A+R +G E + T+ PF +M E+I L+ + NFFE +V EYQ+ + Sbjct: 328 FVADRLLVSLGEEKHYHSTQ-PFEFM-EMISLQGKTNFFERKVGEYQKAGVMS 378 >gi|50311465|ref|XP_455757.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644893|emb|CAG98465.1| KLLA0F15103p [Kluyveromyces lactis] Length = 401 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 99/332 (29%), Positives = 152/332 (45%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L L P+KY WE Y A + W E+ + DL W N + ++ER Sbjct: 75 DEPLLVENKRRFVLFPIKYHEIWEAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRILAFFAASDGIVNENLVENFSAEVQAPEAKCFYGFQIMMENIHSETYSLLIDTYIK 192 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WA+++ Q D + V + E Sbjct: 193 DPKESEFLFNAIETIPQIKEKAEWAIRWIQD-------------DDALFGERLVAFAAVE 239 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 240 GVFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPN 292 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + ++ EA +E Y + +P +G+NA QY++F+A+R +G + F T Sbjct: 293 PEIVEKIITEAVEIEKRYFMDALPVSLLGMNADLMNQYVEFVADRLLVALGNKKYFNVT- 351 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVI 382 >gi|257053403|ref|YP_003131236.1| ribonucleotide-diphosphate reductase subunit beta [Halorhabdus utahensis DSM 12940] gi|256692166|gb|ACV12503.1| Ribonucleoside-diphosphate reductase [Halorhabdus utahensis DSM 12940] Length = 330 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 164/325 (50%), Positives = 227/325 (69%), Gaps = 2/325 (0%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 A D N++LP+ Y WA E Y + NN+W+P E+PMQDD+A W + + LTD ER +++ NL Sbjct: 8 AEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVAQW-NGDELTDAERQLVEWNL 66 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146 GFF+++ESL ANN+VLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG + L+ Sbjct: 67 GFFSTAESLTANNLVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPEYLY 126 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 MY VPSI K + + T+++ P FT ++ L+DL FYV+ EG++FY GFA Sbjct: 127 GMYDRVPSIEEKDQFVVDLTRSIDDPEFTIDGDSDVRDLLRDLVGFYVIMEGIFFYAGFA 186 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 +L L R NKMVGI +Q++YIMRDESLH+ FG+D+I+QI+ ENP +WT EF + ++ Sbjct: 187 MMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRTENPGVWTDEFDSEVIDLIK 246 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 EA LE YA E P+ +G++ Y+++IA+RR Q+ L + TENPFPWMSE Sbjct: 247 EAVELEQIYAREACPEEILGMSGSQFADYVEYIADRRLDQLDLPEQYG-TENPFPWMSEQ 305 Query: 327 IDLKKEKNFFETRVTEYQQGAELKW 351 +DL KEKNFFET+VTEYQ G L+W Sbjct: 306 VDLNKEKNFFETQVTEYQSGGSLEW 330 >gi|312889900|ref|ZP_07749444.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM 18603] gi|311297432|gb|EFQ74557.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM 18603] Length = 343 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 94/340 (27%), Positives = 157/340 (46%), Gaps = 30/340 (8%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R++ +++ +L D +LP+ Y WE Y + W E+ + DD+ W N L Sbjct: 19 RMSQENELLLRENKDRFVILPINYPQIWEMYKKHEASFWTAEEIDLSDDMKDW---NNLN 75 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 D ER I L FFA+S+ +V N+ + + PE R + Q E +HS T+ +I Sbjct: 76 DGERHFISHILAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLI 135 Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 + D E F+ VP + K WAL++ + + V Sbjct: 136 DTYIKDTTEKNRLFHAIETVPCVKKKGEWALKWIEN---------------GTFAERLVA 180 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++F F I L + M G+ + I RDE +H F + + L Sbjct: 181 FAAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCEFACLLYSM-------L 233 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 K ++ T++ +A +E + + +P +G+NA QY++F+A+R ++G + L Sbjct: 234 SNKLSKEAVTTIIADAVEIEKEFVTDALPVNLIGMNAKLMSQYIEFVADRWLQELGYDKL 293 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 + T NPF +M E+I L+ + NFFE RV +YQ+ L D Sbjct: 294 YHAT-NPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLNND 331 >gi|149721713|ref|XP_001493623.1| PREDICTED: ribonucleotide reductase M2 B (TP53 inducible) [Equus caballus] Length = 351 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 159/342 (46%), Gaps = 28/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E +++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTNENEAKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N LT DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLTSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WALQ+ + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALQWIAD-------------RKSTFG 184 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++ Sbjct: 242 ----LVNKPSEERVREIIVNAVEIEQEFLTEALPVDLIGMNCVLMKQYIEFVADRLLVEL 297 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 298 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337 >gi|68481406|ref|XP_715342.1| hypothetical protein CaO19.5801 [Candida albicans SC5314] gi|68481537|ref|XP_715277.1| hypothetical protein CaO19.13223 [Candida albicans SC5314] gi|46436893|gb|EAK96248.1| hypothetical protein CaO19.13223 [Candida albicans SC5314] gi|46436961|gb|EAK96315.1| hypothetical protein CaO19.5801 [Candida albicans SC5314] gi|238882096|gb|EEQ45734.1| ribonucleoside-diphosphate reductase small chain 1 [Candida albicans WO-1] Length = 413 Score = 323 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 92/332 (27%), Positives = 153/332 (46%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + P++Y W Y A + W E+ + DL W N L ++ER Sbjct: 89 EEPLLVENKRRYVMFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWN--NKLNENERY 146 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N++ + PE + + Q E +HS T+ +I + Sbjct: 147 FISRVLAFFAASDGIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIK 206 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA+WA+++ Q D+ + V + E Sbjct: 207 DPQEADYLFNAIANIPCIQKKADWAIKWIQD-------------DEALYGERLVAFAAVE 253 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 254 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLQNRPS 306 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + ++ EA +E Y + +P +G+N QY++F+A+R +G + ++ T Sbjct: 307 PEIVERIITEAVDVEKEYFTDALPVSLLGMNCNLMCQYIEFVADRLLLALGNKKVYNVT- 365 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 366 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 396 >gi|91081999|ref|XP_969259.1| PREDICTED: similar to AGAP006818-PA [Tribolium castaneum] gi|270007377|gb|EFA03825.1| hypothetical protein TcasGA2_TC013940 [Tribolium castaneum] Length = 374 Score = 323 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 91/334 (27%), Positives = 158/334 (47%), Gaps = 27/334 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + + + +L + P++Y W+KY A + W EV + DL WK N L D Sbjct: 51 DPELEPLLQENPRRFVVFPIQYPDIWDKYKQAEASFWTTEEVDLSKDLDDWK--NKLNSD 108 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 109 ERYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAIENIHSEMYSMLIET 168 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + E FN +P + KA+WAL + + + V + Sbjct: 169 YISEPQEKEFLFNAIETLPCVKKKADWALLWINS-------------KNATFGERIVAFA 215 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + N M G+ + I RDE LH +F + + HL Sbjct: 216 AVEGIFFSGSFASIFWLKKRNLMPGLTFSNELISRDEGLHCDFACLMFS-------HLVQ 268 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K +++ ++++ +A +E + E +P +G+N QY++F+A+R ++G E ++ Sbjct: 269 KPSKERIQSIIQDAVKIEKEFLTEALPVSMIGMNCALMCQYIEFVADRLLGELGCEKIYN 328 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 ++NPF +M+ +I + + NFFE +V EYQ+ Sbjct: 329 -SQNPFDFMT-IISNEGKTNFFEKKVGEYQKSGV 360 >gi|20178418|ref|NP_619839.1| CPXV051 protein [Cowpox virus] gi|20153036|gb|AAM13497.1|AF482758_48 CPXV051 protein [Cowpox virus] Length = 333 Score = 323 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 29/337 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VN+ + +L + + P++Y W Y A + W EV + D+ W N LT Sbjct: 11 VNLVMEPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I Sbjct: 68 NEKHFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLID 127 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + D E FN +P + KA+WA ++ D + V + Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSASYGERLVAF 173 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLL 226 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ Sbjct: 227 HPPSEETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIY 286 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 T NPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 287 NVT-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321 >gi|3220181|gb|AAC23560.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis] Length = 354 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 156/353 (44%), Gaps = 28/353 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A + P + N +++ + L P++Y W KY + W E+ Sbjct: 13 VAAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 72 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W L D ER IK L FFA S+ +V N+ + PE R + Q Sbjct: 73 LGNDMKDWA---ALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQ 129 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS T+ ++ + D E + + +P I KA WA+++ Sbjct: 130 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWI----------- 178 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 Q+ + + EG++F F + L + M G+ + I RDE LH +F Sbjct: 179 ---GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDF 235 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + N H+ K +++ ++ +A +E + + +P +G+NA QY++ Sbjct: 236 ACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIE 289 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 F+A+R +G E + T+ PF +M E+I L+ + NFFE +V EYQ+ + Sbjct: 290 FVADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 340 >gi|156386903|ref|XP_001634150.1| predicted protein [Nematostella vectensis] gi|156221230|gb|EDO42087.1| predicted protein [Nematostella vectensis] Length = 384 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 159/353 (45%), Gaps = 28/353 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M ++ + R N +D+ +L +LP++Y W+ Y A + W EV Sbjct: 44 MVSDRTPPKKSRAKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVD 103 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D + L DDER+ + L FFA+S+ +V N+V + + PE R + Q Sbjct: 104 LSKDSHDFA---KLNDDERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQ 160 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS + +I SL D+ E FN +P + KA+WAL + Sbjct: 161 IAIENIHSEMYSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWIN---------- 210 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 + + + + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 211 ---PQRASFGERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 267 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + L K ++ R ++ +A ++E + +P +G+N QY++ Sbjct: 268 ACLMYKY-------LVNKPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIE 320 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 F+A+R + + ++ ENPF +M E I L+ + NF+E RV EYQ+ + Sbjct: 321 FVADRLLVALNCQKVYNV-ENPFDFM-ENISLEGKTNFYEKRVGEYQKSGVMS 371 >gi|226528734|ref|NP_001150842.1| ribonucleoside-diphosphate reductase small chain [Zea mays] gi|195642302|gb|ACG40619.1| ribonucleoside-diphosphate reductase small chain [Zea mays] Length = 339 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 88/333 (26%), Positives = 150/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L SD + P+++ WE Y A + W EV + D W L+ DER Sbjct: 14 EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVGLSADARHWDE--ALSPDERH 71 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMTDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F VP++ KA+WA+++ E + V + E Sbjct: 132 DHVEKDRLFRAIDTVPAVRRKADWAMRWIDG--------------GERFAERIVAFACVE 177 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + ++ K Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYELLR-------NKLD 230 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + R ++ +A +E + + +P VG+N QY++F+A+R +G + ++ T Sbjct: 231 EARVREIVADAVDIEREFVCDALPVALVGMNGDLMSQYIEFVADRLLMALGCKKMYNVT- 289 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L + NFFE RV +YQ+ + + Sbjct: 290 NPFDWM-ELISLMGKTNFFEKRVGDYQKASVMN 321 >gi|294950175|ref|XP_002786498.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] gi|239900790|gb|EER18294.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus ATCC 50983] Length = 350 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 91/331 (27%), Positives = 153/331 (46%), Gaps = 28/331 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P+KY WE Y + W E+ + DL W++ L+D++R Sbjct: 15 EDLLKENPHRYVMFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWEN---LSDNDRHF 71 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + D Sbjct: 72 ISHVLAFFAASDGIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIKD 131 Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 ++F VPS+ KA WAL + D + + + EG Sbjct: 132 PEQKDKIFRAIETVPSVRKKAEWALSWIN--------------DDNCFAERLIAFACVEG 177 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + F F I L + M G+ + I RDE LH +F + N +K +T+ Sbjct: 178 ILFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHADFACLLYNMLK------YTRLPD 231 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ ++ A +E + E++P +G+N+ +Y++F+A+R +G L+ T N Sbjct: 232 ERVHEIVRGAVEVERVFISESLPVSLIGMNSQLMCRYIEFVADRLLVALGHPKLYNAT-N 290 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 PF WM ++I L+ + NFFE RV EYQ+G + Sbjct: 291 PFDWM-KMISLQGKTNFFEKRVGEYQKGGVM 320 >gi|4894211|gb|AAD32302.1| ribonucleotide reductase small subunit [Glycine max] Length = 339 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 152/342 (44%), Gaps = 29/342 (8%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 G + + + +L +S + P++Y WE Y A + W EV + D+ W++ Sbjct: 7 NGVDKARDEQEPILMEQSQRFCMFPIRYKQIWEMYKKAEASFWTAEEVDLSYDVQHWET- 65 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 L+ E+ I L FFA+S+ +V N+ + PE R + Q E +HS + Sbjct: 66 --LSVSEKHFITHVLAFFAASDGIVLENLAARFLSDVQIPEARAFYGFQIAMENIHSEMY 123 Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ + D E FN +P + KA WAL + + + Sbjct: 124 SLLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWIHS--------------STSFAE 169 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++F F I L + M G+ + I RDE LH +F + + ++ Sbjct: 170 RLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK- 228 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 + ++HEA +E + + +P +G+N+ QY++F+A+R +G Sbjct: 229 ------PLISDQVHKLVHEAVEIETEFVCDALPCALIGMNSVLMSQYIKFVADRLLVALG 282 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + + ENPF WM E I L+ + NFFE RV +YQ+ + + Sbjct: 283 YQRKYNV-ENPFDWM-EFISLQGKANFFERRVGDYQKASVMS 322 >gi|198420293|ref|XP_002130242.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit M2 (Ribonucleotide reductase small subunit) (Ribonucleotide reductase small chain) [Ciona intestinalis] Length = 393 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L + P++Y W+ Y A + W EV + D+ W+ L +ER Sbjct: 72 NEEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDMVHWE---ALKPNER 128 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 129 KFISHVLAFFAASDGIVNENLVERFAQEVQITEARFFYGFQIAIENIHSEMYSLLINTYI 188 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D E FN +P + KA WAL++ + + + + Sbjct: 189 RDTHEREFLFNAIETLPCVRKKAEWALKWI-------------SDSESTYAERIIAFASV 235 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 236 EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHKP 288 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + + ++ +A +E + + +P +G+N +QY++F+A+R ++G +FK Sbjct: 289 SEARVVEIVKDAVTIEQEFLTDALPVALIGMNNKLMKQYIEFVADRLLVELGCSKVFKV- 347 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 ENPF +M E+I L+ + NFFE RV EYQ+ + Sbjct: 348 ENPFDFM-ELISLEGKTNFFEKRVGEYQKAGVM 379 >gi|194673004|ref|XP_607398.4| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus] gi|297482473|ref|XP_002692807.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Bos taurus] gi|296480530|gb|DAA22645.1| ribonucleotide reductase M2 polypeptide-like [Bos taurus] Length = 351 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 159/342 (46%), Gaps = 28/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E D++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTNENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKKAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 184 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++ Sbjct: 242 ----LVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTEL 297 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 298 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337 >gi|195119943|ref|XP_002004488.1| GI19586 [Drosophila mojavensis] gi|193909556|gb|EDW08423.1| GI19586 [Drosophila mojavensis] Length = 393 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 89/340 (26%), Positives = 154/340 (45%), Gaps = 28/340 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 66 AAPFDPSLEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWA---R 122 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LTD+ER I L FFA+S+ +V N+V + + E R + Q E VHS + Sbjct: 123 LTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSV 182 Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 +I + D E FN +P++ KA+WAL + + + Sbjct: 183 LIDTYIRDPQERDYLFNAVETMPAVKRKADWALSWI-------------SSKAANFGERI 229 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 + + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 230 IAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVMMFR------- 282 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 HL + +++ ++ +A +E + + +P +G+N QY++F+A+R ++G+ Sbjct: 283 HLVQRPSRERIIEIISDAVTIEQEFLTDALPVNLIGMNCALMSQYIEFVADRLLVELGVG 342 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++ T+NPF +M E+I L + NFFE +V EYQ+ Sbjct: 343 KIYN-TKNPFTFM-EMISLDGKTNFFEKKVGEYQRMGVTS 380 >gi|154340038|ref|XP_001565976.1| ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] gi|134063294|emb|CAM45500.1| putative ribonucleoside-diphosphate reductase small chain [Leishmania braziliensis MHOM/BR/75/M2904] Length = 388 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 89/361 (24%), Positives = 158/361 (43%), Gaps = 37/361 (10%) Query: 2 ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52 + + PI G + + N +++ + L P++Y W KY + Sbjct: 39 TEDLVIKPIATGAEVLLADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 98 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ + +D+ W L D ER IK L FFA S+ +V N+ + PE Sbjct: 99 IWTVEEIDLGNDMKDW---VALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPE 155 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTL 169 R + Q E +HS T+ ++ + D E + + +P I KA WA+++ Sbjct: 156 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWI--- 212 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 Q+ + + EG++F F + L + M G+ + I R Sbjct: 213 -----------GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISR 261 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE LH +F + N H+ K +++ ++ +A +E + + +P +G+NA Sbjct: 262 DEGLHTDFACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNA 315 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 QY++F+A+R +G E + T+ PF +M E+I L+ + NFFE +V EYQ+ + Sbjct: 316 ELMAQYIEFVADRLLVSLGEEKHYNATQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVM 373 Query: 350 K 350 Sbjct: 374 S 374 >gi|296227440|ref|XP_002759377.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like isoform 1 [Callithrix jacchus] Length = 351 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 98/345 (28%), Positives = 161/345 (46%), Gaps = 28/345 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S E + +++ +L S + P++Y W+ Y A + W EV + DL Sbjct: 18 SSADTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPH 77 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VH Sbjct: 78 W---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVH 134 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D + FN +P + KA+WAL++ + Sbjct: 135 SEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKS 181 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 182 TFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY 241 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 L K +++ R ++ +A +E + E +P G +G+N +QY++F+A+R Sbjct: 242 -------LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLL 294 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 ++G F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 295 VELGFSKFFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337 >gi|326797773|ref|YP_004315592.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21] gi|326548537|gb|ADZ76922.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21] Length = 323 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 30/335 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 ++ +++ +L D +LP+ Y W+ Y + W E+ + DL W + L D Sbjct: 1 MSQENEVLLRENKDRFVILPINYPAIWDMYKKHEASFWTAEEIDLSGDLKDWAN---LND 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 ER I L FFA+S+ +V N+ + + PE R + Q E +HS T+ +I Sbjct: 58 GERHFISHVLAFFAASDGIVNENLAINFMSEVQLPEARSFYGFQIAMENIHSETYALLID 117 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + D E F+ V + KA WAL++ + S + V + Sbjct: 118 TYVKDPVEKDRLFHAIETVECVKKKAEWALRWIENGS---------------FAERLVAF 162 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F F I L + M G+ + I RDE LH F + + ++ + P Sbjct: 163 AAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLYSMLEAKLP--- 219 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +++ + ++ +A +E + + +P +G+NA +QY++F+A+R ++G + Sbjct: 220 ----KERVQEIIIDAVEIEKEFITDALPVKLIGMNADLMKQYIEFVADRWLVELGNSKYY 275 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 T NPF +M E+I L+ + NFFE RV +YQ+ Sbjct: 276 NAT-NPFDFM-ELISLQGKTNFFEKRVGDYQKSGV 308 >gi|296809816|ref|XP_002845246.1| ribonucleotide reductase [Arthroderma otae CBS 113480] gi|238842634|gb|EEQ32296.1| ribonucleotide reductase [Arthroderma otae CBS 113480] Length = 405 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 97/343 (28%), Positives = 156/343 (45%), Gaps = 30/343 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++A + ++ +L L P+KY E Y A + W E+ + D+ W Sbjct: 65 VKAKTPKELEAEEPLLQENPQRFVLFPIKYH---EMYKKAEASFWTAEEIDLSKDIHDWN 121 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L DDER I L FFA+S+ +V N++ + PE R + Q E +HS Sbjct: 122 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSE 179 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 T+ +I + ++ + F +P I KA+WA+++ Q D D F Sbjct: 180 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKDSTFA 227 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 Q L F V EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 228 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS--- 283 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 HL + ++ EA +E + + +P +G+NA QY++F+A+R Sbjct: 284 ----HLNYRPDPTAVEAIITEAVSIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 339 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G + + T NPF +M I L + NFFE RV +YQ+ + Sbjct: 340 LGNKKFYN-TTNPFDFMDN-ISLAGKTNFFEKRVGDYQKAGVM 380 >gi|8101697|gb|AAF72618.1|AF252539_2 ribonucleotide reductase small subunit M2 [Leishmania amazonensis] Length = 345 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 158/353 (44%), Gaps = 28/353 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A + P + N +++ + L P++Y W KY + W E+ Sbjct: 4 VAAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 63 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W + L D ER IK L FFA S+ +V N+ + PE R + Q Sbjct: 64 LGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQ 120 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS T+ ++ + D E + + +P I KA WA+++ Sbjct: 121 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWI----------- 169 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 Q+ + + EG++F F + L + M G+ + I RDE LH +F Sbjct: 170 ---GSSASFQERLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDF 226 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + N H+ K +++ ++ +A +E + + +P +G+NA QY++ Sbjct: 227 ACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIE 280 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 F+A+R +G E ++ T+ PF +M E+I L+ + NFFE RV EYQ+ + Sbjct: 281 FVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMS 331 >gi|79160106|gb|AAI08038.1| Rrm2b protein [Danio rerio] Length = 349 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 162/352 (46%), Gaps = 31/352 (8%) Query: 5 TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T ++ Q G K V+ V+D+ +L + P++Y W+ Y A + W EV + Sbjct: 10 TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W +GL +E+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 70 SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E VHS + +I + D E FN + +P + KA+WALQ+ Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWI------------ 174 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + V + EG++F FA I L R M G+ + I RDE LH NF Sbjct: 175 -SDTNSTFGERLVAFAAVEGIFFSGSFAAIYWLKRRGLMPGLTYSNELISRDEGLHCNFA 233 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + + K + ++ +A +E + E +P +G+N +QY++F Sbjct: 234 CLMYSYLVK-------KPSVDRVNDIIAKAVSIEQEFLTEALPVNLIGMNCSLMKQYIEF 286 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +A+R +GL + +ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 287 VADRLLTDLGLPKAY-CSENPFDFM-ESISLEGKTNFFEKRVAEYQRLGVMS 336 >gi|194883840|ref|XP_001976005.1| GG22616 [Drosophila erecta] gi|190659192|gb|EDV56405.1| GG22616 [Drosophila erecta] Length = 393 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 88/344 (25%), Positives = 154/344 (44%), Gaps = 28/344 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 62 MERSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L DDER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 178 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I + D + FN +P++ KA+WAL + + Sbjct: 179 MYSVLIDTYIRDPNQREYLFNAIETMPAVKRKADWALSWI-------------SSKSANF 225 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ--- 282 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 HL + ++ ++ +A +E + + +P +G+N QY++F+A+R + Sbjct: 283 ----HLVQRPKHERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +G+ ++ T+NPF +M E+I L + NFFE +V EYQ+ Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVAEYQRMGVAS 380 >gi|320164906|gb|EFW41805.1| ribonucleotide reductase m2 polypeptide [Capsaspora owczarzaki ATCC 30864] Length = 352 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 91/349 (26%), Positives = 151/349 (43%), Gaps = 29/349 (8%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 T + G ++ +D + +L L P++Y W+ Y A + W EV + D Sbjct: 17 TAEEALVNGLSKLELD-EPLLKPNPHRFVLFPIQYHDVWKMYKKAEASFWTAEEVDLSKD 75 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W + L +ER I L FFA+S+ +V N++L + PE R + Q E Sbjct: 76 LNDW---DKLKSEERHFISHVLAFFAASDGIVNENLLLRFSTEVQIPEVRSFYCFQIAIE 132 Query: 125 AVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 +HS + +I D E FN +P + KA WAL++ Sbjct: 133 NIHSEMYSLLIDMYIKDSAEREKLFNAIETLPCVAKKAQWALRWI-------------SD 179 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 + + + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 180 RRSTFAHRLIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACML 239 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 L + ++ +A +E + + +P +G+N + Y++F+A+ Sbjct: 240 FGL-------LNNRPSNADVLAIIKDAVAIEQEFLTDALPVALIGMNGGLMKTYIEFVAD 292 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 R +G E +K ENPF +M +I L+ + NFFE RV EYQ+ + Sbjct: 293 RLLVALGQEKHYKV-ENPFDFMD-LISLQGKTNFFERRVGEYQKPGVMS 339 >gi|2465173|emb|CAA71741.1| ribonucleotide reductase (Class I) [Trypanosoma brucei brucei] Length = 337 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 87/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + + Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E + R +P I KA WA+++ Q V + E Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWI--------------GSQTSFPTRLVAFAAVE 178 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + ++ K Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------EKYIVNKLP 232 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++ Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M +I L+ + NFFE +V EYQ+ + Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323 >gi|298707394|emb|CBJ30029.1| conserved unknown protein [Ectocarpus siliculosus] Length = 380 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 28/345 (8%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +S ++ E + + +L L P++ W+ Y A W E+ + D Sbjct: 46 VSEMRRKEMEGTLKPEPLLVENPGRFVLFPIQDNEVWQMYKKAEACFWTAEELDLAHDHK 105 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ GLTDDER +K L FFA+S+ +V N+ + E R + Q E + Sbjct: 106 DWE---GLTDDERHFVKHVLAFFAASDGIVNENLASNFSSEIQLSEARCFYGFQIAIENI 162 Query: 127 HSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS + +I + D E FN VP + KA WAL++ D Sbjct: 163 HSEVYSLLIDTYVKDAAEKTHLFNAMETVPCVRRKARWALRWC-------------DPKL 209 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + V + EG++F F + L + M G+ + I RDE LH +F + Sbjct: 210 ASYAERLVAFAAVEGIFFSGSFCAVFWLKKRGLMPGLCFSNELISRDEGLHTDFACLLFR 269 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 ++ + P ++ ++ +A +E + +P +G+N+ QY++F A+R Sbjct: 270 KLVNKLP-------VERVAEIICDAVDIEKEFITSALPVELIGMNSALMRQYIEFCADRL 322 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 ++G E + T NPF WM E+I L+ + NFFE RV EY + Sbjct: 323 LMELGCEKKYNST-NPFDWM-EMISLQGKTNFFEKRVGEYSKSGV 365 >gi|71024571|ref|XP_762515.1| hypothetical protein UM06368.1 [Ustilago maydis 521] gi|46101992|gb|EAK87225.1| hypothetical protein UM06368.1 [Ustilago maydis 521] Length = 424 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 155/345 (44%), Gaps = 27/345 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 G+ + +++ +L S L P+++ W+ Y A + W E+ + DL W Sbjct: 83 FVGDVDLPEEEEPLLVETSRRFVLFPIRFHEIWQMYKKAEASFWTAEEIDLSKDLHDW-- 140 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D+ER I L FFA+S+ +V N+V + E R + Q E +HS T Sbjct: 141 DNKLNDNERHFISHVLAFFAASDGIVNENLVERFSSEVQAAEARCFYGFQIMMENIHSET 200 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + + + F+ +P + KA+WAL++ + Sbjct: 201 YSLLIDTYIREPEQREYLFDAVETIPVVKQKADWALRWI-------------SDKRATFA 247 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 248 ERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFS---- 303 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 HL + ++ EA +E A+ E++P +G+N+ QY++++A+R + Sbjct: 304 ---HLRRRAHPDTVLKIITEAVEIEKAFLCESIPVALIGMNSKLMCQYIEYVADRLLVSL 360 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 G + T PF +M+ I L+ + NFFE +V EY + + D Sbjct: 361 GNPVHYGST-CPFDFMTN-ISLEGKTNFFEKKVAEYAKAGVARKD 403 >gi|56713400|gb|AAW23440.1| ribonucleoside-diphosphate reductase [Vaccinia virus] gi|56713684|gb|AAW23722.1| ribonucleoside-diphosphate reductase [Vaccinia virus] gi|88854075|gb|ABD52493.1| ribonucleoside-diphosphate reductase subunit [Vaccinia virus] gi|167412519|gb|ABZ79953.1| ribonucleotide reductase small subunit [Vaccinia virus GLV-1h68] Length = 319 Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|74025552|ref|XP_829342.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834728|gb|EAN80230.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] Length = 337 Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats. Identities = 88/333 (26%), Positives = 154/333 (46%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + + Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E + R +P I KA WA+++ Q V + E Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWI--------------GSQTSFPTRLVAFAAVE 178 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + ++ K Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------EKYIVNKLP 232 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + ++ A L+E + + +P +G+N+ QY++F+A+R +G + + ++ Sbjct: 233 RDRVLEIICNAVLIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M +I L+ + NFFE +V EYQ+ + Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323 >gi|55742360|ref|NP_001007164.1| ribonucleoside-diphosphate reductase subunit M2 B [Danio rerio] gi|29561808|emb|CAD87804.1| novel protein similar to vertebrate ribonucleotide reductase M2 B (TP53 inducible) (RRM2B) [Danio rerio] Length = 349 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 100/352 (28%), Positives = 162/352 (46%), Gaps = 31/352 (8%) Query: 5 TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 T ++ Q G K V+ V+D+ +L + P++Y W+ Y A + W EV + Sbjct: 10 TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DL W +GL +E+ I L FFA+S+ +V N+V + + PE R + Q Sbjct: 70 SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E VHS + +I + D E FN + +P + KA+WALQ+ Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWI------------ 174 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + V + EG++F FA I L + M G+ + I RDE LH NF Sbjct: 175 -SDTNSTFGERLVAFAAVEGIFFSGSFAAIYWLKKRGLMPGLTYSNELISRDEGLHCNFA 233 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + + K + ++ +A +E + E +P +G+N +QY++F Sbjct: 234 CLIYSYLVK-------KPSVDRVNDIIAKAVSIEQEFLTEALPVNLIGMNCSLMKQYIEF 286 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +A+R +GL + +ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 287 VADRLLTDLGLPKAY-CSENPFDFM-ESISLEGKTNFFEKRVAEYQRLGVMS 336 >gi|3914640|sp|O15910|RIR2_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|2411479|gb|AAB70705.1| ribonucleotide reductase small subunit [Trypanosoma brucei] gi|261335314|emb|CBH18308.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 87/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + + Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E + R +P I KA WA+++ Q V + E Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWI--------------GSQTSFPTRLVAFAAVE 178 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + ++ K Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------EKYIVNKLP 232 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++ Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M +I L+ + NFFE +V EYQ+ + Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323 >gi|194036959|ref|XP_001925036.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Sus scrofa] Length = 351 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 157/342 (45%), Gaps = 28/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E ++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTSENEAKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NRLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + Sbjct: 138 YSLLIDTYIRDPKQREFLFNAIETMPYVKKKADWALRWIAD-------------RKATFG 184 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K + + R ++ A +E + E +P G +G+N +QY++F+A+R ++ Sbjct: 242 ----LVNKPSEARVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTEL 297 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 298 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337 >gi|90660281|gb|ABD97395.1| ribonucleotide reductase small subunit [Cowpox virus] Length = 333 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 29/337 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VN+ + +L + + P++Y W Y A + W EV + D+ W N LT Sbjct: 11 VNLVMEPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I Sbjct: 68 DEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLID 127 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + D E FN +P + KA+WA ++ D + + + Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAF 173 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 174 TAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLL 226 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ Sbjct: 227 HPPSEETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIY 286 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 T NPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 287 NVT-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321 >gi|189501948|ref|YP_001957665.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus 5a2] gi|189497389|gb|ACE05936.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus 5a2] Length = 355 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + L P+++ WE Y A + W E+ + DL W + L D ER Sbjct: 34 EPILQENKNRFVLFPIEHHDIWEFYKKAEASFWTAEEIDLGQDLKDWAN---LNDGERHF 90 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 91 ISHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGFQIAVENIHSETYSLLIDTYIKD 150 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN + + KA+WAL++ + Q + V + EG Sbjct: 151 PQERDKLFNAIDTLDCVKKKADWALRWIE---------------QASFAERLVAFAAVEG 195 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G++ + I RDE LH +F + HL K + Sbjct: 196 IFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLY------ANHLQNKLPE 249 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ R ++ +A +E + + +P +G+NA QY++F+A+R ++G ++ T N Sbjct: 250 ERVREIITDAVAIEKEFVTDALPVKLIGMNADLMSQYIEFVADRLLLELGCSKVYNAT-N 308 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E+I L+ + NFFE RV EYQ+ +K Sbjct: 309 PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMK 339 >gi|255037048|ref|YP_003087669.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM 18053] gi|254949804|gb|ACT94504.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM 18053] Length = 331 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 85/333 (25%), Positives = 149/333 (44%), Gaps = 29/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +L L P+K+ WE Y + W E+ + D+ W++ L+D ER Sbjct: 8 QEPLLTEDPLRFVLFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWEN---LSDGERH 64 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + + E + + Q E +HS T+ +I + Sbjct: 65 FISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFYGFQIAMENIHSETYSLLIDTYIK 124 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E +P + KA+WAL++ D + + + E Sbjct: 125 DSAEKDRLLRAIETIPCVQKKADWALKWI---------------DSPVFAERIIAFAAVE 169 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G++ + I RDE LH F + + H+ + Sbjct: 170 GIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCEFACLLYTK------HILNQLP 223 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 Q++ ++ +A +E + E +P +G+NA +QY+++IA+ ++G F + Sbjct: 224 QERVIEIMLDAVEIEKEFVSEALPVSLIGMNADLMKQYIEYIADFWLERLGCPKQFG-SA 282 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E+I L + NFFE RV EYQ+ + Sbjct: 283 NPFDFM-ELISLPGKTNFFEKRVGEYQKAGVMS 314 >gi|56404698|sp|O57175|RIR2_VACCA RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|2772676|gb|AAB96415.1| ribonucleotide reductase, small subunit [Vaccinia virus] gi|47088360|gb|AAT10430.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|160857924|emb|CAM58212.1| ribonucleotide reductase small subunit [Vaccinia virus Ankara] Length = 319 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|74025550|ref|XP_829341.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834727|gb|EAN80229.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|261335315|emb|CBH18309.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 87/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + + Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E + R +P I KA WA+++ Q V + E Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWI--------------GSQTSFPTRLVAFAAVE 178 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + ++ K Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------EKYIVNKLP 232 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++ Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M +I L+ + NFFE +V EYQ+ + Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323 >gi|281340156|gb|EFB15740.1| hypothetical protein PANDA_011632 [Ailuropoda melanoleuca] Length = 336 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 159/342 (46%), Gaps = 28/342 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E D++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 6 DTNENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 64 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 122 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + + Sbjct: 123 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWI-------------EDRKSTFG 169 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 170 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 226 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++ Sbjct: 227 ----LVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVEL 282 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G +F+ ENPF +M E I L+ + NFFE RV EYQ+ A + Sbjct: 283 GFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 322 >gi|328771482|gb|EGF81522.1| hypothetical protein BATDEDRAFT_16297 [Batrachochytrium dendrobatidis JAM81] Length = 336 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 99/345 (28%), Positives = 161/345 (46%), Gaps = 27/345 (7%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P++ + V ++ +L + L P+KY W Y A + W EV + D W Sbjct: 2 PLELPSESTLVQNEPILTPDPRRSVLFPIKYPAVWRMYKKAEASFWTAEEVDLSKDTLDW 61 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + + LTDDER I R L FFA+S+ +V N+V + + PE R + Q E +HS Sbjct: 62 EER--LTDDERYFISRVLAFFAASDGIVNENLVERFSQDVHIPEARYFYDFQIMIENIHS 119 Query: 129 HTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 + +I + D E F+ VP I KA+WAL++ + Sbjct: 120 EMYSLLIDTYIKDRKERAFLFDAIDTVPCIRKKADWALRWI-------------SDKKSS 166 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 167 FGERLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFTL- 225 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 L K + ++HEA +E ++ E++P +G+NA +QY++F+A+R Sbjct: 226 ------LNNKPTDSVIQQIIHEAVTIEQEFSTESLPVALIGMNANLMKQYIEFVADRLFI 279 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++G+ + NPF +M +I L+ + NFFE RV EYQ+ + Sbjct: 280 ELGMPKKYGV-GNPFDFMD-MISLQGKTNFFEKRVGEYQKSGVMN 322 >gi|255551489|ref|XP_002516790.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] gi|223543878|gb|EEF45404.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis] Length = 342 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 87/331 (26%), Positives = 151/331 (45%), Gaps = 29/331 (8%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +L ++ + P++Y WE Y A + W EV + D+ W++ L+ E+ I Sbjct: 21 PILKEQNQRFCMFPIRYKSLWEMYKKAEASFWTAEEVDLSQDVQQWET---LSVSEKHFI 77 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 L FFA+S+ +V N+ + PE R + Q E +HS + ++ + D Sbjct: 78 SHVLAFFAASDGIVLENLAARFLNDIQVPEARAFYGFQIAMENIHSEMYSLLLETYIKDS 137 Query: 143 GEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 E FN +P + KA WAL + + + V + EG+ Sbjct: 138 REKNRLFNAIETIPCVARKAKWALDWIHS--------------SSLYAERLVAFACVEGI 183 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 +F F I L + M G+ + I RDE LH +F + + ++ + Q Sbjct: 184 FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLQW-------Q 236 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319 K + ++HEA +E + + +P +G+N+ QY++F+A+R +G + + ENP Sbjct: 237 KVQQIVHEAVEIETEFVCDALPCALIGMNSTLMSQYIKFVADRLLVALGYQRKYNV-ENP 295 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 F WM E I L+ + NFFE RV +YQ+ + + Sbjct: 296 FDWM-EFISLQGKANFFERRVGDYQKASVMS 325 >gi|3914644|sp|O46310|RIR2_LEIAM RecName: Full=Ribonucleoside-diphosphate reductase small subunit; AltName: Full=Ribonucleotide reductase M2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|2828563|gb|AAC08302.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis] Length = 345 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 88/353 (24%), Positives = 156/353 (44%), Gaps = 28/353 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A + P + N +++ + L P++Y W KY + W E+ Sbjct: 4 VAAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEID 63 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W + L D ER IK L FFA S+ +V N+ + PE R + Q Sbjct: 64 LGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQ 120 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS T+ ++ + D E + + +P I KA W +++ Sbjct: 121 LMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWI----------- 169 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 Q + + EG++F F + L + M G+ + I RDE LH +F Sbjct: 170 ---GSSASFQQRLIGFAAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDF 226 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + N H+ K +++ ++ +A +E + + +P +G+NA QY++ Sbjct: 227 ACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIE 280 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 F+A+R +G E ++ T+ PF +M E+I L+ + NFFE RV EYQ+ + Sbjct: 281 FVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMS 331 >gi|44971395|gb|AAS49745.1| RPXV032 [Rabbitpox virus] Length = 319 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|324519017|gb|ADY47264.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum] Length = 376 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 162/353 (45%), Gaps = 28/353 (7%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 N+T + +K + +L + + P+KY W+ Y A + W EV + Sbjct: 38 NSTTRKAPEVTDKGDEEVVEPLLANNPNRFVIFPIKYHDIWDFYKRAVASFWTVEEVDLS 97 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D W++ L+D ER I R L FFA+S+ +V N+V + + PE R + Q Sbjct: 98 KDYQHWEN---LSDGERFFISRVLAFFAASDGIVNENLVERFAQEVQVPEARFFYGFQIM 154 Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E +HS + ++ + D+ E FN E I KA+WAL++ Sbjct: 155 IENIHSEMYSKMVETYIRDDNERKKLFNAINEFEFIKKKADWALKWIAD----------- 203 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 Q + + + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 204 --KQAPYAERLIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTHSNELISRDEGLHRDFAC 261 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + + +K K +++ ++ EA +E Y E +P G +G+N QY++++ Sbjct: 262 LMFSHLKK-------KPNKERIYEIIREAVKIEQEYLTEALPVGLIGMNCELMSQYIEYV 314 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 A+ ++ L+ ENPF +M+ I ++ + NFFE RV+EYQ+ L D Sbjct: 315 ADHLLTELKCPKLYNM-ENPFDFMAR-ISIEAKTNFFEKRVSEYQKAGVLSTD 365 >gi|438946|gb|AAA60776.1| homolog of vaccinia virus CDS F4L (ribonucleotide reductase, small chain); putative [Variola major virus] gi|94484491|gb|ABF23604.1| ribonucleotide reductase small subunit [Variola virus] gi|94484688|gb|ABF23800.1| ribonucleotide reductase small subunit [Variola virus] gi|94484886|gb|ABF23997.1| ribonucleotide reductase small subunit [Variola virus] gi|109724274|gb|ABG43399.1| ribonucleotide reductase small subunit [Variola virus] Length = 333 Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 29/337 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VN+ + +L + + P++Y W Y A + W EV + D+ W N LT Sbjct: 11 VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I Sbjct: 68 DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + D E FN +P + KA+WA ++ D + + + Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSASYGERLIAF 173 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLL 226 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ Sbjct: 227 YPPSEETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIKFVADRLISELGFKKIY 286 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 T NPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 287 NVT-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321 >gi|311748425|ref|ZP_07722210.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus sp. PR1] gi|126576938|gb|EAZ81186.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus sp. PR1] Length = 326 Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 154/335 (45%), Gaps = 29/335 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + + +L+ + L P+++ WE Y A + W E+ + D+ WKS L D E Sbjct: 1 MQQEPILSENKNRFVLFPIQHADIWEYYKKAEASFWTAEEIDLGQDMVDWKS---LNDGE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+ + E + + Q E +HS T+ +I + Sbjct: 58 RHFISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGFQIAMENIHSETYSLLIDTY 117 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D E FN + + KA+WAL++ D Q+ + + Sbjct: 118 IKDPSERDKLFNAIEHIDCVKKKADWALRWI---------------DNGNFQERLIAFAA 162 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F F I L + M G+ + I RDE LH +F + + H+ Sbjct: 163 VEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACHLYTK------HVVNP 216 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 ++ R ++ +A +E + + +P +G+N+ QY++F+A+R ++ E ++ Sbjct: 217 LPKETVREIIIDAVKIEKEFVTDALPVRLIGMNSDLMCQYIEFVADRLLLELDCEKVWNS 276 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 T NPF +M +I L+ + NFFE RV +YQ+ +K Sbjct: 277 T-NPFDFMD-MISLQGKTNFFEKRVGDYQKAGVMK 309 >gi|22164633|ref|NP_671546.1| EVM028 [Ectromelia virus] gi|22123774|gb|AAM92332.1|AF523264_28 EVM028 [Ectromelia virus] Length = 319 Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 89/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQVTEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R+++ +A +E + +P +G+N + Y++FIA+R ++G + ++ T N Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFIADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|111184227|gb|ABH08147.1| HSPV044 [Horsepox virus] Length = 319 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|255711354|ref|XP_002551960.1| KLTH0B03938p [Lachancea thermotolerans] gi|238933338|emb|CAR21522.1| KLTH0B03938p [Lachancea thermotolerans] Length = 403 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 94/332 (28%), Positives = 152/332 (45%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L L P+KY W+ Y A + W E+ + DL W N + ++ER Sbjct: 77 EEPLLMENKRRFVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENERF 134 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R + FFA+S+ +V N+V + +PE + + Q E +HS T+ +I + Sbjct: 135 FISRVIAFFAASDGIVNENLVENFSAEVQSPEAKCFYGFQIMMENIHSETYSLLIDTYIK 194 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WA+++ Q + + V + E Sbjct: 195 DPKESDFLFNAIETIPQIKEKAEWAIRWIQD-------------EDALFAERLVAFAAVE 241 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 242 GVFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 294 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ EA +E Y + +P +G+NA QY++F+A+R +G + + T Sbjct: 295 PAIIERIITEAVEIEQRYFRDALPVSLLGMNADLMNQYVEFVADRLLVALGNQKFYNVT- 353 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 354 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 384 >gi|195027582|ref|XP_001986661.1| GH20400 [Drosophila grimshawi] gi|193902661|gb|EDW01528.1| GH20400 [Drosophila grimshawi] Length = 393 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +L + P++Y W+ Y A + W EV + D+ W Sbjct: 62 MEKVAAPFDPSIEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDMTDW- 120 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 LTD+ER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 121 --VRLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I + D + FN +P++ KA+WAL + + Sbjct: 179 MYSVLIDTYIRDPHQRDYLFNAIETMPAVKRKADWALSWI-------------SSKAANF 225 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVMMFQ--- 282 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 HL + +++ ++ +A +E + + +P +G+N +Y++F+A+R + Sbjct: 283 ----HLVQRPSRERIIEIVSDAVTIEQEFLTDALPVNLIGMNCALMSEYIEFVADRLLVE 338 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +G+ ++ T+NPF +M E+I L + NFFE +V EYQ+ Sbjct: 339 LGVGKIYN-TKNPFTFM-EMISLDGKTNFFEKKVGEYQRMGVTS 380 >gi|195172750|ref|XP_002027159.1| GL20023 [Drosophila persimilis] gi|198459455|ref|XP_001361381.2| GA21447 [Drosophila pseudoobscura pseudoobscura] gi|194112972|gb|EDW35015.1| GL20023 [Drosophila persimilis] gi|198136695|gb|EAL25959.2| GA21447 [Drosophila pseudoobscura pseudoobscura] Length = 391 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +L + P++Y W+ Y A + W EV + D W Sbjct: 60 MEKTGSPFDPSIEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDATDWA 119 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 LTD+ER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 120 ---RLTDNERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 176 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I + + E FN +P++ KA+WA+ + + Sbjct: 177 MYSVLIDTYIREPQERDYLFNAIETMPAVKRKADWAMSWI-------------SSKSANF 223 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 224 AERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMY---- 279 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 HL + +++ ++ +A +E + E +P +G+N QY++F+A+R + Sbjct: 280 ---HHLVQRPKRERIIEIIRDAVEIEQEFLTEALPVNLIGMNCVLMSQYIEFVADRLLGE 336 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +G+ ++ T+NPF +M E+I L + NFFE +V EYQ+ + Sbjct: 337 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVAEYQRMGVVT 378 >gi|322368525|ref|ZP_08043093.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus paucihalophilus DX253] gi|320551809|gb|EFW93455.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus paucihalophilus DX253] Length = 330 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 165/327 (50%), Positives = 227/327 (69%), Gaps = 2/327 (0%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 + D N++LPL Y WA + Y + NN+W+P E+PMQDD++ W + + L+D ER +I+ Sbjct: 6 TDNEHDPNKILPLDYDWARDYYEAGVNNNWVPEEIPMQDDISQW-NGDALSDAERQLIEW 64 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 NLGFF+++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG D Sbjct: 65 NLGFFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPDY 124 Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 L+ MY VPSI K + + T+ + P FT T +EFL+DL FYV+ EG++FY G Sbjct: 125 LYGMYDRVPSIAEKDEFVVDLTRAIDRPDFTIETDADVREFLRDLVGFYVIMEGVFFYAG 184 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 FA +L L R NKMVGI +Q++YI+RDESLH+ FG+D+IN+I+ ENP+ WT F + + Sbjct: 185 FAMMLGLKRQNKMVGIGQQFEYILRDESLHVGFGVDLINEIRAENPNAWTDAFGDEVTDL 244 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 + A LE YA+E P +G++A +Y++ IA+RR Q+ L+ + TENPFPWMS Sbjct: 245 ITNAVELEKIYAYEACPDEILGMSAAQFAEYVEHIADRRLAQLDLDEQYG-TENPFPWMS 303 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKW 351 E +DL KEKNFFET+VTEYQ G L W Sbjct: 304 EQVDLNKEKNFFETQVTEYQSGGSLDW 330 >gi|323450429|gb|EGB06310.1| hypothetical protein AURANDRAFT_65685 [Aureococcus anophagefferens] Length = 349 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 84/330 (25%), Positives = 149/330 (45%), Gaps = 27/330 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L L P+++ W+ Y A + W E+ + D+ W L D ER Sbjct: 29 EPLLTEDPHRFVLFPIEHDDVWQMYKKAEASFWTAEEIDLCHDIKDWDQ--KLNDKERHF 86 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 87 IKHVLAFFAASDGIVNENLAQNFATEVQWAEARCFYGFQIAIENIHSEVYSLLIDTYIRD 146 Query: 142 ---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E +P +T KA WAL++ D D+ + + + EG Sbjct: 147 AKEKHECLTAIDTMPCVTKKAQWALRWC-------------DPDRASFAERIIAFAAVEG 193 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F + L + M G++ + I RDE +H +F + ++++ + P Sbjct: 194 IFFSGSFCAVFWLKKRGLMPGLSFSNELISRDEGMHCDFACLLYSKLRNKLP-------V 246 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + ++ +A +E + +P +G+N+ + QY++F A+R +G L++ T N Sbjct: 247 ETINALIGDAVTIEKEFVVSALPVELIGMNSRTMCQYIEFCADRLLLALGCPKLYEAT-N 305 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 PF WM E+I L+ + NFFE RV EY + Sbjct: 306 PFDWM-ELISLQGKTNFFEKRVGEYAKSGV 334 >gi|113195221|ref|YP_717351.1| ribonucleotide reductase small subunit [Taterapox virus] gi|90660497|gb|ABD97610.1| ribonucleotide reductase small subunit [Taterapox virus] Length = 319 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|223996990|ref|XP_002288168.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975276|gb|EED93604.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 335 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 89/345 (25%), Positives = 153/345 (44%), Gaps = 28/345 (8%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +S + E ++ +L L P+K W+ Y A + W E+ + +DL Sbjct: 1 MSDHRRAESEGRHAEEPLLKENPGRFVLFPIKEPEIWKMYKKAEASFWTAEEIDLAEDLK 60 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+S L+ +ER + L FFA+S+ +V N+ +++ E R + Q E + Sbjct: 61 DWES---LSINERHFVSHVLAFFAASDGIVNENLTGNFSTEVTSAEARCFYGFQIAVENI 117 Query: 127 HSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS T+ +I + D E N VP + KANWAL++ DA Sbjct: 118 HSETYSLLIDTYIKDAQEKDHLLNAIETVPCVQKKANWALRWC-------------DAGN 164 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + + + EG++F F I L + M G+ + I RDE LH +F + + Sbjct: 165 ASFAERCIAFAAVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHCDFACLIYS 224 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 ++ + P + ++ A +E + + +P +G+N+ QY++F A+R Sbjct: 225 KLVNQLPE-------SRIEEIITNAVEIEKEFVSDALPVELIGMNSKLMCQYIEFCADRL 277 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 +G + + NPF WM E+I L+ + NFFE RV EY + Sbjct: 278 LGALGCKKHYMAV-NPFEWM-EMISLQGKTNFFEKRVGEYAKSGV 320 >gi|66275840|ref|YP_232925.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|132629|sp|P11158|RIR2_VACCV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|335624|gb|AAA48244.1| F4L protein [Vaccinia virus] gi|335809|gb|AAA88680.1| ribonucleotide reductase (EC 1.17.4.1) small subunit [Vaccinia virus] gi|29692149|gb|AAO89322.1| ribonucleotide reductase small subunit [Vaccinia virus WR] Length = 319 Score = 318 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|297831106|ref|XP_002883435.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata] gi|297329275|gb|EFH59694.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata] Length = 341 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 158/348 (45%), Gaps = 29/348 (8%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 L Q + + + +L A++ + P++Y WE Y A + W EV + D+ Sbjct: 3 SLKESQRRDMDEDESKEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W+ LTD E+ I L FFA+S+ +V N+ + PE R + Q E Sbjct: 63 QQWE---ALTDSEKHFISHVLAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMEN 119 Query: 126 VHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +HS + ++ + D E FN +P I+ KA W L + Q+ Sbjct: 120 IHSEMYSLLLETFLKDSKEKDRLFNAIETIPCISKKAKWCLDWIQS-------------- 165 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 V + EG++F F I L + M G+ + I RDE LH +F + Sbjct: 166 PMSFAVRLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 225 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 + ++ + P +K ++HEA +E + + +P +G+N+ QY+QF+A+R Sbjct: 226 SLLQKQLPL-------EKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADR 278 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +G E +K ENPF WM E I L+ + NFFE RV EYQ+ + + Sbjct: 279 LLVTLGCERRYK-AENPFDWM-EFISLQGKTNFFEKRVGEYQKASVMS 324 >gi|885717|gb|AAA69333.1| C8L [Variola virus] gi|885826|gb|AAA69439.1| C8L [Variola virus] gi|94483878|gb|ABF22994.1| ribonucleotide reductase small subunit [Variola virus] gi|94484081|gb|ABF23196.1| ribonucleotide reductase small subunit [Variola virus] gi|94485084|gb|ABF24194.1| ribonucleotide reductase small subunit [Variola virus] gi|94485286|gb|ABF24395.1| ribonucleotide reductase small subunit [Variola virus] gi|94485489|gb|ABF24597.1| ribonucleotide reductase small subunit [Variola virus] gi|94485894|gb|ABF25000.1| ribonucleotide reductase small subunit [Variola virus] gi|94487109|gb|ABF26209.1| ribonucleotide reductase small subunit [Variola virus] gi|94487515|gb|ABF26613.1| ribonucleotide reductase small subunit [Variola virus] gi|94487716|gb|ABF26813.1| ribonucleotide reductase small subunit [Variola virus] gi|94488123|gb|ABF27218.1| ribonucleotide reductase small subunit [Variola virus] gi|94488323|gb|ABF27417.1| ribonucleotide reductase small subunit [Variola virus] gi|94488523|gb|ABF27616.1| ribonucleotide reductase small subunit [Variola virus] gi|94488724|gb|ABF27816.1| ribonucleotide reductase small subunit [Variola virus] gi|94488925|gb|ABF28016.1| ribonucleotide reductase small subunit [Variola virus] gi|94489125|gb|ABF28215.1| ribonucleotide reductase small subunit [Variola virus] gi|94489324|gb|ABF28413.1| ribonucleotide reductase small subunit [Variola virus] gi|94489527|gb|ABF28615.1| ribonucleotide reductase small subunit [Variola virus] gi|94489726|gb|ABF28813.1| ribonucleotide reductase small subunit [Variola virus] gi|94490135|gb|ABF29220.1| ribonucleotide reductase small subunit [Variola virus] gi|109724070|gb|ABG43196.1| ribonucleotide reductase small subunit [Variola virus] gi|109724681|gb|ABG43804.1| ribonucleotide reductase small subunit [Variola virus] gi|109724885|gb|ABG44007.1| ribonucleotide reductase small subunit [Variola virus] gi|109725088|gb|ABG44209.1| ribonucleotide reductase small subunit [Variola virus] gi|109725293|gb|ABG44413.1| ribonucleotide reductase small subunit [Variola virus] gi|109725496|gb|ABG44615.1| ribonucleotide reductase small subunit [Variola virus] gi|109725700|gb|ABG44818.1| ribonucleotide reductase small subunit [Variola virus] gi|109725903|gb|ABG45020.1| ribonucleotide reductase small subunit [Variola virus] gi|109726107|gb|ABG45223.1| ribonucleotide reductase small subunit [Variola virus] gi|109726310|gb|ABG45425.1| ribonucleotide reductase small subunit [Variola virus] gi|109726513|gb|ABG45627.1| ribonucleotide reductase small subunit [Variola virus] gi|156635013|gb|ABU91466.1| ribonucleotide reductase small subunit [Variola virus] gi|156635031|gb|ABU91483.1| ribonucleotide reductase small subunit [Variola virus] gi|156635049|gb|ABU91500.1| ribonucleotide reductase small subunit [Variola virus] gi|156635067|gb|ABU91517.1| ribonucleotide reductase small subunit [Variola virus] gi|156635103|gb|ABU91551.1| ribonucleotide reductase small subunit [Variola virus] gi|156635121|gb|ABU91568.1| ribonucleotide reductase small subunit [Variola virus] gi|156635139|gb|ABU91585.1| ribonucleotide reductase small subunit [Variola virus] gi|156635158|gb|ABU91603.1| ribonucleotide reductase small subunit [Variola virus] gi|156635176|gb|ABU91620.1| ribonucleotide reductase small subunit [Variola virus] gi|156635194|gb|ABU91637.1| ribonucleotide reductase small subunit [Variola virus] gi|156635212|gb|ABU91654.1| ribonucleotide reductase small subunit [Variola virus] gi|156635230|gb|ABU91671.1| ribonucleotide reductase small subunit [Variola virus] gi|156635248|gb|ABU91688.1| ribonucleotide reductase small subunit [Variola virus] gi|156635266|gb|ABU91705.1| ribonucleotide reductase small subunit [Variola virus] gi|156635284|gb|ABU91722.1| ribonucleotide reductase small subunit [Variola virus] gi|156635320|gb|ABU91756.1| ribonucleotide reductase small subunit [Variola virus] gi|156635338|gb|ABU91773.1| ribonucleotide reductase small subunit [Variola virus] gi|156635356|gb|ABU91790.1| ribonucleotide reductase small subunit [Variola virus] gi|156635374|gb|ABU91807.1| ribonucleotide reductase small subunit [Variola virus] gi|156635392|gb|ABU91824.1| ribonucleotide reductase small subunit [Variola virus] gi|157739431|gb|ABU91739.1| ribonucleotide reductase small subunit [Variola virus] Length = 319 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIKFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|302678465|ref|XP_003028915.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8] gi|300102604|gb|EFI94012.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8] Length = 331 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 90/333 (27%), Positives = 152/333 (45%), Gaps = 27/333 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++ +L L P++Y W+ Y A + W E+ + DL W+ N + D+E Sbjct: 4 ASEEPLLKESIRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWQ--NRMNDNE 61 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N++ + PE R + Q E +HS T+ +I + Sbjct: 62 RHFISHVLAFFAASDGIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTY 121 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 + E FN +P + KA WAL++ D+ V + Sbjct: 122 IREAAEREHLFNAVETIPCVARKAQWALRWIND-------------DRSSFGIRLVAFAA 168 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + M G+ + I RDE +H +F + HL + Sbjct: 169 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELITRDEGMHTDFACLLF-------AHLRRR 221 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 R ++ EA +E + + +P +G+N+ QY++F+A+R +G E ++ Sbjct: 222 PHPDVVRRIIMEAVTIEQEFLTDALPVSLIGMNSTLMCQYIEFVADRLLVALGNEKVYNV 281 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 T NPF +M +I L+ + NFFE RV++Y+ A Sbjct: 282 T-NPFDFMD-MISLQGKTNFFEKRVSDYKMAAV 312 >gi|289582310|ref|YP_003480776.1| ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099] gi|289531863|gb|ADD06214.1| Ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099] Length = 330 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 159/327 (48%), Positives = 229/327 (70%), Gaps = 2/327 (0%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 +A D N++LP+ Y WA E Y + NN+W+P E+PMQDD++ W + + L+D ER +++ Sbjct: 6 TDAEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVSQW-NGDALSDAERQLVEW 64 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 NLGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y SLG + Sbjct: 65 NLGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFEPDY 124 Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 ++ MY +PSI K + + T+ ++ F T + ++F++DL FYV+ EG++FY G Sbjct: 125 MYGMYDRIPSIAEKDEFVIDLTRVINQNGFVIETDEDLRDFIRDLVGFYVIMEGIFFYAG 184 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 FA +L L R NKMVGI +Q++YIMRDESLH+ FG+D+I+QI++ENP +WT F + + Sbjct: 185 FAMMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRMENPDVWTDAFGDEVVEL 244 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 + EA LE YA+E P +G++A +Y++ IA+RR Q+ L + T+NPFPW+S Sbjct: 245 ITEAVELEKIYAYEACPDEILGMSADQFAEYVEHIADRRLGQLDLPTQYG-TDNPFPWLS 303 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKW 351 E +DL KEKNFFET+VTEYQ G L W Sbjct: 304 EQVDLNKEKNFFETQVTEYQSGGSLDW 330 >gi|145537171|ref|XP_001454302.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124422057|emb|CAK86905.1| unnamed protein product [Paramecium tetraurelia] Length = 507 Score = 318 bits (815), Expect = 7e-85, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 160/351 (45%), Gaps = 31/351 (8%) Query: 5 TGLSPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T LS +Q + V N D+ +L + L P+KY W Y + W E+ + Sbjct: 170 TPLSNLQTSQPVVQQNECDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLY 229 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W+ LT DE+ IK L FFA+S+ +V N+ + PE R + Q Sbjct: 230 QDLKDWE---KLTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIA 286 Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E +HS T+ +I + DE E + VP I KA WA+++ Sbjct: 287 MENIHSETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKWIN------------ 334 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + + + + + EG++F F I + + + M G+ + I RDE LH +F Sbjct: 335 --NNDSFAERLIAFAAVEGIFFSGSFCAIFWIKKRSLMPGLTFSNELISRDEGLHTDFAC 392 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + H+ K Q+ ++ A +E + E +P +G+N+ +QY++F+ Sbjct: 393 LLYK-------HMINKLSIQRVHEIISSAVEIEKEFISEALPVELIGMNSNLMKQYIEFV 445 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 A+R +G ++ ++NPF WM +I L+ + NFFE RV +YQ+ + Sbjct: 446 ADRLIFALGAPKIYN-SKNPFEWMD-MISLQGKTNFFERRVGDYQKAGVMS 494 >gi|167519412|ref|XP_001744046.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778008|gb|EDQ91624.1| predicted protein [Monosiga brevicollis MX1] Length = 329 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 93/337 (27%), Positives = 159/337 (47%), Gaps = 28/337 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + + +L A +LP+++ W+ Y A + W EV + DL W N L D Sbjct: 6 EIQAEPLLRANPRRFVILPIQHDAIWKMYKKAEASFWTVEEVDLGRDLVDW---NKLNKD 62 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ IK L FFA+S+ +V N+V + PE R + Q E +HS + +I + Sbjct: 63 EQFFIKHVLAFFAASDGIVNENLVERFMTEVQLPEARCFYGFQIAIENIHSEMYSRLIET 122 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E FN +P++ KA WA+++ D+ + V + Sbjct: 123 YVNDSAEKDSLFNAIETLPAVRRKAEWAMRWI-------------SHDKASFGERVVAFA 169 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + + +K Sbjct: 170 AVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFSMLKK------- 222 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + +++ ++ +A +E + +P G +G+NA +QY++F+++R +G E +F Sbjct: 223 RPSKERVTGIIMDAVEIEQDFLTNALPCGLLGMNATLMKQYIEFVSDRLLVALGCEKIFN 282 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 +ENPF +M E I ++ + NFFE RV EYQ+ + Sbjct: 283 -SENPFDFM-ESISIEGKTNFFEKRVGEYQKAGVMAD 317 >gi|187607401|ref|NP_001119973.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus (Silurana) tropicalis] gi|165971068|gb|AAI58191.1| LOC100144925 protein [Xenopus (Silurana) tropicalis] Length = 346 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 31/348 (8%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 TG + G +++ L + P+ Y W+ Y A + W EV + D Sbjct: 13 TGDKNLTNGHSD---EEEPFLRKNPQRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKD 69 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 L W+ L +ER I L FFA+S+ +V N+V + + PE R + Q E Sbjct: 70 LVHWE---KLKPEERNFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIE 126 Query: 125 AVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 VHS + +I + D FN +P + KA WAL++ Sbjct: 127 NVHSEMYSLLIETYIKDPRRREFLFNAIETMPCVRKKAQWALRWI-------------SD 173 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 + + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 174 RKASFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLM 233 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 + + K +++ ++ A +E + E +P +G+N + Y++F+A+ Sbjct: 234 FHYLVK-------KPTEERVTEIIVNAVRIEQEFLTEALPVSLIGMNCTLMKTYIEFVAD 286 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 R ++G FK ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 287 RLLVELGCSKAFK-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 332 >gi|4836362|gb|AAD30422.1|AF117061_1 ribonucleotide reductase R2 subunit [Aedes albopictus] Length = 398 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 94/352 (26%), Positives = 159/352 (45%), Gaps = 28/352 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 +A N + + + + + +L + P++Y W+ Y A + W EV Sbjct: 58 LAKNEMSAAHKREQTPFDPSIEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVD 117 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DLA W+ L E+ I L FFA+S+ +V N+V + + E R + Q Sbjct: 118 LSKDLADWE---KLKSGEKHFISHVLAFFAASDGIVNVNLVERFSQEVQVTEARCFYGFQ 174 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E VHS + +I + D E FN +P + KA+WAL + Sbjct: 175 IAMENVHSEMYSLLIDTYIRDSKEREYLFNAIDNLPCVKKKADWALNWI----------- 223 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 + Q + V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 224 --SSKQANFGERVVAFAAVEGIFFSGTFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 281 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + L K Q++ ++ EA L+E + + +P +G+N QY++ Sbjct: 282 ACLMFKY-------LVQKPSQERVIEIIREAVLIEQEFLTKALPVDLLGMNCELMSQYIE 334 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 F A+R ++G++ ++ T+NPF +M E I L+ + NFFE +V EYQ+ + Sbjct: 335 FEADRLLLELGIDKIYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 384 >gi|254586079|ref|XP_002498607.1| ZYRO0G14388p [Zygosaccharomyces rouxii] gi|238941501|emb|CAR29674.1| ZYRO0G14388p [Zygosaccharomyces rouxii] Length = 412 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 97/333 (29%), Positives = 151/333 (45%), Gaps = 27/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L L P+KY W+ Y A + W E+ + DL W N +++ ER Sbjct: 88 DEPLLVENKRRFVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLDDWN--NKMSEGERY 145 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 146 FISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYSR 205 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WA+++ Q D + V + E Sbjct: 206 DTEESEFLFNAIENIPPIKEKAEWAIRWIQD-------------DTALYAERLVAFAAVE 252 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 253 GVFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNRPS 305 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ EA +E Y + +P +G+NA QY++F+A+R +G E + T Sbjct: 306 PDIVERIITEAVSIEKRYFEDALPVALLGMNAALMNQYVEFVADRLLVALGNEKYYNVT- 364 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 365 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 396 >gi|1808636|emb|CAA64118.1| G4L protein [Cowpox virus] Length = 319 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 87/332 (26%), Positives = 150/332 (45%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRDLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + ++++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVKSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|885759|gb|AAA69374.1| E4L [Variola virus] gi|5830589|emb|CAB54628.1| E4L protein [Variola minor virus] gi|94483674|gb|ABF22791.1| ribonucleotide reductase small subunit [Variola virus] gi|94484287|gb|ABF23401.1| ribonucleotide reductase small subunit [Variola virus] gi|94485692|gb|ABF24799.1| ribonucleotide reductase small subunit [Variola virus] gi|94486095|gb|ABF25200.1| ribonucleotide reductase small subunit [Variola virus] gi|94486298|gb|ABF25402.1| ribonucleotide reductase small subunit [Variola virus] gi|94486501|gb|ABF25604.1| ribonucleotide reductase small subunit [Variola virus] gi|94486703|gb|ABF25805.1| ribonucleotide reductase small subunit [Variola virus] gi|94486906|gb|ABF26007.1| ribonucleotide reductase small subunit [Variola virus] gi|94487312|gb|ABF26411.1| ribonucleotide reductase small subunit [Variola virus] gi|94487921|gb|ABF27017.1| ribonucleotide reductase small subunit [Variola virus] gi|94489931|gb|ABF29017.1| ribonucleotide reductase small subunit [Variola virus] gi|109724476|gb|ABG43600.1| ribonucleotide reductase small subunit [Variola virus] gi|156635085|gb|ABU91534.1| ribonucleotide reductase small subunit [Variola virus] Length = 319 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|224000239|ref|XP_002289792.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975000|gb|EED93329.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 335 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 89/328 (27%), Positives = 155/328 (47%), Gaps = 28/328 (8%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 + L P+ Y W Y + W E+ + DL+ W L DER I Sbjct: 6 TDEEGSRFSLFPIAYPDLWSMYKQHVASFWTADEIDLSADLSDWHK--KLNPDERHFISM 63 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142 L FFA ++ +V N+ R ++ PE R + Q E++H T+ +I + D Sbjct: 64 VLAFFAGADGIVVENLAERFCREVTVPEARCFYGFQMAMESIHQETYCLLIDTYITDPKV 123 Query: 143 -GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 LF+ + VPS+ KA+WA +Y + + V + EG++F Sbjct: 124 RERLFSAHATVPSVERKASWAQRYI--------------GSKASFAERLVAFAAVEGIFF 169 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 F I L + M G+ + I RDE LH +F + +++K+ K Q++ Sbjct: 170 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCSFACQLYSKLKL-------KLSQEEI 222 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 +T+++EA +E ++ + +P +G+N+ QY++F+A+R +G + ++ ++NPF Sbjct: 223 QTIINEAVDVEKSFICDALPVSLIGMNSRLMAQYIEFVADRMLTDLGYQAMYG-SKNPFD 281 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349 WM +I L+ + NFFE RV EYQ+ + Sbjct: 282 WMD-MISLEGKTNFFEKRVGEYQKSGVM 308 >gi|320585888|gb|EFW98567.1| ribonucleotide reductase small subunit [Grosmannia clavigera kw1407] Length = 378 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 103/341 (30%), Positives = 161/341 (47%), Gaps = 32/341 (9%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NNT +S I+A E ++ +L + L P+KY W+ Y + W E+ + Sbjct: 47 NNTAVSAIKAAEA-----EEPLLKENAQRFVLFPIKYHEIWQMYKKHEASFWTAEEIDLS 101 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W N L DDER + L FFA+S+ +V N+V + PE R + Q Sbjct: 102 KDLHDWN--NRLNDDERFFVSHILAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQIM 159 Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E VHS T+ +I + D + FN +P I KA+WAL++ Sbjct: 160 MENVHSETYSLLIDTYIKDTAQRTHLFNAIDTIPCIRKKADWALKWI------------S 207 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D + F Q L F V EG++F F+ I L + M G+ + I RDE LH +F Sbjct: 208 DRESTFAQRLVAFAAV-EGIFFSGAFSSIFWLKKRGLMPGLTFSNELISRDEGLHTDFAC 266 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + + HL + +Q ++ +A +E + E +P +G+N+ +QY++F+ Sbjct: 267 LLFS-------HLKNRPSKQLIEEIIVDAVKIEQEFLTEALPCALLGMNSTLMKQYIEFV 319 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 A+R +G + ++ T NPF +M E I L + NFFE RV Sbjct: 320 ADRLLVALGNDKVYNST-NPFDFM-ENISLGGKTNFFEKRV 358 >gi|74025548|ref|XP_829340.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834726|gb|EAN80228.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] Length = 337 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 86/333 (25%), Positives = 151/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +H T+ +I + + Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHCETYSVLIDTYVV 132 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E + R +P I KA WA+++ Q V + E Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWI--------------GSQTSFPTRLVAFAAVE 178 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + ++ K Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------EKYIVNKLP 232 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + ++ A +E + + +P +G+N+ QY++F+A+R +G + ++ Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHCN-SK 291 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M +I L+ + NFFE +V EYQ+ + Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323 >gi|132628|sp|P20493|RIR2_VACCC RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|335366|gb|AAA48018.1| putative F4L [Vaccinia virus Copenhagen] Length = 319 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|15229476|ref|NP_189000.1| RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate reductase [Arabidopsis thaliana] gi|27735240|sp|P50651|RIR2A_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain A; AltName: Full=Ribonucleoside-diphosphate reductase R2A subunit; Short=AtRNR2; Short=Protein R2at; AltName: Full=Ribonucleotide reductase small subunit A gi|13937232|gb|AAK50108.1|AF372971_1 AT3g23580/MDB19_7 [Arabidopsis thaliana] gi|9294514|dbj|BAB02776.1| ribonucleotide reductase [Arabidopsis thaliana] gi|23505945|gb|AAN28832.1| At3g23580/MDB19_7 [Arabidopsis thaliana] gi|332643258|gb|AEE76779.1| Ribonucleoside-diphosphate reductase small chain A [Arabidopsis thaliana] Length = 341 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 158/348 (45%), Gaps = 29/348 (8%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 L Q + ++ +L A++ + P++Y WE Y A + W EV + D+ Sbjct: 3 SLKEGQGRDMEEGESEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W+ LTD E+ I L FFA+S+ +V N+ + PE R + Q E Sbjct: 63 QQWE---ALTDSEKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMEN 119 Query: 126 VHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +HS + ++ + D E FN +P I+ KA W L + Q+ Sbjct: 120 IHSEMYSLLLETFIKDSKEKDRLFNAIETIPCISKKAKWCLDWIQS-------------- 165 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 V + EG++F F I L + M G+ + I RDE LH +F + Sbjct: 166 PMSFAVRLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 225 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 + ++ + P +K ++HEA +E + + +P +G+N+ QY+QF+A+R Sbjct: 226 SLLQKQLPL-------EKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADR 278 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +G E +K ENPF WM E I L+ + NFFE RV EYQ+ + + Sbjct: 279 LLVTLGCERTYK-AENPFDWM-EFISLQGKTNFFEKRVGEYQKASVMS 324 >gi|225432510|ref|XP_002279943.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 340 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 92/339 (27%), Positives = 154/339 (45%), Gaps = 29/339 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 +++ +L S + P++Y WE Y A + W EV + D+ W+S L Sbjct: 12 PDEEQEEEPILMKNSQRFCMFPIRYRQLWEMYKKAEASFWTAEEVDLSHDVQQWES---L 68 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 ++ E+ I L FFA+S+ +V N+ + PE R + Q E +HS + + Sbjct: 69 SNSEKHFISHVLAFFAASDGIVLENLAARFLHDIQIPEARAFYGFQIAMENIHSEMYSLL 128 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 + + D E FN + + KA WAL + Q+ + + Sbjct: 129 LETYIKDSKEKHRLFNAIESISCVAGKAKWALDWIQS--------------STLFAERLI 174 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F F I L + M G+ + I RDE LH +F + + ++ + P Sbjct: 175 AFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLPW 234 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 QK ++HEA +E + E +P +G+NA QY++F+A+R +G E Sbjct: 235 -------QKVHHIVHEAVEIETQFVCEALPCALIGMNATLMSQYIKFVADRLLVALGYER 287 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + ENPF WM E I L+ + NFFE RV +YQ+ + + Sbjct: 288 KYNV-ENPFDWM-EFISLQGKANFFERRVGDYQKASIMS 324 >gi|313675915|ref|YP_004053911.1| ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126] gi|312942613|gb|ADR21803.1| Ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126] Length = 331 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 157/339 (46%), Gaps = 29/339 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + D+ +L D L P+++ WE Y A + W E+ + D W++ L Sbjct: 3 EVTTFQDEPILKENKDRFVLFPIQHKDIWEFYKMAEASFWTAEEIDLSQDQKDWEN---L 59 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 T+ E IK L FFA+S+ +V N+ + E + + Q E VHS T+ + Sbjct: 60 TEGETHFIKHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGFQIAMENVHSETYSLL 119 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + D E FN + + KA+WAL++ D+ + + Sbjct: 120 IDTYVKDNKEKDKLFNAIDTMDCVKKKADWALRWI---------------DEGNYAERLI 164 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F F I L + M G+ + I RDE LH +F + N H Sbjct: 165 AFAAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYN------DH 218 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L K ++K ++ +A +E + +++P +G+NA QY++F+A+R ++ + Sbjct: 219 LVNKLSKEKVTAIITDAVEIEKEFVTDSLPVKLIGMNADLMCQYIEFVADRLLQELRCDK 278 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++ + NPF +M E+I L+ + NFFE RV +YQ+ +K Sbjct: 279 VYG-SSNPFDFM-EMISLQGKTNFFEKRVGDYQKAGVMK 315 >gi|302696699|ref|XP_003038028.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8] gi|300111725|gb|EFJ03126.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8] Length = 377 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 91/344 (26%), Positives = 152/344 (44%), Gaps = 27/344 (7%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 L+ + + +D+ +L L P++Y W Y A + W E+ + D+ Sbjct: 46 SLAGAASETVLIRAEDEPLLRESQRRFVLFPIQYDDIWAMYKQAQASFWTSEEITLAYDM 105 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W L D+ER IK L FFA+S+ +V N+V + E R + Q E Sbjct: 106 RDW--TERLDDNERNFIKHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMMEN 163 Query: 126 VHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +HS T+ +I + D E F +P I KA+WAL++ Sbjct: 164 IHSETYSLLIDTYIKDPQERDHLFAAIETIPCIKRKADWALRWI-------------SDK 210 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 + V + EG++F FA I L + M G+ + I RDE +H F + Sbjct: 211 SSTFAERLVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTEFACLLF 270 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 + HL + + ++ EA +E + + +P +G+NA QY++F+A+R Sbjct: 271 S-------HLRHRPHPSVVQRIVKEAVAIEHEFLSDALPVSLIGMNAALMRQYIEFVADR 323 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 + +G ++ T NPF +M +I L+ + NFFE RV+EY + Sbjct: 324 LLYSLGQNKIYNAT-NPFDFMD-MISLQGKTNFFEKRVSEYAKA 365 >gi|17974949|ref|NP_536463.1| C10L [Monkeypox virus Zaire-96-I-16] gi|17529816|gb|AAL40494.1|AF380138_36 C10L [Monkeypox virus Zaire-96-I-16] gi|51342196|gb|AAU01240.1| MPXV-WRAIR030 [Monkeypox virus] gi|58220500|gb|AAW67788.1| MPXV-SL-030 [Monkeypox virus] gi|59858836|gb|AAX09131.1| MPXV-COP-030 [Monkeypox virus] gi|68448710|gb|AAY96833.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68448912|gb|AAY97034.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68449113|gb|AAY97234.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68449313|gb|AAY97433.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|68449512|gb|AAY97631.1| ribonucleotide reductase small subunit [Monkeypox virus] gi|300872658|gb|ADK39060.1| ribonucleotide reductase small subunit [Monkeypox virus] Length = 319 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 147/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R ++ A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRFIITNAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|281200507|gb|EFA74725.1| ribonucleotide reductase small subunit [Polysphondylium pallidum PN500] Length = 335 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 91/333 (27%), Positives = 160/333 (48%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D L P+KY W+ Y A + W E+ + D+ W+ N L D+ER Sbjct: 6 EEPILKENKDRFVLFPIKYADIWQMYKKAEASFWTAEEIDLAGDIGDWE--NKLNDNERH 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + Sbjct: 64 FITNVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIK 123 Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D + +F+ +P++ KA+WAL++ ++ + + V + E Sbjct: 124 DSETKRNIFHAIDTIPAVKKKADWALRWI--------------SNSKSFAERLVAFAAVE 169 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + +++ K Sbjct: 170 GIFFSGSFCSIFWLKKRGLMHGLTFSNELISRDEGLHCDFACLLYQKLQ-------NKLD 222 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 T++ +A E + E++P +G+N+ S QY++F A+R +G + ++ + Sbjct: 223 NNTIETIIRDAVACEKEFITESLPVDLIGMNSRSMSQYIEFCADRLLLSLGYKKIYN-SS 281 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L+++ NFFE +V+EYQ+ K Sbjct: 282 NPFDWM-EMISLQRKTNFFEGKVSEYQKSGVAK 313 >gi|289742419|gb|ADD19957.1| ribonucleotide reductase beta subunit [Glossina morsitans morsitans] Length = 396 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 90/354 (25%), Positives = 157/354 (44%), Gaps = 28/354 (7%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + T + + + + +L + P++Y W+ Y A + W EV + Sbjct: 57 KDATVTTASDNSVAKFDPSIEPLLKENPKRFVIFPIQYPEIWKMYKKAEASFWTAEEVDL 116 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W N L+D ER I L FFA+S+ +V N+V + + E R + Q Sbjct: 117 SKDMDDW---NRLSDGERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQI 173 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E VHS + +I + +DE E FN +P + KA WAL + Sbjct: 174 AMENVHSEMYSLLIETYIMDEKEREYLFNAIETMPLVKKKAEWALAWI------------ 221 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + + + + EG++F FA I L + M G+ + I RDE LH F Sbjct: 222 -SSHSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNEMISRDEGLHCEFA 280 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + HL K +++ ++ +A +E + E +P +G+N+ S +Y+++ Sbjct: 281 VLMFK-------HLIQKPSKERILEIITDAVKIEKEFLTEALPVDLIGMNSESMCKYIEY 333 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +A+R ++ + + ENPF +M++ I + + NFFE RV EYQ+ D Sbjct: 334 VADRLLLELDVGKYY-LAENPFEFMNK-ISIDGKTNFFEKRVGEYQKIGVSSDD 385 >gi|256081213|ref|XP_002576867.1| ribonucleoside-diphosphate reductase small chain [Schistosoma mansoni] gi|238662153|emb|CAZ33104.1| ribonucleoside-diphosphate reductase small chain, putative [Schistosoma mansoni] Length = 365 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 91/338 (26%), Positives = 155/338 (45%), Gaps = 28/338 (8%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + ++ + +L L P++Y W Y A + W EV + D W+S L Sbjct: 37 KSEIELEPLLKPNPHRFVLFPIEYHDVWHFYKKAVASFWTVEEVDLSKDFIHWES---LK 93 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER I L FFA+S+ +V N++ + + PE R + Q E +HS + +I Sbjct: 94 VGERHFISYVLAFFAASDGIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLLI 153 Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 + D E FN + + KA WAL + + + V Sbjct: 154 DTYIKDSKERDFLFNAISNLTCVAKKAQWALDWI-------------GDSKSTFAERLVA 200 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++F FA I L + M G++ + I RDE LH +F + H+ Sbjct: 201 FAAVEGVFFSGSFAAIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLFK-------HI 253 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 K +++ +++ EA L+E + E +P +G+N QY++FIA+R ++G E + Sbjct: 254 IKKPPKERVESIIREAVLIEQEFLSEALPVSLIGMNCKLMCQYIEFIADRLLVELGYEKM 313 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + +++NPF +M E I ++ + NFFE RV EYQ+ + Sbjct: 314 Y-HSDNPFDFM-ENISIEGKTNFFEKRVGEYQRAGVMS 349 >gi|37551487|gb|AAQ93139.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|38348909|gb|AAR17885.1| ribonucleotide reductase small subunit [Vaccinia virus] gi|88900660|gb|ABD57572.1| VACV040 [Vaccinia virus] gi|90819703|gb|ABD98513.1| VACV-DUKE-051 [Vaccinia virus] Length = 319 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R ++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRYIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|332876813|ref|ZP_08444570.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685239|gb|EGJ58079.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 324 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 91/330 (27%), Positives = 153/330 (46%), Gaps = 28/330 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+++ W+ Y +A + W EV + DL W+ N L D+ER Sbjct: 4 EPLLQDNKDRFVIFPIQHNDIWQFYKNAEASFWTAEEVDLSPDLHDWQ--NKLNDNERFF 61 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I R L FFA+S+ +V N+ + + + PE R + Q E +HS + +I + D Sbjct: 62 ISRVLAFFAASDGIVNENLAINFLQEVQYPEARCFYGFQIMIENIHSEMYSLLIDTYVKD 121 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E +P +T KA WAL++ + + + + EG Sbjct: 122 PAEKDYLLRAIETIPCVTKKAKWALRWI---------------TKGSFAERLIAFAAVEG 166 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE LH +F + HL K + Sbjct: 167 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY------VNHLQNKLSE 220 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R ++ +A +E + + +P +G+NA QY++F+A+R +G ++ T N Sbjct: 221 ETIREIIVDAVAIEKEFVTDALPVKLIGMNAELMCQYIEFVADRLLVALGCNKVWNAT-N 279 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 PF +M E+I L+ + NFFE RV EYQ+ Sbjct: 280 PFDFM-ELISLQGKTNFFERRVGEYQKTGV 308 >gi|58260896|ref|XP_567858.1| ribonucleoside-diphosphate reductase [Cryptococcus neoformans var. neoformans JEC21] gi|134116993|ref|XP_772723.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255341|gb|EAL18076.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229939|gb|AAW46341.1| ribonucleoside-diphosphate reductase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 401 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 27/341 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 G+ D+ +L + L P+KY W+ Y A + W E+ + DL W+ Sbjct: 63 FVGDLDCEEKDEPLLKETNARFVLFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWE- 121 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D+ER I+ L FFA+S+ +V N+V + E + + Q E +H+ T Sbjct: 122 -NKLNDNERYFIEHVLAFFAASDGIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAET 180 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D F+ +P I KA+WAL++ + Sbjct: 181 YSLLIDTYIKDTARRNFLFDAIDTIPCIRKKADWALRWI-------------SDKRSCFG 227 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 228 ERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFT---- 283 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 HL + ++ EA +E + + +P +G+NA QY++F+A+R + Sbjct: 284 ---HLRRRPHPDTIARIIKEAVTIEQEFLTDALPVSLIGMNAKLMCQYIEFVADRLLVAM 340 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 G E ++ T NPF +M E+I L+ + NFFE+RV+ Y + Sbjct: 341 GNEKIWNST-NPFDFM-EMISLQGKANFFESRVSAYSKSGV 379 >gi|266919|sp|P29883|RIR2_VACCP RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|335710|gb|AAA48294.1| F14 [Vaccinia virus] Length = 319 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 86/332 (25%), Positives = 149/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N +T DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKVTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + + E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFRMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|330804590|ref|XP_003290276.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum] gi|325079602|gb|EGC33194.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum] Length = 335 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 92/334 (27%), Positives = 153/334 (45%), Gaps = 28/334 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + ++ +L D L P+KY W Y A + W E+ + DL W S L D+ Sbjct: 3 QIIEEPILKENKDRFVLFPIKYPDIWSMYKQAEASFWTAEEIDLAPDLNDWSS--KLNDN 60 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + Sbjct: 61 ERHFISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDT 120 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D + FN +P I KA+WAL++ + + + V + Sbjct: 121 YIKDNEQKSKLFNAIDTIPCIKKKADWALKWIN--------------NSDSFAERLVAFA 166 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F F I L + M G+ + I RDE LH NF + + L Sbjct: 167 AVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCNFACLLYTK-------LIN 219 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K + ++ +A + E + +++P +G+N+ S QY++F A+R +G + ++ Sbjct: 220 KLESKTLEAIIRDAVVCEKEFICDSLPVDLIGMNSRSMSQYIEFCADRLLVSLGYKKIYN 279 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 + NPF WM E+I L+++ NFFE +V EY + Sbjct: 280 AS-NPFDWM-EMISLQRKTNFFEGKVAEYAKTGV 311 >gi|328872436|gb|EGG20803.1| ribonucleotide reductase small subunit [Dictyostelium fasciculatum] Length = 335 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 90/333 (27%), Positives = 155/333 (46%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D L P+KY W Y A + W E+ + D+ W+ N L D+ER Sbjct: 6 EEPLLKENKDRFVLFPIKYTDIWNMYKKAEASFWTAEEIDLASDVNEWE--NKLNDNERH 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + Sbjct: 64 FIKNVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIK 123 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 + E FN +P + KA+WAL++ + + + V + E Sbjct: 124 NPDEKKVLFNAIETIPCVKKKADWALRWI--------------TNSKSFAERLVAFAAVE 169 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + N+ L K Sbjct: 170 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYNK-------LNNKLD 222 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + +++ +A E + +++P +G+N+ +Y++F A+R +G + ++ + Sbjct: 223 VKTIESIIRDAVECEKEFVTDSLPVDLIGMNSREMSKYIEFCADRLLVSLGYKKIYN-SA 281 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM E+I L ++ NFFE +V+EY + K Sbjct: 282 NPFDWM-EMISLMRKANFFEGKVSEYAKAGVAK 313 >gi|326916502|ref|XP_003204546.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Meleagris gallopavo] Length = 339 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 90/319 (28%), Positives = 149/319 (46%), Gaps = 28/319 (8%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++Y W Y A + W EV + DL W+S L +E+ I L FFA+S+ Sbjct: 33 FPIQYHDIWRMYKKAEASFWTAEEVDLSKDLQHWES---LKPEEKYFISHVLAFFAASDG 89 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYRE 151 +V N+V + + E R + Q E +HS + +I + D E FN Sbjct: 90 IVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIET 149 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 +P + KA+WA+++ + + V + EG++F FA I L Sbjct: 150 LPCVKKKADWAIRWI-------------GDKKATYGERVVAFAAVEGIFFSGSFASIFWL 196 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 + M G+ + I RDE LH +F + HL K +++ + ++ A L+ Sbjct: 197 KKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLIRKPSEERVKEIIMNAVLI 249 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E + E +P +G+N +QY++F+A+R ++G ++K ENPF +M E I L+ Sbjct: 250 EQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFRKIYKV-ENPFDFM-ENISLEG 307 Query: 332 EKNFFETRVTEYQQGAELK 350 + NFFE RV EYQ+ + Sbjct: 308 KTNFFEKRVGEYQRMGVMS 326 >gi|297209|emb|CAA48969.1| C8L [Variola virus] gi|745144|prf||2015436AF C8L gene Length = 333 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 90/337 (26%), Positives = 151/337 (44%), Gaps = 29/337 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VN+ + +L + + P++Y W Y A + W EV + D+ W N LT Sbjct: 11 VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I Sbjct: 68 DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + D E FN +P + KA+WA ++ D + + + Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAF 173 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLL 226 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++ R+++ +A +E + +P +G+N + YM+F+A+R ++G + ++ Sbjct: 227 YPPSEETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIY 286 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 T NP +M E I L+ + NFFE RV EYQ+ + Sbjct: 287 NVT-NPSDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321 >gi|302833193|ref|XP_002948160.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f. nagariensis] gi|300266380|gb|EFJ50567.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f. nagariensis] Length = 354 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 94/352 (26%), Positives = 153/352 (43%), Gaps = 28/352 (7%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 + + D+ +L + L P++Y WE Y A + W EV Sbjct: 7 TANARATSSSVGSPSELDEAVLRENPNRFTLFPIRYPDLWEFYKRAVASFWTVEEVDFTG 66 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL + + L ++ER IK L FFA+S+ +V N+ + PE R + Q Sbjct: 67 DLYDF--DHKLKEEERRFIKYVLAFFAASDGIVMENLSARFMSEVQVPEARAFYGFQIAM 124 Query: 124 EAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 E VHS + ++ D E FN + + ++ KA+WAL++ Sbjct: 125 ENVHSEMYSVLLDHYVRDPAERRQLFNAIQTIATVGKKADWALRWI-------------- 170 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 + + V + EG+ F F I L + M G++ I RDE LH +F Sbjct: 171 SSSNSFAERLVAFACVEGIHFSGSFCAIFWLKKRLLMPGLSFSNCLISRDEGLHCDFACC 230 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 + HL + +++ ++ EA LE + E + +G+NA QY++F+A Sbjct: 231 LY-------GHLKNRLSRERVVKIVDEAVRLEDEFCTEALSCELLGMNADLMRQYIRFVA 283 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +R +G + + T NPF WM E+I L+ + NFFE RV EYQ+ + D Sbjct: 284 DRLLVSLGYDKYYN-TVNPFDWM-EMISLQGKANFFERRVGEYQRACVMAGD 333 >gi|118383611|ref|XP_001024960.1| ribonucleoside-diphosphate reductase, beta subunit family protein [Tetrahymena thermophila] gi|89306727|gb|EAS04715.1| ribonucleoside-diphosphate reductase, beta subunit family protein [Tetrahymena thermophila SB210] Length = 376 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 96/358 (26%), Positives = 165/358 (46%), Gaps = 37/358 (10%) Query: 4 NTGLSPI--------QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55 TG++P+ + + +D+ +L + L P+KY WE Y + W Sbjct: 32 ATGMNPLPLLKSKNDEGKAPKEGYEDEPLLKDNPNRFVLFPIKYNKVWEMYKKELASFWT 91 Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 E+ + DL W+ LTD+ER IK L FFA+S+ +V N+ + PE R Sbjct: 92 ADEIDLYQDLKDWE---RLTDNERHFIKYVLAFFAASDGIVLENLAEQFMCEVQIPEARA 148 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSP 172 + Q E +HS T+ +I + DE E F + VP I KA WAL++ Sbjct: 149 FYGFQIAMENIHSETYSLLIDTYIKDEVEKDYLFKASQNVPVIHKKAQWALKWIN----- 203 Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 + + + + EG++F F I L + + M G+ + I RDE Sbjct: 204 ---------NNDNFASRLIAFAAIEGIFFSGSFCAIFWLKKRSLMPGLTFSNELISRDEG 254 Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292 LH +F + + + K +++ ++ EA +E + E +P +G+N+ Sbjct: 255 LHTDFACLLYSMLNK-------KLTKEEIYEIITEAVEIEKEFISEALPVELIGMNSNMM 307 Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +QY++F+A+R +G+ + ++NPF WM +I ++ + NFFE RV EYQ+ + Sbjct: 308 KQYLEFVADRLLFALGVPKFYN-SKNPFEWMD-MISIQGKTNFFEKRVGEYQKANVMS 363 >gi|145553335|ref|XP_001462342.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124430181|emb|CAK94969.1| unnamed protein product [Paramecium tetraurelia] Length = 355 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 96/351 (27%), Positives = 162/351 (46%), Gaps = 31/351 (8%) Query: 5 TGLSPIQAGEKRVNVD--DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T LS +QA + +N + D+ +L + L P+KY W Y + W E+ + Sbjct: 18 TPLSNVQASQTVLNQNYCDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLY 77 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL W+ LT DE+ IK L FFA+S+ +V N+ + PE R + Q Sbjct: 78 QDLKDWE---KLTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIA 134 Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E +HS T+ +I + DE E + VP I KA WA+++ Sbjct: 135 MENIHSETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKWIN------------ 182 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + + + + + EG++F F I + + + M G+ + I RDE LH +F Sbjct: 183 --ENDSFAERLIAFAAVEGIFFSGSFCAIFWIKKRSLMPGLTFSNELISRDEGLHTDFAC 240 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + HL K Q+ ++ A +E + E +P +G+N+ +QY++F+ Sbjct: 241 LLYK-------HLVNKMSNQRIHEIISSAVEIEKEFISEALPVELIGMNSNLMKQYIEFV 293 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 A+R +G ++ ++NPF WM +I L+ + NFFE RV +YQ+ + Sbjct: 294 ADRLIFALGAPKIYN-SKNPFEWMD-MISLQGKTNFFERRVGDYQKAGVMS 342 >gi|321263777|ref|XP_003196606.1| ribonucleoside-diphosphate reductase [Cryptococcus gattii WM276] gi|317463083|gb|ADV24819.1| Ribonucleoside-diphosphate reductase, putative [Cryptococcus gattii WM276] Length = 401 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 27/341 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 G+ D+ +L + L P+KY W+ Y A + W E+ + DL W+ Sbjct: 63 FVGDLDCEEKDEPLLKETNARFVLFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWE- 121 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D+ER I+ L FFA+S+ +V N+V + E + + Q E +H+ T Sbjct: 122 -NKLNDNERYFIEHVLAFFAASDGIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAET 180 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D F+ +P I KA+WAL++ + Sbjct: 181 YSLLIDTYIKDTARRNFLFDAMDTIPCIRKKADWALRWI-------------SDKRSCFG 227 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 228 ERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFT---- 283 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 HL + ++ EA +E + + +P +G+NA QY++F+A+R + Sbjct: 284 ---HLRRRPHPDTIARIIKEAVSIEQEFLTDALPVSLIGMNAKLMCQYIEFVADRLLVAL 340 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 G E ++ T NPF +M E+I L+ + NFFE+RV+ Y + Sbjct: 341 GNEKIWNST-NPFDFM-EMISLQGKANFFESRVSAYSKSGV 379 >gi|323098445|gb|ADX22683.1| ribonucleotide reductase small subunit [Monkeypox virus] Length = 319 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 87/332 (26%), Positives = 146/332 (43%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FF +S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFXASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R ++ A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRFIITNAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|224100309|ref|XP_002311826.1| predicted protein [Populus trichocarpa] gi|222851646|gb|EEE89193.1| predicted protein [Populus trichocarpa] Length = 342 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 92/341 (26%), Positives = 155/341 (45%), Gaps = 31/341 (9%) Query: 15 KRVNVDDK--RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +R+ +DK +L ++ + P++Y WE Y A + W EV + D+ W+ Sbjct: 11 ERIREEDKQEPILKEQNQRFCMFPIRYKELWEMYKKAEASFWTAEEVDLSRDMQQWE--- 67 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+D E+ I L FFA+S+ +V N+ + PE R + Q E +HS + Sbjct: 68 ALSDSEKHFISHVLAFFAASDGIVLENLAARFLYDVQIPEARAFYGFQIAMENIHSEMYS 127 Query: 133 YIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 ++ + D E FN +P + KA WAL + Q+ + Sbjct: 128 LLLETYIKDSREKHRLFNAIENIPCVAEKAKWALDWIQS--------------SMVFAER 173 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 V + EG++F F I L + M G+ + I RDE LH +F + + ++ + Sbjct: 174 LVAFACIEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQRQL 233 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 QK ++ EA +E + E +P +G+NA Y++F+A+R +G Sbjct: 234 HW-------QKVYHIVGEAVEIETKFVCEALPCALIGMNATLMGDYIKFVADRLLVALGY 286 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + + ENPF WM E I L+ + NFFE RV +YQ+ + + Sbjct: 287 QKKYNV-ENPFDWM-EFISLQGKANFFERRVGDYQKASVMS 325 >gi|9631087|ref|NP_047757.1| ribonucleotide reductase small subunit homolog [Lymantria dispar MNPV] gi|3822355|gb|AAC70306.1| ribonucleotide reductase small subunit homolog [Lymantria dispar MNPV] Length = 348 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 89/341 (26%), Positives = 150/341 (43%), Gaps = 28/341 (8%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 A E+ + + +L + P++Y W Y A + W EV + D + W+ Sbjct: 20 APERPFDPRAEPLLRENPRRFVIFPIQYPDMWRMYKKAEASFWTVEEVDLSKDTSDWE-- 77 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 L D+ER IK L FFA+S+ +V N+V + + E R + Q E VHS + Sbjct: 78 -RLNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVAEARCFYGFQIAMENVHSEMY 136 Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 +I + E N +P + KA WAL++ + + Sbjct: 137 STLIDTYVRSSEEKLRLLNAIETMPCVKEKAEWALRWIA-------------GREAAFGE 183 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 184 RLVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFK----- 238 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 HL + + R ++ +A +E + E +P +GLN + QY++F+A+R ++ Sbjct: 239 --HLVQRPSAARVREIVTDAVAIEQRFLTEALPVRLLGLNCETMSQYIEFVADRLLLELV 296 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 + T NP +M+ +I L+ + NFFE +V EYQ+ + Sbjct: 297 GAKHYN-TPNPLDFMN-LISLEGKTNFFEKKVGEYQKFGVM 335 >gi|544843|gb|AAB29634.1| C8L product [variola virus VAR, India-1967, Peptide, 333 aa] Length = 333 Score = 315 bits (806), Expect = 8e-84, Method: Composition-based stats. Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 29/337 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 VN+ + +L + + P++Y W Y A + W+ EV + D+ W N LT Sbjct: 11 VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWIVEEVDISKDINDW---NKLTP 67 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I Sbjct: 68 DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + D E FN +P + KA+WA ++ D + + + Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAF 173 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLL 226 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++ R+++ +A +E + +P +G+N + YM+F+A+R ++G + ++ Sbjct: 227 YPPSEETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIY 286 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 T NP +M E I L+ + NFFE RV EYQ+ + Sbjct: 287 NVT-NPSDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321 >gi|19113338|ref|NP_596546.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces pombe 972h-] gi|9297110|sp|P36603|RIR2_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|3378511|emb|CAA20100.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces pombe] Length = 391 Score = 315 bits (806), Expect = 8e-84, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 154/339 (45%), Gaps = 27/339 (7%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K+ + D+ +L L P+KY W+ Y A + W E+ + DL W N L Sbjct: 59 KKEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDW--DNKL 116 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 DER I L +FA+S+ +V N++ + PE R Q E +HS T+ + Sbjct: 117 NADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLL 176 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 + + + E F+ + SI AKA WAL++ D D + L Sbjct: 177 LDTYIREPKEKQRHFDAILTMGSIKAKAKWALRWIN------------DEDSTYAIRLVA 224 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F V EG++F FA I L + M G+ + I RDE LH +F + + H Sbjct: 225 FAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLMFS-------H 276 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L + ++ ++ EA +E Y + +P +G+N QY++F+A+R +G + Sbjct: 277 LKHRPGRKVVEAIIVEAVDIEKEYFTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDK 336 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + T NPF +M E I L + NFFE +V++YQ + Sbjct: 337 YYNVT-NPFDFM-ENISLAGKTNFFEKKVSDYQIAGVMS 373 >gi|323098642|gb|ADX22879.1| ribonucleotide reductase small subunit [Monkeypox virus] Length = 319 Score = 315 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 87/332 (26%), Positives = 146/332 (43%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FF +S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFXASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGXGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R ++ A +E + +P +G+N + Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRFIITNAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|327403795|ref|YP_004344633.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM 16823] gi|327319303|gb|AEA43795.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM 16823] Length = 324 Score = 315 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 158/335 (47%), Gaps = 28/335 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + + +L+ + L P+++ W Y A + W E+ + DL W++ L+DDE Sbjct: 2 ANAEPILSENKNRFVLFPIQHEDIWSFYKKAEASFWTAEEIDLSPDLIDWET--KLSDDE 59 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R +K L FFA+S+ +V N+ + E + + Q E +HS T+ +I + Sbjct: 60 RHFVKHVLAFFAASDGIVNENLAEHFLAEVQYTEAKFFYGFQVAMENIHSETYSLLIDTY 119 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D+ E FN + + KA+WAL++ D + V + Sbjct: 120 IKDQKEKNHLFNALDTIDCVRKKADWALRWI---------------DNGSFAERLVAFAA 164 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F F I L + M G++ + I RDE LH +F + + HL + Sbjct: 165 VEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYTK------HLIHQ 218 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +++ + ++ +A +E + + +P +G+NA QY++F+A+R ++G +F Sbjct: 219 LSKEQVQEIILDAVEIEKEFVTDALPVKLIGMNADLMAQYIEFVADRLLTELGNPKVFN- 277 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 T NPF +M +I ++ + NFFE RV EYQ+ + Sbjct: 278 TTNPFDFMD-MISIQGKTNFFEKRVAEYQKSGVMS 311 >gi|301117384|ref|XP_002906420.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] gi|262107769|gb|EEY65821.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] Length = 379 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 160/348 (45%), Gaps = 28/348 (8%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 N +S + E + + L + L P++ W+ Y A + W E+ + Sbjct: 42 NLEMSEFKRKEMNGEIPIEPFLVENPNRFVLFPIQEHEVWQMYKKAEASFWTAEELDLVH 101 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W + LTD+ER IK L FFA+S+ +V N+ + + PE R + Q Sbjct: 102 DLKDW---SKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAI 158 Query: 124 EAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 E +HS + +I + D E +P +T KA+WA+++ D Sbjct: 159 ENIHSEVYSLLIDTYIKDAIEKDHLLRAIETIPCVTKKAHWAIKWC-------------D 205 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 + + + EG++F F I L + M G++ + I RDE +H +F Sbjct: 206 PRVSSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGMHTDFACL 265 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 + ++ L TK + + ++ +A +E + +++P +G+N+ QY++F+A Sbjct: 266 LYSK-------LVTKLPESRVHEIVRDAVTIEHEFVRDSLPVELIGMNSGLMCQYIEFVA 318 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 +R + +G+ ++ + +NPF WM +I L+ + NFFE RV EY + Sbjct: 319 DRLLYSLGVSKIY-HAKNPFDWMD-MISLQGKTNFFEKRVGEYSKAGV 364 >gi|71648907|ref|XP_813233.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi strain CL Brener] gi|70878098|gb|EAN91382.1| ribonucleoside-diphosphate reductase small chain, putative [Trypanosoma cruzi] Length = 337 Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 86/337 (25%), Positives = 158/337 (46%), Gaps = 28/337 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + ++ +L D + P+KY W+KY + ++ W E+ + DLA W+ + + Sbjct: 12 LQEQEEPLLRENPDRYVIFPIKYHDIWKKYKESESSIWTVEEIDLSSDLADWE---KMNE 68 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ IK L FFA+S+ +V N+ + PE R + Q E VHS T+ ++ Sbjct: 69 GEKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLD 128 Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + D E + + +P I KANWA+++ ++ + V + Sbjct: 129 TYITDTEEKDRMLHAISTIPCIQKKANWAIRWIRS--------------SSSFAERLVAF 174 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F F + L + M G+ + I RDE LH +F + ++ Sbjct: 175 AAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------ENYIV 228 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 K +++ R ++ A +E + + +P +G+NA Y++F+A+R +G E + Sbjct: 229 NKLPKERIREIICSAVDIEREFICDAIPVRLLGMNADLMSTYIEFVADRLLVALGNERHY 288 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++NPF +M E+I L+ + NFFE +V EYQ+ + Sbjct: 289 N-SKNPFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 323 >gi|221120499|ref|XP_002159812.1| PREDICTED: similar to hCG23833 [Hydra magnipapillata] Length = 387 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 91/333 (27%), Positives = 154/333 (46%), Gaps = 27/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L L P++Y W+ Y A + W EV + D W+ L E+ Sbjct: 59 DEPLLRENPRRFVLFPIQYKDIWKMYKQAEASFWTVEEVDLAADAVHWEE--KLKPQEKY 116 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+V + + PE R + Q E +HS + +I +L Sbjct: 117 FISHVLAFFAASDGIVNENLVECFSQEVQLPEARAFYGFQIAIENIHSEMYSLLIDTLIK 176 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P + KA WAL++ D + V + E Sbjct: 177 DPIEKSNLFNAIETMPCVQKKAVWALKWIN-------------KDCASFSERVVAFAAVE 223 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + N + G+ + I RDE LH +F + H+ K Sbjct: 224 GIFFSGSFAAIFWLKKRNLLPGVTFSNELISRDEGLHCDFACLMYK-------HIVNKPS 276 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +++ + ++ +A +EI + E++P +G+N + Y++F A+R + +G + E Sbjct: 277 EERVKQIIRDAVAIEIEFLTESLPCDLLGMNKSLMKTYIEFCADRLINALGYSKEWNV-E 335 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E I L ++ NFFE+RV++YQ+ + Sbjct: 336 NPFDFM-ENISLARKANFFESRVSDYQKAGVMD 367 >gi|290977320|ref|XP_002671386.1| predicted protein [Naegleria gruberi] gi|284084954|gb|EFC38642.1| predicted protein [Naegleria gruberi] Length = 338 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 91/333 (27%), Positives = 159/333 (47%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L L PL+Y WE Y A + W EV + D+ W + LT +E+ Sbjct: 18 EEALLKENPHRFVLFPLEYPKIWEMYKKAMASFWTAEEVDLHTDITQWTT---LTPNEQH 74 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +H+ + +I +L Sbjct: 75 FIKSVLAFFAASDGIVNENLCQQFMAEVQIPEARCFYGFQIAIENIHAEMYSTLIETLIK 134 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D+ E FN VPS+ KA WA+++ ++ + + + E Sbjct: 135 DQRERHRLFNAIDTVPSVQKKARWAMKWIN--------------NENLFAERLLAFACVE 180 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+A + I RDE LH +F + + +K +TK Sbjct: 181 GIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHTDFACLLYSTLK------FTKLP 234 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 QQ +++ EA +E + E++P +G+N+ +QY++ +A+R +G + ++ + Sbjct: 235 QQVVHSLVSEAVEIEKEFICESLPVDLIGMNSRLMQQYIEMVADRLLVSLGYDKIYN-SP 293 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF WM+ +I + + NFFE +V EY + + Sbjct: 294 NPFDWMN-IISVSGKTNFFEKKVGEYAKANIMS 325 >gi|50286273|ref|XP_445565.1| hypothetical protein [Candida glabrata CBS 138] gi|49524870|emb|CAG58476.1| unnamed protein product [Candida glabrata] Length = 400 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 100/344 (29%), Positives = 155/344 (45%), Gaps = 27/344 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + E + D+ +LN D L P+KY W+ Y A + W E+ + DL W Sbjct: 64 VHRHELKELEKDEPLLNDDPDRLTLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN 123 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L ++ER I R L FFA+S+ +V N+V PE + + Q E +HS Sbjct: 124 --NRLNENERFFISRVLAFFAASDGIVNENLVENFSTEAVIPEAKAFYGFQIMIENIHSE 181 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 T+ +I + D E FN +P I KA WAL++ + Sbjct: 182 TYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIAN-------------SEALF 228 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 229 AERLVAFAAIEGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLF---- 284 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 HL K + ++ EA +E Y + +P +G+NA QY++F+A+R Sbjct: 285 ---AHLNHKPDPEVVERIVTEAVEIEQRYFLDALPVALLGMNAQLMNQYVEFVADRLLVA 341 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 G + ++ ENPF +M E I L + NFFE RV++YQ+ + Sbjct: 342 FGNKKVYNV-ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383 >gi|194755279|ref|XP_001959919.1| GF11796 [Drosophila ananassae] gi|190621217|gb|EDV36741.1| GF11796 [Drosophila ananassae] Length = 393 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 89/342 (26%), Positives = 155/342 (45%), Gaps = 28/342 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +L + P++Y W+ Y A + W EV + DL W Sbjct: 62 MEKSATPFDPSLEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L DDER I L FFA+S+ +V N+V + + E R + Q E VHS Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 178 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I + D + FN +P++ KA+WAL + + Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALAWI-------------SSKSANF 225 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQ--- 282 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 HL K +++ ++ +A +E + + +P +G+N QY++F+A+R + Sbjct: 283 ----HLVQKPRRERIIEIIRDAVDIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 +G+ ++ T+NPF +M E+I L + NFFE +V EYQ+ Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVGEYQRMGV 378 >gi|302682638|ref|XP_003031000.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8] gi|300104692|gb|EFI96097.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8] Length = 362 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 89/339 (26%), Positives = 153/339 (45%), Gaps = 27/339 (7%) Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 G+ ++ +L L P++Y W Y + W E+ + DL W+ + Sbjct: 34 GDVDCPEHEEPLLKDSISRFVLFPIQYHEIWAMYKKEEASFWTAEEMDLSKDLHDWEER- 92 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 + D+ER I L FFA+S+ +V N++ + PE R + Q E VHS T+ Sbjct: 93 -MNDNERHFISHVLAFFAASDGIVNENLLTRFCGEVKVPEARCFYGFQIMMENVHSETYS 151 Query: 133 YIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 +I + D + N +P + KA WAL++ D F L Sbjct: 152 LLIDTYIRDPAQRTFLLNAVETIPCVRKKAEWALRWIA------------DRRSSFAIRL 199 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 F V EG++F FA I L + M G+ + I RDE +H +F ++ ++ Sbjct: 200 VAFSAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELITRDEGMHTDFACLLLTHMRR-- 256 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 + + ++ EA +E + + +P +G+NA QY++F+A+R +G Sbjct: 257 -----RPHPEVIEMIIKEAVAIEKEFLTDALPVSLIGMNADLMCQYIEFVADRLLVALGN 311 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 + ++ T NPF +M +I L+ + NFFE RV++Y+ A Sbjct: 312 DKVWNAT-NPFDFMD-MISLQGKTNFFEKRVSDYKIAAV 348 >gi|297449|emb|CAA46231.1| ribonucleotide reductase, small subunit [Schizosaccharomyces pombe] gi|447147|prf||1913428B ribonucleotide reductase:SUBUNIT=small Length = 391 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 155/339 (45%), Gaps = 27/339 (7%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K+ + D+ +L L P+KY W+ Y A + W E+ + DL W N L Sbjct: 59 KKEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDW--DNKL 116 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 DER I L +FA+S+ +V N++ + PE R Q E +HS T+ + Sbjct: 117 NADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLL 176 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 + + + E F+ + SI AKA WAL++ D D + L Sbjct: 177 LDTYIREPKEKQRHFDAILTMGSIKAKAKWALRWIN------------DEDSTYAIRLVA 224 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F V EG++F FA I L + M G+ + I RDE LH +F + + H Sbjct: 225 FAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLMFS-------H 276 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L + ++ + ++ EA +E Y + +P +G+N QY++F+A+R +G + Sbjct: 277 LKHRPGRKLLKPIIVEAVDIEKEYFTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDK 336 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + T NPF +M E I L + NFFE +V++YQ + Sbjct: 337 YYNVT-NPFDFM-ENISLAGKTNFFEKKVSDYQIAGVMS 373 >gi|306478720|ref|NP_042072.2| Ribonucleoside-diphosphate reductase small chain [Variola virus] gi|464615|sp|P33799|RIR2_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 319 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R+++ +A +E + +P +G+N + YM+F+A+R ++G + ++ T N Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 P +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PSDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|322817571|gb|EFZ25271.1| ribonucleoside-diphosphate reductase small chain, putative [Trypanosoma cruzi] Length = 337 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 87/336 (25%), Positives = 157/336 (46%), Gaps = 28/336 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ +L D + P+KY W+KY A ++ W E+ + DLA W+ + + Sbjct: 13 QEQEEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWE---KMNEG 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ IK L FFA+S+ +V N+ + PE R + Q E VHS T+ ++ + Sbjct: 70 EKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDT 129 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E + + +P I KANWA+++ ++ + V + Sbjct: 130 YITDTEEKDRMLHAISTIPCIQKKANWAIRWIRS--------------SSSFAERLVAFA 175 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F F + L + M G+ + I RDE LH +F + ++ Sbjct: 176 AVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------ENYIVN 229 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K ++ R ++ A +E + +++P +G+NA Y++F+A+R +G E + Sbjct: 230 KLPTERIREIICSAVDIEREFICDSIPVRLLGMNADLMSTYIEFVADRLLVALGNERHYN 289 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++NPF +M E+I L+ + NFFE +V EYQ+ + Sbjct: 290 -SKNPFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 323 >gi|86132508|ref|ZP_01051102.1| ribonucleoside-diphosphate reductase small chain [Dokdonia donghaensis MED134] gi|85817069|gb|EAQ38253.1| ribonucleoside-diphosphate reductase small chain [Dokdonia donghaensis MED134] Length = 328 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 92/333 (27%), Positives = 156/333 (46%), Gaps = 28/333 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+++ WE Y + + W E+ + DL WK LTDDER Sbjct: 5 EPILAENKDRFVIFPIQHDDIWEWYKKSEASFWTAEEIDLHQDLVDWK--GKLTDDERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E FN P+I KA+WAL++ D + + + EG Sbjct: 123 EVEKDKLFNALENFPAIKKKADWALKWI---------------DSPSFAERLIAFAAVEG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + N HL K + Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHL------HNHHLVNKVPK 221 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ ++ A +E + E++P +G+N+ QY++++ +R ++ E ++ T N Sbjct: 222 ERITEIIVNALDIEREFITESLPVSLIGMNSNLMTQYLEYVTDRLLTELDCEKVYN-TAN 280 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 PF +M +I L+ + NFFE RV EYQ+ +K Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGEYQKAGVVKD 312 >gi|299747484|ref|XP_001837064.2| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] gi|298407540|gb|EAU84681.2| ribonucleotide reductase small subunit [Coprinopsis cinerea okayama7#130] Length = 379 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 89/339 (26%), Positives = 153/339 (45%), Gaps = 28/339 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 GE + ++ +L L P++Y W Y A + W E+ + D+ W Sbjct: 44 FVGEVDLPESEEPLLKPSPKRLTLYPIQYPEIWTHYKRAQASFWTAEEIDLSHDMMDW-- 101 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 + LT+ ER + R L FFASS+ +V N+V + PE R + Q E VHS T Sbjct: 102 -SKLTNAERHFLSRILAFFASSDGIVNENLVERFSSEVQVPEARCFYGFQVMIENVHSET 160 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D E F +PSI KA WAL +T Sbjct: 161 YSLLIDTYIKDPEERDFLFRAIETIPSIQRKAEWALTWT-------------SDKSTTFA 207 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + V EG++F FA I + + + G+ + I RDE +H +F + ++ Sbjct: 208 ERLVAFAVVEGVFFSGSFAAIFWMRKRGLLPGLTFSNELISRDEGMHTDFACLLFAYLRK 267 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 + ++ EA +E + + +P +G+N+ QY++F+A+R + Sbjct: 268 -------RPHSDTILAIVTEAVEIEKEFFSDALPVSLIGMNSSLMNQYIEFVADRLLTSL 320 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 G + + + +NPF +M E+I ++ + NFFE RV++Y + Sbjct: 321 GNDKHY-HVDNPFDFM-ELISMEGKANFFEKRVSDYAKA 357 >gi|328700093|ref|XP_001944536.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Acyrthosiphon pisum] Length = 361 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 91/351 (25%), Positives = 151/351 (43%), Gaps = 28/351 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M N + A + + +L + P+ Y W Y + W EV Sbjct: 18 MTNKNFFESVSAYRANFDATIEPLLKDNPRRFVIFPIIYDDIWAMYKKQEASFWNVEEVN 77 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 ++ DL W LTDDER I L FFA+S+ +V N+V + + E R + Q Sbjct: 78 LKSDLEDW---MKLTDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQ 134 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS + +I + D E FN +P + KA+WAL++ Sbjct: 135 IMMENIHSEMYSLLIDTYIQDPKEKDFLFNAIETMPCVKKKADWALKWI----------- 183 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 + + V + EG++F FA + L + M G+ + I RDE LH +F Sbjct: 184 --SDSKATFGERLVAFAAVEGIFFSGSFAALFWLKKRGLMPGLTFSNELISRDEGLHTDF 241 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + HL K Q ++ EA +E + +P VG++ Y++ Sbjct: 242 ACLLFK-------HLEQKPPQAVITHIICEAVTIEQDFLTNALPVRMVGMSCEKMAVYIE 294 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 F+A+R +++G ++ + NPFP+M +I + + NFFE RV +YQ+ + Sbjct: 295 FVADRLLNELGCPTVY-RSSNPFPFMD-LISQQGKTNFFEKRVGDYQKASV 343 >gi|87311395|ref|ZP_01093515.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula marina DSM 3645] gi|87285807|gb|EAQ77721.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula marina DSM 3645] Length = 313 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 169/313 (53%), Positives = 230/313 (73%), Gaps = 3/313 (0%) Query: 1 MANNTGLSPIQAGEK-RVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTE 58 M+ + ++ G+ RV +DKR++N + DVNQL+PLKY WAWE Y++ C NHWMPTE Sbjct: 1 MSIPNVENQLETGDGQRVRANDKRLVNCSQVDVNQLMPLKYNWAWEHYMNGCANHWMPTE 60 Query: 59 VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118 VPM D+ W+S + LTDDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLL Sbjct: 61 VPMTKDIETWRS-DKLTDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLL 119 Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 RQAFEEAVHSHTF Y++ SLGL+EGE+FNMY EVP+I K + ++ T + SP F+T + Sbjct: 120 RQAFEEAVHSHTFLYVVESLGLNEGEIFNMYNEVPAIARKDQFEMKLTAEVLSPDFSTDS 179 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + Q FL++L +Y++ EG++FYTGF +LS R N M GI EQ+QYI+RDE++HLNFG Sbjct: 180 YEGLQAFLKNLIGYYIIMEGIFFYTGFVMVLSFHRRNLMTGIGEQFQYILRDETVHLNFG 239 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 ID+IN IK ENP LWT EFQ + ++ +A LEI YA + +P G +GLN Y+ + Sbjct: 240 IDLINGIKAENPDLWTAEFQAEIIDLIKQAVELEIEYAGDCLPNGILGLNRDLFRDYVHY 299 Query: 299 IANRRCHQIGLEP 311 +A+RR +IGL Sbjct: 300 VADRRVERIGLPK 312 >gi|325953830|ref|YP_004237490.1| ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922] gi|323436448|gb|ADX66912.1| Ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922] Length = 323 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 87/331 (26%), Positives = 154/331 (46%), Gaps = 28/331 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + + P+++ W+ Y A + W EV + D+ W+ N L DER Sbjct: 2 NEPILQNNKNRFVIFPIQHDDIWQFYKKAEASFWTAEEVDLSSDMNDWQ--NKLNKDERY 59 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+ + + + PE R + Q E +HS + +I + Sbjct: 60 FISHVLAFFAASDGIVNENLAVNFVQEVQYPEARFFYGFQIMIENIHSEMYSLLIDTYIK 119 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E +P + KA+WAL++ ++ + + + + E Sbjct: 120 DPKEKDHLLRAIETIPCVGKKADWALEWIES---------------DNFAERLIAFAAVE 164 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + HL K Sbjct: 165 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY------VNHLKNKLP 218 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ + ++ +A +E + E +P +G+NA QY++F+A+R +G + ++ T Sbjct: 219 EETVQKIIADAVEVEKEFVTEALPVRLIGMNAELMCQYIEFVADRLLDALGCKKVWNAT- 277 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 NPF +M E+I L+ + NFFE RV EYQ+ Sbjct: 278 NPFDFM-ELISLQGKTNFFERRVGEYQKSGV 307 >gi|261335316|emb|CBH18310.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei gambiense DAL972] Length = 337 Score = 313 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 86/333 (25%), Positives = 152/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A ++ W + + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVENIYLGNDMTDWE---KLDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + + Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E + R +P I KA WA+++ Q V + E Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWI--------------GSQTSFPTRLVAFAAVE 178 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + ++ K Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------EKYIVNKLP 232 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++ Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M +I L+ + NFFE +V EYQ+ + Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323 >gi|6969682|gb|AAF33894.1| TF4L [Vaccinia virus Tian Tan] Length = 319 Score = 313 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 89/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT DE+ Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE L +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLRCDFACLMFK-------HLLHPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + R+++ +A +E + +P +G+N E Y++F+A+R ++G + ++ T N Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMETYIEFVADRLISELGFKKIYNVT-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQQ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQQMGVMS 307 >gi|124010268|ref|ZP_01694921.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla marina ATCC 23134] gi|123983653|gb|EAY24093.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla marina ATCC 23134] Length = 330 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 89/334 (26%), Positives = 152/334 (45%), Gaps = 28/334 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + +L + + L P++ W+ Y A + W E+ + DL W L DD Sbjct: 3 NTVSEPLLESVDNRFVLFPIQQNDIWQMYKQAEASFWTAEEIDLAQDLKDWDE--KLNDD 60 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I L FFA+S+ +V N+ + + +PE R + Q E +H+ T+ +I + Sbjct: 61 ERHFITHVLAFFAASDGIVNENLAVNFLEEVKSPEARCFYGFQVAIENIHAETYSLLIDT 120 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E FN VP + KA WAL++ D+ + + + Sbjct: 121 YIKDADEKHRLFNALETVPCVKKKAEWALRWI---------------DKGSFAERLIAFA 165 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F F I L + M G++ + I RDE LH +F + N Sbjct: 166 AVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYNSYIK------N 219 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K + +++ A +E + + +P +G+N+ +Y++F+A+R ++G E + Sbjct: 220 KLPNETVVSIIKNAVEIEKEFVTDALPVKLIGMNSDLMSEYIEFVADRLLVELGCEKQYN 279 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 T NPF +M E+I L+ + NFFE RV+EY + Sbjct: 280 -TANPFDFM-EMISLEGKTNFFEKRVSEYSKAGV 311 >gi|840719|emb|CAA54549.1| ribonucleotide reductase R2 [Arabidopsis thaliana] Length = 340 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 98/348 (28%), Positives = 159/348 (45%), Gaps = 30/348 (8%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 L Q + ++ +L A++ + P++Y WE Y A + W EV + D+ Sbjct: 3 SLKEGQGRDMEEGESEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W+ LTD E+ I L FFA+S+ +V N+ + PE R + Q E Sbjct: 63 QQWE---ALTDSEKHFISHILAFFAASDGIVLENLA-RFLNDVQVPEARAFYGFQIAMEN 118 Query: 126 VHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +HS + ++ + D E FN +P I+ KA W L + Q+ Sbjct: 119 IHSEMYSLLLETFIKDSKEKDRLFNAIETIPCISKKAKWCLDWIQS-------------- 164 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 V + EG++F F I L + M G+ + I RDE LH +F +I Sbjct: 165 PMSFAVRLVAFACAEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLI 224 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 + +++ P +K ++HEA +E + + +P +G+N+ QY+QF+A+R Sbjct: 225 SLLQLHVPL-------EKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADR 277 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +G E +K ENPF WM E I L+ + NFFE RV EYQ+ + + Sbjct: 278 LLVTLGCERTYK-AENPFDWM-EFISLQGKTNFFEKRVGEYQKASVMS 323 >gi|18640273|ref|NP_570429.1| CMLV039 [Camelpox virus] gi|18482949|gb|AAL73746.1|AF438165_36 ribonucleotide reductase small subunit [Camelpox virus M-96] gi|19717972|gb|AAG37497.1| CMP39L [Camelpox virus CMS] Length = 319 Score = 312 bits (800), Expect = 4e-83, Method: Composition-based stats. Identities = 85/332 (25%), Positives = 147/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P++Y W Y A + W EV + D+ W N LT +E+ Sbjct: 2 EPILAKNQNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPNEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WA ++ D + + + EG Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLYPPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + +++ +A +E + +P +G+N + Y++F+A+R ++G + ++ N Sbjct: 218 ETVISIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVI-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV EYQ+ + Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307 >gi|71416121|ref|XP_810103.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi strain CL Brener] gi|70874586|gb|EAN88252.1| ribonucleoside-diphosphate reductase small chain, putative [Trypanosoma cruzi] Length = 337 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 87/336 (25%), Positives = 157/336 (46%), Gaps = 28/336 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ +L D + P+KY W+KY A ++ W E+ + DLA W+ + + Sbjct: 13 QEQEEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWE---KMNEG 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ IK L FFA+S+ +V N+ + PE R + Q E VHS T+ ++ + Sbjct: 70 EKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDT 129 Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E + + +P I KANWA+++ ++ + V + Sbjct: 130 YITDTEEKDRMLHAISTIPCIQKKANWAIRWIRS--------------SSSFAERLVAFA 175 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F F + L + M G+ + I RDE LH +F + ++ Sbjct: 176 AVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------ENYIVN 229 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K ++ R ++ A +E + +++P +G+NA Y++F+A+R +G E + Sbjct: 230 KLPTERIREIICSAVDIEREFICDSIPVRLLGMNADLMSTYIEFVADRLLVALGNERHYN 289 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++NPF +M E+I L+ + NFFE +V EYQ+ + Sbjct: 290 -SKNPFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 323 >gi|322795965|gb|EFZ18591.1| hypothetical protein SINV_11129 [Solenopsis invicta] Length = 426 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 151/339 (44%), Gaps = 28/339 (8%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKNGL 74 N + + +L + + P++Y WE Y A + W EVP+ D W L Sbjct: 94 DFNPELEPLLQEGPNRFVIFPIQYPDIWEMYKKAVASFWTIEEVPLHKLDKKDWDE--KL 151 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 DE+ I L FFA+S+ +V N++ + + E R + Q E +HS + + Sbjct: 152 NSDEKYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYGFQIAIENIHSEMYSLL 211 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + D E FN +P + KA WAL + + + + Sbjct: 212 IETYISDPKEKDFLFNAIETLPCVGKKAKWALNWINH-------------ESATFPERVI 258 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I L + M G+ + I RDE LH +F + H Sbjct: 259 AFAAVEGIFFSGSFAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLIFK-------H 311 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + K + ++++ +A +E + + +P +G+N Y++F+A+R +G E Sbjct: 312 IIQKPSFEHVKSIIMDAVEIEKEFLTQALPVELIGMNCSLMCNYIEFVADRLFVALGFEK 371 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++ +ENPF +M+ I L+ + NFFE +V EY++ ++ Sbjct: 372 VYN-SENPFSFMN-FISLEGKTNFFEKKVGEYKKFGVVE 408 >gi|255079598|ref|XP_002503379.1| predicted protein [Micromonas sp. RCC299] gi|226518645|gb|ACO64637.1| predicted protein [Micromonas sp. RCC299] Length = 335 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 95/344 (27%), Positives = 157/344 (45%), Gaps = 29/344 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ V + +L+ D + P+KYG WE Y A + W EV + DD+ W Sbjct: 3 AESNNNEVAKVAEPLLDPNDDRFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMVHW- 61 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L +DE+ IK L FFA+S+ +V N+ + + PE R + Q E +HS Sbjct: 62 --NKLNNDEKHFIKHILAFFAASDGIVLENLGVRFMGEVQFPEARAFYGFQIAIENIHSE 119 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I + D E F + +P I KA+WA ++ ++ Sbjct: 120 MYSLLIDAYVKDAQEKTYLFQAIQNIPCIAKKADWAFKWIES--------------SADF 165 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++F F I L + M G+ + I RDE LH +F + + I Sbjct: 166 AERLIAFACIEGIFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLYSYIN 225 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 K + R ++ EA +E + + +P VG+NA +Y++F+A+ Q Sbjct: 226 K-------KPNESVVRQIVKEAVEIEKEFVCDALPCALVGMNADLMSEYIEFVADHLLGQ 278 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +G+ + NPF WM E+I L+ + NFFE RV EYQ+ + Sbjct: 279 LGMSKEYNAA-NPFDWM-ELISLQGKTNFFEKRVGEYQKSGVMN 320 >gi|313213932|emb|CBY40745.1| unnamed protein product [Oikopleura dioica] Length = 418 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 153/338 (45%), Gaps = 29/338 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + + +L + + P++Y W Y A + W EV + D+ WK L Sbjct: 87 ADFDPQLEPLLKENNQRFVIFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWK---KL 143 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +E+ IK L FFA+S+ +V N+V + PE R + Q E +HS + + Sbjct: 144 KKEEQFFIKHVLAFFAASDGIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKL 203 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I +L D E FN +P+I KA+WAL++ + Sbjct: 204 IENLVHDTKEKMGLFNAIETMPAIKKKADWALKWI--------------GADAPYSVRVI 249 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I L + M G+ + I RDE LH +F + H Sbjct: 250 AFAAVEGIFFSGSFAAIFWLKKRGLMPGVTFSNELISRDEGLHTDFACLMYK-------H 302 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + K Q++ ++ +A +E + + +P +G+N + Y++F+A+R ++ Sbjct: 303 MVQKPSQEQIIAIIRDAVSIEQEFLTDALPVRLIGMNCDLMKTYIEFVADRLLVELDCPK 362 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 ++K ENPF +M E+I L+ + NFFE +V+EY + + Sbjct: 363 IYKV-ENPFDFM-EMISLEGKTNFFEKKVSEYARAGVM 398 >gi|308809930|ref|XP_003082274.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus tauri] gi|116060742|emb|CAL57220.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus tauri] Length = 382 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 88/331 (26%), Positives = 145/331 (43%), Gaps = 29/331 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D L P+K+ WE Y A + W EV + D W++ L ++E+ Sbjct: 63 EPLLRDNPDRFCLFPIKHPRVWEMYKKAEASFWTAEEVDLTYDYKDWQT---LNENEKHF 119 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 + L FFASS+ +V N+ + PE R + Q E +HS + ++ + D Sbjct: 120 VSHVLAFFASSDGIVLENLCSRFMSDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKD 179 Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 ELF VP++ KA+WAL + + V + EG Sbjct: 180 PKKKSELFRAIHTVPTVAMKADWALHWI--------------GSDASFPERLVGFACVEG 225 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE LH +F + ++ + Sbjct: 226 IFFSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYGMLQ-------NPLSE 278 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ +A +E + + + VG+NA Y++F+A+R Q+G LF N Sbjct: 279 ATLHHIVGDAVKIEKEFVCDALSCSLVGMNADMMSTYIEFVADRLLIQLGASKLFNAV-N 337 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 PF WM E+I L+ + NFFE RV +YQ+ + Sbjct: 338 PFDWM-ELISLQGKANFFEHRVDQYQKAGVM 367 >gi|73974202|ref|XP_858105.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible) isoform 4 [Canis familiaris] Length = 374 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 99/365 (27%), Positives = 160/365 (43%), Gaps = 51/365 (13%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E V D++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTNENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWI-------------EDRKSTFG 184 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEI-----------------------AYAHETMPKGF 284 L K +++ R ++ A +E + E +P G Sbjct: 242 ----LVNKPSEERVREIIVNAVEIEQVSREAYMISTSLFLEIATCRSKHEFLTEALPVGL 297 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 +G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV EYQ Sbjct: 298 IGMNCVLMKQYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVAEYQ 355 Query: 345 QGAEL 349 + A + Sbjct: 356 RFAVM 360 >gi|73979723|ref|XP_856346.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain (Ribonucleotide reductase small chain) isoform 3 [Canis familiaris] Length = 381 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 151/348 (43%), Gaps = 43/348 (12%) Query: 8 SPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 P + K + + +++ +L + P++Y W+ Y A + W EV + D+ Sbjct: 59 EPAEPKTKVLAPSAEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI 118 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E Sbjct: 119 QHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMEN 175 Query: 126 VHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +HS + +I + D E FN +P + KA+WAL++ Sbjct: 176 IHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWI-------------GDK 222 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 + + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 223 EATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMF 282 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 HL K +Q+ + ++ A +E + E +P +G+N +QY++F+ Sbjct: 283 K-------HLVHKPSEQRVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVF-- 333 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 334 ------------RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 368 >gi|303278144|ref|XP_003058365.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459525|gb|EEH56820.1| predicted protein [Micromonas pusilla CCMP1545] Length = 338 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 92/326 (28%), Positives = 153/326 (46%), Gaps = 29/326 (8%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 A S+ + P+KYG WE Y A + W EV + DD+ W+ L+DDE+ I L Sbjct: 20 AGSERFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMKHWE---KLSDDEKHFISHIL 76 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL- 145 FFA+S+ +V N+ + + PE R + Q E +HS + +I + D + Sbjct: 77 AFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENIHSEMYSLLIDAYIKDAAQKK 136 Query: 146 --FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 F +P + KA+WAL++ ++ + + + EG++F Sbjct: 137 YLFEAMENIPCVAKKADWALKWIES--------------SATFAERLIAFACIEGIFFSG 182 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 F I L + M G+ + I RDE LH +F + + ++ K R Sbjct: 183 SFCSIYWLKKRGMMPGLTFSNELISRDEGLHRDFACLLYSYLQ-------NKPDVSIVRQ 235 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 ++ EA +E + + +P VG+N +Y++F+A+ Q+GLE + T NPF +M Sbjct: 236 IVCEAVEIEKEFVCDALPVSLVGMNKDLMSEYIEFVADHLLGQLGLEKEYN-TVNPFEFM 294 Query: 324 SEVIDLKKEKNFFETRVTEYQQGAEL 349 E+I L+ + NFFE RV EYQ+ + Sbjct: 295 -ELISLQGKTNFFEKRVGEYQKSGVM 319 >gi|39977011|ref|XP_369893.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15] gi|145016179|gb|EDK00669.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15] Length = 403 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 154/345 (44%), Gaps = 36/345 (10%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P A + D+ +L W+ Y A + W E+ + DL Sbjct: 60 KPAVAPTIKAFEMDEPILQENPQRF---------VWQMYKKAEASFWTAEEIDLSKDLHD 110 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W N LTDDE+ I L FFA+S+ +V N+V + PE R + Q E +H Sbjct: 111 WN--NKLTDDEKYFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGFQIMMENIH 168 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S T+ +I + + + FN +P I KA+WAL++ + Sbjct: 169 SETYSLLIDTYIKETAQRTYLFNAIDTIPCIRKKADWALRWI-------------TDKKS 215 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + V EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 216 TFATRLIAFAVVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSL 275 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 L + ++ + ++ +A +E + E +P +G+NA +QY++F+A+R Sbjct: 276 -------LNNRPNKEVVKEIVVDAVKIEQEFLTEALPCALLGMNANLMKQYIEFVADRLL 328 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G E +++ T NPF +M E I L + NFFE RV EYQ+ + Sbjct: 329 VALGNEKVYRAT-NPFDFM-ENISLGGKTNFFEKRVGEYQKAGVM 371 >gi|313235850|emb|CBY19835.1| unnamed protein product [Oikopleura dioica] Length = 382 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 153/338 (45%), Gaps = 29/338 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + + +L + + P++Y W Y A + W EV + D+ WK L Sbjct: 51 ADFDPQLEPLLKENNQRFVIFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWK---KL 107 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +E+ IK L FFA+S+ +V N+V + PE R + Q E +HS + + Sbjct: 108 KKEEQFFIKHVLAFFAASDGIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKL 167 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I +L D E FN +P+I KA+WAL++ + Sbjct: 168 IENLVHDTKEKMGLFNAIETMPAIKKKADWALKWI--------------GADAPYSVRVI 213 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I L + M G+ + I RDE LH +F + H Sbjct: 214 AFAAVEGIFFSGSFAAIFWLKKRGLMPGVTFSNELISRDEGLHTDFACLMYK-------H 266 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + K Q++ ++ +A +E + + +P +G+N + Y++F+A+R ++ Sbjct: 267 MVQKPSQEQIIAIIRDAVSIEQEFLTDALPVRLIGMNCDLMKTYIEFVADRLLVELDCPK 326 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 ++K ENPF +M E+I L+ + NFFE +V+EY + + Sbjct: 327 IYKV-ENPFDFM-EMISLEGKTNFFEKKVSEYARAGVM 362 >gi|307192386|gb|EFN75622.1| Ribonucleoside-diphosphate reductase subunit M2 [Harpegnathos saltator] Length = 344 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 89/341 (26%), Positives = 156/341 (45%), Gaps = 28/341 (8%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKN 72 ++ N D + +L + + P++Y W+ Y A + W EVP+ D W+ Sbjct: 10 KEEFNPDLEPLLQEEPNRFVIFPIRYPDIWDMYKKAVASFWTIEEVPLHKLDKKDWEE-- 67 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L DER I L FFA+S+ +V N++ + + E R + Q E +HS + Sbjct: 68 KLNSDERYFISHVLAFFAASDGIVNENLIERFCQEVKISEARCFYGFQIAIENIHSEMYS 127 Query: 133 YIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 +I + D E FN +P +T KANWAL + + + Sbjct: 128 LLIETYISDLKEKDFLFNAIETLPCVTKKANWALNWINH-------------ESATFPER 174 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 175 IVAFAAVEGIFFSGSFAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFK------ 228 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 H+ K ++ +T++ +A +E + + +P +G+N Y++F+A+R +G Sbjct: 229 -HVIQKPSFERVKTIIMDAVEIEKEFLTQALPVKLIGMNCTLMCTYIEFVADRLFVALGF 287 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + ++ +ENPF +M I L+ + NFFE +V EY++ ++ Sbjct: 288 DKVYN-SENPFSFMD-FISLEGKTNFFEKKVGEYKKFGVME 326 >gi|146298285|ref|YP_001192876.1| ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae UW101] gi|146152703|gb|ABQ03557.1| Ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae UW101] Length = 325 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 92/334 (27%), Positives = 158/334 (47%), Gaps = 28/334 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P+K+ WE Y + W E+ + DL W N L DDER Sbjct: 5 EPILQENKNRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWN--NKLNDDERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E FN P+I K WAL++ ++ + + + + EG Sbjct: 123 EAEKTELFNALEVFPAIAKKGEWALKWIES---------------DSFAERLIAFAAVEG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + N HL K + Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHL------HNHHLVNKVPK 221 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ + ++ +A +E + E++P +G+NA QY++F+A+R ++G E ++ + N Sbjct: 222 ERIKEIIVDALDIERQFVTESLPVSLIGMNAGLMTQYLEFVADRLLVELGCERVYG-SAN 280 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PF +M +I L+ + NFFE RV EYQ+ + D Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVAEYQKSGVMNTD 313 >gi|68485781|ref|XP_713171.1| hypothetical protein CaO19.9424 [Candida albicans SC5314] gi|68485874|ref|XP_713125.1| hypothetical protein CaO19.1868 [Candida albicans SC5314] gi|46434604|gb|EAK94008.1| hypothetical protein CaO19.1868 [Candida albicans SC5314] gi|46434651|gb|EAK94054.1| hypothetical protein CaO19.9424 [Candida albicans SC5314] gi|238883648|gb|EEQ47286.1| ribonucleoside-diphosphate reductase small chain 1 [Candida albicans WO-1] Length = 394 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 155/338 (45%), Gaps = 27/338 (7%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + ++ +L + + P+KY W+ Y + + W E+ + DL W N + Sbjct: 65 KQEESNEPLLTPDKTRHTIYPIKYPELWQFYKKSLASFWTAEELDLSKDLDDWN--NKMN 122 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ++ER I R L FFA+S+ +V N+V + PE + Q E +HS T+ +I Sbjct: 123 ENERFFISRVLAFFAASDGIVNENLVENFCAEVQIPEAKSVYKFQIMMENIHSETYSLLI 182 Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 + D E FN +P I KA+WA+++ Q+ + + V Sbjct: 183 ETYFKDPEEADFLFNAIDNIPFIRKKADWAIRWIQS-------------EDALYAERLVA 229 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++F FA I L + M G+ + I RDE +H ++ + + +K Sbjct: 230 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLK------ 283 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 K + ++ EA +E Y + +P +G+N QY++F+A+R G + Sbjct: 284 -NKPSSEIIEKIITEAVDIEKEYFSDALPVSLLGMNCDLMCQYVEFVADRLLVAFGNKKY 342 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + T NPF +M E I L + NFFE RV++YQ+ ++ Sbjct: 343 YNVT-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVME 378 >gi|46446983|ref|YP_008348.1| ribonucleoside-diphosphate reductase small chain [Candidatus Protochlamydia amoebophila UWE25] gi|46400624|emb|CAF24073.1| probable ribonucleoside-diphosphate reductase small chain [Candidatus Protochlamydia amoebophila UWE25] Length = 323 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 150/332 (45%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D L P+ + W+ Y A + W E+ + DL W L +DE+ Sbjct: 5 EPILRENKDRFVLFPINHAEIWQMYKKAEASFWTAEEIDLTSDLLDW--DRKLNNDEKYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + + PE R + Q E +HS + +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAVNFMSEVQYPEARCFYGFQIMMENIHSEAYSLLIDTYIKD 122 Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 LF +P I+ KA+WAL++ Q + V + EG Sbjct: 123 PTDKNRLFKALETIPCISNKADWALRWI---------------SQGSFSERLVAFAAVEG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G++ + I RDE LH +F + +Q+ + P Sbjct: 168 IFFSGSFCSIFWLKKRGLMPGLSFANELISRDEGLHCDFACLLYSQLNNKLPL------- 220 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + + ++ A +E + + +P +G+NA QY++F+A+R +G L+ N Sbjct: 221 ETLQAIISHAVAIEKEFVQDALPVRLIGMNATLMCQYIEFVADRLLVALGSPKLYNVD-N 279 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M +I + + NFFE RV+EYQ+ + Sbjct: 280 PFDFMD-LISMPGKTNFFERRVSEYQKSGVMS 310 >gi|226294144|gb|EEH49564.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides brasiliensis Pb18] Length = 325 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 87/313 (27%), Positives = 143/313 (45%), Gaps = 27/313 (8%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 W+ Y A + W EV + DL W N L DDER I L FFA+S+ +V N Sbjct: 9 KQIWQMYKKAEASFWTAEEVDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNEN 66 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSIT 156 +V + PE R + Q E +HS T+ +I + + + F+ +P I Sbjct: 67 LVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIR 126 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 KA+WA+++ + + V + EG++F FA I L + Sbjct: 127 KKADWAIRWI-------------EDKESTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGL 173 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 M G+ + I RDE LH +F + + HL + + + ++ EA +E + Sbjct: 174 MPGLTFSNELISRDEGLHTDFACLLFS-------HLRHRPSPEAVQKIITEAVAIEQEFL 226 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336 + +P +G+NA QY++F+A+R +G + ++ T NPF +M I L + NFF Sbjct: 227 TDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLTGKTNFF 284 Query: 337 ETRVTEYQQGAEL 349 E RV +YQ+ + Sbjct: 285 EKRVGDYQKAGVM 297 >gi|284039889|ref|YP_003389819.1| ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74] gi|283819182|gb|ADB41020.1| Ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74] Length = 349 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 87/332 (26%), Positives = 146/332 (43%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L L P+K+ WE Y + + W E+ + D+ W N L D ER Sbjct: 8 EPILEEDKGRFVLFPIKHWDIWEYYKTHEASFWTAEEIDLGQDMKDW---NSLNDGERHF 64 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + + E + + Q E +HS T+ +I + D Sbjct: 65 ISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFYGFQVMMENIHSETYSLLIDTYIKD 124 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E N +P + KA WAL++ D + + + V EG Sbjct: 125 PVEKDRLLNAIDTIPCVQKKAEWALRWI---------------DNGSFAERLIAFAVVEG 169 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE LH +F + H+ K + Sbjct: 170 IFFSGSFCSIYWLKKRGMMPGLTFSNELISRDEGLHRDFACMLY------TDHIVNKLPE 223 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + ++ A +E + + +P +G+NA +QY+ F+A+ +GL ++ N Sbjct: 224 SQIYDIIRNAVEIEQEFVADALPVSLIGMNAELMKQYIAFVADHLLVTLGLRKMYNVA-N 282 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M +I L+ + NFFE RV EYQ+G + Sbjct: 283 PFDFMD-MISLQGKTNFFEKRVGEYQRGEVMS 313 >gi|15826569|pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer Length = 419 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 102/333 (30%), Positives = 156/333 (46%), Gaps = 27/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 95 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 152 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 153 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 212 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WAL++ Q DAD F + L F E Sbjct: 213 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 259 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 260 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 312 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K E Sbjct: 313 PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-E 371 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 372 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 403 >gi|66822029|ref|XP_644369.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] gi|66823381|ref|XP_645045.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] gi|41019487|sp|P42521|RIR2_DICDI RecName: Full=Ribonucleoside-diphosphate reductase small subunit; AltName: Full=Ribonucleotide reductase small subunit gi|29611978|gb|AAB72227.2| ribonucleotide reductase small subunit [Dictyostelium discoideum] gi|60472492|gb|EAL70444.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] gi|60472997|gb|EAL70945.1| ribonucleotide reductase small subunit [Dictyostelium discoideum AX4] Length = 338 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 95/330 (28%), Positives = 155/330 (46%), Gaps = 28/330 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D L P+KY W Y A +HW+ E+ + +D W+ LTD+ER Sbjct: 12 EPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWEY--KLTDNERHF 69 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + D Sbjct: 70 ISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIETYIKD 129 Query: 142 ---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + +LFN +P I KA WAL++ D + + V + EG Sbjct: 130 KQTKDKLFNAIETIPCIKKKAEWALRWIN--------------DSDSFAERLVAFAAVEG 175 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE LH +F + +++ K Sbjct: 176 IFFSGSFCSIFWLKKRGLMQGLTFSNELISRDEGLHCDFACLLYTKLQR-------KLDP 228 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + M+ +A E + E++P +G+N+ S QY++F A+R +G + +F + N Sbjct: 229 KVIEKMIRDAVECEKEFICESLPVDLIGMNSRSMSQYIEFCADRLVVSLGYKKIFN-SSN 287 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 PF WM E+I L+++ NFFE +V EY + Sbjct: 288 PFEWM-EMISLQRKSNFFEGKVAEYAKTGV 316 >gi|187903099|ref|YP_001883390.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca domestica salivary gland hypertrophy virus] gi|187384748|gb|ACD03521.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca domestica salivary gland hypertrophy virus] Length = 343 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 156/338 (46%), Gaps = 27/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 A + ++ ++ +L L P++Y W Y A + W EV + D+ W+ Sbjct: 6 AANQIEMDTSNEPLLQENPRRFVLFPIEYEDIWRMYKKAEASFWTVEEVDLSKDMNDWE- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L+ E+ IK L FFA+S+ +V N++ + + E R + Q E VHS Sbjct: 65 --RLSSGEQHFIKHVLAFFAASDGIVNENLLERFAQEVQVSEARCFYGFQIAMENVHSEM 122 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + + E FN +P++ KA+WA + + Sbjct: 123 YSVLIDTYIRERAERERLFNAIETIPAVKRKADWAFNWI-------------TSTTATFG 169 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + + V EG++F FA I L + M G+ + I RDE +H +F + + + Sbjct: 170 ERLLAFAVVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVLLFKRY-- 227 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L + +++ ++ EA +E + + +P +G+N QY++F+A+R + Sbjct: 228 ----LVNRPSEERVGEIVREAVTIEQEFLTDALPVSLIGMNCGLMSQYIEFVADRLLVDL 283 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 G++ ++ T+NPF +M +I L + NFFE RV +YQ+ Sbjct: 284 GMKRIYN-TKNPFDFMD-MISLDGKTNFFEKRVGDYQR 319 >gi|225012154|ref|ZP_03702591.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-2A] gi|225003709|gb|EEG41682.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-2A] Length = 325 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 155/332 (46%), Gaps = 28/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P+K+ WE Y + W E+ + DL W + LT+DE+ Sbjct: 5 EPILQENENRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNT--KLTEDEKYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E F P+I KA+WAL++ D + + + + EG Sbjct: 123 DVEKDRLFKAIEVFPAIKKKADWALRWI---------------DSDSFAERLIAFAAVEG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + N HL K Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHL------HNHHLVNKVPP 221 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + + +L +A +E + E++P +G+NA QY++F+ +R ++GLE F T N Sbjct: 222 ARIKEILLDALTIEREFITESLPISLIGMNAKLMTQYLEFVTDRLLQELGLEKEFNVT-N 280 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M +I L+ + NFFE RV EYQ+ L Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGEYQKAGVLN 311 >gi|292397811|ref|YP_003517877.1| RR2b [Lymantria xylina MNPV] gi|291065528|gb|ADD73846.1| RR2b [Lymantria xylina MNPV] Length = 338 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 92/346 (26%), Positives = 152/346 (43%), Gaps = 29/346 (8%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L+P GEK + + +L + P++Y W Y A + W EV + D Sbjct: 6 LAPAD-GEKPFDPQAEPLLRENPRRFVIFPIQYSDMWSMYKKAEASFWTVEEVDLSKDTR 64 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ L D+ER IK L FFA+S+ +V N+V + + E R + Q E V Sbjct: 65 DWE---RLNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVVEARCFYGFQIAMENV 121 Query: 127 HSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 HS + +I + E N +P + KA WAL++ + + Sbjct: 122 HSEMYSTLIDTYVRSSEEKLRLLNAIETMPCVKEKAEWALRWIAS-------------KE 168 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 169 ATFGERLVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK 228 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 HL + + R ++ +A +E + E +P +GLN + QY++F+A+R Sbjct: 229 -------HLVQRPSAARVREIVTDAVAIEQRFLTEALPVRLLGLNCETMSQYIEFVADRL 281 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 + + T NP +M+ +I L+ + NFFE +V EYQ+ + Sbjct: 282 LVDLIGTKHYN-TANPLDFMT-LISLEGKTNFFEKKVGEYQKFGVM 325 >gi|295670491|ref|XP_002795793.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides brasiliensis Pb01] gi|226284878|gb|EEH40444.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides brasiliensis Pb01] Length = 325 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 86/313 (27%), Positives = 143/313 (45%), Gaps = 27/313 (8%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 W+ Y A + W E+ + DL W N L DDER I L FFA+S+ +V N Sbjct: 9 KQIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNEN 66 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSIT 156 +V + PE R + Q E +HS T+ +I + + + F+ +P I Sbjct: 67 LVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIR 126 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 KA+WA+++ + + V + EG++F FA I L + Sbjct: 127 KKADWAIRWI-------------EDKESTFAQRLVAFAAVEGIFFSGSFASIFWLKKRGL 173 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 M G+ + I RDE LH +F + + HL + + + ++ EA +E + Sbjct: 174 MPGLTFSNELISRDEGLHTDFACLLFS-------HLRHRPSPEAVQKIITEAVAIEQEFL 226 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336 + +P +G+NA QY++F+A+R +G + ++ T NPF +M I L + NFF Sbjct: 227 TDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKVYNST-NPFDFMDN-ISLTGKTNFF 284 Query: 337 ETRVTEYQQGAEL 349 E RV +YQ+ + Sbjct: 285 EKRVGDYQKAGVM 297 >gi|74025554|ref|XP_829343.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] gi|70834729|gb|EAN80231.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma brucei] Length = 337 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L D + P+KY W+KY A +N W + + +D+ W+ L D ER Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKKARSNFWAMENIYLGNDMTDWE---KLDDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+ + +V N V + PE R + Q E +HS T+ +I + + Sbjct: 73 FIKHVLAFFAARDGIVLENFVQRFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E + R +P I KA WA+++ Q V + E Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWI--------------GSQTSFPTRLVAFAAVE 178 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE LH +F + ++ K Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------EKYIVNKLP 232 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++ Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M +I L+ + NFFE +V EYQ+ + Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323 >gi|213402763|ref|XP_002172154.1| ribonucleoside-diphosphate reductase small chain [Schizosaccharomyces japonicus yFS275] gi|212000201|gb|EEB05861.1| ribonucleoside-diphosphate reductase small chain [Schizosaccharomyces japonicus yFS275] Length = 392 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 90/338 (26%), Positives = 151/338 (44%), Gaps = 27/338 (7%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K+ + D+ +L + P++Y W+ Y A + W E+ + DL W N L Sbjct: 61 KKEDEKDEVVLTPNPRRFVMFPIEYHDIWQFYKKAEASFWTAEEIDLSKDLHDW--DNKL 118 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 DER I L +FA+S+ +V N++ + E R Q E +HS T+ + Sbjct: 119 NKDERYFISTVLAYFAASDGIVNENLLSRFSSEVQIAEARCVYGFQIMIENIHSETYSLL 178 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 + + D E F+ + SI AKA WAL++ + + V Sbjct: 179 LDTYIRDPYEKQRHFDAILTMGSIKAKAKWALRWI-------------EDPESIYAVRLV 225 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG++F FA I L + M G+ + I RDE +H +F + + H Sbjct: 226 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGVHTDFACLMFS-------H 278 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L + ++ ++ EA +E Y + +P +G+N QY++F+A+R +G E Sbjct: 279 LKHRPGKKVVERIIIEAVNIEKEYFTDALPVYLLGMNCDLMCQYIEFVADRLLLSLGNEK 338 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 + T NPF +M E I L + NFFE +V++YQ + Sbjct: 339 YYNVT-NPFDFM-ENISLAGKTNFFEKKVSDYQIAGVM 374 >gi|302536805|ref|ZP_07289147.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp. C] gi|302445700|gb|EFL17516.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp. C] Length = 356 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 103/322 (31%), Positives = 174/322 (54%), Gaps = 9/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A LT E+ MI R + FFA+ + Sbjct: 36 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTPAEQHMIGRLVAFFATGD 92 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F+ Sbjct: 93 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVE 152 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E+PSI KA + ++ ++ T + FL +L F EG++FY FA + Sbjct: 153 EIPSIREKAQFCFKWMDSVEKIERLE-TAADRRRFLLNLICFAACIEGLFFYGAFAYVYW 211 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML EA Sbjct: 212 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKEAVE 271 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ + + G G+N S +Y++ +A++R ++G P++ ++NPF +M E+ ++ Sbjct: 272 AELQFGRDLCGDGLPGMNTDSMREYLECVADQRLVRLGFPPVYG-SQNPFSFM-ELQGVQ 329 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE R + YQ E D Sbjct: 330 ELTNFFERRPSAYQVAVEGTVD 351 >gi|163753569|ref|ZP_02160692.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia algicida OT-1] gi|161325783|gb|EDP97109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia algicida OT-1] Length = 326 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 28/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+K+ WE Y + + W E+ + DL W + L DDER Sbjct: 6 EPILQENKDRFVIFPIKHADIWEWYKKSEASFWTAEEIDLHQDLTDWTT--KLNDDERYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F P+I KA+WALQ+ ++ + + + EG Sbjct: 124 EAEKDKLFKAIENFPAIKKKADWALQWIES---------------PSFAERLIAFAAVEG 168 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + N HL K + Sbjct: 169 IFFSGAFCSIYWLKKRGIMPGLTFSNELISRDEGVHCDFAVHL------HNNHLVNKVPK 222 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ R ++ +A +E + E++P +G+NA QY++F+ +R ++G E + + N Sbjct: 223 ERIRAIIVDALNIEREFITESLPVSLIGMNAKLMTQYLEFVTDRLLQELGCEKEYNVS-N 281 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M +I L+ + NFFE RV+EYQ+ L Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVSEYQKAGVLN 312 >gi|219110949|ref|XP_002177226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411761|gb|EEC51689.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 409 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 92/328 (28%), Positives = 147/328 (44%), Gaps = 31/328 (9%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+++ W Y + W E+ + DL W + L D+ER I L FFA Sbjct: 93 RFSLFPIEHDDLWGMYKQHVASFWTVDEIDLSADLTDWHER--LNDNERHFISMVLAFFA 150 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147 ++ +V N+ R ++ PE R + Q E +H T+ +I S D + F Sbjct: 151 GADGIVVENLAERFCREVTVPEARAFYGFQMAMEGIHQETYCLLIDSYISDPKDREMLFA 210 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +VPS+ KA WA +Y + V + EG++F F Sbjct: 211 AHTKVPSVEKKARWAQRYI--------------GSDASFAERLVAFAAVEGIFFSGAFCS 256 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 I L + M G+ + I RDE LH +F + ++ L K + ++ E Sbjct: 257 IFWLKKRGLMPGLTFSNELISRDEGLHCSFACQLYSK-------LERKLSETDMHKLIGE 309 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A +E + + +P G +G+NA QY++F+A+R H +G L+ ++NPF WM +I Sbjct: 310 AVEVEKGFVCDALPVGLIGMNASLMSQYVEFVADRLLHDLGYRTLYG-SKNPFDWMD-MI 367 Query: 328 DLKKEKNFFETRVTEYQQGA---ELKWD 352 L+ + NFFE RV EYQ+ L D Sbjct: 368 SLEGKTNFFEKRVGEYQKSGVMASLSDD 395 >gi|145352915|ref|XP_001420779.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581014|gb|ABO99072.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 346 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 88/331 (26%), Positives = 147/331 (44%), Gaps = 29/331 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D L P+K+ WE Y A + W EV + D W + L D+E+ Sbjct: 27 EPLLRDNPDRFCLFPIKHAKVWEMYKKAEASFWTAEEVDLTYDYRDWIT---LNDNEQHF 83 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + PE R + Q E +HS + ++ + D Sbjct: 84 ISHVLAFFAASDGIVLENLCSRFMTDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKD 143 Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 +LF VP++ KA+WAL++ + V + EG Sbjct: 144 PKKKSDLFRAIHTVPTVAKKADWALKWI--------------GSDASFAERLVGFACVEG 189 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE LH +F + + L + Sbjct: 190 IFFSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSM-------LENPLSE 242 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + ++ +A +E + + + VG+NA Y++F+A+R Q+G+ L+ N Sbjct: 243 KVLHQLVGDAVTIEKEFVCDALSCSLVGMNANMMSTYIEFVADRLLLQLGVSKLYNAV-N 301 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 PF WM E+I L+ + NFFE RV +YQ+ + Sbjct: 302 PFDWM-ELISLQGKANFFEHRVDQYQKAGVM 331 >gi|156847978|ref|XP_001646872.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM 70294] gi|156117553|gb|EDO19014.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM 70294] Length = 400 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 98/343 (28%), Positives = 156/343 (45%), Gaps = 27/343 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 +Q E + ++ +L A + L P++Y +E Y A + W E+ + DL W Sbjct: 63 VQRHELKEKETEEPLLVADPNRKILFPIQYPDIYEAYKRAEASFWTAEEIDLSKDLHDWN 122 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N + ++ER I R L FFA+S+ +V N+ E + + Q E +HS Sbjct: 123 --NRMNENERFFISRVLAFFAASDGIVNENLTENFSVEAQILEAKCFYGFQIMIENIHSE 180 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 T+ +I + D E FN +P I KA WAL++ + Sbjct: 181 TYSLLIDTYIKDPKESQYLFNAIETIPQIKEKAEWALRWIND-------------SEALF 227 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V + EG++F FA I L + M G+ + I RDE LH +F + + IK Sbjct: 228 AERLVAFAAIEGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHIK 287 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 K ++ EA +E Y + +P +G+NA QY++F+A+R Sbjct: 288 -------NKPDPAIVEKIVTEAVEIEKRYFTDALPVALLGMNADLMNQYVEFVADRLLVA 340 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 G E +FK ENPF +M E I L + NFFE RV++YQ+ + + Sbjct: 341 FGNEKVFKV-ENPFDFM-ENISLAGKTNFFEKRVSDYQKASVI 381 >gi|150024561|ref|YP_001295387.1| ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium psychrophilum JIP02/86] gi|149771102|emb|CAL42569.1| Ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium psychrophilum JIP02/86] Length = 325 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 94/334 (28%), Positives = 163/334 (48%), Gaps = 28/334 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P+K+ WE Y S + W E+ + DL W N L++DER Sbjct: 5 EPILQENKNRFVIFPIKHHDIWEFYKSMEASFWTAEEIDLSQDLNDWN--NKLSNDERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 +K L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 VKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E ELFN P+I KA+WALQ+ ++ + + + + EG Sbjct: 123 EVEKDELFNALEVFPAIKKKADWALQWIES---------------DSFAERLIAFAAVEG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + N HL K + Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHL------HNHHLVNKVPK 221 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ R+++ +A +E + E++P +G+NA QY++F+A+R ++G + + T N Sbjct: 222 ERIRSIIVDALNIEREFITESLPVSLIGMNAVLMTQYLEFVADRLLVELGCDREYN-TAN 280 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PF +M +I L+ + NFFE +V EYQ+ + D Sbjct: 281 PFDFMD-MISLQGKTNFFEKKVAEYQKAGVMNTD 313 >gi|18640102|ref|NP_570176.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus] gi|18448509|gb|AAL69755.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus] Length = 320 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 89/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P+KY W+ Y + + W EV + DL W + LT DE+ Sbjct: 2 EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFASS+ +V N+ Y + E R + Q E +HS + +I + D Sbjct: 59 IKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN + + KA+WA ++ + + + V + EG Sbjct: 119 NIEKMHLFNAIETMECVKKKADWARKWI--------------SSNKVYGERVVAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I + + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSK 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + +++ +A +E + +P +G+N QY++F+A+R ++G E +F N Sbjct: 218 EVITSIIIDAVNIEKEFLTVAIPVDLIGMNCCLMSQYIEFVADRLLTELGCEKVFNVY-N 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV+EYQ+ Sbjct: 277 PFSFM-EYISLEGKTNFFERRVSEYQKMGVFT 307 >gi|301166951|emb|CBW26530.1| putative ribonucleoside-diphosphate reductase small chain subunit [Bacteriovorax marinus SJ] Length = 322 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 95/332 (28%), Positives = 155/332 (46%), Gaps = 27/332 (8%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +L D L PLKY +E Y + W E+ D+ W+ L DE+ I Sbjct: 3 PILAPNDDRFVLFPLKYHSIFEMYKNHMAVFWTADELDFASDITDWE---KLNKDEQHFI 59 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 K L FFA+S+ +V N+ L Y + PE R + Q E +HS T+ +I + D Sbjct: 60 KHILAFFAASDGIVNENLALRFYNDVQIPEARCFYGFQIAMENIHSETYSLLIDTYVKDP 119 Query: 143 ---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 ELF+ P + KA+WA+++ Q+ + + + + EG+ Sbjct: 120 KEKDELFHAVTHFPFVEKKADWAMKWMQS--------------KRSFAERLIAFAAIEGI 165 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 +F F I L + M G+ ++I RDE LH F + + E + ++ Sbjct: 166 FFSGSFCSIYWLKKRGLMPGLCTSNEFISRDEGLHCEFACHIHELLTPEE-----QLNKE 220 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319 ++ EA +E + E +P +G+NA +Y++F+A+ +++G E + TENP Sbjct: 221 TITQIITEAVSIEKEFITEAIPVSLIGMNADMMSRYIEFVADYWLNRLGCEKAYN-TENP 279 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 F WM E+I L+ + NFFE RV+EYQ+ L Sbjct: 280 FDWM-ELISLEGKTNFFEKRVSEYQKPGVLGD 310 >gi|94986920|ref|YP_594853.1| ribonucleotide reductase, beta subunit [Lawsonia intracellularis PHE/MN1-00] gi|94731169|emb|CAJ54531.1| Ribonucleotide reductase, beta subunit [Lawsonia intracellularis PHE/MN1-00] Length = 333 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 139/337 (41%), Positives = 192/337 (56%), Gaps = 5/337 (1%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 VN DKR++N ++D+NQLLP +Y WAW+ +L A NHW P E+ M D+ + + LT Sbjct: 2 PVNASDKRIVNGKTDINQLLPFRYPWAWDFFLKANQNHWTPLEISMSQDVYDYN--HTLT 59 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +ER + L + +S+ L NI LA+ ++ PE + Y RQ +EEA+H+ T+Q+ I Sbjct: 60 TNERHVFDNVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHCI 119 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 SLGL++ E++N YR VP I K + + + + KD EF+ F + Sbjct: 120 ESLGLEQSEIYNRYRVVPEIYGKILLSNKRLEQVLRSDINLSDKDNLHEFIMSYIFFAAI 179 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 FEG WFY GF+ I SL R M G AEQ+QYI+RDE LH FGI VI + E Sbjct: 180 FEGCWFYNGFSPIFSLQRRGLMKGTAEQFQYILRDEVLHCTFGITVIKGLIEEENITLDP 239 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 R + E EIAYA+ + + +G NA +FIANRR Q+G++ F Sbjct: 240 ---TAVRQLWDEVEAAEIAYANYILHEPIIGYNADLHIGQFRFIANRRSRQLGMKEPFPG 296 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +N PW+ E +L+KEKNFFETRVTEYQ G LKWD Sbjct: 297 AKNVLPWLDEQSNLRKEKNFFETRVTEYQTGGGLKWD 333 >gi|9633651|ref|NP_051729.1| ribonucleotide reductase, small subunit [Myxoma virus] gi|6523870|gb|AAF14903.1|AF170726_19 ribonucleotide reductase, small subunit [Myxoma virus] gi|301134541|gb|ADK63655.1| M015L [Myxoma virus] Length = 322 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 94/334 (28%), Positives = 157/334 (47%), Gaps = 28/334 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++D+ +L D + P++Y W Y A + W P EV + DL W+ LT DE Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWR---VLTPDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 +D E F + I KA W ++ ++ D + + L F Sbjct: 118 IIDLQEKEKLFKAIETMDCIKQKAEWVQKWI------------RNKDATYAERLIAF-AS 164 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + KM G+ + I RDE LH +F + +K Sbjct: 165 VEGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFKHLKHT------- 217 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +++ +++ EA ++E + E +P +G+N QY++F+A+R ++G +F Sbjct: 218 PSEERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSA 277 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 T NPF +M E I L+ + NFFE RV++YQ+ + Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQRMGVV 309 >gi|126662515|ref|ZP_01733514.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria bacterium BAL38] gi|126625894|gb|EAZ96583.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria bacterium BAL38] Length = 325 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 89/334 (26%), Positives = 157/334 (47%), Gaps = 28/334 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+K+ WE Y W E+ + DL W N L DDE+ Sbjct: 5 EPILQENKDRFVIFPIKHQDIWEWYKKQEACIWTAEEIDLHTDLNDWN--NKLNDDEKYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + PE + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYPEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F+ P+I KA WAL++ ++ + + + + EG Sbjct: 123 EVEKNKLFHAIETFPAIKEKAQWALKWIES---------------DSFAERLIAFAAVEG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + + H+ K + Sbjct: 168 IFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLHSH------HIVNKVPK 221 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ ++ +A +E + E++P +G+NA QY++F+ +R ++G + ++ + N Sbjct: 222 ERITEIIVDALNIERQFITESLPVSLIGMNATLMTQYLEFVTDRLLVELGCDRVYN-SSN 280 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PF +M +I L+ + NFFE RV EYQ+ + D Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVAEYQKAGVMNSD 313 >gi|297157411|gb|ADI07123.1| ribonucleoside-diphosphate reductase [Streptomyces bingchenggensis BCW-1] Length = 340 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 105/324 (32%), Positives = 178/324 (54%), Gaps = 11/324 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +++Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 20 LRPMRYPDFYDRYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHLIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 136 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ TKD + FL +L F EG++FY FA + Sbjct: 137 NIPSIREKAEFCFRWIDSVDKIDRLE-TKDERRRFLLNLICFAACIEGLFFYGAFAYVYW 195 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H+NF V++ ++ E P L+ E QQ+ ML EA Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMNFAFQVVDTVREEEPELFDDELQQQVTDMLREAVE 255 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + +G G+N S QY++ +A++R ++G P++ +ENPF +M E+ +++ Sbjct: 256 AELQFARDLCGEGLPGMNTESMRQYLECVADQRLARLGFAPVYG-SENPFSFM-ELQNVQ 313 Query: 331 KEKNFFETRVTEYQQG--AELKWD 352 + NFFE R + YQ + +D Sbjct: 314 ELTNFFERRASAYQVAVEGSVSFD 337 >gi|86134368|ref|ZP_01052950.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp. MED152] gi|85821231|gb|EAQ42378.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp. MED152] Length = 323 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 89/331 (26%), Positives = 156/331 (47%), Gaps = 28/331 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +L + + P+++ WE Y W E+ + DL W + LTDDER Sbjct: 4 QEPILQPNDNRFVIFPIQHNDLWEWYKKQQACFWTAEEIDLHSDLVDWTT--KLTDDERY 61 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + Sbjct: 62 FIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVK 121 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 DE E F P+I KA+WAL++ ++ E + + + E Sbjct: 122 DEVEKDRLFRAIEVFPAIKKKADWALKWIES---------------ESFAERLIAFAAVE 166 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + + G+ + I RDE +H +F + + N H+ + Sbjct: 167 GIFFSGAFCSIFWLKKRGLLPGLTFSNELISRDEGMHCDFAVHL------HNNHIVNRVP 220 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + + ++ +A +E + E++P +G+NA QY++F+ +R + G E ++ T Sbjct: 221 KDRIKEIIVDALDIEREFVTESLPVSLIGMNAKLMTQYLEFVTDRLLLEFGCEKVYDVT- 279 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 NPF +M E+I L+ + NFFE RV+EYQ+ Sbjct: 280 NPFDFM-EMISLEGKTNFFEKRVSEYQKAGV 309 >gi|323452425|gb|EGB08299.1| hypothetical protein AURANDRAFT_59025 [Aureococcus anophagefferens] Length = 319 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 87/326 (26%), Positives = 150/326 (46%), Gaps = 27/326 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 ML S L P+++ W+ Y A + W EV + D+ W + L D ER IK Sbjct: 1 MLAVNSLRFVLFPIEHDDIWQMYKQAEASFWTAEEVDLCHDVQHWDT--KLNDKERHFIK 58 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ + PE R + Q E +HS + +I + D Sbjct: 59 HVLAFFAASDGIVNENLAQNFATEVQWPEARCFYGFQIAIENIHSEVYSLLIDTYIRDAQ 118 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E +P + KA WAL++ D D + + + EG++ Sbjct: 119 KKHECLTAIDTMPCVAEKAQWALRWC-------------DPDHASFTERLLAFAAVEGIF 165 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F + L + M G++ + I RDE LH +F + ++++ + + + Sbjct: 166 FSGSFCAVFWLKKRGLMPGLSFSNELIARDEGLHCDFACLLYSKLRKKLSDV-------Q 218 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 +++ A +E ++ +P +G+N+ S +Y++F A+R ++G L+ T NPF Sbjct: 219 VASIVGAAVDIEKSFVVSALPVELIGMNSKSMCKYIEFCADRLLLELGYSTLYGAT-NPF 277 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346 WM E+I L+ + NFFE RV EY + Sbjct: 278 DWM-ELISLQGKTNFFEKRVGEYAKA 302 >gi|160942848|ref|ZP_02090088.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii M21/2] gi|158445900|gb|EDP22903.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii M21/2] Length = 347 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ E +V +RM + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPEGDPDVRLRRMTGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +S+ N+ I +++ E L QAF+E V Sbjct: 67 DY---PRLLSAERSAYDKILSFLVFLDSIQTANL-PNIGAYITANEVNLCLSIQAFQECV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ R K + L T + + D L Sbjct: 123 HSQSYSYMLDTICSPVE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++ Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T E Q R M+ E EIA+ H + GLN Y++++ N R Sbjct: 237 KEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 296 Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G L+ E W+S+ D + +FFE R T Y + L D Sbjct: 297 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 346 >gi|324509007|gb|ADY43795.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum] Length = 337 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 95/334 (28%), Positives = 151/334 (45%), Gaps = 28/334 (8%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D+ +L + P+KY W Y +A + W E+ + D A W+ LTD ER Sbjct: 16 SDEPLLAENPSRFVIFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWE---KLTDGER 72 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I R L FFA+S+ +V N+ + PE R + Q E VHS + +I + Sbjct: 73 FFISRVLSFFAASDGIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVHSEMYSKMIEAYI 132 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D E F+ + I KA+WAL++ +SP + + Sbjct: 133 KDPKEQMVHFDAIHQFECIKKKADWALRWIDDRNSP-------------FPVRLIAFAAV 179 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG+ F FA I L + M G+ + I RDE LH +F + IK K Sbjct: 180 EGIMFSGSFAAIFWLKKRGVMKGLTHSNELISRDEGLHRDFACLLYKYIK-------HKP 232 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q++ ++ EA LE Y E +P +G+N QY++++A+ ++G ++ + Sbjct: 233 SQEQVYEIIKEAVSLEQEYLTEALPVDLIGMNCRLMSQYIEYVADHLLTELGYPKVYNAS 292 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E + ++ + NFFE RV+EYQ+ L Sbjct: 293 -NPFDFM-ENLSIEAKTNFFERRVSEYQRAGVLS 324 >gi|313115920|ref|ZP_07801347.1| ribonucleoside-diphosphate reductase, beta subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310621684|gb|EFQ05212.1| ribonucleoside-diphosphate reductase, beta subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 347 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ E +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +S+ N+ I +++ E L QAF+E V Sbjct: 67 DY---PRLLSAERSAYDKILSFLVFLDSIQTANL-PNIGAYITANEVNLCLSIQAFQECV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ R K + L T + + D L Sbjct: 123 HSQSYSYMLDTICSPVE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++ Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T E Q R M+ E EIA+ H + GLN Y++++ N R Sbjct: 237 KEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 296 Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G L+ E W+S+ D + +FFE R T Y + L D Sbjct: 297 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 346 >gi|332519182|ref|ZP_08395649.1| Ribonucleoside-diphosphate reductase [Lacinutrix algicola 5H-3-7-4] gi|332045030|gb|EGI81223.1| Ribonucleoside-diphosphate reductase [Lacinutrix algicola 5H-3-7-4] Length = 327 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 155/332 (46%), Gaps = 28/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+++ WE Y + + W E+ + DL W S LTDDER Sbjct: 6 EPILQENKDRFVIFPIQHHDLWEWYKKSEASMWTAEEIDLHQDLTDWSS--KLTDDERYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 IKHVLAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E FN P+I KA WAL++ ++ + + + EG Sbjct: 124 EKEKAMLFNAIETFPAIKKKAEWALKWIES---------------PSFAERLIAFAAVEG 168 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + HL K + Sbjct: 169 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHL------HEHHLINKVPK 222 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ R +L +A +E + E++P +G+N+ QY++F+ + +G E + T N Sbjct: 223 ERIREILVDALNIEREFITESLPVSLIGMNSKLMSQYLEFVTDGLLQDLGCEKEYG-TAN 281 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M +I L+ + NFFE RV+EYQ+ L Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVSEYQKAGVLN 312 >gi|241951880|ref|XP_002418662.1| ribonucleoside diphosphate reductase, putative [Candida dubliniensis CD36] gi|223642001|emb|CAX43965.1| ribonucleoside diphosphate reductase, putative [Candida dubliniensis CD36] Length = 394 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 90/338 (26%), Positives = 155/338 (45%), Gaps = 27/338 (7%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + ++ +L + + P+KY W+ Y + + W E+ + DLA W N + Sbjct: 65 KQEESNEPLLTKDKTRHTIYPIKYPELWQFYKKSLASFWTAEELDLSKDLADWN--NKMN 122 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ++ER I R L FFA+S+ +V N+V + PE + Q E +HS T+ +I Sbjct: 123 ENERFFISRVLAFFAASDGIVNENLVENFCAEVQIPEAQSVYKFQIMMENIHSETYSLLI 182 Query: 136 TSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 + D E FN +P I KA+WA+++ Q + + V Sbjct: 183 ETYFKDPEEADFLFNAIENIPFIREKADWAIRWIQD-------------EDALYAERLVA 229 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++F FA I L + M G+ + I RDE +H ++ + + +K Sbjct: 230 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLK------ 283 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 K + ++ EA +E Y + +P +G+N QY++F+A+R G + Sbjct: 284 -NKPSPEIIEKIITEAVTIEKKYFSDALPVSLLGMNCDLMCQYVEFVADRLLVAFGNKKY 342 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + T NPF +M E I L + NFFE RV++YQ+ ++ Sbjct: 343 YNVT-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVME 378 >gi|38229183|ref|NP_938276.1| 20L [Yaba monkey tumor virus] gi|38000454|gb|AAR07377.1| 20L [Yaba monkey tumor virus] Length = 325 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 89/337 (26%), Positives = 154/337 (45%), Gaps = 28/337 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 ++V + +L + + P+ Y W Y A + W EV + D W L++ Sbjct: 1 MDVVSEPILRQTTGRYVVFPIVYKDIWMMYKKAVASFWTVEEVDLSKDFPDW---LKLSE 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I Sbjct: 58 NEKKFIKHILAFFAASDGIVNENLAERFYSEVQVSEARCFYGFQIAMENIHSEMYSLLID 117 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + LD E FN + + KANWA ++ ++ + + + Sbjct: 118 TYILDSKEKNYLFNAIENMNCVKQKANWARKWI-------------ESKNSTYGERLIAF 164 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F FA I + + M G+ + I RDE LH +F + HL Sbjct: 165 AAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACMMFK-------HLS 217 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + R ++ EA +E + E MP +G+N +QY++F+A+R ++G + + Sbjct: 218 NPPLENVIRDIVIEAVDIEKNFLTEAMPVKLIGMNCDLMKQYIEFVADRLLLELGCKKYY 277 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++NPF +M E I L+ + NFFE RV+EYQ+ + + Sbjct: 278 -CSKNPFDFM-ENISLEGKTNFFEKRVSEYQKMSVMS 312 >gi|290771185|emb|CAY80753.2| Rnr2p [Saccharomyces cerevisiae EC1118] Length = 399 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 102/333 (30%), Positives = 156/333 (46%), Gaps = 27/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WAL++ Q DAD F + L F E Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 239 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 292 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K E Sbjct: 293 PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-E 351 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383 >gi|6322434|ref|NP_012508.1| Rnr2p [Saccharomyces cerevisiae S288c] gi|1172946|sp|P09938|RIR2_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 1; AltName: Full=Ribonucleotide reductase R2 subunit 1; AltName: Full=Ribonucleotide reductase small subunit 1 gi|52695523|pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|52695524|pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|52695525|pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|52695526|pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae gi|172450|gb|AAA34988.1| ribonucleoside diphosphate reductase small subunit [Saccharomyces cerevisiae] gi|1008142|emb|CAA89317.1| RNR2 [Saccharomyces cerevisiae] gi|285812874|tpg|DAA08772.1| TPA: Rnr2p [Saccharomyces cerevisiae S288c] Length = 399 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 102/333 (30%), Positives = 156/333 (46%), Gaps = 27/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WAL++ Q DAD F + L F E Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 239 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 292 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K E Sbjct: 293 PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-E 351 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383 >gi|323347997|gb|EGA82256.1| Rnr2p [Saccharomyces cerevisiae Lalvin QA23] Length = 399 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 102/333 (30%), Positives = 156/333 (46%), Gaps = 27/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WAL++ Q DAD F + L F E Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 239 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 292 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K E Sbjct: 293 PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-E 351 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383 >gi|303272255|ref|XP_003055489.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463463|gb|EEH60741.1| predicted protein [Micromonas pusilla CCMP1545] Length = 322 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 91/329 (27%), Positives = 153/329 (46%), Gaps = 29/329 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 ML D L P+K+ W+ Y A + W E+ + DL W LT+ E+ I Sbjct: 1 MLQDNEDRFSLFPVKHVEVWKMYKQAVASFWNAEEIDLSTDLRDW---GNLTESEQHFIS 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ L + + PE R + Q E +HS T+ ++ + D Sbjct: 58 HVLAFFAASDGIVLENLGLRFLKDVQMPEARAFYGFQLAMENIHSETYGLLLETYIKDSV 117 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 L VP++ KA WAL++ Q+ E + + + EG++ Sbjct: 118 QRKHLMRAIHTVPTVGRKAQWALRWIQS--------------SECFAERLIAFACVEGIF 163 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + +K ++ Sbjct: 164 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSMLK-------HPLEPER 216 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + ++ +A +E + + + VG+NA +Y++F+A+R Q+G++ ++ T NPF Sbjct: 217 LQEIVKDAVEIEKEFVCDALSCALVGMNADLMSEYIEFVADRLLVQLGVDKVWN-TPNPF 275 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 WM E I L+ + NFFE RV EYQ+ + Sbjct: 276 DWM-ESISLQGKTNFFERRVGEYQRNGVM 303 >gi|260061082|ref|YP_003194162.1| putative ribonucleoside-diphosphate reductase small chain [Robiginitalea biformata HTCC2501] gi|88785214|gb|EAR16383.1| probable ribonucleoside-diphosphate reductase small chain [Robiginitalea biformata HTCC2501] Length = 328 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 88/337 (26%), Positives = 158/337 (46%), Gaps = 28/337 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 ++ ++ +L D + P+++ WE Y W E+ + DL+ W N L+D Sbjct: 1 MSAAEEPILKENKDRFVIFPIQHHDLWEWYKKCEACFWTAEEIDLHQDLSDWN--NKLSD 58 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I Sbjct: 59 DEKYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLID 118 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + DE E F P+I KA+WAL++ ++ + + + Sbjct: 119 TYVKDEKEKNVLFQAIENFPAIKKKADWALKWIES---------------PSFAERLIAF 163 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F F I L + M G+ + I RDE +H ++ + + N HL Sbjct: 164 AAVEGIFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHL------HNNHLV 217 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 K +++ ++ A +E + E++P +G+NA QY++F+ +R ++ E ++ Sbjct: 218 NKVPKERITQIITNALDIEREFITESLPVSLIGMNAKLMTQYLEFVTDRLLVELECEKVY 277 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 T NPF +M +I L+ + NFFE RV+EYQ+ + Sbjct: 278 NST-NPFDFMD-MISLQGKTNFFEKRVSEYQKAGVMN 312 >gi|151945057|gb|EDN63308.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae YJM789] gi|190409471|gb|EDV12736.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae RM11-1a] gi|256271075|gb|EEU06176.1| Rnr2p [Saccharomyces cerevisiae JAY291] Length = 399 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 97/333 (29%), Positives = 152/333 (45%), Gaps = 27/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WAL++ Q + V + E Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQDAD-------------ALFGERLVAFASIE 239 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 292 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K E Sbjct: 293 PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-E 351 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383 >gi|295103295|emb|CBL00839.1| Ribonucleotide reductase, beta subunit [Faecalibacterium prausnitzii SL3/3] Length = 347 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 156/350 (44%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ E +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +S+ N+ I +++ E L QAF+E V Sbjct: 67 DY---PRLLSTERSAYDKILSFLVFLDSIQTANL-PNIGAYITANEVNLCLSIQAFQECV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ R K + L T + + D L Sbjct: 123 HSQSYSYMLDTICSPVE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++ Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T E Q R M+ E EIA+ H + GLN Y++++ N R Sbjct: 237 KEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 296 Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G L+ E W+S+ D + +FFE R T Y + L D Sbjct: 297 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 346 >gi|207343947|gb|EDZ71248.1| YJL026Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 399 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 98/333 (29%), Positives = 153/333 (45%), Gaps = 27/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+S+V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDSIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WAL++ Q + V + E Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQDAD-------------ALFGERLVAFASIE 239 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 292 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K E Sbjct: 293 PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-E 351 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383 >gi|170664480|gb|ACB28637.1| small subunit ribonucleotide reductase [Myxoma virus] gi|170664652|gb|ACB28808.1| small subunit ribonucleotide reductase [recombinant virus 6918VP60-T2] Length = 322 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 93/334 (27%), Positives = 157/334 (47%), Gaps = 28/334 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++D+ +L D + P++Y W Y A + W P EV + DL W+ LT DE Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWR---VLTPDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 ++ E F + I KA W ++ ++ D + + L F Sbjct: 118 IINLQEKEKLFKAIETMDCIKQKAEWVQKWI------------RNKDATYAERLIAF-AS 164 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + KM G+ + I RDE LH +F + +K Sbjct: 165 VEGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFKHLKHT------- 217 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +++ +++ EA ++E + E +P +G+N QY++F+A+R ++G +F Sbjct: 218 PSEERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSA 277 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 T NPF +M E I L+ + NFFE RV++YQ+ + Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQRMGVV 309 >gi|323308423|gb|EGA61668.1| Rnr2p [Saccharomyces cerevisiae FostersO] Length = 399 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 102/333 (30%), Positives = 156/333 (46%), Gaps = 27/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WAL++ Q DAD F + L F E Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 239 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKNKPD 292 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ EA +E Y + +P +G+NA QY++F+A+R G + +K E Sbjct: 293 PAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV-E 351 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E I L + NFFE RV++YQ+ + Sbjct: 352 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383 >gi|290957506|ref|YP_003488688.1| ribonucleotide-diphosphate reductase small chain [Streptomyces scabiei 87.22] gi|260647032|emb|CBG70131.1| ribonucleotide-diphosphate reductase small chain [Streptomyces scabiei 87.22] Length = 355 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 101/322 (31%), Positives = 174/322 (54%), Gaps = 9/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L++ E+ MI R + FFA+ + Sbjct: 35 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSEGEQHMIGRLVAFFATGD 91 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 92 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRVAAFAAVE 151 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ D + FL +L F EG++FY FA + Sbjct: 152 NIPSIREKAEFCFKWMDSVEKLDRLESQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 210 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H++F +V++ ++ E P L+ + +Q+ ML EA Sbjct: 211 FRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDELLRQQVTDMLKEAVE 270 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ + + G G+N S QY++ +A++R ++G P++ ++NPF +M E+ ++ Sbjct: 271 AELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 328 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE R + YQ E D Sbjct: 329 ELTNFFERRPSAYQVAVEGTVD 350 >gi|91215505|ref|ZP_01252476.1| probable ribonucleoside-diphosphate reductase small chain [Psychroflexus torquis ATCC 700755] gi|91186457|gb|EAS72829.1| probable ribonucleoside-diphosphate reductase small chain [Psychroflexus torquis ATCC 700755] Length = 326 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 158/332 (47%), Gaps = 28/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + L P+ + WE Y + W E+ +Q D+ WK+ L+ DE+ Sbjct: 5 EPILEENKNRFVLFPITHPDIWEWYKKCEASFWTAEEIDLQQDITDWKT--KLSKDEQYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYTEAKFFYGFQIMVENIHSETYSLLIDTYVDD 122 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E F P+I KA+WALQ+ ++ + + + + EG Sbjct: 123 DKEKDLLFKAIENFPAIKKKADWALQWIES---------------DSFAERLIAFAAVEG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + N HL + + Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGVHCDFAVHL------HNEHLVNQVPK 221 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ R ++ +A +E + E++P +G+N+ QY++F+A+R ++G + + T N Sbjct: 222 ERIRAIIVDALTIEREFVTESLPVSLIGMNSNLMTQYLEFVADRLLFELGCDKEYG-TAN 280 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M +I L+ + NFFE RV EYQ+ + Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGEYQKAGVMN 311 >gi|15617531|ref|NP_258331.1| RR2B [Spodoptera litura NPV] gi|15553267|gb|AAL01745.1|AF325155_57 ribonucleotide reductase small subunit homolog [Spodoptera litura NPV] Length = 333 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 88/336 (26%), Positives = 158/336 (47%), Gaps = 28/336 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N+ D+ +L + P++Y W Y A + W EV + DL+ W + L + Sbjct: 8 NMSDEPLLQENPRRFVMFPIEYPDIWNMYKKAEASFWTVEEVDLSKDLSDW---DSLKES 64 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER IK L FFA+S+ +V N+V + + E R + Q E VHS + +I + Sbjct: 65 ERNFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQVAIENVHSEMYSLLIDT 124 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E FN +P+I KA W++++ ++ + + + + Sbjct: 125 YVKDNDEKRRLFNAIETMPAIAKKAEWSIKWIKSAT-------------ATFAERLIAFA 171 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I + + M G+ + I RDE LH +F + + H+ Sbjct: 172 AVEGIFFSGSFAAIFWMKKRGLMPGLTFSNELISRDEGLHTDFACLMYS-------HIVN 224 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K + + ++ EA +E + E +P +G+N +Y++F+A+R ++ E + Sbjct: 225 KPTRDRILDIITEAVAIENEFVTEALPVAMLGMNNDLMSKYIEFVADRLLLELIGERHYN 284 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 T+NPF +M+ +I L+ + NFFE +V+EYQ+ + Sbjct: 285 -TKNPFDFMN-LISLEGKTNFFEKKVSEYQKYGVMS 318 >gi|325286576|ref|YP_004262366.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489] gi|324322030|gb|ADY29495.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489] Length = 328 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 89/330 (26%), Positives = 155/330 (46%), Gaps = 28/330 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+K+ W+ Y + W E+ + DL WK N L DDER Sbjct: 6 EPILEKNEDRFVIFPIKHNDLWDWYKKCEASFWTAEEIDLHADLDDWK--NKLNDDERYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 IKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F+ P+I KA+WAL++ ++ + + + EG Sbjct: 124 EKEKDILFHALENFPAIRKKADWALKWIES---------------PSFAERLIAFAAVEG 168 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H ++ + + N HL K + Sbjct: 169 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHL------HNHHLINKVPK 222 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ +L +A +E + E++P +G+N+ QY++F+ +R ++ + ++ T N Sbjct: 223 ERITEILVDALDIEREFITESLPVSLIGMNSKLMTQYLEFVTDRLLVELNCDKVYNST-N 281 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 PF +M +I L+ + NFFE RV EYQ+ Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVAEYQKSGV 310 >gi|297265423|ref|XP_001091447.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Macaca mulatta] Length = 704 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 84/346 (24%), Positives = 137/346 (39%), Gaps = 58/346 (16%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + V+D+ +L + P++Y W+ Y A + W EV + D+ Sbjct: 401 AEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQH 460 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 W+S L +ER I L FFA+S+ +V N+V + + E R + Q E +H Sbjct: 461 WES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIH 517 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S + +I + D E FN +P + KA+WAL++ + Sbjct: 518 SEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI-------------GDKEA 564 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG++F FA I L + M G+ + I RDE Sbjct: 565 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE------------- 611 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 L +G+N +QY++F+A+R Sbjct: 612 ------------------------VSLNQIIGXXXXXXXXIGMNCTLMKQYIEFVADRLM 647 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 648 LELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 691 >gi|156087150|ref|XP_001610982.1| ribonucleoside-diphosphate reductase small subunit [Babesia bovis T2Bo] gi|154798235|gb|EDO07414.1| ribonucleoside-diphosphate reductase small subunit, putative [Babesia bovis] Length = 339 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 96/326 (29%), Positives = 159/326 (48%), Gaps = 29/326 (8%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 + N L P+KY WE Y A + W E+ + DL W + LT+ E IK L Sbjct: 26 EDPNRNGLYPIKYPDFWEWYKKAQASFWTSEEIDLSSDLKDWGT---LTEGEHHFIKNVL 82 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL- 145 FFA+S+ +V N+ L + + PE + + Q E +HS T+ +I DE E Sbjct: 83 AFFAASDGIVLENLALRFLKDVKLPEAKFFYCFQITVENIHSETYSLLIEQYIRDEAEKD 142 Query: 146 --FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 F + ++ KA WA ++ D++ + V Y EG++F Sbjct: 143 RLFRAIETIDAVRDKAIWAAKWMN--------------DEKSFAERIVAYAAVEGIFFSG 188 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 F I L + M G+ + I RDE LH +FG + +++K + P + + Sbjct: 189 SFCAIFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYSKLKHKLP-------AECVQQ 241 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 ++ EA +E + +++P +G+N+ QY++F+A+R +G+ P++K T+NPF WM Sbjct: 242 IIKEAVAVERVFVCDSLPTDLIGMNSMLMAQYIEFVADRLLQALGVPPVYK-TKNPFEWM 300 Query: 324 SEVIDLKKEKNFFETRVTEYQQGAEL 349 E+I ++ + NFFE RV EYQ+ L Sbjct: 301 -ELISVQGKTNFFEKRVGEYQKSGIL 325 >gi|239982206|ref|ZP_04704730.1| ribonucleotide-diphosphate reductase small chain [Streptomyces albus J1074] gi|291454052|ref|ZP_06593442.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces albus J1074] gi|291357001|gb|EFE83903.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces albus J1074] Length = 350 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 101/324 (31%), Positives = 177/324 (54%), Gaps = 11/324 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 30 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHLIGRLVAFFATGD 86 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 87 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRADAFAAVE 146 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ D ++FL +L F EG++FY FA + Sbjct: 147 NIPSIREKAEFCFRWMDSVDKLDQLESQADR-RKFLLNLICFAACIEGLFFYGAFAYVYW 205 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H++F DV++ ++ E P L+ + Q++ ML EA Sbjct: 206 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLQEQVVAMLKEAVE 265 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + G G+N S +Y++ +A++R ++G P++ ++NPF +M E+ ++ Sbjct: 266 AELQFARDLCGDGLPGMNTESMREYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 323 Query: 331 KEKNFFETRVTEYQQG--AELKWD 352 + NFFE RV+ YQ + +D Sbjct: 324 ELTNFFERRVSAYQVAVEGTVSFD 347 >gi|290995765|ref|XP_002680453.1| predicted protein [Naegleria gruberi] gi|284094074|gb|EFC47709.1| predicted protein [Naegleria gruberi] Length = 338 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 90/326 (27%), Positives = 154/326 (47%), Gaps = 28/326 (8%) Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 L PL Y WE Y + W EV + D+ W+ L +E+ IK L Sbjct: 25 NPHRFVLFPLHYPKMWEMYKKTMASFWTVEEVDLHTDITEWE---KLNSNEQHFIKTVLA 81 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL-- 145 FFA+S+ +V N+ + PE R + Q E +H+ + +I +L D+ E Sbjct: 82 FFAASDGIVNENLCQQFMAQVQVPEARCFYGFQIAIENIHAEMYSTLIETLIKDQRERNR 141 Query: 146 -FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 F+ VPS+ KANWAL++ + + + + + EG++F Sbjct: 142 LFHAIDTVPSVQKKANWALKWINS--------------ENLFAERLLAFACVEGIFFSGS 187 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 F I L + M G++ + I RDE LH +F + + +K +TK QQ ++ Sbjct: 188 FCSIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLYSTLK------YTKLPQQVVHSL 241 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 ++EA +E + E++P +G+N+ +QY++ +A+R IG E ++ + NPF WM+ Sbjct: 242 VYEAVEIEKEFISESLPVDLIGMNSRLMQQYIEMVADRLLVSIGYEKIYN-SSNPFDWMN 300 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 +I + + NFFE +V EY + + Sbjct: 301 -IISVSGKTNFFEKKVGEYAKANIMS 325 >gi|325119319|emb|CBZ54873.1| hypothetical protein NCLIV_052980 [Neospora caninum Liverpool] Length = 392 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 160/347 (46%), Gaps = 23/347 (6%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 T + + + + ++ +L A +LP+++ WE Y + W E+ + D Sbjct: 57 TPEQKLLSQQMKEKESEEPLLIANPRRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQD 116 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + W+S L +E+ IK L FFA+S+ +V N+ + PE R + Q E Sbjct: 117 MTHWES---LNSNEKHFIKYVLAFFAASDGIVLENLAEKFLSEIQIPEARAFYGFQIAME 173 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 +HS T+ +I DE E ++ V ++ A A A +++ + Sbjct: 174 NIHSETYSLLIDQYIRDEKEKMELFDAVHNVKAVAVKAAWAAMWINN-----------RN 222 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V + EG+ F F I L + M G+ + I RDE LH +F + +Q Sbjct: 223 CFAERLVGFACVEGILFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHADFACLLYSQ 282 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 +K + P + + M+ EA +E A+ E +P +G+N S QY++F+A+R Sbjct: 283 LKNKLPD-------KVVQDMVREAVTVERAFICEALPVDLIGMNNRSMAQYIEFVADRLL 335 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 +G+ +F T NPF WM E+I L+ + NFFE RV EYQ+ + Sbjct: 336 TSLGVPKIFFAT-NPFDWM-ELISLQGKTNFFEKRVGEYQKAGVMAD 380 >gi|291562343|emb|CBL41159.1| Ribonucleotide reductase, beta subunit [butyrate-producing bacterium SS3/4] Length = 346 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 156/350 (44%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ E ++V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 6 KPLFNPEGNLDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +S+ N+ I +++ E L QAF+E V Sbjct: 66 DY---PRLLSAERSAYDKILSFLVFLDSIQTANL-PNIGAYITANEVNLCLSIQAFQECV 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ R K + L T + + D L Sbjct: 122 HSQSYSYMLDTICSPVE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 175 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++ Sbjct: 176 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 235 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T Q R M+ E EIA+ H + GLN Y++++ N R Sbjct: 236 KEQPELFTAGSVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 295 Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G L+ E W+S+ D + +FFE R T Y + L D Sbjct: 296 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 345 >gi|12085003|ref|NP_073405.1| 20L protein [Yaba-like disease virus] gi|56404692|sp|Q9DHU2|RIR2_YLDV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|12056179|emb|CAC21258.1| 20L protein [Yaba-like disease virus] Length = 325 Score = 305 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 90/337 (26%), Positives = 154/337 (45%), Gaps = 28/337 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +N + +L + + P+ Y W+ Y A + W EV + D + W L+D Sbjct: 1 MNTSCEPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDW---LKLSD 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I Sbjct: 58 NEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLID 117 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + LD E FN + + KANWA ++ ++ + V + Sbjct: 118 TYILDSKEKNYLFNAIENMNCVKQKANWAKKWI-------------ESKNRTYGERLVAF 164 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F FA I + + M G+ + I RDE LH +F + HL Sbjct: 165 AAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACIMFK-------HLL 217 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 R ++ EA +E + E +P +G+N +QY++F+A+R ++G + + Sbjct: 218 NPPLNSVVRDIIIEAVNIEKNFLTEAIPVKLIGMNCDLMKQYIEFVADRLLLELGCDKYY 277 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++NPF +M E I L+ + NFFE RV+EYQ+ + + Sbjct: 278 -CSKNPFDFM-ENISLEGKTNFFEKRVSEYQKMSVMS 312 >gi|254388985|ref|ZP_05004216.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces clavuligerus ATCC 27064] gi|294814921|ref|ZP_06773564.1| Ribonucleoside-diphosphate reductase beta chain protein [Streptomyces clavuligerus ATCC 27064] gi|326443293|ref|ZP_08218027.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus ATCC 27064] gi|197702703|gb|EDY48515.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces clavuligerus ATCC 27064] gi|218078699|emb|CAB90708.3| class Ia ribonucleotide-diphosphate reductase small subunit chain [Streptomyces clavuligerus ATCC 27064] gi|294327520|gb|EFG09163.1| Ribonucleoside-diphosphate reductase beta chain protein [Streptomyces clavuligerus ATCC 27064] Length = 339 Score = 305 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 102/322 (31%), Positives = 172/322 (53%), Gaps = 9/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+ L+ E+ +I R + FFA+ + Sbjct: 19 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVPD---LAKLSPGEQHLIGRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRNAAFAAVE 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ D + FL +L F EG++FY FA + Sbjct: 136 NIPSIREKAQFCFRWMDSVEKLDQLETQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 194 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML EA Sbjct: 195 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKEAVE 254 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ ++ + G G+N S +Y+Q +A++R ++G P++ +ENPF +M E+ ++ Sbjct: 255 AELQFSRDLCGDGLPGMNTESMREYLQCVADQRLARLGFAPVYG-SENPFSFM-ELQGVQ 312 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE R + YQ E D Sbjct: 313 ELTNFFERRPSAYQVAVEGSVD 334 >gi|29829569|ref|NP_824203.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces avermitilis MA-4680] gi|29606677|dbj|BAC70738.1| putative ribonucleoside-diphosphate reductase beta chain [Streptomyces avermitilis MA-4680] Length = 338 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 105/322 (32%), Positives = 173/322 (53%), Gaps = 9/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A LT E+ +I R + FFA+ + Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTPAEQHLIGRLVAFFATGD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 75 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ + TK + FL +L F EG++FY FA + Sbjct: 135 NIPSIREKAEFCFKWINEVEKLDRLE-TKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 193 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H++F +V++ ++ E P L+ E QQ+ ML EA Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDDELQQQVTDMLREAVE 253 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ + + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ ++ Sbjct: 254 AELQFGRDLCGDGLPGMNTESMRQYLECVADQRLQRLGFAPVYG-SENPFSFM-ELQGVQ 311 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE R + YQ E D Sbjct: 312 ELTNFFERRASAYQVAVEGTVD 333 >gi|225010999|ref|ZP_03701465.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-3C] gi|225004906|gb|EEG42862.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium MS024-3C] Length = 328 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 91/339 (26%), Positives = 158/339 (46%), Gaps = 28/339 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 ++ + + +L D + P+K+ WE Y W E+ + +DL W N L + Sbjct: 1 MSNNVEPILTENPDRFVIFPIKHDDLWEWYKKCEACFWTAEEIDLSEDLNDWN--NKLNE 58 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DER +K L FFA+S+ +V N+ + E + + Q E +HS T+ +I Sbjct: 59 DERYFVKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLID 118 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + DE E F P+I KA+WAL++ ++ + + + Sbjct: 119 TYVKDEKEKNKLFKALENFPAIKEKADWALKWIES---------------PSFAERLIAF 163 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F F I L + M G+ + I RDE +H ++ + + N HL Sbjct: 164 AAVEGIFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHL------HNHHLI 217 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 K + + R +L +A +E + E++P +G+NA QY++F+ +R ++ E + Sbjct: 218 NKVPKARIREILVDALNIERTFITESLPASLIGMNAKLMTQYLEFVTDRLLVELQCEKEY 277 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 + NPF +M +I L+ + NFFE RV+EYQ+ L D Sbjct: 278 NVS-NPFDFMD-MISLQGKTNFFEKRVSEYQKAGVLNKD 314 >gi|312130971|ref|YP_003998311.1| ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM 17132] gi|311907517|gb|ADQ17958.1| Ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM 17132] Length = 328 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 84/333 (25%), Positives = 151/333 (45%), Gaps = 29/333 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P+K+ WE Y A + W E+ + D W S L D ER Sbjct: 10 EPLLMDDPTRFVIFPIKHNDIWEFYKKAEASFWTAEELDLSQDHKDWAS---LNDGERHF 66 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + ++ E + + Q E +H+ T+ +I + D Sbjct: 67 ISHVLAFFAASDGIVNENLAVGFLSNVQYAEAKCFYGFQIMIENIHAETYSLLIDTYIKD 126 Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E + N +P + KA+WA+++ + Q + + + EG Sbjct: 127 TTERQRMLNAIETIPCVKKKADWAIRWIE---------------QGTFIERLIAFAAVEG 171 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE LH +F + + + K + Sbjct: 172 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHRDFACLLYTKY------IVNKLPE 225 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ T++ +A +E + + +P +G+NAP QY++F+A+ + L+ ++ T N Sbjct: 226 EQVYTIIKDAVEIEKEFVSDALPVSLIGMNAPQMCQYIEFVADHLLESLNLKKVYNAT-N 284 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 PF +M +I L+ + NFFE RV EYQ+ Sbjct: 285 PFDFMD-LISLQGKTNFFEKRVGEYQKAGVTAD 316 >gi|302554045|ref|ZP_07306387.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces viridochromogenes DSM 40736] gi|302471663|gb|EFL34756.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces viridochromogenes DSM 40736] Length = 341 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 103/322 (31%), Positives = 175/322 (54%), Gaps = 9/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 21 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPAEQHLIGRLVAFFATGD 77 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 78 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVE 137 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA++ ++ ++ D + FL +L F EG++FY FA + Sbjct: 138 NIPSIREKASFCFKWMDSVEKLDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 196 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H++F DV++ ++ E P L+ + +Q+ ML EA Sbjct: 197 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLRQEVTDMLREAVE 256 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ ++ Sbjct: 257 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQGVQ 314 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE R + YQ E D Sbjct: 315 ELTNFFERRPSAYQVAVEGTVD 336 >gi|90023100|ref|YP_528927.1| amino acid adenylation [Saccharophagus degradans 2-40] gi|89952700|gb|ABD82715.1| Class Ia ribonucleoside-diphosphate reductase beta subunit [Saccharophagus degradans 2-40] Length = 368 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 139/348 (39%), Positives = 197/348 (56%), Gaps = 6/348 (1%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 G + + V DKR++N +D+NQL P KY WAW+ +++A NHW P ++ M D Sbjct: 27 AGQAATPNAQAPVCASDKRVINGHTDINQLAPFKYPWAWDFFINANKNHWTPLDINMSQD 86 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + +K + LT+ ER M + L + +S+ L NI LA+ ++ PE + Y RQ +EE Sbjct: 87 VYDYK--HNLTEAERHMYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEE 144 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A+H+ T+Q+ I +LGLD+GE++N YR VP I AK A + +++ D Sbjct: 145 ALHTWTYQHCIETLGLDQGEIYNRYRVVPEINAKIQMANRRLESILRSDIDLTDPDQLNN 204 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 F+ F VFEG WFY GF+ I +L R M G AEQ QYIMRDE++H FGI ++Q Sbjct: 205 FILAYIFFAAVFEGCWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDETMHCAFGIQTVSQ 264 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 I IEN T +TM EA E YA + + +G +A + +FIANRR Sbjct: 265 IIIEN---CTNIDVDAIKTMWEEADEAEANYARYILREPILGYSANDHIEQFRFIANRRA 321 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 Q+GLE F + PW+ E +++KEKNFFETRV EYQ L+WD Sbjct: 322 RQLGLEEPFPQAKCALPWLDEQANIRKEKNFFETRVIEYQ-AGGLEWD 368 >gi|321263951|ref|XP_003196693.1| ribonucleotide reductase small subunit [Cryptococcus gattii WM276] gi|317463170|gb|ADV24906.1| Ribonucleotide reductase small subunit, putative [Cryptococcus gattii WM276] Length = 430 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 159/349 (45%), Gaps = 31/349 (8%) Query: 4 NTGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 N G P + + +++ +L L P+KY W+ Y A + W E+ Sbjct: 79 NKGRKPAGKDKMPMKFLEEEEEDILRESDSRFVLFPIKYNEIWQAYKRAQASFWTAEELD 138 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 DL W + +T+ ER I R L FFA+S+ +V NIV + E R + Q Sbjct: 139 FGHDLIDWHDR--MTEQERFFILRILAFFAASDGIVGENIVSQFSLEVQIAEARAFYSFQ 196 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 + E VHS T+ +I + D E F +P I KA+WAL+Y Sbjct: 197 SMIEQVHSETYSLLIETYVRDAQEKDFLFRGMENIPCIKQKADWALKYI----------- 245 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 D+ + V + EG++F FA I L + M G+ + I RDE +H +F Sbjct: 246 ---TDELPFRTRLVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTDF 302 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + N +K + ++ EA ++E + + +P +G+NA QYM+ Sbjct: 303 ACLLYNHLKHRCST-------DEVHRIVSEALVIEKQFLTDALPCALIGINAHLMCQYME 355 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 F+A+R +G ++ T NPF WM E+I L+ + NFFE+RV+ YQ+ Sbjct: 356 FVADRLVVDLGYPKIYNAT-NPFDWM-ELISLQGKANFFESRVSAYQKA 402 >gi|254384639|ref|ZP_04999978.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp. Mg1] gi|194343523|gb|EDX24489.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp. Mg1] Length = 338 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 103/322 (31%), Positives = 173/322 (53%), Gaps = 9/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A LT E+ MI R + FFA+ + Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTPAEQHMIGRLVAFFATGD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F+ Sbjct: 75 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E+PSI KA + ++ + D + FL +L F EG++FY FA + Sbjct: 135 EIPSIREKAQFCFKWINEVEKLDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 193 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML EA Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKEAVD 253 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ + + G G+N S +Y++ +A++R ++G P++ ++NPF +M E+ ++ Sbjct: 254 AELQFGRDLCGDGLPGMNTESMREYLECVADQRLVRLGFAPVYG-SQNPFSFM-ELQGVQ 311 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE R + YQ E D Sbjct: 312 ELTNFFERRPSAYQVAVEGTVD 333 >gi|6525234|gb|AAF15363.1|AF205376_1 ribonucleotide reductase R2 subunit [Plasmodium falciparum] Length = 320 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 91/331 (27%), Positives = 158/331 (47%), Gaps = 29/331 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +R+LN SD L P+ Y W+ Y A + W E+ + DL ++ L ++E+ Sbjct: 2 RRILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE---KLNENEKHF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + D Sbjct: 59 IKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F+ +P++ KA WA ++ D + V EG Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWIN--------------DTNSFAERIVANACVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + F F I + NK+ G+ + I RDE LH +F + + + + P Sbjct: 165 ILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLPE------- 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 Q + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G +F +++N Sbjct: 218 QMVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HSKN 276 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 PF WM +I L+ + NFFE RV +YQ+ + Sbjct: 277 PFNWMD-LISLQGKTNFFEKRVADYQKSGVM 306 >gi|237845387|ref|XP_002371991.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii ME49] gi|211969655|gb|EEB04851.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii ME49] gi|221501644|gb|EEE27410.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii VEG] Length = 391 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 94/332 (28%), Positives = 154/332 (46%), Gaps = 29/332 (8%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +L A +LP+++ WE Y + W E+ + D+ W++ L ++E+ I Sbjct: 74 PLLMANPHRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFI 130 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 K L FFA+S+ +V N+ + PE R + Q E +HS T+ +I DE Sbjct: 131 KYVLAFFAASDGIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDE 190 Query: 143 GEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 E F+ V ++ KA WA + ++ + V + EG+ Sbjct: 191 EEKLQLFDAVHNVKAVAVKAAWAAMWIN--------------NRNCFAERLVGFACVEGI 236 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 F F I L + M G+ + I RDE LH +F + +Q+K + P + Sbjct: 237 LFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHADFACLLYSQLKHKLPD-------K 289 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319 + M+ EA +E A+ E +P +G+N S QY++F+A+R +G+ +F T NP Sbjct: 290 VVQDMVREAVTVERAFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKIFFAT-NP 348 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 F WM E+I L+ + NFFE RV EYQ+ + Sbjct: 349 FDWM-ELISLQGKTNFFEKRVGEYQKAGVMAD 379 >gi|221480670|gb|EEE19110.1| ribonucleotide-diphosphate reductase, small subunit, putative [Toxoplasma gondii GT1] Length = 391 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 94/332 (28%), Positives = 154/332 (46%), Gaps = 29/332 (8%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +L A +LP+++ WE Y + W E+ + D+ W++ L ++E+ I Sbjct: 74 PLLMANPHRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFI 130 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 K L FFA+S+ +V N+ + PE R + Q E +HS T+ +I DE Sbjct: 131 KYVLAFFAASDGIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDE 190 Query: 143 GEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 E F+ V ++ KA WA + ++ + V + EG+ Sbjct: 191 EEKLQLFDAVHNVKAVAVKAAWAAMWIN--------------NRNCFAERLVGFACVEGI 236 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 F F I L + M G+ + I RDE LH +F + +Q+K + P + Sbjct: 237 LFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHADFACLLYSQLKHKLPD-------K 289 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319 + M+ EA +E A+ E +P +G+N S QY++F+A+R +G+ +F T NP Sbjct: 290 VVQDMVREAVTVERAFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKIFFAT-NP 348 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 F WM E+I L+ + NFFE RV EYQ+ + Sbjct: 349 FDWM-ELISLQGKTNFFEKRVGEYQKAGVMAD 379 >gi|9633826|ref|NP_051904.1| gp015L [Rabbit fibroma virus] gi|6578545|gb|AAF17899.1|AF170722_17 gp015L [Rabbit fibroma virus] Length = 322 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 94/335 (28%), Positives = 155/335 (46%), Gaps = 28/335 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 ++D+ +L D + P++Y W+ Y A + W P EV + DL W LT DE Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWKMYKKAVASFWTPEEVDISKDLKDWH---ILTSDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAIENIHSEMYSLLIDTY 117 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 +D E F + I KA W ++ ++ D + + L F Sbjct: 118 IIDIQEKEKLFKAIETMDCIKQKAEWVQKWI------------RNKDATYAERLIAF-AS 164 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + KM G+ + I RDE LH +F + HL Sbjct: 165 VEGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFK-------HLNHT 217 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + ++ ++ EA ++E + + +P +G+N QY++F+A+R ++G +F Sbjct: 218 PSETRATDIIKEAVVIEQQFLTKALPVRLIGINCDLMCQYIEFVADRLVTELGYSKIFSA 277 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 T NPF +M E I L+ + NFFE RV++YQ+ Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQRMGVAS 310 >gi|157939640|ref|YP_001497012.1| ribonucleotide reductase [Tanapox virus] gi|146746356|gb|ABQ43492.1| ribonucleotide reductase [Tanapox virus] gi|146746512|gb|ABQ43647.1| ribonucleotide reductase [Tanapox virus] Length = 325 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 90/337 (26%), Positives = 153/337 (45%), Gaps = 28/337 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +N + +L + + P+ Y W+ Y A + W EV + D + W L+D Sbjct: 1 MNTPCEPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDW---LKLSD 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I Sbjct: 58 NEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLID 117 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + LD E FN + + KANWA ++ ++ + V + Sbjct: 118 TYILDSKEKNYLFNAIENMNCVKQKANWAKKWI-------------ESKNRTYGERLVAF 164 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F FA I + + M G+ + I RDE LH +F + HL Sbjct: 165 AAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACIMFK-------HLL 217 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 R ++ EA +E + E +P +G+N +QY++F+A+R ++G + Sbjct: 218 NPPLNSVVRDIIIEAVNIEKNFLTEAIPVKLIGMNCDLMKQYIEFVADRLLLELGCNKYY 277 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++NPF +M E I L+ + NFFE RV+EYQ+ + + Sbjct: 278 -CSKNPFDFM-ENISLEGKTNFFEKRVSEYQKMSVMS 312 >gi|328884923|emb|CCA58162.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit [Streptomyces venezuelae ATCC 10712] Length = 338 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 106/339 (31%), Positives = 179/339 (52%), Gaps = 9/339 (2%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 ++ +D++ L L P++Y +E+Y A N W EV + D+A LT Sbjct: 1 MSTNDEKNLLDPGFELTLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTP 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ Sbjct: 58 GEQHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLD 117 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + D + F +PSI KA + ++ ++ D + FL +L F Sbjct: 118 TYLPDPEDRAAAFAAVENIPSIREKAQFCFRWMDSVEKIDRLETQADR-RRFLLNLICFA 176 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++FY FA + + G+A ++ RDE++H+NF +V++ ++ E P L+ Sbjct: 177 ACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELF 236 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +Q+ ML EA E+ + + G G+N S +Y+Q +A++R ++G P++ Sbjct: 237 DDALRQQVTDMLKEAVEAELQFGRDLCGDGLPGMNTESMREYLQCVADQRLQRLGFAPVY 296 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +ENPF +M E+ +++ NFFE R + YQ E D Sbjct: 297 G-SENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGSVD 333 >gi|281204152|gb|EFA78348.1| ribonucleotide reductase-related protein [Polysphondylium pallidum PN500] Length = 323 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 87/333 (26%), Positives = 149/333 (44%), Gaps = 28/333 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + ++ +L D L P+K+ W+ Y A + W E+ + DL W+ L D+E Sbjct: 2 MQEEPILKENKDRFVLFPIKHQDVWKFYKKAEASFWTAEEIDLAPDLRDWQD--KLNDNE 59 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + Sbjct: 60 RYFISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAMENIHSETYSLLIDTY 119 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 + E FN +P + KANWAL++ ++ + V + Sbjct: 120 IQNPAEKTKLFNAIETIPCVQKKANWALKWI--------------SNSTSFAERLVAFAA 165 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F F I L + N M G+ ++I RDE LH F + ++ L K Sbjct: 166 VEGIFFSGSFCSIFWLKKRNLMSGLCSSNEFISRDEGLHCQFACLLYSK-------LVNK 218 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + +++ +A E + +++P +G+N +Y++F+A+ +G + ++ Sbjct: 219 LDAKTIESIIRDAVDCEKEFITQSLPVDLIGMNNRLMSEYIEFVADHLIVALGYKKIYN- 277 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 T NPF WM E+I + NFFE R T Y Sbjct: 278 TANPFDWM-ELISIDTRTNFFEHRNTSYTIPGV 309 >gi|320008647|gb|ADW03497.1| Ribonucleoside-diphosphate reductase [Streptomyces flavogriseus ATCC 33331] Length = 338 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 104/320 (32%), Positives = 174/320 (54%), Gaps = 9/320 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATGD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F+ Sbjct: 75 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFDAVE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E+PSI KA + ++ ++ TK + FL +L F EG++FY FA + Sbjct: 135 EIPSIREKAQFCFRWMDSVEKIERLE-TKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 193 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H+NF +V++ ++ E P L+ E +Q+ ML EA Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDELRQQVTDMLKEAVE 253 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ + + G G+N S QY++ +A++R ++G L+ +ENPF +M E+ ++ Sbjct: 254 AELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFPALYG-SENPFSFM-ELQGVQ 311 Query: 331 KEKNFFETRVTEYQQGAELK 350 + NFFE R + YQ E Sbjct: 312 ELTNFFERRPSAYQVAVEGS 331 >gi|305665630|ref|YP_003861917.1| putative ribonucleoside-diphosphate reductase small chain [Maribacter sp. HTCC2170] gi|88710386|gb|EAR02618.1| probable ribonucleoside-diphosphate reductase small chain [Maribacter sp. HTCC2170] Length = 328 Score = 303 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 83/334 (24%), Positives = 154/334 (46%), Gaps = 28/334 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+++ WE Y W E+ + DL W + L DDE+ Sbjct: 6 EPILQENKDRFVIFPIQHHDLWEWYKKQEACIWTAEEIDLHQDLTDWNT--KLNDDEKYF 63 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 64 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E F P+I KA+WAL++ ++ + + + EG Sbjct: 124 DKEKDILFKAIENFPAIKKKADWALKWIES---------------PSFAERLIAFAAVEG 168 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H ++ + + H+ K + Sbjct: 169 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHL------HKNHIVNKVTK 222 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ ++ +A +E + E++P +G+N+ QY++F+ +R ++ + ++ + N Sbjct: 223 ERITDIIVDALNIEREFITESLPVSLIGMNSKLMTQYLEFVTDRLLVELECDKVYN-SSN 281 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PF +M +I L+ + NFFE RV+EYQ+ L D Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVSEYQKAGVLNKD 314 >gi|297202281|ref|ZP_06919678.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sviceus ATCC 29083] gi|197710199|gb|EDY54233.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sviceus ATCC 29083] Length = 340 Score = 303 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 103/322 (31%), Positives = 172/322 (53%), Gaps = 9/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+ L+ E+ +I R + FFA+ + Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVTD---LAKLSPAEQHLIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F+ Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPQDRAAAFDAVE 136 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ + D + FL +L F EG++FY FA + Sbjct: 137 NIPSIREKAEFCFRWINEVEKLDRLESQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 195 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H++F DV++ ++ E P L+ QQ+ ML EA Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDRLQQQVTDMLAEAVE 255 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ ++ Sbjct: 256 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQGVQ 313 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE R + YQ E D Sbjct: 314 ELTNFFERRPSAYQVAVEGTVD 335 >gi|239944172|ref|ZP_04696109.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces roseosporus NRRL 15998] gi|239990628|ref|ZP_04711292.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces roseosporus NRRL 11379] gi|291447643|ref|ZP_06587033.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces roseosporus NRRL 15998] gi|291350590|gb|EFE77494.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces roseosporus NRRL 15998] Length = 338 Score = 303 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 104/320 (32%), Positives = 175/320 (54%), Gaps = 9/320 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATGD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F+ Sbjct: 75 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E+PSI KA + ++ ++ TK + FL +L F EG++FY FA + Sbjct: 135 EIPSIREKAQFCFKWMDSVEKIERLE-TKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 193 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H+NF +V++ ++ E P L+ E QQ+ ML EA Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDELQQQVTDMLKEAVE 253 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ + + +G G+N S QY++ +A++R ++G ++ +ENPF +M E+ ++ Sbjct: 254 AELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGFPTVYG-SENPFSFM-ELQGVQ 311 Query: 331 KEKNFFETRVTEYQQGAELK 350 + NFFE R + YQ E Sbjct: 312 ELTNFFERRPSAYQVAVEGS 331 >gi|83649535|ref|YP_437970.1| ribonucleotide reductase subunit beta [Hahella chejuensis KCTC 2396] gi|83637578|gb|ABC33545.1| Ribonucleotide reductase, beta subunit [Hahella chejuensis KCTC 2396] Length = 405 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 135/345 (39%), Positives = 193/345 (55%), Gaps = 7/345 (2%) Query: 9 PIQAGEK--RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P + +K VN DDKR++N +D+NQL P KY WAWE +L+A NHW P ++ M D+ Sbjct: 66 PEEVPQKLDPVNPDDKRVVNGMTDINQLAPFKYPWAWEFFLNANKNHWTPLDINMSQDVY 125 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + LT +E+ + + L + +S+ L NI LA+ +S PE + Y RQ +EE++ Sbjct: 126 DYH--HKLTLEEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEESL 183 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 H+ T+Q+ I ++GLD+ E++N YR P+I K + L P +D + F+ Sbjct: 184 HTWTYQHCIETIGLDQSEIYNRYRVTPAIYRKIKMGNERISALLRPDINLRNRDDLETFV 243 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 F +FEG WFY GF+ I +L R M G EQ QYIMRDE +H FGI V+ QI Sbjct: 244 MAYIFFAGIFEGCWFYNGFSPIFALQRRGLMKGTGEQLQYIMRDEVMHCAFGIRVVKQII 303 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E + +T+ EA E YAH + + +G A + +FIANRR Q Sbjct: 304 KEEGVTLDP---KAIKTLWEEAEAAETGYAHFLLKEPILGYTAEDHIEQFRFIANRRAKQ 360 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 + L+ F N PW+ E ++KEKNFFETRVTEYQ GA L+W Sbjct: 361 LKLDEPFPGAGNALPWLDEQASMRKEKNFFETRVTEYQTGASLQW 405 >gi|1710398|sp|P50650|RIR2_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|555613|gb|AAA50170.1| ribonucleotide reductase small subunit [Plasmodium falciparum] Length = 349 Score = 303 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 159/332 (47%), Gaps = 29/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++LN SD L P+ Y W+ Y A + W E+ + DL ++ L ++E+ Sbjct: 30 NEKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE---KLNENEKH 86 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 87 FIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIK 146 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 DE E F+ +P++ KA WA ++ D + V E Sbjct: 147 DEKERLNLFHAIENIPAVKNKALWAAKWIN--------------DTNSFAERIVANACVE 192 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G+ F F I + NK+ G+ + I RDE LH +F + + + + P Sbjct: 193 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLPE------ 246 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 Q + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G +F +++ Sbjct: 247 -QIIQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HSK 304 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF WM +I L+ + NFFE RV +YQ+ + Sbjct: 305 NPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335 >gi|301097698|ref|XP_002897943.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] gi|262106388|gb|EEY64440.1| ribonucleoside-diphosphate reductase small chain [Phytophthora infestans T30-4] Length = 360 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 80/351 (22%), Positives = 150/351 (42%), Gaps = 41/351 (11%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + + +S + E + + L A + L P++ W+ Y A + W E+ Sbjct: 33 LKDELEMSEYKRKELSGELQPEPYLVANPNRFVLFPIQEHDVWQMYKKAEASFWTAEELD 92 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DL W LTD+ER IK L FFA+S+ +V N+ + + PE R + Q Sbjct: 93 LVHDLNDWA---KLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQIPEARCFYGFQ 149 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS + +I + D E +P + K Sbjct: 150 IAIENIHSEVYSLLIDTYIKDAVEKDHLLRAIETIPCVQKK------------------- 190 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 + + + EG++F F + L + M G++ + I RDE +H +F Sbjct: 191 -------HSNERLLAFAAVEGIFFSGSFCSVFWLKKRGLMPGLSFSNEMISRDEGMHTDF 243 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + +++ + P + ++ +A +E + +++P +G+N+ QY++ Sbjct: 244 ACLMYSKLVNKLPE-------SRVHEIIRDAVAIEHEFVCDSLPVELIGMNSALMCQYIE 296 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 F+A+R + +G+ ++ +NPF WM +I L+ + NFFE RV EY + Sbjct: 297 FVADRLLYSLGVSKIYNV-KNPFDWMD-MISLQGKTNFFEKRVGEYSKAGV 345 >gi|58260834|ref|XP_567827.1| ribonucleotide reductase small subunit [Cryptococcus neoformans var. neoformans JEC21] gi|134117207|ref|XP_772830.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255448|gb|EAL18183.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229908|gb|AAW46310.1| ribonucleotide reductase small subunit, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 430 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 97/326 (29%), Positives = 151/326 (46%), Gaps = 28/326 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +L L P+KY W+ Y A + W E+ DL W + +T+ ER I Sbjct: 102 ILRESESRFVLFPIKYNEIWQAYKHAQASFWTAEELDFGHDLIDWHDR--MTEQERFFIL 159 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R L FFA+S+ +V NIV + E R + Q+ E VHS T+ +I + D Sbjct: 160 RILAFFAASDGIVGENIVSQFALEVQIAEARAFYSFQSMIEQVHSETYSLLIETYVRDAQ 219 Query: 144 EL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E F +P I KA+WAL+Y D+ + V + EG++ Sbjct: 220 EKDFLFRGMTNIPCIKQKADWALKYI--------------TDELPFRTRLVAFACVEGIF 265 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F FA I L + M G+ + I RDE +H +F + N +K + Sbjct: 266 FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLLYNHLKHRCST-------DE 318 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA ++E + + +P +G+NA QYM+F+A+R +G ++ T NPF Sbjct: 319 VHHIVSEALVIEKQFLTDALPCALIGINAHLMCQYMEFVADRLVVDLGYPKIYNAT-NPF 377 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346 WM E+I L+ + NFFE+RV+ YQ+ Sbjct: 378 DWM-ELISLQGKANFFESRVSAYQKA 402 >gi|329939692|ref|ZP_08288993.1| ribonucleotide-diphosphate reductase small chain [Streptomyces griseoaurantiacus M045] gi|329301262|gb|EGG45157.1| ribonucleotide-diphosphate reductase small chain [Streptomyces griseoaurantiacus M045] Length = 347 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 105/320 (32%), Positives = 174/320 (54%), Gaps = 9/320 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A LT ER +I R + FFA+ + Sbjct: 27 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAKLTPAERHLIGRLVAFFATGD 83 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 84 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 143 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ T+ + FL +L F EG++FY FA + Sbjct: 144 NIPSIREKAEFCFRWMDSVERLDRLE-TRSDRRRFLLNLICFAACIEGLFFYGAFAYVYW 202 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H++F DV++ ++ E P L+ +E ++ ML EA Sbjct: 203 FRGRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPGLFDEELGRQVTDMLREAVE 262 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + G G+N S QY+Q +A++R ++G P++ +ENPF +M E+ ++ Sbjct: 263 AELQFARDLCGDGLPGMNTESMRQYLQCVADQRLVRLGFAPVYG-SENPFSFM-ELQGVQ 320 Query: 331 KEKNFFETRVTEYQQGAELK 350 + NFFE R + YQ E Sbjct: 321 ELTNFFERRASAYQVAVEGS 340 >gi|124808087|ref|XP_001348226.1| ribonucleotide reductase small subunit [Plasmodium falciparum 3D7] gi|23497116|gb|AAN36665.1|AE014816_50 ribonucleotide reductase small subunit [Plasmodium falciparum 3D7] Length = 349 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 159/332 (47%), Gaps = 29/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++++LN SD L P+ Y W+ Y A + W E+ + DL ++ L ++E+ Sbjct: 30 NEKILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE---KLNENEKH 86 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + Sbjct: 87 FIKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIK 146 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 DE E F+ +P++ KA WA ++ D + V E Sbjct: 147 DEKERLNLFHAIENIPAVKNKALWAAKWIN--------------DTNSFAERIVANACVE 192 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G+ F F I + NK+ G+ + I RDE LH +F + + + + P Sbjct: 193 GILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLPE------ 246 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 Q + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G +F +++ Sbjct: 247 -QMVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HSK 304 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF WM +I L+ + NFFE RV +YQ+ + Sbjct: 305 NPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335 >gi|302558498|ref|ZP_07310840.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces griseoflavus Tu4000] gi|302476116|gb|EFL39209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces griseoflavus Tu4000] Length = 341 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 103/322 (31%), Positives = 175/322 (54%), Gaps = 9/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ +E+ +I R + FFA+ + Sbjct: 21 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAKLSPEEQHLIGRLVAFFATGD 77 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 78 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 137 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ D + FL +L F EG++FY FA + Sbjct: 138 NIPSIREKAEFCFRWMDSVEKLDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 196 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H++F DV++ ++ E P L+ ++ Q+ ML EA Sbjct: 197 FRGRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDEQLGQQVTAMLREAVE 256 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ ++ Sbjct: 257 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLVRLGFAPVYG-SENPFSFM-ELQGVQ 314 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE R + YQ E D Sbjct: 315 ELTNFFERRPSAYQVAVEGTVD 336 >gi|182436093|ref|YP_001823812.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776718|ref|ZP_08235983.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus XylebKG-1] gi|178464609|dbj|BAG19129.1| putative ribonucleoside-diphosphate reductase small subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657051|gb|EGE41897.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus XylebKG-1] Length = 338 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 103/320 (32%), Positives = 174/320 (54%), Gaps = 9/320 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATGD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F+ Sbjct: 75 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAVE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E+PSI KA + ++ ++ TK + FL +L F EG++FY FA + Sbjct: 135 EIPSIREKAQFCFRWMDSVEKIDRLE-TKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 193 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML EA Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDALQQQVTDMLKEAVE 253 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ + + +G G+N S QY++ +A++R ++G ++ +ENPF +M E+ ++ Sbjct: 254 AELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGFPTVYG-SENPFSFM-ELQGVQ 311 Query: 331 KEKNFFETRVTEYQQGAELK 350 + NFFE R + YQ E Sbjct: 312 ELTNFFERRPSAYQVAVEGS 331 >gi|239929012|ref|ZP_04685965.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces ghanaensis ATCC 14672] Length = 339 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 102/322 (31%), Positives = 172/322 (53%), Gaps = 9/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 19 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPAEQHLIGRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + + ++ D + FL +L F EG++FY FA + Sbjct: 136 NIPSIREKAEFCFTWMDSVEKLDRLQTQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 194 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H++F DV++ ++ E P L+ + Q+ ML EA Sbjct: 195 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDERLGQQVTDMLREAVE 254 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + G G+N S QY++ +A++R ++G P++ ++NPF +M E+ ++ Sbjct: 255 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 312 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE R + YQ E D Sbjct: 313 ELTNFFERRPSAYQVAVEGTVD 334 >gi|256391238|ref|YP_003112802.1| ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM 44928] gi|256357464|gb|ACU70961.1| Ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM 44928] Length = 331 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 109/324 (33%), Positives = 180/324 (55%), Gaps = 11/324 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +++Y A N W EV + DL + L+ ER ++ R + FFA+ + Sbjct: 11 LRPMRYPHFFDRYRDAIKNTWTVEEVDLHSDLTD---LDRLSAAERHLVSRLVAFFATGD 67 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F Sbjct: 68 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEDERTEAFAAVE 127 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ +L + +++ + FL +L F EG++FY FA + Sbjct: 128 NIPSIRRKAEFCFRWIDSLGNLQRLE-SREDRRAFLLNLICFAACIEGLFFYGAFAYVYF 186 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F DV++ ++ E P L+ ++ Q+ R ML EA Sbjct: 187 LRSRGLLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDEKMAQQVREMLAEAVE 246 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E +A + + G GL Y++ +A+RR Q+GLEP++ T NP +M E+ D++ Sbjct: 247 CETQFAGDLLGGGVSGLPVADMRAYLEHVADRRLEQLGLEPMYG-TANPLGFM-ELQDVQ 304 Query: 331 KEKNFFETRVTEYQ--QGAELKWD 352 + NFFE RV+ YQ G + +D Sbjct: 305 ELSNFFERRVSAYQVAVGGSVSFD 328 >gi|153814165|ref|ZP_01966833.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756] gi|317499963|ref|ZP_07958199.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087814|ref|ZP_08336739.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 3_1_46FAA] gi|145848561|gb|EDK25479.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756] gi|316898680|gb|EFV20715.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium 8_1_57FAA] gi|330409509|gb|EGG88950.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 3_1_46FAA] Length = 353 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 89/357 (24%), Positives = 160/357 (44%), Gaps = 15/357 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 + P+ + +V +RM+ + ++N LKY WA E Y A NN W+P E+ Sbjct: 6 IKKPLPHKPLFNPDGDTDVLKRRMIGGNTTNLNDYNNLKYTWASEWYRQAMNNFWIPEEI 65 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D+ + L+ ER + L F +S+ N+ + +++ E L Sbjct: 66 NLSQDIKDY---PNLSPAERKAYDKILSFLVFLDSIQTANLPC-VGEYITANEVNLCLNI 121 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 Q F+E VHS ++ Y++ ++ + + +Y K + L T + Sbjct: 122 QTFQECVHSQSYSYMLDTICSPDERMDILY------QWKTDEHLLKRNTFIGECYNEFQV 175 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D L + + V EG++F++GF +L R KM G A++ +YI RDE+ HL Sbjct: 176 KKDARTLVKVMMANFVLEGIYFFSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFR 235 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 ++I +++ E+P L+ + + +L EA EI +A + GLN Y++++ Sbjct: 236 NIIIELRKEHPELFDDHMVSEMKELLMEAVRQEIEWACYVIGNEVPGLNEKMITDYIRYL 295 Query: 300 ANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 N R +G P++ E W+S+ + + +FFE R T Y + L D Sbjct: 296 GNLRWKSLGYAPIYPGCEREPETMKWVSQYSNANMVKTDFFEARSTAYAKSTALIDD 352 >gi|282861024|ref|ZP_06270089.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE] gi|282563682|gb|EFB69219.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE] Length = 340 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 103/320 (32%), Positives = 173/320 (54%), Gaps = 9/320 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F+ Sbjct: 77 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFDAVE 136 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E+PSI KA + ++ ++ D + FL +L F EG++FY FA + Sbjct: 137 EIPSIREKAQFCFKWMDSVEEIDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 195 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML EA Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLREAVE 255 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ + + +G G+N S QY++ +A++R ++G L+ +ENPF +M E+ ++ Sbjct: 256 AELQFGRDLCGEGLPGMNTESMRQYLECVADQRLTRLGFPALYG-SENPFSFM-ELQGVQ 313 Query: 331 KEKNFFETRVTEYQQGAELK 350 + NFFE R + YQ E Sbjct: 314 ELTNFFERRPSAYQVAVEGS 333 >gi|291437353|ref|ZP_06576743.1| ribonucleotide-diphosphate reductase small chain [Streptomyces ghanaensis ATCC 14672] gi|291340248|gb|EFE67204.1| ribonucleotide-diphosphate reductase small chain [Streptomyces ghanaensis ATCC 14672] Length = 340 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 102/322 (31%), Positives = 172/322 (53%), Gaps = 9/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPAEQHLIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 136 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + + ++ D + FL +L F EG++FY FA + Sbjct: 137 NIPSIREKAEFCFTWMDSVEKLDRLQTQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 195 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H++F DV++ ++ E P L+ + Q+ ML EA Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDERLGQQVTDMLREAVE 255 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + G G+N S QY++ +A++R ++G P++ ++NPF +M E+ ++ Sbjct: 256 AELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 313 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE R + YQ E D Sbjct: 314 ELTNFFERRPSAYQVAVEGTVD 335 >gi|47208564|emb|CAF96041.1| unnamed protein product [Tetraodon nigroviridis] Length = 352 Score = 301 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 92/362 (25%), Positives = 153/362 (42%), Gaps = 56/362 (15%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 + + +L + P++Y W+ Y A + W EV + DLA W + L +E+ Sbjct: 3 EGEPLLQENPRRFVIFPIQYPDIWKMYKQAQASFWTVEEVDLSKDLAHW---DSLKPEEK 59 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I L FFA+S+ +V N+V + + PE R + Q E+VHS + +I + Sbjct: 60 HFISHVLAFFAASDGIVNENLVQRFCQEVQVPEARSFYSYQVLIESVHSEMYSLLINTYI 119 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D E FN +P + KA+WALQ+ + V + Sbjct: 120 RDLKEREHLFNAIYTMPCVKRKADWALQWIND-------------STSTFGERLVAFAAV 166 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++F FA I L + M G+ + I RDE LH F + + + K Sbjct: 167 EGIFFSGSFASIYWLKKRGLMPGLTYSNELISRDEGLHCTFACLLYSYLVK-------KP 219 Query: 257 FQQKSRTMLHEATLLE----------------------------IAYAHETMPKGFVGLN 288 + + + ++ +A +E + E +P +G+N Sbjct: 220 SEDRVKDIITKAVSIEQVGGSYRSMDGNKPNREVLIKDATCFCLQEFLTEALPVDLIGMN 279 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 +QY++F+A+R +GL ++ ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 280 RCLMKQYIEFVADRLFADLGLAKMYN-AENPFDFM-EAISLEGKTNFFEKRVAEYQRFGI 337 Query: 349 LK 350 + Sbjct: 338 MS 339 >gi|219126374|ref|XP_002183434.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405190|gb|EEC45134.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 296 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 82/311 (26%), Positives = 141/311 (45%), Gaps = 28/311 (9%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W E+ + DL W + L+ +ER + L FFA+S+ +V N+ Sbjct: 1 MYKKAEASFWTAEEIDLAGDLQDW---DKLSSNERHFVSHVLAFFAASDGIVNENLAGNF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161 + + E R + Q E +HS T+ +I + D E + VP + KA+W Sbjct: 58 ATEIQSAEARCFYGFQIAVENIHSETYSLLIDTYVRDAAEKDHLLHAIETVPCVQKKASW 117 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 ALQ+ DA+ + V + EG++F F I L + M G+ Sbjct: 118 ALQWC-------------DANHASFAERCVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLC 164 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I RDE LH +F + ++++ + P + ++ +A +E + + +P Sbjct: 165 FSNELISRDEGLHCDFACLLYSKLQNQLP-------VARIVEIITDAVTIEQEFVQDALP 217 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 +G+N+ +Y++F A+R +G +K NPF WM E+I L+ + NFFE RV Sbjct: 218 VELIGMNSTLMCRYIEFCADRLLVALGCPKHYKAV-NPFDWM-EMISLQGKTNFFEKRVG 275 Query: 342 EYQQGAELKWD 352 EY + + D Sbjct: 276 EYAKSGVGEKD 286 >gi|255080138|ref|XP_002503649.1| predicted protein [Micromonas sp. RCC299] gi|226518916|gb|ACO64907.1| predicted protein [Micromonas sp. RCC299] Length = 324 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 93/330 (28%), Positives = 154/330 (46%), Gaps = 29/330 (8%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 ML D L P+K W+ Y A + W E+ + D W + L D+E+ I Sbjct: 1 MLQDNEDRFCLFPIKEHAVWKMYKQAEASFWSAEEIDLSMDYKDWVT---LNDNEQHFIS 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+ L + + PE R + Q E +HS T+ +I + D Sbjct: 58 HVLAFFAASDGIVLENLGLRFMKDVQLPEARAFYAFQLAIENIHSETYGLLIDTYVKDSV 117 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + LF VP++ KA WAL++ Q+ E + V + EG++ Sbjct: 118 KKRHLFRAIHNVPTVARKAQWALKWIQS--------------SECFAERLVAFACVEGIF 163 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F I L + M G+ + I RDE LH +F + + +K + Sbjct: 164 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSMLK-------HPLDPAR 216 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + ++ +A +E + + + VG+NA +Y++F+A+R Q+G+E ++ T NPF Sbjct: 217 LQEIVKDAVDIEKEFVCDALSCALVGMNADLMSEYIEFVADRLMTQLGVEKVWN-TPNPF 275 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 WM E+I L+ + NFFE RV +YQ+ + Sbjct: 276 EWM-EMISLQGKANFFEHRVDQYQKANVMT 304 >gi|294631326|ref|ZP_06709886.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. e14] gi|292834659|gb|EFF93008.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. e14] Length = 339 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 104/322 (32%), Positives = 174/322 (54%), Gaps = 9/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A LT E+ +I R + FFA+ + Sbjct: 19 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAKLTPGEQHLIGRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + + ++ T+ + FL +L F EG++FY FA + Sbjct: 136 NIPSIREKAEFCFTWMDSVEKLDRLE-TRADRRRFLLNLICFAACIEGLFFYGAFAYVYW 194 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H++F DV++ ++ E P L+ + +Q+ ML EA Sbjct: 195 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPDLFDDQLEQQVTDMLREAVE 254 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ ++ Sbjct: 255 AELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQGVQ 312 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE R + YQ E D Sbjct: 313 ELTNFFERRPSAYQVAVEGTVD 334 >gi|295836584|ref|ZP_06823517.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB74] gi|197697282|gb|EDY44215.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB74] Length = 345 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 106/348 (30%), Positives = 179/348 (51%), Gaps = 13/348 (3%) Query: 12 AGEKRVNVDDKRMLN--ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 E + KR N L P++Y +E+Y +A N W EV + D+A Sbjct: 1 MSEPTLPEQKKRHQNLLDPGFELTLRPMRYPDFYERYRNAIKNTWTVEEVDLHSDVAD-- 58 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 LT E+ +I R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH Sbjct: 59 -LAKLTPGEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQ 117 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + ++ + D + F +PSI KA + ++ + D + FL Sbjct: 118 FYLTLLDTYLPDPDDRADAFAAVENIPSIREKAEFCFKWIDEVEKIDRLESKADR-RRFL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 +L F EG++FY FA + + G+A ++ RDE++H++F DV++ ++ Sbjct: 177 LNLICFAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVR 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+ E +Q+ + ML A E+ +A + G G+N S +Y+Q +A++R + Sbjct: 237 KEEPELFDAELEQEVKDMLDGAVNAELQFARDLCGDGLPGMNTESMREYLQCVADQRLQR 296 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352 +G P++ + NPF +M E+ +++ NFFE R + YQ + +D Sbjct: 297 LGFAPVYG-SSNPFSFM-ELQGVQELTNFFERRPSAYQVAVEGSVSFD 342 >gi|18311342|ref|NP_563276.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium perfringens str. 13] gi|110801267|ref|YP_697050.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium perfringens ATCC 13124] gi|168205189|ref|ZP_02631194.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens E str. JGS1987] gi|168210336|ref|ZP_02635961.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens B str. ATCC 3626] gi|168213271|ref|ZP_02638896.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens CPE str. F4969] gi|168216675|ref|ZP_02642300.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens NCTC 8239] gi|169347055|ref|ZP_02865997.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens C str. JGS1495] gi|182625797|ref|ZP_02953564.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens D str. JGS1721] gi|18146026|dbj|BAB82066.1| ribonucleoside-diphosphate reductase beta subunit [Clostridium perfringens str. 13] gi|110675914|gb|ABG84901.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens ATCC 13124] gi|169296738|gb|EDS78867.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens C str. JGS1495] gi|170663363|gb|EDT16046.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens E str. JGS1987] gi|170711548|gb|EDT23730.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens B str. ATCC 3626] gi|170715235|gb|EDT27417.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens CPE str. F4969] gi|177908953|gb|EDT71440.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens D str. JGS1721] gi|182381151|gb|EDT78630.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens NCTC 8239] Length = 344 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 105/347 (30%), Positives = 170/347 (48%), Gaps = 13/347 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + + K+M+N + ++N +KY W E Y A NN W+P E+ + DL Sbjct: 7 PLFNEFGDIETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKD 66 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +K LT +E+ + L F +S+ N+ I +++ E L QAF+EAVH Sbjct: 67 YK---KLTKEEKTAYDKILSFLIFLDSIQTANL-GNINSYITASEVNLCLTIQAFQEAVH 122 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y++ S+ E R K + L + +D+ E Sbjct: 123 SQSYSYMLDSICSPEE------RNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSMENFI 176 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL +I ++K Sbjct: 177 KSVMANYILEGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKE 236 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P ++TKE +++ R M+ EIA+ H + G+N E+Y+++I N R I Sbjct: 237 EIPEVFTKELKEELREMVRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRVKAI 296 Query: 308 GLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 GLEPLF+ Y ENP PW+ D + + +FFE + T Y + L D Sbjct: 297 GLEPLFEGYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGALIDD 343 >gi|307328555|ref|ZP_07607729.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger Tu 4113] gi|306885823|gb|EFN16835.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger Tu 4113] Length = 340 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 102/320 (31%), Positives = 173/320 (54%), Gaps = 9/320 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +++Y A N W EV + D+ L+ E+ +I R + FFA+ + Sbjct: 20 LRPMRYPEFYDRYRDAIKNTWTVEEVDLHSDVTD---LAKLSPGEQHLIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 77 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 136 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ TK + FL +L F EG++FY FA + Sbjct: 137 NIPSIREKAEFCFRWMDSVEKIDRLE-TKQDRRRFLLNLICFAACIEGLFFYGAFAYVYW 195 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F V++ ++ E P L+ E +Q+ ML EA Sbjct: 196 LRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVREEEPDLFDDELRQQVTDMLKEAVE 255 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + G G+N S ++Y+Q +A++R ++G +F +ENPF +M E+ +++ Sbjct: 256 AELQFARDLCGDGLPGMNTASMQEYLQCVADQRLMRLGFPAVFG-SENPFSFM-ELQNVQ 313 Query: 331 KEKNFFETRVTEYQQGAELK 350 + NFFE R + YQ E Sbjct: 314 ELTNFFERRASAYQVAVEGS 333 >gi|15896521|ref|NP_349870.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium acetobutylicum ATCC 824] gi|15026352|gb|AAK81210.1|AE007823_4 Ribonucleotide reductase beta subunit [Clostridium acetobutylicum ATCC 824] gi|325510679|gb|ADZ22315.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium acetobutylicum EA 2018] Length = 344 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 164/347 (47%), Gaps = 13/347 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ K+++N + ++N +KY W + Y NN W+P E+ + DL Sbjct: 7 PLFNENGDTETSKKKIVNGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEINLSQDLKD 66 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + LTD+ER + L F +S+ N+ I +++ E L QAF+EAVH Sbjct: 67 Y---GKLTDNERTAYDKILSFLIFLDSVQTANL-GNINDYITASEVNLCLTIQAFQEAVH 122 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y++ ++ E R K + L + ++ E Sbjct: 123 SQSYSYMLDTICSPEK------RNEILFQWKDDEVLLSRNKFIGDIYNNFVEEPSDENFL 176 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++ Sbjct: 177 KAIMGNYVLEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQK 236 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P ++T+E +++ + M+ EI + H + G+N E Y++++ NRR I Sbjct: 237 EEPDMFTEEIKKELKDMVKTGVENEITWGHYVIGDNIQGINKKLIEDYIKYLGNRRLEAI 296 Query: 308 GLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 G EP+++ Y ENP W+ D + +FFE + T Y + + L D Sbjct: 297 GFEPIYEGYDENPALWVDIYADANSVKTDFFEAKSTAYAKASTLVDD 343 >gi|256785295|ref|ZP_05523726.1| ribonucleotide-diphosphate reductase small chain [Streptomyces lividans TK24] gi|289769189|ref|ZP_06528567.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces lividans TK24] gi|289699388|gb|EFD66817.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces lividans TK24] Length = 343 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 108/342 (31%), Positives = 185/342 (54%), Gaps = 10/342 (2%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E V+ K +L+ ++ L P++Y +E+Y A N W EV + D+A Sbjct: 4 ETPVHPTTKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAK 59 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L+ E+ +I R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + Sbjct: 60 LSPMEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLT 119 Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 ++ + D + F +PSI KA + ++ ++ S TK + FL +L Sbjct: 120 LLDTYLPDPEDRAAAFAAVENIPSIREKAEFCFRWMDSVESIDRLE-TKADRRRFLLNLI 178 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 F EG++FY FA + + G+A ++ RDE++H++F DV++ ++ E P Sbjct: 179 CFAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEP 238 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 L+ + +++ ML EA E+ +A + G G+N S QY++ +A++R ++G Sbjct: 239 ELFDDQLREQVTDMLREAVEAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFA 298 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 P++ +ENPF +M E+ +++ NFFE R + YQ E D Sbjct: 299 PVYG-SENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGTVD 338 >gi|89890041|ref|ZP_01201552.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria bacterium BBFL7] gi|89518314|gb|EAS20970.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria bacterium BBFL7] Length = 330 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 86/337 (25%), Positives = 156/337 (46%), Gaps = 28/337 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + + +L D + P+++ WE Y W E+ +Q D+ W+ N L Sbjct: 1 MQTTQEPILQENPDRFVIFPIQHDDLWEWYKKQQACIWTAEEIDLQVDITDWQ--NSLNS 58 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DER IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I Sbjct: 59 DERYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLID 118 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + D+ E F P+I KA+WA+++ ++ + + + Sbjct: 119 TYVKDDAEKDQLFRAIENFPAIKLKADWAMKWIES---------------PSFAERLIAF 163 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F F I L + M G+ + I RDE +H +F + + N HL Sbjct: 164 AAVEGIFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGMHCDFAVHL------HNHHLV 217 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 K +++ ++ +A +E + E++P +G+NA QY++F+ +R ++ +P++ Sbjct: 218 NKVPKERITEIIVDALNIEREFITESLPASLIGMNAKLMTQYLEFVTDRLLGELECDPVY 277 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 T NPF +M +I ++ + NFFE RV EYQ+ + Sbjct: 278 NVT-NPFDFMD-LIGMEGKTNFFEKRVGEYQKAGVMN 312 >gi|297192180|ref|ZP_06909578.1| ribonucleoside-diphosphate reductase subunit beta protein [Streptomyces pristinaespiralis ATCC 25486] gi|197720175|gb|EDY64083.1| ribonucleoside-diphosphate reductase subunit beta protein [Streptomyces pristinaespiralis ATCC 25486] Length = 340 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 103/320 (32%), Positives = 175/320 (54%), Gaps = 9/320 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 20 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 77 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVE 136 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA++ ++ ++ S D + FL +L F EG++FY FA + Sbjct: 137 NIPSIREKASFCFKWMDSVESIDRLETQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 195 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H+NF +V++ ++ E P L+ E +Q+ ML EA Sbjct: 196 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDELRQQVTDMLKEAVE 255 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ + + +G G+N S +Y+Q +A++R ++G P++ ++NPF +M E+ ++ Sbjct: 256 AELQFGRDLCGEGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SQNPFSFM-ELQGVQ 313 Query: 331 KEKNFFETRVTEYQQGAELK 350 + NFFE R + YQ E Sbjct: 314 ELTNFFERRPSAYQVAVEGS 333 >gi|194319980|pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B gi|194319981|pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B Length = 326 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 88/327 (26%), Positives = 149/327 (45%), Gaps = 28/327 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E + +++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 25 DTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 82 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 83 -NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 141 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + Sbjct: 142 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD-------------RKSTFG 188 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 189 ERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 245 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K +++ R ++ +A +E + E +P G +G+N +QY++F+A+R ++ Sbjct: 246 ----LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVEL 301 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKN 334 G +F+ ENPF +M E I L+ + N Sbjct: 302 GFSKVFQ-AENPFDFM-ENISLEGKTN 326 >gi|21223593|ref|NP_629372.1| ribonucleotide-diphosphate reductase small chain [Streptomyces coelicolor A3(2)] gi|7328345|emb|CAB82486.1| class I ribonucleotide-diphosphate reductase small subunit chain [Streptomyces coelicolor A3(2)] gi|8546891|emb|CAB94610.1| ribonucleotide-diphosphate reductase small chain [Streptomyces coelicolor A3(2)] Length = 343 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 104/322 (32%), Positives = 176/322 (54%), Gaps = 9/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+ + Sbjct: 23 LRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAKLSPMEQHLIGRLVAFFATGD 79 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 80 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFAAVE 139 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ S TK + FL +L F EG++FY FA + Sbjct: 140 NIPSIREKAEFCFRWMDSVESIDRLE-TKADRRRFLLNLICFAACIEGLFFYGAFAYVYW 198 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H++F DV++ ++ E P L+ + +++ ML EA Sbjct: 199 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLREQVTDMLREAVE 258 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ ++ Sbjct: 259 AELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQGVQ 316 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE R + YQ E D Sbjct: 317 ELTNFFERRPSAYQVAVEGTVD 338 >gi|284043177|ref|YP_003393517.1| ribonucleoside-diphosphate reductase [Conexibacter woesei DSM 14684] gi|283947398|gb|ADB50142.1| Ribonucleoside-diphosphate reductase [Conexibacter woesei DSM 14684] Length = 364 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 118/328 (35%), Positives = 194/328 (59%), Gaps = 2/328 (0%) Query: 23 RMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 R++ R + LLPL+YGWA+E Y + NHW P +V M D+ W+ + L++ +R + Sbjct: 30 RVVGGRETMTFNLLPLRYGWAYELYRTMKANHWEPEDVQMAKDIEQWRDERALSEIDRWI 89 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 ++ +G+F+++E +V +NI+ + ++ E + L R A EE +H+ + Y+I+SLG+D Sbjct: 90 VRMAIGYFSAAEGIVGDNILHVVRELMTASELKLVLGRHAHEENIHADSLLYMISSLGID 149 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 E M+ ++P+I AK + +Q L + +++F+F EG F Sbjct: 150 PHECEAMFDDIPTIRAKNAFVTSASQALRRD-LDMQDPRSVALLAKNIFLFGQCMEGTQF 208 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y F +LSL R K+ GI ++Y +RDES H+ ++ ++ ENP +WT EF+ + Sbjct: 209 YGLFGMVLSLYRQGKLPGIGTMFRYTLRDESNHIELFRRLLRELVAENPEIWTAEFRDEL 268 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 R ++ EA LE + + +P VGLNA QY+ +IA+RR +GLEPL ENP P Sbjct: 269 RELMREAVALEQRFIDDCLPVEGVGLNADEFAQYIDYIADRRLEGVGLEPLKPGVENPLP 328 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349 W++E++D++KE+NFFE RVTEYQ+ + L Sbjct: 329 WLAELMDVRKEQNFFEGRVTEYQKASAL 356 >gi|10344|emb|CAA26307.1| unnamed protein product [Spisula solidissima] Length = 300 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 88/309 (28%), Positives = 143/309 (46%), Gaps = 28/309 (9%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + D+A W+S L +E+ I L FFA+S+ +V N+V Sbjct: 1 MYKKAEASFWTAEEVDLSKDMAHWES---LKKEEKHFISHVLAFFAASDGIVNENLVERF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161 + + E R + Q E +HS + +I + D E FN +P + KA+W Sbjct: 58 SKEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADW 117 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 A+++ D + V + EG++F FA I L + M G+ Sbjct: 118 AMRWIND-------------DSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLT 164 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I RDE LH +F + + HL K Q++ ++ EA +E + E +P Sbjct: 165 FSNELISRDEGLHCDFACLMFS-------HLVNKPSQERIHQIIDEAVKIEQVFLTEALP 217 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 +G+N QY++F+A+R ++ + L+ ENPF +M E I L+ + NFFE RV Sbjct: 218 CRLIGMNCDLMRQYIEFVADRLLLELKCDKLYN-KENPFDFM-EHISLEGKTNFFEKRVG 275 Query: 342 EYQQGAELK 350 EYQ+ + Sbjct: 276 EYQKMGVMS 284 >gi|238061574|ref|ZP_04606283.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC 39149] gi|237883385|gb|EEP72213.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC 39149] Length = 344 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 112/344 (32%), Positives = 186/344 (54%), Gaps = 11/344 (3%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +D + L L P++Y ++++ A N W EV + DLA Sbjct: 4 TSEPRLDTRHTLLDPGMDLTLRPMRYPHFFDRFKDAIKNTWTVEEVDLHSDLAD---LAR 60 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L+ ER ++ R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH + Sbjct: 61 LSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLN 120 Query: 134 IITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 ++ + DE E F + +PSI KA + ++ ++ T++ + FL +L Sbjct: 121 LLDTYVPDERERFAAFAAIENIPSIRRKAEFCFRWIDSIF-ELRELKTREDRRAFLLNLI 179 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 F EG++FY FA + L + G+A ++ RDES+H+ F DV++ ++ E P Sbjct: 180 CFAACIEGLFFYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTVRHEEP 239 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 L+ E ++ R ML EA E +A + + +G GL+ QY+Q +A+RR Q+G+ Sbjct: 240 DLFDDELARQVREMLAEAVECEAQFAEDLLEQGVSGLSLDDMRQYLQHVADRRLAQLGIA 299 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352 PL+ + NPF +M E+ D+++ NFFE RV+ YQ G + +D Sbjct: 300 PLYG-SANPFAFM-ELQDVQELSNFFERRVSAYQVGVTGSVTFD 341 >gi|255724924|ref|XP_002547391.1| ribonucleoside-diphosphate reductase small chain 1 [Candida tropicalis MYA-3404] gi|240135282|gb|EER34836.1| ribonucleoside-diphosphate reductase small chain 1 [Candida tropicalis MYA-3404] Length = 387 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 87/333 (26%), Positives = 147/333 (44%), Gaps = 27/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + P+KY W Y + + W E+ + D W+ N + DER Sbjct: 63 NEPLLREDPSRRTVFPIKYPEIWTFYKKSVASFWTAEEIDLSKDFDDWE--NKMNKDERF 120 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + Q E +HS T+ +I + Sbjct: 121 FISRVLAFFAASDGIVNENLVENFCTEVKLPEAKSVYKFQIMMENIHSETYSLLIETYFK 180 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN + I KA+WA+++ Q ++ + V + E Sbjct: 181 DPKEADFLFNAIDNIKYIGEKADWAIRWIQD-------------EEALFAERLVAFAAIE 227 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE +H ++ + + L K Sbjct: 228 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGIHTDYACLLFSY-------LENKPD 280 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ EA +E Y + +P +G+N QY+++ A+R G + + T Sbjct: 281 PSIIEKIITEAVSIEKKYFSDALPVSLLGMNCDLMCQYVEYCADRLLVAFGNDKYYNVT- 339 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E I L + NFFE RV++YQ+ ++ Sbjct: 340 NPFDFM-ENISLAGKTNFFEKRVSDYQRAGVME 371 >gi|73974200|ref|XP_858061.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53 inducible) isoform 3 [Canis familiaris] Length = 338 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 95/342 (27%), Positives = 151/342 (44%), Gaps = 41/342 (11%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E V D++ +L S + P++Y W+ Y A + W EV + DL W Sbjct: 21 DTNENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 79 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + +I + D + FN +P + KA+WAL++ + + Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWI-------------EDRKSTFG 184 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQY--- 241 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 L K +++ R ++ A +E + E +P G +G+N +QY++F+ Sbjct: 242 ----LVNKPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVFQ------ 291 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 ENPF +M E I L+ + NFFE RV EYQ+ A + Sbjct: 292 --------AENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 324 >gi|319953269|ref|YP_004164536.1| ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM 14237] gi|319421929|gb|ADV49038.1| Ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM 14237] Length = 326 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 88/334 (26%), Positives = 154/334 (46%), Gaps = 28/334 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+++ WE Y W E+ + +D W N L DDER Sbjct: 5 EPILQENKDRFVIFPIQHNDLWEWYKKQEACIWTAEEIDLSEDANDWN--NKLNDDERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F P+I KA+WAL++ D + + + EG Sbjct: 123 EKEKTVLFQAIENFPAIKKKADWALKWI---------------DSPSFAERLIAFAAVEG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + N H+ + + Sbjct: 168 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHL------HNKHIINQVPK 221 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ +L +A +E + E++P +G+N+ QY++F+ +R ++ + ++ T N Sbjct: 222 ERITEILVDALNIEREFITESLPASLIGMNSKLMTQYLEFVTDRLLVELECDKVYNST-N 280 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PF +M +I ++ + NFFE RV+EYQ+ L D Sbjct: 281 PFDFMD-MIGMEGKTNFFEKRVSEYQKAGVLNSD 313 >gi|110802082|ref|YP_699620.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium perfringens SM101] gi|110682583|gb|ABG85953.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium perfringens SM101] Length = 344 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 105/347 (30%), Positives = 170/347 (48%), Gaps = 13/347 (3%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + + K+M+N + ++N +KY W E Y A NN W+P E+ + DL Sbjct: 7 PLFNEFGDIETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKD 66 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +K LT +E+ + L F +S+ N+ I +++ E L QAF+EAVH Sbjct: 67 YK---KLTKEEKAAYDKILSFLIFLDSIQTANL-GNINSYITASEVNLCLTIQAFQEAVH 122 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y++ S+ E R K + L + +D+ E Sbjct: 123 SQSYSYMLDSICSPEE------RNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSIENFI 176 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL +I ++K Sbjct: 177 KSVMANYILEGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKE 236 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P ++TKE +++ R M+ EIA+ H + G+N E+Y+++I N R I Sbjct: 237 EIPEVFTKELKEELREMMRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRAKAI 296 Query: 308 GLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 GLEPLF+ Y ENP PW+ D + + +FFE + T Y + L D Sbjct: 297 GLEPLFEGYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGALIDD 343 >gi|40556174|ref|NP_955259.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus] gi|40233999|gb|AAR83582.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus] Length = 323 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 89/335 (26%), Positives = 148/335 (44%), Gaps = 28/335 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + + +L D + P+++G W Y A + W EV + DL WK+ L +E Sbjct: 1 MSSEPLLVNNPDRFVIFPIQHGDIWRMYKQAVASFWTVEEVDLSYDLIDWKN---LKPEE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA S+ +V N+V + + PE R + Q E +HS + +I + Sbjct: 58 RRFISYILAFFAVSDGIVNENLVEKFCQEVQIPEARCFYGFQIAIENIHSEMYSLLIDTY 117 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D E F+ R + + K+ WAL++ D + V + Sbjct: 118 IDDNNEKKRLFSSMRTMDCVRKKSEWALKWIN--------------DSAPYGERLVAFAA 163 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + M G+ + I RDE LH +F + L K Sbjct: 164 VEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFTNY------LSHK 217 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 Q + ++ A +E + E + +G+N+ S +Y++F+++R +G + Sbjct: 218 PSQDRVYEIIDSAVSVETEFLTEALSIDLIGMNSKSMIEYIKFVSDRLLVSLGFSKKYNV 277 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ENPF +M E I L+ + NFFE RV+ YQ+ + Sbjct: 278 -ENPFSFM-ENISLEGKANFFEKRVSNYQKMGVMS 310 >gi|254449372|ref|ZP_05062814.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium HTCC5015] gi|198261018|gb|EDY85321.1| ribonucleoside-diphosphate reductase, beta subunit [gamma proteobacterium HTCC5015] Length = 404 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 136/351 (38%), Positives = 194/351 (55%), Gaps = 5/351 (1%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + T + + G V +DK+++N +D+NQL P KY WAWE +L+A NHW P ++ Sbjct: 59 IPEQTNAAQMSGGVNPVKAEDKKVVNGMADINQLAPFKYPWAWEYFLNANKNHWTPLDIN 118 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ + + LT +ER + L + +S+ + NI LA+ +S PE + Y RQ Sbjct: 119 MAQDVHDFH--HKLTLEERHVYTNVLSYLTTSDIMAMRNIGLAVMEKMSAPELQIYQARQ 176 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +EE++H+ T+Q+ I +LGLD+GE++N YR VP I AK A + ++ P +D Sbjct: 177 VYEESLHTWTYQHCIETLGLDQGEVYNRYRVVPEINAKIQIANRRLNSVMRPDIDLNDRD 236 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 FL F +FEG WFY GF+ I +L R M G AEQ QYIMRDE +H +FG+ Sbjct: 237 ELHNFLMSYIFFAGIFEGCWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHASFGLR 296 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 V QI E + + R M E E YA + +G +A +FIA Sbjct: 297 VARQIMREEN---IQPDPKAMREMWDECEAAEEGYARYLLRDPILGYSAEDHVNQFRFIA 353 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 NRR +++ LE F EN PW+ E +++KEKNFFETRVTEYQ G L W Sbjct: 354 NRRANKLSLEEPFPGAENALPWLDEQANMRKEKNFFETRVTEYQVGGGLTW 404 >gi|323453718|gb|EGB09589.1| hypothetical protein AURANDRAFT_60022 [Aureococcus anophagefferens] Length = 393 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 148/322 (45%), Gaps = 27/322 (8%) Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 S L P+K W Y A + W EV + D W+ L + ER + R L Sbjct: 78 DSSRFTLFPIKDAGLWAMYKRAEASFWTAEEVDLGQDKQHWEQ---LDEGERYFLSRVLA 134 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 FFA+S+ +V N+V + ++ PE R + Q E VH + ++ + D GE Sbjct: 135 FFAASDGIVLENLVERFAQEVTLPEARFFYAFQGAIEGVHQEMYSLLLETYVEDPGEREA 194 Query: 148 MYREV---PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 + R P + AKA+WA+++T + D + L F V EG++F Sbjct: 195 LTRAHDLMPCVKAKADWAMKWTAS-------------DAPYAARLLAFAAV-EGVFFSGS 240 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 F I L + + G+ + I RDE LH +F + +++ + ++ + Sbjct: 241 FCAIFWLRKRGILPGLGFANELISRDEGLHCDFACALYSRLPGHL-----RLSDAEATAI 295 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 + EA E+ + + +P VG+NA Y++F+A+R +G ++ NPF +M Sbjct: 296 ISEAVDTEVDFVTDALPVSLVGMNAKLMTDYVKFVADRLLASLGHPKIYGAA-NPFDFM- 353 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 E+I ++ + NFFE RV EYQ+ Sbjct: 354 ELISMQGKTNFFEKRVAEYQKA 375 >gi|312075738|ref|XP_003140550.1| ribonucleotide reductase M2 B [Loa loa] gi|307764288|gb|EFO23522.1| ribonucleotide reductase M2 B [Loa loa] Length = 350 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 91/336 (27%), Positives = 151/336 (44%), Gaps = 37/336 (11%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 R + + +L + + P+K+ W+ Y A + W EV + D W++ Sbjct: 38 TSRCESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDWEN--- 94 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L D ER I R L FFA+S+ +V N+V + + PE R + Q E VHS Sbjct: 95 LNDGERHFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENVHSEM--- 151 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 LFN E + KA+WAL + + +P + + + Sbjct: 152 ---------SLLFNAIYEFEFVKKKADWALCWIADIKAP-------------YAERLIAF 189 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F FA I L + M G+ + I RDE LH +F + IK Sbjct: 190 AAVEGIFFSGSFAAIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYTYIK------- 242 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 K +++ ++ EA +E Y E +P +G+N QY++++A+ ++ ++ Sbjct: 243 NKPSEERIYQIIREAVDIEKEYLTEALPVDLIGINCKLMCQYIEYVADHLLTELHCAKMY 302 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 Y++NPF +M E I ++ + NFFE RV+EYQ+ L Sbjct: 303 -YSDNPFDFM-ERISIEAKTNFFEKRVSEYQKAGVL 336 >gi|156102402|ref|XP_001616894.1| ribonucleoside-diphosphate reductase small chain [Plasmodium vivax SaI-1] gi|148805768|gb|EDL47167.1| ribonucleoside-diphosphate reductase small chain, putative [Plasmodium vivax] Length = 349 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 161/338 (47%), Gaps = 29/338 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++++L+ +D L P+ Y W+ Y A + W E+ + DL ++ L Sbjct: 24 QKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE---KL 80 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D+E+ IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ + Sbjct: 81 NDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLL 140 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + DE E F+ +P++ KA WA ++ D + V Sbjct: 141 IDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWIN--------------DTNSFAERIV 186 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 EG+ F F I + NK+ G+ + I RDE LH +F + + ++ + P Sbjct: 187 ANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE 246 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G Sbjct: 247 -------EVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPK 299 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +F + +NPF WM +I L+ + NFFE RV +YQ+ + Sbjct: 300 IF-HAKNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335 >gi|224007863|ref|XP_002292891.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971753|gb|EED90087.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 297 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 82/307 (26%), Positives = 138/307 (44%), Gaps = 28/307 (9%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W E+ + +DL W + LT +ER + L FFA+S+ +V N+ Sbjct: 1 MYKKAEASFWTAEEIDLAEDLKDW---DALTANERHFVSHILAFFAASDGIVNENLTGNF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161 +++PE R + Q E +HS T+ +I + D E N VP + KA+W Sbjct: 58 STEVTSPEARCFYGFQIAVENIHSETYSLLIDTYIKDSTEKNHLLNAIETVPCVQKKAHW 117 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 AL++ DA + + + EG++F F I L + M G+ Sbjct: 118 ALKWC-------------DAGNASFAERMIAFAAVEGIFFSGSFCAIFWLKKRGLMPGLC 164 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I RDE LH +F + +++ + P + ++ A +E + + +P Sbjct: 165 FSNELISRDEGLHCDFACLLYSKLVNKLPE-------SRITKIITVAVEIEKEFVSDALP 217 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 +G+N+ Y++F A+R +G + T NPF WM E+I L+ + NFFE RV Sbjct: 218 VELIGMNSKLMCDYIEFCADRLLGALGCSKFYNAT-NPFEWM-EMISLQGKTNFFEKRVG 275 Query: 342 EYQQGAE 348 EY + Sbjct: 276 EYAKSGV 282 >gi|167760514|ref|ZP_02432641.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704] gi|167661880|gb|EDS06010.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704] Length = 347 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ V+ +RM+ + ++N +KY W + Y A NN W+P E+ M D+ Sbjct: 7 KPLFNPSGDTQVNKRRMIGGNTTNLNDFNNMKYDWVSDWYRQAMNNFWIPEEINMGVDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L ER + L F +S+ N+ I +++ E L Q F+EAV Sbjct: 67 DYR---KLPQAERRAYDKILSFLIFLDSIQTANL-PNIGEYITANEVNLCLSIQTFQEAV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ + R K + L + K D L Sbjct: 123 HSQSYSYMLDTICEPQE------RNDVLYQWKEDQHLLKRNEFIGNLYNEFQKKKDAGVL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++FY+GF +LGR N+M G ++ +YI RDE+ HL +++ ++K Sbjct: 177 VKTLVANYILEGIYFYSGFMFFYNLGRNNRMPGSVQEIRYINRDENTHLWLFRNILLELK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T+ ++ R M+ E EI++ H + GLN Y+Q++ N RC Sbjct: 237 KEEPQLFTESRIEEYREMIKEGCQQEISWGHYVIGDDIQGLNRDMVTDYIQYLGNLRCTN 296 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G P+++ + + P W+S+ + + +FFE R T Y + + L D Sbjct: 297 LGFAPIYEGHVKEPDSMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346 >gi|120437796|ref|YP_863482.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii KT0803] gi|117579946|emb|CAL68415.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii KT0803] Length = 325 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 89/334 (26%), Positives = 159/334 (47%), Gaps = 28/334 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+K+ W+ Y W E+ + +DL+ W N L+ DER Sbjct: 5 EPILQENKDRFVIFPIKHHDIWDWYKKMEACFWTAEEIDLHEDLSDWN--NKLSADERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 +K L FFA+S+ +V N+ + E + + Q E +HS T+ +I + + Sbjct: 63 LKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKN 122 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F P+I KA+WAL++ ++ + + + + EG Sbjct: 123 EKEKDQLFKAIEVFPAIKKKADWALKWIES---------------DSFAERLIAFAAVEG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + N HL + + Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHL------HNQHLVNQVPK 221 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 +K R +L +A +E + E++P +G+NA QY++F+ +R ++ E + + N Sbjct: 222 EKIREILIDALNIEREFVTESLPVSLIGMNAKLMTQYLEFVTDRLLVELDCEKEYNVS-N 280 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PF +M +I+L+ + NFFE RV+EYQ+ + D Sbjct: 281 PFDFMD-MINLQGKTNFFEKRVSEYQKAGVMNKD 313 >gi|221060582|ref|XP_002260936.1| ribonucleotide reductase small subunit [Plasmodium knowlesi strain H] gi|193811010|emb|CAQ42908.1| ribonucleotide reductase small subunit,putative [Plasmodium knowlesi strain H] Length = 349 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 87/345 (25%), Positives = 162/345 (46%), Gaps = 29/345 (8%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + ++ ++++L+ +D L P+ Y W+ Y A + W E+ + DL Sbjct: 17 EKAFSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKD 76 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 ++ L ++E+ IK L FFA+S+ +V N+ R + E +++ Q E +H Sbjct: 77 FE---KLNENEKHFIKHVLAFFAASDGIVLENLASKFLRQVQITEAKKFYSFQIAVENIH 133 Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 S T+ +I + DE E F+ +P++ KA WA ++ D Sbjct: 134 SETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWIN--------------DTN 179 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V EG+ F F I + NK+ G+ + I RDE LH +F + + Sbjct: 180 SFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSL 239 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 ++ + P + + ++ EA +E ++ E++P +G+N+ QY++F+A+R Sbjct: 240 LENKLPE-------EVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLL 292 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G +F + +NPF WM +I L+ + NFFE RV +YQ+ + Sbjct: 293 ECLGSRKIF-HAKNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335 >gi|302542646|ref|ZP_07294988.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces hygroscopicus ATCC 53653] gi|302460264|gb|EFL23357.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces himastatinicus ATCC 53653] Length = 343 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 101/324 (31%), Positives = 173/324 (53%), Gaps = 11/324 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +++Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 23 LRPMRYPQFYDRYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMISRLVAFFATGD 79 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 80 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAASFAAVE 139 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ D + FL +L F EG++FY FA + Sbjct: 140 NIPSIREKAEFCFRWMDSVEKIDRLESKADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 198 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDES+H+ F V++ ++ E P L+ + +++ ML EA Sbjct: 199 FRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVREEEPDLFDDDLERQVTDMLKEAVE 258 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +AH+ G G+N S Y++ +A++R ++G +F +ENPF +M E+ D++ Sbjct: 259 AELQFAHDLCGDGLPGMNTESMRAYLECVADQRLARLGFPAVFG-SENPFSFM-ELQDVQ 316 Query: 331 KEKNFFETRVTEYQQG--AELKWD 352 + NFFE R + YQ + +D Sbjct: 317 ELTNFFERRASAYQVAVEGSVSFD 340 >gi|331086748|ref|ZP_08335825.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409914|gb|EGG89349.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 9_1_43BFAA] Length = 347 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 166/350 (47%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ V +R++ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPAGDTEVRLRRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVR 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ L ER + L F +S+ N+ I +++ E L QAF+EAV Sbjct: 67 DYRT---LPAPERRAYDKILSFLVFLDSIQTANL-PNISEYITANEVNLCLSIQAFQEAV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ + R K + L + ++ E Sbjct: 123 HSQSYSYMLDTICEPQE------RNKVLYQWKDDPHLLSRNEFIGNLYNEFQREKSLEAF 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +++ +++ Sbjct: 177 VRTMIANYILEGIYFYSGFMFFYNLGRNQKMTGSVQEIRYINRDENTHLWLFTNILRELR 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+++E +++ R M+ E EIA+ H + GL+ Y++++ N RC Sbjct: 237 KELPELFSEEKEKEYRQMIREGCEQEIAWGHYVIGDAVSGLSCDMITDYVKYLGNLRCKN 296 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +GL P+++ + + P W+S+ + + +FFE + T Y + + L D Sbjct: 297 LGLAPIYEGHEKEPESMGWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 346 >gi|159040364|ref|YP_001539617.1| ribonucleoside-diphosphate reductase [Salinispora arenicola CNS-205] gi|157919199|gb|ABW00627.1| Ribonucleoside-diphosphate reductase [Salinispora arenicola CNS-205] Length = 350 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 110/356 (30%), Positives = 192/356 (53%), Gaps = 18/356 (5%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A ++ GE+ + +D L L P++Y ++++ A N W EV + Sbjct: 5 AETRTVTAATTGERHMLLDPGMDL-------TLRPMRYPHFFDRFKEAIKNTWTVEEVDL 57 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DLA L+ ER ++ R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ Sbjct: 58 HSDLAD---LAKLSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQL 114 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGT 178 FEEAVH + ++ + DE E F + +PSI KA + ++ ++ T Sbjct: 115 FEEAVHVQFYLNLLDTYVPDEKERFAAFAAVENIPSIARKAEFCFRWIDSIF-ELRELRT 173 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + + FL +L F EG++FY FA + L + G+A ++ RDES+H+ F Sbjct: 174 RADRRAFLLNLICFAACIEGLFFYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFA 233 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 DV++ I+ E P L+ + +++ + M+ EA E +A + + +G GL+ +Y+Q Sbjct: 234 FDVVDTIRAEEPDLFDADLERQIKDMVTEAVDCEAQFAEDLLEQGVSGLSLADMREYLQH 293 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352 +A+RR +G+ P++ ++NPF +M E+ D+++ NFFE RV+ YQ G + +D Sbjct: 294 VADRRLVTLGIAPIYG-SQNPFAFM-ELQDVQELSNFFERRVSAYQVGVSGSVTFD 347 >gi|120556760|ref|YP_961111.1| ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8] gi|120326609|gb|ABM20924.1| Ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8] Length = 352 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 137/344 (39%), Positives = 194/344 (56%), Gaps = 5/344 (1%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + G VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M D+ Sbjct: 14 AAATGGPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHD 73 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + + LT E+ + + L + +S+ L NI LA+ +S PE + Y RQ +EEA+H Sbjct: 74 YHHR--LTPAEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALH 131 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 + T+Q+ I +L LD+ E++N YR VP I K A + D Q+F+ Sbjct: 132 TWTYQHCIETLNLDQSEIYNRYRVVPEINGKIQLANRRLDAAMRSDMNLRNPDELQDFVM 191 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 F VFEG WFY GF+ I +L R M G EQ QYI+RDE++H +FG+ V+NQI Sbjct: 192 SYLFFAAVFEGCWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQILE 251 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E + R M E+ E+AYA+ + +G +A + +F+ANRR + Sbjct: 252 EEKITLDP---KAVREMWDESEAAEMAYANYVLRDPILGYSAEYHSEQFRFVANRRARTV 308 Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 GLE F +N PW+ E L+KEKNFFETRV EYQ GA+L+W Sbjct: 309 GLEEPFPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352 >gi|211956300|ref|YP_002302368.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84] gi|115503095|gb|ABI99013.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84] Length = 321 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 89/332 (26%), Positives = 146/332 (43%), Gaps = 28/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L ++ + P+ Y W Y A + W EV + DL WK LTD+ER Sbjct: 2 EPLLVESNNRFVIFPIVYNDIWIMYKKAVASFWTTEEVDLSKDLLDWK---KLTDNERYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + D Sbjct: 59 IKNILAFFAASDGIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E + + KA WA ++ + + V + EG Sbjct: 119 VDEKNHLLKAIDTIDCVKEKAKWAEKWI-------------LDKESSYGERLVAFAAVEG 165 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + L Sbjct: 166 IFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------QLLHPPNP 218 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + ++ EA +E ++ +P +G+N QY++F+A+R ++G +FK +EN Sbjct: 219 SRIINIIVEAVSIEKSFLTTALPVKLIGMNCELMCQYIEFVADRLLSELGCTKIFK-SEN 277 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV++YQ+ + Sbjct: 278 PFDFM-ESISLEGKTNFFEKRVSDYQKMGIMS 308 >gi|311696539|gb|ADP99412.1| ribonucleotide-diphosphate reductase beta subunit [marine bacterium HP15] Length = 352 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 138/349 (39%), Positives = 194/349 (55%), Gaps = 5/349 (1%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M Sbjct: 9 KTESRAAHPGAPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMA 68 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ + + LT E+ + + L + +S+ L NI LA+ +S PE + Y RQ + Sbjct: 69 QDVHDYHHR--LTAPEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVY 126 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEA+H+ +Q+ I +L LD+ E++N YR VP+I K A + P KD Sbjct: 127 EEAMHTWAYQHCIETLNLDQSEIYNRYRVVPAINGKIQIANRRLDAAMRPDMNLRNKDDL 186 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 QEF+ F VFEG WFY GF+ I +L R M G EQ QYI+RDE++H +FG+ V+ Sbjct: 187 QEFIMSYLFFAAVFEGTWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVV 246 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 NQI E + + R M E+ E AYA + +G +A + +F+ANR Sbjct: 247 NQIVEEENITFDP---KAVREMWDESEAAEKAYADYILRDPILGYSAEYHSEQFRFVANR 303 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 R +GLE F +N PW+ E L+KEKNFFETRV EYQ GA+L+W Sbjct: 304 RARTVGLEEPFPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352 >gi|325663145|ref|ZP_08151595.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 4_1_37FAA] gi|325470599|gb|EGC73829.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 4_1_37FAA] Length = 347 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 166/350 (47%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ V +R++ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPAGDTEVRLRRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVR 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ L ER + L F +S+ N+ I +++ E L QAF+EAV Sbjct: 67 DYRT---LPAPERRAYDKILSFLVFLDSIQTANL-PNISEYITANEVNLCLSIQAFQEAV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ + R K + L + ++ E Sbjct: 123 HSQSYSYMLDTICEPQE------RNEVLYQWKDDPHLLSRNEFIGNLYNEFQREKSLEAF 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +++ +++ Sbjct: 177 VRTMIANYILEGIYFYSGFMFFYNLGRNQKMTGSVQEIRYINRDENTHLWLFTNILRELR 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+++E +++ R M+ E EIA+ H + GL+ Y++++ N RC Sbjct: 237 KELPELFSEEKEKEYRQMIREGCEQEIAWGHYVIGDAVSGLSCDMITDYVKYLGNLRCKN 296 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +GL P+++ + + P W+S+ + + +FFE + T Y + + L D Sbjct: 297 LGLAPIYEGHEKEPESMGWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 346 >gi|257456224|ref|ZP_05621421.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema vincentii ATCC 35580] gi|257446310|gb|EEV21356.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema vincentii ATCC 35580] Length = 351 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 96/352 (27%), Positives = 167/352 (47%), Gaps = 15/352 (4%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 + + V ++M+ + ++N +KY WA E Y A NN W+P E+ M D Sbjct: 9 ARKKLFNETGDIEVHLRKMIGGNTTNLNDFNNMKYAWASEWYRQAMNNFWIPEEINMNAD 68 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + ++ L+ E+ + L F +S+ N+ + ++++ E L QAF+E Sbjct: 69 VQDYR---KLSPAEKTAYDKILSFLIFLDSIQTANL-PNVGQYITANEVNLCLTIQAFQE 124 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 AVHS ++ Y++ ++ + R K + L + D Sbjct: 125 AVHSQSYSYMLDTICSPDE------RTAILYQWKDDEHLLKRNKFIGDLYNEFQDDKSAL 178 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L + V + EG++FY+GF +LGR NKM G ++ +YI RDE+ HL +I++ Sbjct: 179 ALLKVAVANYILEGVYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIHE 238 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 ++ E P L+T E + R+M+ E EIA+ H + GL Y+Q++ N RC Sbjct: 239 LQKEEPQLFTPENNELFRSMIREGCEQEIAWGHYVIGDDIPGLTRGMVTDYIQYLGNLRC 298 Query: 305 HQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G EPL++ + E P W+S+ + + +FFE + T Y + + LK D Sbjct: 299 ENLGFEPLYEGHREEPASMSWVSQYSNANLIKTDFFEAKSTAYAKSSALKDD 350 >gi|225386408|ref|ZP_03756172.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme DSM 15981] gi|225047489|gb|EEG57735.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme DSM 15981] Length = 347 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ + V+ +RM+ + ++N +KY W Y A NN W+P E+ M D+ Sbjct: 7 KPLFNPQGDTEVNLRRMIGGNTTNLNDFNNMKYAWVSGWYRQAMNNFWIPEEINMSSDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L + ER + L F +S+ N+ I ++++ E L Q F+EAV Sbjct: 67 DY---PELPEAERTAYDKILSFLIFLDSIQTANL-PNIGQYITANEVNLCLTIQGFQEAV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ R K + L T + D + L Sbjct: 123 HSQSYSYMLDTICSPVE------RNTILYQWKDDEHLLRRNTFIGELYNEFQDKKDAQTL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++I ++K Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLLRNMILELK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L++ E + + M+ E EIA+ H + GL +Y++++ N R Sbjct: 237 KEEPQLFSPETVEMLKAMVEEGVEQEIAWGHYVIGDRISGLTREMVTEYIRYLGNLRWTS 296 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G EPL++ Y E P W+ + + + +FFE + T Y + L D Sbjct: 297 LGFEPLYEGYEEEPESMKWVGQYSNANMVKTDFFEAKSTAYAKSTALVDD 346 >gi|289449785|ref|YP_003474451.1| ribonucleoside-diphosphate reductase subunit beta [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184332|gb|ADC90757.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 400 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 163/348 (46%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + + +D K+M+ +++N +KY W + Y NN W+P E+ M D+ + Sbjct: 62 LFNEKGDIGLDKKKMIGGNPTNLNDFNNVKYKWVSDIYRQMMNNFWIPEEINMSTDVQQY 121 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L ER + L F +SL NN V I ++++ E L QAF+EAVHS Sbjct: 122 RT---LPVAERRAYDKILSFLVFLDSLQTNN-VPFIAQYITANEAVLCLTIQAFQEAVHS 177 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ Y++ ++ + R + + L F D + L Sbjct: 178 QSYSYMLDTICSPDE------RTEILYQWRDDEHLLARNKFIGDLFMAFQNDQSERNLMR 231 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + V + EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++++++++E Sbjct: 232 VLVANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFRNILSELQVE 291 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L++ E ++ R M+ E EIA+ H + GL Y+Q++AN R +G Sbjct: 292 RPDLFSAELVEEYRAMIKEGAEQEIAWGHYVLGDDIPGLTRQMVTDYIQYLANLRAQNLG 351 Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 ++ P W+S+ D + +FFE + T Y + + D Sbjct: 352 FAYIYPDNHSEPASMSWISQYSDANMVKTDFFEAKSTAYAKSTAMIDD 399 >gi|156839886|ref|XP_001643629.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM 70294] gi|156114248|gb|EDO15771.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM 70294] Length = 394 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 97/332 (29%), Positives = 153/332 (46%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + + P++Y +E Y A + W E+ + DL+ W L +ER Sbjct: 68 NEPLLNEDKNRLIMHPIRYPDIYEAYKKAEASFWTAEEIDLSKDLSDWND--KLNSNERF 125 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + Sbjct: 126 FISRVLAFFAASDGIVNENLTENFSVEVKVPEARCFYGFQIMIENIHSETYSLLIDTYIK 185 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WAL++ D+ + V + E Sbjct: 186 DPKESDFLFNAIDYIPQIKEKAEWALRWINN-------------DEALFGERLVAFASIE 232 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + + HL K Sbjct: 233 GVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFASLLFS-------HLDNKPD 285 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 ++ EA +E Y + +P +G+NA QY++F+A+R G E +K E Sbjct: 286 PAIVEKIVTEAVEIEKRYFIDALPVALLGMNAKLMNQYVEFVADRLLVSFGNEKYYKV-E 344 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L + NFFE RV++YQ+ + + Sbjct: 345 NPFDFM-ENISLAGKTNFFEKRVSDYQKASVI 375 >gi|302521843|ref|ZP_07274185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB78] gi|302430738|gb|EFL02554.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces sp. SPB78] Length = 345 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 99/324 (30%), Positives = 173/324 (53%), Gaps = 11/324 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D++ LT E+ +I R + FFA+ + Sbjct: 25 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVSD---LAKLTPGEQHLIGRLVAFFATGD 81 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 82 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 141 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI AKA + ++ + D + FL +L F EG++FY FA + Sbjct: 142 NIPSIRAKAEFCFKWIDEVEKIDRLESQSDR-RRFLLNLICFAACIEGLFFYGAFAYVYW 200 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H++F DV++ ++ E P L+ + + + + ML A Sbjct: 201 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLEAEVKEMLAGAVD 260 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + G G+N S +Y+Q +A++R ++G P++ + NPF +M E+ ++ Sbjct: 261 AELQFARDLCGDGLPGMNTESMREYLQCVADQRLVRLGFSPVYG-SSNPFSFM-ELQGVQ 318 Query: 331 KEKNFFETRVTEYQQG--AELKWD 352 + NFFE R + YQ + +D Sbjct: 319 ELTNFFERRPSAYQVAVEGSVSFD 342 >gi|117928932|ref|YP_873483.1| ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus 11B] gi|117649395|gb|ABK53497.1| Ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus 11B] Length = 348 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 112/324 (34%), Positives = 183/324 (56%), Gaps = 11/324 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E++ +A N W EV + DLA L+ E ++KR + FFA+ + Sbjct: 28 LRPMRYPHFFERFKAAIRNTWTVEEVDLHSDLAD---LRKLSPAEHHLVKRLVAFFATGD 84 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYR 150 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F Sbjct: 85 TIVANNLVLNLYQHINSPEARLYLSRQLFEEAVHVQFYLALLDTYITDERERAEAFAAIE 144 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA++ ++ ++ T + FL +L F EG++FY FA + Sbjct: 145 NIPSIKRKADFCFRWIDSIFDL-RELRTAADRRSFLLNLICFAACIEGLFFYGAFAYVYF 203 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F DVI+ ++ E P L+ E +++R ML EA Sbjct: 204 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVIDTVRREEPELFDDELARQAREMLAEAVD 263 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E +A + + +G G++ Y++ +A+RRC Q+GLEP++ + NPF +M E+ D++ Sbjct: 264 CETQFAEDLLGQGVPGMSLADMRSYLEHVADRRCVQLGLEPIYG-SPNPFTFM-ELQDVQ 321 Query: 331 KEKNFFETRVTEYQQG--AELKWD 352 + NFFE RV YQ G E+ +D Sbjct: 322 ELSNFFERRVAAYQIGVSGEVAFD 345 >gi|291303011|ref|YP_003514289.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis DSM 44728] gi|290572231|gb|ADD45196.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis DSM 44728] Length = 338 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 102/333 (30%), Positives = 177/333 (53%), Gaps = 10/333 (3%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 R+L+ D+ L P++Y +E++ +A N W EV + DL + TD ER +I Sbjct: 8 RLLDPGMDL-TLRPMRYPDFYEQFRAAIRNTWTVEEVDLASDLPDLATF---TDSERHLI 63 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 R + FFA+ +++VANN+VL +Y+H++ PE R YL RQ +EEAVH + ++ + D Sbjct: 64 NRLVAFFATGDTIVANNLVLNLYKHVNAPEARLYLSRQLYEEAVHVQFYLTLLDTYLPDP 123 Query: 143 GEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 + F +PSI KA + ++ T+ T + + FL +L F EG+ Sbjct: 124 EDRVKAFAAVEHIPSIKEKAEFCFKWIDTIDQLD-ELRTPEDRRAFLLNLICFAACIEGL 182 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 +FY FA + L + G+A ++ RDES H+NF V++ ++ E P L+ E + Sbjct: 183 FFYGAFAYVYWLRSRGLLDGLATGTNWVFRDESCHMNFAFSVVDVVRNEEPELFDDELTE 242 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319 M+ EA E+ +A + +G G+ + Y++++A++R ++G+ + ++NP Sbjct: 243 AVTRMIEEAVAAELQFARDLCGEGMPGMTVNDMKSYLEYVADQRLTRLGMPVRYG-SKNP 301 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 F +M+ + D+++ NFFE R T YQ D Sbjct: 302 FGFMA-LQDVQELTNFFERRPTAYQVAVGGTVD 333 >gi|193784694|dbj|BAG53847.1| unnamed protein product [Homo sapiens] gi|193787382|dbj|BAG52588.1| unnamed protein product [Homo sapiens] Length = 297 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 88/309 (28%), Positives = 142/309 (45%), Gaps = 28/309 (9%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + D+ W+S L +ER I L FFA+S+ +V N+V Sbjct: 1 MYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161 + + E R + Q E +HS + +I + D E FN +P + KA+W Sbjct: 58 SQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADW 117 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 AL++ + + V + EG++F FA I L + M G+ Sbjct: 118 ALRWI-------------GDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLT 164 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I RDE LH +F + HL K +++ R ++ A +E + E +P Sbjct: 165 FSNELISRDEGLHCDFACLMFK-------HLVHKPSEERVREIIINAVRIEQEFLTEALP 217 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 +G+N +QY++F+A+R ++G +F ENPF +M E I L+ + NFFE RV Sbjct: 218 VKLIGMNCTLMKQYIEFVADRLMLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVG 275 Query: 342 EYQQGAELK 350 EYQ+ + Sbjct: 276 EYQRMGVMS 284 >gi|108763495|ref|YP_633213.1| ribonucleoside-diphosphate reductase subunit beta [Myxococcus xanthus DK 1622] gi|108467375|gb|ABF92560.1| ribonucleoside-diphosphate reductase, beta subunit [Myxococcus xanthus DK 1622] Length = 349 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 105/340 (30%), Positives = 178/340 (52%), Gaps = 9/340 (2%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + +LN ++ L P+ Y +E Y +A N W EV DL + Sbjct: 1 METPRRSARSTEAMLLNPGLNL-TLRPMAYPQFFEMYRNAIKNTWTVEEVDFSTDLVDLR 59 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 S +TD ER +I R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H Sbjct: 60 S--KMTDAERHLIHRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQ 117 Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + ++ + D E F +PSI KA + +++ ++ T TK ++FL Sbjct: 118 FYLTLLDTYVPDPAERAMAFAAVDNIPSIQRKAQFCMKWMDSIQGLD-TLQTKAHRRQFL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 +L F EG++F+ FA + L + G+A ++ RDES H+ F + I + Sbjct: 177 LNLICFAGCIEGLFFFAAFAYVYFLRSKGLLNGLAAGTNWVFRDESAHMAFAFESIQVAR 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+ + ++ ML EA E +A + + G +GL+ Y++++A++R Sbjct: 237 KEEPDLFDAQMERDVVAMLREAVECETQFAQDLLSGGVMGLSVQDMRGYLEYVADQRLQM 296 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 +G+ P+F T+NP +M + D+++ NFFE RV+ YQ Sbjct: 297 LGMTPVFG-TKNPLHFMD-LQDVQELTNFFERRVSSYQVA 334 >gi|332247270|ref|XP_003272776.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 2 [Nomascus leucogenys] gi|332247272|ref|XP_003272777.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like isoform 3 [Nomascus leucogenys] Length = 297 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 88/309 (28%), Positives = 142/309 (45%), Gaps = 28/309 (9%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + D+ W+S L +ER I L FFA+S+ +V N+V Sbjct: 1 MYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161 + + E R + Q E +HS + +I + D E FN +P + KA+W Sbjct: 58 SQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADW 117 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 AL++ + + V + EG++F FA I L + M G+ Sbjct: 118 ALRWI-------------GDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLT 164 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I RDE LH +F + HL K +++ R ++ A +E + E +P Sbjct: 165 FSNELISRDEGLHCDFACLMFK-------HLVHKPSEERVREIIINAVRIEQEFLTEALP 217 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 +G+N +QY++F+A+R ++G +F ENPF +M E I L+ + NFFE RV Sbjct: 218 VKLIGMNCILMKQYIEFVADRLMLELGFGKVF-RVENPFDFM-ENISLEGKTNFFEKRVG 275 Query: 342 EYQQGAELK 350 EYQ+ + Sbjct: 276 EYQRMGVMS 284 >gi|318060206|ref|ZP_07978929.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actG] gi|318077113|ref|ZP_07984445.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actF] gi|333024515|ref|ZP_08452579.1| putative ribonucleoside-diphosphate reductase beta chain [Streptomyces sp. Tu6071] gi|332744367|gb|EGJ74808.1| putative ribonucleoside-diphosphate reductase beta chain [Streptomyces sp. Tu6071] Length = 345 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 99/324 (30%), Positives = 173/324 (53%), Gaps = 11/324 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D++ LT E+ +I R + FFA+ + Sbjct: 25 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVSD---LAKLTPGEQHLIGRLVAFFATGD 81 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 82 SIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAVE 141 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI AKA + ++ + D + FL +L F EG++FY FA + Sbjct: 142 NIPSIRAKAEFCFKWIDEVEKIDRLESRSDR-RRFLLNLICFAACIEGLFFYGAFAYVYW 200 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H++F DV++ ++ E P L+ + + + + ML A Sbjct: 201 FRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLEAEVKEMLAGAVD 260 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + G G+N S +Y+Q +A++R ++G P++ + NPF +M E+ ++ Sbjct: 261 AELQFARDLCGDGLPGMNTESMREYLQCVADQRLVRLGFSPVYG-SSNPFSFM-ELQGVQ 318 Query: 331 KEKNFFETRVTEYQQG--AELKWD 352 + NFFE R + YQ + +D Sbjct: 319 ELTNFFERRPSAYQVAVEGSVSFD 342 >gi|254442775|ref|ZP_05056251.1| ribonucleoside-diphosphate reductase, beta subunit [Verrucomicrobiae bacterium DG1235] gi|198257083|gb|EDY81391.1| ribonucleoside-diphosphate reductase, beta subunit [Verrucomicrobiae bacterium DG1235] Length = 361 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 123/330 (37%), Positives = 195/330 (59%), Gaps = 2/330 (0%) Query: 22 KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K+++N R + LLPLKY WA+E Y + NHW P ++ M D+ WK +++ ER Sbjct: 26 KKIINGRETMTFNLLPLKYNWAYEIYKTMKANHWEPEDIGMNKDIEQWKDTEQVSEIERW 85 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I +G+F+++E +V +NI+ I ++ PE + L R A EE VH+ + Y+I+SLG+ Sbjct: 86 IIMMGIGYFSAAEGIVGDNILHVIRELVTAPELKLVLGRHAHEENVHADSLLYMISSLGI 145 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E M+ ++P+I K + + + L + T T + Q+F +++F+F EG Sbjct: 146 NPHECEAMFEDIPTIVKKNEFVTRQSHALRNDVDLTIT-ENKQKFAKNVFLFGQCMEGTQ 204 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY F ILSL R NK GI E ++Y +RDES H+ ++ + ENP +WT EF+ + Sbjct: 205 FYGMFGMILSLYRQNKFRGIGEMFRYTLRDESNHIELLRNLFMDLIEENPDVWTPEFKAE 264 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 R + EA LE + + +P +GL QY+ +IA+RR GL+PL NP Sbjct: 265 LRDAMSEAIALEKEFIADCLPVDSIGLRKEDFVQYIDYIADRRLEGCGLDPLTPGVTNPL 324 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PW++E++D+KKE+NFFE RVTEYQ+ + L+ Sbjct: 325 PWLAEMMDIKKEQNFFEGRVTEYQKASSLE 354 >gi|266623614|ref|ZP_06116549.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium hathewayi DSM 13479] gi|288864591|gb|EFC96889.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium hathewayi DSM 13479] Length = 346 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 96/350 (27%), Positives = 164/350 (46%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ + +V ++RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPDGDTDVRNRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWVPEEINLGPDVK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +S+ N+ AI +++ E L Q F+EAV Sbjct: 67 DY---PMLDAGERRAYDKILSFLVFLDSIQTANL-PAIGEYITANEINLCLSIQTFQEAV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ + R K + L T + KD Sbjct: 123 HSQSYSYMLDTICEPQT------RNEVLYQWKNDEHLLARNTFIGNLYNEFQKDKSPFTF 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++FY+GF +LGR +KM G A++ +YI RDE+ HL ++I ++K Sbjct: 177 MKTVVANFILEGVYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFRNMILELK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + R M+ E EIA+ H + GL Y+Q++ N RC Sbjct: 237 NEEPELFTPDRVDVYREMIKEGCRQEIAWGHYAIGDKVPGLTKDMITDYIQYLGNLRCMS 296 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G EP+++ + + P W+S+ + + +FFE R T Y + + L D Sbjct: 297 LGFEPIYEGHEKEPESMAWVSQYSNANMIKTDFFEARSTAYAKSSALVDD 346 >gi|210631890|ref|ZP_03297102.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279] gi|210159815|gb|EEA90786.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279] Length = 352 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 160/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ + ++V D+RM+ + ++N +KY W Y A NN W+P E+ + D+ Sbjct: 12 KPLFNPDGDLDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINLTQDVK 71 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + LT ER + L F +SL + N+ I +++ E L QAF+E+V Sbjct: 72 DY---PRLTAAERAAYDKILSFLVFLDSLQSANL-PNIAEYITANEVNLCLSIQAFQESV 127 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ R K + L T + + D Sbjct: 128 HSQSYSYMLDTICDP------AKRNEILYQWKTDEPLLARNTFIGNLYNEFQERRDARTF 181 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++ Sbjct: 182 LRVLMANFILEGVYFYSGFMFFYNLARMGKMPGSAQEIRYINRDENTHLWLFRNIILELQ 241 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T E + R ML E EIA+ + GL E Y++++ N R Sbjct: 242 KEEPQLFTSENVEMLRQMLEEGVRQEIAWGRYVLGDAIPGLTGDMVEGYIKYLGNLRWSS 301 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G L++ Y P W+S+ + + +FFE + T Y + L D Sbjct: 302 LGFGQLYEGYRSEPEDMAWVSQYSNANMVKTDFFEAKSTAYAKSTALVDD 351 >gi|229816571|ref|ZP_04446870.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM 13280] gi|229807906|gb|EEP43709.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM 13280] Length = 352 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 91/355 (25%), Positives = 158/355 (44%), Gaps = 15/355 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 P+ ++V D+RM+ + ++N +KY W Y A NN W+P E+ + Sbjct: 7 QTLVKKPLFNPNGDLDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINL 66 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ + L++ ER + L F +SL + N+ I +++ E L QA Sbjct: 67 TQDVKDY---PRLSEAERAAYDKILSFLVFLDSLQSANL-PNIAEYITANEVNLCLSIQA 122 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 F+E+VHS ++ Y++ ++ R K + L T + + Sbjct: 123 FQESVHSQSYSYMLDTICDP------AKRNEILYQWKTDKHLLARNTFIGDLYNEFQEHR 176 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 D + + + EG++FY+GF +L R KM G A++ +YI RDE+ HL + Sbjct: 177 DARTFLRVLMANYILEGVYFYSGFMFFYNLARMGKMPGSAQEIRYINRDENTHLWLFRSI 236 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 I +++ E P L++ E R ML E EIA+ + GL E Y++++ N Sbjct: 237 ILELQKEEPQLFSNENVTMLREMLEEGVRQEIAWGRYVLGDAIPGLTGDMVEGYIKYLGN 296 Query: 302 RRCHQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 R +G L++ Y P W+S+ + + +FFE + T Y + L D Sbjct: 297 LRWSSLGFGQLYEGYRTEPADMAWVSQYSNANMVKTDFFEAKSTAYAKSTALVDD 351 >gi|320536436|ref|ZP_08036471.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema phagedenis F0421] gi|320146705|gb|EFW38286.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema phagedenis F0421] Length = 363 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 96/349 (27%), Positives = 163/349 (46%), Gaps = 15/349 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + V + +RM+ + ++N LKY W E Y A NN W+P E+ M D+ Sbjct: 24 ALFNEHGDVELHKRRMIGGNTTNLNDFNNLKYPWVSEWYRQAMNNFWIPEEINMNTDVQD 83 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 ++ L+ E+ + L F +S+ N+ + ++++ E L QAF+EAVH Sbjct: 84 YR---KLSKAEKTAYDKILSFLIFLDSIQTANL-PNVGQYITANEVNLCLTIQAFQEAVH 139 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y++ ++ E R K + L + D L Sbjct: 140 SQSYSYMLDTICSPEE------RNDILYQWKDDEHLLARNKFIGNLYNEFVNDKSALALV 193 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V + EG++FY+GF +LGR NKM G ++ +YI RDE+ HL +I +++ Sbjct: 194 KVAVANYILEGVYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQELQK 253 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P L+T E + R M+ E EI + H + GLN Y+Q++ N RC + Sbjct: 254 EEPQLFTPENIEMFRAMIKEGCEQEIKWGHYVIGDDIPGLNKQMITDYIQYLGNLRCENL 313 Query: 308 GLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 G EPL++ + E P W+S+ + + +FFE + T Y + + + D Sbjct: 314 GFEPLYEGHREEPASMSWVSQYSNANLIKTDFFEAKSTAYAKSSAMVDD 362 >gi|300706309|ref|XP_002995432.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01] gi|239604534|gb|EEQ81761.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01] Length = 325 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 90/328 (27%), Positives = 149/328 (45%), Gaps = 30/328 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +LN + L P+KY W+ Y A ++ W EV + D W L D ER Sbjct: 8 EPLLNPNEERYVLFPIKYHDIWQMYKKAESSFWTVEEVDLTADRNDW---LSLNDKERYF 64 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+V ++ E + + Q E +HS + +I + D Sbjct: 65 ISNILAFFAASDGIVNANLVERFANEVTILEAKCFYGFQVAIENIHSEMYSLLIDAYITD 124 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E FN +P I KA+WAL++ + ++ + + EG Sbjct: 125 QDEKTHLFNAISTIPCIKKKADWALKWIKD-------------EKSSFATRVIAFACVEG 171 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L M G+ + I RDE LH +F + + ++PH Sbjct: 172 IFFSGAFASIFWLKNRGLMPGLTFSNELISRDEGLHCDFACLLNQYLINKSPH------- 224 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ EA +E + ++P +G+N QY++F+A+R +GLE + T N Sbjct: 225 --ILDIVKEAVEIEKEFLGVSLPVNLIGMNCKLMCQYIEFVADRLLINLGLEKYYN-TLN 281 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346 PF +M E I L + NFF+ R ++YQ+ Sbjct: 282 PFDFM-ENISLVGKTNFFDKRESQYQKA 308 >gi|317472120|ref|ZP_07931452.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA] gi|316900524|gb|EFV22506.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA] Length = 347 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 162/350 (46%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ +V +RM+N + ++N +KY W Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPYGDTDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K L++ ER + L F +S+ N+ I +++ E L QAF+EAV Sbjct: 67 DYKQ---LSEPERRAYDKILSFLIFLDSIQTANL-PNISEYITANEVNLCLSIQAFQEAV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ + R K + L + + + E Sbjct: 123 HSQSYSYMLDTICEPQE------RNDILYQWKNDPHLLERNQFIGDLYNDFQTNKNTETF 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++FY+GF +LGR ++M G ++ +YI RDE+ HL +++ ++K Sbjct: 177 VKTLVANYILEGIYFYSGFMFFYNLGRNHRMPGSVQEIRYINRDENTHLWLFKNILLELK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+ + R M+ + EI + H + GL E+Y++++ N RC Sbjct: 237 KEEPSLFHPDCINDYRRMIKKGCEQEIRWGHYVIGDEIQGLKKEMVEEYIRYLGNLRCQN 296 Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G EP++ +E W+S+ + + +FFE + T Y + + L D Sbjct: 297 LGFEPIYPGSETEPESMSWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 346 >gi|62637405|ref|YP_227403.1| Ribonucleotide reductase small subunit [Deerpox virus W-848-83] gi|115503265|gb|ABI99183.1| ribonucleotide reductase small subunit [Deerpox virus W-848-83] Length = 321 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 148/332 (44%), Gaps = 28/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L ++ + P+ Y W Y A + W EV + DL WK LTD+ER Sbjct: 2 EPLLVESNNRFVIFPIIYNDIWIMYKKAIASFWTTEEVDLSKDLLDWK---KLTDNERYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + D Sbjct: 59 IKNILAFFAASDGIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E + I KA WA ++ + + V + EG Sbjct: 119 VDEKNHLLKAIDTIDCIKEKAKWAEKWI-------------LDKESTYGERLVAFAAVEG 165 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + Q+ Sbjct: 166 IFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKQLLY-------PPST 218 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + ++ EA +E ++ + +P +G+N QY++F+A+R ++G +FK +EN Sbjct: 219 SRIINIIVEAVSIEKSFLTKALPVKLIGMNCELMCQYIEFVADRLLSELGCNKIFK-SEN 277 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV++YQ+ + Sbjct: 278 PFDFM-ESISLEGKTNFFEKRVSDYQKMGIMS 308 >gi|160937686|ref|ZP_02085046.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC BAA-613] gi|158439331|gb|EDP17083.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC BAA-613] Length = 347 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ + + + +RM+ + ++N +KY WA Y A NN W+P E+ + DL Sbjct: 7 KPLFNPQGDTDKNSRRMIGGNTTNLNDFNNMKYTWASSWYRQAMNNFWIPEEINLSADLK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K+ LT ER + L F +S+ N+ I ++++ E L Q F+EAV Sbjct: 67 DYKN---LTAAERTAYDKILSFLVFLDSIQTANLPC-IAQYITANEVNLCLTIQGFQEAV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ R+ K + L T + + D L Sbjct: 123 HSQSYSYMLDSICSPVE------RDRILYQWKEDEHLLRRNTFIGNLYNEFQEKKDDVTL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +++ Sbjct: 177 LRVIMANYILEGIYFYSGFMFFYNLGRGGKMPGSVQEIRYINRDENTHLWLFRSMIAELR 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + R+ML E EI + + GL Y++++ N R Sbjct: 237 KEEPQLFTPKMVDMLRSMLEEGVAQEIQWGCYVIGDDVPGLTREMVTDYIRYLGNLRWSG 296 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G L++ Y E P W+++ + + +FFE + T Y + A + D Sbjct: 297 LGFGTLYEGYDEEPQSMKWVNQYSNANMVKTDFFEAKSTAYAKSAAIVDD 346 >gi|22788780|ref|NP_690492.1| Rr2 [Heliothis zea virus 1] gi|22671540|gb|AAN04367.1|AF451898_72 Rr2 [Heliothis zea virus 1] Length = 333 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 153/322 (47%), Gaps = 24/322 (7%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 S L P++Y WE Y A + W EV + DL W+++ LT+ ER I L Sbjct: 15 EPSSRFTLFPIRYHDIWEMYKKAQASFWTVEEVDLSKDLYDWETR--LTETEREFISHIL 72 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL- 145 FFA S+ +V +N++ + L+ PE + Q E VHS + +I D Sbjct: 73 AFFAGSDGIVNDNLLTRFSQELTIPEVSCFYGFQIMIENVHSEMYSTLIDMYIRDPQRKH 132 Query: 146 --FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 FN VPSI KA W +++ D D+ D V + EG++F Sbjct: 133 MLFNAIDTVPSIRKKAQWVIRWI-------------DDDKSSYADRLVAFAAVEGIFFSG 179 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 FA I L + M G+ ++I RDE LH +F I + P + + +K Sbjct: 180 SFAAIFWLKKRGLMPGLTHSNEFISRDEGLHCDFAILLFRNYL--RPECRSSD--EKVIN 235 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 ++ +A +E + E++P +G+N +Y++F+A+R +++ ++ +NPF +M Sbjct: 236 IVTDAVRIEQEFLTESLPVSMIGMNCKLMCEYIEFVADRLLYELIGRKIYN-AKNPFDFM 294 Query: 324 SEVIDLKKEKNFFETRVTEYQQ 345 + I L+ + NFFE +V+EY++ Sbjct: 295 TS-ISLEGKTNFFEKKVSEYKR 315 >gi|149375674|ref|ZP_01893443.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola DG893] gi|149360076|gb|EDM48531.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola DG893] Length = 352 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 138/349 (39%), Positives = 194/349 (55%), Gaps = 5/349 (1%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 N G VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M Sbjct: 9 NTQTRPAAHEGPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMA 68 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ + + L+ E+ + + L + +S+ L NI LA+ +S PE + Y RQ + Sbjct: 69 QDVHDYHHR--LSAPEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVY 126 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEA+H+ +Q+ I +L LD+ E++N YR VP+I K A + KD Sbjct: 127 EEAMHTWAYQHCIETLNLDQSEIYNRYRVVPAINGKIQMANRRLDAAMRSDMNLRDKDDL 186 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 QEF+ F VFEG WFY GF+ I +L R M G EQ QYI+RDE++H +FG+ V+ Sbjct: 187 QEFIMSYLFFAAVFEGAWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVV 246 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 NQI E + R M E+ E AYA+ + +G +A + +F+ANR Sbjct: 247 NQILEEENITLDP---KAVRDMWDESEAAETAYANYILRDPILGYSAQYHSEQFRFVANR 303 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 R +GLE F +N PW+ E L+KEKNFFETRV EYQ GA+L+W Sbjct: 304 RARTVGLEEPFPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352 >gi|225320685|dbj|BAH29738.1| ribonucleoside-diphosphate reductase subunit M2 [Dicyema japonicum] Length = 337 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 161/343 (46%), Gaps = 28/343 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + ++ + D + +L + L P++Y + Y A + W EV + D+ W Sbjct: 3 LPSEQEEFSDDQEPLLVSNPRRFVLFPIEYPDIFTMYKQALASIWTVEEVDLSKDIKHW- 61 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L DE+ I L FFA+S+ +V N+V + E R + Q E +HS Sbjct: 62 --NILNSDEKRFISHVLAFFAASDGIVNENLVQRFSVEVQVSEARSFYGLQIAVENIHSE 119 Query: 130 TFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I + D + ++F+ +P + KA+WA+++ ++ + Sbjct: 120 MYSLLIDTYISDFQEKDKMFSAIETMPFVKKKADWAIRWI-------------ESTESHF 166 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V + EG++F FA I L + M G+ + I RDE LH +F + + +K Sbjct: 167 SERLVAFAAVEGIFFSGSFASIFWLKKRGVMPGLTYSNELISRDEGLHTDFACLLYHHLK 226 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 + P + + ++ EA +LE + E +P +G+N QY++F+A+R + Sbjct: 227 KKLP-------RDRILQIITEAVVLEKEFLTEALPVALIGMNVNLMSQYIEFVADRLIIE 279 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G + + Y +NPF +M E I L + NFFE RV EYQ+ + Sbjct: 280 LGYDKHY-YAQNPFDFM-ENISLSGKTNFFEKRVGEYQRMGVM 320 >gi|17551968|ref|NP_497821.1| RiboNucleotide Reductase family member (rnr-2) [Caenorhabditis elegans] gi|1172941|sp|P42170|RIR2_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|3873950|emb|CAA84688.1| C. elegans protein C03C10.3, confirmed by transcript evidence [Caenorhabditis elegans] Length = 381 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 155/332 (46%), Gaps = 28/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ ML + + PLK+ W Y A + W EV + D+ W+ NG DE+ Sbjct: 61 DEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQY 117 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+ + E R + Q E +HS + +I + Sbjct: 118 FISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLIETYIR 177 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 DE E FN E I KA+WAL++ + + + + E Sbjct: 178 DETERNTLFNAVDEFEFIKKKADWALRWI-------------SDKKASFAERLIAFAAVE 224 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + ++++ K Sbjct: 225 GIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYSKLQK-------KLT 277 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 QQ+ ++ +A +E + E +P +G+N QY++F+A+ ++G + L+K ++ Sbjct: 278 QQRIYDIIKDAVAIEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLVELGCDKLYK-SK 336 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I + + NFFE RV+EYQ+ + Sbjct: 337 NPFDFM-ENISIDGKTNFFEKRVSEYQRPGVM 367 >gi|225164890|ref|ZP_03727109.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] gi|224800504|gb|EEG18881.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2] Length = 362 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 117/330 (35%), Positives = 192/330 (58%), Gaps = 3/330 (0%) Query: 22 KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KR++N R + LLPLKY WA++ Y + NHW P ++PM D+ W+ +TD ER Sbjct: 26 KRVINGRETMTFNLLPLKYQWAYDLYRTMKANHWEPEDIPMGKDIEQWRDPRAVTDQERW 85 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I+ +G+F+++E +V +NI ++ PE + L R A EE +H+ + Y+I+SLG+ Sbjct: 86 IIRMGIGYFSAAEGIVGDNIQHVTRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E M+ ++P+I K + ++ ++ L + Q +++F+F EG Sbjct: 146 NPHECEAMFEDIPTIVRKNEFVVKNSRQLRRD-LDLTQPENKQLLARNMFLFGQCMEGTQ 204 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY F ILSL R NK GI + ++Y +RDES H+ +++ + ENP +WT F+++ Sbjct: 205 FYGLFGMILSLYRQNKFPGIGQMFRYTLRDESNHIEVFRNLLMDLVEENPEIWTPGFKEE 264 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENP 319 R + EA LE + + +P VGL Y+ +IA+RR +GL P+ +NP Sbjct: 265 LRETMREAVTLEKEFIRDCLPVNAVGLAVDEFLTYIDYIADRRLEGVGLAPISATPIKNP 324 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 PW++E++D+KKE+NFFE RVTEYQ+ + L Sbjct: 325 LPWLAEMMDIKKEQNFFEGRVTEYQKASSL 354 >gi|70936723|ref|XP_739266.1| ribonucleotide reductase small subunit [Plasmodium chabaudi chabaudi] gi|56516136|emb|CAH80811.1| ribonucleotide reductase small subunit, putative [Plasmodium chabaudi chabaudi] Length = 349 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 159/338 (47%), Gaps = 29/338 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++++LN S L P+ Y W Y A + W E+ + DL ++ L Sbjct: 24 QKNKECNEKILNKESSRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFE---KL 80 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +E+ IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ + Sbjct: 81 NVNEKHFIKHVLAFFAASDGIVLENLASKFLREVQIIEAKKFYAFQIAVENIHSETYSLL 140 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + DE E F+ +P+I KA WA ++ D + V Sbjct: 141 IDNYIRDEKERLNLFHAIENIPAIKNKALWAAKWIN--------------DTNSFAERIV 186 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 EG+ F F I + NK+ G+ + I RDE LH +F + + ++ + P Sbjct: 187 ANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE 246 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G Sbjct: 247 -------EVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK 299 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +F +++NPF WM +I L+ + NFFE RV +YQ+ + Sbjct: 300 VF-HSKNPFSWMD-LISLQGKTNFFEKRVADYQKSGVM 335 >gi|182419335|ref|ZP_02950587.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum 5521] gi|237666940|ref|ZP_04526925.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376666|gb|EDT74238.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum 5521] gi|237658139|gb|EEP55694.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 344 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 98/348 (28%), Positives = 169/348 (48%), Gaps = 13/348 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ + KR++N + ++N +KY W + Y NN W+P EV + DL Sbjct: 6 KPLFNEFGDREITKKRLINGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEVNLSQDLK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ L D+ER+ + L F +S+ N+ I +++ E L Q+F+EAV Sbjct: 66 DYQN---LLDEERIAYDKILSFLIFLDSIQTANL-SNINNYITASEVNLCLTIQSFQEAV 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ E R K + L + + +E L Sbjct: 122 HSQSYSYMLDSICSPEK------RNEILYQWKDDEILLNRNKFIGDLYNEFIDNPTEETL 175 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++ Sbjct: 176 LKTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQ 235 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 EN L+T+E + + R M+ EI + H + G+N E+Y++++ N+R + Sbjct: 236 NENAELFTEEIKNELREMMKTGVEQEILWGHYVIGDKIQGINKKLIEEYIKYLGNKRLKE 295 Query: 307 IGLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 I LEPLF+ + NP PW+ + + +FFE R T Y + A L D Sbjct: 296 INLEPLFEGHDVNPAPWVDRQSNANSVKTDFFEARSTAYAKAATLVDD 343 >gi|256825983|ref|YP_003149943.1| ribonucleotide reductase subunit beta [Kytococcus sedentarius DSM 20547] gi|256689376|gb|ACV07178.1| ribonucleotide reductase, beta subunit [Kytococcus sedentarius DSM 20547] Length = 365 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 107/324 (33%), Positives = 177/324 (54%), Gaps = 10/324 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E + A N W E+ + DLA N L+ ER ++ R + FFA+ + Sbjct: 44 LRPMRYPQFYEMFRDAIKNTWTVEEIDLHSDLADLH--NKLSPAERHLVSRLVAFFATGD 101 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---R 150 ++VANN+VL +Y H+++PE R YL RQ FEEAVH + ++ + DE E F + Sbjct: 102 TIVANNLVLNLYEHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYVPDEAERFEAFAAVE 161 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + + ++ + TK+ ++FL +L F EG++FY FA + Sbjct: 162 NIPSIRTKAEFCFTWIDSIENLG-QLETKEQRRQFLLNLICFGTCIEGLFFYGAFAYVYF 220 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F +V+ ++ E P L+ E + R ML EA Sbjct: 221 LRSRGLLNGLASGTNWVFRDESMHMAFAFEVVETVRSEEPDLFDAEMAGQVRQMLMEAVD 280 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E +A + + G GL+ Y++ +A+RR Q+G+ ++ T+NP +M E+ D++ Sbjct: 281 AEAQFAEDLLGMGVAGLSVADMRAYLENVADRRAVQLGMPEIYG-TKNPLAFM-ELQDVQ 338 Query: 331 KEKNFFETRVTEYQQG--AELKWD 352 + NFFE RV+ YQ G + +D Sbjct: 339 ELSNFFERRVSAYQVGVEGSVSFD 362 >gi|253827828|ref|ZP_04870713.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter canadensis MIT 98-5491] gi|313142391|ref|ZP_07804584.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter canadensis MIT 98-5491] gi|253511234|gb|EES89893.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter canadensis MIT 98-5491] gi|313131422|gb|EFR49039.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter canadensis MIT 98-5491] Length = 341 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 95/342 (27%), Positives = 178/342 (52%), Gaps = 13/342 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++R+ + + +L +KY WA+ + N W P EV M D Sbjct: 5 KKIYNPSSNESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKR 64 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + GLT +E++ R L +SL NN++ + ++++PE L+RQAFEEA+ Sbjct: 65 DYAD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ S+ + E+++M+R + AK ++ + + L++ + + Sbjct: 123 HSQSYAVMVESISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLATNPI--------ERNI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GFA +L R+ KM+G A+ ++I RDE HL ++IN +K Sbjct: 175 IKAMFANQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINSVK 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E+P L+TK+ +++ M EA +E A+ +GL + ++Y++++A+ R + Sbjct: 235 KESPELFTKDLEEEVIEMFREAVKVETAWGEYITQGQILGLTSEIIQEYIKYLADERLRR 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGA 347 IGL L+ ++P W+ + + NFFE VT Y +G+ Sbjct: 295 IGLPTLYN-AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 335 >gi|323692021|ref|ZP_08106269.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14673] gi|323503944|gb|EGB19758.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum WAL-14673] Length = 347 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + ++ +RM+N + ++N +KY W Y A NN W+P E+ + D+ + Sbjct: 9 LFNPDGDTDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDVKDY 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 LT ER + L F +S+ N+ AI +++ E L Q F+EAVHS Sbjct: 69 ---PLLTVGERRAYDKILSFLVFLDSIQTANL-PAIGEYITANEINLCLSIQIFQEAVHS 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ Y++ ++ + R K + L T + KD Sbjct: 125 QSYSYMLDTICEPQT------RNEVLYQWKNDGHLLARNTFIGGLYNEFQKDKTPFAFVK 178 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + EG++FY+GF +LGR +KM G A++ +YI RDE+ HL +I +++ E Sbjct: 179 TLIANYILEGIYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFGSIIRELQTE 238 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+++E R M+ E EIA+ + GL Y++++ N RC +G Sbjct: 239 EPSLFSREKTDCYREMIREGCEQEIAWGCYAIGDEVPGLTKQMITDYIRYLGNLRCSNLG 298 Query: 309 LEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 EPL+ + W+S+ + + +FFE R T Y + + L D Sbjct: 299 FEPLYDGYVHEPETMAWVSQYSNANMIKTDFFEARSTAYAKSSALVDD 346 >gi|268575178|ref|XP_002642568.1| C. briggsae CBR-RNR-2 protein [Caenorhabditis briggsae] gi|187023588|emb|CAP37241.1| CBR-RNR-2 protein [Caenorhabditis briggsae AF16] Length = 365 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 89/332 (26%), Positives = 153/332 (46%), Gaps = 28/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L + + PL++ W+ Y A + W EV + D+ W+ NG DE+ Sbjct: 45 DEPLLQDLDNRFVIFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQY 101 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+ + E R + Q E +HS + +I + Sbjct: 102 FISRVLAFFAASDGIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYSKLIETYIR 161 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 DE E FN E I KA+WAL++ + + + + E Sbjct: 162 DEKERMKLFNAIFEFEFIKKKADWALRWI-------------SDTKASFAERLIAFAAVE 208 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + + ++ K Sbjct: 209 GIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYSMLQ-------NKLS 261 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 Q++ ++ +A +E + E +P +G+N QY++F+A+ ++G + L+ + Sbjct: 262 QERIFEIIRDAVAIEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLQELGCDKLYNV-K 320 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I + + NFFE RV+EYQ+ + Sbjct: 321 NPFDFM-ENISIDGKTNFFEKRVSEYQRPGVM 351 >gi|323486976|ref|ZP_08092290.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum WAL-14163] gi|323399688|gb|EGA92072.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum WAL-14163] Length = 347 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 159/348 (45%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + ++ +RM+N + ++N +KY W Y A NN W+P E+ + D+ + Sbjct: 9 LFNPDGDTDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDVKDY 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 LT ER + L F +S+ N+ AI +++ E L Q F+EAVHS Sbjct: 69 ---PLLTVGERRAYDKILSFLVFLDSIQTANL-PAIGEYITANEINLCLSIQIFQEAVHS 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ Y++ ++ + R K + L T + KD Sbjct: 125 QSYSYMLDTICEPQT------RNEVLYQWKNDGHLLARNTFIGGLYNEFQKDKTPFAFVK 178 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + EG++FY+GF +LGR +KM G A++ +YI RDE+ HL +I +++ E Sbjct: 179 TLIANYILEGIYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFGSIIRELQTE 238 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+++E R M+ E EIA+ + GL Y++++ N RC +G Sbjct: 239 EPSLFSREKTDCYREMIREGCEQEIAWGCYAIGDEVPGLTKQMITDYIRYLGNLRCSNLG 298 Query: 309 LEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 EPL+ + W+S+ + + +FFE R T Y + + L D Sbjct: 299 FEPLYDGYAHEPETMAWVSQYSNANMIKTDFFEARSTAYAKSSALVDD 346 >gi|224418874|ref|ZP_03656880.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter canadensis MIT 98-5491] Length = 340 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 95/342 (27%), Positives = 178/342 (52%), Gaps = 13/342 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++R+ + + +L +KY WA+ + N W P EV M D Sbjct: 4 KKIYNPSSNESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKR 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + GLT +E++ R L +SL NN++ + ++++PE L+RQAFEEA+ Sbjct: 64 DYAD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEAL 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ S+ + E+++M+R + AK ++ + + L++ + + Sbjct: 122 HSQSYAVMVESISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLATNPI--------ERNI 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GFA +L R+ KM+G A+ ++I RDE HL ++IN +K Sbjct: 174 IKAMFANQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINSVK 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E+P L+TK+ +++ M EA +E A+ +GL + ++Y++++A+ R + Sbjct: 234 KESPELFTKDLEEEVIEMFREAVKVETAWGEYITQGQILGLTSEIIQEYIKYLADERLRR 293 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGA 347 IGL L+ ++P W+ + + NFFE VT Y +G+ Sbjct: 294 IGLPTLYN-AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 334 >gi|126664354|ref|ZP_01735338.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17] gi|126630680|gb|EBA01294.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17] Length = 352 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 135/343 (39%), Positives = 193/343 (56%), Gaps = 5/343 (1%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + VNVDDKR++N +DVNQL P KY WAWE +++A NHW P +V M D+ + Sbjct: 15 ALNSSVAPVNVDDKRVINGNTDVNQLAPFKYPWAWEYFMNANKNHWTPLDVNMSQDVHDY 74 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L E+ + + L + +S+ L NI LA+ ++ PE + Y RQ +EEAVH+ Sbjct: 75 HHR--LNPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEAVHT 132 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 T+Q+ I +L LD+GE++N YR VP I K A + KD QEF+ Sbjct: 133 WTYQHCIETLNLDQGEIYNRYRVVPQINGKIQMANRRLNAAMRSDINLRNKDDLQEFIMS 192 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 F VFEG WFY GF+ I +L R M G EQ+QYI+RDE++H +FG+ V+NQI E Sbjct: 193 YLFFAAVFEGCWFYNGFSPIFALQRRGLMRGTGEQFQYILRDEAMHFSFGLKVVNQILEE 252 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 + + R M E+ E YA+ + +G +A + +F+ANRR + Sbjct: 253 ENISFDP---KAVRDMWDESEAAESDYANYILRDPILGYSAEYHIEQFRFVANRRARTVN 309 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 L F +N PW+ E ++KEKNFFETRV EYQ GA+L+W Sbjct: 310 LPEPFPGAKNVSPWLEEQATMRKEKNFFETRVIEYQTGAQLEW 352 >gi|167748341|ref|ZP_02420468.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662] gi|167652333|gb|EDR96462.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662] Length = 358 Score = 294 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 162/350 (46%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ +V +RM+N + ++N +KY W Y A NN W+P E+ + D+ Sbjct: 18 KPLFNPYGDTDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIK 77 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K L++ ER + L F +S+ N+ I +++ E L QAF+EAV Sbjct: 78 DYKQ---LSEPERRAYDKILSFLIFLDSIQTANL-PNISEYITANEVNLCLSIQAFQEAV 133 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ + R K + L + + + E Sbjct: 134 HSQSYSYMLDTICEPQE------RNDILYQWKNDPHLLERNQFIGDLYNDFQTNKNTETF 187 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++FY+GF +LGR ++M G ++ +YI RDE+ HL +++ ++K Sbjct: 188 VKTLVANYILEGIYFYSGFMFFYNLGRNHRMPGSVQEIRYINRDENTHLWLFKNILLELK 247 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+ + R M+ + EI + H + GL E+Y++++ N RC Sbjct: 248 KEEPSLFHPDCINDYRRMIKKGCEQEIRWGHYVIGDEIQGLKKEMVEEYIRYLGNLRCQN 307 Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G EP++ +E W+S+ + + +FFE + T Y + + L D Sbjct: 308 LGFEPIYPGSETEPESMSWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 357 >gi|254492407|ref|ZP_05105579.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga thiooxidans DMS010] gi|224462299|gb|EEF78576.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga thiooxydans DMS010] Length = 383 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 133/341 (39%), Positives = 188/341 (55%), Gaps = 5/341 (1%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 K +N DDKR++N +D+NQL P KY WAW +L+A NHW P ++ M D+ ++ Sbjct: 48 NNAKAINADDKRVINGEADINQLAPFKYPWAWNYFLNANKNHWTPLDINMAQDVHDYR-- 105 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 + LT +ER + + L + +S+ L NI LA+ ++ PE + Y RQ +EEA+H+ T+ Sbjct: 106 HKLTLEERHVYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTY 165 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 Q+ I ++GLD+ E++N YR VP I K A T+ +D + F+ Sbjct: 166 QHCIETIGLDQSEIYNRYRVVPEIHQKIKLANDRLDTVMRSDIDLRDRDELENFVMSYAF 225 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 F +FEG WFY GF+ I +L R M G AEQ QYIMRDE +H +FGI V QI E Sbjct: 226 FAGIFEGSWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHASFGIRVCKQIMKEENI 285 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 +K + M EA E YA + +G + ++ ANRR Q+G E Sbjct: 286 TLDP---KKVQQMFEEADAAEETYAGYILRDPILGYSKEVHHGQFRYTANRRAKQLGFEE 342 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 F E PW+ E +++KEKNFFET+VTEYQ G LKWD Sbjct: 343 PFPGAEATLPWLDEQANMRKEKNFFETKVTEYQTGGGLKWD 383 >gi|154505112|ref|ZP_02041850.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149] gi|153794591|gb|EDN77011.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149] Length = 347 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 160/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ ++ +RM+ + ++N L+Y W Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPGGDTDIRLRRMIGGNTTNLNDFNNLRYTWVNNWYRQAMNNFWIPEEINLSQDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + LT++ER + L F +S+ N+ I +++ E L Q F+E V Sbjct: 67 DY---PNLTENERTAYNKILSFLVFLDSIQTANLPC-IGEYITANEINLCLSIQTFQECV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ R K + L T + + D L Sbjct: 123 HSQSYSYMLDSICSPVE------RNDILYQWKNDAHLLRRNTFIGDLYNEFQEKKDDFTL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K Sbjct: 177 LKVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILEMK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T E + + ML E EIA+ H + GL +Y+Q++ N R Sbjct: 237 KELPELFTPEHIEILKEMLKEGVRQEIAWGHYVIGNQIAGLTKEMITEYIQYLGNLRFTN 296 Query: 307 IGLEPLFKY-TENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G +P++ T+ P W+S+ + + +FFE + T Y + L D Sbjct: 297 LGFDPIYPDQTQEPDSMRWVSQYSNANMVKTDFFEAKSTAYAKSTALIDD 346 >gi|302867100|ref|YP_003835737.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029] gi|315506490|ref|YP_004085377.1| ribonucleotide reductase [Micromonospora sp. L5] gi|302569959|gb|ADL46161.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029] gi|315413109|gb|ADU11226.1| ribonucleotide reductase [Micromonospora sp. L5] Length = 342 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 105/324 (32%), Positives = 182/324 (56%), Gaps = 11/324 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++++ A N W EV + DLA L+ ER ++ R + FFA+ + Sbjct: 22 LRPMRYPRFFDRFKDAIKNTWTVEEVDLHSDLAD---LAKLSPAERHLVSRLVAFFATGD 78 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYR 150 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F + Sbjct: 79 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKERFAAFDAVE 138 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ T+ + FL +L F EG++FY FA + Sbjct: 139 NIPSIARKAEFCFRWIDSIF-ELRELRTRADRRAFLLNLICFAACIEGLFFYGAFAYVYF 197 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F DV+ ++ E P L+ E +++ + ML EA Sbjct: 198 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVVETVRAEEPDLFDDEMERQVKEMLAEAVE 257 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+++A + + +G G++ +Y+Q +A+RR +G+ P++ + NPF +M E+ D++ Sbjct: 258 CEVSFAEDLLGQGVPGMSLADMREYLQHVADRRLAVLGIAPMYG-SGNPFAFM-ELQDVQ 315 Query: 331 KEKNFFETRVTEYQQG--AELKWD 352 + NFFE RV+ YQ G + +D Sbjct: 316 ELSNFFERRVSAYQVGVTGSVTFD 339 >gi|254517517|ref|ZP_05129573.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp. 7_2_43FAA] gi|226911266|gb|EEH96467.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp. 7_2_43FAA] Length = 344 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 13/348 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ KRM+N + ++N +KY W + Y A NN W+P E+ + DL Sbjct: 6 KPLFNEFGDTETSKKRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLAQDLK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + N LT+DER + L F +S+ N+ I +++ E L QAF+EAV Sbjct: 66 DY---NKLTNDERTAYDKILSFLIFLDSIQTANL-SNINNYITASEVNLCLTIQAFQEAV 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ E R K + L + + QE L Sbjct: 122 HSQSYSYMLDTICSPEK------RNEILYQWKDDKILLERNKFIGELYNNFLEAPTQENL 175 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL +++ +++ Sbjct: 176 IKTIMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNILKELQ 235 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 +E P ++T E + + + M+ A EI++ + + G+N Y++++ N R Sbjct: 236 LEQPEIFTDEVKNQLKEMMKTAVEHEISWGNYVIGDNIQGINKNLINDYIKYLGNLRMKA 295 Query: 307 IGLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 IGL+ +++ + NP W+ + D + +FFE + T Y + L D Sbjct: 296 IGLDAIYEGHDNNPAAWVDILSDANSVKTDFFEAKSTAYAKAGALIDD 343 >gi|237752265|ref|ZP_04582745.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter winghamensis ATCC BAA-430] gi|229376507|gb|EEO26598.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter winghamensis ATCC BAA-430] Length = 343 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 94/342 (27%), Positives = 173/342 (50%), Gaps = 13/342 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + +V+++R+ + + +L +KY WA+ + N W P EV M D Sbjct: 7 KKIYNPNSKESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKR 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + GLT +E++ R L +SL NN++ + ++++PE L+RQAFEEA+ Sbjct: 67 DYSD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEAL 124 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ S+ + E++ M+R + +K ++ + LS + + L Sbjct: 125 HSQSYAVMVESISANTDEIYEMWRTDIQLKSKNDYIANVYEELS--------VNPTESIL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GFA +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 177 LKAMFANQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMINSLR 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E PHL+TK+ ++ M EA +E + +GL + +Y++++A+ R + Sbjct: 237 KEMPHLFTKDLIEEVLEMFREAVRVESTWGEYITQGQILGLTSEIIHEYIRYLADNRLTR 296 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGA 347 +GL L+ +P W+ + + NFFE VT Y +G+ Sbjct: 297 VGLPALYNAR-HPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 337 >gi|171913278|ref|ZP_02928748.1| ribonucleotide-diphosphate reductase subunit beta [Verrucomicrobium spinosum DSM 4136] Length = 361 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 115/329 (34%), Positives = 186/329 (56%), Gaps = 2/329 (0%) Query: 22 KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 KR++N R + LLPLKY WA++ Y NHW P ++ MQ D+ W+S + + + ER Sbjct: 26 KRVINGRQTMTFNLLPLKYQWAYDLYRVMKANHWEPEDIQMQKDVEQWRSVDQVAEVERW 85 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I +G+F+++E +V +NI + ++ PE + L R A EE +H+ + Y+I+SLG+ Sbjct: 86 IIMMGIGYFSAAEGIVGDNIQHVVRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E M+ ++P+I K + + + L + + +++FVF EG Sbjct: 146 NPHECEAMFEDIPTIVKKNAFVTRSSNALRRD-LDLTQIENKRLLAKNIFVFGQCMEGTQ 204 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY F ILSL R K GI ++Y +RDES H+ ++ + ENP +WT EF+++ Sbjct: 205 FYGLFGMILSLYRQGKFPGIGTMFRYTLRDESNHIKVFRNLFMDLIDENPEIWTPEFREE 264 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA LE + + +P VGL A E Y+ FIA+RR +GL L NP Sbjct: 265 LVELMKEAVALEKEFIRDCLPVAAVGLTAGEFELYIDFIADRRLASVGLPALTPGIVNPL 324 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 PW++E+ D++KE+NFFE VT+YQ+ + L Sbjct: 325 PWLAEMQDIRKEQNFFEGTVTDYQKASSL 353 >gi|172448|gb|AAA34987.1| ribonucleotide reductase subunit 2 (RNR2) [Saccharomyces cerevisiae] Length = 399 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 101/336 (30%), Positives = 155/336 (46%), Gaps = 33/336 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT---EVPMQDDLALWKSKNGLTDD 77 ++ +LN + L P+KY W+ Y + W E+ + D+ W N + ++ Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAY---EASFWTAETAEEIDLSKDIHDWN--NRMNEN 129 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 130 ERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDT 189 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D E FN +P I KA WAL++ Q DAD F + L F Sbjct: 190 YIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-A 236 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA I L + M G+ + I RDE LH +F + HL Sbjct: 237 SIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLF-------AHLKN 289 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K ++ EA +E Y + +P +G+NA QY++F+A+R G + +K Sbjct: 290 KPDPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK 349 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ENPF +M E I L + NFFE RV++YQ+ + Sbjct: 350 V-ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383 >gi|212697417|ref|ZP_03305545.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM 7454] gi|325846383|ref|ZP_08169352.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212675609|gb|EEB35216.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM 7454] gi|325481567|gb|EGC84607.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 352 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 171/348 (49%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I E +++ +R++N + ++N +KY W + Y A NN W+P E+ + D+ + Sbjct: 14 IFNEEGDIDLSKRRIINGNTTNLNDFNNVKYTWTNDWYRQAMNNFWIPEEINLNQDIKDY 73 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L+ E+ R L F +S+ N+ + +++ E L Q ++EA+HS Sbjct: 74 RN---LSKAEKKAYDRILSFLTYLDSIQTANL-PNLQTYITANEINLCLAIQTYQEAIHS 129 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ YI+ ++ + R K + L + KD + L Sbjct: 130 QSYSYILDTICSPDE------RTRILYLWKEDEHLLKRNKFIGDQYNEFIKDDSEFNLMR 183 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + + EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL +IN +K E Sbjct: 184 VLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSMINDLKEE 243 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+T E ++ ++L E EIA+ + GLN+ E Y++++ N R +G Sbjct: 244 RPDLFTDELKEFYLSLLKEGVEQEIAWGKYAIGDEIQGLNSQMIEDYIKYLGNLRAKGLG 303 Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 L +++ Y E P W+SE D + + +FFE +V+ Y + + ++ D Sbjct: 304 LGKIYEGYEEEPQSMKWVSEYSDPNQVKTDFFEGKVSAYSKSSVIEDD 351 >gi|149916691|ref|ZP_01905193.1| putative ribonucleoside-diphosphate reductase beta chain [Plesiocystis pacifica SIR-1] gi|149822408|gb|EDM81797.1| putative ribonucleoside-diphosphate reductase beta chain [Plesiocystis pacifica SIR-1] Length = 356 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 104/322 (32%), Positives = 168/322 (52%), Gaps = 8/322 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y + +Y A N W EV DL + G ER +I+R + FFA+ + Sbjct: 35 LRPMAYPDFYAQYRQAIRNTWTVEEVDFSTDLRDLAERMG--PAERHLIQRLVAFFATGD 92 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL++YRHL+ PE R YL RQ +EEA+H + ++ + D + F Sbjct: 93 SIVANNLVLSLYRHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPDQRHAAFAAVE 152 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + L++ T+++ G ++FL +L F EG++FY FA + Sbjct: 153 TIPSIRRKAEFCLRWQDTVAAIPRLDG-PAHRRQFLLNLICFAACTEGLFFYGAFAYVYF 211 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES H+ F VI+ ++ + P L+ E + M+ EA Sbjct: 212 LRSRGLLHGLAAGTNWVFRDESAHMAFAFSVIDVVRDQEPELFDAELEAAVVEMIEEAVA 271 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+A+A + + G GL Y+++ A++R ++G+ + T NP +M E+ D+ Sbjct: 272 CEVAFAEDLLGLGVAGLTVADLRAYLEYCADQRLQRLGMATRYGST-NPLSFM-ELQDIP 329 Query: 331 KEKNFFETRVTEYQQGAELKWD 352 + NFFE RV+ YQ G D Sbjct: 330 ELANFFERRVSAYQHGVSGTID 351 >gi|114621164|ref|XP_001153859.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] gi|332214017|ref|XP_003256123.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like [Nomascus leucogenys] gi|332830969|ref|XP_003311933.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Pan troglodytes] gi|119612248|gb|EAW91842.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_c [Homo sapiens] gi|194385642|dbj|BAG65196.1| unnamed protein product [Homo sapiens] Length = 297 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 91/308 (29%), Positives = 146/308 (47%), Gaps = 28/308 (9%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V Sbjct: 1 MYKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161 + + PE R + Q E VHS + +I + D + FN +P + KA+W Sbjct: 58 SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 AL++ + + V + EG++F FA I L + M G+ Sbjct: 118 ALRWIAD-------------RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLT 164 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I RDE LH +F + L K +++ R ++ +A +E + E +P Sbjct: 165 FSNELISRDEGLHCDFACLMFQY-------LVNKPSEERVREIIVDAVKIEQEFLTEALP 217 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 G +G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV+ Sbjct: 218 VGLIGMNCILMKQYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVS 275 Query: 342 EYQQGAEL 349 EYQ+ A + Sbjct: 276 EYQRFAVM 283 >gi|148676854|gb|EDL08801.1| ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus] Length = 297 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 91/308 (29%), Positives = 145/308 (47%), Gaps = 28/308 (9%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V Sbjct: 1 MYKQAQASFWTAEEVDLSKDLPHW---NKLKSDEKYFISHILAFFAASDGIVNENLVERF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161 + + PE R + Q E VHS + +I + D + FN +P + KA+W Sbjct: 58 SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 AL++ + + V + EG++F FA I L + M G+ Sbjct: 118 ALRWIAD-------------RKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLT 164 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I RDE LH +F + L K + + R ++ +A +E + E +P Sbjct: 165 FSNELISRDEGLHCDFACLMFQY-------LVNKPSEDRVREIIADAVQIEQEFLTEALP 217 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 G +G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV+ Sbjct: 218 VGLIGMNCVLMKQYIEFVADRLLGELGFSKIFQ-AENPFDFM-ENISLEGKTNFFEKRVS 275 Query: 342 EYQQGAEL 349 EYQ+ A + Sbjct: 276 EYQRFAVM 283 >gi|15639047|ref|NP_218493.1| ribonucleotide-diphosphate reductase subunit beta [Treponema pallidum subsp. pallidum str. Nichols] gi|189025287|ref|YP_001933059.1| ribonucleotide-diphosphate reductase subunit beta [Treponema pallidum subsp. pallidum SS14] gi|6093976|sp|O83092|RIR2_TREPA RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|3322311|gb|AAC65049.1| ribonucleoside-diphosphate reductase, subunit beta (nrdB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017862|gb|ACD70480.1| ribonucleoside-diphosphate reductase, subunit beta [Treponema pallidum subsp. pallidum SS14] gi|291059468|gb|ADD72203.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema pallidum subsp. pallidum str. Chicago] Length = 351 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 88/349 (25%), Positives = 159/349 (45%), Gaps = 15/349 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + + + +RM+ + ++N +KY W + Y A NN W+P E+ M D+ Sbjct: 12 ALFNEAGDIELHKRRMVGGNTTNLNDFNNMKYPWVSKWYRQAMNNFWIPEEINMSSDVQD 71 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +++ L+ E+ + L F +S+ N+ I ++++ E L QAF+EAVH Sbjct: 72 YRN---LSAIEKTAYDKILSFLIFLDSIQTANL-PNIGQYITANEINLCLTIQAFQEAVH 127 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y++ ++ E R K + L + D L Sbjct: 128 SQSYSYMLDTICSPEE------RNDILYQWKDDEHLLARNKFIGNLYNEFQDDKSVLALL 181 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + V EG++FY+GF +LGR NKM G ++ +YI RDE+ HL +I +++ Sbjct: 182 KVAIANYVLEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQELQK 241 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P ++T + R M+ E EI + + GLN Y++++ N RC + Sbjct: 242 EEPQVFTARNVRLFRDMIREGCEQEIKWGDYVIGDQIPGLNRHMVADYIRYLGNLRCENL 301 Query: 308 GLEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 G EPL++ W+S+ + + +FFE + T Y + + + D Sbjct: 302 GFEPLYEGHRVEPESMSWVSQYSNANLIKTDFFEAKSTAYAKSSAMVDD 350 >gi|330837704|ref|YP_004412345.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374] gi|329749607|gb|AEC02963.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374] Length = 360 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 163/350 (46%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 PI +D +RM+ + ++N LKYGW + Y A NN W+P E+ M D+ Sbjct: 20 KPIFNEHGDTGLDKRRMVGGNTTNLNDFNNLKYGWTSDWYRQAMNNFWIPEEINMNTDVQ 79 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L+ E+ + L F +S+ N+ + + ++ E L QAF+EA+ Sbjct: 80 DYR---RLSPAEKTAYDKILSFLIFLDSVQTANL-PNLAQFITANEVNLCLTIQAFQEAI 135 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ + R + + L + + D + Sbjct: 136 HSQSYSYMLDTICSPDE------RTGILYQWRDDAHLLARNKFIGDLYQNFMVNQDVCQI 189 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++FY+GF +LGR NKM G ++ +YI RDE+ HL ++ +++ Sbjct: 190 VKTMVANYILEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDETTHLWLFRSILREMQ 249 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P ++T + R M+ + EIA+ H + VGLN Y+Q++ N RC Sbjct: 250 KEEPAMFTPNLVDEYRAMIKQGADQEIAWGHYVIGDDIVGLNKDMVTDYIQYLGNLRCTD 309 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G +P+++ + + P W+ + + + +FFE R T Y + L D Sbjct: 310 LGFQPIYEGHDKEPETMKWVGQYSNANLIKTDFFEARNTAYAKSTSLLDD 359 >gi|50949848|emb|CAH10473.1| hypothetical protein [Homo sapiens] Length = 297 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 91/308 (29%), Positives = 146/308 (47%), Gaps = 28/308 (9%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V Sbjct: 1 MYKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161 + + PE R + Q E VHS + +I + D + FN +P + KA+W Sbjct: 58 SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 AL++ + + V + EG++F FA I L + M G+ Sbjct: 118 ALRWIAD-------------RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLT 164 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I RDE LH +F + L K +++ R ++ +A +E + E +P Sbjct: 165 FSNELISRDEGLHCDFACLMFQY-------LVNKPPEERVREIIVDAVKIEQEFLTEALP 217 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 G +G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV+ Sbjct: 218 VGLIGMNCILMKQYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVS 275 Query: 342 EYQQGAEL 349 EYQ+ A + Sbjct: 276 EYQRFAVM 283 >gi|1710399|sp|P50649|RIR2_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase small subunit; AltName: Full=Ribonucleotide reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit gi|349790|gb|AAA29754.1| ribonucleotide reductase R2 subunit [Plasmodium falciparum] Length = 322 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 31/333 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +R+LN SD L P+ Y + Y A W E+ DL ++ L ++E+ Sbjct: 2 RRILNKESDRFTLYPILYPDVFPFYKKAEACFWTAEEIDYSSDLKDFE---KLNENEKHF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ ++ R + E +++ Q E +HS T+ +I + D Sbjct: 59 IKHVLAFFAASDGIVLENLAVSFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F+ +P++ KA WA ++ D + V EG Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWIN--------------DTNSFAERIVANACVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + F F I + NK+ G+ + I RDE LH +F + + + + P Sbjct: 165 ILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLPE------- 217 Query: 259 QKSRTMLHEA--TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G +F ++ Sbjct: 218 QMVQNIVKEAGGVEVEKSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HS 276 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +NPF WM +I L+ + NFFE RV +YQ+ + Sbjct: 277 KNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 308 >gi|298207002|ref|YP_003715181.1| probable ribonucleoside-diphosphate reductase small chain [Croceibacter atlanticus HTCC2559] gi|83849636|gb|EAP87504.1| probable ribonucleoside-diphosphate reductase small chain [Croceibacter atlanticus HTCC2559] Length = 325 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 89/334 (26%), Positives = 155/334 (46%), Gaps = 28/334 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + P+++ WE Y W E+ + DL W S L DDER Sbjct: 5 EPILQKNENRFVIFPIQHNDIWEWYKKMEACFWTAEEIDLHQDLTDWNS--KLNDDERYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F P+I KA+WAL++ ++ + + + + EG Sbjct: 123 EAEKDQLFRAIEVFPAIKKKADWALKWIES---------------DSFAERLIAFAAVEG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + N HL K + Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHL------HNKHLVNKVSK 221 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ R ++ +A +E + E++P +G+N+ QY++F+ +R ++ E + T N Sbjct: 222 ERIREIIVDALNIEREFITESLPASLIGMNSNLMTQYLEFVTDRLLLELECEKEYN-TAN 280 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PF +M +I L+ + NFFE RV +YQ+ + D Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGDYQKAGVMDQD 313 >gi|310823070|ref|YP_003955428.1| ribonucleoside-diphosphate reductase subunit beta [Stigmatella aurantiaca DW4/3-1] gi|309396142|gb|ADO73601.1| Ribonucleoside-diphosphate reductase, beta subunit [Stigmatella aurantiaca DW4/3-1] Length = 336 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 102/316 (32%), Positives = 166/316 (52%), Gaps = 8/316 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y +E Y +A N W EV DL +S +TD ER +I R + FFA+ + Sbjct: 11 LRPMAYPVFFEMYRNAIKNTWTVEEVDFSTDLVDLRS--KMTDAERHLIHRLVAFFATGD 68 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + D + F Sbjct: 69 SIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPADRAKAFAAID 128 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + L++ ++ + T++ + FL +L F EG++F+ FA + Sbjct: 129 NIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLLNLICFAGCIEGLFFFAAFAYVYF 187 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES H+ F + I + E P L+ Q M+ EA Sbjct: 188 LRSKGLLHGLAAGTNWVFRDESTHMAFAFEAIRVARQEEPDLFDARMQADVVAMMREAVE 247 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E +A + + G GL+ QY++++A++R +GL P+F +N P+M + D++ Sbjct: 248 CETLFAQDLLSGGVAGLSVQEMRQYLEYVADQRLTMLGLAPVF-RVKNSLPFMD-LQDVQ 305 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE RV+ YQ Sbjct: 306 ELTNFFERRVSAYQVA 321 >gi|32266105|ref|NP_860137.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter hepaticus ATCC 51449] gi|32262154|gb|AAP77203.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC 51449] Length = 349 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 176/347 (50%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I E +V D+++ + + L +KY WA+ + N W P EV M D Sbjct: 13 KQIYNPESTESVADRKIFGGNPTSMFDLNKIKYQWAYNLWKVMLANTWFPEEVNMTPDKR 72 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + GLT E+L R L +SL NN++ + ++++PE L+RQA+EEA+ Sbjct: 73 DYN--GGLTAQEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEEAL 130 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ S+ + E++NM+R + +K + L+ K+ +++ L Sbjct: 131 HSQSYAVMVESISANTDEIYNMWRVDMQLRSKNDNIANVYIELA--------KNPNEQNL 182 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++I+ ++ Sbjct: 183 LKAMFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMISSLR 242 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E HL+T +++ M +A +E + +GL + +Y+Q++A+ R Sbjct: 243 KEQGHLFTPSLEEEVVEMFKKAVEIESQWGEYITQGQILGLTSEIIREYIQYLADARLKA 302 Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352 +GL L+ ++NP W+ + ++ NFFE +VT Y +G+ + +D Sbjct: 303 VGLPQLYG-SKNPIKWVDQFASFNDQKTNFFEAKVTNYSKGS-INFD 347 >gi|82538850|ref|XP_723858.1| ribonucleotide reductase small chain [Plasmodium yoelii yoelii str. 17XNL] gi|145580416|pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580417|pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580418|pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580419|pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580420|pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580421|pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580422|pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|145580423|pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) gi|23478298|gb|EAA15423.1| Ribonucleotide reductase, small chain [Plasmodium yoelii yoelii] Length = 349 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 159/338 (47%), Gaps = 29/338 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++++LN S+ L P+ Y W Y A + W E+ + DL ++ L Sbjct: 24 QKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFE---KL 80 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 +E+ IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ + Sbjct: 81 NVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLL 140 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + DE E F+ +P+I KA WA ++ D + V Sbjct: 141 IDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWIN--------------DTNSFAERIV 186 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 EG+ F F I + NK+ G+ + I RDE LH +F + + ++ + P Sbjct: 187 ANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE 246 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G Sbjct: 247 NV-------VQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK 299 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +F +++NPF WM +I L+ + NFFE RV +YQ+ + Sbjct: 300 VF-HSKNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335 >gi|256545921|ref|ZP_05473276.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus vaginalis ATCC 51170] gi|256398343|gb|EEU11965.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus vaginalis ATCC 51170] Length = 352 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 171/348 (49%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I E +++ +R++N + ++N +KY W + Y A NN W+P E+ + D+ + Sbjct: 14 IFNEEGDIDLSKRRIINGNTTNLNDFNNVKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L+ E+ R L F +S+ N+ + +++ E L Q ++EA+HS Sbjct: 74 RN---LSKAEKKAYDRILSFLTYLDSIQTANL-PNLQTYITANEINLCLAIQTYQEAIHS 129 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ YI+ ++ + R K + L + KD + L Sbjct: 130 QSYSYILDTICSPDE------RTRILYLWKEDDHLLKRNKFIGDQYNEFIKDDSEFNLMR 183 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + + EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL +IN +K E Sbjct: 184 VLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSMINDLKEE 243 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+T E ++ ++L E EIA+ + GLN+ E Y++++ N R +G Sbjct: 244 RPDLFTDELKEFYLSLLKEGVEQEIAWGKYAIGDEIQGLNSQMIEDYIKYLGNLRAKGLG 303 Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 L +++ Y + P W+SE D + + +FFE +V+ Y + + ++ D Sbjct: 304 LGTIYEGYEDEPQSMKWVSEYSDPNQVKTDFFEGKVSAYSKSSVIEDD 351 >gi|210616053|ref|ZP_03290925.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787] gi|210149961|gb|EEA80970.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787] Length = 355 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 161/349 (46%), Gaps = 15/349 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + V ++M+ + ++N +KY W Y A NN W+P E+ + D+ Sbjct: 16 PLFNPNGDIQVQKRKMIGGNTTNLNDFNNMKYTWVSGWYRQAMNNFWIPEEINLGVDIKD 75 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +++ L E+ + L F +S+ N+ I +++ E L QAF+EAVH Sbjct: 76 YRN---LPKAEKRAYDKILSFLIFLDSIQTANL-PGISEYITANEVNLCLSIQAFQEAVH 131 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y++ ++ + R K + L + + E L Sbjct: 132 SQSYSYMLDTICEPQE------RNEVLYQWKEDEHLLARNEFIGNLYNAFQTEKSMEMLV 185 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 V + EG++FY+GF +LGR M G ++ +YI RDE+ HL +++ ++K Sbjct: 186 KTIVANYILEGIYFYSGFMFFYNLGRNQLMPGSVQEIRYINRDENTHLWLFRNILIELKK 245 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P L+T+++ + R+M+ E EI + H + GLN Y+Q++ N RC + Sbjct: 246 EQPDLFTEQYIDEYRSMIKEGCEQEIKWGHYVIGDDVQGLNREMITDYVQYLGNLRCTNL 305 Query: 308 GLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 G P+++ E W+S+ + + +FFE R T Y + + L D Sbjct: 306 GFAPIYEGHETEPESMRWVSQYSNANAIKTDFFEARSTAYAKSSALVDD 354 >gi|311898297|dbj|BAJ30705.1| putative ribonucleoside-diphosphate reductase subunit beta [Kitasatospora setae KM-6054] Length = 339 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 107/340 (31%), Positives = 183/340 (53%), Gaps = 11/340 (3%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 D K+ML L P++Y +++Y A N W EV + D+A L++ Sbjct: 3 TEDRKKMLLDPGFELTLRPMRYPSFYDRYRDAIKNTWTVEEVDLHSDVAD---LAKLSEG 59 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER MI R + FFA+ +S+V+NN+VL++Y+H+++PE R YL RQ FEEAVH + ++ + Sbjct: 60 ERHMIGRLVAFFATGDSIVSNNVVLSLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDT 119 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D + F +PSI KA + +Y + + +K+ + FL +L F Sbjct: 120 YLPDPEDRNAAFAAVENIPSIAQKAQFCFKYMNAV-DHIDSLRSKEDRRAFLLNLICFAA 178 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++FY FA + + G+A ++ RDES+H++F V++ ++ E P L+ Sbjct: 179 CVEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDESMHMDFAFSVVDTVREEEPDLFD 238 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + ++ ML EA E+ +A + +G G+N S +Y+Q +A++R ++GL + Sbjct: 239 DKMARQVTEMLEEAVEAELQFARDLCGEGLPGMNTESMREYLQAVADQRLARLGLPIRYG 298 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352 T NPF +M E+ ++++ NFFE RV+ YQ + +D Sbjct: 299 ST-NPFGFM-ELQNVQELTNFFERRVSAYQIAVEGSVSFD 336 >gi|303237757|ref|ZP_07324316.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella disiens FB035-09AN] gi|302482043|gb|EFL45079.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella disiens FB035-09AN] Length = 349 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 158/355 (44%), Gaps = 15/355 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + + + + ++ +RM+ + ++N +KY W + Y A NN W+P E+ + Sbjct: 4 DKLQRNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMKYVWVSDWYRQAMNNFWIPEEINL 63 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ + L ER + L F +SL +NN+ I +++ E L Q Sbjct: 64 AQDIKDY---PNLPQAERTAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQT 119 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 F+E +HS ++ Y++ ++ E R K + L T + + Sbjct: 120 FQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLKRNTFIGDCYNEFQEKR 173 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++ Sbjct: 174 DKFALMKACMANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNI 233 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 I ++K E P L+T E M+ E EIA+ + GL Y+ ++ N Sbjct: 234 IVELKQEQPELFTPERIAVYEEMMREGVRQEIAWGQYVIGDKVQGLTQQMVADYIHYLGN 293 Query: 302 RRCHQIGLEPLFKYTEN---PFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 R +G L+++ +N W+++ + K + +FFE + T Y + L D Sbjct: 294 LRWRSLGFGNLYEHNQNEPDDMQWVAQYSNANKVKTDFFEAKSTAYAKSTALIDD 348 >gi|271967540|ref|YP_003341736.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] gi|270510715|gb|ACZ88993.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM 43021] Length = 331 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 103/324 (31%), Positives = 173/324 (53%), Gaps = 11/324 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y +A N W EV + DLA +T +ER +I R + FFA+ + Sbjct: 11 LRPMRYPEFYERYRAAIRNTWTVEEVDLNSDLAD---LARMTPEERHLINRLVAFFATGD 67 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H++ PE R YL RQ FEEAVH + ++ + D E F Sbjct: 68 SIVANNLVLNLYQHVNAPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDHDERVKAFAAVE 127 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ +L +++ + FL +L F EG++FY FA + Sbjct: 128 HIPSIRNKAEFCFRWIDSLGGLDRLE-SREDRRAFLLNLICFAACIEGLFFYGAFAYVYW 186 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDES+H+ F V++ ++ E P L+ + + M+ EA Sbjct: 187 FRSRGLLSGLATGTNWVFRDESMHMEFAFSVVDTVRAEEPDLFDDKLGAQVTQMIEEAVE 246 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+A+A + G G+N QY++++A++R ++ + T NPF +M E+ D++ Sbjct: 247 AELAFAADLCGDGMSGMNVEQMRQYLEYVADQRLVRLRFPVRYG-TANPFAFM-ELQDVQ 304 Query: 331 KEKNFFETRVTEYQQG--AELKWD 352 + NFFE RV+ YQ + +D Sbjct: 305 ELANFFERRVSAYQVAVEGNVSFD 328 >gi|308490981|ref|XP_003107682.1| CRE-RNR-2 protein [Caenorhabditis remanei] gi|308250551|gb|EFO94503.1| CRE-RNR-2 protein [Caenorhabditis remanei] Length = 377 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 87/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + + PL++ W+ Y A + W EV + D+ W+ NG DE+ Sbjct: 57 NEPLLQDLDNRFVIFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWEKMNG---DEQY 113 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+ + E R + Q E +HS + +I + Sbjct: 114 FISRVLAFFAASDGIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYSKLIETYIR 173 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 DE E FN E I KA+WA+++ + + + + E Sbjct: 174 DEKERLTLFNAIFEFEFIKKKADWAMKWI-------------SDKKASFAERLIAFAAVE 220 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I L + M G+ + I RDE LH +F + + ++ K Sbjct: 221 GIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYSMLQ-------NKLT 273 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 Q++ ++ +A +E + E +P +G+N QY++F+A+ ++G + L+ + Sbjct: 274 QERIFEIIRDAVCIEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLAELGCDKLYNV-K 332 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPF +M E I + + NFFE RV+EYQ+ + Sbjct: 333 NPFDFM-ENISIDGKTNFFEKRVSEYQRPGVMS 364 >gi|238023979|ref|YP_002908211.1| Ribonucleotide reductase subunit beta [Burkholderia glumae BGR1] gi|237878644|gb|ACR30976.1| Ribonucleotide reductase, beta subunit [Burkholderia glumae BGR1] Length = 337 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 134/337 (39%), Positives = 186/337 (55%), Gaps = 5/337 (1%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K V+DKR++N D+NQL P +Y WAWE +LSA NHW P E+ M DD+ + + L Sbjct: 5 KPARVEDKRVVNGAGDINQLAPFRYAWAWECFLSANKNHWTPLEISMSDDVHDFHHR--L 62 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + + L + +S+ L NI LA+ ++ PE + Y RQ +EEA+H+ T+Q+ Sbjct: 63 SPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHC 122 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 I SLGLD+ E++N YR VP I AK + + + P +D EF F Sbjct: 123 IESLGLDQQEIYNRYRVVPQIHAKIALSNRRLNRMLEPGLDLHDRDTLHEFALAYLFFAA 182 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 VFEG WFY GF+ + +L R M A+Q+QYIMRDE LH FGI VI Q+ E Sbjct: 183 VFEGTWFYNGFSPVFALQRRGLMKATAQQFQYIMRDEVLHCGFGIRVIRQLLEEEHLRLD 242 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + + EA E AYA + +G +A + +FIANRR Q+ + F Sbjct: 243 P---HAVQQIWEEAEAAERAYAQYILRDPILGYSAELHCEQFRFIANRRATQLSMPAPFP 299 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 N PW+ E +L+KEKNFFETRVT+YQ G L W Sbjct: 300 GATNALPWLDEQANLRKEKNFFETRVTDYQSGGALDW 336 >gi|239628850|ref|ZP_04671881.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518996|gb|EEQ58862.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 347 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 158/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + + + +RM+ + ++N +KY WA Y A NN W+P E+ + D+ Sbjct: 7 KSLFNPQGDTDKNSRRMIGGNTTNLNDFNNMKYTWASAWYRQAMNNFWIPEEINLSTDVK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ L+ ER + L F +S+ N+ I ++++ E L Q F+EAV Sbjct: 67 DYRN---LSAAEREAFDKILSFLVFLDSIQTANL-PCIGQYITANEVNLCLTIQGFQEAV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ R+ K + L T + + D L Sbjct: 123 HSQSYSYMLDSICSPVE------RDRILYQWKEDGHLLKRNTFIGNLYNEFQERKDDITL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I ++K Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFRSMIGELK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + + ML E EI + + GL Y++++ N R Sbjct: 237 KEEPGLFTPDNVKMLEDMLREGVSQEIEWGCYVIGDEVPGLTKDMVSSYIKYLGNLRWTG 296 Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G EPL++ W+++ + + +FFE + T Y + A + D Sbjct: 297 LGFEPLYEGYGKEPESMAWVNQYSNANMVKTDFFEAKSTAYAKSAAIIDD 346 >gi|330941351|gb|EGH44203.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 317 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 158/251 (62%), Positives = 202/251 (80%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQAFE Sbjct: 127 DTALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQAFE 186 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT + D+ Sbjct: 187 EAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVETDK 246 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGIDVIN Sbjct: 247 ELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGIDVIN 306 Query: 244 QIKIENPHLWT 254 QIKIENPHLW Sbjct: 307 QIKIENPHLWD 317 >gi|227541|prf||1706181A ribonucleotide reductase Length = 290 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 86/302 (28%), Positives = 140/302 (46%), Gaps = 28/302 (9%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 + W EV + D+ W+S L +ER I L FFA+S+ +V N+V + + Sbjct: 1 SFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQIT 57 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQT 168 E R + Q E +HS + +I + D E FN +P + KA+WAL++ Sbjct: 58 EARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWI-- 115 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 + + V + EG++F FA I L + M G+ + I Sbjct: 116 -----------GDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 164 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 RDE LH +F + HL K +++ R ++ A +E + E +P +G+N Sbjct: 165 RDEGLHCDFACLMFK-------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMN 217 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 +QY++F+A+R ++G +F ENPF +M E I L+ + NFFE RV EYQ+ Sbjct: 218 CTLMKQYIEFVADRLMLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGV 275 Query: 349 LK 350 + Sbjct: 276 MS 277 >gi|330467634|ref|YP_004405377.1| ribonucleoside-diphosphate reductase [Verrucosispora maris AB-18-032] gi|328810605|gb|AEB44777.1| Ribonucleoside-diphosphate reductase [Verrucosispora maris AB-18-032] Length = 342 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 108/326 (33%), Positives = 178/326 (54%), Gaps = 13/326 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++++ A N W EV + DLA L+ E+ ++ R + FFA+ + Sbjct: 22 LRPMRYPQFFDRFKDAIRNTWTVEEVDLHADLAD---LAKLSPAEQHLVSRLVAFFATGD 78 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYR 150 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE E F Sbjct: 79 TIVANNLVLNLYQHINSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEKQRYEAFAAVE 138 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ T+ + FL +L F EG++FY FA + Sbjct: 139 NIPSIARKAEFCFKWIDSIF-ELRELKTRADRRAFLLNLICFAACIEGLFFYGAFAYVYF 197 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F DV++ ++ E P L+ E +Q+ R ML EA Sbjct: 198 LRSRGVLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDAEMEQQVRDMLAEAVD 257 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + + +G G+ QY+Q +A+RR +G+ P++ T NPF +M E+ D++ Sbjct: 258 CEVQFAADLLEQGVSGMPLADMRQYLQHVADRRLAMLGIAPMYGST-NPFAFM-ELQDVQ 315 Query: 331 KEKNFFETRVTEYQQG----AELKWD 352 + NFFE RV+ YQ G D Sbjct: 316 ELSNFFERRVSAYQVGVTGTVAFDDD 341 >gi|294055010|ref|YP_003548668.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis DSM 45221] gi|293614343|gb|ADE54498.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis DSM 45221] Length = 360 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 124/318 (38%), Positives = 196/318 (61%), Gaps = 2/318 (0%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 +LPLKY WA++ Y + NNHW P ++PMQ D+ LW+S + L+D ER +IK +G+F++ Sbjct: 37 FNILPLKYQWAYDLYKTMKNNHWEPEDIPMQKDVELWRSAD-LSDAERWIIKMAIGYFSA 95 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 +E +V +NI ++ PE + L R A EE +H+ + Y+I+SLG++ E M+ + Sbjct: 96 AEGIVGDNIQHVTRELVTAPELKLLLGRHAHEENIHADSLVYMISSLGINPHECEAMFED 155 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + +I K + + ++ L T T D Q F +++F+F EG FY F +LSL Sbjct: 156 IDTIERKTAFVVNNSRGLRRDMDLTTTAD-KQAFTKNMFLFGQCMEGTQFYGLFGMVLSL 214 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 R NK GI + ++Y +RDES H+ ++I + EN +WT EF+++ R ++ EA L Sbjct: 215 YRQNKFPGIGQMFRYTLRDESNHIEVFRNLIMDLIEENEDVWTPEFREELRDLMREAVTL 274 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E + + +P VGL+A QY+ +IA+RR +GL PL +NPFPW++E++D+KK Sbjct: 275 EKDFIRDCLPVNSVGLSADEFCQYIDYIADRRLEGVGLAPLSPGVDNPFPWLAEMMDIKK 334 Query: 332 EKNFFETRVTEYQQGAEL 349 E+NFFE RVTEYQ+ + L Sbjct: 335 EQNFFEGRVTEYQKASAL 352 >gi|162452149|ref|YP_001614516.1| ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce 56'] gi|161162731|emb|CAN94036.1| Ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce 56'] Length = 339 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 99/320 (30%), Positives = 169/320 (52%), Gaps = 9/320 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y +E Y SA N W EV D+ +TD ER +++R + FFA+ + Sbjct: 19 LRPMAYPAFFEMYRSAIKNTWTVEEVDFSTDVGD---LRKMTDAERHLVQRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +YRH++ PE R YL RQ +EEA+H + ++ + D + F Sbjct: 76 SIVANNLVLNLYRHINAPEARMYLSRQLYEEALHVQFYLTLLDTYIPDPEDRHRAFAAVE 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA++ +++ ++ S T+ + FL +L F EG++F+ FA + Sbjct: 136 NIPSIRQKADFCMRWLDSVESLG-RLDTRAERRRFLLNLICFAACVEGLFFFGAFAYVYF 194 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES H+ F +V++ + E P L+ + M+ EA Sbjct: 195 LRSRGLLHGLAAGTSWVFRDESAHMRFAFEVVSTARREEPELFDAGLARSILDMMDEAIA 254 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E +A + + G G++A +Y++F A++R +G+ + +NPF +M + D++ Sbjct: 255 CEARFAEDLLGAGVAGMSARDVRRYLEFCADQRLATLGMPKRYG-AKNPFSFMD-LQDVQ 312 Query: 331 KEKNFFETRVTEYQQGAELK 350 + NFFE RV+ YQ G + Sbjct: 313 EVTNFFERRVSAYQVGVSGE 332 >gi|11544904|emb|CAC17630.1| class I ribonucleotide-diphosphate reductase small subunit chain [Streptomyces jumonjinensis] Length = 322 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 99/310 (31%), Positives = 166/310 (53%), Gaps = 9/310 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+ LT E+ +I R + FFA+ + Sbjct: 19 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVTD---LAKLTPGEQHLIGRLVAFFATGD 75 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F Sbjct: 76 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAVE 135 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ D + FL +L F EG++FY FA + Sbjct: 136 NIPSIREKAQFCFKWMDSVEKIDQLETQADR-RRFLLNLICFAACIEGLFFYGAFAYVYW 194 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML EA Sbjct: 195 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLQEAVE 254 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ + + G G+N S +Y+Q +A++R ++G P++ +ENPF +M E+ ++ Sbjct: 255 AELQFGSDLCGDGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SENPFSFM-ELQGVQ 312 Query: 331 KEKNFFETRV 340 + NFFE R Sbjct: 313 ELTNFFERRP 322 >gi|291276761|ref|YP_003516533.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter mustelae 12198] gi|290963955|emb|CBG39794.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter mustelae 12198] Length = 344 Score = 291 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 174/346 (50%), Gaps = 13/346 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I E +V+D+++ + + L +KY WA++ + + N W P EV M +D Sbjct: 9 KKIYNPESIESVNDRKIFGGNPTSMFDLNKIKYQWAYDLWKTMLANTWFPEEVSMNEDKR 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + LT E+L R L +SL NN++ + ++++PE L+RQA+EEA+ Sbjct: 69 DYNNL--LTAQEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEEAL 126 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ S+ + E+++M+R + +K ++ L+ + + + Sbjct: 127 HSQSYAVMVESISANTDEIYDMWRVDMQLKSKNDYIANVYMKLAQ--------NPTERNI 178 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GFA +L KM+G ++ ++I RDE HL ++I +K Sbjct: 179 VKAMFANQILEGIYFYSGFAFFYALASTGKMLGSSQMIRFIQRDEVTHLILFQNMIRTLK 238 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+ K+ +++ M A +E A+ +GL QY+Q++A++R + Sbjct: 239 KERPDLFDKDLEEEIVEMFRRAVEIEAAWGEYITQGQILGLTGEVIHQYIQYLADQRLSK 298 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKW 351 +G+ L+ E+P W+ + ++ NFFE +VT Y +G+ + Sbjct: 299 VGMPKLYNV-EHPIKWVEQYASFNEQRTNFFEAKVTNYAKGSLIDD 343 >gi|187932511|ref|YP_001884520.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium botulinum B str. Eklund 17B] gi|187720664|gb|ACD21885.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum B str. Eklund 17B] Length = 344 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 99/348 (28%), Positives = 167/348 (47%), Gaps = 13/348 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ + KR++N + ++N +KY WA + Y NN W+P E+ + DL Sbjct: 6 KPLFNEFGDRDPRLKRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K L DER + L F +S+ N+ I +++ E L Q+F+EAV Sbjct: 66 DYK---KLLPDERTAYDKILSFLIFLDSIQTANL-SNINSYITASEINLCLTIQSFQEAV 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ E R K + L + + ++ L Sbjct: 122 HSQSYSYMLDSICSPEE------RNEILYQWKDDEILLKRNKFIGDLYNEFINNPNEYNL 175 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++ Sbjct: 176 IKTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQ 235 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 ENP +T + + + R M+H EI + H + G+N E Y++++ N+R + Sbjct: 236 SENPESFTADLKNELREMMHIGVENEILWGHYVIGDKIQGINKKLIEDYIKYLGNKRLKE 295 Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 IGLEPLF Y ENP W+ V + + +FFE + T Y + + L D Sbjct: 296 IGLEPLFSGYEENPATWVDVVANSNSVKTDFFEAKSTAYAKVSTLIDD 343 >gi|227871657|ref|ZP_03990072.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268] gi|227842499|gb|EEJ52714.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268] Length = 347 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 165/350 (47%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ E ++V ++RM+N + ++N ++Y W + Y A NN W+P E+ + D + Sbjct: 7 KPLFNPEGDIDVRNRRMINFNTTNINDFNNMRYEWVSDWYRQAMNNFWVPEEINLNQDKS 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L++ ER + L F +SL + N+ I ++++ E L Q F+E + Sbjct: 67 DY---PKLSEAERRAYDKILSFLVYLDSLQSANL-PNISQYVTANEVNLCLSIQTFQECI 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ R K + L + + ++ Sbjct: 123 HSQSYSYMLDTICNPTE------RNDILYQWKTDEHLLRRNEFIGNLYNEFVEKQSKDSF 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL F +++ ++K Sbjct: 177 LRVCIANFILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWFFRNMLLELK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+ + + M+ + EIA+ + GLN E Y++++ N R Sbjct: 237 KEEPELFDEAHIAEITEMVKKGVEQEIAWGQYVIGDSIPGLNGKMVEDYIRYLGNLRYRS 296 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +GL L++ Y + P W+S+ D + +FFE R T Y + ++ D Sbjct: 297 LGLPNLYEGYEKEPESMKWVSQYADANMVKTDFFEARSTAYAKSTAIEDD 346 >gi|325475472|gb|EGC78653.1| ribonucleoside-diphosphate reductase [Treponema denticola F0402] Length = 351 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 162/350 (46%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + ++M+ + ++N +KY WA + Y A NN W+P E+ M D+ Sbjct: 11 KALFNENGDIETHKRKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQ 70 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L+ E+ + L F +S+ N+ + ++++ E L QAF+EAV Sbjct: 71 DYR---KLSGPEKTAYDKILSFLIFLDSIQTANL-PNVGQYVTANEVNLCLTIQAFQEAV 126 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ E R K + L + D Sbjct: 127 HSQSYSYMLDTICSPEE------RTEILYQWKDDEHLLRRNKFIGDLYNEFQSDKSALAF 180 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V + EG++FY+GF +LGR NKM G ++ +YI RDE+ HL +I +++ Sbjct: 181 LKVCVANYILEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSMIQELQ 240 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + + R M+ E EIA+ + + GLN+ Y+Q++ N RC Sbjct: 241 KEEPQLFTPQNVELFRGMIREGCEQEIAWGNYVIGNDIPGLNSQMITDYIQYLGNLRCEN 300 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G P++ + E P W+S+ + + +FFE + T Y + + + D Sbjct: 301 LGFAPIYDGHKEEPQSMSWVSQYSNANLIKTDFFEAKSTAYAKSSAMVDD 350 >gi|258648774|ref|ZP_05736243.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella tannerae ATCC 51259] gi|260851104|gb|EEX70973.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella tannerae ATCC 51259] Length = 350 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 156/350 (44%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ KRM+N + ++N +KY W + Y A NN W+P E+ + DL Sbjct: 10 KPLFNEHGDTETAKKRMINGNTTNLNDFNNMKYKWVSDWYRQAMNNFWIPEEINLGQDLK 69 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + L ER + L F +S+ N+ + +++ E L Q F+EAV Sbjct: 70 DY---SKLLPAERTAYDKILSFLIFLDSIQTANL-PNVSEYITASEVNLCLNIQTFQEAV 125 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ E R+ K + L + D Sbjct: 126 HSQSYSYMLDTICSPEE------RDAILFQWKNDPILLNRNKFIGDLYNAFMNDRSTFQF 179 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V + EG++FY+GF +LGR KM G A++ +YI RDE+ HL ++ ++K Sbjct: 180 MKVLVANYILEGIYFYSGFMFFYNLGRNGKMPGSAQEIRYINRDENTHLWLFRSILLELK 239 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P ++T + R M+ + EI + + GL + Y++++ N R Sbjct: 240 KEAPEMFTPDKVDVYRQMIAQGVEEEIKWGEYVLGDKIEGLTSEMIRDYIKYLGNLRTTS 299 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G +PL+ Y + P W+S+ + + +FFE R T Y + + L D Sbjct: 300 LGFDPLYDGYDKEPPSMSWVSQYSNANMIKTDFFEARSTAYAKSSALIDD 349 >gi|307719930|ref|YP_003891070.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM 16294] gi|306978023|gb|ADN08058.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM 16294] Length = 340 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 99/347 (28%), Positives = 173/347 (49%), Gaps = 15/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + NV+D+++ + + +L +KY WA+ + NN W P EV M D+ Sbjct: 4 KQIYNPDSTENVNDRKVFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRDVN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K LTD E+ + L +SL NN++ + +++ PE L+RQ+FEEA+ Sbjct: 64 DYKQ---LTDAEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTAPEINLILVRQSFEEAL 120 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ S+ + E+++++R + K + Q L+ K+ Sbjct: 121 HSQSYAVMVDSISTNSEEIYDLWRRDMMLKHKNDTIAAVYQELA--------KNPTDSNF 172 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF I +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 173 VKACFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINTLR 232 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T E + M EA LE + +GL EQY+Q++A+ R + Sbjct: 233 KERPDLFTDELRADVIEMFKEAVKLETEWGKYITQGQILGLTDEIVEQYIQYLADDRLNS 292 Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352 +G + L+ + NP W+ + ++ NFFE VT Y +G+ L +D Sbjct: 293 VGFDKLYNVS-NPIKWVDDFAKFNDQKTNFFEGTVTNYSKGS-LSFD 337 >gi|224438210|ref|ZP_03659145.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter cinaedi CCUG 18818] gi|313144656|ref|ZP_07806849.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter cinaedi CCUG 18818] gi|313129687|gb|EFR47304.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter cinaedi CCUG 18818] Length = 348 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 172/347 (49%), Gaps = 13/347 (3%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N I E + +V D+++ + + L +KY WA+ + + N W P EV + Sbjct: 7 QNIERKKIYNPESKESVKDRKIFGGNPTSMFDLNKIKYQWAYNLWKTMLANTWFPEEVNL 66 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + GLT E+ R L +SL NN++ + ++++PE L+RQA Sbjct: 67 NGDKRDYAD--GLTAQEKAGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQA 124 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEEA+HS ++ ++ S+ + E++ M+R + +K + L K Sbjct: 125 FEEALHSQSYAVMVESISANTDEIYEMWRVDMQLRSKNDHIANVYIELG--------KQP 176 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 ++ L + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL + Sbjct: 177 TEQNLLKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLLVFQQM 236 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 IN ++ E PHL+T +++ M +A +E + +GL A +Y+Q++A+ Sbjct: 237 INALRKEQPHLFTPSLEEEVIAMFQKAVEIESVWGEYITQGQILGLTAEIIREYIQYLAD 296 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGA 347 R +GL ++ +++NP W+ + ++ NFFE +VT Y +G+ Sbjct: 297 MRLRAVGLREIY-HSKNPIKWVEQFASFNDQKTNFFEAKVTNYSKGS 342 >gi|21492474|ref|NP_659593.1| Ribonucleotide reductase, small subunit [Sheeppox virus] Length = 321 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 87/332 (26%), Positives = 145/332 (43%), Gaps = 28/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+ Y W Y A + W EV + DL+ WK L ++E+ Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLSDWK---KLNNEEQYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN + I K+ WA ++ + + + + EG Sbjct: 119 TKEKEYLFNAIETMDFIKKKSEWARKWI-------------SNKKASFGERLIAFAAVEG 165 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + +K Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKY-------PPSN 218 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + ++ EA +E + +P +G+N QY++FIA+R ++G + +F + N Sbjct: 219 EIITIIIKEAVSIEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVF-MSIN 277 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV+EYQ+ + Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308 >gi|302386033|ref|YP_003821855.1| ribonucleotide reductase [Clostridium saccharolyticum WM1] gi|302196661|gb|ADL04232.1| ribonucleotide reductase [Clostridium saccharolyticum WM1] Length = 368 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 163/349 (46%), Gaps = 15/349 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + V +RM+N + ++N +KY W + Y A NN W+P E+ + D Sbjct: 29 PLFHPDGETEVRKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLSRDRKD 88 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + L+ ER + L F +S+ N+ A+ +++ E L Q F+EAVH Sbjct: 89 Y---PLLSPQERRAYDKILSFLVFLDSIQTANL-PALGEYVTANEINLCLSIQTFQEAVH 144 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y++ ++ + R K++ L T + KD Sbjct: 145 SQSYSYMLDTICEPQT------RNDVLYQWKSDPRLLARNTFIGDLYNEFQKDKSPYAFM 198 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 V + EG++FY+GF +LGR +KM G +++ +YI RDE+ HL ++I +++ Sbjct: 199 KTVVANFILEGVYFYSGFMFFYNLGRNHKMTGSSQEIRYINRDENTHLWLFRNIILELEK 258 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P L+++E + RTM+ E EIA+ + GL Y+ ++ N RC + Sbjct: 259 EEPKLFSRERIEVYRTMIKEGCEQEIAWGCYAIGDEVPGLTKEMITDYIMYLGNLRCASL 318 Query: 308 GLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 G +++ + + P W+++ + + +FFE + T Y + + L D Sbjct: 319 GWGRIYEGHDKEPESMSWVNQFSNANLIKTDFFEAKSTAYAKSSALLDD 367 >gi|229495919|ref|ZP_04389645.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas endodontalis ATCC 35406] gi|229317232|gb|EEN83139.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas endodontalis ATCC 35406] Length = 346 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 86/350 (24%), Positives = 160/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + + +R++N + ++N +KY W Y +A NN W+P E+ + D+ Sbjct: 6 KALFNEHGDIELSKRRLINGNTTNLNDFNNIKYPWVSNWYRTAMNNFWIPEEINLSQDVK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L+ E+ + L F +S+ N+ + +++ E L QAF+EAV Sbjct: 66 DYR---ILSKAEKTAYDKILSFLIFLDSIQTANL-PNVGEYITANEVNLCLTIQAFQEAV 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ E R + + L + + L Sbjct: 122 HSQSYSYMLDTICSPEE------RTSILYQWRDDEHLLRRNKFIGDIYNDFQLHKTPDQL 175 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +++ Sbjct: 176 ARTMVANYILEGVYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILELR 235 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T E + + M+ E L EIA+ + GL + Y+ ++AN R Sbjct: 236 REQPELFTPEREAEFLEMIREGALQEIAWGKYVIGDEIEGLTSQMVSDYIMYLANLRSAN 295 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +GL +F + E P W+S+ + + +FFE + + Y + A ++ D Sbjct: 296 LGLGVIFPGHEEEPASMSWVSQYSNSNLIKTDFFEAKPSAYAKSASIEDD 345 >gi|148912897|ref|YP_001293211.1| hypothetical protein GTPV_gp017 [Goatpox virus Pellor] Length = 321 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 146/332 (43%), Gaps = 28/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+ Y W Y A + W EV + DLA WK L ++E+ Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLNNEEQYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAIENIHSEMYSLLIDTYISS 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN + I K+ WA ++ + + + + EG Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI-------------SNKKASFGERLIAFAAVEG 165 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + +K Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKY-------PPSN 218 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + +++EA +E + +P +G+N QY++FIA+R ++G + +F + N Sbjct: 219 DIIKIIINEAVSIEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVF-MSTN 277 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV+EYQ+ + Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308 >gi|332297025|ref|YP_004438947.1| ribonucleotide reductase [Treponema brennaborense DSM 12168] gi|332180128|gb|AEE15816.1| ribonucleotide reductase [Treponema brennaborense DSM 12168] Length = 346 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 84/349 (24%), Positives = 147/349 (42%), Gaps = 15/349 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ + +V + M+ + ++N +KY W + Y A NN W+P E+ + D Sbjct: 7 PLFNPDGDADVRLRSMVGGNTTNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLSQDTKD 66 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + L + ER + L F +S+ N+ + +++ E L Q F+E VH Sbjct: 67 Y---PHLDEAERTAYDKILSFLIFLDSIQTANL-PNVGEYITANEVNLCLSIQTFQECVH 122 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y++ ++ E R K + L T + + D Sbjct: 123 SQSYSYMLDTICSPEQ------RNEILYQWKTDERLLKRNTFIGGCYNDFQEHKDFFRFM 176 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K Sbjct: 177 KVLIANYILEGIYFYSGFMFFYNLARNGKMPGSAQEIRYINRDENTHLWLFKNIILELKK 236 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P ++T+E ML E EI + + GL Y+ ++ N R + Sbjct: 237 ERPDMFTEEKVASYAEMLKEGVRQEIEWGEYVIGDDIPGLTRKMVRDYITYLGNLRWTNL 296 Query: 308 GLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 PL+ W+S + + +FFE R T Y + L D Sbjct: 297 DFPPLYPGFDTEPEDMAWVSAYSNANMVKTDFFEARSTAYAKSTALVDD 345 >gi|257067181|ref|YP_003153437.1| ribonucleotide-diphosphate reductase subunit beta [Anaerococcus prevotii DSM 20548] gi|256799061|gb|ACV29716.1| Ribonucleoside-diphosphate reductase [Anaerococcus prevotii DSM 20548] Length = 352 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + +++ +R++ + ++N LKY W + Y A NN W+P E+ + D+ + Sbjct: 14 IFNEDGDIDLSKRRIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L E+ R L F +S+ N+ + +++ E L Q ++E++HS Sbjct: 74 R---KLDKHEKKAFDRILSFLTYLDSIQTANL-PNLQTYITANEINLCLSIQTYQESIHS 129 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ YI+ ++ E R K + L + ++ D+ Sbjct: 130 QSYSYILDTICSPEE------RTRILYLWKEDEHLLKRNEFIGDQYNEFLENDDEFRFMK 183 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + + EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL +IN +K E Sbjct: 184 VLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKE 243 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 L+ E Q R ML E EIA+ ++ GLN E Y++++ N R +G Sbjct: 244 REDLFVPELQNYYREMLKEGVEQEIAWGKYSIGNSIAGLNEKMIEDYIKYLGNLRAKGLG 303 Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 LEPL++ Y E P W+ E D + +FFE +VT Y + + ++ D Sbjct: 304 LEPLYEGYKEIPESMKWVDEYSDPNGVKTDFFEAKVTAYSKSSIIEDD 351 >gi|313900116|ref|ZP_07833616.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. HGF2] gi|312955168|gb|EFR36836.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. HGF2] Length = 347 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 87/354 (24%), Positives = 155/354 (43%), Gaps = 15/354 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + P+ V +RM+N + ++N +KY W + Y A NN W+P E+ + Sbjct: 3 DLVRKPLFNEHGDCEVGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLN 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ ++ L + E+ + L F +S+ N+ + +++ E L QAF Sbjct: 63 QDVKDYR---RLREAEKTAYDKTLSFLIFLDSIQTANL-PNVGEYITANEVNLCLTIQAF 118 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +EAVHS ++ Y++ S+ + R K + L + D Sbjct: 119 QEAVHSQSYSYMLDSICSPQE------RTDILYQWKDDERLLNRNKFIGDLYNDFQTHRD 172 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 L + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I Sbjct: 173 GRHLMKTMMANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMI 232 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 +++ E P L+T+E ++ + ML EI + + GL Y+ ++ N Sbjct: 233 LELQKEEPQLFTEELIEEYKDMLRHGVEEEIRWGEYVIGNHIEGLTMEMVSDYIHYLGNL 292 Query: 303 RCHQIGLEPLFKYTEN---PFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 R + +G L+ EN W+S + + +FFE R + Y + + L D Sbjct: 293 RSNSLGFGSLYDGFENEPKSMEWVSMYANANLIKTDFFEARSSAYAKSSALVDD 346 >gi|78776214|ref|YP_392529.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurimonas denitrificans DSM 1251] gi|78496754|gb|ABB43294.1| Ribonucleoside-diphosphate reductase [Sulfurimonas denitrificans DSM 1251] Length = 340 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 101/347 (29%), Positives = 178/347 (51%), Gaps = 15/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I E NV+D+R+ + + +L +KY WA+ + NN W P EV M D++ Sbjct: 4 KKIYNPESNENVNDRRIFGGNPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDVS 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K +TD E+ + L +SL NNI+ I ++++PE L+RQA+EEA+ Sbjct: 64 DYKQ---ITDVEKASYDKALAQLIFMDSLQTNNIMDNINPYVTSPEINLILVRQAYEEAL 120 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ ++ + E++ ++R + K + + + LS K+ + Sbjct: 121 HSQSYAVMVDTISTNSKEIYELWRRDMMLKGKNDAIARVYEELS--------KNPTEHNF 172 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GFA I +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 173 VKACFANQILEGIYFYSGFAYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINSLR 232 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+ ++ +++ M EA LE+A+ +GL EQY+Q++A+ R Sbjct: 233 KERPDLFNEKLKEEVIEMFKEAVALEVAWGKYITGGQILGLTDAIIEQYIQYLADDRLTS 292 Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352 +G L+ T NP W+ + ++ NFFE V Y +G+ L +D Sbjct: 293 VGFAKLYNVT-NPIKWVDDFSKFNDQKTNFFEGTVANYSKGS-LTFD 337 >gi|325261084|ref|ZP_08127822.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. D5] gi|324032538|gb|EGB93815.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp. D5] Length = 347 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 164/350 (46%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ E + V ++M+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPEGDIEVTKRKMIGGNTTNLNDFNHMKYNWVSDWYRQAMNNFWVPEEINLSVDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K L ER + L F +S+ N+ I +++ E L Q F+EAV Sbjct: 67 DYK---MLPAAERRAYDKILSFLIFLDSIQTANL-PNIGEYITANEVNLCLSIQTFQEAV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ + R K + L + ++ E L Sbjct: 123 HSQSYSYMLDTICEPQE------RNAVLYQWKEDRHLLERNEFIGNLYNAFQEEKSPEML 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +LGR +M G ++ +YI RDE+ HL ++ ++K Sbjct: 177 ACTLIANYILEGIYFYSGFMFFYNLGRNRRMPGSVQEIRYINRDENTHLWLFRSILMELK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T E +K R+M+ E EI + H + GLN Y+Q++ N RC Sbjct: 237 KEEPWLFTAEKTEKYRSMIREGCEQEIRWGHYVIGDDIQGLNREMITDYIQYLGNLRCRG 296 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 + LEP+++ + + P W+S+ + + +FFE R T Y + + L D Sbjct: 297 LELEPVYEGHEKEPESMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346 >gi|22595713|gb|AAN02745.1| ribonucleotide reductase small subunit [lumpy skin disease virus] Length = 321 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 145/332 (43%), Gaps = 28/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+ Y W Y A + W EV + DLA WK L ++E+ Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLNNEEQYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN + I K+ WA ++ + + + + EG Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI-------------SNKKASFGERLIAFAAVEG 165 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + +K Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKY-------PPSN 218 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 +++EA +E + +P +G+N QY++FIA+R ++G + +F + N Sbjct: 219 DIITIIINEAVSIEKEFLTNIIPVKLIGMNCVLMSQYIEFIADRLLLELGCDKVF-MSTN 277 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV+EYQ+ + Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308 >gi|254456975|ref|ZP_05070403.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacterales bacterium GD 1] gi|207085767|gb|EDZ63051.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacterales bacterium GD 1] Length = 340 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 98/347 (28%), Positives = 180/347 (51%), Gaps = 15/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + + NV+D+++ + + +L +KY WA+ + NN W P EV M D+ Sbjct: 4 KNIYNPDSKENVNDRKVFGGDPTGIFELNNIKYQWAYNLWEVMLNNTWFPKEVDMTRDVN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K+ LT++E+ + L +SL NN++ + ++++PE L+RQ+FEEA+ Sbjct: 64 DYKN---LTENEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTSPEINLILVRQSFEEAL 120 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ S+ + E+++++R + K + + Q L++ + + Sbjct: 121 HSQSYAVMVDSISTNSAEIYDLWRRDMMLKGKNDAIARVYQELAA--------NPTEHNF 172 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF I +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 173 VKACFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINTLR 232 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + +++ M EA LE + +GL EQY++F+A+ R Sbjct: 233 KERPDLFTDKLKEEVIAMFKEAVQLESEWGKYITQGQILGLTNDIVEQYIKFLADERLTA 292 Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352 +G E L+ T NP W+ + ++ NFFE VT Y +G+ L +D Sbjct: 293 VGFEKLYNVT-NPIKWVDDFAKFNDQKTNFFEGTVTNYSKGS-LTFD 337 >gi|150015087|ref|YP_001307341.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium beijerinckii NCIMB 8052] gi|149901552|gb|ABR32385.1| Ribonucleoside-diphosphate reductase [Clostridium beijerinckii NCIMB 8052] Length = 344 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 94/352 (26%), Positives = 167/352 (47%), Gaps = 13/352 (3%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 P+ + KR++N + ++N +KY W + Y NN W+P EV + Sbjct: 2 TINKKPLFNELGDREISKKRIINGNTTNLNDFNNMKYSWVSDWYRQGMNNFWIPEEVNLS 61 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DL +++ L ++ER+ + L F +S+ N+ I +++ E L Q+F Sbjct: 62 QDLKDYQN---LLEEERIAYDKILSFLIFLDSIQTANL-SNINNYITASEINLCLTIQSF 117 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +EAVHS ++ Y++ S+ E R K + L + ++ Sbjct: 118 QEAVHSQSYSYMLDSICSPEK------RNEILYQWKDDDILLKRNKFIGDLYNEFIENPT 171 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 + L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I Sbjct: 172 EYNLLRTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNII 231 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 +++ ENP L+T+E + + R M+ EI + H + G+N E Y++++ N+ Sbjct: 232 KELQNENPELFTEEVKNELRNMMKIGVEQEILWGHYVIGDKIQGINKQLIENYIKYLGNK 291 Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 R +I L PLF + +NP W+ + + + +FFE R T Y + L D Sbjct: 292 RLKEINLSPLFKEQDKNPASWVDTLSNANSVKTDFFEARSTAYAKVTTLIDD 343 >gi|225873704|ref|YP_002755163.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium capsulatum ATCC 51196] gi|225791613|gb|ACO31703.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium capsulatum ATCC 51196] Length = 340 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 100/320 (31%), Positives = 173/320 (54%), Gaps = 8/320 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++ + N W EV Q DL K + L+ E +I+R + FFA+ + Sbjct: 19 LRPMRYPVFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LSPAEVHLIQRLVAFFATGD 76 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM---YR 150 S+V+NN+VL +Y+H+++PE R YL RQ +EEAVH + ++ + D Sbjct: 77 SIVSNNLVLNLYKHINSPEARLYLSRQLYEEAVHVQFYLTLLDNYVPDPEARAAAFAAVE 136 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI+ KA++ +++ ++ T++ ++FL +L F EG++F+ FA + Sbjct: 137 NIPSISKKADFCMKWMDSIQQLD-ELKTREHRRQFLLNLICFAACIEGLFFFAAFAYVYF 195 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES HL F +V+N ++ + P LW + + MLHEA Sbjct: 196 LRSKGLLHGLASGTNWVFRDESCHLEFAFEVVNVVRSQEPDLWDAQLEADIVEMLHEAVD 255 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E +A + + G GL+ QY+ ++A+ R ++G+ P F +NPF +M E+ D++ Sbjct: 256 AETQFAEDLLSGGVAGLSVRDMRQYLGYVADSRLQRLGIAPAFGV-KNPFSFM-ELQDVQ 313 Query: 331 KEKNFFETRVTEYQQGAELK 350 + NFFE RV+ YQ + Sbjct: 314 ELTNFFERRVSAYQTAVAGE 333 >gi|145596896|ref|YP_001161193.1| ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440] gi|145306233|gb|ABP56815.1| Ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440] Length = 350 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 102/324 (31%), Positives = 181/324 (55%), Gaps = 11/324 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++++ A N W EV + DL L+ ER ++ R + FFA+ + Sbjct: 30 LRPMRYPHFFDRFKEAIKNTWTVEEVDLHSDLGD---LAKLSSAERHLVSRLVAFFATGD 86 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY---R 150 ++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + +E E F + Sbjct: 87 TIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPEEKERFAAFAAVE 146 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ T+ + FL +L F EG++FY FA + Sbjct: 147 NIPSIARKAEFCFRWIDSIF-ELRELRTQADRRAFLLNLICFAACIEGLFFYGAFAYVYF 205 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F DV++ ++ E P L+ + +++ + M+ EA Sbjct: 206 LRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDADLERQVKEMVAEAVD 265 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +A + + +G GL+ +Y+Q +A+RR +G+ P++ + NPF +M E+ D++ Sbjct: 266 CEVQFAEDLLEQGVSGLSLADMREYLQHVADRRLVTLGIAPMYG-SANPFAFM-ELQDVQ 323 Query: 331 KEKNFFETRVTEYQQG--AELKWD 352 + NFFE RV+ YQ G + +D Sbjct: 324 ELSNFFERRVSAYQMGVSGSVTFD 347 >gi|331083185|ref|ZP_08332301.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 6_1_63FAA] gi|330404574|gb|EGG84114.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae bacterium 6_1_63FAA] Length = 347 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ +V +RM+ + ++N ++YGW + Y A NN W+P E+ + D Sbjct: 7 KPLFNPSGDTDVRFRRMIGGNTTNLNDFNNMRYGWVKDWYRQAMNNFWIPEEINLSQDRK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +S+ + N+ I +++ E L Q F+E V Sbjct: 67 DY---GELLGKERQAYDKILSFLVFLDSIQSANLPC-IGEYITANEINLCLSIQTFQECV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ E R K + L T + D L Sbjct: 123 HSQSYSYMLDTICSPEK------RNEILYQWKTDERLLKRNTFIGELYNEFQMKKDSFTL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I Q+K Sbjct: 177 LKVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILQLK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+TKE Q + ML E EIA+ H + G++ +Y++++ N R Sbjct: 237 EEEPELFTKENIQALKEMLMEGVEQEIAWGHYVLGDDIPGISKEMITEYIKYLGNLRFTG 296 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G + ++ Y + P W+S + + +FFE + T Y + L D Sbjct: 297 LGFDVVYPGYEKEPESMKWVSYYSNANMVKTDFFEAKSTAYAKSTALLDD 346 >gi|227485717|ref|ZP_03916033.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus ATCC 51172] gi|227236272|gb|EEI86287.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus ATCC 51172] Length = 352 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I +++ ++++ + ++N LKY W + Y A NN W+P E+ + D+ + Sbjct: 14 IFNENGDIDLAKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L E+ R L F +S+ N+ + +++ E L Q ++E++HS Sbjct: 74 R---KLDQHEKRAFDRILSFLTYLDSIQTANL-PNLQTYVTANEINLCLSIQTYQESIHS 129 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ YI+ ++ E R K + L + D ++ Sbjct: 130 QSYSYILDTICSPEE------RTRILYLWKEDDHLLRRNEFIGEQYNEFLVDDNEFKFVR 183 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL +IN +K E Sbjct: 184 ALIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKE 243 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+T E R ML E EI + + GL+ E Y++++ N R +G Sbjct: 244 RPDLFTPEATIVYRDMLKEGVRQEIEWGKYAIGDNIAGLSTTMIEDYIKYLGNLRAKGLG 303 Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +PLF+ YTE P W+ E D + + +FFE +VT Y + + ++ D Sbjct: 304 FDPLFEGYTEIPQSMKWVDEYSDPNRVKTDFFEAKVTAYSKSSIIEDD 351 >gi|53713986|ref|YP_099978.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis YCH46] gi|52216851|dbj|BAD49444.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides fragilis YCH46] Length = 349 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 157/350 (44%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + E ++M+ + ++N ++Y W + Y NN W+P E+ + D Sbjct: 9 NALFNPEGDTETRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQGMNNFWIPEEINLTQDTK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + LT ER + L F +SL +NN+ + +++ E L QAF+E V Sbjct: 69 DY---PHLTPAERTAYDKILSFLVFLDSLQSNNL-PTLSEYITANEVNLCLHIQAFQECV 124 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ E R K + L T + ++ D L Sbjct: 125 HSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFAL 178 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K Sbjct: 179 MKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELK 238 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + + M+ E EIA+ + GLN Y+ F+ N R Sbjct: 239 KEEPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFLGNLRWSS 298 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G PL++ + P W+S+ + + +FFE + T Y + L+ D Sbjct: 299 LGYTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|313903043|ref|ZP_07836438.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus DSM 13965] gi|313466767|gb|EFR62286.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus DSM 13965] Length = 336 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 118/328 (35%), Positives = 188/328 (57%), Gaps = 4/328 (1%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ + + QL PL+Y WA+ N W P E+P+ DD+ W+ LTDDER Sbjct: 10 DRLLGGDPLEPIQLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWE--LRLTDDERR 67 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 ++ LGFF ESLV +N+V++IY L+ PE R YL RQ +EEA H+ F+Y++ +L + Sbjct: 68 AVELLLGFFNPMESLVTHNLVMSIYPLLTPPEIRLYLARQIWEEANHTMAFEYVLKTLPV 127 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 D +F +R VP+I AK + + T+ L T + Q FL++L +Y+V EG++ Sbjct: 128 DRERVFAAHRNVPAIRAKEAFQQELTRQLLVRP-DVSTLEGRQAFLRNLIGYYIVLEGVF 186 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY GF + R N + G+A ++++DESLHL+FGI +I + E+P L T F ++ Sbjct: 187 FYGGFLFAYTFRRRNLLKGLATLVDWVLKDESLHLSFGIHLITALLEEHPELMTPAFARE 246 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + ++ A LE Y +P+ +G++A Y++++ +RR ++GL P F T NP Sbjct: 247 VKGLILRAVELERDYNRALLPRPILGVSADYLNAYVEYVTDRRLDELGLGPHFG-TPNPA 305 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAE 348 WM+ +D+ + NFFE R Y+ A+ Sbjct: 306 KWMATEVDVPEIVNFFEARNIHYEVAAD 333 >gi|257792030|ref|YP_003182636.1| ribonucleotide-diphosphate reductase subunit beta [Eggerthella lenta DSM 2243] gi|317488666|ref|ZP_07947206.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA] gi|257475927|gb|ACV56247.1| Ribonucleoside-diphosphate reductase [Eggerthella lenta DSM 2243] gi|316912225|gb|EFV33794.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA] Length = 347 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 96/350 (27%), Positives = 163/350 (46%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ +V D+RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPLGDTDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L ER + L F +SL + N+ A+ +++ E L Q F+E V Sbjct: 67 DYR---KLPAAERRAYDKILSFLIFLDSLQSANL-PAVGEYITANEVNLCLAIQTFQETV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ + R K + L + D E L Sbjct: 123 HSQSYSYMLDTICEPQE------RNDVLYQWKEDEHLLARNEFIGNLYNQFQDDKSPEAL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V + EG++FY+GF +LGR N M G ++ +YI RDE+ HL +++ ++K Sbjct: 177 ARVLVANYILEGVYFYSGFMFFYNLGRNNLMPGSVQEIRYINRDENTHLWLFRNILLELK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+ E ++ R M+ E EI + H + GLN Y+Q++ N RC Q Sbjct: 237 EEEPELFAPELVEEYRAMIKEGCEQEIRWGHYAIGDDVAGLNKQMVTDYIQYLGNLRCAQ 296 Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G EPL++ E W+S+ + + +FFE R T Y + + L D Sbjct: 297 LGFEPLYEGHEREPESMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346 >gi|283768723|ref|ZP_06341634.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia extructa W1219] gi|283104509|gb|EFC05882.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia extructa W1219] Length = 348 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 95/357 (26%), Positives = 168/357 (47%), Gaps = 15/357 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M+ P+ E ++V +R+LN +++N +KY W Y A NN W+P E+ Sbjct: 1 MSKGIQRKPLFNPEGDIDVCHRRLLNFDTTNINDFNNMKYTWVSNWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D + + L+ ER + L F +SL + N+ I +++ E L Sbjct: 61 NLNQDKSDY---LNLSLAERSAYDKILSFLVYLDSLQSANL-PNIASYVTANEVNLCLSI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 Q F+E +HS ++ Y++ S+ E R K + L T + + Sbjct: 117 QTFQECIHSQSYSYMLDSICSPEQ------RNEILYQWKYDEHLLKRNTFIGHLYNEFLE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D++ + + + EG++FY+GF +L R KM G ++ +YI RDE+ HL Sbjct: 171 YQDKQSFLKVCIANFILEGIYFYSGFMFFYNLARHGKMPGSVQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +++ +++ E P L+T Q + M+HE EIA+ + GLN+ E Y++++ Sbjct: 231 NILLELQKEEPELFTDSNIQMIKDMIHEGVQQEIAWGQYVIGNNIPGLNSQMVEDYIKYL 290 Query: 300 ANRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 N R +GL L++ Y E P W+ + D + +FFE RVT Y + + ++ D Sbjct: 291 GNTRFATLGLGNLYEGYEEEPETMRWVKQYSDANMVKTDFFEARVTAYAKSSAIEDD 347 >gi|317122809|ref|YP_004102812.1| ribonucleoside-diphosphate reductase [Thermaerobacter marianensis DSM 12885] gi|315592789|gb|ADU52085.1| Ribonucleoside-diphosphate reductase [Thermaerobacter marianensis DSM 12885] Length = 336 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 119/328 (36%), Positives = 190/328 (57%), Gaps = 4/328 (1%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ + + QL PL+Y WA+ N W P E+P+ DD+ W+ LTDDER Sbjct: 10 DRLLGGDPLEPIQLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWE--LRLTDDERR 67 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 ++ LGFF ESLV +N+V++IY L+ PE R YL RQ +EEA H+ F+Y++ +L + Sbjct: 68 AVELLLGFFNPMESLVTHNLVMSIYPLLTPPEVRLYLARQIWEEANHTMAFEYVLKTLPV 127 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 D +F +R+VP+I AK + + T+ L T + Q FL++L +Y+V EG++ Sbjct: 128 DRERVFAAHRDVPAIRAKEAFQQELTRQLLVRP-DVSTLEGRQAFLRNLIGYYIVLEGVF 186 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY GF + R N + G+A ++++DESLHL+FGI +I + E+P L T EF ++ Sbjct: 187 FYGGFLFAYTFRRRNLLKGLATLVDWVLKDESLHLSFGIHLITTLLEEHPELMTPEFARE 246 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + ++ A LE Y +P+ +G++A Y++++ +RR ++GL P F T NP Sbjct: 247 VKGLILRAVELERDYNRALLPRPILGVSADYLNAYIEYVTDRRLDELGLGPHFG-TPNPA 305 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAE 348 WM+ +D+ + NFFE R Y+ A+ Sbjct: 306 QWMATEVDVPEIVNFFEARNIHYEVAAD 333 >gi|73852496|ref|YP_293780.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi virus 86] gi|72415212|emb|CAI65449.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi virus 86] Length = 325 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 153/332 (46%), Gaps = 28/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D L P+ + +E+Y A + W +E+ + D W LT++E+ Sbjct: 3 EPLLIENKDRFVLFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDW---PKLTENEQHF 59 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+++ +V N+V + PE R + Q E VH+ T+ ++ SL D Sbjct: 60 IKYILAFFATADGIVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVED 119 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E F R + SI KA+WAL++ ++ + + + V EG Sbjct: 120 KDEQRNLFRAIRTIQSIKNKADWALKWMN--------------NERSFAERLIAFAVVEG 165 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE LH +F + H+ K Sbjct: 166 IFFSGAFCAIFWLKKRAIMPGLTFSNELISRDEGLHTDFACMLYRN------HIIHKLPY 219 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + ++ A LE + E +P +G+NA S Y++F+A+R +G + N Sbjct: 220 ETVLDIITNAVELERLFICEALPVSLIGINAESMSTYIKFVADRLLISLGYAKHYNVV-N 278 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF WM E+I L+ + NFFE RV EYQ+ + Sbjct: 279 PFEWM-ELISLEGKTNFFEKRVGEYQKAGVMD 309 >gi|253567022|ref|ZP_04844473.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_2_5] gi|265764336|ref|ZP_06092904.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 2_1_16] gi|15290503|gb|AAK92210.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides fragilis 638R] gi|251944146|gb|EES84655.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_2_5] gi|263256944|gb|EEZ28290.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 2_1_16] gi|301163665|emb|CBW23219.1| putative ribonucleoside-diphosphate reductase beta chain [Bacteroides fragilis 638R] Length = 349 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 158/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + E ++M+ + ++N ++Y W + Y A NN W+P E+ + D Sbjct: 9 NALFNPEGDTETRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + LT ER + L F +SL +NN+ + +++ E L QAF+E V Sbjct: 69 DY---PHLTPAERTAYDKILSFLVFLDSLQSNNL-PTLSEYITANEVNLCLHIQAFQECV 124 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ E R K + L T + ++ D L Sbjct: 125 HSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFAL 178 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K Sbjct: 179 MKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELK 238 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + + M+ E EIA+ + GLN Y+ F+ N R Sbjct: 239 KEEPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFLGNLRWSS 298 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G PL++ + P W+S+ + + +FFE + T Y + L+ D Sbjct: 299 LGYTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|242309209|ref|ZP_04808364.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pullorum MIT 98-5489] gi|239524250|gb|EEQ64116.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pullorum MIT 98-5489] Length = 341 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 176/342 (51%), Gaps = 13/342 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + +L +KY WA+ + N W P EV M D Sbjct: 5 KKIYNPNSNESVNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDKR 64 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + GLT +E++ R L +SL NN++ + ++++PE L+RQAFEEA+ Sbjct: 65 DYAD--GLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ S+ + E++ M+R + +K ++ + + L++ + + + Sbjct: 123 HSQSYAVMVESISANTDEIYEMWRTDMQLRSKNDYIAEVYEQLAT--------NPTERNI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF +L R+ KM+G A+ ++I RDE HL ++IN K Sbjct: 175 IKAMFANQILEGIYFYSGFTFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMINSTK 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E+P +TK+ +++ M EA +EIA+ +GL A ++Y++++A+ R + Sbjct: 235 KESPEFFTKDLEEEVLEMFREAVKVEIAWGEYITQGQILGLTAEIIQEYIKYLADDRLRR 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGA 347 +GL L+ ++P W+ + + NFFE VT Y +G+ Sbjct: 295 VGLPVLYN-AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS 335 >gi|325831705|ref|ZP_08164922.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp. HGA1] gi|325486576|gb|EGC89025.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp. HGA1] Length = 347 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 97/350 (27%), Positives = 164/350 (46%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ +V D+RM+ + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNPLGDTDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L ER + L F +SL + N+ A+ +++ E L Q F+E V Sbjct: 67 DYR---KLPASERRAYDKILSFLIFLDSLQSANL-PAVGEYITANEVNLCLAIQTFQETV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ + R K + L + D E L Sbjct: 123 HSQSYSYMLDTICEPQE------RNDVLYQWKEDEHLLARNEFIGNLYNQFQDDKSPEAL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V + EG++FY+GF +LGR N M G ++ +YI RDE+ HL +++ ++K Sbjct: 177 ARVLVANYILEGVYFYSGFMFFYNLGRNNLMPGSVQEIRYINRDENTHLWLFRNILLELK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T E ++ R M+ E EI + H + GLN Y+Q++ N RC Q Sbjct: 237 EEEPELFTPELVEEYRAMIKEGCEQEIRWGHYAIGDEVAGLNKQMVTDYIQYLGNLRCTQ 296 Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G EPL++ E W+S+ + + +FFE R T Y + + L D Sbjct: 297 LGFEPLYEGHEREPESMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346 >gi|313683656|ref|YP_004061394.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994] gi|313156516|gb|ADR35194.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994] Length = 339 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 96/347 (27%), Positives = 176/347 (50%), Gaps = 15/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+D+++ + + +L +KY WA+ + NN W P EV M D Sbjct: 4 KQIYNPTSTEHVNDRQIFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRDAV 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K LT+ E+ + L +SL NN++ + +++ PE L+RQ+FEEA+ Sbjct: 64 DYKY---LTEMEKTAYDKALSQLIFMDSLQTNNLMDNVNPYVTAPEINLILVRQSFEEAL 120 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ S+ + E+++++R+ + K + L++ D + Sbjct: 121 HSQSYAVMVDSISQNSEEIYDLWRKDMMLKTKNDSIAARYDELAN--------DPSESAF 172 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF I +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 173 VKACFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNIINTLR 232 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T+E ++ M +A LE A+ +GL EQY+Q++A++R Sbjct: 233 RERSDLFTEELIEEVYDMFRKAVELETAWGKYITQGQILGLTNEIVEQYIQYLADQRLTA 292 Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352 +GL+PL+ + +P W+ + ++ NFFE VT Y +G+ L +D Sbjct: 293 VGLKPLYNVS-HPIKWVDDFSKFNDQKTNFFEGTVTNYSKGS-LSFD 337 >gi|60682187|ref|YP_212331.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis NCTC 9343] gi|60493621|emb|CAH08410.1| putative ribonucleoside-diphosphate reductase beta chain [Bacteroides fragilis NCTC 9343] Length = 349 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 158/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + E ++M+ + ++N ++Y W + Y A NN W+P E+ + D Sbjct: 9 NALFNPEGDTETRFRKMIGGNTTNLNDFNNMRYQWVSDWYRQAMNNFWIPEEINLTQDTK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + LT ER + L F +SL +NN+ + +++ E L QAF+E V Sbjct: 69 DY---PHLTPAERTAYDKILSFLVFLDSLQSNNL-PTLSEYITANEVNLCLHIQAFQECV 124 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ E R K + L T + ++ D L Sbjct: 125 HSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFAL 178 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K Sbjct: 179 MKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELK 238 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + + M+ E EIA+ + GLN Y+ F+ N R Sbjct: 239 KEEPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFLGNLRWSS 298 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G PL++ + P W+S+ + + +FFE + T Y + L+ D Sbjct: 299 LGYTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|325478871|gb|EGC81981.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 352 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 168/348 (48%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + +++ ++++ + ++N LKY W + Y A NN W+P E+ + D+ + Sbjct: 14 IFNEDGDIDLAKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L + E+ R L F +S+ N+ + +++ E L Q ++E++HS Sbjct: 74 RN---LDEHEKRAFDRILSFLTYLDSIQTANL-PNLQTYITANEINLCLSIQTYQESIHS 129 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ YI+ ++ E R K + L + K+ D+ Sbjct: 130 QSYSYILDTICSPEE------RTRILYLWKEDEHLLKRNEFIGEQYNEFLKNDDEFRFMK 183 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL +IN ++ E Sbjct: 184 ALVANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLRKE 243 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 L+TKE ++ R ML E EIA+ + GL+ E Y++++ N R +G Sbjct: 244 REDLFTKEHKEYYRNMLKEGVEQEIAWGKYAIGDNIAGLSEKMIEDYIKYLGNLRAKGLG 303 Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 LE L++ YTE P W+ E D + +FFE +VT Y + + ++ D Sbjct: 304 LEALYEGYTEIPDSMKWVDEYSDPNAVKTDFFEAKVTAYSKSSIIEDD 351 >gi|323343338|ref|ZP_08083565.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella oralis ATCC 33269] gi|323095157|gb|EFZ37731.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella oralis ATCC 33269] Length = 349 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 93/356 (26%), Positives = 159/356 (44%), Gaps = 17/356 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N + + E ++ +RM+ + ++N ++Y WA + Y A NN W+P E+ + Sbjct: 4 NELKRNALFNPEGDTDLRLRRMIGGNTTNLNDFNNMRYPWASDWYRQAMNNFWIPEEINL 63 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + L ER + L F +SL +NN+ I +++ E L QA Sbjct: 64 AQDTKDY---PRLDKAERAAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQA 119 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 F+E VHS ++ Y++ ++ E R K + L T + Sbjct: 120 FQECVHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFHDKR 173 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 D+ L V + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++ Sbjct: 174 DKFSLMKTCVANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNI 233 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 + ++K E P ++T E + M+ E EIA+ + GLN Y+ ++ N Sbjct: 234 LQELKKEEPKMFTPEKVKVYEEMMREGVRQEIAWGQYVIGDEVPGLNTKMVSDYIHYLGN 293 Query: 302 RRCHQIGLEPLFKYT----ENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 R H +G L+ EN W+S+ + + +FFE + T Y + L+ D Sbjct: 294 LRWHSLGFGYLYDENIQEPEN-MKWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|152989800|ref|YP_001355522.1| ribonucleotide-diphosphate reductase subunit beta [Nitratiruptor sp. SB155-2] gi|151421661|dbj|BAF69165.1| ribonucleoside-diphosphate reductase, beta subunit [Nitratiruptor sp. SB155-2] Length = 341 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 100/347 (28%), Positives = 177/347 (51%), Gaps = 15/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I E +V+++++ + + +L +KY WA+ + N W P EV M D Sbjct: 6 KKIYNPESHESVNERKVFGGDPTGIFELNKIKYQWAYNLWEMMLANTWFPKEVDMTQDAR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K LTD E+L + L +SL NN++ + +++ PE L+RQAFEEA+ Sbjct: 66 DYK---LLTDAEKLAYDKVLAQLIFMDSLQTNNLIDNVNPYITAPEINLILVRQAFEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ S+ + E++ ++RE + K ++ + L++ + E + Sbjct: 123 HSQSYAVMVDSISQNTDEIYELWREDLQLKQKNDYIAHVYEELAA--------NPSDENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF + +L R+ KM+G A+ ++I RDE HL ++IN +K Sbjct: 175 VKAMFANQILEGIYFYSGFTYMYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINTVK 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+TKE M A LE ++ +GL EQY++++A+ R + Sbjct: 235 KERPELFTKELIDDVYKMFEGAVDLETSWGKYITQGQILGLTDEIIEQYIKYLADDRLKR 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352 +GLEP++ E+P W+ + ++ NFFE VT Y +G+ L +D Sbjct: 295 VGLEPMYNV-EHPIKWVDDFSKFNDQKTNFFEGNVTNYSKGS-LDFD 339 >gi|42525851|ref|NP_970949.1| ribonucleotide-diphosphate reductase subunit beta [Treponema denticola ATCC 35405] gi|41815901|gb|AAS10830.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema denticola ATCC 35405] Length = 351 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 160/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + ++M+ + ++N +KY WA + Y A NN W+P E+ M D+ Sbjct: 11 KALFNENGDIETHKRKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQ 70 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L+ E+ + L F +S+ N+ + ++++ E L QAF+EAV Sbjct: 71 DYR---KLSIPEKTAYDKILSFLIFLDSIQTANL-PNVGQYVTANEVNLCLTIQAFQEAV 126 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ E R K + L + D Sbjct: 127 HSQSYSYMLDTICSPEE------RTEILYQWKDDEHLLRRNKFIGDLYNEFQSDKSALAF 180 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V + EG++FY+GF +LGR NKM G ++ +YI RDE+ HL +I +++ Sbjct: 181 LKVCVANYILEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSMIQELQ 240 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + + R M+ E EIA+ + GLN+ Y+Q++ N RC Sbjct: 241 KEEPQLFTPQNVELFRAMIKEGCEQEIAWGDYVIGNDIPGLNSQMITDYIQYLGNLRCEN 300 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G P++ + E P W S+ + + +FFE + T Y + + + D Sbjct: 301 LGFAPIYDGHREEPQSMSWASQYSNANLIKTDFFEAKSTAYAKSSAMVDD 350 >gi|13876672|gb|AAK43560.1| ribonucleoside reductase [lumpy skin disease virus] Length = 321 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 145/332 (43%), Gaps = 28/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+ Y W Y A + W EV + DLA WK L ++E+ Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLNNEEQYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN + I K+ WA ++ + + + + EG Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI-------------SNKKASFGERLIAFAAVEG 165 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + +K Sbjct: 166 IFFCGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKY-------PPSN 218 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 +++EA +E + +P +G+N QY++FIA+R ++G + +F + N Sbjct: 219 DIITIIINEAVSIEKEFLTNIIPVKLIGMNCVLMSQYIEFIADRLLLELGCDKVF-MSTN 277 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV+EYQ+ + Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308 >gi|260589755|ref|ZP_05855668.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia hansenii DSM 20583] gi|260539995|gb|EEX20564.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia hansenii DSM 20583] Length = 359 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 158/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ +V +RM+ + ++N ++YGW Y A NN W+P E+ + D Sbjct: 19 KPLFNPSGDTDVRFRRMIGGNTTNLNDFNNMRYGWVKGWYRQAMNNFWIPEEINLSQDRK 78 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +S+ + N+ I +++ E L Q F+E V Sbjct: 79 DY---GELLGKERQAYDKILSFLVFLDSIQSANLPC-IGEYITANEINLCLSIQTFQECV 134 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ E R K + L T + D L Sbjct: 135 HSQSYSYMLDTICSPEK------RNEILYQWKTDERLLKRNTFIGELYNEFQMKKDSFTL 188 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I Q+K Sbjct: 189 LKVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILQLK 248 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+TKE Q + ML E EIA+ H + G++ +Y++++ N R Sbjct: 249 EEEPELFTKENIQALKEMLMEGVEQEIAWGHYVLGDDIPGISKEMITEYIKYLGNLRFTG 308 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G + ++ Y + P W+S + + +FFE + T Y + L D Sbjct: 309 LGFDVVYPGYEKEPESMKWVSYYSNANMVKTDFFEAKSTAYAKSTALLDD 358 >gi|309775830|ref|ZP_07670824.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308916368|gb|EFP62114.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 347 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 88/354 (24%), Positives = 157/354 (44%), Gaps = 15/354 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + P+ V +RM+N + ++N +KY W + Y A NN W+P E+ + Sbjct: 3 DLLRKPLFNEHGDCEVGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLN 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D+ ++ L + E+ + L F +S+ N+ + +++ E L QAF Sbjct: 63 QDVKDYR---RLHEAEKTAYDKTLSFLIFLDSIQTANL-PNVGEYVTANEVNLCLTIQAF 118 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +EAVHS ++ Y++ S+ + R K + L + + D Sbjct: 119 QEAVHSQSYSYMLDSICSPQE------RNDILYQWKDDERLLNRNKFIGDLYNDFQEHKD 172 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 L + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I Sbjct: 173 GLHLMKTMMANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMI 232 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 +++ E PHL+T+E Q+ + ML EI + + GL Y+ ++ N Sbjct: 233 LELQKEEPHLFTEELIQEYKDMLRHGVEEEIRWGEYVIGNNIEGLTMEMVSDYIHYLGNL 292 Query: 303 RCHQIGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 R + +G L++ E W+S + + +FFE R + Y + + L D Sbjct: 293 RSNSLGFGSLYEGFESEPKSMEWVSMYANANLIKTDFFEARSSAYAKSSALVDD 346 >gi|307565004|ref|ZP_07627521.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella amnii CRIS 21A-A] gi|307346317|gb|EFN91637.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella amnii CRIS 21A-A] Length = 347 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 157/350 (44%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + + ++ +RM+ +++N ++Y W + Y A NN W+P E+ + D+ Sbjct: 7 NALFNPQGDTDLRLRRMIGGNSTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINLAQDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +SL +NN+ I +++ E L Q F+E V Sbjct: 67 DY---PNLPAAERKAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQTFQECV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ E R K + L T + + D+ L Sbjct: 123 HSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQANRDKFCL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K Sbjct: 177 MKACVANFILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIIVELK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T E M+ E EIA+ + GL Y++++ N R Sbjct: 237 QEEPDLFTPEKVAVYEEMMREGVRQEIAWGQYVIGNDVQGLTQQMVYDYIRYLGNLRWKS 296 Query: 307 IGLEPLFKYTE-NPFP--WMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G + LF+ + P W+++ + + +FFE + T Y + L D Sbjct: 297 LGFDYLFEDNQAEPADMQWVAQYSNANMVKTDFFEAKSTAYAKSTALIDD 346 >gi|224539244|ref|ZP_03679783.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus DSM 14838] gi|224519126|gb|EEF88231.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus DSM 14838] Length = 349 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 88/356 (24%), Positives = 156/356 (43%), Gaps = 15/356 (4%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A + + + ++M+ + ++N ++Y W + Y A NN W+P E+ Sbjct: 3 AKKLKRNALFNPSGDTEIRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEIN 62 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D + L + ER + L F +SL +NN+ I +++ E L Q Sbjct: 63 LTQDTKDY---PLLDEAERTAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQ 118 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AF+E VHS ++ Y++ ++ E R K + L T + + Sbjct: 119 AFQECVHSQSYSYMLDTICSPEK------RNDILYQWKTDEHLLKRNTFIGNCYNEFQES 172 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 D L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 173 QDGFTLMKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRS 232 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I ++K E P L+T + Q M+ E EI + + GLN Y+ ++ Sbjct: 233 IILELKKEEPELFTPDKVQIYENMMREGVKQEIEWGQYVIGDNIQGLNRQMIADYIHYLG 292 Query: 301 NRRCHQIGLEPLFKY-TENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 N R +G PL+++ + P W+ + + + +FFE + T Y + L+ D Sbjct: 293 NLRWSSLGNPPLYEHNRKEPESMHWVLQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|333030473|ref|ZP_08458534.1| ribonucleotide reductase [Bacteroides coprosuis DSM 18011] gi|332741070|gb|EGJ71552.1| ribonucleotide reductase [Bacteroides coprosuis DSM 18011] Length = 347 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 163/350 (46%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + ++V+ +RM+N + ++N +KYGW Y A NN W+P E+ M D+ Sbjct: 7 KALFNEHGDIDVNKRRMINGNTTNMNDFNNMKYGWVSNWYRQAMNNFWIPEEINMSQDVK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ L+ E+ R L F +S+ N+ + +++ E L QAF+EAV Sbjct: 67 DYRN---LSGAEKRAYDRTLSFLIFLDSIQTANLPY-VGEYVTANEVNLCLTIQAFQEAV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ E RE + + L + + L Sbjct: 123 HSQSYSYMLDSICSPEE------RERILYQWRNDEHLLKRNKFIGDIYNEFQLNKSTHQL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +++ Sbjct: 177 LKTMVANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFQSIILELR 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T E + R M+ E E+A+ + + GL Y++++AN RC Sbjct: 237 KEEPQLFTVEAIAEFRAMIKEGAEQEMAWGEYVIEEEIEGLTQEMVSDYIKYLANLRCEN 296 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G E L+ Y + P W+++ + + +FFE + + Y + + D Sbjct: 297 LGFEILYPGYEDEPASMSWVAQYSNANMIKTDFFEAKPSAYAKSTSIIDD 346 >gi|260912588|ref|ZP_05919119.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] gi|260633300|gb|EEX51459.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472 str. F0295] Length = 348 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 90/357 (25%), Positives = 161/357 (45%), Gaps = 15/357 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M N + + + ++ +RM+ + ++N ++Y WA + Y A NN W+P E+ Sbjct: 1 MDNKLKKNALFNPQGDTDLRQRRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D + L ER + L F +SL + N+ ++ ++ E L Sbjct: 61 NLTQDTKDY---PLLPPAERKAYDKILSFLVFLDSLQSANL-PSLTEFITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E VHS ++ Y++ ++ E R K + L T + Sbjct: 117 QAFQECVHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFYA 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 171 NNDKASLMKTLIANYILEGIYFYSGFMFFYNLARNGKMSGSAQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 ++I+++K E P +T E + M+ E EIA+ + GLN Y++++ Sbjct: 231 NIIHEMKKEEPEYFTPEKVKLYEEMMREGVRQEIAWGQYVIGDEVQGLNGQMVNDYIRYL 290 Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 N R +G LF+ E P W+S+ + + +FFE + T Y + ++ D Sbjct: 291 GNMRWRSLGFGNLFEDNIEEPENMRWVSQYANANMVKTDFFEAKSTAYAKSTAIEDD 347 >gi|313844096|ref|YP_004061759.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1] gi|312599481|gb|ADQ91503.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1] Length = 408 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 91/339 (26%), Positives = 156/339 (46%), Gaps = 28/339 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V + + +L + + PLKY WE Y A ++W EV + DL WK+ L + Sbjct: 88 VEEEYEPLLAPTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 144 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA S+ +V NI + + E R + Q E VH T+ +I Sbjct: 145 NEKKFIKYILAFFAGSDGIVFENINNNFADEVQSSEARSFYAYQCHNEMVHGETYSKLID 204 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 D E F + VP I KA+WA+++ D + + Sbjct: 205 KYIKDGAEKKQLFEAIQTVPCIQKKADWAMKW-------------FDTKSRSFAERLFAF 251 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F F I L + M G+ + I RDE LH F +++ ++I Sbjct: 252 ACVEGIFFSGSFCAIYWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKLLRI------ 305 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 K + +++ EA +E + + +P +G+N+ +Y++++++R QIG+ P++ Sbjct: 306 -KPTTETIHSIVKEAVEIEKGFILDALPCALIGMNSEKMSEYIEYVSDRLLKQIGVPPIW 364 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ++NPF +M E I L + NFFE RV +Y + + + Sbjct: 365 N-SKNPFDFM-ENISLDGKTNFFEKRVGDYGKMDDTSDE 401 >gi|283481249|emb|CAZ69365.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi virus 99B1] Length = 325 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 153/332 (46%), Gaps = 28/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D L P+ + +E+Y A + W +E+ + D W LT++E+ Sbjct: 3 EPILIENEDRFVLFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDW---PKLTENEQHF 59 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+++ +V N+V + PE R + Q E VH+ T+ ++ SL D Sbjct: 60 IKYILAFFATADGVVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVED 119 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E F R + SI KA+WAL++ ++ + + + V EG Sbjct: 120 KDEQRNLFRAIRTIQSIKNKADWALKWMN--------------NERSFAERLIAFAVVEG 165 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE LH +F + H+ K Sbjct: 166 IFFSGAFCAIFWLKKRAIMPGLTFSNELISRDEGLHTDFACMLYRN------HIIHKLPY 219 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + ++ A LE + E +P +G+NA S Y++F+A+R +G + N Sbjct: 220 ETVLDIITNAVELERLFICEALPVSLIGINAESMSTYIKFVADRLLISLGYAKHYNVV-N 278 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF WM E+I L+ + NFFE RV EYQ+ + Sbjct: 279 PFEWM-ELISLEGKTNFFEKRVGEYQKAGVMD 309 >gi|160915703|ref|ZP_02077911.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991] gi|158432179|gb|EDP10468.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991] Length = 353 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 91/356 (25%), Positives = 162/356 (45%), Gaps = 15/356 (4%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 A N P+ ++V ++M+N + ++N +KY WA + Y A NN W+P E+ Sbjct: 7 AMNLQRKPLFNEHGDIDVHLRKMINGNTTNLNDFNHMKYTWASDWYRQAMNNFWIPEEIN 66 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D+ ++ L+ E+ + L F +S+ N+ I +++ E L Q Sbjct: 67 LNQDVKDYR---KLSKAEKDAYDKTLSFLIFLDSIQTANL-PNIGEYITANEVNLCLTIQ 122 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AF+EAVHS ++ Y++ S+ + R K + L + + Sbjct: 123 AFQEAVHSQSYSYMLDSICSPQE------RNAILYQWKDDPHLLARNKFIGDLYNDFMEH 176 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 D E L + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL Sbjct: 177 RDGEHLIKTLIANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRS 236 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 ++ ++K E P L+T E + + ML E+ +A + + GL Y+ ++ Sbjct: 237 ILLELKKEEPQLFTPEHIEIYKGMLKHGVEEEVKWAEYVLGERMEGLTMEMVADYIHYLG 296 Query: 301 NRRCHQIGLEPLFK-YTENP--FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352 N R + +G L+ Y + P W+S + + +FFE + T Y + + L D Sbjct: 297 NLRSNALGFGSLYDGYEKEPASMEWVSMYSNANIIKTDFFEAKSTAYAKSSALVDD 352 >gi|167756571|ref|ZP_02428698.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402] gi|237733862|ref|ZP_04564343.1| ribonucleotide-diphosphate reductase subunit beta [Mollicutes bacterium D7] gi|167702746|gb|EDS17325.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402] gi|229382943|gb|EEO33034.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus sp. D7] Length = 346 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 160/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + ++V +RM+N + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 6 KALFNAKGDIDVRKRRMINGNTTNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLTQDIR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L++ ER + L F +SL N+ I +++ E L QAF+EAV Sbjct: 66 DYR---LLSEAERTAYDKILSFLVFLDSLQTANL-PNIGEYITANEINLCLTIQAFQEAV 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ R+ K + L + + D L Sbjct: 122 HSQSYSYMLDSICSPTK------RDEILYQWKFDEHLLKRNEFIGEQYNAFLEHKDSFHL 175 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +LGR KM G A++ +YI RDE+ HL ++I +++ Sbjct: 176 MKTIMANYILEGIYFYSGFMFFYNLGRMGKMSGSAQEIRYINRDENTHLWLFRNMIIELQ 235 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T E + R ML EIA+ + GL Y+ ++ N R Sbjct: 236 KEEPTLFTPEKIEVYRNMLKRGVEEEIAWGQYVLGNRIEGLTMDMVSDYIHYLGNLRAFS 295 Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 + EPL++ E W+S + + +FFE + T Y + + ++ D Sbjct: 296 LNFEPLYEGFETEPEAMKWVSIYSNANNIKTDFFEAKSTAYAKSSAIEDD 345 >gi|314055235|ref|YP_004063573.1| ribonucleoside-diphosphate reductase small subunit-possible host origin [Ostreococcus tauri virus 2] gi|313575126|emb|CBI70139.1| ribonucleoside-diphosphate reductase small subunit-possible host origin [Ostreococcus tauri virus 2] Length = 408 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 151/339 (44%), Gaps = 31/339 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V + + +L + + PLKY WE Y A ++W EV + DL WK+ L + Sbjct: 88 VGEEYEPILAPTLNRFTVFPLKYPQLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 144 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA S+ +V NI + E R + Q E VH T+ +I Sbjct: 145 NEKKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLID 204 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 D E F + VP I KA WA+++ D + + Sbjct: 205 KYIKDGSEKKQLFEAIQTVPCIEKKAKWAMKW-------------FDTKSRSFAERLFAF 251 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F F I L + M G+ + I RDE LH F +++ ++ Sbjct: 252 ACVEGIFFSGSFCAIYWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLR------- 304 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + + ++ EA +E + + +P +G+N+ +Y++++++R Q+G+ P++ Sbjct: 305 NRPTTETIHAIVKEAVEIEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQVGVPPIW 364 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +NPF +M E I L + NFFE RV +Y +L D Sbjct: 365 N-AKNPFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 398 >gi|19074323|ref|NP_585829.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon cuniculi GB-M1] gi|51701822|sp|Q8SRR2|RIR2_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|19068965|emb|CAD25433.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon cuniculi GB-M1] Length = 325 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 88/331 (26%), Positives = 153/331 (46%), Gaps = 30/331 (9%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + + +L+ + + LLP+KY W+ Y A ++ W EV + D+ W L E Sbjct: 5 EETELLLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDW---GKLNAKE 61 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+V + E R + Q E +HS + +I + Sbjct: 62 RHFISYVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGFQMAIENIHSEMYSLLIDTY 121 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D E F+ R +PS+ KA+WA+++ + +S V + Sbjct: 122 IRDNDEKNFLFDAIRTIPSVKEKADWAIRWIEDKNSD-------------FATRLVAFAC 168 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + M G+ + I RDE LH F + +K + Sbjct: 169 VEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLHYHLKKK------- 221 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + + ++ +A +E + E++P +G+N +Y++F+A+R +G E ++ Sbjct: 222 --CNRIKEVVMDAVEIEKKFLSESLPVNLIGMNCNLMCRYIEFVADRLLENLGEERVYNA 279 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 T NPF +M E I L + NFF+ R ++YQ+ Sbjct: 280 T-NPFDFM-ENISLVGKTNFFDKRESQYQKA 308 >gi|212693366|ref|ZP_03301494.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855] gi|237710423|ref|ZP_04540904.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 9_1_42FAA] gi|237726931|ref|ZP_04557412.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. D4] gi|212664010|gb|EEB24584.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855] gi|229433787|gb|EEO43864.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides dorei 5_1_36/D4] gi|229455145|gb|EEO60866.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 9_1_42FAA] Length = 349 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D Sbjct: 9 NALFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +SL +NN+ I +++ E L QAF+E V Sbjct: 69 DY---PHLDQAERTAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQAFQECV 124 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ E R K + L T + + D L Sbjct: 125 HSQSYSYMLDSICSPEK------RNEILYQWKTDEHLLKRNTFIGNCYNEFQESQDGFTL 178 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K Sbjct: 179 MKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELK 238 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + + M+ E EI + + GLN E Y+Q++ N R Sbjct: 239 KEEPDLFTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNRKMIEDYIQYLGNLRWSS 298 Query: 307 IGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G PL++ + P W+S+ + + +FFE + T Y + L+ D Sbjct: 299 LGFGPLYEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|260591988|ref|ZP_05857446.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella veroralis F0319] gi|260536272|gb|EEX18889.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella veroralis F0319] Length = 348 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 89/357 (24%), Positives = 159/357 (44%), Gaps = 15/357 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + + + V++ +RM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 1 MEDKLKRNTLFNPSGDVDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNL-PTVSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E +HS ++ Y++ ++ E R K + L + + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +I ++K E P ++T+E + M+ E EIA+ + GLN+ Y++++ Sbjct: 231 SIILELKKEEPDMFTEEKVKVYEDMMREGVRQEIAWGQYVIGNDVQGLNSQMVSDYIRYL 290 Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 N R +G L+ + P W+ + + + +FFE R T Y + L D Sbjct: 291 GNLRWSGLGFGFLYPDNQKEPENMKWVGQYSNANMVKTDFFEARSTAYAKSTALIDD 347 >gi|320107274|ref|YP_004182864.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4] gi|319925795|gb|ADV82870.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4] Length = 346 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 100/316 (31%), Positives = 171/316 (54%), Gaps = 8/316 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y ++ + N W EV Q DL K + LT E I+R + FFA+ + Sbjct: 25 LRPMRYPQFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LTPAEIHTIQRLVAFFATGD 82 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + + E F Sbjct: 83 SIVSNNLVLNLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDNYIPEPEERNAAFAAVE 142 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI+ KA++ +++ ++ TK+ ++FL +L F EG++F+ FA + Sbjct: 143 NIPSISKKADFCMKWMDSIQQLD-QLETKEHRRQFLLNLICFAACIEGLFFFAAFAYVYF 201 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDES HL F +V+ ++ + P LW E +++ M+ EA Sbjct: 202 FRSKGLLHGLASGTNWVFRDESAHLEFAFEVVQVVRAQEPDLWDTELERQVVVMMEEAID 261 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E +A + + G GL+ QY+ ++A+ R ++G+ F +NPF +M E+ D++ Sbjct: 262 AEAQFAEDLLSGGVAGLSVRDMRQYLGYVADSRLERLGIGAHFN-AKNPFSFM-ELQDVQ 319 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE RV+ YQ Sbjct: 320 ELTNFFERRVSAYQTA 335 >gi|15150459|ref|NP_150454.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease virus NI-2490] gi|15149031|gb|AAK84981.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease virus NI-2490] gi|22595554|gb|AAN02587.1| ribonucleotide reductase small subunit [Lumpy skin disease virus NW-LW] Length = 321 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 88/332 (26%), Positives = 147/332 (44%), Gaps = 28/332 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+ Y W Y A + W EV + DLA WK L+++E+ Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLSNEEQYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN + I K+ WA ++ + + + + EG Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI-------------SNKKASFGERLIAFAAVEG 165 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + +K Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLKY-------PPSN 218 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + +++EA +E + +P +G+N QY++FIA+R ++G + +F + N Sbjct: 219 EIITIIINEAVSIEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVF-MSTN 277 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M E I L+ + NFFE RV+EYQ+ + Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308 >gi|150005609|ref|YP_001300353.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides vulgatus ATCC 8482] gi|254884474|ref|ZP_05257184.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 4_3_47FAA] gi|294778581|ref|ZP_06744003.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides vulgatus PC510] gi|319640834|ref|ZP_07995547.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_1_40A] gi|149934033|gb|ABR40731.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides vulgatus ATCC 8482] gi|254837267|gb|EET17576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp. 4_3_47FAA] gi|294447530|gb|EFG16108.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides vulgatus PC510] gi|317387646|gb|EFV68512.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp. 3_1_40A] Length = 349 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D Sbjct: 9 NALFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +SL +NN+ I +++ E L QAF+E V Sbjct: 69 DY---PHLDQAERTAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQAFQECV 124 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ E R K + L T + + D L Sbjct: 125 HSQSYSYMLDSICSPEK------RNEILYQWKTDGHLLKRNTFIGNCYNEFQESQDGFTL 178 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K Sbjct: 179 MKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELK 238 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + + M+ E EI + + GLN E Y+Q++ N R Sbjct: 239 KEEPDLFTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNRKMIEDYIQYLGNLRWSS 298 Query: 307 IGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G PL++ + P W+S+ + + +FFE + T Y + L+ D Sbjct: 299 LGFGPLYEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|308485547|ref|XP_003104972.1| hypothetical protein CRE_24501 [Caenorhabditis remanei] gi|308257293|gb|EFP01246.1| hypothetical protein CRE_24501 [Caenorhabditis remanei] Length = 323 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P+++ W Y A + W EV + D+A W+ L+ DE+ Sbjct: 4 EPLLVESGIRFVIYPIEHHDIWSFYKKALASFWTTEEVDVGKDMADWE---RLSADEKKF 60 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + E R + Q E +HS T+ +I + D Sbjct: 61 ISTVLAFFAASDGIVVENLCSRFANEVKIVEARFFYGFQIAVENIHSETYAKLIETYIKD 120 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F+ + I KA+WAL++ ++SP V + EG Sbjct: 121 ERERLVLFDAIKNFEFIKKKADWALRWISDMTSP-------------FAHRLVAFAAVEG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + + G+ + I RDE LH +F + +I K + Sbjct: 168 IFFSGSFASIFWLKKRGLLPGLTHSNELISRDEGLHRDFACLLFTKI-------VDKPSR 220 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + ++ EA +E+ + + +P +G+N QY++++A+ ++G E L+ +T N Sbjct: 221 EIVCEIVDEAVTIELEFLDQALPVNVIGMNYTLMSQYIKYVADHLLEELGFEKLY-HTIN 279 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 PF +M E I + + NFFE RV+EYQ+ + Sbjct: 280 PFDFM-ENISIDGKTNFFEKRVSEYQRSGVMAD 311 >gi|320527966|ref|ZP_08029132.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium moorei F0204] gi|320131592|gb|EFW24156.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium moorei F0204] Length = 349 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 89/356 (25%), Positives = 164/356 (46%), Gaps = 15/356 (4%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + P+ E ++V ++R++N + ++N +KY W + Y A NN W+P E+ Sbjct: 3 TDQINRKPLFNPEGDIDVRNRRLINFNTTNINDFNNMKYNWVSDWYRQAMNNFWVPEEIN 62 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D + + L+ E+ + L F +SL + N+ I ++++ E L Q Sbjct: 63 LNQDKSDY---PRLSLAEKTAYDKILSFLVYLDSLQSANL-PNISQYITANEVNLCLSIQ 118 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 F+E +HS ++ Y++ S+ E R K + L + Sbjct: 119 TFQECIHSQSYSYMLDSICSPEQ------RNDILYQWKTDEHLLKRNEFIGELYNEFVAK 172 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 D++ + + + EG++FY+GF +L R KM G ++ +YI RDES HL + Sbjct: 173 QDKQSFLRVCIANFILEGVYFYSGFMFFYNLARNGKMPGSVQEIRYINRDESTHLWLFRN 232 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 ++ +++ E P L+T E Q R M++ EIA+ H + GLN Y++++ Sbjct: 233 ILVELQKEEPELFTPENIQMIREMMNTGVEQEIAWGHYVIGDEIPGLNKQMVTDYIKYLG 292 Query: 301 NRRCHQIGLEPLF-KYTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 N R +G L+ +Y E P W+ + D + +FFE R + Y + ++ D Sbjct: 293 NTRFATLGFGNLYEEYAEEPESMKWVKQYSDANMVKTDFFEARPSAYAKSGAIEDD 348 >gi|319936387|ref|ZP_08010803.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus sp. 29_1] gi|319808502|gb|EFW05054.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus sp. 29_1] Length = 346 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 156/350 (44%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + ++V +RM+N + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 6 KALFNASGDIDVRKRRMINGNTTNLNDFNNMKYNWVSDWYRQAMNNFWIPEEINLTQDIK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L + E+ + L F +SL N+ + +++ E L QAF+EAV Sbjct: 66 DYR---LLNEHEKTAYDKILSFLVFLDSLQTANL-PNVGEYITANEINLCLTIQAFQEAV 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ R+ K + L + + D Sbjct: 122 HSQSYSYMLDSICSPIE------RDEILYQWKYDEHLLKRNEFIGEQYNAFLEHKDSFHF 175 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +LGR KM G A++ +YI RDE+ HL ++I +++ Sbjct: 176 MKTVIANYILEGIYFYSGFMFFYNLGRMGKMPGSAQEIRYINRDENTHLWLFRNMILELQ 235 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + + R M+ EIA+ + GL Y+ ++ N R Sbjct: 236 KEEPDLFTPDKIEVYRDMMKRGVEEEIAWGQYVLGDRIEGLTMKMVSDYIHYLGNFRAQA 295 Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 + EPLF+ W+S + + +FFE R + Y + + L+ D Sbjct: 296 LNFEPLFEDYMQEPESMKWVSIYSNANDIKTDFFEARSSAYAKSSALEDD 345 >gi|152993970|ref|YP_001359691.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurovum sp. NBC37-1] gi|151425831|dbj|BAF73334.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp. NBC37-1] Length = 339 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 101/347 (29%), Positives = 171/347 (49%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I E D+++ + + +L +KY WA+ + NN W P EV M D+ Sbjct: 4 KKIYNPESEERTSDRKIFGGDPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDVN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K LTD E+ + L +SL NNI+ + ++ PE L+RQAFEEA+ Sbjct: 64 DYK---RLTDAEKQAYDKVLAQLIFMDSLQTNNIIDNLNPFITAPEVNLILVRQAFEEAL 120 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ S+ + E++ ++R + +K + + + LS ++ E + Sbjct: 121 HSQSYAVMVDSISTNSEEIYELWRRDMKLKSKNDAIAKVYEELS--------ENPTDENI 172 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF + +L R++KM+G A+ ++I RDE HL ++IN K Sbjct: 173 VKAMFANQILEGIYFYSGFTYLYTLARSDKMLGTAQMIRFIQRDEVTHLLLFQNMINATK 232 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+TKE M +A LE + +GL EQY+Q++A++R H Sbjct: 233 RERPELFTKELIDDVYQMFRDAVKLECEWGTYITQGQILGLTNEIIEQYIQYLADKRLHA 292 Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352 +GLE ++ E+P W+ ++ NFFE VT Y +G+ D Sbjct: 293 VGLEKIYNV-EHPIKWVDNFSQFNDQKTNFFEGNVTNYSKGSLDLDD 338 >gi|315452596|ref|YP_004072866.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis ATCC 49179] gi|315131648|emb|CBY82276.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis ATCC 49179] Length = 347 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 171/346 (49%), Gaps = 14/346 (4%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 + G I + D+R+ + + L +KY WA + + + +N W P EV M Sbjct: 8 SLGRKKIYNPQSAEPAKDRRIFGGNPTGMFDLNQIKYQWAHKIWKTMLHNTWFPEEVSMH 67 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + L+ E++ R L +SL NN++ I +++PE L+RQA+ Sbjct: 68 GDKTHY---LKLSTQEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAY 124 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EEA+HSH++ ++ S+ + E++ M+R ++ K + Q L+ Sbjct: 125 EEALHSHSYAVMVESISANSDEIYEMWRTDEALKNKNDCVAQVYMDLA--------HTQT 176 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 + L V + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL +I Sbjct: 177 ERNLLKALVANQILEGIYFYSGFSFFYALARSGKMLGSAQMIRFIQRDEVTHLALFQSMI 236 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 + +K E P L++K+ ++ M EA LE + + LN + Y++++A+ Sbjct: 237 HTLKKERPDLFSKDLVEEILEMFKEAVDLESTWGRVITQGEILDLNPVTLRAYIEYLADT 296 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGA 347 R H IGL ++ +T++P W+ + + NFFE RV+ Y +G+ Sbjct: 297 RLHAIGLPKIY-HTKHPMRWVDQFSSFNSQRSNFFEARVSNYSKGS 341 >gi|265756566|ref|ZP_06090772.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 3_1_33FAA] gi|263233754|gb|EEZ19369.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp. 3_1_33FAA] Length = 349 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D Sbjct: 9 NALFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +SL +NN+ I +++ E L QAF+E V Sbjct: 69 DY---PHLDQAERTAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQAFQECV 124 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ E R K + L T + + D L Sbjct: 125 HSQSYSYMLDSICSPEK------RNEILYQWKTDEHLLKRNTFIGNCYNEFQESQDGFTL 178 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K Sbjct: 179 MKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELK 238 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + + M+ E EI + + GLN E Y+Q++ N R Sbjct: 239 KEEPDLFTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNWKMIEDYIQYLGNLRWSS 298 Query: 307 IGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G PL++ + P W+S+ + + +FFE + T Y + L+ D Sbjct: 299 LGFGPLYEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|282860353|ref|ZP_06269421.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella bivia JCVIHMP010] gi|282586851|gb|EFB92088.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella bivia JCVIHMP010] Length = 347 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 156/355 (43%), Gaps = 15/355 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + + + ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + Sbjct: 2 EQLQRNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINL 61 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ + L ER + L F +SL +NN+ I +++ E L Q Sbjct: 62 AQDIKDY---PNLPPAERKAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQT 117 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 F+E VHS ++ Y++ S+ E R K + L T + Sbjct: 118 FQECVHSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQAHR 171 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 ++ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++ Sbjct: 172 NKFCLMKACIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNM 231 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 I ++K E P L+T E M+ E EIA+ + GL Y++++ N Sbjct: 232 IIELKQEEPELFTPEKVAIYEAMMREGVAQEIAWGQYVIGNEVQGLTQQMVSDYIRYLGN 291 Query: 302 RRCHQIGLEPLFKYTE-NP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 R +G + LF+ + P W+++ + + +FFE + T Y + L D Sbjct: 292 LRWKSLGFDYLFEDNQTEPTDMEWVAQYSNANMVKTDFFEAKSTAYAKSTALIDD 346 >gi|161760549|ref|NP_906664.2| ribonucleotide-diphosphate reductase subunit beta [Wolinella succinogenes DSM 1740] Length = 341 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 171/342 (50%), Gaps = 13/342 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + V+++++ + + +L +KY WA+ + N W P EV M D Sbjct: 5 KKIYNPQSTETVNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTPDKR 64 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + GLT E+L R L +SL NN++ + ++++PE L+RQAFEEA+ Sbjct: 65 DYN--GGLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ S+ + E++ M+R + +K + + L+ K+ + Sbjct: 123 HSQSYAVMVESISANTDEIYEMWRVDMQLKSKNDHIAGVYEELA--------KNPTDSAM 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY GF+ +L R+ KM+G A+ ++I RDE HL ++IN +K Sbjct: 175 LKAMFANQILEGIYFYAGFSFFYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINALK 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+TK +++ M +A +E A+ +GL + +Y+Q++A+ R + Sbjct: 235 KERPDLFTKSLEEEVVEMFRKAVAVESAWGDYITQGQILGLTSEIIHEYIQYLADDRLKR 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGA 347 +G+ L+ ++P W+ + + + NFFE VT Y +G+ Sbjct: 295 VGMPILYN-AKHPIKWVDQFSSFNEQKTNFFEGNVTNYAKGS 335 >gi|289677030|ref|ZP_06497920.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae FF5] Length = 243 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 153/243 (62%), Positives = 192/243 (79%) Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169 NPE RQY+LRQAFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++ Sbjct: 1 NPEGRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSI 60 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 S P F TGT D D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+R Sbjct: 61 SDPKFETGTVDTDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILR 120 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DES+HLNFGIDVINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA Sbjct: 121 DESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNA 180 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 E Y++FIANRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L Sbjct: 181 AMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGAL 240 Query: 350 KWD 352 WD Sbjct: 241 SWD 243 >gi|282879357|ref|ZP_06288101.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella buccalis ATCC 35310] gi|282881358|ref|ZP_06290037.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella timonensis CRIS 5C-B1] gi|281298554|gb|EFA90979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella buccalis ATCC 35310] gi|281304764|gb|EFA96845.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella timonensis CRIS 5C-B1] Length = 347 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 161/350 (46%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + ++ +RM+ + ++N +KY WA + Y A NN W+P E+ + D Sbjct: 7 NSLFNPNGDTDLRLRRMIGGNTTNLNDFNNMKYQWASDWYRQAMNNFWIPEEINLTQDTK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +SL +NN+ ++ +++ E L QAF+E V Sbjct: 67 DY---PRLDKAERTAYDKILSFLVFLDSLQSNNL-PSLCEYITANEVNLCLHIQAFQECV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ E R K + L T + + D L Sbjct: 123 HSQSYSYMLDTICSPEQ------RNDILYQWKTDEHLLRRNTFIGNCYNEFHEKQDLYAL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K Sbjct: 177 MKTCIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIKELK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P ++T E + M+ E EIA+ + GLNA Y+ ++ N R H Sbjct: 237 KEEPEMFTPEKVKVYEEMMREGVRQEIAWGQYVIGNDIQGLNAQMVTDYIHYLGNLRWHS 296 Query: 307 IGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G + L++ + P W+++ D + +FFE + T Y + ++ D Sbjct: 297 LGFDYLYEDNQKEPEDMKWVAQYSDPNMVKTDFFEAKSTAYAKSTAIEDD 346 >gi|296271635|ref|YP_003654266.1| ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM 7299] gi|296095810|gb|ADG91760.1| Ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM 7299] Length = 339 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 96/349 (27%), Positives = 166/349 (47%), Gaps = 15/349 (4%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 I + + ++ D+R+ D + +KY WA + + N W P EV M D Sbjct: 2 ARKTIYNPDSKESLSDRRIFGGNPDGMINFTKMKYQWALNLWDTMEANTWFPREVQMTGD 61 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 +K LT E+ M L +SL NN++ I +++ PE L RQ++EE Sbjct: 62 AKDYKY---LTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITVPEINACLSRQSYEE 118 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A HS ++ ++ S+ + E+++M++ + K N+ LS + E Sbjct: 119 ANHSKSYAVMVESISDNTDEIYDMWKNDTQLREKNNYIAAVYDNLSD--------NITDE 170 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + EG++FY GFA I +LG++ KM+G ++ ++I RDE HL ++IN Sbjct: 171 KMVLAMFANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIKFIQRDEVTHLLLFQNMINS 230 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + E P L+T E + K R M +A LE A+ +G QY+Q++A++R Sbjct: 231 TRKERPDLFTPELEVKVRAMFRKAVELEAAWGAYITQGQILGFTDGIITQYIQYLADKRL 290 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G +P + ++P PW+ + NFFE V Y +G+ + +D Sbjct: 291 DAVGYKPEYNV-KHPIPWVDGYSSFNDQRTNFFEGNVVNYSKGS-IDFD 337 >gi|76630263|ref|XP_880783.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 3 [Bos taurus] gi|297480612|ref|XP_002691528.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 2 [Bos taurus] gi|296482362|gb|DAA24477.1| ribonucleotide reductase M2 polypeptide isoform 2 [Bos taurus] Length = 341 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 85/299 (28%), Positives = 138/299 (46%), Gaps = 29/299 (9%) Query: 56 PTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 P+E V + D+ W+ L +ER I L FFA+S+ +V N+V + + E R Sbjct: 55 PSEPVDLSKDIQHWE---ALKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 111 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSS 171 + Q E +HS + +I + D E FN +P + KA+WAL++ Sbjct: 112 CFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWI----- 166 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + V + EG++F FA I L + M G+ + I RDE Sbjct: 167 --------GDKAATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 218 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 LH +F + HL K +Q+ + ++ A +E + E +P +G+N Sbjct: 219 GLHCDFACLMFK-------HLLHKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTL 271 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +QY++F+A+R ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 272 MKQYIEFVADRLMLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 328 >gi|88682973|gb|AAI05512.1| RRM2 protein [Bos taurus] Length = 338 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 85/299 (28%), Positives = 138/299 (46%), Gaps = 29/299 (9%) Query: 56 PTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 P+E V + D+ W+ L +ER I L FFA+S+ +V N+V + + E R Sbjct: 52 PSEPVDLSKDIQHWE---ALKSEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEAR 108 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSS 171 + Q E +HS + +I + D E FN +P + KA+WAL++ Sbjct: 109 CFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALRWI----- 163 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + V + EG++F FA I L + M G+ + I RDE Sbjct: 164 --------GDKAATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDE 215 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 LH +F + HL K +Q+ + ++ A +E + E +P +G+N Sbjct: 216 GLHCDFACLMFK-------HLLHKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTL 268 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +QY++F+A+R ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 269 MKQYIEFVADRLMLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 325 >gi|288801822|ref|ZP_06407264.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica D18] gi|302344783|ref|YP_003813136.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica ATCC 25845] gi|288335864|gb|EFC74297.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica D18] gi|302149273|gb|ADK95535.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella melaninogenica ATCC 25845] Length = 348 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 89/357 (24%), Positives = 157/357 (43%), Gaps = 15/357 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M N + + + + +RM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 1 MDNQLKRNTLFNPSGDIELRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQD---FKDYPRLEKAERTAYDKILSFLVFLDSLQSNNL-PTLSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E +HS ++ Y++ ++ E R K + L + + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +I ++K E P ++T E + M+ E EIA+ + GLNA Y++++ Sbjct: 231 SIILELKKEEPDMFTPEKIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNAQMVSDYIRYL 290 Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 N R +G L+ + P W+ + + + +FFE + T Y + L D Sbjct: 291 GNLRWSGLGFGFLYDDNQKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALIDD 347 >gi|227501022|ref|ZP_03931071.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC 35098] gi|227216795|gb|EEI82193.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC 35098] Length = 352 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + +++ ++++ + ++N LKY W + Y A NN W+P E+ + D+ + Sbjct: 14 IFNEDGDIDLGKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L E+ R L F +S+ N+ + +++ E L Q ++E++HS Sbjct: 74 R---KLDQYEKKAYDRILSFLTYLDSIQTANL-PNLQTYITANEINLCLSIQTYQESIHS 129 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ YI+ ++ E R K + L + ++ D+ Sbjct: 130 QSYSYILDTICSPEE------RTRILYLWKEDEHLLKRNEFIGEQYNEFLENDDEFRFMK 183 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + V + EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL +IN +K E Sbjct: 184 VLVANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKE 243 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 L+ E Q R ML E EIA+ + GLN E Y++++ N R +G Sbjct: 244 REDLFVPELQNYYRNMLKEGVEQEIAWGKYAIGNEIAGLNEKMIEDYIKYLGNLRAKGLG 303 Query: 309 LEPLFKY-TENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 LE L++ E P W+ E D + +FFE +VT Y + + ++ D Sbjct: 304 LEALYEGFDEIPESMKWVDEYSDPNGVKTDFFEAKVTAYSKSSIIEDD 351 >gi|288800286|ref|ZP_06405744.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288332499|gb|EFC70979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 347 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 89/351 (25%), Positives = 161/351 (45%), Gaps = 17/351 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D Sbjct: 7 NALFNPMGDTDLRLRRMIGGNTTNLNDFNNMRYQWVSDWYRQAMNNFWIPEEINLTQDTK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +SL + N+ ++ +++ E L QAF+E V Sbjct: 67 DY---PKLDKAERTAYDKILSFLVFLDSLQSTNL-PSLTEYVTANEVNLCLHIQAFQECV 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ ++ E R K + L T + + D+ L Sbjct: 123 HSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLKRNTFIGDLYNEFHEKRDRYTL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K Sbjct: 177 VKTCIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIQELK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + M+ E EIA+ + GLNA + Y++++ N R H Sbjct: 237 KEEPDLFTPDKVAVYEAMMREGVEQEIAWGQYVIGNDIQGLNAQMVDDYIRYLGNLRWHS 296 Query: 307 IGLEPLFKYT----ENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G + L++ EN W+S+ + + +FFE + T Y + L+ D Sbjct: 297 LGFDYLYEDNRTEPEN-MRWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 346 >gi|9632043|ref|NP_048832.1| hypothetical protein PBCV1_A476R [Paramecium bursaria Chlorella virus 1] gi|1620147|gb|AAC96843.1| contains ribonucleotide reductase (RR) signature; similar to tobacco RR small subunit, corresponds to Swiss-Prot Accession Number P49730 [Paramecium bursaria Chlorella virus 1] Length = 324 Score = 284 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 97/336 (28%), Positives = 163/336 (48%), Gaps = 29/336 (8%) Query: 19 VDDKRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + + +L P++Y W+ Y A W EVP+ D+ W+ L DD Sbjct: 2 ANQEPILADNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWRE--KLNDD 59 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER IK LGFFA S+ +V N+ ++ PE RQ+ Q F E++HS + +I + Sbjct: 60 ERHFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDA 119 Query: 138 LGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 L DE ELF+ +P++ KA WA ++ + + + V +V Sbjct: 120 LISDEQERNELFDAIENIPAVHNKAKWAQKWLE--------------PGKSFAERLVAWV 165 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG+ F F I L M G+ ++I RDE LH FG + ++++ + P Sbjct: 166 CVEGILFSGSFCAIFWLRNKGVMPGLGLSNEFISRDEGLHQQFGELMYSKLQNKLP---- 221 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + + ++ EA E + + +P +G+NA QY++F+A+R +G E ++ Sbjct: 222 ---FETVKQIITEAVENEKEFICDAIPCRLIGMNAELMGQYIEFVADRIFVALGYEKVYN 278 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++NPF +M E+I L+ + NFFE RV++YQ+ +K Sbjct: 279 -SKNPFAFM-ELISLQGKTNFFEKRVSDYQRPGVMK 312 >gi|319902178|ref|YP_004161906.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108] gi|319417209|gb|ADV44320.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108] Length = 347 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 157/355 (44%), Gaps = 15/355 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N + + + +RM+ + ++N ++Y W + Y A NN W+P E+ + Sbjct: 2 NKLKRNALFNPSGDTEILHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINL 61 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + L ER+ + L F +SL +NN+ + +++ E L QA Sbjct: 62 TQDTKDY---PLLDKAERVAYDKILSFLVFLDSLQSNNL-PTLSEYITANEVNLCLHIQA 117 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 F+E VHS ++ Y++ S+ E R K + L T + + Sbjct: 118 FQECVHSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLKRNTFIGNCYNEFQESQ 171 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 + L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++ Sbjct: 172 NGFALVKTLIANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNI 231 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 I ++K E P L+ + + M+ E EIA+ + GL+ E Y+ ++ N Sbjct: 232 ILELKKEEPELFVPDKVKVYEEMMREGVKQEIAWGQYVIGDNIQGLSRKMLEDYIHYLGN 291 Query: 302 RRCHQIGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 R +G PL++ + W+S+ + + +FFE + T Y + L+ D Sbjct: 292 LRWKSLGYAPLYEDNQTEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 346 >gi|223983469|ref|ZP_03633655.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM 12042] gi|223964641|gb|EEF68967.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM 12042] Length = 348 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 157/357 (43%), Gaps = 15/357 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M+ + + + +V +RM+N + ++N LKYGW + Y A NN W+P E+ Sbjct: 1 MSESLKRKALFNAQGDTDVRRRRMINGNTTNLNDFNTLKYGWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + DL + L + + + L F +S+ N+ I ++ E L Sbjct: 61 NLGQDLKDY---PKLEPAVKTALDKTLSFLIFLDSIQTANL-PNIGEVITANEINLCLTI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+EAVHS ++ Y++ S + R K + L + + Sbjct: 117 QAFQEAVHSQSYSYMLDSFCSPDQ------RTEILYQWKEDPRLLKRNEFIGGLYNEFIE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 L + + EG++FY+GF +LGR M G ++ +YI RDE+ HL Sbjct: 171 QRTPVQLMKTLIANYILEGIYFYSGFMFFYNLGRMGLMPGSVQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +I +++ E P L+T E +Q R ML + EI + + GLN Y++++ Sbjct: 231 SMILELRKEEPQLFTPEREQLYREMLKQGVEEEIEWGCAILGDEIPGLNKTMIRDYIRYL 290 Query: 300 ANRRCHQIGLEPLFKYTEN---PFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 N R I LE L+ E W+S+ + + +FFE R + Y + + LK D Sbjct: 291 GNLRAKAIHLEILYPGEEEEPASMKWVSQYANANLIKTDFFEARSSAYAKASALKDD 347 >gi|188588149|ref|YP_001919720.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium botulinum E3 str. Alaska E43] gi|251778737|ref|ZP_04821657.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188498430|gb|ACD51566.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum E3 str. Alaska E43] gi|243083052|gb|EES48942.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 344 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 164/348 (47%), Gaps = 13/348 (3%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ + KR++N + ++N +KY WA + Y NN W+P E+ + DL Sbjct: 6 KPLFNEFGDRDPRLKRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K L +ER + L F +S+ N+ I +++ E L Q+F+EAV Sbjct: 66 DYK---KLLPEERTAYDKILSFLIFLDSIQTANL-SNINSYITASEINLCLTIQSFQEAV 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ E R K + L + + ++ L Sbjct: 122 HSQSYSYMLDSICSPEE------RNEILYQWKDDEILLKRNKFIGDLYNEFINNPNEYNL 175 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++ Sbjct: 176 IKTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQ 235 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 ENP +T + + + + M+ EI + H + G+N E Y++++ N+R + Sbjct: 236 SENPESFTTDLKNELKEMMRIGVENEILWGHYVIGDKIQGINKKLIEDYIKYLGNKRLKE 295 Query: 307 IGLEPLFKY-TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 IGL LF+ ENP W+ V + + +FFE + T Y + + L D Sbjct: 296 IGLGMLFEGFEENPATWVDVVANSNSVKTDFFEAKSTAYAKVSTLIDD 343 >gi|291165654|gb|EFE27703.1| ribonucleoside-diphosphate reductase, beta subunit [Filifactor alocis ATCC 35896] Length = 348 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 90/357 (25%), Positives = 163/357 (45%), Gaps = 15/357 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + + + +RM+N + ++N +KY W + Y A NN W+P E+ Sbjct: 1 MVEEIKRKQLFNENGDIELSKRRMINGNTTNLNDFNNMKYTWVSDWYRHAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D+ +++ L +E+ + L F +SL N+ + ++ E L Sbjct: 61 NLTQDIKDYRN---LEIEEKEAYDKILSFLIFLDSLQTANL-PNVGEFITANEVNLCLTI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QA++EA+HS ++ YI+ S+ E R K + L + Sbjct: 117 QAYQEAIHSQSYGYILDSICSPEE------RTEILYQWKDDPFLLARNKFIGDQYNDFYY 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + + L + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL Sbjct: 171 NRTKYNLVKTVIANYILEGIYFYSGFMFFYALGRNGKMPGTVQEIRYINRDENSHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +I ++K E P L+T E + R M+ + EI +A+ + GL E Y++++ Sbjct: 231 SIILELKKEEPELFTPENIEVFRNMIRQGVEEEIKWANYVIGDHIKGLTMQMVEDYLKYL 290 Query: 300 ANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 N RC +G EP+++ W+SE D + +FFE +V+ Y + + ++ D Sbjct: 291 GNLRCRGLGFEPIYEGYQREPESMSWVSEYSDPNAIKTDFFEGKVSAYAKSSVIEDD 347 >gi|288928561|ref|ZP_06422408.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288331395|gb|EFC69979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 348 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 89/357 (24%), Positives = 161/357 (45%), Gaps = 15/357 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M N + + + ++ +RM+ + ++N ++Y WA + Y A NN W+P E+ Sbjct: 1 MDNKLKKNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D + L ER + L F +SL + N+ ++ ++ E L Sbjct: 61 NLTQDTKDY---PLLPPAERKAYDKILSFLVFLDSLQSANL-PSLTEFITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E VHS ++ Y++ ++ E R K + L T + Sbjct: 117 QAFQECVHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFYA 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 171 NNDKASLMKTLMANYILEGIYFYSGFMFFYNLARNGKMSGSAQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 ++I+++K E P +T E + M+ E EIA+ + GLNA Y++++ Sbjct: 231 NIIHEMKKEEPEYFTPEKVKVYEEMMREGVRQEIAWGQYVIGDEVQGLNAQMVNDYIRYL 290 Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 N R +G L + E P W+++ + + +FFE + T Y + ++ D Sbjct: 291 GNMRWRSLGFGNLLEDNIEEPENMRWVAQYANANMVKTDFFEAKSTAYAKSTAIEDD 347 >gi|325268390|ref|ZP_08135022.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella multiformis DSM 16608] gi|324989244|gb|EGC21195.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella multiformis DSM 16608] Length = 348 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 87/357 (24%), Positives = 156/357 (43%), Gaps = 15/357 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M N + + ++ +RM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 1 MDNKLKRNTLFNPSGDTDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNL-PTVSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E +HS ++ Y++ ++ E R K + L + + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +I ++K E P ++T + + M+ E EIA+ + GLN Y++++ Sbjct: 231 SIILELKKEEPDMFTPDRIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290 Query: 300 ANRRCHQIGLEPLF-KYTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 N R +G L+ + P W+ + + + +FFE + T Y + L D Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALADD 347 >gi|313768358|ref|YP_004062038.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1] gi|312599054|gb|ADQ91078.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1] Length = 388 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 91/334 (27%), Positives = 152/334 (45%), Gaps = 32/334 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + + + PLKY WE Y A ++W EV + D+ WK+ L D+E+ Sbjct: 74 EPILASTLNRFTVFPLKYPELWELYKKAQMSNWTAEEVDLSKDMDDWKT---LNDNEQKF 130 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA S+ +V NI + E R + Q+ E VH T+ +I D Sbjct: 131 IKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQSHNEMVHGETYSKLIDKYIKD 190 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E F + VP I KANWAL++ + + EG Sbjct: 191 GAEKKQLFEAIQTVPCIERKANWALKWFD--------------KSRPFAERLFAFACVEG 236 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE LH F +++ ++ K Sbjct: 237 IFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKLLR-------NKPST 289 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + +++ EA +E + + +P +G+N+ +Y++++++R Q+G P++ ++N Sbjct: 290 ETIHSIVKEAVEIEKNFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQVGQPPIWN-SKN 348 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PF +M E I L + NFFE RV +Y +L D Sbjct: 349 PFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 378 >gi|168702494|ref|ZP_02734771.1| ribonucleoside-diphosphate reductase, beta subunit [Gemmata obscuriglobus UQM 2246] Length = 332 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 102/316 (32%), Positives = 168/316 (53%), Gaps = 8/316 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E Y A N W EV DLA + +T ER +I R + FFA+ + Sbjct: 11 LRPMRYPPFFEMYKDAIKNTWTVDEVDFSTDLADLR--GRVTPAERHLIHRLVAFFATGD 68 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM---YR 150 S+V NN+VL +Y+H++ PE R YL RQ +EEA+H + ++ + D Sbjct: 69 SIVGNNLVLNLYKHVNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDMAAREAAFAAVD 128 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA++ ++ ++ T+ + FL +L F EG++F+ FA + Sbjct: 129 NIPSIKLKADFCFKWIDSIEGLDRLE-TRAHRRAFLLNLVCFAACIEGLFFFAAFAYVYF 187 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES H+ F VI+ ++ E P L+ E + + ML EA Sbjct: 188 LRSKGLLHGLATGTNWVFRDESAHMAFAFRVIDTVRREEPDLFDAELEAQIVAMLREAVE 247 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E A+A + + +G GL+ Y++++A+RR +G+ P+F +NPF +M + D++ Sbjct: 248 CETAFARDVLGQGVAGLSLADLRSYLEYVADRRLESLGIAPVFG-AKNPFGFMD-LQDVQ 305 Query: 331 KEKNFFETRVTEYQQG 346 + NFFE RV+ YQ G Sbjct: 306 ELTNFFERRVSAYQLG 321 >gi|11544907|emb|CAC17632.1| class I ribonucleotide-diphosphate reductase small chain [Streptomyces microflavus] Length = 321 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 99/310 (31%), Positives = 168/310 (54%), Gaps = 9/310 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+ + Sbjct: 18 LRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATGD 74 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM---YR 150 S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D E Sbjct: 75 SIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPAERAAAFAAVE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA + ++ ++ T+ + FL +L F EG++FY FA + Sbjct: 135 NIPSIRDKAQFCFKWMDSVEKID-QLETRADRRRFLLNLICFAACIEGLFFYGAFAYVYW 193 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A ++ RDE++H+NF +V++ ++ E P L+ Q++ ML EA Sbjct: 194 FRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQEQVTAMLKEAVE 253 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ + + +G G+N S +Y+Q +A++R ++G P++ +ENPF +M E+ ++ Sbjct: 254 AELQFGRDLCGEGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SENPFAFM-ELQGVQ 311 Query: 331 KEKNFFETRV 340 + NFFE R Sbjct: 312 ELTNFFERRP 321 >gi|255658865|ref|ZP_05404274.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella multacida DSM 20544] gi|260849270|gb|EEX69277.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella multacida DSM 20544] Length = 347 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 163/349 (46%), Gaps = 15/349 (4%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 P+ E ++V +R++ + ++N LKY W + Y A NN W+P E+ + D+ Sbjct: 8 PLFNPEGDIDVTQRRLIGGNTTNMNDFNNLKYTWTADWYRQAMNNFWIPEEINLGQDVKD 67 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 ++ L ER + L F +S+ + N+ + +++ E L Q+F+E VH Sbjct: 68 YRQ---LPAAERRAYDKILSFLVFLDSVQSANL-PNVSAYITANEVDLCLTIQSFQECVH 123 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y++ ++ + R+ K + L T + ++ +E Sbjct: 124 SQSYSYMLDTIASPDE------RQEIIFQWKDDEHLLARNTFIGDLYNEFQQEQSRENFL 177 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + + + EG++FY+GF +LGR +M G ++ +YI RDE+ HL +++ ++ Sbjct: 178 RVLIANYILEGIYFYSGFMFFYNLGRIGRMPGSVQEIRYINRDENTHLWLFRNILRDLRA 237 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E P L+T E ++ R M+ E EIA+ + GLN E Y+ ++ N R I Sbjct: 238 EEPDLFTPEREEMMREMIREGVRQEIAWGKYAIGNEVEGLNEKMIEDYVHYLGNARAESI 297 Query: 308 GLEPLFKY-TENP--FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352 GL L++ E P W+S+ + + +F E R T Y + L D Sbjct: 298 GLGTLYEGFEEEPSSMRWVSQYANPNFIKTDFIEGRSTAYAKSTALVDD 346 >gi|157953769|ref|YP_001498660.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella virus AR158] gi|156068417|gb|ABU44124.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella virus AR158] Length = 324 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 96/325 (29%), Positives = 160/325 (49%), Gaps = 28/325 (8%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S P++Y W+ Y A W EVP+ D+ W+ L DDER IK LGF Sbjct: 13 SRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWRE--KLNDDERHFIKHILGF 70 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GEL 145 FA S+ +V N+ ++ PE RQ+ Q F E++HS + +I +L DE EL Sbjct: 71 FAGSDGIVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDALISDEQERNEL 130 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 F+ +P++ KA WA ++ + + + V +V EG+ F F Sbjct: 131 FDAIENIPAVHNKAKWAQKWLE--------------PGKSFAERLVAWVCVEGILFSGSF 176 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 I L M G+ ++I RDE LH FG + ++++ + P + + ++ Sbjct: 177 CAIFWLRNKGVMPGLGLSNEFISRDEGLHQQFGELMYSKLQNKLP-------FETVKQII 229 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 EA E + + +P +G+N+ QY++F+A+R +G E ++ ++NPF +M E Sbjct: 230 TEAVENEKEFICDAIPCRLIGMNSELMGQYIEFVADRIFIALGYEKVYN-SKNPFAFM-E 287 Query: 326 VIDLKKEKNFFETRVTEYQQGAELK 350 +I L+ + NFFE RV++YQ+ +K Sbjct: 288 LISLQGKTNFFEKRVSDYQRPGVMK 312 >gi|325859841|ref|ZP_08172971.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella denticola CRIS 18C-A] gi|325482767|gb|EGC85770.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella denticola CRIS 18C-A] Length = 348 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 88/357 (24%), Positives = 156/357 (43%), Gaps = 15/357 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M N + + ++ KRM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 1 MDNKLKRNTLFNPSGDTDLRLKRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNL-PTVSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E +HS ++ Y++ ++ E R K + L + + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +I ++K E P ++T + + M+ E EIA+ + GLN Y++++ Sbjct: 231 SIILELKKEEPDMFTPDRIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290 Query: 300 ANRRCHQIGLEPLF-KYTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 N R +G L+ + P W+ + + + +FFE + T Y + L D Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALVDD 347 >gi|190572323|ref|YP_001970168.1| putative ribonucleotide diphosphate reductase, small chain [Stenotrophomonas maltophilia K279a] gi|190010245|emb|CAQ43853.1| putative ribonucleotide diphosphate reductase, small chain [Stenotrophomonas maltophilia K279a] Length = 339 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 102/337 (30%), Positives = 180/337 (53%), Gaps = 10/337 (2%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K+ML L P++Y ++ Y +A N W E+ Q D+ S ++ ER Sbjct: 5 PKQMLLDPGFELTLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHS--KMSPGERH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I R + FFA+ +S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + Sbjct: 63 LIHRLVAFFATGDSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLP 122 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F+ + SI KA++ ++ ++ S + T++ ++FL + F E Sbjct: 123 DPEERAKAFSAVENIDSIKKKADFCFKWIDSIQSLTRIE-TREQRRQFLLNQICFAACIE 181 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F+ FA + + G+A ++ RDES H+ F + + ++ E P L+ +E Sbjct: 182 GLFFFAAFAYVYYFRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDEEM 241 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +Q+ ML EA E+ +A + + G G++ QY+Q A++ ++G+E + Sbjct: 242 KQQVYDMLAEAIECEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYNVR- 300 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352 NP P+M E+ D+++ NFFE RV+ YQ G E+ +D Sbjct: 301 NPLPFM-ELQDVQELTNFFERRVSAYQVGVQGEVAFD 336 >gi|225568010|ref|ZP_03777035.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM 15053] gi|225163184|gb|EEG75803.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM 15053] Length = 355 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 153/348 (43%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ + Sbjct: 17 LFNPDGDTDVRSRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEISLGVDIKDY 76 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 L +ER + L F +S+ N+ I +++ E L Q F+EAVHS Sbjct: 77 ---PRLPAEERRAYDKILSFLIFLDSIQTANL-PHIGEYITANEINLCLSIQTFQEAVHS 132 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ Y++ ++ + RE K + L + + L Sbjct: 133 QSYSYMLDTICEPQK------REEILYQWKEDEHLLLRNEFIGSLYNEFQETKSARSLVR 186 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++ ++K E Sbjct: 187 TLIANYILEGVYFYSGFMFFYNLGRNQKMPGSVQEIRYINRDENTHLWLFRSMLQELKKE 246 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+ E + R M+ E EI + H + GL Y++++ N RC +G Sbjct: 247 EPQLFAAEDIKMYRQMIREGCEQEIRWGHYVIGDKIQGLTKDMITSYIRYLGNLRCTGLG 306 Query: 309 LEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 E +++ W+ + + + +FFE + T Y + + L D Sbjct: 307 FERIYEGYDTIPESMRWVEQYSNANLIKTDFFEAKSTAYAKSSALVDD 354 >gi|290343623|ref|YP_003494990.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1] gi|260161038|emb|CAY39739.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1] Length = 389 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 151/339 (44%), Gaps = 31/339 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V + + +L + + + PLKY WE Y A ++W EV + DL WK+ L + Sbjct: 69 VEEEYEPILASTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 125 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA S+ +V NI + E R + Q E VH T+ +I Sbjct: 126 NEQKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLID 185 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 D E F + VP I KA WA+++ D + + Sbjct: 186 KYIKDPSEKKELFEAIQTVPCIEKKAQWAMKW-------------FDTKSRSFAERLFAF 232 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F F I L + M G+ + I RDE LH F +++ ++ Sbjct: 233 ACVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLR------- 285 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + ++ EA +E + + +P +G+N+ +Y++++++R QIG+ ++ Sbjct: 286 NRPGVDTIHAIVREAVDIEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQIGVPTIW 345 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ++NPF +M E I L + NFFE RV +Y +L D Sbjct: 346 N-SKNPFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 379 >gi|322510876|gb|ADX06189.1| putative ribonucleotide reductase small subunit [Organic Lake phycodnavirus 2] Length = 324 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 91/328 (27%), Positives = 154/328 (46%), Gaps = 28/328 (8%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 + + +L + + P+ W+ Y + W P E+ D+ W N L DE+ Sbjct: 5 NTEPLLTEDDNRFVMFPVSDETIWKMYKKQVDCFWRPEEIDTSKDMTHW---NKLNTDEQ 61 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 IK L FFASS+ +V N+ L + E R + Q E +HS T+ +I S Sbjct: 62 YFIKMILAFFASSDGIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDSYI 121 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D E F+ P I K +WA+++ Q + V + Sbjct: 122 KDSDEKHKLFHSLEHFPCIKKKGDWAMKWIQD-------------KKSSFATRLVAFACV 168 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG++F F I L + M G+ + I RDE+LH F + + N+++ K Sbjct: 169 EGIFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEALHTEFAVYLYNRLEK-------KL 221 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++K R ++ EA +E + + +P +G+N+ QY++F+A+R Q+G + ++ T Sbjct: 222 NKKKVREIIEEAVTIEKEFIVDALPCRMIGMNSELMTQYIEFVADRLMMQLGCDVIY-AT 280 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 NPF +M E+I L+++ NFFE+RV+EY Sbjct: 281 NNPFDFM-ELISLEQKTNFFESRVSEYS 307 >gi|42523460|ref|NP_968840.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio bacteriovorus HD100] gi|39575666|emb|CAE79833.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio bacteriovorus HD100] Length = 336 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 102/324 (31%), Positives = 178/324 (54%), Gaps = 10/324 (3%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY +E Y + N W EV DL S +T+ E+ +I+R + FFA+ + Sbjct: 15 LRPMKYPIFYEMYKNGIKNTWTVDEVDFSTDLVDLHS--KMTESEKHLIRRLVAFFATGD 72 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 S+V NN+VL +Y+H+++PE R YL RQ +EEA+H + ++ + + E F Sbjct: 73 SIVGNNLVLNLYKHVNSPEGRMYLSRQLYEEALHVQFYLTLLDNYIPNPDERAEAFAAVE 132 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +PSI KA++ ++ +++ + T + + FL +L F EG++FY FA + Sbjct: 133 NIPSIKKKADFCYKWIDSINELT-ELNTIEDRRRFLMNLICFATCVEGLFFYAAFAYVYF 191 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + G+A ++ RDES+H+ F I+V+ + E P L+ ++ + ML +A Sbjct: 192 LRSKGLLAGLASGTNWVFRDESMHMAFAIEVVKTARKEEPELFNQQMEDMVVQMLEDAIE 251 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E+ +AH+ + G GL+A QY+++ A++R + + P + +NPF +M E+ D++ Sbjct: 252 CEMEFAHDVLNLGVAGLSAKDMRQYLEYCADQRLESLNIAPRYNV-KNPFIFM-ELQDMQ 309 Query: 331 KEKNFFETRVTEYQQG--AELKWD 352 + NFFE RV+ YQ G + +D Sbjct: 310 ELANFFERRVSAYQTGVSGAVAFD 333 >gi|328950373|ref|YP_004367708.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis DSM 14884] gi|328450697|gb|AEB11598.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis DSM 14884] Length = 332 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 117/328 (35%), Positives = 183/328 (55%), Gaps = 5/328 (1%) Query: 21 DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D R+ S + +L PL + WA+ +N W P EVP+ +D+ W LT++ER Sbjct: 4 DHRLFGPPSLEAIELFPLAHPWAYAHVQQGKHNTWFPEEVPLGEDVRDWHE--KLTEEER 61 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 LGFF ESLV N+VLAI+ ++ PE R YL RQ +EEA H+ F+Y++ +L Sbjct: 62 HAASLLLGFFNPMESLVTQNLVLAIFPYVRAPEARLYLARQIWEEANHTMAFEYVLKTLP 121 Query: 140 LDEGELFNMYREVPSITAKANWALQYTQ-TLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 +D ++F +REVP++ AK + TQ L T+ + L++L ++VV EG Sbjct: 122 VDREKVFAAHREVPAVRAKEAFQTALTQALLQQHPLDLETRSGQEALLKNLVGYFVVLEG 181 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++FY GF LS R N + G+ + ++DESLHL+FG+ +I E + T Sbjct: 182 IFFYAGFLLALSWRRRNLLKGLGAIIDWTLKDESLHLSFGLHLITGFLEEYSEVMTPRLA 241 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ R ++ EA LE AY +P+ +GL+A + Y++++A+RR ++GLE F T N Sbjct: 242 REVRGLILEAVQLERAYNQALLPRPILGLSAETLNAYVEYVADRRLEELGLEAAFG-TPN 300 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346 P WM+ +D+ + NFFE T Y+ G Sbjct: 301 PAKWMATEVDVPEIVNFFEAVNTSYEVG 328 >gi|269865926|ref|XP_002652096.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063168|gb|EED41960.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 330 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 89/328 (27%), Positives = 145/328 (44%), Gaps = 31/328 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEVYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E FN +PSI KA WA ++ A V + EG Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWI--------------ASDTSFDTRCVAFACVEG 188 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + I + Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNKCT-------- 240 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ EA +E + E++P +G+N QY++F+A+R +G + ++ + N Sbjct: 241 -VIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-N 298 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346 PF +M E I L+ + NFFE R YQ+G Sbjct: 299 PFDFM-ENISLQGKTNFFERREANYQKG 325 >gi|330994651|ref|ZP_08318574.1| putative ribonucleoside-diphosphate reductase small subunit [Gluconacetobacter sp. SXCC-1] gi|329758292|gb|EGG74813.1| putative ribonucleoside-diphosphate reductase small subunit [Gluconacetobacter sp. SXCC-1] Length = 365 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 89/352 (25%), Positives = 166/352 (47%), Gaps = 21/352 (5%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 ++T ++ A + ++ +L A P +Y WA++ +L+ HW+P EVP+ Sbjct: 28 DSTAMTDTAAPVAQPPMEQS-LLTANP---VYKPFRYPWAYDAWLTQQRVHWLPEEVPLA 83 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 DD+ W LT+ ER ++ + FF S+ V N + + E L + Sbjct: 84 DDVKDWH--RTLTESERHLVTQIFRFFTQSDVEVNNCYMKHYSQVFKPTEVLMMLSAFSN 141 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 E +H + +++ ++G+ E E ++ + + + K ++ Q + + Sbjct: 142 IETIHIAAYSHLLDTIGMPETE-YSAFLKYKEMKDKYDYMQQ------------FSVSDN 188 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 + + L F EG+ + FA +L+ R NK+ G+ + + +RDESLH + + Sbjct: 189 YQIARTLAAFGAFTEGLQLFASFAILLNFPRHNKLKGMGQIVSWSVRDESLHCDSMARLF 248 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIAN 301 ENP +WT + R + + E A+ + G V L+A ++Y++F+AN Sbjct: 249 RVFVQENPEIWTDTLRDDIRQICRDIVEHEDAFIDLSFEMGAVEGLDAGQVKRYIRFVAN 308 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 352 RR Q+GL+ ++ NP PW+ E+++ + NFFE R TEY + + WD Sbjct: 309 RRLGQLGLDGIYDIATNPLPWVDEMVNAVEHANFFENRATEYSRASTTGTWD 360 >gi|327312835|ref|YP_004328272.1| ribonucleoside-diphosphate reductase subunit beta [Prevotella denticola F0289] gi|326946303|gb|AEA22188.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella denticola F0289] Length = 348 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 87/357 (24%), Positives = 156/357 (43%), Gaps = 15/357 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M N + + ++ +RM+ + ++N +KY W + Y A NN W+P E+ Sbjct: 1 MDNKLKRNTLFNPSGDTDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +K L ER + L F +SL +NN+ + +++ E L Sbjct: 61 NLSQD---FKDYPRLDKAERTAYDKILSFLVFLDSLQSNNL-PTVSEYITANEVNLCLHI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 QAF+E +HS ++ Y++ ++ E R K + L + + Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +I ++K E P ++T + + M+ E EIA+ + GLN Y++++ Sbjct: 231 SIILELKKEEPDMFTSDKIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290 Query: 300 ANRRCHQIGLEPLF-KYTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 N R +G L+ + P W+ + + + +FFE + T Y + L D Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALVDD 347 >gi|225712968|gb|ACO12330.1| Ribonucleoside-diphosphate reductase small chain [Lepeophtheirus salmonis] Length = 335 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 82/331 (24%), Positives = 143/331 (43%), Gaps = 29/331 (8%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ +L + + P+ Y W Y A W EV + DL W L D Sbjct: 12 QEKNEIILTPNNSKYVMFPIVYKDIWFMYKKALATFWTVEEVDLSKDLMDWA---KLNKD 68 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ I L FFA+S+ +V N++ + E R + Q E +HS + +I + Sbjct: 69 EKHFISNVLAFFAASDGIVNENLLERFASEVQIAEARSFYGFQIMIENIHSEMYSLLIDT 128 Query: 138 LGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D+ E FN + + KA WAL++ + V + Sbjct: 129 YIEDDKEKDKLFNSILTIECVKKKAEWALRWI--------------TGDKPFATRLVAFA 174 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EG++F FA + L + M G+ + I RDE H +F + + HL Sbjct: 175 AVEGIFFSGSFASLFWLKKRGLMPGLTFSNELISRDEGSHTDFACLLYS-------HLEN 227 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 K + ++ E +E + +++P G +G+NA + Y++F+A+ + +E + Sbjct: 228 KLDPKYVLQIIKEGVEIEKEFVADSLPVGLIGMNAKMMKNYIEFVADNLLENLNIEKYY- 286 Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +T+NPF +M I + + NFF+ RV+EYQ+ Sbjct: 287 HTKNPFNFMDN-ISMTGKTNFFDKRVSEYQR 316 >gi|322378346|ref|ZP_08052803.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS1] gi|322379688|ref|ZP_08054002.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS5] gi|321147887|gb|EFX42473.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS5] gi|321149232|gb|EFX43675.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter suis HS1] Length = 342 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 88/347 (25%), Positives = 168/347 (48%), Gaps = 14/347 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 ++ I + + V D+++ + + L +KY WA + + + N W P EV M Sbjct: 2 DHLSRKKIYNPQSQEQVSDRQIFGGNPTSMFDLNKIKYPWASKLWKTMLTNTWFPEEVSM 61 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + L+ E++ R L +SL NN++ I +++PE L+RQA Sbjct: 62 HGDKNHY---LHLSPQEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQA 118 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 +EEA+HSH++ ++ S+ + ++ M+R ++ K + Q LS+ + Sbjct: 119 YEEALHSHSYAVMVESISANSDSIYEMWRTDVALKNKNDCIAQIYMELSN--------NP 170 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 + L + EG++FY+GF+ +L R+ +M+G A+ ++I RDE HL+ ++ Sbjct: 171 TEYNLLKALFANQILEGIYFYSGFSFFYALARSGRMLGSAQMIRFIQRDELTHLHLFQNM 230 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 IN ++ E L++ E + M +A LE A+ + L+ Y +++A+ Sbjct: 231 INTLRKERSDLFSPELIAEVNEMFKQAVDLESAWGAYITQGEMLDLSPQILRTYTEYLAD 290 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGA 347 R +GL L+ ++NP W+ + + NFFE +V+ Y +G+ Sbjct: 291 TRLAVVGLPKLYN-SQNPIKWVDQFANFNSHRSNFFEAKVSNYSKGS 336 >gi|255008714|ref|ZP_05280840.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis 3_1_12] gi|313146449|ref|ZP_07808642.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis 3_1_12] gi|313135216|gb|EFR52576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides fragilis 3_1_12] Length = 349 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 156/350 (44%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + E + ++M+ + ++N + Y W + Y A NN W+P E+ + D Sbjct: 9 NALFNPEGDTELRLRKMIGGNTTNLNDFNNMHYKWVSDWYRQAMNNFWIPEEINLTQDTK 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER + L F +SL +NN+ I +++ E L QAF+E V Sbjct: 69 DY---PHLDKAERTAYDKILSFLVFLDSLQSNNL-PTISEYITANEVNLCLHIQAFQECV 124 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ E R K + L T + + D L Sbjct: 125 HSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLKRNTFIGNCYNEFQESQDSFTL 178 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K Sbjct: 179 MKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELK 238 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + + M+ E EI + + GLN E Y+ ++ N R Sbjct: 239 KEEPELFTSDRVKVYEAMMREGVKQEIEWGQYVIGDEIQGLNKKMIEDYIHYLGNLRWTS 298 Query: 307 IGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G PL++ + P W+S+ + + +FFE + T Y + L+ D Sbjct: 299 LGFTPLYEDNLKEPESMRWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348 >gi|254521240|ref|ZP_05133295.1| ribonucleoside-diphosphate reductase, beta subunit [Stenotrophomonas sp. SKA14] gi|219718831|gb|EED37356.1| ribonucleoside-diphosphate reductase, beta subunit [Stenotrophomonas sp. SKA14] Length = 339 Score = 281 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 101/337 (29%), Positives = 175/337 (51%), Gaps = 10/337 (2%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K+ML L P++Y ++ Y +A N W E+ Q D+ S ++ ER Sbjct: 5 PKQMLLDPGFELTLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHS--KMSPGERH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I R + FFA+ +S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + Sbjct: 63 LIHRLVAFFATGDSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLP 122 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F + SI KA++ ++ ++ T+ ++FL + F E Sbjct: 123 DPEERVKAFAAVENIDSIKKKADFCFKWIDSIQDLKRIE-TRAERRQFLLNQICFAACIE 181 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F+ FA + + G+A ++ RDES H+ F + + ++ E P L+ E Sbjct: 182 GLFFFAAFAYVYYFRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDDEM 241 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +Q+ ML EA E+ +A + + G G++ QY+Q A++ ++G+E + Sbjct: 242 KQQVYDMLAEAIECEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYNVR- 300 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352 NP P+M E+ D+++ NFFE RV+ YQ G E+ +D Sbjct: 301 NPLPFM-ELQDVQELTNFFERRVSAYQVGVQGEVAFD 336 >gi|269863618|ref|XP_002651286.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064807|gb|EED42770.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 332 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 89/328 (27%), Positives = 145/328 (44%), Gaps = 31/328 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E FN +PSI KA WA ++ A V + EG Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWI--------------ASDTSFDTRCVAFACVEG 188 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + I + Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNKCT-------- 240 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ EA +E + E++P +G+N QY++F+A+R +G + ++ + N Sbjct: 241 -VIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-N 298 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346 PF +M E I L+ + NFFE R YQ+G Sbjct: 299 PFDFM-ENISLQGKTNFFERREANYQKG 325 >gi|209877302|ref|XP_002140093.1| ribonucleotide-diphosphate reductase, small subunit [Cryptosporidium muris RN66] gi|209555699|gb|EEA05744.1| ribonucleotide-diphosphate reductase, small subunit, putative [Cryptosporidium muris RN66] Length = 346 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 82/332 (24%), Positives = 152/332 (45%), Gaps = 29/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L++ + ++Q++ + W Y + W E+ + D+ W+S L + E+ Sbjct: 27 EEPVLSSDTRLHQIIKSEIEVMWSMYKKEEASFWTAEEIDLGQDMRDWES---LKEPEKH 83 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG- 139 IK L FFA+S+ +V N+ + + + E R Y Q E +HS T+ +I Sbjct: 84 FIKYVLAFFAASDGIVMENLAVNFLKEIQIEEARMYYGFQIAMEQIHSETYSLLIDQYIS 143 Query: 140 --LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D LF +P++ KA WA ++ + + + + E Sbjct: 144 DVKDRQMLFEAISHLPAVKTKAKWATKWMN--------------NNRSFAERIIGFCAVE 189 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G+ F F I L + M G+ + I RDE +H +FG + + P+ Sbjct: 190 GILFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGIHADFGCLLYKTLNNRLPYG----- 244 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + ++ EA +E A+ +++P +G+N+ QY++F+A+R + + ++ T Sbjct: 245 --RVQEIIAEAVEVERAFLCDSLPVDLIGMNSRLMAQYIEFVADRLLFALDVPKIYNVT- 301 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF WM +I L+ + NFFE RV EYQ + Sbjct: 302 NPFDWMD-LISLQGKTNFFEKRVAEYQMAGVM 332 >gi|293401949|ref|ZP_06646089.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304607|gb|EFE45856.1| ribonucleoside-diphosphate reductase, beta subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 347 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 85/350 (24%), Positives = 156/350 (44%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ +V ++RM+N + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KPLFNEHGDCDVINRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDVK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L+ E+ + L F +S+ N+ + +++ E L QAF+EA+ Sbjct: 67 DYR---RLSQAEKNAYDKTLSFLIFLDSIQTANL-PNVGDYITANEVNLCLTIQAFQEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ + R K + L + D L Sbjct: 123 HSQSYSYMLDSICSSQE------RNDILYQWKNDARLLERNKFIGDLYNDFITHHDGIHL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +++ Sbjct: 177 MKTMMANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILELQ 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T ++ + ML EI + + GL +Y+ ++ N R Sbjct: 237 KEEPQLFTPALVEEYKDMLRYGVEEEIRWGSYVIGNDIEGLTMQMVREYIYYLGNLRSTS 296 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G L++ Y + P W+S + + +FFE R + Y + + L D Sbjct: 297 LGFGTLYEGYEKEPASMEWVSMYANANLIKTDFFEARSSAYAKSSALVDD 346 >gi|155370749|ref|YP_001426283.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella virus FR483] gi|155124069|gb|ABT15936.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella virus FR483] Length = 348 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 94/319 (29%), Positives = 152/319 (47%), Gaps = 28/319 (8%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P+KY + Y A + W EVP+ D+A W+ L DDER IK LGFFA S+ Sbjct: 43 FPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRD--KLNDDERHFIKTILGFFAGSDG 100 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYRE 151 +V NI +++P R + Q F E++HS + ++ +L D+ E F+ Sbjct: 101 MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAERNSLFDAIET 160 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 +P++ KA WA ++ + + + V +V EG+ F F I L Sbjct: 161 IPAVGKKAAWAQKF--------------LSQDKSFAERLVAWVCVEGLLFSGSFCAIFWL 206 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 M G+ ++I RDE LH FG + ++ L K + + ++ EA Sbjct: 207 RNRGVMPGLGLSNEFISRDEGLHQQFGELLYSK-------LENKLSLAQVKAIVEEAVAN 259 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E + E +P +G+N+ QY++F+A+R +G + T NPF +M E+I L+ Sbjct: 260 EKEFICEAIPCRMIGMNSELMGQYLEFVADRIFVALGHPKQYNAT-NPFDFM-ELISLEG 317 Query: 332 EKNFFETRVTEYQQGAELK 350 + NFFE RV+EYQ+ + Sbjct: 318 KSNFFERRVSEYQRPGVMN 336 >gi|163955147|ref|YP_001648251.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5] gi|163638596|gb|ABY27955.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5] Length = 322 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 150/339 (44%), Gaps = 31/339 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V + +L + + + PLKY WE Y A ++W EV + DL WK+ L + Sbjct: 2 VEEEYDPILASTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 58 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +E+ IK L FFA S+ +V NI + E R + Q E VH T+ +I Sbjct: 59 NEQKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLID 118 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 D E F + VP I KA WA+++ D + + Sbjct: 119 KYIKDPSEKKELFEAIQTVPCIEKKAQWAMKW-------------FDTKSRSFAERLFAF 165 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F F I L + M G+ + I RDE LH F +++ ++ Sbjct: 166 ACVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLR------- 218 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + ++ EA +E + + +P +G+N+ +Y++++++R QIG+ ++ Sbjct: 219 NRPGVDTIHAIVREAVEIEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQIGVPTIW 278 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 ++NPF +M E I L + NFFE RV +Y +L D Sbjct: 279 N-SKNPFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 312 >gi|155370982|ref|YP_001426516.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella virus 1] gi|155124302|gb|ABT16169.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella virus 1] Length = 325 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 93/321 (28%), Positives = 149/321 (46%), Gaps = 28/321 (8%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++Y ++ Y A W EV + D+ W+ L DDER IK LGFFA S+ Sbjct: 20 FPIRYPDIFQMYKKAVATFWTVEEVQLNQDVVDWRE--KLNDDERHFIKHILGFFAGSDG 77 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYRE 151 +V N+ +++P R + Q + E+VHS + ++ +L DE E F Sbjct: 78 MVMENLNNNFAEEVTDPSARMFYAYQGYNESVHSEQYSLLLDALIEDETERNKLFEAIET 137 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 +P++ KA WA +Y + + V +V EG+ F F I L Sbjct: 138 IPAVGKKAAWASKYF--------------SRDRSFAERLVAWVCVEGLLFSGSFCAIFWL 183 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 M G+ ++I RDE LH FG + ++ L K ++++ EA Sbjct: 184 RNRGLMPGLGLSNEFISRDEGLHQQFGELLYSK-------LENKLSLDVVKSIVEEAVAN 236 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E + + +P +G+N+ QY++F+A+R +G F ENPF +M E+I L+ Sbjct: 237 EKDFICDAIPCRMIGMNSDLMSQYIEFVADRIFTALGYPKQFG-AENPFDFM-ELISLEG 294 Query: 332 EKNFFETRVTEYQQGAELKWD 352 + NFFE RV+EYQ+ + D Sbjct: 295 KSNFFERRVSEYQKAGVMNAD 315 >gi|303389600|ref|XP_003073032.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon intestinalis ATCC 50506] gi|303302176|gb|ADM11672.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon intestinalis ATCC 50506] Length = 326 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 81/328 (24%), Positives = 151/328 (46%), Gaps = 29/328 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + + L P+++ W Y A ++ W EV + D+ WK L E+ Sbjct: 8 EPLLDPKEERFVLFPIQHEDVWRMYKKAESSFWTVEEVLLDKDIEDWK---KLNPKEKHF 64 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+V + E + + Q E +HS + +I + D Sbjct: 65 ISNVLAFFAASDGIVNLNLVERFSSEVKMLEAKLFYGFQIAIENIHSEMYSLLIDTYVRD 124 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + FN + +PS+ KA+WA+++ + +S V + EG Sbjct: 125 GEQKKFLFNAVKTIPSVKDKADWAIKWIEDKNSD-------------FATRLVAFACVEG 171 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH F + + K+ Sbjct: 172 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLHRRYL--------KQKC 223 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ + ++ +A +E + E++P +G+N +Y++F+A+ + E ++ +T N Sbjct: 224 KRVKEVVMDAVEVEKRFLSESLPVDLIGMNCQLMCKYIEFVADTLLENLEEEKIY-HTPN 282 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346 PF +M E I L + NFF+ R ++YQ+ Sbjct: 283 PFDFM-ENISLVGKTNFFDKRESQYQKA 309 >gi|315635423|ref|ZP_07890689.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter butzleri JV22] gi|315480181|gb|EFU70848.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter butzleri JV22] Length = 339 Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 168/343 (48%), Gaps = 15/343 (4%) Query: 12 AGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + + +++D+R+ SD + +KY WA + + N W P EV M D +K Sbjct: 8 NPDSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTGDAKDYK- 66 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 LT E+ M L +SL NN++ I +++ PE L RQ++EEA HS + Sbjct: 67 --FLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYEEANHSKS 124 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 + ++ S+ + +++M++ + K + + + LS D D + Sbjct: 125 YAVMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLSG--------DIDDRKIVLAL 176 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 + EG++FY GFA I +LG++ KM+G ++ ++I RDE HL ++IN ++ E P Sbjct: 177 FANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQNMINSVRKERP 236 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 L+T+E ++ R M +A LE ++ +G QY++++A+RR +G + Sbjct: 237 DLFTQELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYLADRRLEAVGYK 296 Query: 311 PLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 + ++P PW+ + NFFE V Y +G+ + +D Sbjct: 297 AEYGV-KHPIPWVDGYASFNDQRTNFFEGNVVNYSKGS-IDFD 337 >gi|169824933|ref|YP_001692544.1| ribonucleotide-diphosphate reductase subunit beta [Finegoldia magna ATCC 29328] gi|167831738|dbj|BAG08654.1| ribonucleoside-diphosphate reductase beta subunit [Finegoldia magna ATCC 29328] Length = 354 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 163/348 (46%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ + Sbjct: 16 LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 75 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L++DE++ + L F +SL + + +++ E L QAF+E++HS Sbjct: 76 RN---LSEDEKIAYDKILSFLIYLDSLQTAQL-PNLEAYITANEINLCLSIQAFQESIHS 131 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ YI+ ++ E R K + L + + + Sbjct: 132 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMK 185 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K E Sbjct: 186 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 245 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+T+E + + M+ + EI +A + + GL+ E Y++++ N R +G Sbjct: 246 RPELFTEEKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 305 Query: 309 LEPLFKY--TENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 ++ E P W+SE D K + +FFE + + Y + A ++ D Sbjct: 306 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 353 >gi|326403282|ref|YP_004283363.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium multivorum AIU301] gi|325050143|dbj|BAJ80481.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium multivorum AIU301] Length = 338 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 92/341 (26%), Positives = 160/341 (46%), Gaps = 17/341 (4%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + V+ + ++ P +Y WA+E +L+ HW+P EVP+ DD+ W Sbjct: 9 AAPIPVETPAHFDLLTENPVYKPFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWH--RN 66 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT ER ++ + FF ++ V N + + E L + E +H + + Sbjct: 67 LTPGERNLLTQIFRFFTQADVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSH 126 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ ++G+ E E ++ + + + K ++ + D+ E + L F Sbjct: 127 LLDTIGMPEVE-YSAFLKYKEMKDKYDYM------------QEFSVDSKHEIAKTLAAFG 173 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG+ + FA +L+ R NKM G+ + + +RDESLH N I + ENP +W Sbjct: 174 AFTEGLQLFASFAILLNFPRFNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIW 233 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPL 312 T+E +++ E A+ G V L A ++Y+++IA+RR Q+GL PL Sbjct: 234 TEELRREIYLCCATIVDHEDAFIDLAFEFGAVEGLTAEEVKRYIRYIADRRLLQLGLNPL 293 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352 F +NP PW+ E+++ + NFFE R TEY + + WD Sbjct: 294 FHVDKNPLPWLDEMLNAVEHTNFFENRATEYSKASTAGSWD 334 >gi|297587320|ref|ZP_06945965.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna ATCC 53516] gi|297575301|gb|EFH94020.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna ATCC 53516] Length = 354 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 165/348 (47%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ + Sbjct: 16 LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 75 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L++DE++ + L F +SL + + +++ E L QAF+E++HS Sbjct: 76 RN---LSEDEKIAYDKILSFLIYLDSLQTAQL-PNLEAYITANEINLCLSIQAFQESIHS 131 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ YI+ ++ E R K + L + ++ + Sbjct: 132 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEEKSERNFMK 185 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K E Sbjct: 186 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 245 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+T+E + + M+ + + EI +A + + GL+ E Y++++ N R +G Sbjct: 246 RPELFTEEKNAQYKEMIKQGSEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 305 Query: 309 LEPLFKY--TENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 ++ E P W+SE D K + +FFE + + Y + A ++ D Sbjct: 306 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 353 >gi|148259750|ref|YP_001233877.1| ribonucleotide-diphosphate reductase subunit beta [Acidiphilium cryptum JF-5] gi|146401431|gb|ABQ29958.1| Ribonucleoside-diphosphate reductase [Acidiphilium cryptum JF-5] Length = 338 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 92/341 (26%), Positives = 160/341 (46%), Gaps = 17/341 (4%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + V+ + ++ P +Y WA+E +L+ HW+P EVP+ DD+ W Sbjct: 9 AAPIPVETPAHFDLLTENPVYKPFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWH--RN 66 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 LT ER ++ + FF ++ V N + + E L + E +H + + Sbjct: 67 LTPGERNLLTQIFRFFTQADVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSH 126 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ ++G+ E E ++ + + + K ++ + D+ E + L F Sbjct: 127 LLDTIGMPEVE-YSAFLKYKEMKDKYDYM------------QEFSVDSKHEIAKTLAAFG 173 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG+ + FA +L+ R NKM G+ + + +RDESLH N I + ENP +W Sbjct: 174 AFTEGLQLFASFAILLNFPRFNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIW 233 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPL 312 T+E +++ E A+ G V L A ++Y+++IA+RR Q+GL PL Sbjct: 234 TEELRREIYLCCATIVDHEDAFIDLAFEFGAVEGLTAEEVKRYIRYIADRRLLQLGLNPL 293 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352 F +NP PW+ E+++ + NFFE R TEY + + WD Sbjct: 294 FHVDKNPLPWLDEMLNAVEHTNFFENRATEYSKASTAGSWD 334 >gi|162147608|ref|YP_001602069.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|209542240|ref|YP_002274469.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|161786185|emb|CAP55767.1| putative ribonucleotide reductase small subunit [Gluconacetobacter diazotrophicus PAl 5] gi|209529917|gb|ACI49854.1| Ribonucleoside-diphosphate reductase [Gluconacetobacter diazotrophicus PAl 5] Length = 353 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 86/354 (24%), Positives = 160/354 (45%), Gaps = 20/354 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + N TG +P A + +L + P +Y WA++ +L+ HW+P EVP Sbjct: 4 ITNATGTAPESAPQPTGVEARLDLLTSNP---IYKPFRYPWAYDAWLTQQRVHWLPEEVP 60 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + DD+ W LT+ E+ ++ + FF S+ V N + R E L Sbjct: 61 LADDVKDWH--RTLTESEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAF 118 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 + E +H + +++ ++G+ E E ++ + + + K ++ + D Sbjct: 119 SNIETIHIAAYSHLLDTIGMPEME-YSAFLKYKEMKDKYDYM------------QGFSVD 165 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 + E + L F EG+ + FA +L+ R NK+ G+ + + +RDE+LH Sbjct: 166 SKPEIARTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETLHCLSMAR 225 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFI 299 + ENP +WT + + + E A+ G V L+ + Y++FI Sbjct: 226 LFRVFIQENPEIWTDALRADIVQICRDIVEHEDAFIDLCFEMGPVEGLDGDLVKTYIRFI 285 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 352 A+RR + +GL+ ++ NP PW+ ++++ + NFFE R TEY + + W+ Sbjct: 286 ADRRLNLLGLDGIYDVPSNPLPWVDDMLNAVEHTNFFENRSTEYSRASTTGSWE 339 >gi|289177076|ref|NP_001165949.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 3 [Homo sapiens] gi|55631160|ref|XP_528204.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B isoform 3 [Pan troglodytes] gi|42794058|dbj|BAD11774.1| p53-inducible ribonucleotide reductase small subunit 2 long form [Homo sapiens] gi|119612246|gb|EAW91840.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_a [Homo sapiens] Length = 299 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 88/296 (29%), Positives = 142/296 (47%), Gaps = 28/296 (9%) Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Sbjct: 15 DEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCF 71 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173 Q E VHS + +I + D + FN +P + KA+WAL++ Sbjct: 72 YGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD----- 126 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 + + V + EG++F FA I L + M G+ + I RDE L Sbjct: 127 --------RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 178 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293 H +F + L K +++ R ++ +A +E + E +P G +G+N + Sbjct: 179 HCDFACLMFQY-------LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMK 231 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 232 QYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 285 >gi|302379704|ref|ZP_07268189.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna ACS-171-V-Col3] gi|302312611|gb|EFK94607.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna ACS-171-V-Col3] Length = 347 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 163/348 (46%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + + +R++N + ++N +KY W E Y A NN W+P E+ + D+ + Sbjct: 9 LFNEHGDIELSKRRIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L++DE++ + L F +SL + + +++ E L QAF+E++HS Sbjct: 69 RN---LSEDEKIAYDKILSFLIYLDSLQTAQL-PNLEAYITANEINLCLSIQAFQESIHS 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ YI+ ++ E R K + L + + + Sbjct: 125 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMK 178 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K E Sbjct: 179 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 238 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+T+E + + M+ + EI +A + + GL+ E Y++++ N R +G Sbjct: 239 RPELFTEEKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 298 Query: 309 LEPLFKY--TENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 ++ E P W+SE D K + +FFE + + Y + A ++ D Sbjct: 299 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 346 >gi|306819883|ref|ZP_07453537.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552130|gb|EFM40067.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 347 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 164/350 (46%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + ++ ++M+N + ++N +KY W + Y A NN W+P E+ + D+ Sbjct: 7 KQLFNENGDIELNKRKMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLTQDIK 66 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ L+ +E+ + L F +S+ N+ I +++ E L QA++EA+ Sbjct: 67 DYR---KLSKEEKNAYDKILSFLVFLDSIQTANL-PNIGEYITANEVNLCLTIQAYQEAI 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ YI+ ++ E R K + L + D L Sbjct: 123 HSQSYGYILDTICSPEE------RTNILYQWKDDELLLARNKFIGDLYNEFYYDRSDFNL 176 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++FY+GF SLGR KM G ++ +YI RDE+ HL ++ ++K Sbjct: 177 VKTAVANYILEGIYFYSGFMFFYSLGRIGKMPGTVQEIRYINRDENTHLWLFRSILLELK 236 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E H++T+E R M+ + EI +A + GL+ E Y++++ N RC Sbjct: 237 KEEAHIFTQENINLFRNMIKQGVEEEIRWAKYAIGDNIQGLSMSMIEDYLKYLGNLRCKG 296 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G + +++ Y + P W+SE D + +FFE +V+ Y + ++ D Sbjct: 297 LGFDNIYEGYEKEPESMSWVSEYSDPNAIKTDFFEAKVSAYAKSTVIEDD 346 >gi|157736292|ref|YP_001488975.1| ribonucleotide-diphosphate reductase subunit beta [Arcobacter butzleri RM4018] gi|157698146|gb|ABV66306.1| ribonucleoside-diphosphate reductase, beta chain [Arcobacter butzleri RM4018] Length = 339 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 167/343 (48%), Gaps = 15/343 (4%) Query: 12 AGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + + +++D+R+ SD + +KY WA + + N W P EV M D +K Sbjct: 8 NPDSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTGDAKDYK- 66 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 LT E+ M L +SL NN++ I +++ PE L RQ++EEA HS + Sbjct: 67 --FLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYEEANHSKS 124 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 + ++ S+ + +++M++ + K + + + LS D D + Sbjct: 125 YAVMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLSG--------DIDDRKIVLAL 176 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 + EG++FY GFA I +LG++ KM+G ++ ++I RDE HL ++IN ++ E P Sbjct: 177 FANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQNMINSVRKERP 236 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 L+T E ++ R M +A LE ++ +G QY++++A+RR +G + Sbjct: 237 DLFTSELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYLADRRLEAVGYK 296 Query: 311 PLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 + ++P PW+ + NFFE V Y +G+ + +D Sbjct: 297 AEYGV-KHPIPWVDGYASFNDQRTNFFEGNVVNYSKGS-IDFD 337 >gi|27769295|gb|AAH42468.1| Similar to ribonucleotide reductase M2 polypeptide [Homo sapiens] Length = 285 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 88/296 (29%), Positives = 142/296 (47%), Gaps = 28/296 (9%) Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Sbjct: 1 EEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCF 57 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173 Q E VHS + +I + D + FN +P + KA+WAL++ Sbjct: 58 YGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD----- 112 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 + + V + EG++F FA I L + M G+ + I RDE L Sbjct: 113 --------RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 164 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293 H +F + L K +++ R ++ +A +E + E +P G +G+N + Sbjct: 165 HCDFACLMFQY-------LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMK 217 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 218 QYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 271 >gi|155122339|gb|ABT14207.1| hypothetical protein MT325_M653L [Paramecium bursaria chlorella virus MT325] Length = 326 Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 94/319 (29%), Positives = 152/319 (47%), Gaps = 28/319 (8%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P+KY + Y A + W EVP+ D+A W+ L DDER IK LGFFA S+ Sbjct: 21 FPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWRD--KLNDDERHFIKTILGFFAGSDG 78 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYRE 151 +V NI +++P R + Q F E++HS + ++ +L D+ E F+ Sbjct: 79 MVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDALIEDDAERNSLFDAIET 138 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 +P++ KA WA ++ + + + V +V EG+ F F I L Sbjct: 139 IPAVGKKAAWAQKF--------------LSQDKSFAERLVAWVCVEGLLFSGSFCAIFWL 184 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 M G+ ++I RDE LH FG + ++ L K + + ++ EA Sbjct: 185 RNRGVMPGLGLSNEFISRDEGLHQQFGELLYSK-------LENKLSLAQVKAIVEEAVAN 237 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 E + E +P +G+N+ QY++F+A+R +G + T NPF +M E+I L+ Sbjct: 238 EKEFICEAIPCRMIGMNSELMGQYLEFVADRIFVALGHPKQYNAT-NPFDFM-ELISLEG 295 Query: 332 EKNFFETRVTEYQQGAELK 350 + NFFE RV+EYQ+ + Sbjct: 296 KSNFFERRVSEYQRPGVMN 314 >gi|153875510|ref|ZP_02003277.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp. PS] gi|152068026|gb|EDN66723.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp. PS] Length = 374 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 142/354 (40%), Positives = 219/354 (61%), Gaps = 8/354 (2%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 ++ L I G KR + D +++ R DV Q +P+KY E++L+A N W+P E+PM Sbjct: 24 SSSLDAISIGTKRPSSSDIKIIGGRGYDVRQPIPVKYTSVRERFLNARKNFWIPNEIPMG 83 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 +D W + LT+ E + K N+ + +S++LV +N+ AI +H++ E RQY Q Sbjct: 84 EDKLQWNT-GLLTEAEMWLFKSNISYLTASDNLVPDNLDNAILKHITANEMRQYFRHQIM 142 Query: 123 EEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 EE+ H ++ +I+ S GLDE G++FN+Y+EVP++T K NW L +T + + GT Sbjct: 143 EESNHIESYLFILESFGLDEKGQGQIFNLYQEVPALTEKLNWNLTFTNNVVNSEAPRGTL 202 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 +A++ L+DL +Y +FE ++F GF+QI +L R K+ A+QY YI RDE+LH + G+ Sbjct: 203 EANRALLEDLISYY-IFEYLFFPLGFSQIFALARKGKLRNTAQQYSYIWRDENLHSSNGL 261 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQF 298 +I QI EN LW Q++SR ++ EA LE YAH +MP+ G VGL + ++ F Sbjct: 262 WLIKQIIQENHELWDSTMQERSRAIVSEAVKLETDYAHASMPEGGIVGLPVKTYIKFSHF 321 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +A+ C +G++PLF+ E+P PW+SE +L E NFFE RV EYQ G++L WD Sbjct: 322 VADNICKNLGIKPLFRVREHPMPWISEY-ELNHEVNFFEGRVREYQTGSQLTWD 374 >gi|303234233|ref|ZP_07320879.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna BVS033A4] gi|302494774|gb|EFL54534.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia magna BVS033A4] Length = 347 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 85/348 (24%), Positives = 163/348 (46%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ + Sbjct: 9 LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L++DE++ + L F +SL + + +++ E L QAF+E++HS Sbjct: 69 RN---LSEDEKIAYDKILSFLIYLDSLQTAQL-PNLEAYITANEINLCLSIQAFQESIHS 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ YI+ ++ E R K + L + + + Sbjct: 125 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMK 178 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K E Sbjct: 179 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 238 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+T+E + + M+ + EI +A + + GL+ E Y++++ N R +G Sbjct: 239 RPELFTEEKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 298 Query: 309 LEPLFKY--TENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 ++ E P W+SE D K + +FFE + + Y + A ++ D Sbjct: 299 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 346 >gi|317011285|gb|ADU85032.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori SouthAfrica7] Length = 341 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 89/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ ++ + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEKNI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E ++ +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLIDEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKIYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|62866936|gb|AAY17359.1| ribonucleotide reductase small subunit [Haemonchus contortus] Length = 374 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 23/334 (6%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +++ +L + + PLKY W Y A + W EV + D+A W+ +TD+ER Sbjct: 48 EEEPLLRENPNRFVIFPLKYHDIWAFYKKAVASFWTVEEVDLAKDMADWE---KMTDNER 104 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I R L FFA+S+ +V N+V + + PE R + Q E +HS + +I + Sbjct: 105 FFISRVLAFFAASDGIVNENLVERFSKEVQVPEARFFYGSQIAIENIHSEMYSKLIETYI 164 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 DE E FN EVP I KA WA++ + F + + + Sbjct: 165 RDEKERNILFNAIFEVPCIAKKAEWAVKMGLQTITAPF------------AERVIAFAAV 212 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 G F G I G K G + + + + + G+ I+ + H+ K Sbjct: 213 GGNIFSLGPVAIPFSGLKKK--GDWRGWSHSILRSLIQGDEGVHAISHVCCIQ-HIKNKL 269 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q++ ++ +A +E + E++P +G+N QY++++A+ ++G E + K + Sbjct: 270 SQERIYYIIRDAVAIEQEFLSESLPVDMIGMNCRLMCQYIEYVADHLLVELGCEKICK-S 328 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +NPF +M E I + + NFFE +V+EYQ+ L Sbjct: 329 KNPFDFM-ENISIDGKTNFFEKKVSEYQRPGVLS 361 >gi|66475262|ref|XP_627447.1| ribonucleotide reductase small subunit, duplicated adjacent gene [Cryptosporidium parvum Iowa II] gi|9652154|gb|AAF91416.1|AF275635_1 ribonucleotide reductase R2 subunit [Cryptosporidium parvum] gi|46228920|gb|EAK89769.1| ribonucleotide reductase small subunit, duplicated adjacent gene [Cryptosporidium parvum Iowa II] Length = 352 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 88/351 (25%), Positives = 155/351 (44%), Gaps = 30/351 (8%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + + + K V++ + +R + N+L L W Y A + W+ E+ + Sbjct: 15 KDEENIEKLVNEVKINQVNEPMLKYSRENRNELKELI-KDIWSMYKKAEASFWVTEEIDL 73 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D W+S L D ER IK L FFA+S+ +V N+ + R + PE R Y Q Sbjct: 74 SQDTRDWES---LKDPERHFIKYVLAFFAASDGIVMENLAVNFLREIQIPEARMYYAFQM 130 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS T+ +I + E F + ++ KA WA ++ + Sbjct: 131 SIEQIHSETYSLLIDRYITEIKERQMLFEAISHIEAVKKKAEWATKWMNS---------- 180 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + + + + EG+ F F I L + M G+ + I RDE LH +F Sbjct: 181 ----ERSFAERIIGFCAVEGILFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHADFA 236 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + +K + P + + ++ EA +E + +++P +G+N+ QY++F Sbjct: 237 CLIYKALKFKLPAP-------RVQQIISEAVEVERNFLCDSLPVDLIGMNSRLMAQYIEF 289 Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +A+R + + ++ + NPF WM +I L+ + NFFE RV EYQ + Sbjct: 290 VADRLLFALDIPKIYNVS-NPFDWMD-LISLQGKTNFFEKRVGEYQMAGVM 338 >gi|47213103|emb|CAF89523.1| unnamed protein product [Tetraodon nigroviridis] Length = 407 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 83/299 (27%), Positives = 129/299 (43%), Gaps = 43/299 (14%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ +V + DL W+S L DDER I L FFA+S+ +V N+V + + E Sbjct: 135 WL--QVDLSKDLQHWES---LKDDERFFISHVLAFFAASDGIVNENLVERFTQEVQVTEA 189 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLS 170 R + Q E +HS + +I + + E FN +P + KA+WAL + Sbjct: 190 RCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIETLPCVKKKADWALNWIGNQ- 248 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + + V + EG++F FA I L + M G+ + I RD Sbjct: 249 ------------KASYGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRD 296 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E LH +F + HL K Q ++ A +E + E +P +G+N Sbjct: 297 EGLHCDFACLMFK-------HLLHKPSAQTVGAIIRNAVEIEQEFLTEALPVKLIGMNCQ 349 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 ++Y++FI ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 350 LMKRYIEFIY--------------RAENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVM 393 >gi|157952945|ref|YP_001497837.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella virus NY2A] gi|155123172|gb|ABT15040.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella virus NY2A] Length = 324 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 94/325 (28%), Positives = 155/325 (47%), Gaps = 28/325 (8%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S P++Y W Y A W EVP+ D+A W+ L +DER IK LGF Sbjct: 13 SRKFSAFPIQYHDLWNMYKKAVATFWTTEEVPLNADVADWRE--KLNNDERHFIKHILGF 70 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--- 145 FA S+ +V N+ + PE RQ+ Q F E+VHS + +I +L DE E Sbjct: 71 FAGSDGIVMENLQTNFGVEVMAPEARQFYAYQTFNESVHSEMYALLIDALISDEQERLDL 130 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 F+ +P++ KA WA ++ + + V ++ EG+ F F Sbjct: 131 FDAIETIPAVHNKAKWAQKW--------------LKPERSFAERLVAWICVEGILFSGSF 176 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 + L M G+ ++I RDE LH FG + ++++ K + + ++ Sbjct: 177 CALFWLRNKGVMPGLCLSNEFISRDEGLHQQFGELMYSKLQ-------NKLSFETIKQII 229 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 EA E + + +P +G+NA QY++F+A+R +G E ++ ++NPF +M E Sbjct: 230 MEAVTNEKEFICDAIPCSMIGMNADLMNQYIEFVADRIFTALGYEKVYN-SKNPFAFM-E 287 Query: 326 VIDLKKEKNFFETRVTEYQQGAELK 350 +I L+ + NFFE RV++YQ+ + Sbjct: 288 LISLEGKTNFFEKRVSDYQRPGVMN 312 >gi|296227442|ref|XP_002759378.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like isoform 2 [Callithrix jacchus] Length = 299 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 88/296 (29%), Positives = 141/296 (47%), Gaps = 28/296 (9%) Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Sbjct: 15 DEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCF 71 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173 Q E VHS + +I + D + FN +P + KA+WAL++ Sbjct: 72 YGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIAD----- 126 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 + + V + EG++F FA I L + M G+ + I RDE L Sbjct: 127 --------RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 178 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293 H +F + L K +++ R ++ +A +E + E +P G +G+N + Sbjct: 179 HCDFACLMFQY-------LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMK 231 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 QY++F+A+R ++G F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 232 QYIEFVADRLLVELGFSKFFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 285 >gi|308184827|ref|YP_003928960.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori SJM180] gi|308060747|gb|ADO02643.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori SJM180] Length = 341 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 175/347 (50%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E+++ +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPKLINEVIEMFKKAVEIEVSWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|196233679|ref|ZP_03132520.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus Ellin428] gi|196222349|gb|EDY16878.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus Ellin428] Length = 390 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 120/342 (35%), Positives = 185/342 (54%), Gaps = 3/342 (0%) Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + R + KR++N RS +LPLKY A+ Y NHW P + M D W Sbjct: 43 LDKAKARARLAGKRVINGLRSAELNVLPLKYHEAYRIYKQMKANHWEPDVIDMTRDSQQW 102 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L+ ER +I+ +G+F+++E +V ++++ I +L+ E + LR EE++H Sbjct: 103 NT-GALSPKERWIIEMGVGYFSAAEGIVGDSVLHVIEDNLTAAELKHASLRHIAEESIHM 161 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 + +II SL +D E+ + ++PS+ K + ++ L T T + Q+F + Sbjct: 162 DSLLHIIGSLNIDLDEVTAKFSDIPSVQRKNAFITRHMPELKMGIDLTQTAN-KQKFAKA 220 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 +F V EG FY FA ILSL R NKM GI + +QY +RDES H+ G ++ Q+ E Sbjct: 221 IFGITQVMEGTQFYALFAMILSLHRQNKMTGIGQMFQYTLRDESNHIELGRYILTQLIAE 280 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP +WT EF+ + + E LE + + +P+ VG+ Y+++ A+RR + Sbjct: 281 NPDIWTPEFRAELVEFMREGVELEKEFVRDCLPEDGVGMTQADFLTYVEYNADRRLAGLD 340 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 L L NPF W+ EVI L+KEKNFFETRVTEYQ LK Sbjct: 341 LPALSGVKTNPFAWLDEVIFLRKEKNFFETRVTEYQTSGSLK 382 >gi|109947017|ref|YP_664245.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter acinonychis str. Sheeba] gi|109714238|emb|CAJ99246.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter acinonychis str. Sheeba] Length = 341 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E ++ +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLIDEVIEMFKKAVKIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKIYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|84998662|ref|XP_954052.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate reductase small chain [Theileria annulata] gi|65305050|emb|CAI73375.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate reductase small chain, putative [Theileria annulata] Length = 322 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 84/303 (27%), Positives = 141/303 (46%), Gaps = 14/303 (4%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+ Y WE Y A + W E+ D W L DER I Sbjct: 19 ILNRNPNRTCLFPIVYPDFWEWYKKAQASFWTAEEIDFSMDYNHWH---KLNKDERHFIT 75 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ L R + PE + + Q E +HS T+ +I + DE Sbjct: 76 NVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVKDEA 135 Query: 144 EL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E F + ++ KANWA ++ +S + + ++ V Y EG+ Sbjct: 136 EKRRLFMAIETIDAVKDKANWAKKWITDENSFAERIVSNFKNKLINYYRIVAYAAVEGIL 195 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F + L + M G+ + I RDE LH +FG + + +K + P + Sbjct: 196 FSGSFCALFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYHNLKHKLPE-------EA 248 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + ++ EA ++E +Y +++P +G+N+ QY++F+A+R +G+ P++ T NPF Sbjct: 249 VQQIIKEAVVVERSYICDSLPCDLIGMNSQLMTQYIEFVADRLLQSLGVRPVYNVT-NPF 307 Query: 321 PWM 323 WM Sbjct: 308 DWM 310 >gi|317012862|gb|ADU83470.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Lithuania75] Length = 341 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 174/347 (50%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ I +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E ++ +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPKLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|27923845|sp|Q9QTF2|RIR2_RSIV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|5688956|dbj|BAA82755.1| ribonucleotide reductase small subunit [Red sea bream iridovirus] gi|327396894|dbj|BAK14260.1| ribonucleotide diphosphate reductase small subunit [Red sea bream iridovirus] Length = 312 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 149/324 (45%), Gaps = 28/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D L P W Y A + W EV + D+ W + LT+ ER + L FF Sbjct: 2 DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58 Query: 90 ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--F 146 A ++ +V +N+V + L PE R + Q E +H+ + +I +L E + F Sbjct: 59 AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALF 118 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 + ++P + AKA WA Q+ +A + + + + EG+ F FA Sbjct: 119 SAAEDMPCVKAKAQWAAQW-------------LNATHKPIATRLLAFAAVEGVMFSGSFA 165 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 I L + + M G+A + I RDE LH +F + Q+ K Q + ++ Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHQIIS 218 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 +A +E A+ E + +G+N+ S + Y+QF+A+R +G ++ + NPF +M Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNVS-NPFDFMDN- 276 Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350 I ++ + NFFE RV+EYQ+ Sbjct: 277 ISIEGKTNFFERRVSEYQRMGVFT 300 >gi|217032591|ref|ZP_03438080.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128] gi|298735909|ref|YP_003728434.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter pylori B8] gi|216945727|gb|EEC24352.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128] gi|298355098|emb|CBI65970.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter pylori B8] Length = 341 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 173/347 (49%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ I +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E + +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|299144102|ref|ZP_07037182.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518587|gb|EFI42326.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 346 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 84/350 (24%), Positives = 159/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + V + ++M+N + ++N +KY W + Y + NN W+P E+ M D+ Sbjct: 6 KALFNERGDVELTKRKMINGNTTNLNDFNNIKYTWVSDMYRTMMNNFWIPEEINMNQDIK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ + E+ + L F +S+ N+ I + + E L QA++EA+ Sbjct: 66 DYRNLDF---HEKKAYDKILSFLIFLDSIQTANL-PNISDYTTANEVNLILTIQAYQEAI 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ YI+ ++ E R + + L + ++ +E Sbjct: 122 HSQSYSYILDTIASPEE------RTEILYQWRDDEHLLNRNKFIGNIYNDFVENHTKETY 175 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++I ++K Sbjct: 176 MKTVMGNYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRNIIQELK 235 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T+E + + ML E EI + + G+ A + Y++++ N R Sbjct: 236 KEEVELFTEERINEYKCMLMEGVRQEIEWGQYVIGDNIQGITAQMVKDYIEYLGNLRSRS 295 Query: 307 IGLEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 IG LF N W+SE + + + +FFE +V+ Y + + + D Sbjct: 296 IGFGNLFDRNIEEPNSMKWVSEYSNPNEIKTDFFEGKVSAYSKSSVFEDD 345 >gi|317014473|gb|ADU81909.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Gambia94/24] Length = 341 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 92/347 (26%), Positives = 174/347 (50%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL ANN++ I +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E ++ +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKIYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|108563454|ref|YP_627770.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori HPAG1] gi|107837227|gb|ABF85096.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter pylori HPAG1] Length = 341 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E + +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|308183194|ref|YP_003927321.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori PeCan4] gi|308065379|gb|ADO07271.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori PeCan4] Length = 341 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E ++ +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|254779643|ref|YP_003057749.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori B38] gi|254001555|emb|CAX29573.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Helicobacter pylori B38] Length = 341 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSTEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E ++ +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|15612081|ref|NP_223733.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori J99] gi|11387046|sp|Q9ZKC3|RIR2_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|4155613|gb|AAD06604.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN [Helicobacter pylori J99] gi|307637755|gb|ADN80205.1| Ribonucleotide reductase of classIa beta subunit [Helicobacter pylori 908] gi|325996356|gb|ADZ51761.1| Ribonucleotide reductase of class Ia beta subunit [Helicobacter pylori 2018] gi|325997944|gb|ADZ50152.1| Ribonucleosidase diphosphate reductase beta subunit [Helicobacter pylori 2017] Length = 341 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 92/347 (26%), Positives = 174/347 (50%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL ANN++ I +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E ++ +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|188527870|ref|YP_001910557.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Shi470] gi|188144110|gb|ACD48527.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Shi470] gi|308063873|gb|ADO05760.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Sat464] Length = 341 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 173/347 (49%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEESI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E ++ +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|315586979|gb|ADU41360.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter pylori 35A] Length = 341 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E ++ +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|210135249|ref|YP_002301688.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori P12] gi|210133217|gb|ACJ08208.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter pylori P12] Length = 341 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 92/347 (26%), Positives = 174/347 (50%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL ANN++ I +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E ++ +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|208434985|ref|YP_002266651.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter pylori G27] gi|208432914|gb|ACI27785.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter pylori G27] Length = 341 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 92/347 (26%), Positives = 173/347 (49%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL ANN++ I +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E + +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|207092116|ref|ZP_03239903.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori HPKX_438_AG0C1] Length = 341 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 172/347 (49%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ I +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E + +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|15644992|ref|NP_207162.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori 26695] gi|2500210|sp|P55983|RIR2_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|2313466|gb|AAD07432.1| ribonucleoside diphosphate reductase, beta subunit (nrdB) [Helicobacter pylori 26695] Length = 341 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 92/347 (26%), Positives = 173/347 (49%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL ANN++ I +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E + +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|294463759|gb|ADE77404.1| unknown [Picea sitchensis] Length = 289 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 29/297 (9%) Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 EV + DL W LT +E+ I L FFA+S+ +V N+ + + PE R + Sbjct: 2 EEVDLSQDLYQW---VNLTKNEKHFISHVLAFFAASDGIVLENLAGRFLKDVQIPEARAF 58 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173 Q E +HS + ++ + D E FN +P + KA WA+++ Q+ S Sbjct: 59 YGFQIAIENIHSEMYSLLLETYIRDSKEKARLFNAINTIPCVARKAEWAMRWIQSSGS-- 116 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 + V + EG++F F I L + M G+ + I RDE L Sbjct: 117 ------------FAERIVSFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGL 164 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293 H +F + + +K + ++ + ++ +A +E + E + VG+NA Sbjct: 165 HCDFACLLYSLLKSKLSE-------ERVKAIVRDAVDIEREFVCEALSCDLVGMNATLMS 217 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 QY++FIA+R +G ++ + ENPF WM +I L+ + NFFE RV +YQ+ + + Sbjct: 218 QYIKFIADRLLVALGHGKMY-HVENPFDWMD-LISLQGKTNFFERRVGDYQKASIMS 272 >gi|217034470|ref|ZP_03439882.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10] gi|216943072|gb|EEC22549.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10] gi|317177841|dbj|BAJ55630.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F16] Length = 341 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 172/347 (49%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E + +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIESLWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|304439119|ref|ZP_07399038.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372478|gb|EFM26065.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus duerdenii ATCC BAA-1640] Length = 347 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 84/348 (24%), Positives = 161/348 (46%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + +++ + ++N + ++N +KY W + Y A NN W+P E+ + D+ + Sbjct: 9 LFNENGDIDLQKRTIINGNTTNLNDFNNIKYKWTSDWYRQAMNNFWIPEEINLSQDVLDY 68 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 K L + E+ + L F +S+ + + +++ E L Q+F+E++HS Sbjct: 69 K---ILDEAEKRAFDKILSFLIYLDSIQTAQL-PNLQAYITANEINLCLSIQSFQESIHS 124 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ YI+ ++ E R + L + + D + L Sbjct: 125 QSYSYILDTICSPEE------RTEILYQYINDKTLLERNKYITDQYAGFLNDKTKGNLMH 178 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K E Sbjct: 179 ALIANYILEGIYFYSGFMFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSIILDLKKE 238 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+T+E ++ R +L EIA+ + GL + E Y++++ N R +G Sbjct: 239 QPELFTEEKVEEYRALLKYGVEEEIAWGKYVIGDDIQGLTSKMVEDYIKYLGNLRATNLG 298 Query: 309 LEPLFKY---TENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352 EPL++ W+++ D+ + +FFE +VT Y + A ++ D Sbjct: 299 FEPLYEGYDKEVESMKWVTQYADINLLKTDFFEAKVTAYSKSAIIEDD 346 >gi|261838422|gb|ACX98188.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter pylori 51] Length = 341 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E ++ +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|261839822|gb|ACX99587.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori 52] Length = 341 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 173/347 (49%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E + +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|297380266|gb|ADI35153.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori v225d] gi|308062365|gb|ADO04253.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori Cuz20] gi|317180823|dbj|BAJ58609.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F32] gi|332673890|gb|AEE70707.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter pylori 83] Length = 341 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 173/347 (49%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E ++ +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|312599293|gb|ADQ91316.1| hypothetical protein BpV2_149c [Bathycoccus sp. RCC1105 virus BpV2] Length = 387 Score = 274 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 84/326 (25%), Positives = 149/326 (45%), Gaps = 29/326 (8%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ML + P+K+ W Y A ++W E+ D+ W NGL+D+E+ I Sbjct: 74 PMLLPTLSRFTVFPIKHENLWSLYKKAQMSNWTAEEIDFSKDMDDW---NGLSDNEKHFI 130 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140 K L FFA S+ +V NI + E R + QA E VH T+ +I Sbjct: 131 KYILAFFAGSDGIVFENINNNFADEIQLTEARSFYAYQAHNEMVHGETYSKLIDKYIKSS 190 Query: 141 -DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 ++ +LF + +P I KA WA+++ + + + + EG+ Sbjct: 191 TEKNQLFEAIQTIPCIERKAKWAMKWFD--------------KKRPFAERLLAFACVEGI 236 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 +F F I L + + G+ + I RDE +H F +++ N +K K + Sbjct: 237 FFSGSFCAIYWLKKRGLLPGLCFSNELISRDEGMHQEFAVELFNMLK-------NKPSGE 289 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319 ++ +A +E + + +P +G+N+ +Y++++A+R Q+G + ++ T+NP Sbjct: 290 IIEEIIRDAVTIEKEFITDALPCSLIGMNSSKMSEYIEYVADRLSKQVGHDKIWN-TKNP 348 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQ 345 F +M E I L + NFFE RV +Y + Sbjct: 349 FDFM-ENISLDGKTNFFEKRVGDYGK 373 >gi|62421216|gb|AAX82336.1| ribonucleotide reductase small chain [Orange-spotted grouper iridovirus] Length = 312 Score = 274 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 148/324 (45%), Gaps = 28/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D L P W Y A + W EV + D+ W + LT+ ER + L FF Sbjct: 2 DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58 Query: 90 ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--F 146 A ++ +V +N+V + L PE R + Q E +H+ + +I +L E + F Sbjct: 59 AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALF 118 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 + ++P + AKA WA Q+ +A + + + + EG+ F FA Sbjct: 119 SAAEDMPCVKAKAQWAAQW-------------LNATHKPIATRLLAFAAVEGVMFSGSFA 165 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 I L + + M G+A + I RDE LH +F + Q+ K Q + ++ Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHEIIS 218 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 +A +E A+ E + +G+N+ S + Y+QF+A+R +G ++ NPF +M Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNV-GNPFDFMDN- 276 Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350 I ++ + NFFE RV+EYQ+ Sbjct: 277 ISIEGKTNFFERRVSEYQRMGVFT 300 >gi|227498392|ref|ZP_03928542.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21] gi|226903854|gb|EEH89772.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21] Length = 342 Score = 274 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 88/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+ + ++ + +KY WA Y + NN W+P E+ + +D+ + LTD ER Sbjct: 18 MIGGNTTNLREWNRIKYDWANTLYRTMLNNFWIPEEISLNEDIKQF---PYLTDSERRAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + + F +S+ + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++ Sbjct: 75 DKIISFLNFLDSVQSENL-PNISRYITAPEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 ++++ +R ++ + + Q S D ++ V + EG++ Sbjct: 134 TRDKIYDEWRTDSTLLERNRFIADAYQRFSD--------DPNEGNFLHTIVANYILEGIY 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF+ +L R KM + ++YI RDE HL +++ +++ E P L+TKE Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLILFQNILRELRHERPDLFTKEQDAH 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 M+ + EI + +GLN E+Y++++AN R IGL PL+ ++NP Sbjct: 246 IADMIRQGAENEIKWGQYITDDKILGLNNGLIEKYIKYLANIRLEAIGLAPLYPEISQNP 305 Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ +L + +FFE +VT Y + A +D Sbjct: 306 MEWIESFSNLNGTKTDFFEAKVTNYTKAAAFDFD 339 >gi|317178607|dbj|BAJ56395.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F30] Length = 341 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 173/347 (49%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSTEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E ++ +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|317009697|gb|ADU80277.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori India7] Length = 341 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 172/347 (49%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSVEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E + +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|317182342|dbj|BAJ60126.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori F57] Length = 341 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 171/347 (49%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +V+++++ + + L +KY WA + + N W EV M DD Sbjct: 6 KKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDKR 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA+ Sbjct: 66 DY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEAL 122 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HSH + ++ S+ + E+++M+R + K ++ Q L+ K+ +E + Sbjct: 123 HSHAYAVMVESISANTEEIYDMWRNDMQLKNKNDYIAQVYMELA--------KNPTEENI 174 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 175 LKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALR 234 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+T + + M +A +E + +GL + EQY+QF+A+ R + Sbjct: 235 NERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRLSK 294 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 +G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D Sbjct: 295 VGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340 >gi|50237508|gb|AAT71841.1| ribonucleotide reductase small chain [Rock bream iridovirus] Length = 312 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 148/324 (45%), Gaps = 28/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D L P W Y A + W EV + D+ W + LT+ ER + L FF Sbjct: 2 DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58 Query: 90 ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--F 146 A ++ +V +N+V + L PE R + Q + +H+ + +I +L E + F Sbjct: 59 AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAMKNIHAEMYTQLIITLVAKENQAALF 118 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 + ++P + AKA WA Q+ +A + + + + EG+ F FA Sbjct: 119 SAAEDMPCVKAKAQWAAQW-------------LNATHKPIATRLLAFAAVEGVMFSGSFA 165 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 I L + + M G+A + I RDE LH +F + Q+ K Q + ++ Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHEIIS 218 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 +A +E A+ E + +G+N+ S + Y+QF+A+R +G ++ NPF +M Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNV-GNPFDFMDN- 276 Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350 I ++ + NFFE RV+EYQ+ Sbjct: 277 ISIEGKTNFFERRVSEYQRMGVFT 300 >gi|329113329|ref|ZP_08242110.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter pomorum DM001] gi|326697154|gb|EGE48814.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter pomorum DM001] Length = 339 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 95/348 (27%), Positives = 163/348 (46%), Gaps = 20/348 (5%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +S +G++ +L A P +Y WA++ +L+ HW+P EVP+ DD+ Sbjct: 1 MSEHMSGQEPQQEQKFDLLTANP---VYKPFRYPWAYDAWLTQQRLHWLPEEVPLADDVK 57 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W L + E+ ++ + FF S+ V N + R E L + E + Sbjct: 58 DWHRV--LNEGEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAFSNIETI 115 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 H + Y++ +LG+ E E ++ + + + K ++ T T D+ E Sbjct: 116 HIAAYSYLLDTLGMPETE-YSAFLKYKEMKDKYDYM------------QTFTVDSKHEIA 162 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + L F EG+ + FA +L+ R NK+ G+ + + +RDE+LH I + Sbjct: 163 KTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFI 222 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCH 305 ENP LWT++ + + + E A+ G V LNA + Y+ FIA+RR Sbjct: 223 QENPELWTEQLRTELTDICRTIVEHEEAFIDLAFEMGAVEGLNAEQVKTYIHFIADRRLT 282 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352 Q+GLEP++ T NP PW+ ++++ + NFFE R TEY + + W+ Sbjct: 283 QLGLEPIYNTTTNPLPWLDDMLNAVEHTNFFENRSTEYSRASTAGTWE 330 >gi|209966751|ref|YP_002299666.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum centenum SW] gi|209960217|gb|ACJ00854.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodospirillum centenum SW] Length = 322 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 156/322 (48%), Gaps = 17/322 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA+E +L+ HW+P EVP+ DD+ W+ LT+ ER ++ + FF + Sbjct: 11 VYKPFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWRQ--KLTEAERNLLTQIFRFFTQA 68 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + R E L + E VH + +++ ++G+ E E ++ + Sbjct: 69 DVEVNNCYMRHYSRVFQPTEVCMMLAAFSAMETVHIAAYSHLLDTIGMPEIE-YSAFLRY 127 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ D+ ++ + L VF EG+ + FA +++ Sbjct: 128 KEMKDKYDYM------------QGFNVDSLEDIAKTLAVFGAFTEGLQLFASFAILMNFP 175 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NKM G+ + + +RDE+LH I + ENP +WT+ FQ++ E Sbjct: 176 RFNKMKGMGQIVTWSVRDETLHTLSMIKLFRTFVNENPQVWTEAFQRELTVCCETIVHHE 235 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ G V + A ++Y+++IA+RR Q+GLEP+++ +NP PWM +++ + Sbjct: 236 DAFIDLAFEMGPVEGMTAEDVKRYIRWIADRRLGQLGLEPVYRIEKNPLPWMDAILNGIE 295 Query: 332 EKNFFETRVTEYQQGAE-LKWD 352 NFFE R TEY + A WD Sbjct: 296 HTNFFENRATEYSKAATRGTWD 317 >gi|194363985|ref|YP_002026595.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia R551-3] gi|194346789|gb|ACF49912.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia R551-3] Length = 339 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 100/337 (29%), Positives = 177/337 (52%), Gaps = 10/337 (2%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K+ML L P++Y ++ Y +A N W E+ Q D++ S ++ ER Sbjct: 5 PKQMLLDPGFELTLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDISDLHS--KMSPGERH 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I R + FFA+ +S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + Sbjct: 63 LIHRLVAFFATGDSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLP 122 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F + SI KA++ ++ ++ + T++ ++FL + F E Sbjct: 123 DPDERVKAFAAVENIDSIKKKADFCFKWIDSIQNLKRIE-TREERRQFLLNQICFAACIE 181 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F+ FA + + G+A ++ RDES H++F + ++ I+ E P L+ + Sbjct: 182 GLFFFAAFAYVYYFRSRGLLNGLASGTNWVFRDESAHMDFAFECVDVIREEEPDLFDDKM 241 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +Q ML EA E+ +A + + G G++ QY+Q A+ H++G+E + Sbjct: 242 KQDVYDMLAEAIECEVQFAEDVLSGGVAGISTRDMRQYLQHCADNHFHRLGMERKYNVR- 300 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352 NP +M E+ D+++ NFFE R + YQ G E+ +D Sbjct: 301 NPLSFM-ELQDVQELTNFFERRASAYQVGVQGEVAFD 336 >gi|131840053|ref|YP_001096062.1| ORF23 [Cyprinid herpesvirus 3] gi|84181618|gb|ABC55221.1| hypothetical protein [Cyprinid herpesvirus 3] gi|109706628|gb|ABG42854.1| ORF23 [Cyprinid herpesvirus 3] gi|129560539|dbj|BAF48834.1| ribonucleotide reductase small chain [Cyprinid herpesvirus 3] Length = 335 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 93/326 (28%), Positives = 156/326 (47%), Gaps = 27/326 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + L +++ W Y A ++W E+ + D A W+S L+++E+ Sbjct: 14 EPLLAPSNSRFTLDVIEHQDIWSMYKKAQFSNWTAEEIDLAKDTAGWES---LSENEKFF 70 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 +K L FFA+S+ +V N+ + + E R + Q E VHS + ++ + LD Sbjct: 71 LKNILAFFAASDGIVNENLATRFMKEVQYFEARCFYGFQIAIENVHSEVYAKLLNTYILD 130 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E F +P I KA+WAL + ++ D F + L F V EG Sbjct: 131 PVERNGLFKAMETMPCIKKKADWALNWIES------------PDATFGERLVAFTAV-EG 177 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + + HL K + Sbjct: 178 IFFSGAFASIFWLKQKVSMPGLTFSNELISRDEGLHRDFACLLFS------SHLRHKPSK 231 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ R ++ EA +E + +++P VG+N +Y+Q++A+ Q+GL L+ T Sbjct: 232 ERVRAIITEAVEIEKEFLTQSLPVSLVGMNHDLMCKYIQYVADHLLCQMGLSRLYN-TPC 290 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQ 344 PF +M E I L+ + NFFE RV +YQ Sbjct: 291 PFDFM-ENISLEGKTNFFEKRVADYQ 315 >gi|67585619|ref|XP_665115.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis TU502] gi|54655552|gb|EAL34885.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis] Length = 296 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 82/308 (26%), Positives = 139/308 (45%), Gaps = 29/308 (9%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W+ E+ + D W+S L D ER IK L FFA+S+ +V N+ + Sbjct: 1 MYKKAEASFWVTEEIDLSQDTRDWES---LKDPERHFIKYVLAFFAASDGIVMENLAVNF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161 R + PE R Y Q E +HS T+ +I D E F + ++ KA W Sbjct: 58 LREIQIPEARMYYAFQMSIEQIHSETYSLLIDRYITDIKERQMLFEAISHIEAVKKKAEW 117 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 A ++ + + + + + EG+ F F I L + M G+ Sbjct: 118 ATKWMNS--------------ERSFAERIIGFCAVEGILFSGSFCAIFWLKKRGLMPGLT 163 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I RDE LH +F + +K + P + + ++ EA +E + +++P Sbjct: 164 FSNELISRDEGLHADFACLIYKALKFKLPAP-------RVQQIISEAVEVERNFLCDSLP 216 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 +G+N+ QY++F+A+R + + ++ + NPF WM +I L+ + NFFE RV Sbjct: 217 VDLIGMNSRLMAQYIEFVADRLLFALDIPKIYNVS-NPFDWMD-LISLQGKTNFFEKRVG 274 Query: 342 EYQQGAEL 349 EYQ + Sbjct: 275 EYQMAGVM 282 >gi|292658982|gb|ADE34370.1| ribonucleotide reductase small chain [Turbot reddish body iridovirus] Length = 312 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 148/324 (45%), Gaps = 28/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D L P W Y A + W EV + D+ W + LT+ ER + L FF Sbjct: 2 DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58 Query: 90 ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--F 146 A ++ +V +N+V + L PE R + + E +H+ + +I +L E + F Sbjct: 59 AMADGIVGDNLVCNFAKELDHIPEARAFYGFRVAMENIHAEMYTQLIITLVAKENQAALF 118 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 + ++P + AKA WA Q+ +A + + + + EG+ F FA Sbjct: 119 SAAEDMPCVKAKAQWAAQW-------------LNATHKPIATRLLAFAAVEGVMFSGSFA 165 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 I L + + M G+A + I RDE LH +F + Q+ K Q+ + ++ Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMA-------NKPSQEDAHQIIS 218 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 +A +E A+ E + +G+N+ S Y+QF+A+R +G ++ NPF +M Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMRLYIQFVADRLLDALGYAKMYNVA-NPFDFMDN- 276 Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350 I ++ + NFFE RV+EYQ+ Sbjct: 277 ISIEGKTNFFERRVSEYQRMGVFT 300 >gi|242012701|ref|XP_002427066.1| Ribonucleoside-diphosphate reductase M2 subunit, putative [Pediculus humanus corporis] gi|212511324|gb|EEB14328.1| Ribonucleoside-diphosphate reductase M2 subunit, putative [Pediculus humanus corporis] Length = 304 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 26/304 (8%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 + N + + +L + P+++ W Y A + W EV + DL W+ Sbjct: 22 NDSRVFNKEIEPLLKENIKRFVIFPIEFPDIWHMYKKAEASFWTVEEVDLSKDLEHWE-- 79 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 L ER I L FFA+S+ +V N+V + + E R + Q E VHS + Sbjct: 80 -RLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVSEARCFYGFQIAMENVHSEMY 138 Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 +I + + E FN +P + KA+WAL++ + Sbjct: 139 SLLIDTYIKNPTEKHFLFNAIETMPCVKKKADWALKWI-------------SHKTATFAE 185 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++F FA I L + M G+ + I RDE LH +F + + Sbjct: 186 RVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKYV--- 242 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 K + + ++ +A +E + E +P +G+N ++Y++F+A+R ++G Sbjct: 243 ----VQKPTEDEICDIIKDAVAIEQEFLTEALPVNLIGMNCSLMKKYIEFVADRLLVELG 298 Query: 309 LEPL 312 + + Sbjct: 299 CKKV 302 >gi|296116311|ref|ZP_06834927.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter hansenii ATCC 23769] gi|295977130|gb|EFG83892.1| ribonucleotide-diphosphate reductase subunit beta [Gluconacetobacter hansenii ATCC 23769] Length = 334 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 85/316 (26%), Positives = 151/316 (47%), Gaps = 16/316 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA++ +L+ HW+P EVP+ DD+ W LT+ ER ++ + FF S Sbjct: 24 VYKPFRYPWAYDAWLTQQQVHWLPEEVPLADDVKDWH--RSLTESERHLVTQIFRFFTQS 81 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + + E L + E +H + +++ ++G+ E E ++ + + Sbjct: 82 DVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPESE-YSAFLKY 140 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ + E + L F EG+ + FA +L+ Sbjct: 141 KEMKDKYDYM------------QEFSVSNKYEIARTLAAFGAFTEGLQLFASFAILLNFP 188 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NK+ G+ + + +RDE+LH + ENP +WT++ Q R + + E Sbjct: 189 RFNKLKGMGQIVSWSVRDETLHCVSMARLFRVFVQENPEIWTQKLQDDIRQICRDIVEHE 248 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ + G V L+A ++Y++F+ANRR Q+GL+ L+ NP PW+ E+++ + Sbjct: 249 DAFIDLSFEMGPVEGLDAAQVKRYIRFVANRRLGQLGLDGLYDVATNPLPWVDEMVNAVE 308 Query: 332 EKNFFETRVTEYQQGA 347 NFFE R TEY + A Sbjct: 309 HANFFENRSTEYSRAA 324 >gi|19881429|ref|NP_612246.1| putative ribonucleotide reductase small subunit [Infectious spleen and kidney necrosis virus] gi|19773634|gb|AAL98748.1|AF371960_24 putative ribonucleotide reductase small subunit [infectious spleen and kidney necrosis virus] Length = 312 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 146/324 (45%), Gaps = 28/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D L P W Y A + W EV + D+ W LT+ ER + L FF Sbjct: 2 DKYVLRP-SDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TEKLTEAERRFMSHILAFF 58 Query: 90 ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--F 146 A ++ +V +N+V + L PE R + Q E +H+ + +I +L E + F Sbjct: 59 AMADGIVGDNLVCNFAKELDYIPEARAFYGFQVAMENIHAEMYTQLIITLVAKENQAALF 118 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 + ++P + AKA WA Q+ +A + + + + EG+ F FA Sbjct: 119 SAAEDMPCVKAKAQWAAQW-------------LNATHKSIATRLLAFAAVEGVMFSGSFA 165 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 I L + + M G+A + I RDE LH +F + Q+ K Q + ++ Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMA-------NKPCQDDAHQIIS 218 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 +A +E A+ E + +G+N+ S Y+QF+A+R +G ++ NPF +M Sbjct: 219 DAVDIETAFFQEALKTPLLGMNSDSMRLYIQFVADRLLDALGYAKMYNVA-NPFDFMDN- 276 Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350 I ++ + NFFE RV+EYQ+ Sbjct: 277 ISIEGKTNFFERRVSEYQRMGVFT 300 >gi|258542157|ref|YP_003187590.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter pasteurianus IFO 3283-01] gi|256633235|dbj|BAH99210.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636294|dbj|BAI02263.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639347|dbj|BAI05309.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642403|dbj|BAI08358.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645458|dbj|BAI11406.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648511|dbj|BAI14452.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651564|dbj|BAI17498.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654555|dbj|BAI20482.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter pasteurianus IFO 3283-12] Length = 339 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 94/342 (27%), Positives = 161/342 (47%), Gaps = 19/342 (5%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +S +G++ +L A P +Y WA++ +L+ HW+P EVP+ DD+ Sbjct: 1 MSEHMSGQEPQQEQKFDLLTANP---VYKPFRYPWAYDAWLTQQRLHWLPEEVPLADDVK 57 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W L + E+ ++ + FF S+ V N + R E L + E + Sbjct: 58 DWHRV--LNEGEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAFSNIETI 115 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 H + Y++ +LG+ E E ++ + + + K ++ T T D+ E Sbjct: 116 HIAAYSYLLDTLGMPETE-YSAFLKYKEMKDKYDYM------------QTFTVDSKHEIA 162 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + L F EG+ + FA +L+ R NK+ G+ + + +RDE+LH I + Sbjct: 163 KTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFI 222 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCH 305 ENP LWT++ + + + E A+ G V LNA + Y+ FIA+RR Sbjct: 223 QENPELWTEQLRTELTDICRTIVEHEEAFIDLAFEMGAVEGLNAEQVKTYIHFIADRRLT 282 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 Q+GLEP++ T NP PW+ ++++ + NFFE R TEY + + Sbjct: 283 QLGLEPIYNTTTNPLPWLDDMLNAVEHTNFFENRATEYSRAS 324 >gi|282849773|ref|ZP_06259157.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella parvula ATCC 17745] gi|282580710|gb|EFB86109.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella parvula ATCC 17745] Length = 342 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 88/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 75 DKIIAFLNFLDSIQSENL-PNLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 ++++ +R ++ + + Q S D + L + + EG++ Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF+ +L R KM + ++YI RDE HL ++I +++ E P L+T E + K Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 M+ + EIA+ +GLN E+Y++++AN R IGL L+ ENP Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKENP 305 Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ +L + +FFE +VT Y + A +D Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339 >gi|160947324|ref|ZP_02094491.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270] gi|158446458|gb|EDP23453.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270] Length = 349 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 158/350 (45%), Gaps = 15/350 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + + + ++M+N + ++N +KY W E Y +A NN W+P E+ + DL Sbjct: 6 KALFNENGDIELSKRKMINGNTTNLNDFNNVKYTWTTEWYRNAMNNFWIPEEINLFQDLK 65 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K L + E+ + L F +S+ N+ I +++ E L QA++EA+ Sbjct: 66 DYK---ILDEYEKTAFDKVLSFLIFLDSIQTANLPY-IGEYITANEINLCLTIQAYQEAI 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ Y++ S+ E R + + L + + D L Sbjct: 122 HSQSYGYMLDSICSPEE------RTNILYQWRDDEHLLARNKFIGDLYNEFQVNKDPYSL 175 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++ +++ Sbjct: 176 VKTMVANYILEGVYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFKKMLLELQ 235 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T+E + M+ EIA+ + + GL E Y++++ N R Sbjct: 236 NEEPELFTEEKVAVYKDMIKTGVEQEIAWGKYVLGENIPGLTIQMVEDYIKYLGNLRSTA 295 Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 + L+ Y E P W+SE D + +FFE + + Y + + + D Sbjct: 296 LNFGKLYDGYDEEPESMKWVSEYSDPNAIKTDFFEAKPSAYSKSSVIDDD 345 >gi|313894221|ref|ZP_07827786.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441045|gb|EFR59472.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 342 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 88/334 (26%), Positives = 166/334 (49%), Gaps = 17/334 (5%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + + F +S+ + N+ + R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 75 DKIIAFLNFLDSIQSENL-PNLSRYITASEVASLLNIQTFQEEIHAQSYSYILDTVTNPI 133 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 ++++ +R ++ A+ + Q S D + L + + EG++ Sbjct: 134 TRDKIYDEWRTDKTLLARNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF+ +L R KM + ++YI RDE HL ++I +++ E P L+T E ++K Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEEK 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 M+ + T EIA+ +GLN E+Y++++AN R IGL L+ +NP Sbjct: 246 ITDMIRQGTENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305 Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ +L + +FFE +VT Y + A +D Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339 >gi|221633388|ref|YP_002522613.1| ribonucleotide-diphosphate reductase subunit beta [Thermomicrobium roseum DSM 5159] gi|221156578|gb|ACM05705.1| ribonucleoside-diphosphate reductase, beta subunit [Thermomicrobium roseum DSM 5159] Length = 328 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 182/314 (57%), Gaps = 4/314 (1%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 +L PL + WA+ A +N W P EVP+ DD+ W + L+D+ER ++ LGFF Sbjct: 15 ELFPLSHPWAYAHVQQAKHNTWFPEEVPLHDDVRDWHER--LSDEERRAVEMFLGFFNPM 72 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 ESLV N++L++YR ++ PE R YL RQA+EEA H F+Y+I +L LD +F ++ E Sbjct: 73 ESLVTTNLLLSLYRAVTAPEARLYLARQAWEEANHVMAFEYVIKTLPLDRERVFGLHVEH 132 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 P++ AK + + + + Q +++L ++V+ EG++FY+GFA L+ Sbjct: 133 PAVAAK-ELFQRQLAEQWLVTPDVESVEGLQRLVRNLVGYFVILEGIFFYSGFALALAFR 191 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 + N + G+ ++++DESLHL+FGI +I I E+P + + F ++ R ++ A LE Sbjct: 192 QRNLLRGLCTIVDWVLKDESLHLSFGIHLITTILEEHPEIMSAAFGRQLRELILRAVELE 251 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 AY +P+ +GL+A +Y+++IA+RR ++GL F NP WM +D+ + Sbjct: 252 EAYNRAVLPEPLIGLDADVLNRYVRYIADRRLEELGLPIAFGE-PNPLRWMVAQVDMPEI 310 Query: 333 KNFFETRVTEYQQG 346 NFFE R Y+ G Sbjct: 311 VNFFEARNIHYEVG 324 >gi|269798663|ref|YP_003312563.1| ribonucleotide reductase [Veillonella parvula DSM 2008] gi|294792661|ref|ZP_06757808.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 6_1_27] gi|269095292|gb|ACZ25283.1| ribonucleotide reductase [Veillonella parvula DSM 2008] gi|294456560|gb|EFG24923.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 6_1_27] Length = 342 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 87/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 75 DKIIAFLNFLDSIQSENL-PNLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 ++++ +R ++ + + Q S D + L + + EG++ Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF+ +L R KM + ++YI RDE HL ++I +++ E P L+T E + K Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 M+ + EIA+ +GLN E+Y++++AN R IGL L+ +NP Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305 Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ +L + +FFE +VT Y + A +D Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339 >gi|303228685|ref|ZP_07315510.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-134-V-Col7a] gi|303230495|ref|ZP_07317254.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-049-V-Sch6] gi|302514861|gb|EFL56844.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-049-V-Sch6] gi|302516665|gb|EFL58582.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella atypica ACS-134-V-Col7a] Length = 342 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 87/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 75 DKIIAFLNFLDSIQSENL-PNLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 ++++ +R ++ + + Q S D + L + + EG++ Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF+ +L R KM + ++YI RDE HL ++I +++ E P L+T E + K Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 M+ + EIA+ +GLN E+Y++++AN R IGL L+ +NP Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305 Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ +L + +FFE +VT Y + A +D Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339 >gi|294794440|ref|ZP_06759576.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 3_1_44] gi|294454770|gb|EFG23143.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp. 3_1_44] Length = 342 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 88/334 (26%), Positives = 165/334 (49%), Gaps = 17/334 (5%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 75 DKIIAFLNFLDSIQSENL-PNLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 ++++ +R ++ + + Q S D + L + + EG++ Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF+ +L R KM + ++YI RDE HL ++I +++ E P L+T E + K Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 M+ + T EIA+ +GLN E+Y++++AN R IGL L+ +NP Sbjct: 246 ITDMIRQGTENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305 Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ +L + +FFE +VT Y + A +D Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339 >gi|88856487|ref|ZP_01131145.1| ribonucleotide-diphosphate reductase beta subunit [marine actinobacterium PHSC20C1] gi|88814354|gb|EAR24218.1| ribonucleotide-diphosphate reductase beta subunit [marine actinobacterium PHSC20C1] Length = 332 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 182/310 (58%), Gaps = 4/310 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY WA + Y A N W P E+ + +D+A +K +TD+ER + + +F +E Sbjct: 14 LKPIKYQWAMDLYDQAVANTWFPNEIQLGEDIADFK---KMTDEERHAVTFLMSYFNPNE 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y ++S EC YL +Q +EEA H +F+Y++ + +D +N + ++P Sbjct: 71 LLVNKALAFGVYPYVSAAECSLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHIDIP 130 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + L+Y + ++ + T + Q+F+++L + VV EG+WFY+GF LS + Sbjct: 131 SMARKEEFELKYIRRMTEQTLDINTIEGKQDFIRNLVAYNVVLEGIWFYSGFMVALSFRQ 190 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FGI++I + ENP + T+EF + R M+ +A +E Sbjct: 191 RNLLRNFGSLMDWVVRDESLHLKFGINLILTVLEENPEIQTEEFADEIRQMILDAVEMEE 250 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 AY H+ +P G +GLNA QY++++A+RR ++G EP +K T NP WM+ D + Sbjct: 251 AYNHDLLPGGILGLNANYINQYVKYLADRRLEELGFEPHYKVT-NPAKWMATANDTLELV 309 Query: 334 NFFETRVTEY 343 NFFE+ T Y Sbjct: 310 NFFESTNTSY 319 >gi|238018468|ref|ZP_04598894.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748] gi|237864939|gb|EEP66229.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748] Length = 342 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 87/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 75 DKIIAFLNFLDSIQSENL-PNLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 ++++ +R ++ + + Q S D + L + + EG++ Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF+ +L R KM + ++YI RDE HL ++I +++ E P L+T E + K Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 M+ + EIA+ +GLN E+Y++++AN R IGL L+ +NP Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305 Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ +L + +FFE +VT Y + A +D Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339 >gi|114799612|ref|YP_759103.1| ribonucleotide-diphosphate reductase subunit beta [Hyphomonas neptunium ATCC 15444] gi|114739786|gb|ABI77911.1| ribonucleoside-diphosphate reductase, beta subunit [Hyphomonas neptunium ATCC 15444] Length = 345 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 85/317 (26%), Positives = 150/317 (47%), Gaps = 17/317 (5%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N P +Y WA+E + HWMP EVP+ +D W L+D ER ++ + FF Sbjct: 16 NAYKPFRYPWAYEFWKKQQQVHWMPEEVPLGEDCKDWA--VKLSDAERNLLTQIFRFFTQ 73 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 S+ V N + E L + E +H + ++ ++G+ + E F+ + E Sbjct: 74 SDVEVGANYMEHYMPLFKPVEVSMMLASFSNMETIHVAAYALLLETIGMPDSE-FSAFME 132 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + AK ++ Q + +++ + VF EG+ + FA +++ Sbjct: 133 YKEMAAKHDYLGQ------------FGTETNEDIAVSMAVFGAFTEGLQLFASFAMLMNF 180 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 R NKM G+ + + +RDESLH I + + E + T E +++ R L Sbjct: 181 PRFNKMKGMGQIVTWSIRDESLHCEGMIKLFHSFCAETG-VMTDELRERIRDCCRTVVAL 239 Query: 272 EIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E + G V + A + Y+++IA+ R +Q+ LEP++ T++P PW++E+++ Sbjct: 240 EDKFIELAFEMGPVEGMTADDIKNYIRYIADWRLNQLKLEPIYGVTKHPIPWLTEILNGV 299 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE R TEY +GA Sbjct: 300 EHANFFEQRSTEYSKGA 316 >gi|17158292|ref|NP_477710.1| wsv188 [Shrimp white spot syndrome virus] gi|14189948|gb|AAK55515.1|AF267731_1 ribonucleotide reductase small subunit [shrimp white spot syndrome virus] gi|15021490|gb|AAK77767.1|AF369029_98 ORF98, putative ribonucleotide reductase small subunit (RR2) [shrimp white spot syndrome virus] gi|17016586|gb|AAL33192.1| wsv188 [shrimp white spot syndrome virus] gi|19481835|gb|AAL89111.1| WSSV243 [shrimp white spot syndrome virus] Length = 413 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 89/336 (26%), Positives = 155/336 (46%), Gaps = 28/336 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V+ + + P+ + WE Y W E+ + D W+ LT Sbjct: 52 VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 108 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + +I Sbjct: 109 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 168 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 L DE + FN + P+I K WA+ + Q+ + L +L V + Sbjct: 169 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIVAF 214 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F FA I + + G+ ++I RDE LH +F ++ + ++ P Sbjct: 215 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 271 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +++ ++ EA +E + ++P VG+N QY++F+A++ ++GLE + Sbjct: 272 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 328 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 T NPFP+M I L+ + NFFE RV EYQ+ + Sbjct: 329 NVT-NPFPFMDN-ISLENKTNFFEKRVAEYQRAQVM 362 >gi|311743885|ref|ZP_07717691.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium marinum DSM 15272] gi|311313015|gb|EFQ82926.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium marinum DSM 15272] Length = 357 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 105/317 (33%), Positives = 179/317 (56%), Gaps = 4/317 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA E Y A N W P E+ + +DLA ++ ++D+ER + + +F +E Sbjct: 45 LKPVTYPWAMELYDQAVANTWFPNEIQLGEDLADFE---RMSDEERHALTFLMSYFNPNE 101 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H +F+Y++ + +D + + VP Sbjct: 102 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYGSHVTVP 161 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ AK + +++ + ++ + T + Q+F+++L + V+ EG+WFY+GF LS + Sbjct: 162 SMAAKEEFEIRFIRRMTEQTLDITTTEGKQDFVRNLVAYNVILEGIWFYSGFMVALSFRQ 221 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +I+RDESLHL FGI++I + ENP + T EF + + M+ +A +E Sbjct: 222 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPEVATAEFAAEIQQMVLDAVEMEE 281 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 AY + +P G +GLNA QY++++A+RR ++G P + T NP WM+ D + Sbjct: 282 AYNRDLLPGGILGLNADYINQYVRYLADRRLEELGFGPHYGAT-NPAKWMATANDTLQLV 340 Query: 334 NFFETRVTEYQQGAELK 350 NFFE T Y+ A+L Sbjct: 341 NFFEATNTSYEVNAKLT 357 >gi|313887688|ref|ZP_07821370.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846297|gb|EFR33676.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 346 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 157/348 (45%), Gaps = 15/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + + +R++N + ++N LKY W + Y A NN W+P E+ + D+ + Sbjct: 8 LFNEKGDIETSKRRVINGNTTNLNDFNNLKYSWTSDWYRQAMNNFWIPEEINLSQDVKDY 67 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L E+ + L F +SL I + +++ E L Q ++E++HS Sbjct: 68 R---ELDKAEKTAYDKILSFLIYLDSLQTAQI-PKLQSYVTANEINLCLSIQGYQESIHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ YI+ ++ E RE K + L + ++ + + Sbjct: 124 QSYSYILDTICSPEE------REEILYQYKDDEVLLKRNKFIGDQYQDFYENENLDNFMK 177 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + EG++FY+GF+ +LGR KM G + +YI RDE+ HL +I ++K E Sbjct: 178 ALIANYILEGIYFYSGFSFFYNLGRMGKMPGTVSEIRYINRDENTHLWLFRSIILEMKKE 237 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P ++T E +K + ML + EIA+ + GLN E Y+ ++ N R +G Sbjct: 238 EPEIFTDENIEKYKEMLKKGVEEEIAWGKYVIGDEIKGLNEKMIEDYIMYLGNLRSRNLG 297 Query: 309 LEPLFKYT---ENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 LF W+SE D + + +FFE R + Y + + ++ D Sbjct: 298 FGNLFDENIDEPESMKWVSEYSDPNQIKTDFFEARPSAYSKSSVIEDD 345 >gi|255323570|ref|ZP_05364700.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter showae RM3277] gi|255299284|gb|EET78571.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter showae RM3277] Length = 340 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 95/345 (27%), Positives = 160/345 (46%), Gaps = 14/345 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I N+ D+R+ N + KY WA + + N W P EV DD+ + Sbjct: 6 IYNPSSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDVRDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 AY--NLTQAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ ++ ++ + ++ M + + K ++ + L+ + E L Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAG--------EVTDEKLLL 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E Sbjct: 176 AMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRTE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+T E + K M A LEI + +G EQY++++ ++R IG Sbjct: 236 RPDLFTPETEAKIYDMFERAGELEIKWGKYITQNQIMGFTDDIIEQYIRYLIDQRLVAIG 295 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 L+ + +P W+ + +K NFFE +VT Y +G+ + +D Sbjct: 296 LKRRYNV-PHPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS-ISFD 338 >gi|223039245|ref|ZP_03609535.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter rectus RM3267] gi|222879606|gb|EEF14697.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter rectus RM3267] Length = 340 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 159/345 (46%), Gaps = 14/345 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I N+ D+R+ N + KY WA + + N W P EV D+ + Sbjct: 6 IYNPGSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTSGDVRDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 AY--SLTQAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ ++ ++ + ++ M + + K ++ + L+ + E L Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAG--------EVTDEKLLL 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E Sbjct: 176 AMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRTE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+T E + K M A LEI + +G EQY++++ ++R IG Sbjct: 236 RPDLFTSEMEAKIYDMFKRAGELEIKWGKYITQNQIMGFTDDIIEQYIRYLIDQRLVAIG 295 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 L+ + +P W+ + +K NFFE +VT Y +G+ + +D Sbjct: 296 LKRRYDAR-HPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS-ISFD 338 >gi|237749822|ref|ZP_04580302.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter bilis ATCC 43879] gi|229374572|gb|EEO24963.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter bilis ATCC 43879] Length = 351 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 164/346 (47%), Gaps = 14/346 (4%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N I +V+++R+ + + +L +KY WA+ + N W P EV M Sbjct: 10 NRVSRKKIYNPHSTESVNERRIFGGNPTAIFELNKIKYQWAYNLLRTMFANTWFPEEVNM 69 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + LT E+ R L +SL NN+ I +++ PE L+RQA Sbjct: 70 NQDKRDY---MELTLQEKQGYDRALAQLIFMDSLQTNNLTDNINPYITCPEINMLLVRQA 126 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 FEE++H+ ++ ++ S+ + E++ M+R+ + +K ++ L+ K+ Sbjct: 127 FEESLHAQSYAVMVDSISANTDEIYQMWRKDDKLRSKNDYIADVYTDLA--------KNP 178 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 + L + EG++FY+GFA +L R+ KM AE ++I RDE HL + Sbjct: 179 TETNLIKAMFANQILEGIYFYSGFAFFYTLARSGKMQNSAEMIRFIQRDEITHLTIFQQM 238 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 I + E P L+T+ Q + M +A LE ++ +GL A QY++++A+ Sbjct: 239 IISTRKERPDLFTQALQDEVMEMFRQAVDLESSWGEYITQGQILGLTAKIIRQYIEYLAD 298 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQG 346 +R + L+ T+NP W+ E ++ + NFFE +V Y +G Sbjct: 299 KRLKAVDYPILYN-TQNPIQWVDEQVNFNNQRTNFFEAKVRNYTRG 343 >gi|417659|sp|P32209|RIR2_SWPVK RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|347472|gb|AAC37857.1| ribonucleotide reductase [Swinepox virus] Length = 274 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 72/293 (24%), Positives = 125/293 (42%), Gaps = 27/293 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P+KY W+ Y + + W EV + DL W + LT DE+ Sbjct: 2 EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFASS+ +V N+ Y + E R + Q E +HS + +I + D Sbjct: 59 IKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN + + KA+WA ++ + + + V + EG Sbjct: 119 NIEKMHLFNAIETMECVKKKADWARKWI--------------SSNKVYGERVVAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I + + M G+ + I RDE LH +F + HL + Sbjct: 165 IFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHPPSK 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + +++ +A +E + +P +G+N QY++F+A+R ++G E Sbjct: 218 EVITSIIIDAVNIEKEFLTVAIPVDLIGMNCCLMSQYIEFVADRLLTELGCEK 270 >gi|7672989|gb|AAF66689.1|AF144620_1 ribonucleotide reductase small subunit [shrimp white spot syndrome virus] Length = 413 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 89/336 (26%), Positives = 155/336 (46%), Gaps = 28/336 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V+ + + P+ + WE Y W E+ + D W+ LT Sbjct: 52 VDTFKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 108 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + +I Sbjct: 109 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 168 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 L DE + FN + P+I K WA+ + Q+ + L +L V + Sbjct: 169 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIVAF 214 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F FA I + + G+ ++I RDE LH +F ++ + ++ P Sbjct: 215 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 271 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +++ ++ EA +E + ++P VG+N QY++F+A++ ++GLE + Sbjct: 272 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 328 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 T NPFP+M I L+ + NFFE RV EYQ+ + Sbjct: 329 NVT-NPFPFMDN-ISLENKTNFFEKRVAEYQRAQVM 362 >gi|118474076|ref|YP_891239.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter fetus subsp. fetus 82-40] gi|118413302|gb|ABK81722.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter fetus subsp. fetus 82-40] Length = 340 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 161/347 (46%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I ++D+++ + KY WA + + N W P EV DD+ Sbjct: 4 KKIYNPSSNETLNDRKVFGGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTDDVR 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + LT E+ M S +S NN+ I +++ PE L RQA+EEA Sbjct: 64 DYAC--NLTTAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAILARQAYEEAN 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ ++ + ++ M + + K ++ + L+ + E L Sbjct: 122 HSKSYAVMVEAICDNTDLIYEMEKYDDVLRKKNDYISSVYEELAG--------EVTDEKL 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ Sbjct: 174 LLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVR 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T E + K M +A LEI + +G E+Y+ ++ + R Sbjct: 234 KERPDLFTSEVEAKIYEMFKKAGDLEIEWGKYITGNQIMGFTDDIIEEYIHYLVDDRLTS 293 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 IGL+ L+ ++P W+ + +K NFFE++VT Y +G+ L +D Sbjct: 294 IGLKKLYN-AKHPIKWVDDFAKFNDQKSNFFESKVTNYSKGS-LTFD 338 >gi|282174133|ref|YP_003358235.1| ORF96 [Anguillid herpesvirus 1] gi|281308976|gb|ADA57859.1| ORF96 [Anguillid herpesvirus 1] Length = 328 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 84/334 (25%), Positives = 147/334 (44%), Gaps = 26/334 (7%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ ++ + P++ W Y +A +W EV + D+ W+ + L DER Sbjct: 7 EPLLDPANNRDVTFPIREHAIWAMYKTAQAANWSAEEVDLAQDVTHWEKR--LNKDERHF 64 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+++ LV N+ + + E + Q E VH+ + +I +L D Sbjct: 65 ISHVLAFFAAADGLVNANLGQRFTQEVQYLEATYFYNFQMAIENVHAEMYSKLIATLIKD 124 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P I KA WA ++T + V + EG Sbjct: 125 VKEQDRLFNAVERMPCIAKKAEWAKRWTHD-------------TNASFGERLVAFAAVEG 171 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L M G+ ++I RDE LH +F + H+ K Sbjct: 172 IFFSGAFAAIFWLKPRGIMPGLIMSNEFISRDEGLHCDFACLLFK------DHILGKPGY 225 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ ++ EA +E + E +P +G+N Y++F+A+R +G + + +N Sbjct: 226 ERVSQIVTEAVEIEKEFLSEALPVRLLGINCEQMCSYIEFVADRLLAALGFPKRY-HVKN 284 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 PF +M E I ++ + NFFE V++Y++ D Sbjct: 285 PFGFM-ESISMEGKTNFFEKNVSQYKKFTFSDKD 317 >gi|71083845|ref|YP_266565.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Pelagibacter ubique HTCC1062] gi|71062958|gb|AAZ21961.1| ribonucleoside-diphosphate reductase beta chain [Candidatus Pelagibacter ubique HTCC1062] Length = 337 Score = 269 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 83/316 (26%), Positives = 149/316 (47%), Gaps = 16/316 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y W ++ +L+ HW+P EVP+ DD+ W+ LT E+ ++ + FF + Sbjct: 27 VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLTQSEKNLLTQIFRFFTQA 84 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + E + A E VH + +++ ++G+ E E ++ + + Sbjct: 85 DVEVQNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESE-YSAFMKY 143 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ + + + ++ + VF EG+ + FA +L+ Sbjct: 144 KEMKDKYDYMQNFDMS------------SKKDIALTVAVFSAFTEGLQLFASFAILLNFP 191 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NKM G+ + + +RDE+LH N I + + ENP +WT E + + E Sbjct: 192 RHNKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEIWTPELKAELYKACRTIIEHE 251 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ G + L A + Y++FIANRR Q+GLEP++ +NP W+ +++ + Sbjct: 252 DAFIDLAFEMGPMQGLTAQDVKLYIRFIANRRLSQLGLEPIYDVDKNPLTWLDSMLNAVE 311 Query: 332 EKNFFETRVTEYQQGA 347 NFFE R TEY + A Sbjct: 312 HMNFFEGRSTEYSKAA 327 >gi|91763118|ref|ZP_01265082.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus Pelagibacter ubique HTCC1002] gi|91717531|gb|EAS84182.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus Pelagibacter ubique HTCC1002] Length = 342 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 83/316 (26%), Positives = 149/316 (47%), Gaps = 16/316 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y W ++ +L+ HW+P EVP+ DD+ W+ LT E+ ++ + FF + Sbjct: 32 VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLTQSEKNLLTQIFRFFTQA 89 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + E + A E VH + +++ ++G+ E E ++ + + Sbjct: 90 DVEVQNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESE-YSAFMKY 148 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ + + + ++ + VF EG+ + FA +L+ Sbjct: 149 KEMKDKYDYMQNFDMS------------SKKDIALTVAVFSAFTEGLQLFASFAILLNFP 196 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NKM G+ + + +RDE+LH N I + + ENP +WT E + + E Sbjct: 197 RHNKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEIWTPELKAELYKACRTIIEHE 256 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ G + L A + Y++FIANRR Q+GLEP++ +NP W+ +++ + Sbjct: 257 DAFIDLAFEMGPMQGLTAQDVKLYIRFIANRRLSQLGLEPIYDVDKNPLTWLDSMLNAVE 316 Query: 332 EKNFFETRVTEYQQGA 347 NFFE R TEY + A Sbjct: 317 HMNFFEGRSTEYSKAA 332 >gi|258511567|ref|YP_003185001.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478293|gb|ACV58612.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 369 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 164/346 (47%), Gaps = 13/346 (3%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + E + +R++ + ++ +L +KY WA++ Y + NN W+P E+P+ DD + Sbjct: 32 LFNAEGDRDWGKRRIIGGNTTNMIELNNIKYEWAYKLYRAMMNNFWIPEEIPLADDARQY 91 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L+DDER + L F +SL+ +N+ I +++ PE L AF+EAVHS Sbjct: 92 ---DLLSDDERRSYNKVLSFLIFMDSLLTHNL-PNINEYITAPEVNLCLTVHAFQEAVHS 147 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ Y++ S+ R+ + + L + F ++ L Sbjct: 148 QSYGYVLDSVVNP------ATRDQIYNEWRNDDHLLRRNQFITDLFEEFIENPTDRNLMK 201 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY GF LGR KM+G + ++I RDE HL ++ ++I E Sbjct: 202 TIVANYILEGVYFYAGFGFFFVLGRQGKMLGTVSEIKFIQRDELTHLAIFRNLYHEIIRE 261 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP + T + +++ M+ A EIA+ VGL + Y++++AN R + Sbjct: 262 NPGIVTPDMEEEFVEMMRTAVQHEIAWGQYVTQGKIVGLTDALIDAYIKYLANLRLQSLN 321 Query: 309 LEPLFK-YTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 L L+ E+P PWM + +FFE RVT Y + L WD Sbjct: 322 LPILYPEIKEHPMPWMDSFAAINSHKTDFFEQRVTNYTKAGNLNWD 367 >gi|58040422|ref|YP_192386.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter oxydans 621H] gi|58002836|gb|AAW61730.1| Ribonucleoside-diphosphate reductase beta chain [Gluconobacter oxydans 621H] Length = 339 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 153/316 (48%), Gaps = 16/316 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA++ +L+ HW+P EVP+ DD+ W LT+ ER ++ + FF S Sbjct: 24 VYKPFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWH--RTLTEAERHLVTQIFRFFTQS 81 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E L + E +H + +++ ++G+ E E ++ + + Sbjct: 82 DVEVNSAYMKYYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YSAFLKY 140 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ + D +E + + F EG+ + FA +L+ Sbjct: 141 KEMKDKYDFM------------QSFNIDNKREIAKTMAAFGAFMEGLQLFASFAILLNFP 188 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NK+ G+ + + +RDE+LH I + EN +WT EF+++ + E Sbjct: 189 RFNKLKGMGQIVSWSVRDETLHCLSMIRLFRTFVRENSEIWTPEFREELTQICRTTVEHE 248 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ G V +++ ++Y++FIA+RR Q+GL+P++ NP PW+ ++++ + Sbjct: 249 DAFIDLCFEMGPVEGMSSEDVKRYIRFIADRRLTQLGLDPVYGQESNPLPWIDDMLNAVE 308 Query: 332 EKNFFETRVTEYQQGA 347 NFFE R TEY + + Sbjct: 309 HANFFENRSTEYSRAS 324 >gi|154174558|ref|YP_001409201.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter curvus 525.92] gi|112803525|gb|EAU00869.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter curvus 525.92] Length = 340 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 95/345 (27%), Positives = 163/345 (47%), Gaps = 14/345 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I N+ D+R+ N + KY WA + + N W P EV DD+ + Sbjct: 6 IYNPSSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDVRDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 LTD E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 AY--NLTDAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ ++ ++ + ++ M + + K ++ + L+ + E L Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAG--------EVTDEKLLL 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E Sbjct: 176 AMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRAE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 L+T E ++K M +A LEI + +G E+Y+ ++ ++R IG Sbjct: 236 RSDLFTPEMEEKIYDMFEKAGNLEIKWGRYITQNQIMGFTDDIIEEYIHYLVDQRLVAIG 295 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 L+ + ++P W+ + +K NFFE++VT Y +G+ L +D Sbjct: 296 LKRKYN-AKHPIKWVDDFAKFNDQKSNFFESKVTNYSKGS-LSFD 338 >gi|260909050|gb|ACX54162.1| RR2 protein [Shrimp white spot syndrome virus] gi|260909052|gb|ACX54163.1| RR2 protein [Shrimp white spot syndrome virus] gi|260909054|gb|ACX54164.1| RR2 protein [Shrimp white spot syndrome virus] gi|260909056|gb|ACX54165.1| RR2 protein [Shrimp white spot syndrome virus] Length = 349 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 89/336 (26%), Positives = 155/336 (46%), Gaps = 28/336 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V+ + + P+ + WE Y W E+ + D W+ LT Sbjct: 37 VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 93 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + +I Sbjct: 94 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 153 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 L DE + FN + P+I K WA+ + Q+ + L +L V + Sbjct: 154 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIVAF 199 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F FA I + + G+ ++I RDE LH +F ++ + ++ P Sbjct: 200 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 256 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +++ ++ EA +E + ++P VG+N QY++F+A++ ++GLE + Sbjct: 257 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 313 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 T NPFP+M I L+ + NFFE RV EYQ+ + Sbjct: 314 NVT-NPFPFMDN-ISLENKTNFFEKRVAEYQRAQVM 347 >gi|229827460|ref|ZP_04453529.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC 49176] gi|229788398|gb|EEP24512.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC 49176] Length = 354 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 89/336 (26%), Positives = 165/336 (49%), Gaps = 17/336 (5%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +LN + ++ + +KY WA Y + NN W+P E+ + +D+ + + LT ER Sbjct: 28 EGILNGNTTNLREWNRIKYDWANVMYRTMLNNFWIPEEISLGEDIKQF---SYLTAGERK 84 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ N+ + R+++ E L QAF+E +H+ ++ YI+ ++ Sbjct: 85 AFDKIISFLNFLDSIQCENL-PNLARYITAAEVASLLNVQAFQEEIHAQSYSYILDTVTN 143 Query: 141 D--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 ++++ +RE P + + + Q + D E + + EG Sbjct: 144 PVTRDKIYDEWREDPILLRRNKFIADMYQRFAD--------DPSTENFVRSVMANYILEG 195 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++FY+GF+ +L R KM + ++YI RDE HL ++I ++ ENP ++T E + Sbjct: 196 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLVLFQNIIRELMKENPEIFTDELK 255 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317 + R M+ TL EI + +G+N E+Y+++++N R IGL F TE Sbjct: 256 GELREMVKVGTLNEIEWGQYVTNNEILGINNELIERYIKYLSNLRLRAIGLPVWFPEITE 315 Query: 318 NPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352 NP W+ +L + +FFE +VT Y + A +D Sbjct: 316 NPMAWIESFSNLNATKTDFFEAKVTNYTKAAAFDFD 351 >gi|157164305|ref|YP_001467763.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter concisus 13826] gi|112800348|gb|EAT97692.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter concisus 13826] Length = 340 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 95/345 (27%), Positives = 161/345 (46%), Gaps = 14/345 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I N+ D+R+ N + KY WA + + N W P EV DD+ + Sbjct: 6 IYNPSSNENLTDRRVFNGNPHGILNFTKAKYEWALKLWDLMEANTWFPKEVDTTDDVRDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 LT+ E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 AY--NLTEAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ ++ ++ + ++ M + + K ++ + L+ + E L Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDDVLREKNDYISSVYEELAG--------EVTDEKLLL 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E Sbjct: 176 AMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+T E + K M +A LEI + +G EQY+ ++ ++R IG Sbjct: 236 RPDLFTPETEAKIYDMFEKAGNLEIKWGKYITQNQIMGFTDDIIEQYIHYLIDQRLVAIG 295 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 L+ + +P W+ + +K NFFE +VT Y +G+ + +D Sbjct: 296 LKRKYNVA-HPIKWVDDFAKFNDQKSNFFEAKVTNYSKGS-ISFD 338 >gi|296536499|ref|ZP_06898590.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas cervicalis ATCC 49957] gi|296263178|gb|EFH09712.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas cervicalis ATCC 49957] Length = 343 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 83/322 (25%), Positives = 152/322 (47%), Gaps = 17/322 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA++ +++ HW+P EVPM DD+ W+ LT+ ER ++ + FF + Sbjct: 18 VYKPFRYPWAYDAWMTQQRVHWLPEEVPMADDVKDWQK--NLTESERNLLTQIFRFFTQA 75 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + + E L + E +H + +++ ++G+ E E + + + Sbjct: 76 DVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YQAFLKY 134 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ + + + E + L F EG+ + FA +++ Sbjct: 135 KEMKDKYDYM------------QSFSVENKTEIAKTLAAFGAFTEGLQLFASFAILMNFP 182 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NKM G+ + + +RDE+LH I + ENP +WT++ + + E Sbjct: 183 RFNKMKGMGQIVSWSVRDETLHCLSVIRLFRTFIQENPEIWTEQLKADLVEICTTIVEHE 242 Query: 273 IAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ G G+ +QY++FIA+RR Q+GLEP + +NP PW+ E+++ + Sbjct: 243 DAFIDLAFELGGVQGMEPEDVKQYIRFIADRRLQQLGLEPHYGTEKNPLPWLDEILNAVE 302 Query: 332 EKNFFETRVTEYQQGA-ELKWD 352 NFFE R TEY + + W+ Sbjct: 303 HMNFFEGRATEYSKASTAGTWE 324 >gi|114327552|ref|YP_744709.1| ribonucleotide-diphosphate reductase subunit beta [Granulibacter bethesdensis CGDNIH1] gi|114315726|gb|ABI61786.1| ribonucleoside-diphosphate reductase beta chain [Granulibacter bethesdensis CGDNIH1] Length = 339 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 155/322 (48%), Gaps = 17/322 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA+E +L HW+P EVP+ DD+ W L + E+ ++ + FF S Sbjct: 29 VYKPFRYPWAYEAWLVQQQVHWLPEEVPLADDVKDWH--RNLNEVEQHLVTQIFRFFTQS 86 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + R E L + E +H + +++ ++G+ E E ++ + + Sbjct: 87 DVEVNNCYMKHYSRVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEVE-YSAFLKY 145 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ + D+ +E + L F EG+ + FA +L+ Sbjct: 146 KEMKDKYDYMHS------------FSVDSKREIAKTLAAFGAFTEGLQLFASFAILLNFP 193 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R K+ G+ + + +RDE+LH I + + EN +WT++ +Q+ R + E Sbjct: 194 RFGKLKGMGQIVSWSVRDETLHCLSIIKLFHVFIDENREIWTEDLRQEIRQICATIVEHE 253 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ G V L+A + Y+++IA+RR Q+GLEPLF NP PW+ ++++ + Sbjct: 254 DAFIDLAFELGSVEGLDAAQVKSYIRYIADRRLIQLGLEPLFHVERNPLPWIDDMLNAVE 313 Query: 332 EKNFFETRVTEYQQGAEL-KWD 352 NFFE R TEY + + + W+ Sbjct: 314 HANFFENRATEYSRASTVGTWE 335 >gi|71033209|ref|XP_766246.1| ribonucleotide-diphosphate reductase small subunit [Theileria parva strain Muguga] gi|68353203|gb|EAN33963.1| ribonucleotide-diphosphate reductase small subunit, putative [Theileria parva] Length = 308 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 84/313 (26%), Positives = 138/313 (44%), Gaps = 38/313 (12%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 +LN + L P+ Y WE Y A + W E+ D W L DER I Sbjct: 10 LLNRNPNRTSLFPIVYPEFWEWYKKAQASFWTAEEIDFSMDYNHWH---RLNKDERHFIT 66 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L FFA+S+ +V N+ L R + PE + + Q E +HS T+ +I + DE Sbjct: 67 NVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVKDEA 126 Query: 144 EL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E F + ++ KANWA ++ D+ + V Y EG+ Sbjct: 127 EKRRLFMAIETIDAVKDKANWAKKWI--------------TDENSFAERIVAYAAVEGIL 172 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 F F + L + M G+ + I RDE LH +FG + + +K + P + Sbjct: 173 FSGSFCALFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYHNLKHKLPE-------EA 225 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNA----------PSCEQYMQFIANRRCHQIGLE 310 + ++ EA ++E +Y +++P +G+N+ QY++F+A+R +G+ Sbjct: 226 VQQIIKEAVVVERSYICDSLPCDLIGMNSRKKILTHCLIELMTQYIEFVADRLLQALGVR 285 Query: 311 PLFKYTENPFPWM 323 P++ T NPF WM Sbjct: 286 PVYNVT-NPFDWM 297 >gi|218289144|ref|ZP_03493380.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius LAA1] gi|218240727|gb|EED07906.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus acidocaldarius LAA1] Length = 345 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 164/346 (47%), Gaps = 13/346 (3%) Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + E + +R++ + ++ +L +KY WA++ Y + NN W+P E+P+ DD + Sbjct: 8 LFNAEGDRDWGKRRIIGGNTTNMIELNNIKYEWAYKLYRAMMNNFWIPEEIPLADDARQY 67 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + L+DDER + L F +SL+ +N+ I +++ PE L AF+EAVHS Sbjct: 68 ---DLLSDDERRSYNKVLSFLIFMDSLLTHNL-PNINEYITAPEVNLCLTVHAFQEAVHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ Y++ S+ R+ + + L + F ++ L Sbjct: 124 QSYGYVLDSVVNP------ATRDQIYNEWRNDDHLLRRNQFITDLFEEFIENPTDRNLMK 177 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY GF LGR KM+G + ++I RDE HL ++ ++I E Sbjct: 178 TIVANYILEGVYFYAGFGFFFVLGRQGKMLGTVSEIKFIQRDELTHLAIFRNLYHEIVRE 237 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP + T + +++ M+ A EIA+ VGL + Y++++AN R + Sbjct: 238 NPGIVTPDMEEEFVEMMRTAVQHEIAWGQYVTQGKIVGLTDALIDAYIKYLANLRLQSLN 297 Query: 309 LEPLFK-YTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 L L+ E+P PWM + +FFE RVT Y + L WD Sbjct: 298 LPILYPEIKEHPMPWMDSFAAINSHKTDFFEQRVTNYTKAGNLNWD 343 >gi|149194868|ref|ZP_01871962.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2] gi|149135027|gb|EDM23509.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2] Length = 346 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 91/325 (28%), Positives = 152/325 (46%), Gaps = 11/325 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 + L L Y WA+ + N W P EV + +D ++ L E+ M + Sbjct: 24 GCTEGIINLNKLSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMYDKA 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 L +S+ NN + ++ PE L+RQAFEEA+HS ++ ++ S+ L+ E+ Sbjct: 81 LSQLIFMDSIQTNNTPDHVNPWITAPEVNMCLVRQAFEEALHSQSYAVMVDSISLNTDEI 140 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 + M+R ++ K + + + + D E + V EG++FY GF Sbjct: 141 YEMWRADENLRKKNEFIGNVYEEWGIKAL-----NGDDEAKIYMIVANQALEGIYFYNGF 195 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A L RA KM+G A+ ++I RDE H ++ +IK E P L+T E + + ML Sbjct: 196 AAFYVLARAGKMLGSAQMIRFIQRDEVTHTLLFANIFKEIKKEFPDLFTPEVIRNIKDML 255 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWM 323 + A LE + +GL+ +++ +++AN+R H +GLE LF +NP W Sbjct: 256 YAAYELERDWGFYITNDEILGLSKELIDRFTKYLANKRAHAMGLELLFPEIGLKNPISWF 315 Query: 324 SEVIDLKK-EKNFFETRVTEYQQGA 347 + + NFFE V Y +G+ Sbjct: 316 DSFSSFNEQKTNFFEGNVVNYSKGS 340 >gi|268678691|ref|YP_003303122.1| ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum DSM 6946] gi|268616722|gb|ACZ11087.1| Ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum DSM 6946] Length = 340 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 87/347 (25%), Positives = 155/347 (44%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I +++D+++ + KY WA + + N W P EV D+ Sbjct: 4 KKIYNPNSDESLNDRKVFGGNPHGILNFTKAKYTWALKLWDMMEGNTWFPKEVDTTKDVI 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + LTD E+ M S +S NN+ I +++ PE L RQA+EEA Sbjct: 64 DYNK--NLTDAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLSRQAYEEAN 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ ++ + ++ M + + K ++ + L+ D +E L Sbjct: 122 HSKSYAVMVEAMCDNTDLIYEMEKHDEVLRRKNDYISSVYEELAG--------DVTEEKL 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + EG++FY+GF I +L R +M+G A+ ++I RDE HL ++IN K Sbjct: 174 VLAMFANQILEGIYFYSGFTAIYALARTGRMLGSAQMIRFIQRDEITHLLLFQNMINTTK 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + K M +A LEI + +G E Y+ ++ + R Sbjct: 234 KERPDLFTDALKAKVYEMFQKAGDLEIEWGKYITQNQIMGFTDDIIETYIHYLVDDRLTA 293 Query: 307 IGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352 +G + L+ + +P W+ + ++ NFFE V+ Y +G+ L +D Sbjct: 294 VGFDKLYNAS-HPIKWVDDFSKFNDQKTNFFEGNVSNYSKGS-LSFD 338 >gi|313768143|ref|YP_004061574.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1] gi|312599750|gb|ADQ91771.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1] Length = 387 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 82/330 (24%), Positives = 147/330 (44%), Gaps = 29/330 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + + ML + P+++ W Y A ++W E+ D+ W N L+D+E Sbjct: 70 EESEPMLLPTLSRFTVFPIEHENLWTLYKKAQMSNWTAEEIDFSKDMDDW---NELSDNE 126 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + IK L FFA S+ +V NI + E R + Q+ E VH T+ +I Sbjct: 127 KHFIKYILAFFAGSDGIVFENINNNFADEIQLTEARSFYAYQSHNEMVHGETYSKLIDKY 186 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 + E F + +P I KA WA+++ + + + + Sbjct: 187 IKNSSEKKQLFEAIQTIPCIERKAKWAMKWFD--------------KKRPFAERLLAFAC 232 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F F I L + + G+ + I RDE +H F +++ N +K K Sbjct: 233 VEGIFFSGSFCAIFWLKKRGLLPGLCFSNELISRDEGMHQEFAVELFNMLK-------NK 285 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 Q ++ +A +E + + +P +G+N+ +Y++++A+R Q+G ++ Sbjct: 286 PSQNTIEEIIRDAVSIEKEFITDALPCSLIGMNSGKMSEYIEYVADRLSKQVGHNKIWN- 344 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 T+NPF +M E I L + NFFE RV +Y + Sbjct: 345 TKNPFDFM-ENISLDGKTNFFEKRVGDYGK 373 >gi|297736972|emb|CBI26173.3| unnamed protein product [Vitis vinifera] Length = 312 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 78/289 (26%), Positives = 128/289 (44%), Gaps = 29/289 (10%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + D+ W+S L++ E+ I L FFA+S+ +V N+ Sbjct: 1 MYKKAEASFWTAEEVDLSHDVQQWES---LSNSEKHFISHVLAFFAASDGIVLENLAARF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161 + PE R + Q E +HS + ++ + D E FN + + KA W Sbjct: 58 LHDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIESISCVAGKAKW 117 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 AL + Q+ + + + EG++F F I L + M G+ Sbjct: 118 ALDWIQS--------------STLFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLT 163 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I RDE LH +F + + ++ + P QK ++HEA +E + E +P Sbjct: 164 FSNELISRDEGLHCDFACLLYSLLQKQLPW-------QKVHHIVHEAVEIETQFVCEALP 216 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 +G+NA QY++F+A+R +G E + ENPF WM E I L+ Sbjct: 217 CALIGMNATLMSQYIKFVADRLLVALGYERKYNV-ENPFDWM-EFISLQ 263 >gi|224372455|ref|YP_002606827.1| ribonucleotide-diphosphate reductase subunit beta [Nautilia profundicola AmH] gi|223589410|gb|ACM93146.1| ribonucleoside-diphosphate reductase, beta subunit [Nautilia profundicola AmH] Length = 346 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 87/325 (26%), Positives = 152/325 (46%), Gaps = 11/325 (3%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 + L L Y WA+ + N W P EV + +D ++ L E+ M + Sbjct: 24 GCTEGIINLNKLSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMYDKA 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 L +S+ NN + ++ PE ++RQA+EEA+HS ++ ++ S+ L+ E+ Sbjct: 81 LSQLIFMDSIQTNNTPDHVNPWITAPEVNMCIVRQAYEEALHSQSYAVMVDSISLNTDEI 140 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 + M+R ++ K + + + + + D E + V EG++FY GF Sbjct: 141 YEMWRVDANLRKKNEFIGNVYEEWGTKAL-----NGDDEAKIYMIVANQCLEGIYFYNGF 195 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A L RA KM+G A+ ++I RDE H ++ +IK E P L+T E + + ML Sbjct: 196 ASFYVLARAGKMLGSAQMIRFIQRDEVTHTLLFANIFKEIKKEFPDLFTPEVIKNIKDML 255 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPFPWM 323 + A LE + +G++ +++ Q++AN+R +GL+ LF +NP W Sbjct: 256 YAAYELERDWGWYITNDEILGMSKELIDRFTQYLANKRAQAMGLDLLFPEVGLKNPISWF 315 Query: 324 SEVIDLKK-EKNFFETRVTEYQQGA 347 + + NFFE V Y +G+ Sbjct: 316 DGFSSFNEQKTNFFEGNVVNYSKGS 340 >gi|326792202|ref|YP_004310023.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427] gi|326542966|gb|ADZ84825.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427] Length = 342 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 86/336 (25%), Positives = 169/336 (50%), Gaps = 17/336 (5%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++M+N + ++ + +KY WA Y + NN W+P E+ + +D+ K LTD ER Sbjct: 16 QQMINGNTTNLREWNRIKYDWAQTLYRTMLNNFWIPEEIALNEDV---KGFPFLTDGERH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ + R+++ PE L QAF+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIIAFLNFLDSIQSENL-PHLSRYITAPEVASLLNIQAFQEEIHAQSYSYILDTVTN 131 Query: 141 D--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 ++++ +RE + + + + + ++ + + + + EG Sbjct: 132 PVTRDKIYDQWREDEELLKRNRFIADIYERFN--------EEPNDKNFLRAIMANYILEG 183 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++FY+GF+ +L R KM + ++YI RDE HL ++I ++K ENP L+T+ Sbjct: 184 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLVVFQNIIKELKKENPELFTESMI 243 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317 ++ R M+ EIA+ +G+N + Y+++++N+R IGLE L+ T Sbjct: 244 EEFREMMRVGVEHEIAWGQYVTANEIMGINDQLIDAYIKYLSNQRLKAIGLEELYPEITT 303 Query: 318 NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +P W+ L + +FFE +VT Y + A +D Sbjct: 304 HPMAWIDSFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339 >gi|190570498|ref|YP_001974856.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019257|ref|ZP_03335064.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356770|emb|CAQ54129.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995366|gb|EEB56007.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 329 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 88/314 (28%), Positives = 152/314 (48%), Gaps = 13/314 (4%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF ++ Sbjct: 11 KPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSNVEKNLLTQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K + L+ F K + + L VF EG+ + FA +L+ R Sbjct: 128 MRKKYEYMLE---------FEESKKQDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + RDE+LH N I++ N EN +W EF+++ + LE Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEELYSACRTIVELEDE 238 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V L+A Y+++IANRR Q+GL+ ++ +NP PW+ E+++ + Sbjct: 239 FISLAFDLGDVEGLSAEEVRNYIRYIANRRLTQLGLKSIYNVKDNPIPWLDEILNGVEHT 298 Query: 334 NFFETRVTEYQQGA 347 NFFE RVTEY + A Sbjct: 299 NFFENRVTEYSRAA 312 >gi|253582918|ref|ZP_04860136.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium varium ATCC 27725] gi|251835124|gb|EES63667.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium varium ATCC 27725] Length = 348 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 88/359 (24%), Positives = 163/359 (45%), Gaps = 20/359 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + ++ +R++ +++ L +KY WA + Y + N W+P ++ Sbjct: 1 MKAAVDRKKLFNPLGDDSLSKRRIIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +K+ LTD E+ L F +S+ NNI + +++ PE L Sbjct: 61 DLTQDKNDYKN---LTDQEKEAYDGILSFLIFLDSIQTNNI-PNVCDYITAPEINLILSI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 Q F+EA+HS ++QYII S+ E R + + L + + + Sbjct: 117 QTFQEAIHSQSYQYIIESILPKE------IRNSIYDKWREDKILFERNKYIAEMYQRFLE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + + E + V + E ++FY GF L N+M+G ++ + I RDE H+ Sbjct: 171 NPNDENFSKVIVADYLLEAIYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVIFQ 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 ++ +I+ ENP + E + M +A EI + + + +G+ + EQY +++ Sbjct: 231 HLLKEIRNENPDFFNDE---EIYDMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWL 287 Query: 300 ANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 AN R IGL+P++ +NP+ +++ D + + NFFE VT Y + + WD Sbjct: 288 ANERLRSIGLKPIYDGFNKNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 346 >gi|226950223|ref|YP_002805314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A2 str. Kyoto] gi|226843961|gb|ACO86627.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A2 str. Kyoto] Length = 342 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 86/334 (25%), Positives = 167/334 (50%), Gaps = 13/334 (3%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENL-PNISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + R+ + + L + + K+ + + + + EG++ Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIY 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF+ +L R KM + ++YI RDE HL ++I ++K ENPH++T+E +++ Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENPHIFTEELEEE 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319 R M+ EI + +GLN E+Y+++++N R IGL+PL+ + ++P Sbjct: 246 FRQMMRIGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYLEINKHP 305 Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ L + +FFE +VT Y + A +D Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339 >gi|170761039|ref|YP_001788131.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A3 str. Loch Maree] gi|169408028|gb|ACA56439.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A3 str. Loch Maree] Length = 342 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 85/334 (25%), Positives = 164/334 (49%), Gaps = 13/334 (3%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENL-PNISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + R+ + + L + + K+ + + + EG++ Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIY 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF+ +L R KM + ++YI RDE HL ++I ++K EN H++T+E +++ Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 R M+ EI + +GLN E+Y+++++N R IGL+PL+ ++P Sbjct: 246 FRQMMRMGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYPEINKHP 305 Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ L + +FFE +VT Y + A +D Sbjct: 306 MEWIDGFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339 >gi|94495782|ref|ZP_01302361.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58] gi|94424474|gb|EAT09496.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58] Length = 350 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 79/316 (25%), Positives = 148/316 (46%), Gaps = 17/316 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA+E + HW+P EVP+ +D W L+D ER ++ + FF + Sbjct: 9 VYKPFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + R E + L + E VH + +++ ++G+ E E ++ + + Sbjct: 67 DVEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQY 125 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ Q D D++ + L +F EG+ + FA +++ Sbjct: 126 KEMKDKHDYLQQ------------FGVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFP 173 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NKM G+ + + +RDE+LH + + + E L T + M + +E Sbjct: 174 RFNKMKGMGQIVSWSVRDETLHCEGIVRLFHAFVKERDCL-TASVKDDIMDMCQKTVRIE 232 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ G V + ++Y+++IA+ R Q+GL+P++ E+P PW++ +++ + Sbjct: 233 DAFVDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292 Query: 332 EKNFFETRVTEYQQGA 347 NFFETR TEY + A Sbjct: 293 HANFFETRSTEYSKAA 308 >gi|153940168|ref|YP_001392091.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum F str. Langeland] gi|170756361|ref|YP_001782419.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum B1 str. Okra] gi|152936064|gb|ABS41562.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum F str. Langeland] gi|169121573|gb|ACA45409.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum B1 str. Okra] gi|322807123|emb|CBZ04697.1| ribonucleotide reductase of class Ia (aerobic),beta subunit [Clostridium botulinum H04402 065] Length = 342 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 85/334 (25%), Positives = 164/334 (49%), Gaps = 13/334 (3%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENL-PNISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + R+ + + L + + K+ + + + EG++ Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIY 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF+ +L R KM + ++YI RDE HL ++I ++K EN H++T+E +++ Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 R M+ EI + +GLN E+Y+++++N R IGL+PL+ ++P Sbjct: 246 FRQMMRMGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYPEINKHP 305 Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ L + +FFE +VT Y + A +D Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339 >gi|160881347|ref|YP_001560315.1| ribonucleoside-diphosphate reductase [Clostridium phytofermentans ISDg] gi|160430013|gb|ABX43576.1| Ribonucleoside-diphosphate reductase [Clostridium phytofermentans ISDg] Length = 342 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 83/333 (24%), Positives = 167/333 (50%), Gaps = 16/333 (4%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 + +++ + +KY WA Y + NN W+P E+ +Q+D+ + LTD ER Sbjct: 19 IKGNTTNLREWNRIKYDWARLIYRTMLNNFWIPEEISLQEDVKQF---PYLTDGERNAFD 75 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 + + F +S+ + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++ Sbjct: 76 KIIAFLNFLDSIQSENL-PNISRYITAPEVSSLLNVQAFQEEIHAQSYSYILDTVTNPVT 134 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 +++++RE + + + Q S + E + + EG++F Sbjct: 135 RDRIYDIWREDKYLLERNKFIANIYQRFSD--------EPSDENFVRVVFANYILEGIYF 186 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF+ +L R KM + ++YI RDE HL +++ ++++E ++TK +++ Sbjct: 187 YSGFSFFYTLARQGKMTATSTIFKYINRDEITHLVLFQNIMKELRVEQKEMFTKGLEEEL 246 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPF 320 R M+ EIA+ +G+N +QY+++++N+R +GLE L+ T++P Sbjct: 247 REMMRTGVEHEIAWGQYVTDNQILGINNELIDQYIKYLSNQRLRAVGLEILYPEITKHPM 306 Query: 321 PWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ ++ + +FFE +VT Y + A +D Sbjct: 307 EWIESFSNINSTKTDFFEAKVTNYTKAAVFDFD 339 >gi|28493649|ref|NP_787810.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma whipplei str. Twist] gi|28572842|ref|NP_789622.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma whipplei TW08/27] gi|28410975|emb|CAD67360.1| ribonucleotide-diphosphate reductase small chain [Tropheryma whipplei TW08/27] gi|28476691|gb|AAO44779.1| ribonucleotide reductase beta chain [Tropheryma whipplei str. Twist] Length = 327 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 176/310 (56%), Gaps = 4/310 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P++Y WA + Y A N W P E+ + +D+A +K +T +E+ + + +F +E Sbjct: 14 LKPVRYQWAMDLYEQAVANTWFPNEIQLGEDIADFK---KMTHEEKHAVTFLMSYFNPNE 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ PEC YL +Q +EEA H +F+Y++ + +D E ++ + EVP Sbjct: 71 LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREEAYSSHIEVP 130 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + ++Y + ++ + T + ++F+++L + VV EG+WFY+GF L + Sbjct: 131 SMARKEEFEVEYIRRMTEETLDITTTEGKRDFIRNLVAYNVVLEGIWFYSGFMAALYFRQ 190 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +I+RDESLHL FGI++I + ENP L T +F + R M+ +E Sbjct: 191 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPDLQTSDFADEIRGMIIAGVEMEE 250 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y H+ +P G +GLN+ QY++++A+RR ++G +P + T NP WM+ D + Sbjct: 251 EYNHDLLPNGILGLNSGYINQYVKYLADRRLEELGFDPEYNVT-NPAKWMATANDTFELV 309 Query: 334 NFFETRVTEY 343 NFFE T Y Sbjct: 310 NFFEAINTSY 319 >gi|88607783|ref|YP_505152.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma phagocytophilum HZ] gi|88598846|gb|ABD44316.1| ribonucleoside-diphosphate reductase, beta subunit [Anaplasma phagocytophilum HZ] Length = 323 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 154/322 (47%), Gaps = 14/322 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF + Sbjct: 9 VYKPFDYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTM--LSEKEKNLLVQIFRFFTQA 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + E L + E +H + Y++ ++G+ E E + + + Sbjct: 67 DIEVNNCYMKHYSNIFRPTEICMMLSAFSNMETIHVAAYSYLLDTIGMPEVE-YQAFLKF 125 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ + F + + + L VF EG+ + FA +L+ Sbjct: 126 EVMKKKYDYMQR---------FEECRRGDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQ 176 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R KM G+ + + RDESLH + I + N EN +W + +Q+ +LE Sbjct: 177 RFGKMKGMGQIIAWSARDESLHTDSIIRLFNTFVHENGEIWDDDLKQELYDACKVIVMLE 236 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 + G V L+A ++Y++FIANRR Q+ LEP++ ENP PW+ E+++ + Sbjct: 237 DEFIDLAFALGDVEGLSACEVKRYIRFIANRRLKQLHLEPIYDVAENPLPWLDEILNGVE 296 Query: 332 EKNFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY + A E W+ Sbjct: 297 HTNFFENRVTEYARAATEGTWE 318 >gi|56416698|ref|YP_153772.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. St. Maries] gi|254994906|ref|ZP_05277096.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. Mississippi] gi|255003042|ref|ZP_05278006.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. Puerto Rico] gi|255004164|ref|ZP_05278965.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma marginale str. Virginia] gi|56387930|gb|AAV86517.1| ribonuceoside-diphosphate reductase beta chain [Anaplasma marginale str. St. Maries] Length = 324 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 151/324 (46%), Gaps = 14/324 (4%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF Sbjct: 7 RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKT--KLSEQEKNLLVQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V N + E L + E VH + Y++ ++G+ E E + + Sbjct: 65 QADIEVNNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFL 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + K ++ + F K + + L VF EG+ + FA +L+ Sbjct: 124 KFEVMKKKYDYMQR---------FEESRKGDKRHVAKTLAVFGAFTEGLQLFASFAILLN 174 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 R KM G+ + + RDE+LH I + N EN +W + +++ Sbjct: 175 FQRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDENLREELYGACRVIVS 234 Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 LE + G V L+A ++Y+++IANRR Q+ LEP++ NP PW+ E+++ Sbjct: 235 LEDEFIDLAFALGDVEGLSAAEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNG 294 Query: 330 KKEKNFFETRVTEYQQGA-ELKWD 352 + NFFE RVTEY + A E WD Sbjct: 295 VEHTNFFENRVTEYSRAATEGTWD 318 >gi|322510501|gb|ADX05815.1| putative ribonucleotide reductase small subunit [Organic Lake phycodnavirus 1] Length = 324 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 28/327 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + + P+ W+ Y + W E+ DL W N L +E+ Sbjct: 6 NEPLLTEDDNRFVMFPIVDEAIWKMYKKQVDCFWRAEEIDTSKDLNHW---NKLQPEEQY 62 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FFASS+ +V N+ L + E R + Q E +HS T+ +I S Sbjct: 63 YIKMILAFFASSDGIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDSYIK 122 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 DE E F+ P I K WA+++ + V + E Sbjct: 123 DENEKNKLFHSLEHFPCIEKKGKWAMKWIND-------------KKSNFSTRLVAFACVE 169 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L + M G+ + I RDE+LH F + + ++++ + +E Sbjct: 170 GIFFSGAFCSIYWLKKRGIMPGLTFSNELISRDEALHTEFAVHLFHKLEKKINKKKIREI 229 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + EA ++E + E++P +G+N+ QY++++A+R Q+G E ++ T Sbjct: 230 IE-------EAVVIEKEFIVESLPCRLIGMNSDLMTQYIEYVADRLMIQLGCEEIY-RTN 281 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQ 344 NPF +M E+I L+++ NFFE+RV+EY Sbjct: 282 NPFDFM-ELISLEQKTNFFESRVSEYS 307 >gi|222475064|ref|YP_002563479.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma marginale str. Florida] gi|222419200|gb|ACM49223.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma marginale str. Florida] Length = 343 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 151/324 (46%), Gaps = 14/324 (4%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF Sbjct: 26 RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKT--KLSEQEKNLLVQIFRFFT 83 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V N + E L + E VH + Y++ ++G+ E E + + Sbjct: 84 QADIEVNNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFL 142 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + K ++ + F K + + L VF EG+ + FA +L+ Sbjct: 143 KFEVMKKKYDYMQR---------FEESRKGDKRHVAKTLAVFGAFTEGLQLFASFAILLN 193 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 R KM G+ + + RDE+LH I + N EN +W + +++ Sbjct: 194 FQRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDENLREELYGACRVIVS 253 Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 LE + G V L+A ++Y+++IANRR Q+ LEP++ NP PW+ E+++ Sbjct: 254 LEDEFIDLAFALGDVEGLSAAEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNG 313 Query: 330 KKEKNFFETRVTEYQQGA-ELKWD 352 + NFFE RVTEY + A E WD Sbjct: 314 VEHTNFFENRVTEYSRAATEGTWD 337 >gi|148380773|ref|YP_001255314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. ATCC 3502] gi|153932443|ref|YP_001385057.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. ATCC 19397] gi|153934989|ref|YP_001388527.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. Hall] gi|148290257|emb|CAL84376.1| ribonucleoside-diphosphate reductase beta chain [Clostridium botulinum A str. ATCC 3502] gi|152928487|gb|ABS33987.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. ATCC 19397] gi|152930903|gb|ABS36402.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum A str. Hall] Length = 342 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 85/334 (25%), Positives = 164/334 (49%), Gaps = 13/334 (3%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENL-PNISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + R+ + + L + + K+ + + + EG++ Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIY 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF+ +L R KM + ++YI RDE HL ++I ++K EN H++T+E +++ Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENLHIFTEELEEE 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 R M+ EI + +GLN E+Y+++++N R IGL+PL+ ++P Sbjct: 246 FRQMMRMGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYPEINKHP 305 Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ L + +FFE +VT Y + A +D Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339 >gi|269958883|ref|YP_003328672.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma centrale str. Israel] gi|269848714|gb|ACZ49358.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma centrale str. Israel] Length = 332 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 149/324 (45%), Gaps = 14/324 (4%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF Sbjct: 15 RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKT--KLSEQEKNLLVQIFRFFT 72 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V N + E L + E VH + Y++ ++G+ E E + + Sbjct: 73 QADIEVNNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFL 131 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + K ++ + F K + + L VF EG+ + FA +L+ Sbjct: 132 KFEVMKKKYDYMQR---------FEESRKGDKRHVAKTLAVFGAFTEGLQLFASFAILLN 182 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 R KM G+ + + RDE+LH I + N EN +W + + Sbjct: 183 FQRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDANLRAELYGACRVIVS 242 Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 LE + G V L+A ++Y+++IANRR Q+ LEP++ NP PW+ E+++ Sbjct: 243 LEDEFIDLAFALGDVEGLSASEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNG 302 Query: 330 KKEKNFFETRVTEYQQGA-ELKWD 352 + NFFE RVTEY + A E WD Sbjct: 303 VEHTNFFENRVTEYSRAATEGTWD 326 >gi|317062933|ref|ZP_07927418.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium ulcerans ATCC 49185] gi|313688609|gb|EFS25444.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium ulcerans ATCC 49185] Length = 353 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 85/352 (24%), Positives = 164/352 (46%), Gaps = 20/352 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + ++ +R++ +++ L +KY WA + Y + N W+P ++ + D Sbjct: 13 KKLFNPLGDDSLSKRRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKIDLTQDKN 72 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +K+ LTD E+ L F +S+ NNI + +++ PE L Q F+EA+ Sbjct: 73 DYKN---LTDQEKEAYDGILSFLIFLDSIQTNNI-PNVCDYITAPEINLILSIQTFQEAI 128 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++QYII S+ E R + + L + + ++ + + Sbjct: 129 HSQSYQYIIESILPKE------IRNSIYDKWREDKILFERNKYIAEMYQKFLEEPNDKNF 182 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + E ++FY GF L N+M+G ++ + I RDE H+ ++ +I+ Sbjct: 183 SKVIIADYLLEAIYFYNGFNFFYLLASRNRMMGTSDVIRLINRDELSHVVIFQHLLKEIR 242 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 ENP + E + +M +A EI + + + +G+ + EQY +++AN R Sbjct: 243 NENPDFFNDE---EIYSMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWLANERLRS 299 Query: 307 IGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 IGL+P+++ +NP+ +++ D + + NFFE VT Y + + WD Sbjct: 300 IGLKPIYEGFNKNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 351 >gi|168184457|ref|ZP_02619121.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum Bf] gi|237796249|ref|YP_002863801.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium botulinum Ba4 str. 657] gi|182672468|gb|EDT84429.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum Bf] gi|229263158|gb|ACQ54191.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum Ba4 str. 657] Length = 342 Score = 264 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 85/334 (25%), Positives = 166/334 (49%), Gaps = 13/334 (3%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENL-PNISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + R+ + + L + + K+ + + + + EG++ Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIY 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF+ +L R KM + ++YI RDE HL ++I ++K EN H++T+E +++ Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319 R M+ EI + +GLN E+Y+++++N R IGL+PL+ + ++P Sbjct: 246 FRQMMRIGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYLEINKHP 305 Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ L + +FFE +VT Y + A +D Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339 >gi|42520108|ref|NP_966023.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia endosymbiont of Drosophila melanogaster] gi|58696705|ref|ZP_00372253.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58698234|ref|ZP_00373154.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|225630036|ref|YP_002726827.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp. wRi] gi|42409845|gb|AAS13957.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|58535261|gb|EAL59340.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58537117|gb|EAL60231.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila simulans] gi|225592017|gb|ACN95036.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp. wRi] Length = 329 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 88/314 (28%), Positives = 150/314 (47%), Gaps = 13/314 (4%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA++ +L HW+P EVP+ DD+ WK+ L+ E+ ++ + FF ++ Sbjct: 11 KPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSSVEKNLLTQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K + L+ F K + + L VF EG+ + FA +L+ R Sbjct: 128 MRKKYEYMLE---------FEESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + RDE+LH N I + N EN +W EF+++ + LE Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELEDE 238 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V L+A Y++++ANRR Q+GLE ++ +NP PW+ E+++ + Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEHT 298 Query: 334 NFFETRVTEYQQGA 347 NFFE RVTEY + A Sbjct: 299 NFFENRVTEYSRAA 312 >gi|168179222|ref|ZP_02613886.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum NCTC 2916] gi|182669722|gb|EDT81698.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum NCTC 2916] Length = 342 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 84/334 (25%), Positives = 165/334 (49%), Gaps = 13/334 (3%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENL-PNISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + R+ + + L + + K+ + + + + EG++ Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIY 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF+ +L R K+ + ++YI RDE HL ++I ++K EN H++T+E +++ Sbjct: 186 FYSGFSFFYTLARQGKLTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 R M+ EI + +GLN E+Y+++++N R IGL+PL+ ++P Sbjct: 246 FRQMMRIGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYPEINKHP 305 Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ L + +FFE +VT Y + A +D Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339 >gi|225677302|ref|ZP_03788281.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590665|gb|EEH11913.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 329 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 88/314 (28%), Positives = 149/314 (47%), Gaps = 13/314 (4%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA++ +L HW+P EVP+ DD+ WK+ L+ E+ ++ + FF ++ Sbjct: 11 KPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSSVEKNLLTQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K + L+ F K + + L VF EG+ + FA +L+ R Sbjct: 128 MRKKYEYMLE---------FEESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + RDE+LH N I + N EN +W EF+++ + LE Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDDEFKEELYSACRTIVELEDE 238 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V L+A Y+ ++ANRR Q+GLE ++ +NP PW+ E+++ + Sbjct: 239 FIKLAFDFGDVEGLSAEEVRNYIHYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEHT 298 Query: 334 NFFETRVTEYQQGA 347 NFFE RVTEY + A Sbjct: 299 NFFENRVTEYSRAA 312 >gi|294013210|ref|YP_003546670.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium japonicum UT26S] gi|292676540|dbj|BAI98058.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium japonicum UT26S] Length = 351 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 79/316 (25%), Positives = 148/316 (46%), Gaps = 17/316 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA+E + HW+P EVP+ +D W L+D ER ++ + FF + Sbjct: 9 VYKPFEYPWAYEFWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + R E + L + E VH + +++ ++G+ E E ++ + + Sbjct: 67 DVEVQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQY 125 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ Q D D++ + L +F EG+ + FA +++ Sbjct: 126 KEMKDKHDYLQQ------------FGVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFP 173 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NKM G+ + + +RDE+LH + + + E L T + M + +E Sbjct: 174 RFNKMKGMGQIVSWSVRDETLHCEGIVRLFHAFVKERDCL-TASVKDDIMDMCQKTVRIE 232 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ G V + ++Y+++IA+ R Q+GL+P++ E+P PW++ +++ + Sbjct: 233 DAFVDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292 Query: 332 EKNFFETRVTEYQQGA 347 NFFETR TEY + A Sbjct: 293 HANFFETRATEYSKAA 308 >gi|307295356|ref|ZP_07575195.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum L-1] gi|306878859|gb|EFN10078.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum L-1] Length = 351 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 148/316 (46%), Gaps = 17/316 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA+E + HW+P EVP+ +D W L+D ER ++ + FF + Sbjct: 9 VYKPFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + R E + L + E VH + +++ ++G+ E E ++ + + Sbjct: 67 DVEVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFMQY 125 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ Q D D++ + L +F EG+ + FA +++ Sbjct: 126 KEMKDKHDYLAQ------------FGVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFP 173 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NKM G+ + + +RDE+LH I + + E L T + M + +E Sbjct: 174 RFNKMKGMGQIVSWSVRDETLHCEGIIRLFHAFVKERDCL-TASVKDDIMDMCQKTVRIE 232 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ G V + ++Y+++IA+ R Q+GL+P++ E+P PW++ +++ + Sbjct: 233 DAFIDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292 Query: 332 EKNFFETRVTEYQQGA 347 NFFETR TEY + A Sbjct: 293 HANFFETRATEYSKAA 308 >gi|122921307|pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (Pv086155) gi|122921308|pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (Pv086155) Length = 311 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 78/313 (24%), Positives = 145/313 (46%), Gaps = 28/313 (8%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 ++ ++++L+ +D L P+ Y W+ Y A + W E+ + DL ++ L Sbjct: 23 QKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE---KL 79 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D+E+ IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ + Sbjct: 80 NDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLL 139 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + DE E F+ +P++ KA WA ++ D + V Sbjct: 140 IDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWIN--------------DTNSFAERIV 185 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 EG+ F F I + NK+ G+ + I RDE LH +F + + ++ + P Sbjct: 186 ANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE 245 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G Sbjct: 246 -------EVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPK 298 Query: 312 LFKYTENPFPWMS 324 +F + +NPF WM Sbjct: 299 IF-HAKNPFNWMD 310 >gi|257468678|ref|ZP_05632772.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium ulcerans ATCC 49185] Length = 348 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 86/359 (23%), Positives = 165/359 (45%), Gaps = 20/359 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + ++ +R++ +++ L +KY WA + Y + N W+P ++ Sbjct: 1 MKAVVDRKKLFNPLGDDSLSKRRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKI 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +K+ LTD E+ L F +S+ NNI + +++ PE L Sbjct: 61 DLTQDKNDYKN---LTDQEKEAYDGILSFLIFLDSIQTNNI-PNVCDYITAPEINLILSI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 Q F+EA+HS ++QYII S+ E R + + L + + + Sbjct: 117 QTFQEAIHSQSYQYIIESILPKE------IRNSIYDKWREDKILFERNKYIAEMYQKFLE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + + + + + + E ++FY GF L N+M+G ++ + I RDE H+ Sbjct: 171 EPNDKNFSKVIIADYLLEAIYFYNGFNFFYLLASRNRMMGTSDVIRLINRDELSHVVIFQ 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 ++ +I+ ENP + E + +M +A EI + + + +G+ + EQY +++ Sbjct: 231 HLLKEIRNENPDFFNDE---EIYSMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKWL 287 Query: 300 ANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 AN R IGL+P+++ +NP+ +++ D + + NFFE VT Y + + WD Sbjct: 288 ANERLRSIGLKPIYEGFNKNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 346 >gi|296282225|ref|ZP_06860223.1| ribonucleotide-diphosphate reductase subunit beta [Citromicrobium bathyomarinum JL354] Length = 354 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 82/318 (25%), Positives = 151/318 (47%), Gaps = 17/318 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y WA++ + HWMP EVP+ +D W L++ ER ++ + FF Sbjct: 7 RKTYKPFEYPWAYDFWKRQQQVHWMPEEVPLGEDCRDWAQ--KLSEHERNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V + R E + L + E +H + +++ ++G+ E E + M+ Sbjct: 65 QADVEVQDCYHEKYGRVFKPTEIKMMLASFSNMETIHIAAYSHLLDTIGMPESE-YGMFL 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + K ++ Q D D++ + L F EGM + FA +++ Sbjct: 124 EYEEMKDKHDYLQQ------------FGVDTDEDIARTLAAFGGFTEGMQLFASFAMLMN 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 R NKM G+ + + +RDESLH I + ++ E +TK ++ + ++ Sbjct: 172 FPRFNKMKGMGQIVSWSVRDESLHCEGIIRLFHEFVRER-DCYTKAVKEDIIDICQKSVR 230 Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 LE + G V + A ++Y+++IA+ R Q+GL+P++ E+P PW++ +++ Sbjct: 231 LEDNFIDLAFEMGPVSGMTAKEIKKYIRYIADWRLGQLGLQPIYMIDEHPLPWLTPLLNG 290 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFE R TEY +GA Sbjct: 291 VEHANFFEQRATEYSKGA 308 >gi|256027986|ref|ZP_05441820.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp. D11] Length = 348 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 160/349 (45%), Gaps = 19/349 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 8 KKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 67 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 68 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAIQTFQEAI 123 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++QYII S+ + R++ + + L + + + + E Sbjct: 124 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 177 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + E ++FY GF L NKMVG ++ + I RDE H+ ++ +IK Sbjct: 178 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIK 237 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 + P+ ++ E +M A EIA+ + +G+ + + E Y +++AN R Sbjct: 238 NDFPNFFSAET---VYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 294 Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 +GLEPLF + +NP+ + D + + NFFE VT Y + + Sbjct: 295 LGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343 >gi|99036000|ref|ZP_01315041.1| hypothetical protein Wendoof_01000112 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 329 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 88/314 (28%), Positives = 150/314 (47%), Gaps = 13/314 (4%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA++ +L HW+P EVP+ DD+ WK+ L+ E+ ++ + FF ++ Sbjct: 11 KPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSSVEKNLLTQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K + L+ F K + + L VF EG+ + FA +L+ R Sbjct: 128 MRKKYEYMLE---------FEESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + RDE+LH N I + N EN +W EF+++ + LE Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELEDE 238 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V L+A Y++++ANRR Q+GLE ++ +NP PW+ E+++ + Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYVANRRLMQLGLESIYDVNDNPTPWLDEILNGVEHT 298 Query: 334 NFFETRVTEYQQGA 347 NFFE RVTEY + A Sbjct: 299 NFFENRVTEYSRAA 312 >gi|114568952|ref|YP_755632.1| ribonucleotide-diphosphate reductase subunit beta [Maricaulis maris MCS10] gi|114339414|gb|ABI64694.1| Ribonucleoside-diphosphate reductase [Maricaulis maris MCS10] Length = 345 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 147/314 (46%), Gaps = 17/314 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y WA++ + HWMP EVP+ +D W + L D ER ++ + FF S+ Sbjct: 19 KPFRYPWAYDFWKKQQQVHWMPEEVPLGEDCKDWAT--KLNDGERNLLTQIFRFFTQSDV 76 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V +N + R E + L + E +H + ++ ++G+ + E F+ + E + Sbjct: 77 EVNDNYMERYSRVFRPTEVKMMLASFSNMETIHIAAYALLLETIGMPDSE-FSAFMEYQA 135 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ + + + + L+ + +F EG+ + FA +++ R Sbjct: 136 MADKHDYMQR------------FGVEDEADILRTVAMFGAFTEGLQLFASFAMLMNFPRF 183 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDESLH I + + E L T+E + LE Sbjct: 184 NKMKGMGQIVTWSIRDESLHCEGMIKLFHAFAEETGAL-TQEVKDDITECCRTVVGLEDK 242 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V + + Y+++IA+ R Q+GL ++ E+P PW+SE+++ + Sbjct: 243 FIDLAFEAGDVEGMTPDDIKTYIRYIADWRLGQLGLPKIYGVKEHPLPWLSEILNGVEHA 302 Query: 334 NFFETRVTEYQQGA 347 NFFE R TEY +GA Sbjct: 303 NFFEARATEYSKGA 316 >gi|254455551|ref|ZP_05068980.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207082553|gb|EDZ59979.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 335 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 149/316 (47%), Gaps = 16/316 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y W ++ +L+ HW+P EVP+ DD+ W+ L+ E+ ++ + FF + Sbjct: 25 VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLSQSEKNLLTQIFRFFTQA 82 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + E + A E VH + +++ ++G+ E E ++ + + Sbjct: 83 DVEVNNCYLRHYTTVFKPTEVLMMMTAFAAMETVHVAAYSHLLDTIGMPESE-YSAFMKY 141 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ ++ ++ + + VF EG+ + FA +L+ Sbjct: 142 KEMKDKYDYM------------QDFNVNSKEDIAKTVAVFSAFTEGLQLFASFAILLNFP 189 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NKM G+ + + +RDE+LH N I + + ENP +WT + +++ E Sbjct: 190 RHNKMKGMGQIVTWSVRDETLHCNSMIRIFKEFINENPEIWTPKLKKELYEACRTIIAHE 249 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ G GL A + Y++FI NRR Q+GLEP++ +NP W+ +++ + Sbjct: 250 DAFIDLAFEMGPMEGLTAQEVKDYIRFIGNRRLTQLGLEPIYDVDKNPLGWLDTMLNAVE 309 Query: 332 EKNFFETRVTEYQQGA 347 NFFE R TEY + + Sbjct: 310 HMNFFEGRATEYSKAS 325 >gi|329847182|ref|ZP_08262210.1| ribonucleotide reductase, small chain family protein [Asticcacaulis biprosthecum C19] gi|328842245|gb|EGF91814.1| ribonucleotide reductase, small chain family protein [Asticcacaulis biprosthecum C19] Length = 352 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 83/315 (26%), Positives = 141/315 (44%), Gaps = 18/315 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y WA+E + HW+P EVP+ +D W S L+D ER ++ + FF S+ Sbjct: 22 KPFRYPWAFEYWRKQQQVHWIPEEVPLGEDCKDWAS--KLSDSERNLLTQIFRFFTQSDI 79 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V +N + R E + L A E +H + ++ ++G+ E E F + + + Sbjct: 80 EVQDNYLERYGRVFKPTEIKMMLSAFANMETIHIAAYALLLETIGMPESE-FGAFMDYEA 138 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ T D + + L+ L +F EG+ + FA +++ R Sbjct: 139 MRDKHDFM------------GTFGVDTEADVLRTLAMFGGFTEGLQLFASFAMLMNFPRF 186 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDESLH I + + E L TK Q +E Sbjct: 187 NKMKGMGQIVSWSVRDESLHCEGIIKLYHAFAKETKAL-TKSVQDDIIDCCKTVVTMEDK 245 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKE 332 + G V + + Y+++IA+ R Q+ L ++ ENP PW+ ++ + Sbjct: 246 FIDLAFEMGPVQGMTPDDIKAYIRYIADWRLRQLNLPEVYGGVKENPLPWLQVLLSGVEH 305 Query: 333 KNFFETRVTEYQQGA 347 NFFE R TEY + A Sbjct: 306 ANFFEARATEYSKAA 320 >gi|86149605|ref|ZP_01067835.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151167|ref|ZP_01069382.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|86153704|ref|ZP_01071907.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597173|ref|ZP_01100408.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|121613260|ref|YP_999944.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni 81-176] gi|157414529|ref|YP_001481785.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni 81116] gi|167004901|ref|ZP_02270659.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni 81-176] gi|218561895|ref|YP_002343674.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283955655|ref|ZP_06373148.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 1336] gi|315123818|ref|YP_004065822.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85839873|gb|EAQ57132.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841514|gb|EAQ58761.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85842665|gb|EAQ59877.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|87250215|gb|EAQ73173.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|88190234|gb|EAQ94208.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112359601|emb|CAL34386.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|157385493|gb|ABV51808.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni 81116] gi|283792880|gb|EFC31656.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 1336] gi|284925507|gb|ADC27859.1| ribonucleoside-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni IA3902] gi|307747171|gb|ADN90441.1| Ribonucleoside-diphosphate reductase subunit beta [Campylobacter jejuni subsp. jejuni M1] gi|315017540|gb|ADT65633.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315928159|gb|EFV07477.1| ribonucleotide reductase, small chain family protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315932030|gb|EFV10983.1| ribonucleotide reductase, small chain family protein [Campylobacter jejuni subsp. jejuni 327] Length = 340 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 14/345 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 RC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ ++ ++ + ++ M + ++ K ++ + L+ D D L Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNKLLL 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+ E K M +A LEI + +G E+Y+ ++ ++R I Sbjct: 236 RPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLSAIN 295 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 L+ L+ ++P W+ + +K NFFE++VT Y +G+ + +D Sbjct: 296 LDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338 >gi|215401283|ref|YP_002332587.1| ribonucleotide reductase small subunit [Helicoverpa armigera multiple nucleopolyhedrovirus] gi|198448783|gb|ACH88573.1| ribonucleotide reductase small subunit [Helicoverpa armigera multiple nucleopolyhedrovirus] Length = 313 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 84/324 (25%), Positives = 146/324 (45%), Gaps = 26/324 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+ + +E Y A W EV + D ++ L +D+R I LGFF+ Sbjct: 5 RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147 +++S+V N++ + + + E + QA E VH+ + +I +L D+ + N Sbjct: 63 AADSIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +P + K +WAL++T+ + L + V + + EG++F FA Sbjct: 123 AFDNIPCVRKKDDWALKWTKN-------------KKLTLAERLVAFAIVEGVFFSGSFAA 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 I + M G+ + I RDE +H +F N E K + M E Sbjct: 170 IFYIKTLGIMPGLTFSNELISRDEGMHTDFACLYYNTRVNE------KLSYETILDMFKE 223 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A +E + + +P +G+NA +Y++F+A+R Q+G + NPFP+M+ I Sbjct: 224 AVDIEKEFFTDALPVALLGMNADMMCEYIEFVADRLLLQLGQPKYYNAR-NPFPFMNN-I 281 Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351 L+ + NFFE RV EY+ Sbjct: 282 SLEGKTNFFERRVGEYKMFGTGSD 305 >gi|283955349|ref|ZP_06372848.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 414] gi|283793109|gb|EFC31879.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. jejuni 414] Length = 340 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 160/345 (46%), Gaps = 14/345 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S +NN+ I +++ PE L RQA+EEA HS Sbjct: 66 RC--NLTAGEKRMYDLVWSQLISMDSFQSNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ ++ ++ + ++ M + ++ K ++ + L+ D D L Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNKLLL 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+ E K M +A LEI + +G E+Y+ ++ ++R I Sbjct: 236 RPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLSAIN 295 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 L+ L+ ++P W+ + +K NFFE++VT Y +G+ + +D Sbjct: 296 LDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338 >gi|57505748|ref|ZP_00371674.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter upsaliensis RM3195] gi|57016021|gb|EAL52809.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter upsaliensis RM3195] Length = 340 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 161/345 (46%), Gaps = 14/345 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I ++ D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPNSNESLSDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTRDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 RC--HLTAAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ ++ ++ + ++ M + ++ K ++ + L+ D D L Sbjct: 124 KSYAVMVETICDNTDLIYEMEKHDATLREKNDFISGIYEELAG--------DVDDNKLLL 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+ ++ K +M A LEI + +G E+Y+ ++ ++R I Sbjct: 236 RPDLFNEQNIDKIYSMFKRAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLIAIN 295 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 L+ ++ ++P W+ + +K NFFE++VT Y +G+ + +D Sbjct: 296 LDKIYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338 >gi|254303614|ref|ZP_04970972.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323806|gb|EDK89056.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 344 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 88/349 (25%), Positives = 160/349 (45%), Gaps = 19/349 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + E ++ +R++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++QYII S+ + R++ + + L + + + + E Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + E ++FY GF L NKMVG ++ + I RDE H+ ++ +IK Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIK 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 + P+ ++ E +M A EIA+ + +G+ + + E Y +++AN R Sbjct: 234 NDFPNFFSAET---IYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290 Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 +GLEPLF + +NP+ + D + + NFFE VT Y + + Sbjct: 291 LGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339 >gi|148273612|ref|YP_001223173.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170782700|ref|YP_001711034.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter michiganensis subsp. sepedonicus] gi|147831542|emb|CAN02508.1| putative ribonucleoside-diphosphate reductase beta subunit [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157270|emb|CAQ02455.1| ribonucleoside-diphosphate reductase beta subunit [Clavibacter michiganensis subsp. sepedonicus] Length = 331 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 181/315 (57%), Gaps = 4/315 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA + Y A N W P E+ + +D+A +K +TD+ER I + +F +E Sbjct: 15 LKPVNYQWAMDLYDQAVANTWFPNEIQLGEDIADFK---KMTDEERHAITFLMSYFNPNE 71 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ PEC YL +Q +EEA H +F+Y++ + +D +N + ++P Sbjct: 72 LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHVDIP 131 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + +++ + ++ + T + ++F+++L + V+ EG+WFY+GF LS + Sbjct: 132 SMARKEEFEVKFIKRMTEQTLDITTTEGKKDFVRNLVAYNVILEGIWFYSGFMVSLSFRQ 191 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +I+RDESLHL FGI++I + ENP L T+EF + + M+ +A +E Sbjct: 192 RNLLRNFGSLMDWIVRDESLHLKFGINLILTVLEENPDLQTEEFAAEIKQMILDAVEMEE 251 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P G +GLNA QY++++A+RR ++G E +K + NP WM+ D + Sbjct: 252 QYNRDLLPNGILGLNANYINQYVKYLADRRLEELGFEAEYKVS-NPAKWMATANDTLQLV 310 Query: 334 NFFETRVTEYQQGAE 348 NFFE+ T Y+ A Sbjct: 311 NFFESTNTSYESNAS 325 >gi|205356539|ref|ZP_03223302.1| ribonucleoside diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8421] gi|205345544|gb|EDZ32184.1| ribonucleoside diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8421] Length = 340 Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 14/345 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPSSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 RC--NLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ ++ ++ + ++ M + ++ K ++ + L+ D D L Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNKLLL 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+ E K M +A LEI + +G E+Y+ ++ ++R I Sbjct: 236 RPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLSAIN 295 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 L+ L+ ++P W+ + +K NFFE++VT Y +G+ + +D Sbjct: 296 LDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338 >gi|154250961|ref|YP_001411785.1| ribonucleotide-diphosphate reductase subunit beta [Parvibaculum lavamentivorans DS-1] gi|154154911|gb|ABS62128.1| Ribonucleoside-diphosphate reductase [Parvibaculum lavamentivorans DS-1] Length = 319 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 83/319 (26%), Positives = 154/319 (48%), Gaps = 16/319 (5%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + + P +Y WA+E +L+ HW+P EVP+ DD+ W LT+ ER ++ + FF Sbjct: 6 ERHVYKPFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWSK--KLTEGERNLLTQIFRFF 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++ V N + R E + L + E VH + +++ ++G+ E E + + Sbjct: 64 VQADVEVNNCYMKHYSRVFKPTEVQMMLAAFSNIETVHISAYSHLLDTIGMPEAE-YEAF 122 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 + + K ++ ++ + + + L VF EG+ + FA ++ Sbjct: 123 LKYEQMKTKFDYMQEW------------GVETKADIAKTLAVFGGFTEGVQLFASFAILM 170 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + R NKM G+ + + RDE+LH + + ENP +WT+E ++ Sbjct: 171 NFPRFNKMKGMGQIVTWSARDETLHTVSAMKLFRTFVDENPEIWTEELRRDIYKACETII 230 Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328 E A+ G + L+A + Y+++IA+RR Q+ L+P+++ +NP PWM E+++ Sbjct: 231 HHEDAFIDLAFEMGSIEGLSAQEVKNYIRYIADRRLVQLNLQPIYRTEKNPLPWMDEMLN 290 Query: 329 LKKEKNFFETRVTEYQQGA 347 + NFFE R TEY + + Sbjct: 291 GIEHTNFFENRATEYSKAS 309 >gi|329888543|ref|ZP_08267141.1| ribonucleotide reductase, small chain family protein [Brevundimonas diminuta ATCC 11568] gi|328847099|gb|EGF96661.1| ribonucleotide reductase, small chain family protein [Brevundimonas diminuta ATCC 11568] Length = 348 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 139/314 (44%), Gaps = 17/314 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y WA++ + HWMP EVPM +D+ W L D ER ++ + FF ++ Sbjct: 23 KPFRYPWAFDMWKKQQQVHWMPEEVPMGEDVKDWA--ANLNDGERNLLTQIFRFFTQADI 80 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V +N + R E + L A E +H + ++ ++G+ E E F + E + Sbjct: 81 EVQDNYMERYGRVFKPTEVKMMLAAFANMETIHIAAYALLLETIGMPESE-FGAFMEYEA 139 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ Q D+D + + L +F EG+ + FA +++ R Sbjct: 140 MKDKHDYMGQ------------FGVDSDADICRTLAMFGGFSEGLQLFASFAMLMNFPRQ 187 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 +KM G+ + + +RDESLH I + + E TK +E Sbjct: 188 SKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETG-AVTKAVADDIVDCCKTVIEMEDK 246 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V + + Y++FIA+ R Q+ L ++ TENP PW+ ++ + Sbjct: 247 FIDLAFEMGPVNGMTPDDIKAYIRFIADWRLRQLHLPEVYGVTENPLPWLQALLSGVEHA 306 Query: 334 NFFETRVTEYQQGA 347 NFFE R TEY + A Sbjct: 307 NFFEARATEYSKAA 320 >gi|50955339|ref|YP_062627.1| ribonucleotide-diphosphate reductase subunit beta [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951821|gb|AAT89522.1| ribonucleoside-diphosphate reductase, beta chain [Leifsonia xyli subsp. xyli str. CTCB07] Length = 329 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 103/317 (32%), Positives = 182/317 (57%), Gaps = 4/317 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+KY WA + Y A N W P E+ + +D+A +K +TD+ER + + +F +E Sbjct: 14 LKPVKYQWAMDLYDQAVANTWFPNEIQIGEDIADFK---KMTDEERHAVTFLMSYFNPNE 70 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ E YL +Q +EEA H +F+Y++ + +D + +N + +VP Sbjct: 71 LLVNKALAFGVYPYINAAEAHLYLAKQMWEEANHCMSFEYVLETFPIDREQAYNSHVDVP 130 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ +K + +++ + ++ + T + Q+F+++L + V+ EG+WFY+GF LS + Sbjct: 131 SMASKEEFEVRFIKRMTEQALDITTTEGKQDFIRNLIAYNVILEGIWFYSGFMVALSFRQ 190 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FGI++I + ENP L T EF + + M+ +A +E Sbjct: 191 RNLLRNFGSLIDWVVRDESLHLKFGINLILTVLEENPDLQTPEFAAEIKQMILDAVEMEE 250 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P G +GLNA QY++++A+RR ++G E +K + NP WM+ D + Sbjct: 251 QYNRDLLPGGILGLNANYINQYVKYLADRRLEELGFEAEYKVS-NPAKWMATANDTLELV 309 Query: 334 NFFETRVTEYQQGAELK 350 NFFE+ T Y+ A+ Sbjct: 310 NFFESTNTSYESNAKAS 326 >gi|153952438|ref|YP_001397460.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni subsp. doylei 269.97] gi|152939884|gb|ABS44625.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 340 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 158/347 (45%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + D+++ + + KY WA + + N W P EV D Sbjct: 4 KKIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDAL 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ LT E+ M S +S NN+ I +++ PE L RQA+EEA Sbjct: 64 DYRC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEAN 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ ++ + ++ M + ++ K ++ + L+ D D L Sbjct: 122 HSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNKL 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN + Sbjct: 174 LLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVH 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+ E K M +A LEI + +G E+Y+ ++ ++R Sbjct: 234 KERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLSA 293 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 I L+ L+ ++P W+ + +K NFFE++VT Y +G+ + +D Sbjct: 294 INLDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338 >gi|157825769|ref|YP_001493489.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari str. Hartford] gi|157799727|gb|ABV74981.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari str. Hartford] Length = 327 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 87/320 (27%), Positives = 149/320 (46%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA+ + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 11 KPFSYPWAYTAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + R E L + E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ Q D ++ L VF EG+ + FA +L+ R Sbjct: 128 MKDKYDYIQQ------------FGVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDE+LH N I + ENP +WT+ +++ E A Sbjct: 176 NKMKGMGQIISWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFEDA 235 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ + Sbjct: 236 FIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEHT 295 Query: 334 NFFETRVTEYQQGAEL-KWD 352 NFFE R TEY + A W+ Sbjct: 296 NFFENRATEYSKAATTGSWE 315 >gi|19703451|ref|NP_603013.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19713529|gb|AAL94312.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 348 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 87/356 (24%), Positives = 160/356 (44%), Gaps = 19/356 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + E ++ ++++ +++ L ++Y WA + Y + N W+P +V Sbjct: 1 MKAAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +++ LT ER L F +S+ NNI I H++ PE L Sbjct: 61 DLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 Q F+EA+HS ++QYII S+ + R++ + + L + + + Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFID 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + E + + + E ++FY GF L NKMVG ++ + I RDE H+ Sbjct: 171 EQSDENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 ++ +IK + P+ ++ E +M A EI + + +G+ + + E Y +++ Sbjct: 231 SMVKEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWL 287 Query: 300 ANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 AN R +GLEPLF + +NP+ + D + + NFFE VT Y + + Sbjct: 288 ANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343 >gi|289765931|ref|ZP_06525309.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D11] gi|289717486|gb|EFD81498.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D11] Length = 344 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 160/349 (45%), Gaps = 19/349 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++QYII S+ + R++ + + L + + + + E Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + E ++FY GF L NKMVG ++ + I RDE H+ ++ +IK Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIK 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 + P+ ++ E +M A EIA+ + +G+ + + E Y +++AN R Sbjct: 234 NDFPNFFSAET---VYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290 Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 +GLEPLF + +NP+ + D + + NFFE VT Y + + Sbjct: 291 LGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339 >gi|157964544|ref|YP_001499368.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia massiliae MTU5] gi|157844320|gb|ABV84821.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia massiliae MTU5] Length = 336 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 89/320 (27%), Positives = 151/320 (47%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 12 KPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 69 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + R E L + E VH + +++ ++G+ E E ++ + + Sbjct: 70 EVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 128 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ Q DA ++ L VF EG+ + FA +L+ R Sbjct: 129 MKDKYDYMQQ------------FGVDAKEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 176 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDE+LH N I + ENP +WT+ +++ E A Sbjct: 177 NKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFEDA 236 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ + Sbjct: 237 FIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEHT 296 Query: 334 NFFETRVTEYQQGAEL-KWD 352 NFFE R TEY + A W+ Sbjct: 297 NFFENRATEYSKAATTGSWE 316 >gi|85375147|ref|YP_459209.1| ribonucleotide-diphosphate reductase subunit beta [Erythrobacter litoralis HTCC2594] gi|84788230|gb|ABC64412.1| ribonucleotide reductase beta subunit [Erythrobacter litoralis HTCC2594] Length = 356 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 79/318 (24%), Positives = 150/318 (47%), Gaps = 17/318 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y WA++ + HWMP EVP+ +D W +T+ ER ++ + FF Sbjct: 7 RKTYKPFEYPWAYDFWKRQQQIHWMPEEVPLGEDCRDWAQ--KITEHERNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V + R E + L + E VH + +++ ++G+ E E ++ + Sbjct: 65 QADVEVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + K ++ D D++ + L VF EGM + FA +++ Sbjct: 124 EYEEMKDKHDYL------------QLFGVDTDEDIARTLAVFGGFTEGMQLFASFAMLMN 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 R NKM G+ + + +RDESLH + + ++ E +TK ++ + ++ Sbjct: 172 FPRFNKMKGMGQIVSWSVRDESLHCEGIVRLFHEFVRER-DCYTKAVKEDIIDICQKSVR 230 Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 LE + G V + ++Y+++IA+ R Q+GL+P++ ++P PW++ +++ Sbjct: 231 LEDNFIDLAFEMGPVSGMTPKEIKKYIRYIADWRLGQLGLQPIYMVDDHPLPWLAPLLNG 290 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFE R TEY +GA Sbjct: 291 VEHANFFEQRATEYSKGA 308 >gi|296329016|ref|ZP_06871523.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153909|gb|EFG94720.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 348 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 87/356 (24%), Positives = 160/356 (44%), Gaps = 19/356 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + E ++ ++++ +++ L ++Y WA + Y + N W+P +V Sbjct: 1 MKAAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +++ LT ER L F +S+ NNI I H++ PE L Sbjct: 61 DLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 Q F+EA+HS ++QYII S+ + R++ + + L + + + Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFID 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + E + + + E ++FY GF L NKMVG ++ + I RDE H+ Sbjct: 171 EQSDENFAKIIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 ++ +IK + P+ ++ E +M A EI + + +G+ + + E Y +++ Sbjct: 231 SMVKEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWL 287 Query: 300 ANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 AN R +GLEPLF + +NP+ + D + + NFFE VT Y + + Sbjct: 288 ANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343 >gi|291461082|ref|ZP_06026838.2| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium periodonticum ATCC 33693] gi|291379059|gb|EFE86577.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium periodonticum ATCC 33693] Length = 348 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 86/356 (24%), Positives = 159/356 (44%), Gaps = 19/356 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + E ++ ++++ +++ L ++Y WA + Y + N W+P +V Sbjct: 1 MKAVVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +++ LT ER L F +S+ NNI I H++ PE L Sbjct: 61 DLTQDKNDYEN---LTLPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNMLLAI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 Q F+EA+HS ++QYII S+ + R++ + + L + + + Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFID 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + E + + + E ++FY GF L NKMVG ++ + I RDE H+ Sbjct: 171 EQSDENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFR 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 ++ +IK + P ++ E +M A EI + + +G+ + + E Y +++ Sbjct: 231 SIVKEIKNDYPEFFSAET---IYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTKWL 287 Query: 300 ANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 AN R +GLEPL+ + +NP+ + D + + NFFE VT Y + + Sbjct: 288 ANERLKSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343 >gi|260497963|ref|ZP_05816079.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_33] gi|260196471|gb|EEW94002.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_33] Length = 344 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 160/349 (45%), Gaps = 19/349 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISEHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++QYII S+ + R++ + + L + + + + E Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + E ++FY GF L NKMVG ++ + I RDE H+ ++ +IK Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIK 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 + P+ ++ E +M A EIA+ + +G+ + + E Y +++AN R Sbjct: 234 NDFPNFFSAET---VYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290 Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 +GLEPLF + +NP+ + D + + NFFE VT Y + + Sbjct: 291 LGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339 >gi|239947951|ref|ZP_04699704.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239922227|gb|EER22251.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 327 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 89/320 (27%), Positives = 151/320 (47%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 11 KPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + R E L + E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ Q D ++ L VF EG+ + FA +L+ R Sbjct: 128 MKDKYDYMQQ------------FGVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDE+LH N I + IENP +WT+ +++ E A Sbjct: 176 NKMKGMGQIIAWSVRDETLHTNSIITLFKTFVIENPEVWTETLRKRIYEACTTIVHFEDA 235 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ + Sbjct: 236 FIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEHT 295 Query: 334 NFFETRVTEYQQGAEL-KWD 352 NFFE R TEY + A W+ Sbjct: 296 NFFENRATEYSKAATTGSWE 315 >gi|57168357|ref|ZP_00367491.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter coli RM2228] gi|305432773|ref|ZP_07401932.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter coli JV20] gi|57020165|gb|EAL56839.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter coli RM2228] gi|304444170|gb|EFM36824.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter coli JV20] Length = 340 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 159/345 (46%), Gaps = 14/345 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPGSNETLTDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 RC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ ++ ++ + ++ M + ++ K ++ + L+ D D L Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNKLLL 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+ + K M +A LEI + +G E+Y+ ++ ++R I Sbjct: 236 RPDLFNENNINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLVAIN 295 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 L+ ++ ++P W+ + +K NFFE++VT Y +G+ + +D Sbjct: 296 LDKIYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338 >gi|58584525|ref|YP_198098.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418841|gb|AAW70856.1| Ribonucleotide reductase, beta subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 331 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 89/314 (28%), Positives = 150/314 (47%), Gaps = 13/314 (4%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA++ +L HW+P EVP+ DD+ WK L + E+ ++ + FF ++ Sbjct: 11 KPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWK--IKLLNVEKNLLTQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + E L + E +H + Y++ ++G+ E E + + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDA 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K + L+ F K + + L VF EG+ + FA +L+ R Sbjct: 128 MRKKYEYMLE---------FEESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + RDE+LH N I++ N EN +W EF++ + LE Sbjct: 179 GKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEGLYSACRTIVGLEDE 238 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V L+A Y+++IANRR Q+GL+P++ +NP PW+ E+++ + Sbjct: 239 FIKLAFDLGDVEGLSAEEVRNYIRYIANRRLMQLGLKPIYDINDNPLPWLDEILNGVEHT 298 Query: 334 NFFETRVTEYQQGA 347 NFFE RVTEY + A Sbjct: 299 NFFENRVTEYSRAA 312 >gi|57237291|ref|YP_178304.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter jejuni RM1221] gi|148926379|ref|ZP_01810063.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8486] gi|57166095|gb|AAW34874.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter jejuni RM1221] gi|145844771|gb|EDK21876.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter jejuni subsp. jejuni CG8486] gi|315057661|gb|ADT71990.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Campylobacter jejuni subsp. jejuni S3] Length = 340 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 14/345 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPNSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 RC--NLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ ++ ++ + ++ M + ++ K ++ + L+ D D L Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNKLLL 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+ E K M +A LEI + +G E+Y+ ++ ++R I Sbjct: 236 RPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLSAIN 295 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 L+ L+ ++P W+ + +K NFFE++VT Y +G+ + +D Sbjct: 296 LDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338 >gi|148554425|ref|YP_001262007.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas wittichii RW1] gi|148499615|gb|ABQ67869.1| Ribonucleoside-diphosphate reductase [Sphingomonas wittichii RW1] Length = 350 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 79/314 (25%), Positives = 149/314 (47%), Gaps = 17/314 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y WA+E + HW+P EVP+ +D W LTD ER ++ + FF ++ Sbjct: 11 KPFEYPWAFEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLTDHERNLLTQIFRFFTQADV 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V + R E + L + E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQYKE 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ +T D D++ + L +F EG+ + FA +++ R Sbjct: 128 MKDKHDYL------------STFGVDTDEDIARTLAMFGGFTEGLQLFASFAMLMNFPRF 175 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDE+LH + + + E L T + M + +E A Sbjct: 176 NKMKGMGQIVTWSIRDETLHCEGIVRLFHAFVKERDCL-TASVKDDILDMCQKTVRIEDA 234 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V + ++Y+++IA+ R Q+GL+P++ ++P PW++ +++ + Sbjct: 235 FIDLVFEMGPVNGMTPKDIKKYVRYIADWRLGQLGLKPIYMIEDHPLPWLAPLLNGVEHA 294 Query: 334 NFFETRVTEYQQGA 347 NFFETR TEY + A Sbjct: 295 NFFETRATEYSKAA 308 >gi|295691241|ref|YP_003594934.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC 21756] gi|295433144|gb|ADG12316.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC 21756] Length = 346 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 140/314 (44%), Gaps = 17/314 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y WA++ + HWMP EVP+ +DL W L D ER ++ + FF S+ Sbjct: 20 KPFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSDV 77 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V +N + R E + L A E +H + ++ ++G+ E E F+ + E + Sbjct: 78 EVQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYEA 136 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ T D++ + + L +F EG+ + FA +++ R Sbjct: 137 MKDKHDYM------------QTFGVDSNADICRTLAMFGGFTEGLQLFASFAMLMNFPRF 184 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDESLH + I + + E TK LE Sbjct: 185 NKMKGMGQIVSWSIRDESLHCDGIIKLYHAFNKETG-AVTKAVADDIVDCCKHVVGLEDK 243 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + + + Y++FIA+ R Q+ L ++ ENP PW+ ++ + Sbjct: 244 FIDLAFEAGEIQGMTPDDIKSYIRFIADWRLRQLQLPEVYGVKENPLPWLQSLLSGVEHA 303 Query: 334 NFFETRVTEYQQGA 347 NFFE R TEY + A Sbjct: 304 NFFEARATEYSKAA 317 >gi|254418345|ref|ZP_05032069.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas sp. BAL3] gi|196184522|gb|EDX79498.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas sp. BAL3] Length = 349 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 140/314 (44%), Gaps = 17/314 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y WA++ + HWMP EVP+ +D+ W S L D+ER ++ + FF ++ Sbjct: 23 KPFRYPWAFDMWKKQQQVHWMPEEVPLGEDVKDWAS--TLNDNERNLLTQIFRFFTQADI 80 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V +N + R E + L E +H + ++ ++G+ E E F + E + Sbjct: 81 EVQDNYMERYGRVFKPTEIKMMLAAFGNMETIHIAAYALLLETIGMPESE-FGAFMEYEA 139 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ Q D+D + + L +F EG+ + FA +++ R Sbjct: 140 MRDKHDYMGQ------------FGVDSDADICRTLAMFGGFSEGVQLFASFAMLMNFPRQ 187 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDESLH I + + E TK +E Sbjct: 188 NKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETG-AVTKAVADDIVDCCKTVVNMEDR 246 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V + +QY++FIA+ R Q+ L ++ ENP PW+ ++ + Sbjct: 247 FIDLAFEMGSVQGMTPEDIKQYIRFIADWRLRQLKLPEVYGVKENPLPWLQSLLSGVEHA 306 Query: 334 NFFETRVTEYQQGA 347 NFFE R TEY + A Sbjct: 307 NFFEARATEYSKAA 320 >gi|257467364|ref|ZP_05631675.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium gonidiaformans ATCC 25563] gi|315918494|ref|ZP_07914734.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium gonidiaformans ATCC 25563] gi|313692369|gb|EFS29204.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium gonidiaformans ATCC 25563] Length = 344 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 20/350 (5%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + E ++ ++R++ +++ L +K+ WA + Y + N W+P +V + D + Sbjct: 6 LFNPEGNDSLLERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQDKNDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ LT ER L F +S+ NN V I +++ PE L Q F+EA+HS Sbjct: 66 EN---LTVPEREAYDGILSFLIFLDSIQTNN-VPNISDYVTAPEVNLLLSIQTFQEAIHS 121 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++QYII S+ E R++ + + L + + ++A + Sbjct: 122 QSYQYIIESILPKES------RDLIYDKWRDDKILFERNRFIAQIYQDFIEEASDKNFAK 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + V + E ++FY GF L NKMVG ++ + I RDE H+ +I +IK E Sbjct: 176 VLVANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKIIREIKAE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP+ + +E + R M A EI + + +G+ + E Y +++AN R IG Sbjct: 236 NPNFFQEE---EIRMMFQTAVEQEILWTEHIIGNRVLGITTETTEAYTKWLANERLRTIG 292 Query: 309 LEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 L P++ T+NP+ + D + + NFFE VT Y + + WD Sbjct: 293 LAPMYDGFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342 >gi|149185037|ref|ZP_01863354.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21] gi|148831148|gb|EDL49582.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21] Length = 352 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 83/318 (26%), Positives = 149/318 (46%), Gaps = 17/318 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y WA+E + HWMP EVP+ +D W LT+ ER ++ + FF Sbjct: 7 RKTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQ--KLTEHERNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V + R E + L + E VH + +++ ++G+ E E ++ + Sbjct: 65 QADVEVQDCYHDKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + K N+ Q D D++ + L +F EGM + FA +++ Sbjct: 124 DYEEMADKHNYMQQ------------FGVDNDEDIARTLAMFGAFTEGMQLFASFAMLMN 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 R NKM G+ + + +RDESLH I + ++ E L TK ++ + + Sbjct: 172 FPRFNKMKGMGQIVSWSIRDESLHCEGIIRMFHEFVRERDCL-TKAVKEDIIDICQKTVR 230 Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 LE + G V + ++Y+++IA+ R Q+ L+P++ ++P PW++ +I+ Sbjct: 231 LEDNFIDLAFEMGPVSGMTPKDIKKYIRYIADWRLGQLNLDPIYMVDDHPLPWLAPLING 290 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFE R TEY +GA Sbjct: 291 VEHANFFEQRATEYSKGA 308 >gi|87198296|ref|YP_495553.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium aromaticivorans DSM 12444] gi|87133977|gb|ABD24719.1| Ribonucleoside-diphosphate reductase [Novosphingobium aromaticivorans DSM 12444] Length = 351 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 83/318 (26%), Positives = 151/318 (47%), Gaps = 17/318 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 N P +Y WA+E + HWMP EVP+ +D W +++ ER ++ + FF Sbjct: 7 RNTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQ--KISEHERNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V N R E + L + E VH + +++ ++G+ E E + M+ Sbjct: 65 QADVEVQNCYHEQYGRVFKPTEVKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YGMFL 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + AK ++ T + D++ + L +F EG+ + FA +++ Sbjct: 124 EYEELKAKHDYL------------QTFGVETDEDIARTLAMFGGFTEGLQLFASFAMLMN 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 R NKM G+ + + +RDESLH + + E L TK ++ + Sbjct: 172 FPRFNKMKGMGQIVSWSVRDESLHCEGITRLFHAFVKERGCL-TKAVKEDIIDCCQKTVR 230 Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 LE A+ +G V ++A ++Y+++IA+ R Q+GL ++ ++P PW++ +++ Sbjct: 231 LEDAFIDLAFEQGPVPGMSAKEIKRYIRYIADWRLSQLGLPAIYMIEDHPLPWLAPLLNG 290 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFETR TEY + A Sbjct: 291 VEHANFFETRATEYSKAA 308 >gi|294784669|ref|ZP_06749957.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_27] gi|294486383|gb|EFG33745.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_27] Length = 344 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 19/349 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + E ++ +R++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++QYII S+ + R++ + + L + + + + E Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + E ++FY GF L NKMVG ++ + I RDE H+ ++ +IK Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIK 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 + P+ ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 234 NDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290 Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 +GLEPLF + +NP+ + D + + NFFE VT Y + + Sbjct: 291 LGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339 >gi|294782021|ref|ZP_06747353.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 1_1_41FAA] gi|294481832|gb|EFG29601.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 1_1_41FAA] Length = 344 Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 85/349 (24%), Positives = 158/349 (45%), Gaps = 19/349 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTLPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNMLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++QYII S+ + R++ + + L + + + + E Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + E ++FY GF L NKMVG ++ + I RDE H+ ++ +IK Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIK 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 + P ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 234 NDYPEFFSAET---IYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEVYTKWLANERLKS 290 Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 +GLEPL+ + +NP+ + D + + NFFE VT Y + + Sbjct: 291 LGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339 >gi|269963257|ref|ZP_06177590.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3] gi|269832005|gb|EEZ86131.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3] Length = 310 Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 89/328 (27%), Positives = 148/328 (45%), Gaps = 30/328 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + L P++Y W+ Y + W E+ DLA LT+ E+ I+ L FF Sbjct: 5 NKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLAD---LAKLTEGEKHFIRHVLAFF 61 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---F 146 A SE ++ N++ Y + E R +L QAF E +H+ T+ + + D E F Sbjct: 62 AQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERLF 121 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 N VP++ KA W +++ + + L + + + EG++F F Sbjct: 122 NAIENVPTVKRKAEWVMKWI--------------SSDKTLAMRLIAFGLVEGLFFAGSFC 167 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 I + + G+A I RDE LH +F + + K QQ+ + Sbjct: 168 AIYYFRKRGLLAGLAASNDLIARDEGLHFSFSALLFKTLGQG------KVTQQEFEEICR 221 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 EA +E + E +P +G+NA QY++ A+ G P+F ENPF +M + Sbjct: 222 EAVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIAGLFGFTPIFG-AENPFDYMR-L 279 Query: 327 IDLKKEKNFFETRVTEYQQGAE--LKWD 352 +D++ + NFFE RVTEY++ + L +D Sbjct: 280 LDMEGKTNFFEKRVTEYKRPQDRQLSFD 307 >gi|237738722|ref|ZP_04569203.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 2_1_31] gi|229423825|gb|EEO38872.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 2_1_31] Length = 344 Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 85/349 (24%), Positives = 158/349 (45%), Gaps = 19/349 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTLPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNMLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++QYII S+ + R++ + + L + + + + E Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + E ++FY GF L NKMVG ++ + I RDE H+ ++ +IK Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIVKEIK 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 + P ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 234 NDYPEFFSAET---IYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290 Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 +GLEPL+ + +NP+ + D + + NFFE VT Y + + Sbjct: 291 LGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339 >gi|222824493|ref|YP_002576067.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter lari RM2100] gi|222539714|gb|ACM64815.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter lari RM2100] Length = 340 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 159/345 (46%), Gaps = 14/345 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + ++D+++ N + KY WA + + N W P EV D + Sbjct: 6 IYNPKSNETLNDRKVFNGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 RC--NLTVAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ ++ ++ + ++ M + ++ K ++ + L+ + D L Sbjct: 124 KSYAVMVEAICENTDLIYEMEKHDETLREKNDFISSIYEELAG--------EVDDNKLLL 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 L+ K M +A LEI + +G E+Y+ ++ ++R I Sbjct: 236 RADLFNDTNVSKIYDMFKKAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLIAIN 295 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 L+ ++ ++P W+ + +K NFFE++VT Y +G+ L +D Sbjct: 296 LDKIYNV-KHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-LSFD 338 >gi|22549454|ref|NP_689227.1| putative ribonucleotide reductase small subunit-like protein [Mamestra configurata NPV-B] gi|22476633|gb|AAM95039.1| putative ribonucleotide reductase small subunit-like protein [Mamestra configurata NPV-B] Length = 313 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 83/324 (25%), Positives = 145/324 (44%), Gaps = 26/324 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+ + +E Y A W EV + D ++ L +D+R I LGFF+ Sbjct: 5 RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147 +++S+V N++ + + + E + QA E VH+ + +I +L D+ + N Sbjct: 63 AADSIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + + + K +WAL++T+ + L + V + + EG++F FA Sbjct: 123 AFDNISCVRKKDDWALKWTKN-------------KKLTLAERLVAFAIVEGVFFSGSFAA 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 I + M G+ + I RDE +H +F N E K + M E Sbjct: 170 IFYIKTLGIMPGLTFSNELISRDEGMHTDFACLYYNTRVNE------KLSYETILDMFKE 223 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A +E + + +P +G+NA +Y++F+A+R Q+G + NPFP+M+ I Sbjct: 224 AVDIEKEFFTDALPVALLGMNADMMCEYIEFVADRLLLQLGQPKYYNAR-NPFPFMNN-I 281 Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351 L+ + NFFE RV EY+ Sbjct: 282 SLEGKTNFFERRVGEYKMFGTGSD 305 >gi|257453171|ref|ZP_05618470.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp. 3_1_5R] gi|317059706|ref|ZP_07924191.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 3_1_5R] gi|313685382|gb|EFS22217.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 3_1_5R] Length = 344 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 20/350 (5%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + E ++ ++R++ +++ L +K+ WA + Y + N W+P +V + D + Sbjct: 6 LFNPEGNDSLLERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQDKNDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ LT ER L F +S+ NN V I +++ PE L Q F+EA+HS Sbjct: 66 EN---LTVPEREAYDGILSFLIFLDSIQTNN-VPNISDYVTAPEVNLLLSIQTFQEAIHS 121 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++QYII S+ E R++ + + L + + ++ Sbjct: 122 QSYQYIIESILPKES------RDLIYDKWRDDKILFERNRFIAQIYQDFIEETSDRNFAK 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + V + E ++FY GF L NKMVG ++ + I RDE H+ +I +IK E Sbjct: 176 VLVANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKIIREIKAE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 NP+ + +E + R M A EI + + +G+ + E Y +++AN R IG Sbjct: 236 NPNFFQEE---EIRMMFQTAVEQEILWTEHIIGNRVLGITTETTEAYTKWLANERLRTIG 292 Query: 309 LEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 L P++ T+NP+ + D + + NFFE VT Y + + WD Sbjct: 293 LAPMYDGFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342 >gi|20069937|ref|NP_613141.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A] gi|20043331|gb|AAM09166.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A] gi|33331769|gb|AAQ11077.1| putative ribonucleotide reductase small subunit-like protein [Mamestra configurata NPV-A] Length = 313 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 84/324 (25%), Positives = 144/324 (44%), Gaps = 26/324 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+ + +E Y A W EV + D ++ L +D+R I LGFF+ Sbjct: 5 RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFN 147 +++S+V N++ + + + E + QA E VH+ + +I L D + + N Sbjct: 63 AADSIVNINVLNYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIIELIPDKKHQDLILN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + VP + K +WAL++ + D+ + V + + EG++F FA Sbjct: 123 AFDNVPCVRKKDDWALKWI-------------ENDKATFAERLVAFAIVEGVFFSGSFAA 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 I + M G+ + I RDE +H +F N E K +K M E Sbjct: 170 IFYIKTLGIMPGLTFSNELISRDEGMHTDFACLYYNTRVKE------KLSYEKILDMFKE 223 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A +E + + +P +G+NA +Y++F+A+R Q+G + NPF +M+ I Sbjct: 224 AVDIEKEFFTDALPVSLLGMNATMMCEYIEFVADRLLMQLGQPKYYNAR-NPFSFMNN-I 281 Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351 L+ + NFFE RV EY+ Sbjct: 282 SLEGKTNFFERRVGEYKMFGTGSD 305 >gi|163801385|ref|ZP_02195284.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp. AND4] gi|159174874|gb|EDP59674.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp. AND4] Length = 310 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 88/328 (26%), Positives = 147/328 (44%), Gaps = 30/328 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + L P++Y W+ Y + W E+ DL LT+ E+ I+ L FF Sbjct: 5 NKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLPD---LVKLTEGEKHFIRHVLAFF 61 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---F 146 A SE ++ N++ Y + E R +L QAF E +H+ T+ + + D E F Sbjct: 62 AQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERLF 121 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 N VP++ KA W +++ + + L + + + EG++F F Sbjct: 122 NAIENVPTVQRKAQWVMKWI--------------SSDKPLAMRLIAFGLVEGLFFAGSFC 167 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 I + + G+A I RDE LH +F + + K QQ+ + Sbjct: 168 AIYYFRKRGLLAGLAASNDLIARDEGLHFSFSALLFKTLGQG------KVTQQEFEEICR 221 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 EA +E + E +P +G+NA QY++ A+ G P F +ENPF +M + Sbjct: 222 EAVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIADLFGFNPAFG-SENPFDYMR-L 279 Query: 327 IDLKKEKNFFETRVTEYQQGAE--LKWD 352 +D++ + NFFE RVTEY++ + L +D Sbjct: 280 LDMEGKTNFFEKRVTEYKRPQDRQLSFD 307 >gi|315497476|ref|YP_004086280.1| ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB 48] gi|315415488|gb|ADU12129.1| Ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB 48] Length = 350 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 85/314 (27%), Positives = 141/314 (44%), Gaps = 17/314 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y WA++ + HW+P EVP+ +D+ W S L D+ER ++ + FF S+ Sbjct: 22 KPFRYPWAFDFWQKQQQVHWLPEEVPLGEDVKDWAS--KLNDNERNLLTQIFRFFTQSDI 79 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V +N + R E + L A E VH + ++ ++G+ E E F + E + Sbjct: 80 EVQDNYMEKYGRVFKPTEIKMMLSAFANMETVHIAAYALLLETIGMPEAE-FGAFMEYEA 138 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K N+ + D D + + L +F EG+ + FA +++ R Sbjct: 139 MRDKHNFMQK------------FGVDTDADICRTLAMFGGFTEGLQLFASFAMLMNFPRF 186 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDESLH I + + E TK LE Sbjct: 187 NKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETG-AVTKAVADDIVDCCKTVVSLEDK 245 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + + G V + +QY+++IA+ R Q+ L +F ENP PW+ ++ + Sbjct: 246 FIDLSFEMGPVEGMTPDDIKQYIRYIADWRLRQLELPEVFGVQENPLPWLQVLLSGVEHA 305 Query: 334 NFFETRVTEYQQGA 347 NFFE R TEY + A Sbjct: 306 NFFEARATEYSKAA 319 >gi|302381236|ref|YP_003817059.1| ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides ATCC 15264] gi|302191864|gb|ADK99435.1| Ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides ATCC 15264] Length = 348 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 84/314 (26%), Positives = 140/314 (44%), Gaps = 17/314 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y WA++ + HWMP EVP+ +D W L D ER ++ + FF S+ Sbjct: 22 KPFRYPWAFDMWKKQQQVHWMPEEVPLGEDCKDWA--ANLNDKERNLLTQIFRFFTQSDI 79 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 VA+N + R E + L A E +H + ++ ++G+ E E F + E + Sbjct: 80 EVADNYMEKYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMEYEA 138 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ T D + + + L +F EG+ + FA +++ R Sbjct: 139 MRDKHDFM------------QTFGVDTEADIARTLAMFGGFTEGLQLFASFAMLMNFPRQ 186 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDESLH + I + + E + TK LE Sbjct: 187 NKMKGMGQIVSWSVRDESLHCDGIIKLYHAFNKETG-VVTKAVADDIVQCCETVVGLEDK 245 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + + +QY++FIA+ R Q+ L L+ ENP PW+ ++ + Sbjct: 246 FIDLAFEAGEINGMTPEDIKQYIRFIADWRLRQLKLPELYGVKENPLPWLQSLLSGVEHA 305 Query: 334 NFFETRVTEYQQGA 347 NFFE R TEY + A Sbjct: 306 NFFEARATEYSKAA 319 >gi|304321610|ref|YP_003855253.1| ribonucleoside-diphosphate reductase subunit beta [Parvularcula bermudensis HTCC2503] gi|303300512|gb|ADM10111.1| ribonucleoside-diphosphate reductase, beta subunit [Parvularcula bermudensis HTCC2503] Length = 340 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 83/314 (26%), Positives = 143/314 (45%), Gaps = 17/314 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y WA++ + HWMP EVP+ +D W N LTD ER ++ + FF S+ Sbjct: 19 KPFRYPWAYDYWKKQQQVHWMPEEVPLGEDCKDWA--NKLTDKERNLLTQIFRFFTQSDV 76 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + E R L + E +H + ++ ++G+ E E F+ + + + Sbjct: 77 EVGANYMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPEVE-FSAFMDYEA 135 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + AK ++ + + +++ L + VF EG+ + FA +++ R Sbjct: 136 MAAKHDYLGR------------FGVENERDILTSMAVFGGFTEGLQLFASFAMLMNFPRF 183 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDESLH + + ++ E L T LE Sbjct: 184 NKMKGMGQIVTWSIRDESLHCEGMVRLFHEFARETGAL-TPAVADDIVDCCKTVVDLEDK 242 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V + + Y++ IA+ R Q+GL P+F +P PW+ E+++ + Sbjct: 243 FIELAFEAGEVEGMTPDDIKAYIRHIADWRLSQLGLPPVFAADNHPLPWLREILNGVEHA 302 Query: 334 NFFETRVTEYQQGA 347 NFFE R TEY +GA Sbjct: 303 NFFEARATEYSKGA 316 >gi|254293199|ref|YP_003059222.1| ribonucleotide-diphosphate reductase subunit beta [Hirschia baltica ATCC 49814] gi|254041730|gb|ACT58525.1| Ribonucleoside-diphosphate reductase [Hirschia baltica ATCC 49814] Length = 345 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 83/319 (26%), Positives = 145/319 (45%), Gaps = 18/319 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y WA++ + HW+P EVP+ +D W L D ER ++ + FF S+ Sbjct: 20 KPFRYPWAYDFWKIQQQVHWVPEEVPLGEDCKDWA--GKLNDKERNLLTQIFRFFTQSDV 77 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + E R L + E VH + ++ ++G+ + E F+ + E Sbjct: 78 EVGANYMENYMPLFKPVEVRMMLAAFSNMETVHIAAYALLLETIGMPDSE-FSAFMEYEE 136 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + AK ++ + + D + + L + VF EG+ + FA +++ R Sbjct: 137 MAAKHDYLGK------------FSVDTEADILTSMAVFGGFTEGLQLFASFAMLMNFPRF 184 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDESLH + + + E L TK + LE Sbjct: 185 NKMKGMGQIVSWSVRDESLHCEGMMKMFHTYAEETGAL-TKTVKDDITDCCQTVVKLEDK 243 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V + + Y+++IA+ R Q+ L+P++ E+P PW++E+++ + Sbjct: 244 FIDLAFEAGEVEGMTPEDIKNYIRYIADWRLKQLKLDPVYGVDEHPIPWLTEILNGVEHA 303 Query: 334 NFFETRVTEYQQGA-ELKW 351 NFFE R TEY +GA W Sbjct: 304 NFFEARATEYSKGATAGDW 322 >gi|16124515|ref|NP_419079.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter crescentus CB15] gi|221233200|ref|YP_002515636.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter crescentus NA1000] gi|13421393|gb|AAK22247.1| ribonucleoside-diphosphate reductase, beta subunit [Caulobacter crescentus CB15] gi|220962372|gb|ACL93728.1| ribonucleoside-diphosphate reductase beta chain [Caulobacter crescentus NA1000] Length = 347 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 141/314 (44%), Gaps = 17/314 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y WA++ + HWMP EVP+ +DL W L D ER ++ + FF S+ Sbjct: 20 KPFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSDV 77 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V +N + R E + L A E +H + ++ ++G+ E E F+ + E + Sbjct: 78 EVQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYEA 136 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + AK ++ T D++ + + L +F EG+ + FA +++ R Sbjct: 137 MKAKHDYM------------QTFGVDSNADICRTLAMFGGFTEGLQLFASFAMLMNFPRF 184 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDESLH + I + + E TK +E Sbjct: 185 NKMKGMGQIVSWSIRDESLHCDGIIKLYHAFNKETG-AVTKAVADDIVDCCKTVVGMEDN 243 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + + + Y++F+A+ R Q+ L ++ ENP PW+ ++ + Sbjct: 244 FIDLAFEAGDIQGMTPDDIKAYIRFVADWRLRQLHLPEVYGVKENPLPWLQSLLSGVEHA 303 Query: 334 NFFETRVTEYQQGA 347 NFFE R TEY + A Sbjct: 304 NFFEARATEYSKAA 317 >gi|237742881|ref|ZP_04573362.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 4_1_13] gi|229430529|gb|EEO40741.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 4_1_13] Length = 344 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 85/349 (24%), Positives = 159/349 (45%), Gaps = 19/349 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++QYII S+ + R++ + + L + + + + E Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + E ++FY GF L NKMVG ++ + I RDE H+ ++ +IK Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIK 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 + P+ ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 234 NDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290 Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 +GLEPL+ + +NP+ + D + + NFFE VT Y + + Sbjct: 291 LGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339 >gi|237743586|ref|ZP_04574067.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 7_1] gi|229432617|gb|EEO42829.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. 7_1] Length = 344 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 86/349 (24%), Positives = 159/349 (45%), Gaps = 19/349 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++QYII S+ + R++ + + L + + + + E Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + E ++FY GF L NKMVG ++ + I RDE H+ ++ +IK Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIK 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 + P+ ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 234 NDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290 Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 +GLEPLF + +NP+ + D + + NFFE VT Y + + Sbjct: 291 LGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339 >gi|15892574|ref|NP_360288.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia conorii str. Malish 7] gi|34580440|ref|ZP_00141920.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia sibirica 246] gi|157828524|ref|YP_001494766.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933242|ref|YP_001650031.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia rickettsii str. Iowa] gi|229586746|ref|YP_002845247.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia africae ESF-5] gi|238650260|ref|YP_002916112.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia peacockii str. Rustic] gi|15619738|gb|AAL03189.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia conorii str. Malish 7] gi|28261825|gb|EAA25329.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia sibirica 246] gi|157801005|gb|ABV76258.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908329|gb|ABY72625.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia rickettsii str. Iowa] gi|228021796|gb|ACP53504.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia africae ESF-5] gi|238624358|gb|ACR47064.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia peacockii str. Rustic] Length = 328 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 89/320 (27%), Positives = 151/320 (47%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 11 KPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + R E L + E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ Q DA ++ L VF EG+ + FA +L+ R Sbjct: 128 MKDKYDYMQQ------------FGVDAKEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDE+LH N I + ENP +WT+ +++ E A Sbjct: 176 NKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFEDA 235 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ + Sbjct: 236 FIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEHT 295 Query: 334 NFFETRVTEYQQGAEL-KWD 352 NFFE R TEY + A W+ Sbjct: 296 NFFENRTTEYSKAATTGSWE 315 >gi|67459102|ref|YP_246726.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia felis URRWXCal2] gi|67004635|gb|AAY61561.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia felis URRWXCal2] Length = 327 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 87/320 (27%), Positives = 149/320 (46%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA+E + + HW+P EVP+ DD+ WK L E+ ++ + FF ++ Sbjct: 11 KPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLAPGEKHLLTQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + R E L + E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ Q D ++ L VF EG+ + FA +L+ R Sbjct: 128 MKDKYDYMQQ------------FGVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDE+LH N I + ENP +WT+ +++ E A Sbjct: 176 NKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFEDA 235 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ + Sbjct: 236 FIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEHT 295 Query: 334 NFFETRVTEYQQGAEL-KWD 352 NFFE R TEY + A W+ Sbjct: 296 NFFENRATEYSKAATTGSWE 315 >gi|31322342|gb|AAP15464.1| ribonucleotide reductase small subunit [Rickettsia rickettsii str. 'Sheila Smith'] Length = 336 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 90/326 (27%), Positives = 153/326 (46%), Gaps = 21/326 (6%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK------SKNGLTDDERLMIKRNLGF 88 P Y WA+E + + HW+P EVP+ DD+ WK K+ LT E+ ++ + F Sbjct: 11 KPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKYNLTPGEKHLLTPGEKHLLTQIFRF 70 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 F ++ V N + R E L + E VH + +++ ++G+ E E ++ Sbjct: 71 FTQADIEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSA 129 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 + + + K ++ Q DA ++ L VF EG+ + FA + Sbjct: 130 FLKYKEMKDKYDYMQQ------------FGVDAKEDIATTLAVFGAFTEGLQLFASFAIM 177 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 L+ R NKM G+ + + +RDE+LH N I + ENP +WT+ +++ Sbjct: 178 LNFPRFNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTI 237 Query: 269 TLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 E A+ G + L A QY+++IA+RR Q+GL+ ++ NP PW+ E++ Sbjct: 238 VHFEDAFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEML 297 Query: 328 DLKKEKNFFETRVTEYQQGAEL-KWD 352 + + NFFE R TEY + A W+ Sbjct: 298 NGVEHTNFFENRTTEYSKAATTGSWE 323 >gi|88658048|ref|YP_507564.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia chaffeensis str. Arkansas] gi|88599505|gb|ABD44974.1| ribonucleoside-diphosphate reductase, beta subunit [Ehrlichia chaffeensis str. Arkansas] Length = 324 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 86/320 (26%), Positives = 153/320 (47%), Gaps = 14/320 (4%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF ++ Sbjct: 11 KPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + E L + E +H + Y++ ++G+ E E + + + Sbjct: 69 EVNNCYMKHYSNIFKPTEVCMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEV 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ + F K+ + + L VF EG+ + FA +L+ R Sbjct: 128 MKKKYDYMQR---------FEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + +RDE+LH I + N EN +W +Q+ LE Sbjct: 179 GKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDSLKQELYEACRIIVSLEDE 238 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + + G V L++ ++Y+++IANRR Q+ LEP++ +NP W+ E+++ + Sbjct: 239 FINLAFACGDVEGLSSKEVKEYIRYIANRRLLQLNLEPIYDTNKNPLLWLDEILNGVEHT 298 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY + A E W+ Sbjct: 299 NFFENRVTEYARAATEGTWE 318 >gi|315637824|ref|ZP_07893014.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter upsaliensis JV21] gi|315482065|gb|EFU72679.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter upsaliensis JV21] Length = 340 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 88/345 (25%), Positives = 161/345 (46%), Gaps = 14/345 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I ++ D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPNSNESLGDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTRDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 RC--NLTAAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ ++ ++ + ++ M + ++ K ++ + L+ D D L Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDATLREKNDFISGIYEELAG--------DVDDNKLLL 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+ ++ K +M A LEI + +G E+Y+ ++ ++R I Sbjct: 236 RPDLFNEQNIDKIYSMFKRAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLIAIN 295 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 L+ ++ ++P W+ + +K NFFE++VT Y +G+ + +D Sbjct: 296 LDRIYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-ISFD 338 >gi|85710107|ref|ZP_01041172.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1] gi|85688817|gb|EAQ28821.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1] Length = 346 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 85/318 (26%), Positives = 152/318 (47%), Gaps = 17/318 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 N P +Y WA+E + HWMP EVP+ +D W LT+ ER ++ + FF Sbjct: 7 RNTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQ--NLTEHERNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V + R E + L + E VH + +++ ++G+ E E ++ + Sbjct: 65 QADVEVQDCYHDKYGRVFKPTEIKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + K N+ Q + D D++ + L +F EG+ + FA +++ Sbjct: 124 DYEEMADKHNYMHQ------------FSVDTDEDIARTLAMFGGFTEGLQLFASFAMLMN 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 R NKM G+ + + +RDE+LH I + + E L TK ++ + + Sbjct: 172 FPRFNKMKGMGQIVSWSVRDETLHCEGIIKMFHTFCEERDCL-TKAVKEDIIDICQKTVR 230 Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 LE A+ G V + A ++Y+++IA+ R Q+ L+P++ E+P PW+S +++ Sbjct: 231 LEDAFIDLAFEMGPVEGMTAKDIKKYIRYIADWRLGQLNLQPIYMIDEHPLPWLSPLLNG 290 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFE R TEY +GA Sbjct: 291 VEHANFFEARATEYSKGA 308 >gi|103487260|ref|YP_616821.1| ribonucleotide-diphosphate reductase subunit beta [Sphingopyxis alaskensis RB2256] gi|98977337|gb|ABF53488.1| Ribonucleoside-diphosphate reductase [Sphingopyxis alaskensis RB2256] Length = 354 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 82/318 (25%), Positives = 151/318 (47%), Gaps = 17/318 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y WA++ + HW+P EVP+ +D W ++D ER ++ + FF Sbjct: 7 RKTYKPFEYPWAFDFWKRQQQIHWVPEEVPLGEDCRDWAQ--KISDHERNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V + R E + L + E VH + +++ ++G+ E E + M+ Sbjct: 65 QADIEVQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGMFL 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + AK ++ Q + D++ + L +F EG+ + FA +++ Sbjct: 124 EYDEMRAKHDYMQQ------------FGVETDEDIARTLAMFGGFTEGLQLFASFAMLMN 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 R NKM G+ + + +RDESLH I + + E L TK ++ + Sbjct: 172 FPRFNKMKGMGQIVSWSIRDESLHCEGIIKLFHAFTKERGCL-TKAVKEDIIDTCQKTVR 230 Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 LE A+ +G V + ++Y+++IA+ R Q+G +P++ E+P PW++ +++ Sbjct: 231 LEDAFIDLAFEQGPVPGMTPKEIKRYIRYIADWRLGQLGFQPIYMIDEHPLPWLAPLLNG 290 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFETR TEY +GA Sbjct: 291 VEHANFFETRATEYSKGA 308 >gi|209170936|ref|YP_002268082.1| agip52 [Agrotis ipsilon multiple nucleopolyhedrovirus] gi|208436527|gb|ACI28754.1| ribonucleotide reductase-2B [Agrotis ipsilon multiple nucleopolyhedrovirus] Length = 313 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 93/324 (28%), Positives = 147/324 (45%), Gaps = 26/324 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+ + W Y A + W EV M D ++S L DDER IK L FFA Sbjct: 5 RKVLKPILHDDLWAAYKQAFDCMWKVEEVDMSRDYDDFES--KLNDDERYFIKHVLAFFA 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147 +++S+V N++ + R++ E + + Q E VH+ + +I L DE E N Sbjct: 63 AADSIVNINLIEYMQRNVPELEAQYFYNLQVLIECVHTEMYNLLIEQLIKDEHERDTLLN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + VP + KA WA+++ ++D L + V + + EG++F FA Sbjct: 123 AFEHVPCVRKKAQWAMKWI-------------ESDTATLAERMVAFAIVEGVFFSGSFAA 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 I + M G+ + I RDE LH +F E T +M E Sbjct: 170 IFYIKTKGIMPGLTFSNELISRDEGLHTDFACLYYKTRVTEKLDSDT------ILSMFKE 223 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A +E + +P +G+NA S +Y++F+A+R Q+G F NPF +M+ I Sbjct: 224 AVAIEKEFFTAALPVELLGMNAQSMCEYIEFVADRLLVQLGQPKYFNAR-NPFEFMNN-I 281 Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351 L+ + NFFE RV EY++ + Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGED 305 >gi|326386063|ref|ZP_08207687.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium nitrogenifigens DSM 19370] gi|326209288|gb|EGD60081.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium nitrogenifigens DSM 19370] Length = 351 Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 80/318 (25%), Positives = 149/318 (46%), Gaps = 17/318 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y WA+E + HWMP EVP+ +D W ++D ER ++ + FF Sbjct: 7 RKTYKPFEYPWAYEFWKRQQQVHWMPEEVPLGEDCRDWAQ--KISDHERNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V + R E + L + E +H + +++ ++G+ E E + M+ Sbjct: 65 QADVEVQDCYHEKYGRVFKPTEVKMMLAAFSNMETIHIAAYSHLLDTIGMPESE-YGMFL 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + AK ++ D+D++ + L +F EG+ + FA +++ Sbjct: 124 EYEEMKAKHDYM------------QLFGVDSDEDIARTLAMFGGFTEGLQLFASFAMLMN 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 R NKM G+ + + +RDE+LH + E TK ++ + Sbjct: 172 FPRFNKMKGMGQIVSWSVRDETLHCEGITRLFQAFVQER-DCMTKAVREDIIDCCQKTVR 230 Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 LE A+ +G V ++A ++Y+++IA+ R Q+G +P++ E+P PW++ +++ Sbjct: 231 LEDAFIDLAFEQGPVPGMSAKEIKRYIRYIADWRLGQLGFQPIYMIEEHPLPWLTPLLNG 290 Query: 330 KKEKNFFETRVTEYQQGA 347 + NFFETR TEY + A Sbjct: 291 VEHANFFETRATEYSKAA 308 >gi|83859670|ref|ZP_00953190.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis alexandrii HTCC2633] gi|83852029|gb|EAP89883.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis alexandrii HTCC2633] Length = 348 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 82/319 (25%), Positives = 147/319 (46%), Gaps = 18/319 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y WA++ + HW+P EVP+ +D W + LTD ER ++ + FF S+ Sbjct: 19 KPFRYPWAYDFWKVQSQVHWLPEEVPLGEDCKDWAT--KLTDKERNLLTQIFRFFTQSDV 76 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + E R L + E +H + ++ ++G+ + E F+ + E Sbjct: 77 EVGANYMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPDTE-FSAFMEYEE 135 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + AK ++ ++ + D++ L + VF EG+ + FA +++ R Sbjct: 136 MAAKHDYLGKFGC------------ETDRDILTSMAVFGGFTEGLQLFASFAMLMNFPRF 183 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDESLH + + + E L TK + LE Sbjct: 184 NKMKGMGQIVSWSVRDESLHCEGMMKLFHTFAEETGAL-TKGVKDDIADCCKTVVSLEDK 242 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V + + Y+++IA+ R Q+ L ++ E+P PW++E+++ + Sbjct: 243 FIELAFEAGEVEGMTPEDIKNYIRYIADWRMKQLKLPTIYGVEEHPIPWLTEILNGVEHA 302 Query: 334 NFFETRVTEYQQGA-ELKW 351 NFFE R TEY +GA + W Sbjct: 303 NFFEARATEYSKGATQGDW 321 >gi|157803769|ref|YP_001492318.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia canadensis str. McKiel] gi|157785032|gb|ABV73533.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia canadensis str. McKiel] Length = 324 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 86/320 (26%), Positives = 150/320 (46%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 11 KPFSYPWAYDAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + R E L + E +H + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKPTEILMMLSAFSNMETIHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ Q D ++ L VF EG+ + FA +L+ R Sbjct: 128 MKDKYDYMQQ------------FGVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDE+LH N I + ENP +WT+ +++ E A Sbjct: 176 NKMKGMGQVIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYGACTTIVHFEDA 235 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ + Sbjct: 236 FIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEHT 295 Query: 334 NFFETRVTEYQQGAEL-KWD 352 NFFE R TEY + A W+ Sbjct: 296 NFFENRATEYSKAATTGSWE 315 >gi|332185556|ref|ZP_08387304.1| ribonucleotide reductase, small chain family protein [Sphingomonas sp. S17] gi|332014534|gb|EGI56591.1| ribonucleotide reductase, small chain family protein [Sphingomonas sp. S17] Length = 351 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 84/316 (26%), Positives = 147/316 (46%), Gaps = 17/316 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 Q P +Y WA+E + HW+P EVP+ +D W LTD ER ++ + FF + Sbjct: 9 QYKPFEYPWAFEFWKRQQQLHWLPEEVPLGEDCRDWAQ--KLTDHERNLLTQIFRFFTQA 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + R E + L + E VH + +++ ++G+ E E + + E Sbjct: 67 DVEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGAFLEY 125 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ + D D++ + L +F EG+ + FA +++ Sbjct: 126 AEMKDKHDYLQK------------FGVDNDEDIARTLAMFGGFTEGVQLFASFAMLMNFP 173 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NKM G+ + + +RDESLH I + + E L TK + LE Sbjct: 174 RFNKMKGMGQIVTWSVRDESLHCEGIIQLFHAFTKERQCL-TKAVKDDIADQCQTTVRLE 232 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 + G V + A ++Y+++IA+ R Q+GL+P++ E+P PW++ +++ + Sbjct: 233 DNFIDLAFEMGPVNGMTAKDIKKYIRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292 Query: 332 EKNFFETRVTEYQQGA 347 NFFETR TEY + A Sbjct: 293 HANFFETRATEYSKAA 308 >gi|73666936|ref|YP_302952.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia canis str. Jake] gi|72394077|gb|AAZ68354.1| Ribonucleoside-diphosphate reductase [Ehrlichia canis str. Jake] Length = 324 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 86/320 (26%), Positives = 152/320 (47%), Gaps = 14/320 (4%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF ++ Sbjct: 11 KPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + E L + E +H + Y++ ++G+ E E + + + Sbjct: 69 EVNNCYMRHYSNIFKPTEVCMMLAAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEV 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ + F K+ + + L VF EG+ + FA +L+ R Sbjct: 128 MKKKYDYMQK---------FEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + +RDE+LH I + N EN +W + + LE Sbjct: 179 GKMKGMGQIIAWSVRDETLHTESIIRLFNTFVQENYEIWDDSLKHELYEACKIIVSLEDE 238 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + + G V L+A ++Y+++IANRR Q+ LEP++ +NP W+ E+++ + Sbjct: 239 FINLAFACGDVEGLSAKEVKKYIRYIANRRLLQLNLEPIYDANKNPLLWLDEILNGVEHT 298 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY + A E W+ Sbjct: 299 NFFENRVTEYARAATEGTWE 318 >gi|163781846|ref|ZP_02176846.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1] gi|159883066|gb|EDP76570.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1] Length = 350 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 170/348 (48%), Gaps = 17/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67 I E + ++R++N +++ +L +KY WA++ Y + +N W+P E+P+ +D Sbjct: 14 IFNPEGERDAANRRIINGNPTNIIELNNIKYPWAFDLYKTMGFSNFWIPEEIPLMEDKKQ 73 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 ++ L+D ER + L F + +S + + R +S PE L Q F+E++H Sbjct: 74 YERV--LSDYERRAYELVLSFLIALDSFQVDML-KDFARMISAPEVEMALTAQEFQESIH 130 Query: 128 SHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 ++++Q+I+ S+ E++N +RE + + + + +E Sbjct: 131 AYSYQFILESVVDPIKADEIYNYWREDEKLKERNEVVAEVYNEFI--------RKPSEEN 182 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 + + E ++FY+GFA +LGR KM +Q +YI RDE H+ ++I + Sbjct: 183 FIKAVIGNYILESLYFYSGFAFFYTLGRQGKMTNTVQQIKYINRDELTHVTLFRNMILNL 242 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 + E P L++ E ++ A EI + +G+N ++Y++++ N R Sbjct: 243 QKEQPELFSPEIKKWIAEYFRYAIDQEIKWGQYVTQDQILGINNQLIDRYIKYLGNLRIT 302 Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKW 351 QIGLEPL+ TENP W+ + + + +FF+ + Y + ELKW Sbjct: 303 QIGLEPLYPEITENPMKWIDDFRKINNTKTDFFQRKPQTYAKANELKW 350 >gi|262277047|ref|ZP_06054840.1| ribonucleoside-diphosphate reductase, beta subunit [alpha proteobacterium HIMB114] gi|262224150|gb|EEY74609.1| ribonucleoside-diphosphate reductase, beta subunit [alpha proteobacterium HIMB114] Length = 342 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 76/316 (24%), Positives = 145/316 (45%), Gaps = 16/316 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y W ++ +L+ HW+P E+P+ +D+ W+ LT E+ ++ + FF + Sbjct: 29 VYKPFRYPWCYDAWLTQQRIHWLPEEIPLAEDVRDWQK--NLTAHEKNLLTQIFRFFTQA 86 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + E + A E +H + +++ ++G+ E E ++ + + Sbjct: 87 DVEVNNCYLRHYTTVFKPTEVLMMMTAFASMETIHVAAYSHLLDTIGMPESE-YSAFLKY 145 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ + +E + + VF EG+ + FA +L+ Sbjct: 146 KEMKDKYDYM------------QNFNVNNKREIAKTVAVFSAFTEGLQLFASFAILLNFP 193 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NKM G+ + + +RDE+LH N I + N ENP L + +++ E Sbjct: 194 RFNKMKGMGQVVTWSVRDETLHCNSMIKIFNTFCAENPGLLDESLKKEITDACRTIVEHE 253 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ G + L A + Y+++IANRR Q+ L+ ++ ENP W+ +++ + Sbjct: 254 DAFIDLAFEMGPIEGLTAQQIKDYIRWIANRRLVQLKLDEIYDVKENPLEWIDTMLNGVE 313 Query: 332 EKNFFETRVTEYQQGA 347 NFFE R TEY + + Sbjct: 314 HMNFFEGRATEYSKAS 329 >gi|189184364|ref|YP_001938149.1| ribonucleotide-diphosphate reductase subunit beta [Orientia tsutsugamushi str. Ikeda] gi|189181135|dbj|BAG40915.1| ribonucleoside-diphosphate reductase beta chain [Orientia tsutsugamushi str. Ikeda] Length = 359 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 26 KPFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWKY--NLTPGEKHLLTQIFRFFTQADI 83 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + R E + L + E +H + +++ ++G+ E E + + + + Sbjct: 84 EVNNCYMKHYARVFQPTEVQMMLSAFSNMETIHIAAYSHLLDTIGMPETE-YQAFMKYKA 142 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ + D +E L VF EG+ + FA +L+ R Sbjct: 143 MKDKYDYMQR------------FNVDNKEEIATTLAVFGAFTEGVQLFASFAILLNFPRY 190 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDE+LH N I + E P +WT++ + + E A Sbjct: 191 NKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTEQLKSRIYEACCTIIHFEDA 250 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V L A ++Y+++IA+RR Q+GL+ + +NP W+ ++++ + Sbjct: 251 FIDLAFEVGGVEGLEARDVKKYIRYIADRRLLQLGLKENYLIEQNPLTWLDQILNGVEHT 310 Query: 334 NFFETRVTEYQQGAEL-KWD 352 NFFE RVTEY + A WD Sbjct: 311 NFFENRVTEYTRSATTGSWD 330 >gi|56555145|gb|AAV98100.1| RR2 protein [Shrimp white spot syndrome virus] Length = 328 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 85/326 (26%), Positives = 149/326 (45%), Gaps = 28/326 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 V+ + + P+ + WE Y W E+ + D W+ LT Sbjct: 28 VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 84 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + +I Sbjct: 85 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 144 Query: 137 SLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 L DE + FN + P+I K WA+ + Q+ + L +L V + Sbjct: 145 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNND--------------LAELIVAF 190 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 EG++F FA I + + G+ ++I RDE LH +F ++ + ++ P Sbjct: 191 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 247 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +++ ++ EA +E + ++P VG+N QY++F+A++ ++GLE + Sbjct: 248 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 304 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETR 339 T NPFP+M I L+ + NFFE R Sbjct: 305 NVT-NPFPFMDN-ISLENKTNFFEKR 328 >gi|90592764|ref|YP_529717.1| RR2B [Agrotis segetum nucleopolyhedrovirus] gi|71559214|gb|AAZ38213.1| RR2B [Agrotis segetum nucleopolyhedrovirus] Length = 313 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 85/324 (26%), Positives = 144/324 (44%), Gaps = 26/324 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+++ W Y A + W EV + D + + L DDER IK L FFA Sbjct: 5 RKVLFPIQHNDLWRAYKQALDCMWKVEEVDLSKDCDDF--TSKLNDDERYFIKHVLAFFA 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147 +++S+V N++ + +++ E + + +Q E VH+ + +I L DE E N Sbjct: 63 AADSIVNINLIEYMQQNVPELEAQYFYNQQVLIECVHTEMYNLLIHQLISDEHERDTLLN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +P + K +WA+++ + + V + + EG++F FA Sbjct: 123 AFERMPCVRKKTDWAMKWINS-------------STATFAERMVAFAIVEGVFFSGSFAA 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 I + M G+ + I RDE LH +F N + K +M E Sbjct: 170 IFYIKTKGIMPGLTFSNELISRDEGLHTDFACLYYNT------RVHDKLAPDTVLSMFKE 223 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A +E + +P +G+NA S Y++F+A+R Q+ F + NPF +M+ I Sbjct: 224 AVAIEKEFFTAALPAALLGMNAQSMCDYIEFVADRLLVQLHQPKHF-HARNPFEFMNN-I 281 Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351 L+ + NFFE RV EY++ Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGDD 305 >gi|50843560|ref|YP_056787.1| ribonucleotide-diphosphate reductase subunit beta [Propionibacterium acnes KPA171202] gi|282854887|ref|ZP_06264221.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J139] gi|289427904|ref|ZP_06429608.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J165] gi|295131638|ref|YP_003582301.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK137] gi|50841162|gb|AAT83829.1| ribonucleoside-diphosphate reductase beta chain [Propionibacterium acnes KPA171202] gi|282582033|gb|EFB87416.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J139] gi|289158787|gb|EFD06987.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes J165] gi|291376691|gb|ADE00546.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK137] gi|313771782|gb|EFS37748.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL074PA1] gi|313808408|gb|EFS46875.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL087PA2] gi|313810605|gb|EFS48319.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL083PA1] gi|313813765|gb|EFS51479.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL025PA1] gi|313818171|gb|EFS55885.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL046PA2] gi|313821029|gb|EFS58743.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL036PA1] gi|313823899|gb|EFS61613.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL036PA2] gi|313827161|gb|EFS64875.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL063PA1] gi|313831646|gb|EFS69360.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL007PA1] gi|313834800|gb|EFS72514.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL056PA1] gi|314924366|gb|EFS88197.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL001PA1] gi|314927054|gb|EFS90885.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL036PA3] gi|314961874|gb|EFT05975.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL002PA2] gi|314965892|gb|EFT09991.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL082PA2] gi|314974996|gb|EFT19091.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL053PA1] gi|314977908|gb|EFT22002.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL045PA1] gi|314979603|gb|EFT23697.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL072PA2] gi|314981613|gb|EFT25706.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA3] gi|314984684|gb|EFT28776.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA1] gi|314988338|gb|EFT32429.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA2] gi|314990428|gb|EFT34519.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA3] gi|315082361|gb|EFT54337.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL078PA1] gi|315083809|gb|EFT55785.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL027PA2] gi|315087306|gb|EFT59282.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL002PA3] gi|315089724|gb|EFT61700.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL072PA1] gi|315092253|gb|EFT64229.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA4] gi|315094826|gb|EFT66802.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL060PA1] gi|315095599|gb|EFT67575.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL038PA1] gi|315104692|gb|EFT76668.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL050PA2] gi|315107754|gb|EFT79730.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL030PA1] gi|327326613|gb|EGE68401.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL096PA3] gi|327332877|gb|EGE74609.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL096PA2] gi|327335278|gb|EGE76988.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL097PA1] gi|327447704|gb|EGE94358.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL043PA2] gi|327448579|gb|EGE95233.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL043PA1] gi|327449568|gb|EGE96222.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL013PA2] gi|328757395|gb|EGF71011.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL020PA1] gi|328762002|gb|EGF75508.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL099PA1] gi|332676502|gb|AEE73318.1| ribonucleoside-diphosphate reductase subunit beta [Propionibacterium acnes 266] Length = 328 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 96/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + + + + ++ + T + Q+F+++L + ++ EG+WFY+GF LS + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P+G +G+NA Y++++A+RR ++G EP ++ NP WM+ D + Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVV-NPAKWMATANDTLQVV 308 Query: 334 NFFETRVTEYQQGA 347 NFFE T Y+ A Sbjct: 309 NFFEATNTSYEVNA 322 >gi|118443949|ref|YP_878438.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium novyi NT] gi|118134405|gb|ABK61449.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium novyi NT] Length = 342 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 88/336 (26%), Positives = 170/336 (50%), Gaps = 17/336 (5%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA E Y + NN W+P E+ + +D+ + LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYNWANELYRTMLNNFWIPEEISLNEDVKQF---PYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ PE L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENL-PNISRYITAPEVSSLLNVQTFQEEIHAQSYSYILDTVTN 131 Query: 141 D--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 ++++ +RE ++ + + Q+ + ++ E + + EG Sbjct: 132 PITRDKIYDQWREDKNLLERNKFIAGIYQSFN--------ENPTTENFLRTIMANYILEG 183 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++FY+GF+ +L R KM + ++YI RDE HL ++I ++K ENP ++T+ Sbjct: 184 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLILFQNIIKELKNENPDIFTESIM 243 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317 ++ R M+ EI + +G+N E+Y+++++N R + IGLE L+ TE Sbjct: 244 EEFRMMMKMGVEHEIKWGQYVTNNEILGINDNLIEKYIKYLSNLRLNAIGLEVLYPEITE 303 Query: 318 NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +P W+ L + +FFE +VT Y + A +D Sbjct: 304 HPMEWIENFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339 >gi|148284015|ref|YP_001248105.1| ribonucleotide-diphosphate reductase subunit beta [Orientia tsutsugamushi str. Boryong] gi|146739454|emb|CAM79093.1| ribonucleoside-diphosphate reductase beta chain [Orientia tsutsugamushi str. Boryong] Length = 329 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 85/320 (26%), Positives = 151/320 (47%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 11 KPFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWKY--NLTPGEKHLLTQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + R E + L + E +H + +++ ++G+ E E + + + + Sbjct: 69 EVNNCYMKHYARVFQPTEVQMMLSAFSNMETIHIAAYSHLLDTIGMPETE-YQAFMKYKA 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ + D +E L VF EG+ + FA +L+ R Sbjct: 128 MKDKYDYMQR------------FNVDNKEEIATTLAVFGAFTEGVQLFASFAILLNFPRY 175 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDE+LH N I + E P +WT++ + + E A Sbjct: 176 NKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTEQLKSRIYEACCTIIHFEDA 235 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G V L A ++Y+++IA+RR Q+GL+ + +NP W+ ++++ + Sbjct: 236 FIDLAFEVGGVEGLEARDVKKYIRYIADRRLLQLGLKENYLIEQNPLTWLDQILNGVEHT 295 Query: 334 NFFETRVTEYQQGAEL-KWD 352 NFFE RVTEY + A WD Sbjct: 296 NFFENRVTEYTRSATTGSWD 315 >gi|57239055|ref|YP_180191.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia ruminantium str. Welgevonden] gi|15811135|gb|AAL08816.1|AF308664_1 hypothetical ribonucleoside reductase beta chain [Ehrlichia ruminantium] gi|57161134|emb|CAH58047.1| putative ribonucleoside-diphosphate reductase beta chain [Ehrlichia ruminantium str. Welgevonden] Length = 324 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 87/320 (27%), Positives = 154/320 (48%), Gaps = 14/320 (4%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++ Sbjct: 11 KPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + E L + E +H + Y++ ++G+ E E + + + Sbjct: 69 EVNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEV 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ + F K+ + + L VF EG+ + FA +L+ R Sbjct: 128 MKKKYDYMQR---------FEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 178 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + +RDE+LH I + N EN +W + +++ LE Sbjct: 179 GKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDDLKKELYEACSVIVTLEDE 238 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + + G V L+A ++Y+++IANRR Q+ LEP++ +NP W+ E+++ + Sbjct: 239 FINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVEHT 298 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY + A E W+ Sbjct: 299 NFFENRVTEYTRAATEGTWE 318 >gi|257458932|ref|ZP_05624052.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter gracilis RM3268] gi|257443636|gb|EEV18759.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter gracilis RM3268] Length = 340 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 156/347 (44%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + D+++ + KY WA + + N W P EV DD+ Sbjct: 4 KKIYNPFSDETLTDRKVFGGNPQGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDDVR 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + LT E+ M S +S NN+ I +++ PE L RQA+EEA Sbjct: 64 DYN--FNLTSAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEAN 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ ++ + ++ M + + K ++ + L+ + + L Sbjct: 122 HSKSYAVMVEAICENTDLIYEMEKHDDMLRRKNDYISSVYEELAG--------EVSDDKL 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ Sbjct: 174 LLAMVANQILEGIYFYSGFTSIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVR 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E L+ K K M A LEI + +G E+Y+ ++ ++R Sbjct: 234 KERADLFNKRNVDKIYEMFETAGNLEIDWGKYITDNQIMGFTDDIIEEYIHYLVDQRLLA 293 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 IGLE + ++P W+ + +K NFFE++VT Y +G+ L +D Sbjct: 294 IGLEKRYD-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-LSFD 338 >gi|168186576|ref|ZP_02621211.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum C str. Eklund] gi|169295422|gb|EDS77555.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium botulinum C str. Eklund] Length = 342 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 86/331 (25%), Positives = 167/331 (50%), Gaps = 16/331 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 + +++ + +KY WA E Y + NN W+P E+ + +D+ + + LTD ER + Sbjct: 21 GSTTNLREWNRIKYNWANELYRNMLNNFWIPEEISLNEDVKQF---SYLTDGERNAFDKI 77 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EG 143 + F +S+ + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++ Sbjct: 78 ISFLNFLDSIQSENL-PNISRYITAPEVSSILNIQAFQEEIHAQSYSYILDTVTNPITRD 136 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 ++++ +RE ++ + + Q + ++ E + + EG++FY+ Sbjct: 137 KIYDQWREDKNLLERNKFIAGIYQRFN--------ENPTTENFLRTIMANYILEGIYFYS 188 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF+ +L R KM + ++YI RDE HL ++I ++K EN ++T+ ++ R Sbjct: 189 GFSFFYTLARQGKMTATSTIFKYINRDEITHLILFQNIIKELKNENLDIFTESIIEEFRM 248 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322 M+ EI + +G+N E+Y+++++N R + IGLE L+ TE+P W Sbjct: 249 MMKTGVEHEIKWGQYVTNNEILGINNNLIEKYIKYLSNLRLNAIGLEVLYPEITEHPMEW 308 Query: 323 MSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 + L + +FFE +VT Y + A +D Sbjct: 309 IENFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339 >gi|58578998|ref|YP_197210.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia ruminantium str. Welgevonden] gi|58417624|emb|CAI26828.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia ruminantium str. Welgevonden] Length = 329 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 87/320 (27%), Positives = 154/320 (48%), Gaps = 14/320 (4%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++ Sbjct: 16 KPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQADI 73 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + E L + E +H + Y++ ++G+ E E + + + Sbjct: 74 EVNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEV 132 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ + F K+ + + L VF EG+ + FA +L+ R Sbjct: 133 MKKKYDYMQR---------FEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 183 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + +RDE+LH I + N EN +W + +++ LE Sbjct: 184 GKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDDLKKELYEACSVIVTLEDE 243 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + + G V L+A ++Y+++IANRR Q+ LEP++ +NP W+ E+++ + Sbjct: 244 FINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVEHT 303 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY + A E W+ Sbjct: 304 NFFENRVTEYTRAATEGTWE 323 >gi|269105083|ref|ZP_06157778.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae CIP 102761] gi|268160718|gb|EEZ39216.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae CIP 102761] Length = 310 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 88/328 (26%), Positives = 151/328 (46%), Gaps = 30/328 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + L P++Y W+ Y + W E+ DLA LT+ E+ I+ L FF Sbjct: 5 NKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLAD---LAKLTEGEKHFIRHVLAFF 61 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL---DEGELF 146 A SE ++ N++ Y + E R +L QAF E +H+ T+ + + + LF Sbjct: 62 AQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPAVEERERLF 121 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 N VP++ KA W +++ + + L + + + EG++F F Sbjct: 122 NAIENVPTVKRKAEWVMKWI--------------SSDKPLTMRLIAFGLVEGLFFAGSFC 167 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 I + + + G+A I RDE LH +F + + K QQ+ + Sbjct: 168 AIYYFRKRSLLAGLAASNDLIARDEGLHFSFSALLFKTLGQG------KVTQQEFEEICR 221 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 EA +E + E +P +G+NA QY++ A+ G +P+F Y +NPF +M + Sbjct: 222 EAVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIAGLFGFDPIF-YAKNPFDYMR-L 279 Query: 327 IDLKKEKNFFETRVTEYQQGAE--LKWD 352 +D++ + NFFE RVTEY++ + L +D Sbjct: 280 LDMEGKTNFFEKRVTEYKRPQDRQLSFD 307 >gi|327328671|gb|EGE70431.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL103PA1] Length = 328 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 96/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + + + + ++ + T + Q+F+++L + ++ EG+WFY+GF LS + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P+G +G+NA Y++++A+RR ++G EP ++ NP WM+ D + Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRIV-NPAKWMATANDTLQVV 308 Query: 334 NFFETRVTEYQQGA 347 NFFE T Y+ A Sbjct: 309 NFFEATNTSYEVNA 322 >gi|289425969|ref|ZP_06427716.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK187] gi|289153512|gb|EFD02226.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes SK187] gi|313763766|gb|EFS35130.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL013PA1] gi|313802998|gb|EFS44206.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA2] gi|313816916|gb|EFS54630.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL059PA1] gi|313829718|gb|EFS67432.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL063PA2] gi|313839374|gb|EFS77088.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL086PA1] gi|314916474|gb|EFS80305.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL005PA4] gi|314932316|gb|EFS96147.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL067PA1] gi|314956590|gb|EFT00842.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL027PA1] gi|314959472|gb|EFT03574.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL002PA1] gi|314964864|gb|EFT08964.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL082PA1] gi|314968630|gb|EFT12728.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL037PA1] gi|315079174|gb|EFT51177.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL053PA2] gi|315100241|gb|EFT72217.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL059PA2] gi|315102565|gb|EFT74541.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL046PA1] gi|315109517|gb|EFT81493.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL030PA2] gi|327455890|gb|EGF02545.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL087PA3] gi|327458042|gb|EGF04697.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL083PA2] gi|328757204|gb|EGF70820.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL087PA1] gi|328757585|gb|EGF71201.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL025PA2] Length = 328 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 96/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + + + + ++ + T + Q+F+++L + ++ EG+WFY+GF LS + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P+G +G+NA Y++++A+RR ++G EP ++ NP WM+ D + Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVA-NPAKWMATANDTLQVV 308 Query: 334 NFFETRVTEYQQGA 347 NFFE T Y+ A Sbjct: 309 NFFEATNTSYEVNA 322 >gi|15604372|ref|NP_220888.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia prowazekii str. Madrid E] gi|51473694|ref|YP_067451.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia typhi str. Wilmington] gi|3861064|emb|CAA14964.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (nrdB) [Rickettsia prowazekii] gi|51460006|gb|AAU03969.1| Ribonucleotide reductase [Rickettsia typhi str. Wilmington] gi|292572126|gb|ADE30041.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia prowazekii Rp22] Length = 324 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 87/320 (27%), Positives = 149/320 (46%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA+E + + HW+P EVP+ D+ WK LT E+ ++ + FF ++ Sbjct: 11 KPFSYPWAYEAWHTQQKIHWLPEEVPLAYDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + R E L + E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKPTEVLMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ Q D ++ L VF EG+ + FA +L+ R Sbjct: 128 MKDKYDYMQQ------------FGVDNKEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDE+LH N I + ENP +WT+ +++ E A Sbjct: 176 NKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFEDA 235 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ + Sbjct: 236 FIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEHT 295 Query: 334 NFFETRVTEYQQGAEL-KWD 352 NFFE R TEY + A W+ Sbjct: 296 NFFENRATEYSKAATTGSWE 315 >gi|51891459|ref|YP_074150.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium thermophilum IAM 14863] gi|51855148|dbj|BAD39306.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium thermophilum IAM 14863] Length = 346 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 165/347 (47%), Gaps = 16/347 (4%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + + +R++ +++ +L +KY WA + N W+P EVP+ DD + Sbjct: 10 LFNEHGERDWGKRRIIGGNPTNIMELTNVKYEWAQKLSDIMLRNFWIPEEVPLLDDAKQY 69 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 LT DE+ R L F +S++ + + + +++ PE L F EA+HS Sbjct: 70 ---LELTADEQWAYDRMLSFVIFMDSILTVS-MPNLINYVTAPEINMCLSIHNFHEALHS 125 Query: 129 HTFQYIITSLGLDEGELF--NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 ++ Y++ S+ E + +++RE + + + +F + E Sbjct: 126 KSYGYVLESVVPAERRQYIYDLWREDRQLLERNRYIAN--------TFQLFADNPTDEHF 177 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V EG++FY+GFA +L R KM G A + Q+I RDE H+ +++N ++ Sbjct: 178 VRACMAQYVLEGIYFYSGFAFFYALARMGKMKGTATEIQFINRDEITHVAVFQNILNGLR 237 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+T + R M+ +A E+A+A + GL+ + Y++ +A++R Sbjct: 238 QERPQLFTPQLDADLRAMIRQAAEHEMAWAAYCVGNRIQGLSGEVLQGYVKHLADQRARA 297 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 +G EPL+ NP W+ +L + + +FFETRVT Y + + D Sbjct: 298 LGFEPLYGNHPNPIKWVESFSNLNQTKADFFETRVTNYAKSTNIDLD 344 >gi|314918862|gb|EFS82693.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL050PA1] gi|314921071|gb|EFS84902.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL050PA3] Length = 328 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 95/314 (30%), Positives = 171/314 (54%), Gaps = 4/314 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + + + + ++ + T + ++F+++L + ++ EG+WFY+GF LS + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTRDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P+G +G+NA Y++++A+RR ++G EP ++ NP WM+ D + Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVA-NPAKWMATANDTLQVV 308 Query: 334 NFFETRVTEYQQGA 347 NFFE T Y+ A Sbjct: 309 NFFEATNTSYEVNA 322 >gi|91205547|ref|YP_537902.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia bellii RML369-C] gi|91069091|gb|ABE04813.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia bellii RML369-C] Length = 324 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 86/320 (26%), Positives = 148/320 (46%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 11 KPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + R E L + E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKPTEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ Q +++ L VF EG+ + FA +L+ R Sbjct: 128 MKDKYDYMQQ------------FGVATNEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDE+LH N I + ENP +WT+ + + E A Sbjct: 176 NKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTENLRSRIYKACTTIVHFEDA 235 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A Y+++IA+RR Q+GL+ ++ NP PW+ E+++ + Sbjct: 236 FIALAFEVGGIEGLTADEVRLYIRYIADRRLFQLGLKDIYMVKNNPLPWLDEMLNGVEHT 295 Query: 334 NFFETRVTEYQQGAEL-KWD 352 NFFE R TEY + A W+ Sbjct: 296 NFFENRATEYSKAATTGSWE 315 >gi|58617056|ref|YP_196255.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia ruminantium str. Gardel] gi|58416668|emb|CAI27781.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia ruminantium str. Gardel] Length = 329 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 87/320 (27%), Positives = 154/320 (48%), Gaps = 14/320 (4%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++ Sbjct: 16 KPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQADI 73 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + E L + E +H + Y++ ++G+ E E + + + Sbjct: 74 EVNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEV 132 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ + F K+ + + L VF EG+ + FA +L+ R Sbjct: 133 MKKKYDYMQR---------FEECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRF 183 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + + +RDE+LH I + N EN +W + +++ LE Sbjct: 184 GKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDGDLKKELYEACSVIVTLEDE 243 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + + G V L+A ++Y+++IANRR Q+ LEP++ +NP W+ E+++ + Sbjct: 244 FINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVEHT 303 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY + A E W+ Sbjct: 304 NFFENRVTEYTRAATEGTWE 323 >gi|197103810|ref|YP_002129187.1| ribonucleoside-diphosphate reductase, beta subunit [Phenylobacterium zucineum HLK1] gi|196477230|gb|ACG76758.1| ribonucleoside-diphosphate reductase, beta subunit [Phenylobacterium zucineum HLK1] Length = 350 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 79/317 (24%), Positives = 138/317 (43%), Gaps = 17/317 (5%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 P +Y WA++ + HWMP E+P+ +DL W S L D ER ++ + FF Sbjct: 20 FAYKPFRYPWAYDYWKKQQQVHWMPEEIPLGEDLKDWAS--KLNDRERNLLTQIFRFFTQ 77 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 S+ V +N + R E + L + E +H + ++ ++G+ + E F + + Sbjct: 78 SDVEVNDNYMERYARVFKPTEVKMMLAAFSNMETIHIAAYALLLETIGMPDAE-FTAFLD 136 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 ++ K ++ + D + + L +F EG+ + FA +++ Sbjct: 137 YQAMRDKHDYM------------QSFGVDTHADICRTLAMFGGFTEGLQLFASFAMLMNF 184 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 R NKM G+ + + +RDESLH I + + E T+ L Sbjct: 185 PRHNKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKETG-AVTQAVADDIVDCCKTVVGL 243 Query: 272 EIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 E + G V + +QY++FIA+ R Q+ L ++ ENP PW+ ++ Sbjct: 244 EDKFIDLAFEAGEVQGMTPDDIKQYIRFIADWRLKQLHLPQVYGIKENPLPWLQSMLSGV 303 Query: 331 KEKNFFETRVTEYQQGA 347 + NFFE R TEY + A Sbjct: 304 EHANFFEARATEYSKAA 320 >gi|157827263|ref|YP_001496327.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia bellii OSU 85-389] gi|157802567|gb|ABV79290.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia bellii OSU 85-389] Length = 324 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 86/320 (26%), Positives = 148/320 (46%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++ Sbjct: 11 KPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKY--NLTPGEKHLLTQIFRFFTQADI 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N + R E L + E VH + +++ ++G+ E E ++ + + Sbjct: 69 EVNNCYMKHYSRVFKPTEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYKE 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ Q +++ L VF EG+ + FA +L+ R Sbjct: 128 MKDKYDYMQQ------------FGVATNEDIATTLAVFGAFTEGLQLFASFAIMLNFPRF 175 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDE+LH N I + ENP +WT+ + + E A Sbjct: 176 NKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTENLRSRIYKACTTIVHFEDA 235 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A Y+++IA+RR Q+GL+ ++ NP PW+ E+++ + Sbjct: 236 FIALAFEVGGIEGLTADEVRLYIRYIADRRLFQLGLKDIYMVKNNPLPWLDEMLNGVEHT 295 Query: 334 NFFETRVTEYQQGAEL-KWD 352 NFFE R TEY + A W+ Sbjct: 296 NFFENRATEYSKAATTGSWE 315 >gi|115378653|ref|ZP_01465803.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella aurantiaca DW4/3-1] gi|115364319|gb|EAU63404.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella aurantiaca DW4/3-1] Length = 288 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 89/276 (32%), Positives = 149/276 (53%), Gaps = 6/276 (2%) Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 +TD ER +I R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H + Sbjct: 1 MTDAERHLIHRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLT 60 Query: 134 IITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 ++ + D + F +PSI KA + L++ ++ + T++ + FL +L Sbjct: 61 LLDTYVPDPADRAKAFAAIDNIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLLNLI 119 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 F EG++F+ FA + L + G+A ++ RDES H+ F + I + E P Sbjct: 120 CFAGCIEGLFFFAAFAYVYFLRSKGLLHGLAAGTNWVFRDESTHMAFAFEAIRVARQEEP 179 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 L+ Q M+ EA E +A + + G GL+ QY++++A++R +GL Sbjct: 180 DLFDARMQADVVAMMREAVECETLFAQDLLSGGVAGLSVQEMRQYLEYVADQRLTMLGLA 239 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 P+F +N P+M + D+++ NFFE RV+ YQ Sbjct: 240 PVF-RVKNSLPFMD-LQDVQELTNFFERRVSAYQVA 273 >gi|237738278|ref|ZP_04568759.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium mortiferum ATCC 9817] gi|229420158|gb|EEO35205.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium mortiferum ATCC 9817] Length = 348 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 87/352 (24%), Positives = 163/352 (46%), Gaps = 20/352 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + ++++++++ +++ L +KYGWA Y + N W+P ++ + D Sbjct: 8 KKLFNPSGIDSLNERKIIKGNSTNIFNLNNVKYGWANHLYRTMMGNFWIPEKIDLTQDRV 67 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + N LT+ E+ L F +S+ NNI I +++ PE L Q F+EA+ Sbjct: 68 DY---NNLTNYEKEAYDGILSFLIFLDSIQTNNI-PNISDYITAPEINLILSIQTFQEAI 123 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++QYII S+ E R + + L + + + D + Sbjct: 124 HSQSYQYIIESILPKET------RNYIYDKWREDKILFERNRYIAEIYQNFLDNPDDKNF 177 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V + E ++FY GF L N+M+G ++ + I RDE H+ +I +++ Sbjct: 178 ARVIVADYLLESIYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVIFQQMIKEVQ 237 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 ENP+ + + M +A EI++ + + +G+ + E Y +++AN R Sbjct: 238 NENPNFFD---ENIIYEMFEKAVEQEISWTNHIIGGNILGITEKTTESYTKWLANERLKS 294 Query: 307 IGLEPLFK-YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 IGL+PL++ Y +NP+ + D + + NFFE VT Y + ++ WD Sbjct: 295 IGLQPLYEGYEKNPYKHLERFADTEGEGNVKANFFEGTVTSYNMSSSVEGWD 346 >gi|288817346|ref|YP_003431693.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus TK-6] gi|288786745|dbj|BAI68492.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus TK-6] gi|308750953|gb|ADO44436.1| ribonucleotide reductase [Hydrogenobacter thermophilus TK-6] Length = 342 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 170/348 (48%), Gaps = 17/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67 I + ++++ +++ +L +KY WA++ Y + N W+P E+PM +D Sbjct: 6 IFNPQGDRETSKRKVIFGNPTNIMELNNVKYQWAFDLYKTMGFTNFWVPEEIPMHEDKKQ 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 ++ L+ E+ + L F + +S N++ R+++ PE L Q F+EA+H Sbjct: 66 YEK--DLSPYEKRAYEMVLSFLIALDSYQV-NMLKEFARYITAPELVMALTSQEFQEALH 122 Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 S+++Q+I+ S+ + E++N +R+ + + Q + +E Sbjct: 123 SYSYQFILESVVEPQVADEIYNYWRQDTVLMERNQVIAQLYNEFI--------RHPTEEN 174 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 V E ++FY+GFA +LGR KM +Q +YI RDE H+ ++I I Sbjct: 175 FIKATFGNYVLESLYFYSGFAFFYTLGRQGKMRNTVQQIKYINRDELTHVTLFRNIIQTI 234 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K ENP L+T E ++ AT EI + +G+N ++Y++++AN R Sbjct: 235 KQENPELFTPELEKWVYEFFKYATDAEIKWGQYVTQNQILGINNTLIDRYIKYLANLRLT 294 Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKW 351 Q+G +PL+ TENP W+ + + + +FF+ + Y + +ELKW Sbjct: 295 QLGYKPLYPEITENPMKWIDQFRTINDTKTDFFQAKPQTYAKRSELKW 342 >gi|313793687|gb|EFS41718.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL110PA1] gi|327456018|gb|EGF02673.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL092PA1] Length = 328 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 96/314 (30%), Positives = 170/314 (54%), Gaps = 4/314 (1%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + + + + ++ + T + Q+F+++L + ++ EG+WFY+GF LS + Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P+G G+NA Y++++A+RR ++G EP ++ NP WM+ D + Sbjct: 250 QYNRDMLPRGIRGMNADYVNDYVKYLADRRLEELGFEPEYRVA-NPAKWMATANDTLQVV 308 Query: 334 NFFETRVTEYQQGA 347 NFFE T Y+ A Sbjct: 309 NFFEATNTSYEVNA 322 >gi|310831442|ref|YP_003970085.1| putative ribonucleoside-diphosphate reductase small subunit [Cafeteria roenbergensis virus BV-PW1] gi|309386626|gb|ADO67486.1| putative ribonucleoside-diphosphate reductase small subunit [Cafeteria roenbergensis virus BV-PW1] Length = 326 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 89/329 (27%), Positives = 150/329 (45%), Gaps = 29/329 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + + + P+KY W+ Y W E+ D +K L DE+ Sbjct: 7 NEELLKSENSRYTVFPIKYHKIWDLYKKMEAAFWTAEEIDWSKDKHDFK---KLNQDEQR 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 IK L FF++S+++V N+ + + E + Q E +HS + I ++ Sbjct: 64 FIKYVLAFFSASDTIVNINLGERLSHEVQPLEAKIAYTFQMMMEGIHSEVYALQIDNIIE 123 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E N VP I AK +W L++ +E V V+ E Sbjct: 124 DVQERKDILNSIETVPCIKAKTDWMLKWV--------------KSEESFATRMVAQVISE 169 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F F I L N M G+ + I RDE +H ++ I + + ++ K Sbjct: 170 GLFFSGSFCAIFWLKNKNIMPGLISSNELIARDEGMHCDYSIMLYHMLQ-------NKLS 222 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 Q+K + M +A E + E++P +G+NA EQY++F+A++ ++G +FK Sbjct: 223 QEKIQQMFKDAVETERIFICESLPCSLLGMNADLMEQYIKFVADQLIIKLGYNKIFKVD- 281 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 NPF WM E I ++ + NFFE R T+YQ+ Sbjct: 282 NPFTWM-EAISIEGKTNFFEHRPTQYQRA 309 >gi|261419130|ref|YP_003252812.1| ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61] gi|319765947|ref|YP_004131448.1| ribonucleotide reductase [Geobacillus sp. Y412MC52] gi|261375587|gb|ACX78330.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61] gi|317110813|gb|ADU93305.1| ribonucleotide reductase [Geobacillus sp. Y412MC52] Length = 346 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 87/327 (26%), Positives = 158/327 (48%), Gaps = 17/327 (5%) Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ++N R S+V + Y WA+ KY N W P E+ M D+ + LTD E+ Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF---PQLTDREQDAF 78 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + +G A +S+ + + ++++P ++ A +E +H+H++ Y+++SL Sbjct: 79 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E+F+ +R P++ + ++ + ++ + E L VF V+ EG++ Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEEPNVEHLLRSIVFDVILEGLF 189 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 R +A LEI +A E + G++ E Y++F AN R HQ+G + F Y NP Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309 Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQ 345 W+ ++ + +FFE + +Y + Sbjct: 310 LRWIKAYEEVDLGKSDFFEQKPRQYTK 336 >gi|154149104|ref|YP_001405803.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter hominis ATCC BAA-381] gi|153805113|gb|ABS52120.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter hominis ATCC BAA-381] Length = 340 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 89/347 (25%), Positives = 160/347 (46%), Gaps = 14/347 (4%) Query: 8 SPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 I + ++++ + + KY WA + + N W P EV DD+ Sbjct: 4 KKIYNPFSNETLTERKIFSGNPQGILNFTKAKYVWALKLWDIMEANTWFPREVDTTDDVR 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + LT E+ M + S +S NN+ I +++ PE L RQA+EEA Sbjct: 64 DYN--FNLTPAEKRMYELVWSQLISMDSFQTNNLADNINPYITAPEINAILARQAYEEAN 121 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++ ++ ++ + +++ M + + K ++ + L+ + D+ L Sbjct: 122 HSKSYAVMVEAICQNTDQIYEMEKFDDVLREKNDYISSIYEELAG--------EVDENKL 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++FY+GF I +L R+ KM+G A+ ++I RDE HL ++IN ++ Sbjct: 174 LLAMVANQILEGIYFYSGFCSIYALARSGKMLGSAQMIRFIQRDEITHLLLFQNMINSVR 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E P L+ + K M +A LEI + +GL E+Y+ ++ + R Sbjct: 234 KERPDLFNDKNIAKIYEMFEKAGELEIKWGKYITQNQIMGLTDEIIEEYIHYLVDNRLSA 293 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQGAELKWD 352 IGL + +P W+ + +K NFFE++VT Y +G+ L +D Sbjct: 294 IGLNKKYNAR-HPIKWVDDFAKFNDQKSNFFESKVTNYSKGS-LNFD 338 >gi|187778605|ref|ZP_02995078.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC 15579] gi|187772230|gb|EDU36032.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC 15579] Length = 342 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 84/334 (25%), Positives = 166/334 (49%), Gaps = 13/334 (3%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDVKQF---PYLTDGERN 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++ Sbjct: 73 AFDKIISFLNFLDSVQSENL-PNISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + R+ + + L + + K+ + + + + EG++ Sbjct: 132 P------ITRDKIYDQWREDEQLLERNKFIAGIYEKFNKEPEIYNFLRVIMANYILEGIY 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GF+ +L R KM + ++YI RDE HL ++I ++K ENP+++T+E +++ Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKSENPNIFTEELEEE 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 R M+ EI + +GLN ++Y+++++N R IGL+PL+ ++P Sbjct: 246 FREMMRMGVEHEIKWGQYVTNNEILGLNDELIDKYIKYLSNLRLTAIGLKPLYPEINKHP 305 Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 W+ L + +FFE +VT Y + A +D Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAVFDFD 339 >gi|269865627|ref|XP_002651990.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063361|gb|EED42066.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 290 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 84/302 (27%), Positives = 134/302 (44%), Gaps = 31/302 (10%) Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 + W EV M D + + LT +E+ IK L FFA+S+ +V N+V Sbjct: 1 MHESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASDGIVNENLVERFSSE 57 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQ 164 + E + + Q E +HS + +I +L D+ E FN +PSI KA WA + Sbjct: 58 VQILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQK 117 Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 + A V + EG++F FA I L + M G+ Sbjct: 118 WI--------------ASDTSFDTRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSN 163 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 + I RDE LH +F + I + ++ EA +E + E++P Sbjct: 164 ELISRDEGLHTDFACLLHKYINNKCT---------VIEDIVREAVAIEQEFLSESLPVSL 214 Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 +G+N QY++F+A+R +G + ++ + NPF +M E I L+ + NFFE R T YQ Sbjct: 215 IGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERRETNYQ 272 Query: 345 QG 346 +G Sbjct: 273 KG 274 >gi|228861726|ref|YP_002854746.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus] gi|226425174|gb|ACO53586.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus] Length = 339 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 92/333 (27%), Positives = 154/333 (46%), Gaps = 20/333 (6%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +LP+++ W+ Y +A + W EV + D W+ N L +DER +K L FFA Sbjct: 7 RKVILPIQHANLWKAYKTALDCVWKVEEVDLTKDWEDWQ--NKLNEDERHFLKHILAFFA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147 S++S+V N++ + ++ E R + +Q F E VHS + +I DE E N Sbjct: 65 SADSIVNINLIDYVRGKVAELEARYFYDQQIFIENVHSEMYSLLIFEYIKDEQEKDTLLN 124 Query: 148 MYREVPSITAKANWALQYT------QTLSSPSFTTGTK---DADQEFLQDLFVFYVVFEG 198 + ++ + KA WAL++T L +P+ + L V + + EG Sbjct: 125 AFNDIECVRKKAQWALKWTESAWWQDWLVNPATRWCNRLMGKQTPSELAVRMVAFAIVEG 184 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I + M G+ + I RDE LH NF N+ E+ K Sbjct: 185 VFFSGSFAAIFYIKTKGVMPGLTFSNELISRDEGLHTNFACLYYNEYIPEH----DKLSS 240 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ M EA +E + +P +G+N S +Y++F+A+R + F N Sbjct: 241 ERILDMFIEAVEIEKEFFKTALPCSLLGMNTESMCRYIEFVADRLLVDLNQPKHF-MASN 299 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 PF +M+ I ++ + NFFE RV EY++ + Sbjct: 300 PFNFMTN-ISMEGKTNFFERRVGEYRRFGAGQD 331 >gi|289548460|ref|YP_003473448.1| ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484] gi|289182077|gb|ADC89321.1| Ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484] Length = 342 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 95/348 (27%), Positives = 171/348 (49%), Gaps = 17/348 (4%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67 I E +R++ +++ +L +KY WA++ Y + N W+P E+ M +D Sbjct: 6 IFNPEGDREASKRRIIKGNPTNIMELNNVKYQWAFDLYKTMGFTNFWIPEEISMMEDRKQ 65 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 ++ L+ E+ + L F + +S N++ R L+ PE + Q F+EA+H Sbjct: 66 YERV--LSAHEKRAYEMVLSFLIALDSYQV-NMLKEFARFLTAPELTMAITAQEFQEALH 122 Query: 128 SHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 S+++Q+I+ S+ E++N +RE + L + + + + D+E Sbjct: 123 SYSYQFILESVVDPVKADEIYNYWRE--------DKVLMERNRVIADLYNDFVRKQDEET 174 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 V E ++FY+GFA +LGR KM+ +Q +YI RDE H++ ++I + Sbjct: 175 FLKAVFGNYVLESLYFYSGFAFFYTLGRQGKMLSTVQQIKYINRDELTHVSLFRNIILTL 234 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 K ENP L+T E ++ + A EI + +G+N ++Y++++AN R Sbjct: 235 KKENPELFTPEMEKWVKEFFRYAASEEIKWGQYVTRNQILGINDQLIDRYIKYLANLRLT 294 Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKW 351 QIG EP+F TENP W+ + + +FF+ + Y + +ELKW Sbjct: 295 QIGYEPVFPDVTENPMKWIDTFRTINDTKTDFFQAKPQTYAKRSELKW 342 >gi|256846215|ref|ZP_05551673.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_36A2] gi|256719774|gb|EEU33329.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium sp. 3_1_36A2] Length = 344 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 85/349 (24%), Positives = 158/349 (45%), Gaps = 19/349 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + E ++ ++++ +++ L ++ WA + Y + N W+P +V + D Sbjct: 4 KKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRCQWANQLYRTMMANFWIPEKVDLTQDKN 63 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +++ LT ER L F +S+ NNI I H++ PE L Q F+EA+ Sbjct: 64 DYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAIQTFQEAI 119 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 HS ++QYII S+ + R++ + + L + + + + E Sbjct: 120 HSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFIDEQSDENF 173 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + E ++FY GF L NKMVG ++ + I RDE H+ ++ +IK Sbjct: 174 AKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMVKEIK 233 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 + P+ ++ E +M A EI + + +G+ + + E Y +++AN R Sbjct: 234 NDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANERLKS 290 Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 +GLEPLF + +NP+ + D + + NFFE VT Y + + Sbjct: 291 LGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339 >gi|297530897|ref|YP_003672172.1| ribonucleotide reductase [Geobacillus sp. C56-T3] gi|297254149|gb|ADI27595.1| ribonucleotide reductase [Geobacillus sp. C56-T3] Length = 346 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 87/327 (26%), Positives = 158/327 (48%), Gaps = 17/327 (5%) Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ++N R S+V + Y WA+ KY N W P E+ M D+ + LTD E+ Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF---PQLTDREQDAF 78 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + +G A +S+ + + ++++P ++ A +E +H+H++ Y+++SL Sbjct: 79 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E+F+ +R P++ + ++ + ++ + E L VF V+ EG++ Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEEPNVENLLRSIVFDVILEGLF 189 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 R +A LEI +A E + G++ E Y++F AN R HQ+G + F Y NP Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309 Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQ 345 W+ ++ + +FFE + +Y + Sbjct: 310 LRWIKAYEEVDLGKSDFFEQKPRQYTK 336 >gi|56551339|ref|YP_162178.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas mobilis subsp. mobilis ZM4] gi|241760992|ref|ZP_04759081.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753042|ref|YP_003225935.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542913|gb|AAV89067.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis ZM4] gi|241374611|gb|EER64072.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552405|gb|ACV75351.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 345 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 147/316 (46%), Gaps = 17/316 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA+E + HW+P EVP+ +D W L+D ER ++ + FF + Sbjct: 9 VYKPFEYPWAFEFWQRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + R E + L + E VH + +++ ++G+ E E ++ + + Sbjct: 67 DVEVQDCYFDKYGRIFRPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQY 125 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ T +DQ+ + L + EG+ + FA +++ Sbjct: 126 KEMKDKHDYLA------------TFDVGSDQDIARTLAMMGGFTEGLQLFASFAMLMNFP 173 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NKM G+ + + +RDESLH I + + E L TK+ + + +E Sbjct: 174 RFNKMKGMGQIVSWSVRDESLHCEGIIRLFHTFCQERQCL-TKQVKDDILNICQRTVRIE 232 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ G V + ++Y+++IA+ R Q+GL P++ E+P PW++ +++ + Sbjct: 233 DAFIDLVFEMGPVEGMTPKEIKKYIRYIADWRLGQLGLSPIYMIEEHPLPWLTPLLNGVE 292 Query: 332 EKNFFETRVTEYQQGA 347 NFFETR TEY + A Sbjct: 293 HANFFETRSTEYSKAA 308 >gi|313836278|gb|EFS73992.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL037PA2] gi|314928743|gb|EFS92574.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL044PA1] gi|314971220|gb|EFT15318.1| ribonucleoside-diphosphate reductase, beta subunit [Propionibacterium acnes HL037PA3] gi|328906508|gb|EGG26283.1| ribonucleotide-diphosphate reductase subunit beta [Propionibacterium sp. P08] Length = 324 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 99/314 (31%), Positives = 173/314 (55%), Gaps = 8/314 (2%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+ Y WA++ Y A N W P EV + +DLA + +T DE + + +F +E Sbjct: 13 LKPVTYPWAYDLYNQAVANTWFPNEVQLDEDLADFA---RMTPDEHHALTHLMSYFNPNE 69 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 S+ K + +++ + ++ + T + Q+F+++L + ++ EG+WFY+GF LS + Sbjct: 130 SMARKEAFEVEFIKRVTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPDIATDEFAVEIHDMILKGVEMEA 249 Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 Y + +P+G G+NA Y++++A+RR ++GLEP + + NP WM+ D + Sbjct: 250 QYNRDMLPRGIPGMNAD----YVKYLADRRLEELGLEPEY-HVANPAKWMATANDTLQLV 304 Query: 334 NFFETRVTEYQQGA 347 NFFET T Y+ A Sbjct: 305 NFFETTNTSYEVNA 318 >gi|167648664|ref|YP_001686327.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter sp. K31] gi|167351094|gb|ABZ73829.1| Ribonucleoside-diphosphate reductase [Caulobacter sp. K31] Length = 346 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 140/314 (44%), Gaps = 17/314 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y WA E + HWMP EVP+ +DL W L D ER ++ + FF S+ Sbjct: 19 KPFRYPWAHEFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSDI 76 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 VA+N + R E + L A E +H + ++ ++G+ E E F + + + Sbjct: 77 EVADNYMERYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMQYQA 135 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K ++ + + + + + L +F EG+ + FA +++ R Sbjct: 136 MRDKHDFMQK------------FGVETNADIARTLAMFGGFTEGLQLFASFAMLMNFPRF 183 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 NKM G+ + + +RDESLH I + + E T E ++E A Sbjct: 184 NKMKGMGQIVSWSIRDESLHCEGIIKLYHAFNAET-KCVTPEVAADIVECCKSVVIMEDA 242 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + + +QY++FIA+ R Q+ L ++ ENP PW+ ++ + Sbjct: 243 FIDLAFEAGEIQGMTPHDIKQYIRFIADWRLRQLHLPEVYGIKENPLPWLQSLLSGVEHA 302 Query: 334 NFFETRVTEYQQGA 347 NFFE R TEY + A Sbjct: 303 NFFEARATEYSKAA 316 >gi|172036555|ref|YP_001803056.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp. ATCC 51142] gi|171698009|gb|ACB50990.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp. ATCC 51142] Length = 352 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 158/357 (44%), Gaps = 28/357 (7%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 ++PI E ++++ + + ++ QL ++Y WA Y N W+P + + D+ Sbjct: 11 INPIFNPEGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDVTQDV 70 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + + LTDDER L + +S+ NI + ++ PE + Q +E Sbjct: 71 TDYAN---LTDDERYAYDGILSYLTFLDSVQTCNI-PHLKSSITAPEISLCMAEQISQEG 126 Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 +H+ ++QY+I ++ + ++++ +R + + + + Q DA Sbjct: 127 MHNQSYQYLIETIIPPDRRTQVYDFWRTDKVLKDRCEFIAKLYQKYID--------DATP 178 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E + + EG++FY GF +L M G A+ ++ I RDE H+ +I Sbjct: 179 ENYFIALMADFLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 238 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 + + PH ++ M A E + + + +G+ S E+Y +++AN R Sbjct: 239 EARKVFPHSV-----EQIYEMFDMAVNYECRWTNHIVGNNILGITESSTEKYTKYLANIR 293 Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 IGLEPL+ Y ++P+ + D KK + NFFE VT Y + + WD Sbjct: 294 LRSIGLEPLYPEPKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGVTGWD 350 >gi|319790519|ref|YP_004152152.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1] gi|317115021|gb|ADU97511.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1] Length = 352 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 151/350 (43%), Gaps = 18/350 (5%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 PI E + + +L + ++ L +KY WA + Y N W+P V + D+ Sbjct: 13 PIFNPEGNDDPAKRGILKGNTTNIFNLNVIKYPWATKLYRVMMANFWIPETVDLTQDVQD 72 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +K LTDDER L F +S+ NI I ++ PE L A++EA+H Sbjct: 73 YK---ELTDDERQAYDEILSFLVFLDSIQTTNI-PNIAAYVKAPEITIDLSIHAYQEAIH 128 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y I S+ E RE K + L + + ++ E Sbjct: 129 SQSYGYTIESVVPAEK------REEVYYWWKKDPILFERNKYIADIYQKFLEEPTLENYG 182 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 ++ + + EG++FY GF +L N M G A+ +YI RDE H+ + + Sbjct: 183 EVLIGNYLLEGLYFYNGFMFFYNLASRNLMQGTADIIRYINRDELTHVILFEHFMKDLTD 242 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E + + K M A E ++ + + +G+N S E Y +IAN+R + Sbjct: 243 EGFKKY--LTKDKIYDMFRIAVDQEQRFSKKVIGNKILGMNEQSIEDYTFYIANKRLKAL 300 Query: 308 GLEPLFKYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 GLEP+F NP+ + + D + NFFE VT Y Q ++ WD Sbjct: 301 GLEPIFPDRGNPYEHLERIADTGGEANVKANFFEATVTSYNQANAVEGWD 350 >gi|56419447|ref|YP_146765.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus kaustophilus HTA426] gi|56379289|dbj|BAD75197.1| ribonucleoside-diphosphate reductase beta subunit [Geobacillus kaustophilus HTA426] Length = 346 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 87/327 (26%), Positives = 158/327 (48%), Gaps = 17/327 (5%) Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ++N R S+V + Y WA+ KY N W P E+ M D+ + LTD E+ Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQF---PQLTDREQDAF 78 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + +G A +S+ + + ++++P ++ A +E +H+H++ Y+++SL Sbjct: 79 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E+F+ +R P++ + ++ + ++ + E L VF V+ EG++ Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEEPNVENLLRSIVFDVILEGLF 189 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELADF 249 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 R +A LEI +A E + G++ E Y++F AN R HQ+G + F Y NP Sbjct: 250 VRNTFMKAAELEIEWAREIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309 Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQ 345 W+ ++ + +FFE + +Y + Sbjct: 310 LRWIKAYEEVDLGKSDFFEQKPRQYTK 336 >gi|215401441|ref|YP_002332744.1| RR2b [Spodoptera litura nucleopolyhedrovirus II] gi|209483982|gb|ACI47415.1| RR2b [Spodoptera litura nucleopolyhedrovirus II] Length = 313 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 154/324 (47%), Gaps = 26/324 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+++ W Y A + W EV + D + LTD+ER I++ L FFA Sbjct: 5 RKVLFPIQHIDLWTAYKQALDCMWKVEEVDLSKDYDDFTQ--KLTDNERNFIEKILAFFA 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147 +++S+V NI+ + R + E + + +Q E +H+ + +I +L DE + N Sbjct: 63 AADSIVNINIIEHMQRTVPELEAQYFYNQQVLIECIHTEMYNLLIHALIKDEEKQATLLN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +P + KA WA++Y + + L + + + + EG++F FA Sbjct: 123 GFESMPCVRRKAEWAMKYI-------------ENENVTLAERLIAFAIVEGVFFSGSFAA 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 I + M G+ + I RDE LH NF N + + T M E Sbjct: 170 IFYMKTKGVMPGLTFSNELISRDEGLHTNFACLYYNTRVDQKLDVPT------VSDMFAE 223 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A +E+ + E +P+ VG+NA +Y++F+A+R Q+ ++ +TENPF +M+ I Sbjct: 224 AVAIEMEFFAEALPESLVGMNAEMMRKYIEFVADRLLVQLKYPKIY-HTENPFEFMNN-I 281 Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351 L+ + NFFE RV EY++ + Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGED 305 >gi|325294459|ref|YP_004280973.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064907|gb|ADY72914.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 352 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 18/350 (5%) Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 PI + + +L + ++ L +KY WA + Y N W+P V + D+ Sbjct: 13 PIFNPNGNDDPTKRGILYGNTTNIFNLNDVKYEWATKLYRVMMANFWIPETVDLTQDVLD 72 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +K LT+DER L F +S+ NI I ++ PE L A++EA+H Sbjct: 73 YK---ELTEDERQAYDEILSFLVFLDSIQTTNI-PNIAAYVKAPEITIDLSIHAYQEAIH 128 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 S ++ Y I S+ + +RE K + L + + ++ E Sbjct: 129 SQSYGYTIESVIPPQ------HRETVYYWWKKDPILFERNKYIADIYQKFLEEPTMENYG 182 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 ++ V + EG++FY GF +L N M G A+ +YI RDE H+ + + Sbjct: 183 EVLVGNYLLEGLYFYNGFMFFYNLASRNLMQGTADIIRYINRDELTHVILFEHFMKDLTD 242 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 E + + K M A E ++ + + +G+N S E+Y ++AN+R + Sbjct: 243 EEFKKYLP--KDKIYEMFKVAVNQEQRFSKKVIGNKILGMNEKSIEEYTYYVANKRLKAL 300 Query: 308 GLEPLFKYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 GL+P+F T NP+ + + D + NFFE VT Y Q + ++ WD Sbjct: 301 GLDPIFPDTPNPYEHLERIADTGGEGNVKANFFEATVTSYNQASAVEGWD 350 >gi|299472857|emb|CBN80426.1| EsV-1-128 [Ectocarpus siliculosus] Length = 419 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 84/338 (24%), Positives = 141/338 (41%), Gaps = 32/338 (9%) Query: 19 VDDKRMLNARSDVNQLLPLK----YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 V+ + D L K Y ++ Y W+ E+ M D W Sbjct: 93 VEPMCVEEEDFDRFILFNGKTEHEYADVFQLYKKQTALFWVVEEIDMSGDSKDWDDA--- 149 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + DE+ +K L FFAS + +V NI L + P+ RQ+ Q EAVH ++ + Sbjct: 150 SSDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQIRQHFAIQEATEAVHGESYSLL 209 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + D E + +P I KA WA ++ + L + V Sbjct: 210 IQTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMN-------------PETASLAERLV 256 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + EG+ F F I L + K G++ I RDE LH + + ++ + P Sbjct: 257 GFTCLEGVQFSGSFCAIYWLKKRQKFKGLSFANSLIARDEGLHATASVLIYKHLRNKLP- 315 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 Q++ + A +E + +P +G++ S +Y++F+A+ +Q+G + Sbjct: 316 ------QERVHEIFEHAVSVECEFISSALPVALIGISEKSMTEYIKFVADYWLNQLGYDK 369 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 ++ NPF WM +I L+ + NFFE RV EY + L Sbjct: 370 VYNCA-NPFEWMD-MISLQGKTNFFENRVAEYSKPGVL 405 >gi|257062099|ref|YP_003139987.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802] gi|256592265|gb|ACV03152.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802] Length = 355 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 83/357 (23%), Positives = 153/357 (42%), Gaps = 28/357 (7%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 ++PI ++++ + + ++ QL ++Y WA Y N W+P + + D+ Sbjct: 14 INPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDV 73 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + + LTDDER L + +S+ NI + ++ PE + Q +E Sbjct: 74 TDYAN---LTDDERYAYDGILSYLTFLDSVQTCNI-PHLKSSVTAPEVSLCMAEQISQEG 129 Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 +H+ ++QYII ++ E ++++ +R + + + Q Sbjct: 130 MHNQSYQYIIETIIPPERRTQVYDFWRTDKVLKERCEFIASLYQKYIDH--------PTS 181 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E + + EG++FY GF +L M G A+ ++ I RDE H+ +I Sbjct: 182 ENYFVALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 241 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 + + PH + M A E + + + +G+ S EQY +++AN R Sbjct: 242 EARKVFPHSV-----DQIYDMFDRAVKYECQWTNHIVGNNILGITEASTEQYTKYLANIR 296 Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 IGL+PL+ Y ++P+ + D KK + NFFE VT Y + + WD Sbjct: 297 LRSIGLDPLYPDIKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGITGWD 353 >gi|13242599|ref|NP_077613.1| EsV-1-128 [Ectocarpus siliculosus virus 1] gi|13177402|gb|AAK14546.1|AF204951_128 EsV-1-128 [Ectocarpus siliculosus virus 1] Length = 419 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 86/359 (23%), Positives = 149/359 (41%), Gaps = 35/359 (9%) Query: 1 MANNTGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLK----YGWAWEKYLSACNNH 53 + T P + +K ++ V+ + D L K Y ++ Y Sbjct: 72 LKRTTIHLPTEFRKKEMDGEIVEPMCVEEEDFDRFILFNGKTEHEYADVFQLYKKQTALF 131 Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W+ E+ + D W+ + DE+ +K L FFAS + +V NI L + P+ Sbjct: 132 WVVEEIDLSGDSKDWEDA---SSDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQI 188 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLS 170 RQ+ Q EAVH ++ +I + D E + +P I KA WA ++ Sbjct: 189 RQHFAIQEATEAVHGESYSLLIQTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMN--- 245 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 + L + V + EG+ F F I L + K G++ I RD Sbjct: 246 ----------PETASLAERLVGFTCLEGVQFSGSFCAIYWLKKRQKFKGLSFANSLIARD 295 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 E LH + + +K P +++ + A +E + +P +G++ Sbjct: 296 EGLHATASVLIYKHLKNRLP-------RERVHEIFKHAVSVECEFISSALPVALIGISEK 348 Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 S +Y++F+A+ +Q+G + ++ NPF WM +I L+ + NFFE RV EY + L Sbjct: 349 SMTEYIKFVADYWLNQLGYDKVYNCA-NPFEWMD-MISLQGKTNFFENRVAEYSKPGVL 405 >gi|126654703|ref|ZP_01726237.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110] gi|126623438|gb|EAZ94142.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110] Length = 352 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 83/358 (23%), Positives = 155/358 (43%), Gaps = 28/358 (7%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 ++PI ++++ + + ++ QL ++Y WA Y N W+P + + D Sbjct: 10 SINPIFNPGGDDAIENRSIWFGNTTNLMQLNDVRYAWAVGLYQQMRENFWIPQRLDVTQD 69 Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124 + + + LTDDER L + +S+ NI + ++ PE + Q +E Sbjct: 70 VTDYAN---LTDDERYAYDGILSYLTFLDSVQTCNI-PHLKSSITAPEISLCMAEQISQE 125 Query: 125 AVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +H+ ++QY+I ++ E +++ +R + + + + Q D Sbjct: 126 GMHNQSYQYLIETIIPPERRTQVYEFWRTDTVLKDRCEFIAKLYQKYID--------DPT 177 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 E + + EG++FY GF +L M G A+ ++ I RDE H+ +I Sbjct: 178 SENYFIALMADFLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLI 237 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 + + PH ++ M A E + + + +G+ S E+Y +++AN Sbjct: 238 PEARKVFPHSV-----EQIYEMFDMAVNYECRWTNHIVGNNILGITESSTEKYTKYLANI 292 Query: 303 RCHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 R IGLEPL+ Y ++P+ + D KK + NFFE VT Y + + WD Sbjct: 293 RLRSIGLEPLYPEPKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGVTGWD 350 >gi|284929768|ref|YP_003422290.1| ribonucleotide reductase, subunit beta [cyanobacterium UCYN-A] gi|284810212|gb|ADB95909.1| ribonucleotide reductase, beta subunit [cyanobacterium UCYN-A] Length = 354 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 84/356 (23%), Positives = 160/356 (44%), Gaps = 28/356 (7%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +PI + ++++ + + ++ QL ++Y WA Y N W+P ++ + D+ Sbjct: 14 NPIFNPDGDDAIENRAIWFGNTTNLMQLNDVRYSWAVGLYQQMRENFWIPQKLDITQDVT 73 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + LT+DER L + +S+ NI + ++ PE + Q +E + Sbjct: 74 DY---SNLTEDERYAYDGILSYLTFLDSIQTCNI-PHLKNSITAPEVSLCMAEQISQEGM 129 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++QYII ++ +++ +RE + ++ + + Q D E Sbjct: 130 HNQSYQYIIETIVPPDRRNQVYEFWREDKVLRSRCEFIAKIYQKYID--------DPTAE 181 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + EG++FY GF +L M G A+ ++ I RDE H+ +I + Sbjct: 182 NYFTALMADFLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIPE 241 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + PH ++ M A E + + + +G+ S EQY +++AN R Sbjct: 242 ARKVFPH-----STEQIYEMFDTAVNHECRWTNHIVGSNILGITESSTEQYTKYLANIRL 296 Query: 305 HQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 IGLEPL+ ++T++P+ + D KK + NFFE+ VT Y + + WD Sbjct: 297 RSIGLEPLYTGEEFTKSPYSHLERFSDTKKDGHTKANFFESTVTSYVMSSGVSGWD 352 >gi|257462865|ref|ZP_05627271.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp. D12] Length = 348 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 88/359 (24%), Positives = 163/359 (45%), Gaps = 20/359 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + E ++ +++++ +++ L +K+ WA + Y + N W+P +V Sbjct: 1 MKAAVDRKRLFNPEGNDSLLERKIIKGNSTNLFNLNNVKFSWATQLYRTMMANFWIPEKV 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +++ LT ER L F +S+ NN+ I +++ PE L Sbjct: 61 DLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNL-PNISDYITAPEVNLLLSI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 Q F+EA+HS ++QYII S+ E R++ + + L + + + Sbjct: 117 QTFQEAIHSQSYQYIIESILPKES------RDLIYDKWRDDKVLFERNRFIAQIYQDFIE 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + + + + + E ++FY GF L NKMVG ++ + I RDE H+ Sbjct: 171 ETSDQNFAKVLIANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQ 230 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +I +IK EN + + +++ R M A EI + + +G+ + E Y +++ Sbjct: 231 KIIREIKAENHNFF---EEEEIRAMFRTAVEQEILWTEHIIGNRILGITTETTEAYTKWL 287 Query: 300 ANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 AN R IGL P+++ T+NP+ + D + + NFFE VT Y + + WD Sbjct: 288 ANERLRTIGLAPMYEEFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 346 >gi|218249013|ref|YP_002374384.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801] gi|218169491|gb|ACK68228.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801] Length = 344 Score = 253 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 83/357 (23%), Positives = 153/357 (42%), Gaps = 28/357 (7%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 ++PI ++++ + + ++ QL ++Y WA Y N W+P + + D+ Sbjct: 3 INPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + + LTDDER L + +S+ NI + ++ PE + Q +E Sbjct: 63 TDYAN---LTDDERYAYDGILSYLTFLDSVQTCNI-PHLKSSVTAPEVSLCMAEQISQEG 118 Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 +H+ ++QYII ++ E ++++ +R + + + Q Sbjct: 119 MHNQSYQYIIETIIPPERRTQVYDFWRTDKVLKERCEFIASLYQKYIDI--------PTS 170 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E + + EG++FY GF +L M G A+ ++ I RDE H+ +I Sbjct: 171 ENYFVALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 230 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 + + PH + M A E + + + +G+ S EQY +++AN R Sbjct: 231 EARKVFPHSV-----DQIYDMFDRAVKYECQWTNHIVGNNILGITEASTEQYTKYLANIR 285 Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 IGL+PL+ Y ++P+ + D KK + NFFE VT Y + + WD Sbjct: 286 LRSIGLDPLYPDIKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGITGWD 342 >gi|119485472|ref|ZP_01619800.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106] gi|119457228|gb|EAW38354.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106] Length = 359 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 158/357 (44%), Gaps = 28/357 (7%) Query: 7 LSPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 ++PI E +V+++ + +++ QL ++Y WA Y N W+P ++ + D+ Sbjct: 18 INPIFNPEGNDHVENRSIWFGDTTNLMQLNDVRYPWAVGLYKQMRENFWVPEKLDITQDV 77 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + LT DER L + +S+ NI + ++ PE + Q +EA Sbjct: 78 VDY---GNLTTDERRAFDGILSYLTFLDSIQTCNI-PHLKSSITAPEISLCMAEQVSQEA 133 Query: 126 VHSHTFQYIITSLGLDEGELF--NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 +H+ ++QY+I ++ + F +R + + + ++ Q + Sbjct: 134 MHNQSYQYMIETIIPSDRRSFVYEFWRTDSVLHNRCEYIARFYQNYID--------NPTS 185 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E + + EG++FY GF +L M G A+ ++ I RDE H+ +I Sbjct: 186 ENYFVALLADFLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 245 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 + PH ++ M A E + + + + +G+ S EQY +++AN R Sbjct: 246 EAMQTFPHSV-----EQIYEMFDTAVQHECRWTNHIVGRNILGITETSTEQYTKYLANAR 300 Query: 304 CHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAEL-KWD 352 IGL+PL+ +Y+++P+ + D KK + NFFE VT Y + + WD Sbjct: 301 LRSIGLKPLYTDPRYSKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVGGWD 357 >gi|330814259|ref|YP_004358498.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327487354|gb|AEA81759.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 345 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 78/316 (24%), Positives = 144/316 (45%), Gaps = 16/316 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y W ++ +L+ HW+P EVP+ +D+ W+ L E+ ++ + FF + Sbjct: 32 VYKPFRYPWCYDAWLTQQRIHWLPEEVPLAEDVRDWQK--KLLPHEKNLLTQIFRFFTQA 89 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V N + E + A E VH + +++ ++G+ E E ++ + + Sbjct: 90 DVEVNNCYLRHYTTVFKPTEVLMMMTAFASMETVHVAAYSHLLDTIGMPETE-YSAFLKY 148 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + K ++ +E + + VF EG+ + FA +L+ Sbjct: 149 KEMKDKYDYM------------QNFNMGDKREIAKTVAVFSAFTEGLQLFASFAILLNFP 196 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R NKM G+ + + +RDE+LH N I + N ENP L +++ E Sbjct: 197 RFNKMKGMGQIVTWSVRDETLHCNSMIKIFNTFCDENPGLLDDSLKKEIYEACSTIIEHE 256 Query: 273 IAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 A+ G + L A ++Y+++IANRR Q+ L L++ ENP W+ ++++ + Sbjct: 257 DAFIDLAFEMGDIEGLKAEEVKKYIRWIANRRLAQLRLNDLYEVKENPLTWLDDMLNGVE 316 Query: 332 EKNFFETRVTEYQQGA 347 NFFE R TEY + + Sbjct: 317 HMNFFEGRATEYSKAS 332 >gi|165969130|ref|YP_001651030.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV] gi|164663626|gb|ABY65846.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV] Length = 339 Score = 251 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 90/330 (27%), Positives = 148/330 (44%), Gaps = 20/330 (6%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +LP+++ W Y +A + W EV + D W + L + ER IK L FFA Sbjct: 7 RKVILPIQHEKLWRAYKTALDCMWKVEEVDLSRDYEDWCT--KLNERERFFIKHILAFFA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147 S++S+V N++ + + E R + +Q E VHS + +I +E E N Sbjct: 65 SADSIVNINLIDYVRDAVGELEARYFYDQQILIENVHSEMYSLLIFEYIKNEKEQNELLN 124 Query: 148 MYREVPSITAKANWALQYTQTLS---------SPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + +V + KA WAL++T++ + T + L V + + EG Sbjct: 125 AFEDVKCVRKKAQWALKWTESSWWRDWLVNPLVKLWRTWRDGSSASKLARRMVAFAIVEG 184 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I + M G+ + I RDE LH NF N E K Sbjct: 185 VFFSGSFAAIFFIKTKGIMPGLTFSNELISRDEGLHTNFACLYYN----EYIDERDKMSS 240 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + M EA +E + +P +G+N+ + +Y++F+A+R ++ F T N Sbjct: 241 AEILDMFVEAVNIEKEFFTSALPCDLLGMNSRAMCEYIEFVADRLLTELQQPKHFN-TPN 299 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 PF +M+ I L+ + NFFE RV EY++ Sbjct: 300 PFNFMNN-ISLEGKTNFFERRVGEYKRFGA 328 >gi|115691069|ref|XP_001203692.1| PREDICTED: similar to ribonuleotide reductase small subunit, partial [Strongylocentrotus purpuratus] gi|115735426|ref|XP_798682.2| PREDICTED: similar to ribonuleotide reductase small subunit, partial [Strongylocentrotus purpuratus] Length = 258 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 73/302 (24%), Positives = 128/302 (42%), Gaps = 50/302 (16%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 + W EV + +D W+ L +E+ + L FFA+S+ +V N+V + + P Sbjct: 1 SFWTTEEVDLGEDWKDWQ---KLKPEEKHFVTHVLAFFAASDGIVNENLVERFSQEVQIP 57 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQT 168 E + + Q E +HS + +I + D E FN + +P + KA+WAL++ + Sbjct: 58 EAKCFYGFQIAMENIHSEMYSLLIDTYVKDPTEKHRLFNAIQTMPFVKKKADWALKWIAS 117 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 D+ + V + EG++F FA I + + G+ + I Sbjct: 118 -------------DESTFAERLVAFAAVEGIFFSGSFAAIFWFKKRGLLPGLTFSNELIS 164 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 RDE LH +F + + + P + + ++ +A LE Y E +P +G+N Sbjct: 165 RDEGLHCDFACLLFSHLNHPTP-------VSRIQEIIRDAVRLEEEYLSEALPVALIGMN 217 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 A QY+QF+A+R ++ + NFFE RV EYQ+ Sbjct: 218 ARLMCQYIQFVADRLLMEL------------------------KSNFFEKRVGEYQKMNV 253 Query: 349 LK 350 + Sbjct: 254 MT 255 >gi|317060491|ref|ZP_07924976.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D12] gi|313686167|gb|EFS23002.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium sp. D12] Length = 344 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 87/350 (24%), Positives = 162/350 (46%), Gaps = 20/350 (5%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + E ++ +++++ +++ L +K+ WA + Y + N W+P +V + D + Sbjct: 6 LFNPEGNDSLLERKIIKGNSTNLFNLNNVKFSWATQLYRTMMANFWIPEKVDLTQDKNDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ LT ER L F +S+ NN+ I +++ PE L Q F+EA+HS Sbjct: 66 EN---LTVPEREAYDGILSFLIFLDSIQTNNL-PNISDYITAPEVNLLLSIQTFQEAIHS 121 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++QYII S+ E R++ + + L + + ++ + Sbjct: 122 QSYQYIIESILPKES------RDLIYDKWRDDKVLFERNRFIAQIYQDFIEETSDQNFAK 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + + + E ++FY GF L NKMVG ++ + I RDE H+ +I +IK E Sbjct: 176 VLIANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKIIREIKAE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 N + + +++ R M A EI + + +G+ + E Y +++AN R IG Sbjct: 236 NHNFF---EEEEIRAMFRTAVEQEILWTEHIIGNRILGITTETTEAYTKWLANERLRTIG 292 Query: 309 LEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 L P+++ T+NP+ + D + + NFFE VT Y + + WD Sbjct: 293 LAPMYEEFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342 >gi|38683666|gb|AAR26843.1| FirrV-1-A19 [Feldmannia irregularis virus a] Length = 342 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 79/323 (24%), Positives = 142/323 (43%), Gaps = 28/323 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +NQ ++ + Y W E+ + +D+A W + ++DE+ I L FFA Sbjct: 32 LNQKTEFEFADVYALYKKEIACFWTVEEIDLNEDVACW---DKCSEDEQRFIGHILAFFA 88 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147 S + +V N+ + + P+ R + Q E++H T+ +I + D + + Sbjct: 89 SLDQIVMENVSVNFGDEIKIPQIRSHFAMQNAIESIHGETYALLIQTYIKDPEKQVTMLR 148 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +E+P IT KA W + D + L + V + EG+ F F Sbjct: 149 SIQEMPIITKKAQWVTAWM-------------DPEVASLAERLVAFTCVEGVQFSGAFCA 195 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 I L + + G+ I RDE LH + + N +K P + + Sbjct: 196 IYWLKKQGRFRGLCFANSLIARDEGLHAEGSVMIYNHLKHRLP-------VAVVHDIFTD 248 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A LE + E++P +G+NA + Y++++++ ++G LF T+NPF WM+ +I Sbjct: 249 AVALEKEFIRESLPVSLIGINADTMSSYIEYVSDFWIQRLGYPKLFG-TKNPFEWMT-MI 306 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 ++ + NFFE RV EY + + Sbjct: 307 GMEGKSNFFEGRVAEYAKAGSMT 329 >gi|134301991|ref|YP_001121960.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis WY96-3418] gi|134049768|gb|ABO46839.1| biofunctional glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase beta subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 410 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 101 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 +T K ++ + T + L V EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDR 325 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 326 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 385 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY+ WD Sbjct: 386 NFFENRVTEYEVAGLTGSWD 405 >gi|269862698|ref|XP_002650940.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220065381|gb|EED43116.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 332 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 77/306 (25%), Positives = 130/306 (42%), Gaps = 30/306 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 54 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 110 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D Sbjct: 111 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 170 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E FN +PSI KA WA ++ A V + EG Sbjct: 171 KEEQTYLFNAIENIPSIRKKALWAQKWI--------------ASDTSFDTRCVAFACVEG 216 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + I + Sbjct: 217 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNKCT-------- 268 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ EA +E + E++P +G+N QY++F+A+R +G + ++ + Sbjct: 269 -VIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVST- 326 Query: 319 PFPWMS 324 PF +M Sbjct: 327 PFDFME 332 >gi|118497575|ref|YP_898625.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. novicida U112] gi|195536272|ref|ZP_03079279.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella tularensis subsp. novicida FTE] gi|208779374|ref|ZP_03246720.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella novicida FTG] gi|254372936|ref|ZP_04988425.1| hypothetical protein FTCG_00507 [Francisella tularensis subsp. novicida GA99-3549] gi|118423481|gb|ABK89871.1| bifunctional protein: glutaredoxin 3 /ribonucleotide reductase beta subunit [Francisella novicida U112] gi|151570663|gb|EDN36317.1| hypothetical protein FTCG_00507 [Francisella novicida GA99-3549] gi|194372749|gb|EDX27460.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella tularensis subsp. novicida FTE] gi|208745174|gb|EDZ91472.1| ribonucleoside-diphosphate reductase, beta subunit domain [Francisella novicida FTG] gi|332678274|gb|AEE87403.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Francisella cf. novicida Fx1] Length = 410 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 101 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 +T K ++ + T + L V EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDK 325 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 326 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 385 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY+ WD Sbjct: 386 NFFENRVTEYEVAGLTGSWD 405 >gi|56707665|ref|YP_169561.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis SCHU S4] gi|110670136|ref|YP_666693.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis FSC198] gi|187931834|ref|YP_001891819.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. mediasiatica FSC147] gi|224456732|ref|ZP_03665205.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis MA00-2987] gi|254370173|ref|ZP_04986179.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874478|ref|ZP_05247188.1| nrdB, biofunctional protein, glutaredoxin 3 protein/ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|56604157|emb|CAG45165.1| Biofunctional protein, glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|110320469|emb|CAL08548.1| Biofunctional protein, glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis FSC198] gi|151568417|gb|EDN34071.1| hypothetical protein FTBG_01287 [Francisella tularensis subsp. tularensis FSC033] gi|187712743|gb|ACD31040.1| bifunctional protein: glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|254840477|gb|EET18913.1| nrdB, biofunctional protein, glutaredoxin 3 protein/ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|282158827|gb|ADA78218.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. tularensis NE061598] Length = 410 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 101 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 +T K ++ + T + L V EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDR 325 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 326 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 385 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY+ WD Sbjct: 386 NFFENRVTEYEVAGLTGSWD 405 >gi|254374389|ref|ZP_04989871.1| glutaredoxin [Francisella novicida GA99-3548] gi|151572109|gb|EDN37763.1| glutaredoxin [Francisella novicida GA99-3548] Length = 410 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 101 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 +T K ++ + T + L V EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDK 325 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 326 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 385 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY+ WD Sbjct: 386 NFFENRVTEYEVAGLTGSWD 405 >gi|138894466|ref|YP_001124919.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus thermodenitrificans NG80-2] gi|196247935|ref|ZP_03146637.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16] gi|134265979|gb|ABO66174.1| Ribonucleoside-diphosphate reductase beta subunit [Geobacillus thermodenitrificans NG80-2] gi|196212719|gb|EDY07476.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16] Length = 344 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 87/327 (26%), Positives = 158/327 (48%), Gaps = 17/327 (5%) Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 M+N R S+V + Y WA+ KY N W P E+ M D+ + LT E+ Sbjct: 20 MINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQF---PQLTAREQDAF 76 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141 + +G A +S+ + + ++++P ++ A +E +H+H++ Y+++SL Sbjct: 77 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 135 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 + E+F+ +R P++ + ++ + + + E L VF V+ EG++ Sbjct: 136 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEKPNVENLLRSIVFDVILEGLF 187 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E Sbjct: 188 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELADF 247 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319 +R+ +A LEI +A E + G++ E Y++F AN R HQ+G + F Y NP Sbjct: 248 ARSTFMKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 307 Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQ 345 W+ ++ + +FFE + +Y + Sbjct: 308 LRWIKAYEEVDLGKSDFFEQKPRQYTK 334 >gi|254369307|ref|ZP_04985319.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp. holarctica FSC022] gi|157122257|gb|EDO66397.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp. holarctica FSC022] Length = 410 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 101 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 +T K ++ + T + L V EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDR 325 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 326 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 385 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY+ WD Sbjct: 386 NFFENRVTEYEVAGLTGSWD 405 >gi|89256330|ref|YP_513692.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica LVS] gi|115314778|ref|YP_763501.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica OSU18] gi|156502403|ref|YP_001428469.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010840|ref|ZP_02275771.1| ribonucleotide-diphosphate reductase beta subunit [Francisella tularensis subsp. holarctica FSC200] gi|254367665|ref|ZP_04983686.1| biofunctional protein: glutaredoxin 3 protein-ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. holarctica 257] gi|290952877|ref|ZP_06557498.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica URFT1] gi|295313922|ref|ZP_06804487.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella tularensis subsp. holarctica URFT1] gi|89144161|emb|CAJ79423.1| Biofunctional protein, glutaredoxin 3 protein/Ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. holarctica LVS] gi|115129677|gb|ABI82864.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp. holarctica OSU18] gi|134253476|gb|EBA52570.1| biofunctional protein: glutaredoxin 3 protein-ribonucleoside-diphosphate reductase, beta subunit [Francisella tularensis subsp. holarctica 257] gi|156253006|gb|ABU61512.1| bifunctional glutaredoxin /ribonucleoside-diphosphate reductase beta subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 410 Score = 249 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 101 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 +T K ++ + T + L V EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDR 325 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 326 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 385 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY+ WD Sbjct: 386 NFFENRVTEYEVAGLTGSWD 405 >gi|332184137|gb|AEE26391.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Francisella cf. novicida 3523] Length = 410 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 82/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 101 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 +T K ++ + T + L V EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + ++ +RDES+H+ + ENP++ +F+++ M +A LE Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELEDK 325 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 326 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 385 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY+ WD Sbjct: 386 NFFENRVTEYEVAGLTGSWD 405 >gi|9634266|ref|NP_037805.1| ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera exigua MNPV] gi|6960505|gb|AAF33575.1|AF169823_45 ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera exigua MNPV] Length = 313 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 154/324 (47%), Gaps = 26/324 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+++ W Y A + W EV + D + LTD+ER I++ L FFA Sbjct: 5 RKVLFPIQHIDLWASYKQALDCMWKVEEVDLSKDYDDFTQ--KLTDNERNFIEKILAFFA 62 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147 +++S+V NI+ + R + E + + +Q + +H+ + +I +L DE + N Sbjct: 63 AADSIVNINIIEHMQRTVPELEAQYFYNQQVLIQCIHTEMYNLLIHALIKDEKKQEMLLN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +P + KA WA++Y D ++ L + V + + EG++F FA Sbjct: 123 GFENMPCVRRKAEWAMKYI-------------DDEKITLAERLVAFAIVEGVFFSGSFAA 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 I + M G+ + I RDE LH NF N + T M E Sbjct: 170 IFYMKTKGVMPGLTFSNELISRDEGLHTNFACLYYNTRVDQKLDAPT------VNDMFSE 223 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A +E+ + E +P+ VG+NA +Y++F+A+R Q+ ++ YTENPF +M+ I Sbjct: 224 AVAIEMEFFAEALPESLVGMNANMMRKYIEFVADRLLVQLKYPKMY-YTENPFEFMNN-I 281 Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351 L+ + NFFE RV EY++ + Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGED 305 >gi|332708567|ref|ZP_08428541.1| ribonucleotide reductase, beta subunit [Lyngbya majuscula 3L] gi|332352664|gb|EGJ32230.1| ribonucleotide reductase, beta subunit [Lyngbya majuscula 3L] Length = 344 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 81/357 (22%), Positives = 150/357 (42%), Gaps = 28/357 (7%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 ++PI + + + + + ++ QL ++Y WA Y N W+P ++ + D+ Sbjct: 3 INPIFNPDGDDKTEHRSIWFGNTTNLMQLNDVRYAWAIGLYQQMRENFWIPQKLDLTQDV 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + + LT ER L + +S+ NI I ++ PE + Q +E Sbjct: 63 TDY---SNLTPAERYAYDGILSYLTFLDSVQTCNI-PHIKSSITAPEVSLCMAEQISQEG 118 Query: 126 VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 +H+ ++QYII ++ E +++ +R + + + + Q + Sbjct: 119 MHNQSYQYIIETVIPTEHRSKVYEFWRTDKVLRDRCEFVASFYQKYVD--------NPTP 170 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E + + EGM+FY GF +L M G A+ ++ I RDE H+ +I Sbjct: 171 ENYFVSLLADFLLEGMYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 230 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 P+ ++ M A E + + + +G+ S E Y +++AN R Sbjct: 231 MAMDVFPY-----SSEQIYEMFATAVEHECRWTNHIVGNDILGITERSTEHYTKYLANIR 285 Query: 304 CHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 IGL+PL+ Y ++P+ + D KK + NFFE VT Y + + WD Sbjct: 286 LRSIGLDPLYKGENYQKSPYSHLERFSDTKKDAHTKANFFEASVTSYVMSSGVSGWD 342 >gi|57339646|gb|AAW49810.1| hypothetical protein FTT0532 [synthetic construct] Length = 445 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 127 KPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 185 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 186 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 244 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 +T K ++ + T + L V EG+ + FA +L+ R Sbjct: 245 MTDKIDFMMDADPT-------------TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 291 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE Sbjct: 292 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDR 351 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A +QY++ I +RR +Q+GL+ ++ +NP W+ +++ Sbjct: 352 FIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHT 411 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY+ WD Sbjct: 412 NFFENRVTEYEVAGLTGSWD 431 >gi|319942042|ref|ZP_08016361.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella wadsworthensis 3_1_45B] gi|319804426|gb|EFW01304.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella wadsworthensis 3_1_45B] Length = 344 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 88/318 (27%), Positives = 139/318 (43%), Gaps = 18/318 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y WA+E ++ + HW+ TEVPM +D+ ++ LTD ER + + L FF Sbjct: 30 RDYYKPFQYPWAYEAFMQSEQMHWLWTEVPMLEDVKDYQQ--KLTDSERDFLTKILRFFT 87 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 + V+ V + PE R L A EAVH + ++I +LGL E Sbjct: 88 QGDIDVSGAYVNSYLPRFKQPEVRMMLSSFAAREAVHIAAYSHLIETLGLPESI------ 141 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 N LQY + F + + F EGM ++ F +L+ Sbjct: 142 --------YNEFLQYEAMAAKHDFFNEVCRDKGDLAAQIAAFSAFTEGMQLFSSFVMLLN 193 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 R M G+ + + + DE+LH + + ENP LWT E + K + Sbjct: 194 FTRCGTMKGMGQIIAWSIADETLHTESMTKIFREYITENPELWTDELKAKIYGIAEVMVD 253 Query: 271 LEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 LE + + Y+++IA+RR +GL+ +FK T NP PW+ ++ + Sbjct: 254 LEDKFIDLAFGVSEMKRLTREDVRSYIRYIADRRLMGLGLKGIFKSTTNPLPWVDAMLGV 313 Query: 330 KKEKNFFETRVTEYQQGA 347 NFFE RV +Y +GA Sbjct: 314 T-HTNFFENRVVDYAKGA 330 >gi|67906414|gb|AAY82584.1| ribonucleotide reductase subunit 2 [Carassius carassius] Length = 246 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 26/269 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P++Y W+ Y A + W EV + DL W + L D+ER Sbjct: 1 EPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHW---DSLKDEERYF 57 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+V + + E R + Q E +HS + +I + D Sbjct: 58 ISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKD 117 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E FN +P + KA+WAL + + V + EG Sbjct: 118 PKERDFLFNAIETMPCVKKKADWALNWI-------------GDKNAQYGERVVAFAAVEG 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + HL K + Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVNKPSE 217 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGL 287 + + ++ A +E + + +P +G+ Sbjct: 218 ETVKKIIVNAVAIEQEFLTDALPVKLIGM 246 >gi|307171465|gb|EFN63309.1| Ribonucleoside-diphosphate reductase subunit M2 [Camponotus floridanus] Length = 343 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 72/316 (22%), Positives = 128/316 (40%), Gaps = 42/316 (13%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 ++ + +Q E+ N + + +L + + P++Y W+ Y A + W EVP Sbjct: 42 LSKTKAVQKVQLKEE-FNPELEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASFWTIEEVP 100 Query: 61 MQD-DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D W+ L DER I L FFA+S+ +V N++ + + E R + Sbjct: 101 LHKLDKKDWEE--KLNSDERYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYGF 158 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTT 176 Q E +HS + +I + D E FN +PS+ KANWAL + Sbjct: 159 QIAIENIHSEMYSLLIETYISDPKEKDFLFNAIETLPSVGKKANWALNWINH-------- 210 Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236 E F I L + M G+ + I RDE LH + Sbjct: 211 --------------------ESATFPERVVAIFWLKKRGVMPGLTFSNELISRDEGLHCD 250 Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296 F + H+ K ++ ++++ +A +E + + +P +G+N Y+ Sbjct: 251 FACLMFK-------HIVQKPSFERVKSIIMDAVEIEQEFLTQALPVQLIGMNCTLMCSYI 303 Query: 297 QFIANRRCHQIGLEPL 312 +F+A+R +G E + Sbjct: 304 EFVADRLFVALGFEKV 319 >gi|307151334|ref|YP_003886718.1| ribonucleotide reductase [Cyanothece sp. PCC 7822] gi|306981562|gb|ADN13443.1| ribonucleotide reductase [Cyanothece sp. PCC 7822] Length = 355 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 84/363 (23%), Positives = 156/363 (42%), Gaps = 28/363 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 ++ ++PI ++++ M +++ QL ++Y WA Y N W+P + Sbjct: 8 LSERMPITPIFNPNGDDRIENRTMWFGNITNLMQLNDVRYTWAVGLYKQMRENFWIPERL 67 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D+ + LT+DER + L + +S+ NI + ++ PE + Sbjct: 68 DITQDVTDY---WNLTEDERYAFEGILSYLTFLDSVQTCNI-PHLKASVTAPEISLCMAE 123 Query: 120 QAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 Q +E +H+ +QY+I ++ E+++ +R + A+ + Q + Sbjct: 124 QISQEGMHNQAYQYMIETIIPLERRSEVYDFWRTDKVLKARCEFIAGLYQKYIN------ 177 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 + + + + EG++FY GF +L M G A+ ++ I RDE H+ Sbjct: 178 --QPNIDNYFTALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRL 235 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 +I + PH K M A E + + + +G+ S EQY + Sbjct: 236 YQKIIAEAMQTFPHSVDK-----VYEMFDTAVHHECRWTNHIVGDNILGITESSTEQYTK 290 Query: 298 FIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 ++AN R IGL+PL+ KY ++P+ + D KK + NFFE VT Y + + Sbjct: 291 YLANIRLKAIGLKPLYADEKYQKSPYSHLERFSDTKKDAHTKANFFEATVTSYVMSSGVT 350 Query: 351 -WD 352 WD Sbjct: 351 GWD 353 >gi|328722535|ref|XP_001944897.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like [Acyrthosiphon pisum] Length = 345 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 75/322 (23%), Positives = 135/322 (41%), Gaps = 28/322 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L + P+ Y W Y + W V ++ DL W +TD+ER Sbjct: 38 EPLLKDNPRRFVIFPIIYDNIWAMYKKHEASLWNIEAVNLKSDLEDW---MRMTDEERHF 94 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L F A+S +V+ N+V + + E R + Q E +HS + +I + D Sbjct: 95 ISYILAFLAASNGIVSENLVKRFSQEVQVTEARCFYGFQIMIENIHSEMYSLLIDTYIKD 154 Query: 142 EGELF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E N +P + A+W L++ D+ F + L F V +G Sbjct: 155 PKEKETLINATETMPCVKKMADWVLKWI------------TDSKATFGERLVTFAAV-KG 201 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++ I L + M+G+ + I RDE LH +F + HL K Sbjct: 202 IFLSGNVPSITWLTKRGLMLGLTFSNELIFRDEGLHTDFACLLFK-------HLDQKPPL 254 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ +A +E + + VG++ +Y++F+A+R +++G ++ + N Sbjct: 255 TVITHIICKAVTIEQYFLTNALLVKMVGMSCEKMAEYIEFVADRLLNELGCPAVY-RSSN 313 Query: 319 PFPWMSEVIDLKKEKNFFETRV 340 PFP+M ++ + + N FE RV Sbjct: 314 PFPFMD-LLSQQGKTNGFEKRV 334 >gi|269865122|ref|XP_002651812.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063829|gb|EED42244.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 336 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 75/304 (24%), Positives = 127/304 (41%), Gaps = 29/304 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E FN +PSI KA WA ++ A V + EG Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWI--------------ASDTSFDTRCVAFACVEG 188 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F FA I L + M G+ + I RDE LH +F + I + Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNKCT-------- 240 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 ++ EA +E + E++P +G+N QY++F+A+R +G ++ + + Sbjct: 241 -VIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGERKIYTFLTH 299 Query: 319 PFPW 322 W Sbjct: 300 SISW 303 >gi|197322443|ref|YP_002154716.1| putative ribonucleotide reductase small subunit [Feldmannia species virus] gi|197130510|gb|ACH46846.1| putative ribonucleotide reductase small subunit [Feldmannia species virus] Length = 342 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 76/338 (22%), Positives = 141/338 (41%), Gaps = 32/338 (9%) Query: 20 DDKRMLNARSDVNQLLP----LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 + ++ D L +Y + Y W E+ + +D+ W + + Sbjct: 17 EPMCHEDSEFDRFILFNQKSEFEYADVYALYKKEIACFWTVEEMDLSEDVECW---DKSS 73 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 DE+ I L FFAS + +V N+ + + P+ R + Q E++H + +I Sbjct: 74 SDEQHFIIHILAFFASLDQIVMENVSVNFGDEIVIPQVRSHFAIQNAIESIHGEAYSILI 133 Query: 136 TSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 + + + ++ +E+P I KA W + D + L + V Sbjct: 134 QTYVKNSQQQSKILRSVQEMPIIRKKAQWVTSWM-------------DPETCSLAERLVA 180 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG+ F F I L + + G+ I RDE LH + + N +K P Sbjct: 181 FTCVEGVQFSGAFCAIYWLKKQGRFRGLCFANSLIARDEGLHAEGSVMIYNHLKHRLP-- 238 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 + +AT +E + E +P +G+NA + Y+++I++ ++G L Sbjct: 239 -----VAVVHDIFGQATTIEKEFIREALPVSLIGINAGTMSTYIEYISDFWLEKLGYPKL 293 Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 F ++NPF WM+ +I ++ + NFFE RV EY + + Sbjct: 294 FN-SKNPFEWMT-MIGMEGKSNFFEGRVAEYSKAGSMT 329 >gi|326483608|gb|EGE07618.1| hypothetical protein TEQG_06532 [Trichophyton equinum CBS 127.97] Length = 317 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 118/283 (41%), Gaps = 28/283 (9%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A + P + ++ L L P+KY W+ Y A + W E+ + Sbjct: 60 AETQVVKP---KTPKELEAEEPRLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDL 116 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D+ W N L DDER I L FFA+S+ +V N++ + PE R + Q Sbjct: 117 SKDIHDWN--NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQI 174 Query: 122 FEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E +HS T+ +I + ++ + F +P I KA+WA+++ Q Sbjct: 175 MMENIHSETYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ----------- 223 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 D + F Q L F V EG++F FA I L + M G+ + I RDE LH +F Sbjct: 224 -DKNSTFSQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 281 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + + HL + ++ EA +E + + +P Sbjct: 282 CLLFS-------HLNYRPDPNAVEAIITEAVTIEQEFLTDALP 317 >gi|218442220|ref|YP_002380549.1| ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424] gi|218174948|gb|ACK73681.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424] Length = 355 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 82/363 (22%), Positives = 155/363 (42%), Gaps = 28/363 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 ++ +PI + ++++ M +++ QL ++Y WA Y N W+P + Sbjct: 8 LSQTMPKTPIFNPDGDDRIENRTMWFGNITNLMQLNDVRYNWAVGLYKQMRENFWIPERL 67 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D+ + LTD+ER L + +S+ NI + ++ PE + Sbjct: 68 DITQDVTDY---WNLTDEERYAFDGILSYLTFLDSIQTCNI-PHLKSSVTAPEISLCMAE 123 Query: 120 QAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 Q +E +H+ +QY+I ++ ++++ +R + A+ + Q Sbjct: 124 QISQEGMHNQAYQYMIETIIPLEKRNQVYDFWRTDKVLKARCEFIAGLYQKYIDT----- 178 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 E + + EG++FY GF +L M G A+ ++ I RDE H+ Sbjct: 179 ---PSIENYFVALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRL 235 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 +I + PH ++ M A E + + + +G+ S EQY + Sbjct: 236 YQRIIVEAMETFPHSV-----EQIYEMFDTAVQHECRWTNHIVGDNILGITESSTEQYTK 290 Query: 298 FIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350 ++AN R + IGL+PL++ Y ++P+ + D KK + NFFE VT Y + + Sbjct: 291 YLANHRLNTIGLKPLYEDEKYKKSPYSHLERFSDTKKDAHTKANFFEATVTSYVMSSGVT 350 Query: 351 -WD 352 WD Sbjct: 351 GWD 353 >gi|116326775|ref|YP_803312.1| hypothetical protein TNAV2c_gp089 [Trichoplusia ni ascovirus 2c] gi|102231783|gb|ABF70606.1| hypothetical protein [Trichoplusia ni ascovirus 2c] Length = 269 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 74/279 (26%), Positives = 126/279 (45%), Gaps = 27/279 (9%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y A + W EV + DL+ W + L DDE+ IK L FFA+S+ +V N+V Sbjct: 1 MYKKAEASFWTVEEVDLSKDLSDW---DKLKDDEKHFIKHILAFFAASDGIVNENLVERF 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161 + + E R + Q E VHS + +I + D E FN +P I KA+W Sbjct: 58 SQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIRDSDERDYLFNAIETLPCIKKKADW 117 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 AL++ ++ + V + EG++F FA I L + + G+ Sbjct: 118 ALKWI-------------SSNSANFAERIVAFAAVEGIFFSGSFASIFWLKKRGLLPGLT 164 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I RDE LH +F + N + + P+ + +L EA ++E + + +P Sbjct: 165 FSNELISRDEGLHTDFACLMYNYVVQKPPN-------SRVIEILKEAVVIEKDFLTDALP 217 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 +G+N QY++F+A+R +++ E + +NP Sbjct: 218 VRLLGMNCDLMSQYIEFVADRLLYELIGEKYYN-AKNPI 255 >gi|330998673|ref|ZP_08322403.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella excrementihominis YIT 11859] gi|329576534|gb|EGG58042.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella excrementihominis YIT 11859] Length = 327 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 147/321 (45%), Gaps = 21/321 (6%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 N P Y WA++ ++++ HW+ TEVPM +D+ WK N LTD ER + + FF Sbjct: 9 RNYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWK--NVLTDGERDFLTKVFRFFT 66 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 + V++ V PE R L A EAVH + ++I ++G+ E Sbjct: 67 QGDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPETV------ 120 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ-DLFVFYVVFEGMWFYTGFAQIL 209 N LQY F G + QE + + F EGM ++ F +L Sbjct: 121 --------YNEFLQYEAMAEKHDFFHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLL 172 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + R M G+ + + + DE+LH I + + IENP LWT +++ + + Sbjct: 173 NFTRNGTMKGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMI 232 Query: 270 LLEIAYAHETMPKGFV---GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 LE A+ + L+ + Y+++I +RR +G++ +FK NP PW+ + Sbjct: 233 ELEDAFIDLAFGVNDMSKQNLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDSM 292 Query: 327 IDLKKEKNFFETRVTEYQQGA 347 + + NFFE RV +Y +GA Sbjct: 293 LGVT-HTNFFENRVVDYAKGA 312 >gi|239826135|ref|YP_002948759.1| ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70] gi|239806428|gb|ACS23493.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70] Length = 346 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 82/338 (24%), Positives = 155/338 (45%), Gaps = 16/338 (4%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 + N + + S+V + Y WA+ KY N W P E+ M D+ + Sbjct: 11 MDPEAPNRSTRIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF--- 67 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 LT+ E+ + +G A +S+ + + ++++ ++ A +E +H+H++ Sbjct: 68 PNLTEREQDAFLKIIGLLALLDSIQTD-YAGRVADYITDSSINALMIMLAQQEVIHNHSY 126 Query: 132 QYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 Y+++SL + E+F +R P + + ++ + ++ + E L Sbjct: 127 SYVLSSLVPKSKQDEVFEFWRNEPILRKRNDFVTN--------GYKAFAENPNVENLLKS 178 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 V+ V+ EG++FY+GFA +L R KMV + YI RDE +H++ + ++ E Sbjct: 179 IVYDVILEGLFFYSGFAFFYNLARNQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEY 238 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 P T E Q R +A LEI +A+ + G++ Y++F AN R HQ+G Sbjct: 239 PEYNTPELAQFVRETFIKAAKLEIEWANYIIGNDIDGIDMHDLSAYIKFYANVRAHQLGF 298 Query: 310 EPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQ 345 + F Y NP W+ ++ + +FFE + +Y + Sbjct: 299 DRPFDGYRTNPLRWIKAYEEVDLGKSDFFEQKSRQYTK 336 >gi|295401051|ref|ZP_06811025.1| Ribonucleoside-diphosphate reductase [Geobacillus thermoglucosidasius C56-YS93] gi|312112173|ref|YP_003990489.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1] gi|294976844|gb|EFG52448.1| Ribonucleoside-diphosphate reductase [Geobacillus thermoglucosidasius C56-YS93] gi|311217274|gb|ADP75878.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1] Length = 346 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 81/338 (23%), Positives = 155/338 (45%), Gaps = 16/338 (4%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 + N + + S+V + Y WA+ KY N W P E+ M D+ + Sbjct: 11 MDPEAPNRSTRIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF--- 67 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 LT+ E+ + +G A +S+ + + ++++ ++ A +E +H+H++ Sbjct: 68 PLLTEREQDAFLKIIGLLALLDSIQTD-YAGRVADYITDSSINALMIMLAQQEVIHNHSY 126 Query: 132 QYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 Y+++SL + E+F +R P + + ++ + ++ + E L Sbjct: 127 SYVLSSLVTKSKQDEVFEFWRNEPILRKRNDFVTN--------GYKAFAENPNVENLLKS 178 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 V+ V+ EG++FY+GFA +L R KMV + YI RDE +H++ + ++ E Sbjct: 179 IVYDVILEGLFFYSGFAFFYNLARNQKMVATSTMINYINRDEHIHVDLFAKIFKEVLSEY 238 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 P T E + + +A LEI +A+ + G++ Y++F AN R HQ+G Sbjct: 239 PEYNTPELAEFVQATFTKAAELEIEWANYIIGNDIDGIDMHDLSAYIKFYANVRAHQLGF 298 Query: 310 EPLF-KYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQ 345 E F Y NP W+ ++ + +FFE + +Y + Sbjct: 299 ERPFAGYRTNPLRWIKAYEEVDLGKSDFFEQKSRQYTK 336 >gi|303258316|ref|ZP_07344319.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales bacterium 1_1_47] gi|302858762|gb|EFL81850.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales bacterium 1_1_47] Length = 328 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 147/321 (45%), Gaps = 21/321 (6%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 N P Y WA++ ++++ HW+ TEVPM +D+ WK N LTD ER + + FF Sbjct: 10 RNYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWK--NVLTDGERDFLTKVFRFFT 67 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 + V++ V PE R L A EAVH + ++I ++G+ E Sbjct: 68 QGDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPETV------ 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ-DLFVFYVVFEGMWFYTGFAQIL 209 N LQY F G + QE + + F EGM ++ F +L Sbjct: 122 --------YNEFLQYEAMAEKHDFFHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLL 173 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + R M G+ + + + DE+LH I + + IENP LWT +++ + + Sbjct: 174 NFTRNGTMKGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMI 233 Query: 270 LLEIAYAHETMPKGFV---GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 LE A+ + L+ + Y+++I +RR +G++ +FK NP PW+ + Sbjct: 234 ELEDAFIDLAFGVNDMSKQNLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDSM 293 Query: 327 IDLKKEKNFFETRVTEYQQGA 347 + + NFFE RV +Y +GA Sbjct: 294 LGVT-HTNFFENRVVDYAKGA 313 >gi|167627842|ref|YP_001678342.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597843|gb|ABZ87841.1| Ribonucleoside-diphosphate reductase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 410 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 80/320 (25%), Positives = 141/320 (44%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 101 KPFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 +T K ++ + + L V EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMDA-------------NPNTRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + ++ +RDES+H+ + ENP++ +F+++ M +A LE Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELEDK 325 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A ++Y++ I +RR +Q+GL ++ +NP W+ +++ Sbjct: 326 FIDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIYNIDKNPLTWLEWILNGADHT 385 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY+ WD Sbjct: 386 NFFENRVTEYEVAGLTGNWD 405 >gi|170077010|ref|YP_001733648.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus sp. PCC 7002] gi|169884679|gb|ACA98392.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus sp. PCC 7002] Length = 352 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 149/356 (41%), Gaps = 28/356 (7%) Query: 8 SPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +PI + ++ + + +++ QL ++Y WA Y N W+P ++ + D+ Sbjct: 12 NPIFNPDGNDDIAHRSIWFGETTNLMQLNDVRYPWAVGLYQQMRENFWIPQKLDITQDVT 71 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + LTD ER L + +S+ N+ I ++ PE + Q +E + Sbjct: 72 DYHN---LTDSERRAFDGILSYLTFLDSVQTCNL-PHIKSSITAPEISLCIAEQISQEGM 127 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++QY+I ++ +++ +R + + + Q + E Sbjct: 128 HNQSYQYMIETIIPSDRRSAVYDFWRTDKVLRDRCEYIASNYQRYID--------NPTPE 179 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 V + EG++FY GF +L M G A+ ++ I RDE H+ +I + Sbjct: 180 NYFTTLVADYLLEGLYFYNGFVFFYNLASRMLMPGSADIFKMINRDELSHVRLFQKLIPE 239 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 H M+ A E + + + +G+ S E Y +++AN R Sbjct: 240 AMATFDHSVDH-----IYEMVERAVQYECQWTNHIVGNDILGITEQSTEIYTKYLANIRL 294 Query: 305 HQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 IGLEPL+K Y ++P+ + D KK + NFFE VT Y + + WD Sbjct: 295 QAIGLEPLYKGDQYKKSPYRHLERFSDTKKEGNTKANFFEAGVTSYVMSSGITGWD 350 >gi|241668401|ref|ZP_04755979.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876934|ref|ZP_05249644.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842955|gb|EET21369.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 410 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 80/320 (25%), Positives = 141/320 (44%), Gaps = 17/320 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S+ Sbjct: 101 KPFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQSDV 159 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N N E R L A E +H + + +LGL + E ++ + E + Sbjct: 160 AVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 +T K ++ + + L V EG+ + FA +L+ R Sbjct: 219 MTDKIDFMMDA-------------NPNTRRGLGLCLAKTVFNEGVALFASFAMLLNFQRF 265 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 KM G+ + ++ +RDES+H+ + ENP++ +F+++ M +A LE Sbjct: 266 GKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELEDK 325 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 + G + L A ++Y++ I +RR +Q+GL ++ +NP W+ +++ Sbjct: 326 FIDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIYNIDKNPLTWLEWILNGADHT 385 Query: 334 NFFETRVTEYQQGA-ELKWD 352 NFFE RVTEY+ WD Sbjct: 386 NFFENRVTEYEVAGLTGNWD 405 >gi|68304258|ref|YP_249726.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus] gi|67973087|gb|AAY84053.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus] Length = 318 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 87/323 (26%), Positives = 144/323 (44%), Gaps = 26/323 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 LLP+ W+ Y A + HW E+ M D W L D ER +K L FFA Sbjct: 6 RKTLLPIVNEDLWQSYKKAVDCHWKVEEIDMSKDFDDWNK--KLNDKERFFLKHVLAFFA 63 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147 +++ +V NI+ + + E + +Q F E VH+ + ++ D E N Sbjct: 64 AADVIVNTNIIEHMQSAVPELEASFFYAQQTFIECVHTEMYNILVVEYIKDPQECDRILN 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + S+ KA WA ++ + S + V + + EG++F FA Sbjct: 124 AIEHIDSVKQKAAWAQKWIENQS-------------ATFAERMVAFAIVEGVFFSGSFAA 170 Query: 208 ILSLG--RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 I + + + G+ + I RDE LH +F N+ E K + K +M Sbjct: 171 IYYIKDSKKGALPGLTYSNELISRDEGLHTDFACLYYNKYIPEK----NKLSKTKVLSMF 226 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 EA +E + +P +G+N+ S +Y++F+A+R ++G + F T NPF +M+ Sbjct: 227 VEAVDIEKDFFTNALPVAMLGMNSQSMCEYIEFVADRLLFELGYDKHFN-TANPFEFMNN 285 Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348 I L+ + NFFE RV EY++ Sbjct: 286 -ISLEGKTNFFEKRVGEYKRFGA 307 >gi|167462363|ref|ZP_02327452.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus larvae subsp. larvae BRL-230010] Length = 343 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 163/327 (49%), Gaps = 15/327 (4%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S+V ++ WA+ Y + N W+P EVPM D+ W + L D ER K+ Sbjct: 21 GQSSNVLNWDDCRFPWAYPMYRNMLRNFWIPDEVPMTADIKQWST--ELGDHERDTFKKV 78 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G A +S+ + + +L++ + +F+E VH+ ++ Y+++SL ++ Sbjct: 79 IGLLAFLDSVQTD-YSGKVADYLTDSSLSALMSVLSFQEVVHNQSYSYVLSSLVPKSEQD 137 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E+F ++ + + ++ Q D + + V+ V+ EG++FY+ Sbjct: 138 EIFEYWKTDEVLRERNDFLAAGYQRFVD--------DPTPQTFMESVVYDVILEGLFFYS 189 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA ++ R KM+G ++I RDE +H+ + ++ ENP L +E + R Sbjct: 190 GFAFFYNMARNGKMLGTNTMIRFINRDEEIHVRLFTQIFRELIAENPELDNEETHEFVRQ 249 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322 +A LEIA++ + F G+ + ++Y++F+AN+R +++G+E F+ + N W Sbjct: 250 TFRKAAELEIAWSEYIIGDRFDGVTSRDLDKYVRFMANKRVNELGIERPFEGHRRNNLRW 309 Query: 323 MSEV-IDLKKEKNFFETRVTEYQQGAE 348 + + + +FFE+RVT+Y + ++ Sbjct: 310 IKAYEENDAGKTDFFESRVTQYVKVSD 336 >gi|16332312|ref|NP_443040.1| hypothetical protein slr0591 [Synechocystis sp. PCC 6803] gi|1653942|dbj|BAA18852.1| slr0591 [Synechocystis sp. PCC 6803] Length = 355 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 81/357 (22%), Positives = 153/357 (42%), Gaps = 28/357 (7%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 ++PI +V+++ + + ++ QL ++Y WA Y N W+P + + D+ Sbjct: 14 VTPIFNPTGNDSVENRTIWFGNTTNLMQLNDVRYNWAVGLYQQMRENFWIPQRLDITQDV 73 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + LT++ER L + +S+ NI + ++ PE + Q +E Sbjct: 74 TDY---WNLTNEERYAFDGILSYLTFLDSVQTCNI-PHLKSSVTAPEISLCMAEQISQEG 129 Query: 126 VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 +H+ ++QY+I ++ E +++ +R + + + Q Q Sbjct: 130 MHNQSYQYMIETIIPTEKRDKVYEFWRTDRVLKERCEYIAMLYQKYVDH--------PTQ 181 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E + + EG++FY GF +L M G A+ ++ I RDE H+ +I Sbjct: 182 ENYFIALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLI- 240 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 E ++T + M +A E + + + +G+ S EQY +++AN R Sbjct: 241 ---PEAMQVFTH-STDQIYEMFDKAVEFECRWTNHIVGNNILGITESSTEQYTKYLANSR 296 Query: 304 CHQIGLEPLFKYT---ENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 IGL+PL+ ++P+ + D KK + NFFE VT Y + + WD Sbjct: 297 LRAIGLDPLYTDARYGKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGVSGWD 353 >gi|159030376|emb|CAO91271.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 355 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 86/357 (24%), Positives = 154/357 (43%), Gaps = 28/357 (7%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 +SPI ++++ + + ++ QL ++Y W+ Y N W+P + + D+ Sbjct: 14 ISPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWSVGLYQQMRENFWIPQRLDITQDV 73 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + LTD+ER L + +S+ NI + ++ PE + Q +EA Sbjct: 74 TEY---GHLTDEERYAYDGILSYLTFLDSVQTCNI-PHLKGSVTAPEISLCMAEQISQEA 129 Query: 126 VHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 +H+ ++QY+I ++ GE+++ +R + + + Q T Sbjct: 130 MHNQSYQYLIETIIPSDRRGEVYDFWRTDKVLKDRCEFIASLYQQYIDKQTT-------- 181 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E + + E ++FY GF +L M G A+ ++ I RDE H+ +I Sbjct: 182 ESYFIALLADYLLESLYFYNGFIFFYNLASRQLMSGSADVFKMINRDELSHVRLYQKLIP 241 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 + PH ++ M A E + + + +G+ S EQY +++AN R Sbjct: 242 EAMAIFPHSV-----EQIYEMFDSAVKHECCWTNHIVGNDILGITEYSTEQYTKYLANIR 296 Query: 304 CHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 IGLEPL+ KY ++P+ + D KK + NFFE VT Y + L WD Sbjct: 297 LKAIGLEPLYREEKYNKSPYNHLERFSDTKKEGHTKANFFEATVTSYVMSSGLTGWD 353 >gi|193206379|ref|NP_500944.2| hypothetical protein F58F9.1 [Caenorhabditis elegans] Length = 581 Score = 242 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 72/318 (22%), Positives = 133/318 (41%), Gaps = 46/318 (14%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L ++ + P+ + WE Y A W EV + D++ W+ LT DER Sbjct: 307 EPLLAPNNNRFVVHPIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWE---ILTSDERQF 363 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + D Sbjct: 364 ISSILAFFAASDGIVTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRD 423 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E FN I AKA+W L++ ++P + EG Sbjct: 424 DAERNILFNAITTFKFIKAKADWCLRWISDHNAP-------------FSERLAAVAAVEG 470 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F + FA I L + + G+ + I R K + Sbjct: 471 IFFSSSFAAIFWLKKRGLLPGLTHSNELISR-------------------------KPAE 505 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + +++E+ L+E + E++P +G+N +Y++F+A+ ++G + T+N Sbjct: 506 SRITEIINESVLVEQDFVRESLPTNLIGMNQHMMCKYVEFVADLLLEELGYSKRYN-TKN 564 Query: 319 PFPWMSEVIDLKKEKNFF 336 F +M E I ++ + NFF Sbjct: 565 LFDFM-ENISIEGKTNFF 581 >gi|83592781|ref|YP_426533.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum rubrum ATCC 11170] gi|83575695|gb|ABC22246.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC 11170] Length = 358 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 85/328 (25%), Positives = 150/328 (45%), Gaps = 28/328 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y WA+E + HWM EVP+ +DL W S + ++D ER ++ + FF S+ V+ Sbjct: 30 RYPWAYEFWKKQQQVHWMGEEVPLGEDLKDWAS-DRVSDQERNLLTQIFRFFTQSDVEVS 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +N + E + + E +H + ++T+LG+ E F+ +R+ ++ Sbjct: 89 DNYLKRYMPIFQPLEIQMMMAAFTNMETIHIDAYALLLTTLGMPRTE-FSAFRDYAAMRD 147 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA++ +F GT + L +F EGM + FA +L+ R NKM Sbjct: 148 KADYM---------HTFGVGTMADVS---RTLAMFGAFTEGMALFASFAMLLNFPRHNKM 195 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + + +RDESLH I + ++ E L TK + + LE + Sbjct: 196 KGMGQIVTWSVRDESLHCQGIIRLFHEWNRETGAL-TKPVRDDILDVATTMVGLEEKFVD 254 Query: 278 ETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKY-----------TENPFPWMSE 325 G + + A + Y++++A+ R Q+ L L+ + +P PW+ E Sbjct: 255 LAFELGAIEGMRAEDIKSYVRYVADWRLTQLKLPILYGHFRETEAGYEQLRPHPLPWLVE 314 Query: 326 VIDLKKEKNFFETRVTEYQQGA-ELKWD 352 +++ + NFFE R TEY + A + WD Sbjct: 315 ILNGVEHANFFEQRSTEYSKAATQGAWD 342 >gi|323143005|ref|ZP_08077711.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas hippei YIT 12066] gi|322417199|gb|EFY07827.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas hippei YIT 12066] Length = 331 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 87/339 (25%), Positives = 156/339 (46%), Gaps = 19/339 (5%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 K N+ +KR L +S + P Y WA+E ++ + HW+ TEVPM +D+ WK L Sbjct: 2 KVKNMTEKRNLLTQS-RDYYKPFVYPWAYEAFMQSEQMHWLWTEVPMVEDVKDWK--MRL 58 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 D+ER + + FF + V++ V PE R L A EAVH + ++ Sbjct: 59 NDNERDFLTKVFRFFTQGDIDVSSAYVHTYLPAFPQPEIRMMLSSFAAREAVHIAAYSHL 118 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 I ++G+ ++N + + ++ AK + F + ++ + F Sbjct: 119 IETIGM-PDAIYNEFLQYEAMAAKHEF------------FHGLRLNQNENIAAKMAAFSA 165 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 EGM ++ F +L+ R M G+ + + + DE+LH I + + +NP LW Sbjct: 166 FTEGMQLFSSFVMLLNFTRNGTMRGMGQIIAWSINDETLHTESMIKLFREYIEQNPQLWN 225 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + + ++ + LE ++ L ++Y++FIA+RR +G++ +F Sbjct: 226 DDLKSTIYSIAEKMVELEDSFIDLAFGVNQMQKLAKEDVKKYIRFIADRRLSAMGMKAIF 285 Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKW 351 +NP PW+ ++ + NFFE RV +Y +GA W Sbjct: 286 NEKKNPLPWVDAMLGVT-HTNFFENRVVDYAKGALSGDW 323 >gi|154508355|ref|ZP_02043997.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC 17982] gi|153797989|gb|EDN80409.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC 17982] Length = 425 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 122/330 (36%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +DL WK+ LT DE+LM R Sbjct: 116 NWNKIQDDKDLEVWDRLTGNFWLPEKIPLSNDLPSWKT---LTKDEQLMTNRVFTGLTLL 172 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 ++L +++ P AF E+VH+ ++ I ++L E E F Sbjct: 173 DTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFRWSN 232 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E ++ KA Y D + V + E FY+GF + Sbjct: 233 ENEALQKKAEIVKSYY---------------DGNDPEKRKVASTMLESFLFYSGFYAPMY 277 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + E+ + + + ++L+E Sbjct: 278 WSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVNESSQERQDDLRDYTYSLLYELYE 337 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E Y + + ++++++ AN+ +G E LF NP + Sbjct: 338 NEEQYTEDLYDPLGL---TEDVKKFLRYNANKALMNLGYEALFPADATDVNPAILAALSP 394 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 395 NADENHDFFSGSGSSYVMGEVVDTEDEDWD 424 >gi|260220050|emb|CBA27200.1| Ribonucleoside-diphosphate reductase subunit alpha [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1306 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 112/184 (60%), Positives = 141/184 (76%) Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 + P+F TGT ++DQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+ Sbjct: 1123 IMDPNFHTGTSESDQVLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYIL 1182 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 RDES+H NFGID+INQ+K+ENPHLWT EF+ + + + +A LE YA +TMP+G +G+N Sbjct: 1183 RDESMHCNFGIDLINQLKLENPHLWTPEFKAEIKALFEKAVELEYRYAEDTMPRGVLGMN 1242 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 A + Y+++IANRR QIGLEPLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G Sbjct: 1243 ASMFKGYLRYIANRRATQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGA 1302 Query: 349 LKWD 352 L WD Sbjct: 1303 LSWD 1306 >gi|50288235|ref|XP_446546.1| hypothetical protein [Candida glabrata CBS 138] gi|49525854|emb|CAG59473.1| unnamed protein product [Candida glabrata] Length = 335 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 74/333 (22%), Positives = 139/333 (41%), Gaps = 28/333 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L + P+KY W Y W ++ + D+ W++ L+ ++ Sbjct: 7 DEVLLMENKRRFVMFPIKYHEIWAAYKKVEAAFWTAEDMELAKDVKDWET---LSAGQKE 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 L + ++++V NIV L NPE + + Q E ++ + ++ +L Sbjct: 64 FFGNYLAICSRTDNIVNKNIVEKFSAELQNPEGKSFYGFQIMMENIYDEIYSMLVDALFT 123 Query: 141 --DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 D LF + + AK+ WA ++ D+ + V EG Sbjct: 124 SVDNIPLFKAVCQQEEVKAKSEWAHRWVFD-------------DESLYAERLVASAAREG 170 Query: 199 MWFYTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 ++ FA + L M G+A +I RD + +F + HL TK Sbjct: 171 IFMSGAFAALYWLTKEKGIMPGVAMATNHICRDRGFYADFACLLF-------AHLKTKPN 223 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + ++ EA +E A+ +MP +G++ +QY++ +A++ G E + T Sbjct: 224 PKIIEQIITEAVEIEKAHYRNSMPIEKLGMDLKEIDQYIESVADKLLVSFGNEKFYNAT- 282 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NPFP+M E + + NFFE +V++YQ+ + Sbjct: 283 NPFPFMEEATSI-GKTNFFEKKVSDYQKASATS 314 >gi|288549884|ref|ZP_06390831.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter cancerogenus ATCC 35316] gi|288317051|gb|EFC55989.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter cancerogenus ATCC 35316] Length = 420 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 81/378 (21%), Positives = 153/378 (40%), Gaps = 32/378 (8%) Query: 4 NTGLSPI----QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 +TGL+ + + K + + +V + KY + + W P EV Sbjct: 39 STGLTAMAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEV 98 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D ++ L + E+ + NL + +S+ + +A+ +S PE ++ Sbjct: 99 DVSRDRIDFQ---ALPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVET 155 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----F 174 AF E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 156 WAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMTSYWHLL 215 Query: 175 TTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 GT + + ++ L + E + FY FA + M G A+ Sbjct: 216 GEGTHNVNGRTVTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKI 275 Query: 224 YQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHET 279 + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E +A Sbjct: 276 IRLIARDEALHLTGTQHMLNLLRSGTDDPEMAAIAEECKQECYDLFVQAAQQEKEWADYL 335 Query: 280 MPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FE 337 G +GLN QY+++I N R +GL+ F+ NP PW++ + + E Sbjct: 336 FRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQE 395 Query: 338 TRVTEY---QQGAELKWD 352 V+ Y Q +E+ D Sbjct: 396 VEVSSYLVGQIDSEVNTD 413 >gi|295098106|emb|CBK87196.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 420 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 81/378 (21%), Positives = 153/378 (40%), Gaps = 32/378 (8%) Query: 4 NTGLSPI----QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 +TGL+ + + K + + +V + KY + + W P EV Sbjct: 39 STGLTAMAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEV 98 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D ++ L + E+ + NL + +S+ + +A+ +S PE ++ Sbjct: 99 DVSRDRIDFQ---ALPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVET 155 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----F 174 AF E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 156 WAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMTSYWHLL 215 Query: 175 TTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 GT + + ++ L + E + FY FA + M G A+ Sbjct: 216 GEGTHNVNGKTVTVNLRTLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKI 275 Query: 224 YQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHET 279 + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E +A Sbjct: 276 IRLIARDEALHLTGTQHMLNLLRSGADDPEMAAIAEECKQECYDLFVQAAQQEKEWADYL 335 Query: 280 MPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FE 337 G +GLN QY+++I N R +GL+ F+ NP PW++ + + E Sbjct: 336 FRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQE 395 Query: 338 TRVTEY---QQGAELKWD 352 V+ Y Q +E+ D Sbjct: 396 VEVSSYLVGQIDSEVNTD 413 >gi|110806205|ref|YP_689725.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 5 str. 8401] gi|110615753|gb|ABF04420.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella flexneri 5 str. 8401] gi|281601680|gb|ADA74664.1| putative ribonucleotide reductase, beta subunit [Shigella flexneri 2002017] Length = 453 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 83 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 141 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 142 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 199 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 200 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 259 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 260 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 319 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 320 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 379 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 380 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 439 Query: 346 GAELKWD 352 AE+ D Sbjct: 440 DAEVDTD 446 >gi|331642864|ref|ZP_08343999.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H736] gi|331039662|gb|EGI11882.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H736] Length = 449 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 79 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 137 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 138 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 195 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 196 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 255 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 256 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 315 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 316 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 375 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 376 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 435 Query: 346 GAELKWD 352 +E+ D Sbjct: 436 DSEVDTD 442 >gi|331653669|ref|ZP_08354670.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M718] gi|331048518|gb|EGI20594.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M718] Length = 449 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 79 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 137 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 138 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 195 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 196 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 255 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 256 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 315 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 316 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 375 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 376 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 435 Query: 346 GAELKWD 352 AE+ D Sbjct: 436 DAEVDTD 442 >gi|319655055|ref|ZP_08009124.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. 2_A_57_CT2] gi|317393250|gb|EFV74019.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. 2_A_57_CT2] Length = 345 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 151/321 (47%), Gaps = 16/321 (4%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S++ +++ WA+ KY N W P E+ M D+ + L E+ + +G Sbjct: 27 SNILNWDDVRFSWAYPKYKKMLANFWTPFEINMSQDIKQF---PELRKSEQEAFLKIIGL 83 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146 A +S+ + + ++++ ++ A +E +H+H++ Y+++SL + E+F Sbjct: 84 LALLDSIQTD-YAGKVADYITDSSISALMIILAQQEVIHNHSYSYVLSSLVPKQKQDEVF 142 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 +R P + + + + + ++ E L VF VV EG++FY+GFA Sbjct: 143 EFWRTEPILAERNEFVVN--------GYKDFAENPSAENLLKSIVFDVVLEGLFFYSGFA 194 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 L R KMV + YI RDE +H++ + + +I ENP L T E + + Sbjct: 195 FFYHLARNQKMVATSTMINYINRDEQIHVDLFVKIFKEILQENPELNTNELSKFVQETFK 254 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSE 325 A LEI +A + + G+ E Y++F AN RC+Q+G E F+ Y NP W+ Sbjct: 255 RAAELEIEWARDVIGSKTEGILLSDVEAYIKFYANIRCNQLGYERPFEGYRTNPLRWIVA 314 Query: 326 VIDLK-KEKNFFETRVTEYQQ 345 + + +FFE + +Y + Sbjct: 315 YEQVDHGKSDFFEQKSRQYTK 335 >gi|74229799|ref|YP_309003.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV] gi|72259713|gb|AAZ67484.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV] Length = 318 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 87/323 (26%), Positives = 144/323 (44%), Gaps = 26/323 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P+ W+ Y A + HW E+ M D W N L D ER +K L FFA Sbjct: 6 RKTLFPIVNEDLWQSYKKALDCHWKVEEIDMSKDFDDWN--NKLNDKERFFLKHVLAFFA 63 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147 +++ +V NI+ + + E + +Q E VH+ + ++ D E N Sbjct: 64 AADVIVNTNIIEHMQSAVPEMEASFFYAQQTSIECVHTEMYNILVVEYIKDPQECDRILN 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + S+ KA WA ++ ++ + + V + + EG++F FA Sbjct: 124 AIEHIDSVKRKATWAQKWIESQT-------------ATFAERMVAFAIVEGVFFSGSFAA 170 Query: 208 ILSLG--RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 I + + + G+ + I RDE LH +F N+ + K + K M Sbjct: 171 IYYIKDTKKGALPGLTYSNELISRDEGLHTDFACLYYNKYIAKE----DKLSESKVLNMF 226 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 EA +E + +P +G+NA S +Y++F+A+R ++G E FK T NPF +M+ Sbjct: 227 KEAVDIEKDFFTNALPVAMLGMNAHSMCEYIEFVADRLLIELGYEKYFK-TLNPFEFMNN 285 Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348 I L+ + NFFE RV EY++ Sbjct: 286 -ISLEGKTNFFEKRVGEYKRFGA 307 >gi|229542075|ref|ZP_04431135.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1] gi|229326495|gb|EEN92170.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1] Length = 347 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 84/355 (23%), Positives = 150/355 (42%), Gaps = 18/355 (5%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M+N N S + L Y ++ Y N+W EV Sbjct: 1 MSNALLEKAKTLDPVHPNKATALFGGKSSGILNWNDLAYPHWYKTYKRLLGNYWQSDEVN 60 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D+ + L++ E+ + + A+ +S I+LA + ++P + L Sbjct: 61 MSTDVKQF---PLLSEKEQETFLKIISLLATLDSSQTRTILLA-SLYATDPSIQSILAVI 116 Query: 121 AFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 A +EAVH+ ++ YI++S+ + E F + R+ P + + ++ + Sbjct: 117 AQQEAVHNESYSYILSSVVSLDKQNEAFEIGRKDPVLLKRNKKLMEQYNAFAQ------- 169 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 D E + V+ + EG++FY+GFA +L R NKMVG + YI RDE H F Sbjct: 170 -QPDVEDIVKTLVYSTLLEGLFFYSGFAFFYNLARQNKMVGTSTMISYINRDELEHGRFI 228 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 ++I + E+P L T F E+ LE ++ + G++ ++++ Sbjct: 229 SELIRAVLSEHPELNTPAFSDWVYARFRESVDLETEWSEYVLQD-VEGIDLEEMAGFIKY 287 Query: 299 IANRRCHQIGLEPLFK-YTENPFPWMSEVIDL--KKEKNFFETRVTEYQQGAELK 350 AN+ IGL L+ + ENP W+ D + +FFE + Y + ++L Sbjct: 288 RANKMLRMIGLSELYPEHVENPMKWIRAYADNFDATKTDFFEQKSRSYTKVSDLN 342 >gi|332971065|gb|EGK10035.1| ribonucleotide-diphosphate reductase beta subunit [Desmospora sp. 8437] Length = 342 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 81/330 (24%), Positives = 157/330 (47%), Gaps = 17/330 (5%) Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 ++N RS +V ++ WA+ Y + N W P E+ M +D+ W L ++E++ Sbjct: 18 IINGRSSNVLNWDDCRFPWAYPLYKNMLANFWTPFEINMSEDIKQW---GRLAEEEQVAF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140 K+ +G A +S+ + + +L++ + +F+E VH+ ++ Y+++SL Sbjct: 75 KKIIGLLAFLDSIQTD-YSSKVADYLTDSSLAALMTVLSFQEVVHNQSYSYVLSSLVTRR 133 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 ++ E+F ++ + + + ++ Q + + V+ V+ EG+ Sbjct: 134 EQEEVFEYWKHDQVLRERNEFIVEGYQA--------FVEKPEPLTFLRSIVYDVILEGLN 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 FY+GFA +L R KMV + YI RDE LH+ + + ++ E P L T+E + Sbjct: 186 FYSGFAFFYNLARHQKMVSTSTMINYINRDEQLHVRLFVQIYRELLEEIPELNTEENRNF 245 Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319 A LEI + + F G+ Y++F+AN+R H++G E F Y +NP Sbjct: 246 VTESFRRAAELEIRWGETVLGDRFDGIRPDELRAYIRFMANKRAHELGAERPFAGYRKNP 305 Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAE 348 W+ D+ +++FFE + +Y + + Sbjct: 306 MRWVIAYQDVNRGKQDFFEGKSRQYSKVSS 335 >gi|290508492|ref|ZP_06547863.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp. 1_1_55] gi|289777886|gb|EFD85883.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp. 1_1_55] Length = 405 Score = 239 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 152/376 (40%), Gaps = 41/376 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N+ L P+ G+ VNV AR D KY + + W P EV + Sbjct: 39 KNDQLLEPMFFGQP-VNV-------ARYDQQ-----KYDIFEKLIEKQLSFFWRPEEVDV 85 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++ L + E+ + NL + +S+ + +A+ +S PE ++ A Sbjct: 86 SRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 142 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y +L + Sbjct: 143 FSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMTSYWHLLGE 202 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 203 GTHTVNGKTVTVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIR 262 Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ ++P + +E +Q+ + A E +A Sbjct: 263 LIARDEALHLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFR 322 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339 G +GLN QY+++I N R +GL+ F+ NP PW++ + + E Sbjct: 323 DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVE 382 Query: 340 VTEY---QQGAELKWD 352 V+ Y Q +E+ D Sbjct: 383 VSSYLVGQIDSEVDAD 398 >gi|15613065|ref|NP_241368.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus halodurans C-125] gi|14195134|sp|Q9KFH7|RIR2_BACHD RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|10173115|dbj|BAB04221.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus halodurans C-125] Length = 345 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 80/335 (23%), Positives = 155/335 (46%), Gaps = 16/335 (4%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + S+V +++ WA+ Y + N W P E+ M D + + LT+ Sbjct: 16 NASTGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPT---LTET 72 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ K+ +G A +S+ + + +L++ + +F+E VH+ ++ Y+++S Sbjct: 73 EQEAFKKIIGLLAFLDSVQTD-YSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSS 131 Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 L + E+F ++ + + + + + + + + V+ V+ Sbjct: 132 LVPKATQDEIFEYWKHDDVLKERNEFIIDGYEKFVD--------NPTPKTFLESIVYDVI 183 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG+ FY+GFA +L R KMV + YI RDE LH+ ++ ++ +E P L T+ Sbjct: 184 LEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTE 243 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 E + +T L +A LE + + G+N E Y+ FIAN+R Q+G+E + Sbjct: 244 ETKTFVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGMEKPYPE 303 Query: 316 TE-NPFPWMSEVIDLK-KEKNFFETRVTEYQQGAE 348 + NP W+ D+ + +FFE + +Y + + Sbjct: 304 IKHNPMKWIRAYEDVNSGKSDFFEQKSRQYAKVSA 338 >gi|125554800|gb|EAZ00406.1| hypothetical protein OsI_22421 [Oryza sativa Indica Group] Length = 244 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 62/249 (24%), Positives = 112/249 (44%), Gaps = 26/249 (10%) Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANW 161 + E R + Q E +HS + ++ + D E F VP++ KA+W Sbjct: 1 MSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGAEKDRLFRAIDTVPAVRRKADW 60 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 A+++ E + V + EG++F F I L + M G+ Sbjct: 61 AMRWIDG--------------GERFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLT 106 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + I RDE LH +F + + ++ K + + R ++ +A +E + + +P Sbjct: 107 FSNELISRDEGLHCDFACLLYDLLRG-------KLDEARVREIVADAVDIEREFVCDALP 159 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 VG+N QY++F+A+R +G + ++ NPF WM E+I L+ + NFFE RV Sbjct: 160 VALVGMNGDLMSQYIEFVADRLLMALGCKKMYNVA-NPFDWM-ELISLQGKTNFFEKRVG 217 Query: 342 EYQQGAELK 350 +YQ+ + + Sbjct: 218 DYQKASVMS 226 >gi|34482564|emb|CAE09564.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN [Wolinella succinogenes] Length = 283 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 81/293 (27%), Positives = 150/293 (51%), Gaps = 13/293 (4%) Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D + GLT E+L R L +SL NN++ + ++++PE L+RQ Sbjct: 1 MTPDKRDYN--GGLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQ 58 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEA+HS ++ ++ S+ + E++ M+R + +K + + L+ K+ Sbjct: 59 AFEEALHSQSYAVMVESISANTDEIYEMWRVDMQLKSKNDHIAGVYEELA--------KN 110 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 + + EG++FY GF+ +L R+ KM+G A+ ++I RDE HL + Sbjct: 111 PTDSAMLKAMFANQILEGIYFYAGFSFFYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQN 170 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +IN +K E P L+TK +++ M +A +E A+ +GL + +Y+Q++A Sbjct: 171 MINALKKERPDLFTKSLEEEVVEMFRKAVAVESAWGDYITQGQILGLTSEIIHEYIQYLA 230 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352 + R ++G+ L+ ++P W+ + + + NFFE VT Y +G+ + +D Sbjct: 231 DDRLKRVGMPILYN-AKHPIKWVDQFSSFNEQKTNFFEGNVTNYAKGS-INFD 281 >gi|89097912|ref|ZP_01170799.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. NRRL B-14911] gi|89087414|gb|EAR66528.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. NRRL B-14911] Length = 353 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 79/326 (24%), Positives = 154/326 (47%), Gaps = 16/326 (4%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S++ +++ WA+ KY N W P E+ M D+ + L+++E+ + +G Sbjct: 34 SNILNWDDVRFQWAFPKYKRMLANFWTPFEINMSQDIKQFPD---LSEEEKEAFLKIIGL 90 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELF 146 A +S+ + + +L++ ++ A +E +H+H++ Y+++S+ + E+F Sbjct: 91 LALLDSIQTD-YAGKVADYLTDSSLSALMIILAQQEVIHNHSYSYVLSSIVDKNKQDEVF 149 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 +R P++ + + + + + L +F VV EG++FY+GFA Sbjct: 150 EFWRTEPALIKRNEFVAS--------GYRNFAESPTVDSLLKSIIFDVVLEGLFFYSGFA 201 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 L R KMV + YI RDE LH++ + + +I E P TKE + + + Sbjct: 202 FFYHLARNQKMVATSTMINYINRDEQLHVDLFVKIFREILDEYPEQNTKELAEFAESTFR 261 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSE 325 EA LEI +A + G+ E+Y++F AN R +Q+G F+ + NP W+ Sbjct: 262 EAAYLEIEWARSIIGDKISGILIGDVEEYIRFYANVRSNQLGFNRPFEGSRTNPLRWIKA 321 Query: 326 VIDLK-KEKNFFETRVTEYQQGAELK 350 ++ + +FFE + +Y + + Sbjct: 322 YEEVDLGKSDFFEQKPRQYVKVNTVD 347 >gi|197285594|ref|YP_002151466.1| ribonucleotide-diphosphate reductase subunit beta [Proteus mirabilis HI4320] gi|194683081|emb|CAR43612.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus mirabilis HI4320] Length = 376 Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 80/340 (23%), Positives = 140/340 (41%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILK 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + + F GT ++ L + E + F Sbjct: 150 RARDISSYYDELINLTNLYHMFGEGTHQIKGKTVEVTLRKLKKQLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q+ + EA E +A +G +GLN QY+++I N R +GL+ FK Sbjct: 270 EQECYDLFVEAAEQEKEWAEYLFSEGSMIGLNKEILCQYVEYITNIRMQAVGLKLPFKAR 329 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PW++ + + E V+ Y Q +++ D Sbjct: 330 SNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSQVDTD 369 >gi|227356095|ref|ZP_03840485.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus mirabilis ATCC 29906] gi|227163740|gb|EEI48652.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus mirabilis ATCC 29906] Length = 376 Score = 238 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 80/340 (23%), Positives = 140/340 (41%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENKEILK 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + + F GT ++ L + E + F Sbjct: 150 RARDISSYYDELINLTNLYHMFGEGTHQIKGKTVEVTLRKLKKQLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q+ + EA E +A +G +GLN QY+++I N R +GL+ FK Sbjct: 270 EQECYDLFVEAAEQEKEWAEYLFSEGSMIGLNKEILCQYVEYITNIRMQAVGLKLPFKAR 329 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PW++ + + E V+ Y Q +++ D Sbjct: 330 SNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSQVDTD 369 >gi|269864629|ref|XP_002651641.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064151|gb|EED42415.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 277 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 80/289 (27%), Positives = 129/289 (44%), Gaps = 31/289 (10%) Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M D + + LT +E+ IK L FFA+S+ +V N+V + E + + Q Sbjct: 1 MTFDCEHFST---LTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQ 57 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E +HS + +I +L D+ E FN +PSI KA WA ++ Sbjct: 58 IAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWI----------- 106 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 A V + EG++F FA I L + M G+ + I RDE LH +F Sbjct: 107 ---ASDTSFDTRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDF 163 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + I + ++ EA +E + E++P +G+N QY++ Sbjct: 164 ACLLHKYINNKCT---------VIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIE 214 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 F+A+R +G + ++ + NPF +M E I L+ + NFFE R YQ+G Sbjct: 215 FVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 261 >gi|238895770|ref|YP_002920506.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|238548088|dbj|BAH64439.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 396 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 152/376 (40%), Gaps = 41/376 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N+ L P+ G+ VNV AR D KY + + W P EV + Sbjct: 30 KNDQLLEPMFFGQP-VNV-------ARYDQQ-----KYDIFEKLIEKQLSFFWRPEEVDV 76 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++ L + E+ + NL + +S+ + +A+ +S PE ++ A Sbjct: 77 SRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 133 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y +L + Sbjct: 134 FSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMTSYWHLLGE 193 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 194 GTHTVNGKTVTVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIR 253 Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ ++P + +E +Q+ + A E +A Sbjct: 254 LIARDEALHLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFR 313 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339 G +GLN QY+++I N R +GL+ F+ NP PW++ + + E Sbjct: 314 DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVE 373 Query: 340 VTEY---QQGAELKWD 352 V+ Y Q +E+ D Sbjct: 374 VSSYLVGQIDSEVDAD 389 >gi|226327851|ref|ZP_03803369.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198] gi|225203555|gb|EEG85909.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198] Length = 376 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 78/340 (22%), Positives = 140/340 (41%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILK 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + + + G ++ L + E + F Sbjct: 150 RARDISSYYDELINLTNLYHMYGEGEHQVKGKTVHVTLRKLKKQLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + +E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAEEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q+ + EA E +A +G +GLN QY+++I N R +GL+ FK Sbjct: 270 EQECYDLFVEAAEQEKEWAEYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFKAR 329 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PW++ + + E V+ Y Q +++ D Sbjct: 330 SNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSQVDTD 369 >gi|311278798|ref|YP_003941029.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1] gi|308747993|gb|ADO47745.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1] Length = 376 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 81/368 (22%), Positives = 147/368 (39%), Gaps = 30/368 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-----------------SPS 173 + +II ++ D +F+ I +A QY TL + Sbjct: 123 YTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISQYYDTLIELTSYWHLLGEGTHSVNGKT 182 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 T +D ++ L E + FY FA + M G A+ + I RDE+L Sbjct: 183 ITVNLRDLKKKLYLCLMSVNA-LEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEAL 241 Query: 234 HLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 HLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLN 301 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---Q 344 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 302 KDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQ 361 Query: 345 QGAELKWD 352 AE+ D Sbjct: 362 IDAEVDTD 369 >gi|118197598|ref|YP_874310.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV] gi|113472593|gb|ABI35800.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV] Length = 341 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 82/334 (24%), Positives = 144/334 (43%), Gaps = 21/334 (6%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 +LP++ W +A + W E + D W+ + L ER +K L FFA Sbjct: 8 RKVILPIENQNLWRMDKTAMDCMWKVEEDDLSRDFDDWR--HKLCVQERFFLKHILAFFA 65 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FN 147 S++++V N++ + + E R + +Q E VHS + ++ + E N Sbjct: 66 SADTIVNINLIDYVRAAVPELEARYFYDQQILIENVHSEMYSLLVFEYIKNSEERNKLLN 125 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTT----------GTKDADQEFLQDLFVFYVVFE 197 + + I KA WAL++T++ + + L + + + E Sbjct: 126 AFDRIDCIKKKAQWALKWTESKWWQDYWVDPVLGCVQRRFRNKSYPSKLARRMIAFAIVE 185 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++F FA I + M G+ + I RDE LH +F N + K Sbjct: 186 GIFFSGSFAAIFFIKTKGLMPGLTFSNELISRDEGLHTDFACMYYNNYIP----INEKLS 241 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 Q+ +M EA +E + +P +G+NA +Y++F+A+R ++ F T Sbjct: 242 PQQILSMFIEAVDIEKEFFTTALPCYLLGINATEMCKYIEFVADRLLVELRQPKHFN-TP 300 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 NPF +M+ I L+ + NFFE RV EY++ + Sbjct: 301 NPFNFMTN-ISLEGKTNFFERRVGEYKRFGAGQD 333 >gi|149392653|gb|ABR26129.1| ribonucleoside-diphosphate reductase small chain [Oryza sativa Indica Group] Length = 233 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 106/255 (41%), Gaps = 26/255 (10%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P++Y WE Y A + W EV + D W L+ DER + L FFA+S+ Sbjct: 1 MFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHW--DAALSPDERHFVSHVLAFFAASD 58 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYR 150 +V N+ + E R + Q E +HS + ++ + D+ E F Sbjct: 59 GIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDVEKDRLFRAID 118 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 VP++ KA+WA+++ E + V + EG++F F I Sbjct: 119 TVPAVRRKADWAMRWIDG--------------GERFAERLVAFACVEGIFFSGSFCAIFW 164 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L + M G+ + I RDE LH +F + + ++ K + + + ++ +A Sbjct: 165 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRG-------KLDESRVQEIVADAVD 217 Query: 271 LEIAYAHETMPKGFV 285 +E + + +P V Sbjct: 218 IEREFVCDALPVALV 232 >gi|149182583|ref|ZP_01861054.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. SG-1] gi|148849719|gb|EDL63898.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp. SG-1] Length = 345 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 158/335 (47%), Gaps = 16/335 (4%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + S++ +++ WA+ KY N W P E+ M D+ + LT+ Sbjct: 16 NASTAIINGKSSNILNWDDVRFSWAYPKYKRMLGNFWTPFEINMSKDIKQF---PNLTEQ 72 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ + +G A +S+ + + +L++ ++ A +E VH+H++ Y+++S Sbjct: 73 EQDTFLKVIGLLALLDSIQTD-YAGKVADYLTDSSLNALMIILAQQEVVHNHSYSYVLSS 131 Query: 138 LG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 + + E+F+ +R P++ + ++ Q + ++ + E L V+ V+ Sbjct: 132 IVSKNKQDEVFDYWRTEPTLRKRNDFITNGYQGFA--------ENPNIENLLHSIVYDVI 183 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY+GFA +L R KMV + YI RDE LH+ + ++ ENP T Sbjct: 184 LEGLFFYSGFAFFYNLARNQKMVATSTMINYINRDEQLHVGLFEKIYKEVLHENPEYDTA 243 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK- 314 E + A LEI + + + GL E Y++F+AN+R Q+G + F+ Sbjct: 244 ELKVFGTQAFKRAAELEIEWGEQIIGNKIDGLLMSDLEAYIKFMANKRAEQMGFQAPFEG 303 Query: 315 YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAE 348 Y NP W+ ++ + +FFE + +Y + ++ Sbjct: 304 YRTNPLRWIVAYQEVDLGKTDFFEQKSRQYTKTSD 338 >gi|288554979|ref|YP_003426914.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus pseudofirmus OF4] gi|288546139|gb|ADC50022.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus pseudofirmus OF4] Length = 344 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 80/335 (23%), Positives = 161/335 (48%), Gaps = 16/335 (4%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + S+V +++ WA+ Y + N W P E+ M D +++ LT+ Sbjct: 15 NASTGIINGESSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDTKQFQN---LTET 71 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ K+ +G A +S+ + L + +L++ + +F+E VH+ ++ Y+++S Sbjct: 72 EQEAFKKIIGLLAFLDSVQTD-YSLKVADYLTDSSLVALMSVLSFQEVVHNQSYSYVLSS 130 Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 L + E+F+ ++ P + + + + + ++ + + L V+ V+ Sbjct: 131 LVPKATQDEIFDYWKNDPVLKERNEFIVDGYEEFAN--------NPTPDTLARSIVYDVI 182 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG+ FY+GFA +L R KMV + YI RDE LH+ +V ++ E+P L + Sbjct: 183 LEGVNFYSGFAFFYNLARHQKMVSTSTMINYINRDEQLHVYLFTNVFKELLEEHPELNNR 242 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK- 314 E + + L A LE+ + + + + G+ + Y++FIAN+R Q+G + +F Sbjct: 243 EMESFVKQSLTTAVELELKWYNYIIGEQIEGVTSDEMGSYLKFIANKRAKQLGYDHIFPE 302 Query: 315 YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAE 348 + N F W+ D+ + +FFE + +Y + + Sbjct: 303 HRTNVFKWIKAYEDVNAAKSDFFEQKSRQYAKVSS 337 >gi|324020907|gb|EGB90126.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 117-3] Length = 420 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 50 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 108 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 109 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 166 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 167 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 226 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 227 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 286 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 287 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 346 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 347 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 406 Query: 346 GAELKWD 352 AE+ D Sbjct: 407 DAEVDTD 413 >gi|67921622|ref|ZP_00515140.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH 8501] gi|67856734|gb|EAM51975.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH 8501] Length = 321 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 81/328 (24%), Positives = 142/328 (43%), Gaps = 27/328 (8%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 ++Y WA Y N W+P + + D+ + LTDDER L + +S Sbjct: 9 NDVRYTWAVGLYQQMRENFWIPQRLDITQDVTDY---GNLTDDERYAYDGILSYLTFLDS 65 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREV 152 + NI + ++ PE + Q +E +H+ ++QY+I ++ E +++ +R Sbjct: 66 VQTCNI-PHLKTSITAPEISLCMAEQISQEGMHNQSYQYLIETIIPPERRTQVYEFWRTD 124 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 + + + + Q DA E + + EG++FY GF +L Sbjct: 125 KLLRDRCEFIAKLYQKYID--------DATTENYFIALMADFLLEGLYFYNGFIYFYNLA 176 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 M G A+ ++ I RDE H+ +I + + PH ++ M A E Sbjct: 177 SRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPHSV-----EQIYEMFDMAVNYE 231 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDL 329 + + + +G+ S E+Y +++AN R IGLEPL+ Y+++P+ + D Sbjct: 232 CRWTNHIVGNNILGITESSTEKYTKYLANIRLRSIGLEPLYPEPKYSKSPYTHLERFSDT 291 Query: 330 KK----EKNFFETRVTEYQQGAELK-WD 352 KK + NFFE VT Y + L WD Sbjct: 292 KKAAHTKANFFEATVTSYVMSSGLTGWD 319 >gi|37526941|ref|NP_930285.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786374|emb|CAE15427.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotide reductase 1) (B2 protein) (R2 protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 73/311 (23%), Positives = 129/311 (41%), Gaps = 24/311 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + F GT ++ L + E + F Sbjct: 150 RAKDISAYYDDLIEMTNHYQLFGEGTHQIAGKTITASLRGLKKQLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + KE Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAKEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q+ + +A E +A +G +GLN QY+++I N R +GL+ F+ Sbjct: 270 EQQCYDLFVQAAEQEKEWADYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFETR 329 Query: 317 ENPFPWMSEVI 327 NP PW++ + Sbjct: 330 SNPIPWINAWL 340 >gi|253687496|ref|YP_003016686.1| ribonucleotide reductase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754074|gb|ACT12150.1| ribonucleotide reductase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 376 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y +L + GT + Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMTGYYHLLGEGTHQVNGKS 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVDLHSLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E QQ+ + A E +A G +GLN Sbjct: 243 LTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEISDD 369 >gi|301156451|emb|CBW15922.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Haemophilus parainfluenzae T3T1] Length = 376 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQTKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + GT D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKE 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CVVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + ++P + +E +Q++ + A E +A G +GLN Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKEWADYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F NP PW++ + Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFGARSNPIPWINAWL 340 >gi|51830370|gb|AAU09736.1| YGR180C [Saccharomyces cerevisiae] Length = 345 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 75/342 (21%), Positives = 139/342 (40%), Gaps = 27/342 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + + + D+ +L S + P+KY W Y + W E+ + D ++ Sbjct: 14 ERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ- 72 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 LTDD++ I L SS++LV ++ L NPE + + Q E +HS Sbjct: 73 --KLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIHSEV 130 Query: 131 FQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 + ++ + D + F +P + KA + ++ D + Sbjct: 131 YSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWI-------------SNDDSLYAE 177 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++ +A + L M G+A + I RD + +F + Sbjct: 178 RLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF------ 231 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 HL TK + ++ EA +E Y ++P G++ S Y++F+A+ G Sbjct: 232 -AHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFG 290 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 E + NPF +M +V K FFE +V++YQ+ +++ Sbjct: 291 NEKYYNAV-NPFEFMEDVATAGKTT-FFEKKVSDYQKASDMS 330 >gi|294501621|ref|YP_003565321.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus megaterium QM B1551] gi|295706969|ref|YP_003600044.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus megaterium DSM 319] gi|294351558|gb|ADE71887.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus megaterium QM B1551] gi|294804628|gb|ADF41694.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus megaterium DSM 319] Length = 347 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 83/329 (25%), Positives = 159/329 (48%), Gaps = 18/329 (5%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S++ +++ WA+ KY N W P E+ M D+ + LT DE+ + Sbjct: 24 GKSSNILNWDDVRFSWAFPKYKRMLANFWTPFEINMGQDIKQF---PQLTADEQESFLKI 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EG 143 +G A +S+ ++ + ++++ ++ A +E VH+H++ Y+++SL + Sbjct: 81 IGLLALLDSIQSD-YASKVADYVTDSSINALMIILAQQEVVHNHSYSYVLSSLVPKGKQD 139 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E+F +R + A+ ++ + +++A E V+ V+ EG++FY+ Sbjct: 140 EVFEYWRTDEKLRARNDFITN--------GYKAFSEEATVENFLKSMVYDVILEGLFFYS 191 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA +L R KMV + YI RDE LH+ + ++ ENP T+E + Sbjct: 192 GFAFFYNLARNQKMVATSTMINYINRDEQLHVGLFEKIFKEVLNENPAYRTEELETFVVE 251 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYT--ENPF 320 EA LEI +A + + F G+ +QY++++AN+RC+Q+G F ENP Sbjct: 252 TFQEAARLEIEWAESVIGEKFDGITMKELQQYIEYMANKRCNQLGFGRAAFPEAPIENPL 311 Query: 321 PWMSEVIDLK-KEKNFFETRVTEYQQGAE 348 W+ ++ + +FFE + +Y + ++ Sbjct: 312 RWIIAYQEVDLGKTDFFEQKSRQYTKASD 340 >gi|23100542|ref|NP_694009.1| ribonucleotide-diphosphate reductase subunit beta [Oceanobacillus iheyensis HTE831] gi|22778775|dbj|BAC15043.1| ribonucleoside-diphosphate reductase beta subunit [Oceanobacillus iheyensis HTE831] Length = 347 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 149/348 (42%), Gaps = 18/348 (5%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 + N K S + + Y ++ Y N+W EV M D+ Sbjct: 8 KAKTLEPRNPNKSTKLFGGESSGILNWNDIAYPHWYKMYKRLVGNYWQADEVNMSSDVKQ 67 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + + L+ +E+ + +G ++ ++ L I + ++P + + A +EAVH Sbjct: 68 FST---LSKEEQDAYLKIIGLLSTLDAPQTRT-ALLISLYATDPSVQSIMAVIAQQEAVH 123 Query: 128 SHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 + ++ Y+++S+ ++ E F + R + + + + E Sbjct: 124 NESYSYVLSSVVSWNEQNEAFQLGRTDELLLKRNEQLTEQYNAFVD--------NPSMEN 175 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 + V+ + EGM+FY+GFA L R NKMVG + YI RDE H F ++ Sbjct: 176 MLKTLVYTSLLEGMFFYSGFAFFYHLARQNKMVGTSTMISYINRDELEHGRFITELFRAT 235 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305 ENP EF ++ LEI ++H + K G++ + Y+++ AN+ Sbjct: 236 LEENPSHNNAEFIDWIYDRFQQSVELEIEWSHYVLNK-LEGIDMDDMDGYIKYRANKMLR 294 Query: 306 QIGLEPLFK-YTENPFPWMSEVIDL--KKEKNFFETRVTEYQQGAELK 350 +GLE L+ + ENP W+ +D + +FFE + +Y + ++L Sbjct: 295 MMGLEELYPQHVENPMKWVRAYVDNFDGTKTDFFEQKSRQYTKTSDLN 342 >gi|332278613|ref|ZP_08391026.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] gi|332100965|gb|EGJ04311.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] Length = 420 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 50 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 108 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 109 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 166 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 167 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 226 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 227 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 286 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 287 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 346 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 347 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 406 Query: 346 GAELKWD 352 AE+ D Sbjct: 407 DAEVDTD 413 >gi|120403054|ref|YP_952883.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium vanbaalenii PYR-1] gi|119955872|gb|ABM12877.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium vanbaalenii PYR-1] Length = 324 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K WE N W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRLQDDKDAEVWE---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + + F Sbjct: 69 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA +QY + V + E FY+GF Sbjct: 129 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALESEATRQELKDYTYELLFE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323 >gi|300723737|ref|YP_003713044.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus nematophila ATCC 19061] gi|297630261|emb|CBJ90912.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus nematophila ATCC 19061] Length = 376 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 76/338 (22%), Positives = 135/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQVKNNQLQEPMFFGQSVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A +S PE ++ +F E +HS + Sbjct: 64 -NSLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTGTKD----- 180 + +II ++ D +F+ E I +A Y L G + Sbjct: 123 YTHIIRNIVNDPSIVFDDIVENEQILKRAKDISAYYDDLIEMTNYYHQLGEGVHNVAGKI 182 Query: 181 ------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 A ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + KE +QK + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGQDDPEMAEIAKECEQKCYDLFVDAAEQEKEWADYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 303 DILCQYIEYITNIRMQAVGLKLPFETRSNPIPWINAWL 340 >gi|167461830|ref|ZP_02326919.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383591|ref|ZP_08057349.1| ribonucleotide-diphosphate reductase subunit beta-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152059|gb|EFX44995.1| ribonucleotide-diphosphate reductase subunit beta-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 343 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 79/334 (23%), Positives = 152/334 (45%), Gaps = 14/334 (4%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N DK + + S + ++ ++ Y NHW+P+E+PM D ++ LT Sbjct: 14 NKSDKLIEGSCSSILNWDDIRKPEMYKLYKVLIANHWIPSEIPMNKDKLQFEQ---LTAQ 70 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ K+ +G A +S+ N V + + ++ +E +H+ ++ Y+++S Sbjct: 71 EQETYKKIIGLLAVLDSMQ-TNFVTDVGNYFTDSSLVAIAAIINQQEVIHNQSYSYVLSS 129 Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 + + + +EV K L+ + + + + V ++ E Sbjct: 130 ITN-----YEVQKEVFEYWKKDEILLER-NLFIAELYQRFRDEPTPATFFEAVVADMILE 183 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++FY+GFA L R KM+G ++ YI RDE+ H F +V + + P L T E Sbjct: 184 GIFFYSGFAFFYHLARQQKMLGTSQMISYIQRDEAQHAYFFGEVFKLLLTDFPELNTSER 243 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 Q + +A LE +AH + G++ +Y++FIAN+R +GL+P ++ + Sbjct: 244 IQYVYDTIDQAVKLEEKWAHYVL-NQIDGIDLDDFSRYIRFIANKRLKTMGLQPAYEGVD 302 Query: 318 NPFPWMSEVID---LKKEKNFFETRVTEYQQGAE 348 N PW+ D + + +FFE + Y + ++ Sbjct: 303 NCMPWIRPFSDEALNQTKTDFFEAKSRTYAKVSD 336 >gi|494379|pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide Reductase From Escherichia Coli. Spectroscopic And Crystallographic Characterization gi|494380|pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide Reductase From Escherichia Coli. Spectroscopic And Crystallographic Characterization gi|494553|pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli Ribonucleotide Reductase Protein R2 gi|494554|pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli Ribonucleotide Reductase Protein R2 Length = 375 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 138/340 (40%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + GT + ++ L + E + F Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 208 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + +E Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q+ + +A E +A G +GLN QY+++I N R +GL+ F Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTR 328 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PW++ + + E V+ Y Q +E+ D Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTD 368 >gi|227114436|ref|ZP_03828092.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 376 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y +L + GT + Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E QQ+ + A E +A G +GLN Sbjct: 243 LTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEISDD 369 >gi|227328222|ref|ZP_03832246.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 376 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y +L + GT + Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNDEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E QQ+ + A E +A G +GLN Sbjct: 243 LTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEISDD 369 >gi|261822457|ref|YP_003260563.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium wasabiae WPP163] gi|261606470|gb|ACX88956.1| ribonucleotide reductase [Pectobacterium wasabiae WPP163] Length = 376 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y +L + GT + Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E QQ+ + A E +A G +GLN Sbjct: 243 LTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEISDD 369 >gi|42543283|pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At Neutral Ph gi|42543284|pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At Neutral Ph gi|42543506|pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli gi|42543507|pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli Length = 375 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 64 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 122 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F NP PW++ + + E V+ Y Q Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361 Query: 346 GAELKWD 352 +E+ D Sbjct: 362 DSEVDTD 368 >gi|296128314|ref|YP_003635564.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM 20109] gi|296020129|gb|ADG73365.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM 20109] Length = 326 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W + LT+ E+ M R Sbjct: 17 NWNRLQDEKDLEVWD---RLVGNFWLPEKVPVSNDIQSWAT---LTEAEKTMTTRVFTGL 70 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + E F Sbjct: 71 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLISTKEIDEAFR 130 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA L Y + + V + E FY+GF Sbjct: 131 WSEENPNLQRKAEIVLDYYR---------------GDDPLKRKVASTMLESFLFYSGFYA 175 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E + + +L E Sbjct: 176 PMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLERVSEAERAELKDYTFNLLFE 235 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 236 LYDNEVEYTQDLYDELGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILAA 292 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 LSPNADENHDFFSGSGSSYVIGKAVNTEDDDWD 325 >gi|126658748|ref|ZP_01729893.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110] gi|126620010|gb|EAZ90734.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110] Length = 347 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 83/352 (23%), Positives = 154/352 (43%), Gaps = 24/352 (6%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 SPI + N +++ + + +V L +YGWA Y + + W+P + D Sbjct: 9 SPIFNPTGKDNKENRHLWGGDTTNVINLNETRYGWARSIYQTMRESFWVPQRTDLSQDKL 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + L ER +K L + +S+ NI + R+++ PE R L Q +EA+ Sbjct: 69 DYAN---LIPGERRALKGILSYLNFLDSVQVANIPE-LSRYITAPEARMCLAEQTSQEAM 124 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H T+QYI S+ + + E+++ +++ + + + Y Q L++ + E Sbjct: 125 HGETYQYITESIIPENEQHEVYDFWKQDLLLHERCEFIAGYYQNLAN--------NPTGE 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + EG+ FY GF +L + ++ G A+ + I DE H++ +I + Sbjct: 177 NYYMALIGDYLLEGLLFYQGFLFFYNLASSQRLAGCAKLIKQINMDELTHVSLYQKLITE 236 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + + + + + H EI + + +G++ S E Y +++AN R Sbjct: 237 ATTKFSY-----SEDEITELFHTTVEREIEWTNHIFDGQILGVSKASTEAYTKYLANLRL 291 Query: 305 HQIGLEPLFKYTENP---FPWMSEVIDLKKEKNFFETRVTEYQQGAELK-WD 352 IG+ ++ ENP W K + FFET VT Y Q +K WD Sbjct: 292 KAIGIPAIYPKIENPYAHLDWADFKGIGKSKAAFFETEVTGYAQPTAVKGWD 343 >gi|315445193|ref|YP_004078072.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. Spyr1] gi|315263496|gb|ADU00238.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. Spyr1] Length = 320 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 11 NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + + F Sbjct: 65 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTSEIDDAFR 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA +QY + V + E FY+GF Sbjct: 125 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALADDATRQELKDYTYELLFE 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 230 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 319 >gi|323487827|ref|ZP_08093085.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus donghaensis MPA1U2] gi|323398561|gb|EGA91349.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus donghaensis MPA1U2] Length = 348 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 85/342 (24%), Positives = 154/342 (45%), Gaps = 20/342 (5%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + N + S + + Y ++ Y + N W E+ MQDD+ W + L Sbjct: 16 EHPNKSTGVLNGQSSGLLNWNDIAYPQMYDLYQALLANFWKAQEINMQDDIKQW---DSL 72 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 + E+ + R AS +SL + A ++++ + + +EAVH+ ++ YI Sbjct: 73 SSVEKDVFLRINTQLASLDSLQTPTMSQA-MDYVTDSSFKAIFAVISQQEAVHTESYSYI 131 Query: 135 ITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 ++SL ++ E FN + P + + L ++ ++ + L L V Sbjct: 132 LSSLVSVSEQNERFNQAKSDPVVQKRNELIL--------DAYEEFRQNPTPQNLFKLSVN 183 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 + EG++FY GFA L R KM+ + YI RDE H F I + ENP L Sbjct: 184 SINLEGIYFYAGFAFFYHLARQQKMLKTSTMISYIQRDEMQHAYFIAQFIRIMLTENPEL 243 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 T E Q T + +A LE +A + GL+ +Y++++AN+R Q+GL+ L Sbjct: 244 HTDENIQYIYTTIDKAVQLEKEWAQYIL-ADIEGLDLVEFGEYVEYLANKRLRQLGLDNL 302 Query: 313 FKYTENPFPWM----SEVIDLKKEKNFFETRVTEYQQGAELK 350 ++ NP PW+ ++++ + +FFE + Y + ++ Sbjct: 303 YEERSNPMPWIQVFGDDMMN-DTKSDFFEQKSRTYTKVSQTN 343 >gi|117624429|ref|YP_853342.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli APEC O1] gi|237704711|ref|ZP_04535192.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 3_2_53FAA] gi|115513553|gb|ABJ01628.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli APEC O1] gi|226901077|gb|EEH87336.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 3_2_53FAA] gi|323952030|gb|EGB47904.1| ribonucleotide reductase [Escherichia coli H252] gi|323956004|gb|EGB51757.1| ribonucleotide reductase [Escherichia coli H263] Length = 420 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 50 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 108 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 109 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 166 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 167 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 226 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 227 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 286 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 287 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 346 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 347 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 406 Query: 346 GAELKWD 352 AE+ D Sbjct: 407 DAEVDTD 413 >gi|108798796|ref|YP_638993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. MCS] gi|119867913|ref|YP_937865.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. KMS] gi|126434397|ref|YP_001070088.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. JLS] gi|108769215|gb|ABG07937.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. MCS] gi|119694002|gb|ABL91075.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. KMS] gi|126234197|gb|ABN97597.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium sp. JLS] Length = 320 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 11 NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + + F Sbjct: 65 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA +QY + V + E FY+GF Sbjct: 125 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E + + +L E Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALQDPATQAELKDYTYELLFE 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + ++++++ AN+ +G E LF E NP + Sbjct: 230 LYDNEVEYTQDLYDSVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 319 >gi|219883069|ref|YP_002478233.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus A6] gi|219862075|gb|ACL42416.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus A6] Length = 326 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 64/337 (18%), Positives = 129/337 (38%), Gaps = 33/337 (9%) Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 R + ++ E + NN W+P ++P+ +D+ W + LT +E+L+ R Sbjct: 10 RVNAINWNRIQDDKDVEVWNRLVNNFWLPEKIPLSNDVQSWAT---LTPEEQLLTMRVFT 66 Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGEL 145 +++ +++ P L AF E+VH+ ++ I ++L + E Sbjct: 67 GLTLLDTIQGTVGAVSLIPDAITPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEA 126 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 F E + KA + Y Q + V + E FY+GF Sbjct: 127 FRWSEENVHLQKKAQIVMDYYQ---------------GDDPLKRKVASTLLESFLFYSGF 171 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 + K+ A+ + I++DE++H + + + +E Q + +L Sbjct: 172 YLPMYWSSRAKLTNTADLIRLIIKDEAVHGYYIGYKFQRGLEKETAERREELQAYAYELL 231 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPW 322 E E+ Y H+ + A ++++ + AN+ +GL+P+F NP Sbjct: 232 DELYENEVQYTHDLYDGVGL---AEDVKKFLHYNANKALMNLGLDPVFAQDATNVNPAIL 288 Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA-------ELKWD 352 + + + +FF + Y G+ + WD Sbjct: 289 SALSPNADENHDFFSGSGSSYIVGSSKAVSTLDGDWD 325 >gi|157325080|ref|YP_001468505.1| gp125 [Listeria phage A511] gi|66732769|gb|AAY53360.1| gp57 [Listeria phage P100] gi|66733088|gb|AAY52906.1| gp125 [Listeria phage A511] Length = 343 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 149/335 (44%), Gaps = 18/335 (5%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 N + S + ++Y + Y N+W+P EV M+ D + N L+ Sbjct: 12 NPNKSTAIINGEASGIVNWNDIRYPSFYRAYKELTTNYWLPDEVDMKSDAKQY---NHLS 68 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ++E+ +G A+ +S I I ++S+ A +EA+H+ ++ Y++ Sbjct: 69 EEEKYAFDSIIGLLATLDSPQTRFIY-NIAEYVSDASVHAITAIIAQQEAIHNESYSYVL 127 Query: 136 TSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 S+ ++ +F R P+I + ++ + + E + V Sbjct: 128 ASITNLQEQNRVFEEARTHPTIIKRNAPIMKSYDDFMN--------NKTPENMVKALVQS 179 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 + EG+ FY+GFA +L R NKM G + +I RDE H F ++I I ENP L Sbjct: 180 SILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISELIRAIVGENPELQ 239 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 T E A LE A++ E + +G G++ Y+++ AN+ +GL+P++ Sbjct: 240 TDELNDYVYASFRHAVELEQAWSSEVL-QGIEGIDVEEMLDYVKYRANKMLGMLGLQPMY 298 Query: 314 -KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 +TEN W+ D + + +FFE R + Y++ Sbjct: 299 QGHTENSMTWIKAYADNFTETKTDFFEMRNSSYKK 333 >gi|145224865|ref|YP_001135543.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium gilvum PYR-GCK] gi|145217351|gb|ABP46755.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Mycobacterium gilvum PYR-GCK] Length = 320 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 11 NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + + F Sbjct: 65 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTSEIDDAFR 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA +QY + V + E FY+GF Sbjct: 125 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALADDATRQELKDYTYELLFE 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 230 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVITEDEDWD 319 >gi|46908387|ref|YP_014776.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes serotype 4b str. F2365] gi|47091823|ref|ZP_00229618.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 4b H7858] gi|226224761|ref|YP_002758868.1| ribonucleoside-diphosphate reductase, subunit beta [Listeria monocytogenes Clip81459] gi|254825283|ref|ZP_05230284.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J1-194] gi|254853280|ref|ZP_05242628.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL R2-503] gi|254931734|ref|ZP_05265093.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes HPB2262] gi|255519998|ref|ZP_05387235.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J1-175] gi|300764038|ref|ZP_07074034.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes FSL N1-017] gi|46881658|gb|AAT04953.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47019834|gb|EAL10572.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 4b H7858] gi|225877223|emb|CAS05937.1| Putative ribonucleoside-diphosphate reductase, subunit beta [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606640|gb|EEW19248.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL R2-503] gi|293583289|gb|EFF95321.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes HPB2262] gi|293594529|gb|EFG02290.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J1-194] gi|300515379|gb|EFK42430.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes FSL N1-017] gi|313617790|gb|EFR90013.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria innocua FSL S4-378] gi|328465961|gb|EGF37142.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 1816] gi|328472177|gb|EGF43048.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 220] gi|332312605|gb|EGJ25700.1| Ribonucleoside-diphosphate reductase [Listeria monocytogenes str. Scott A] Length = 349 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 76/325 (23%), Positives = 144/325 (44%), Gaps = 18/325 (5%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + R P+I + + + + E L + + EG+ FY+ Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA +L R NKM G + +I RDE H F +VI I ENP L T+E + + Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHD 255 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322 A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W Sbjct: 256 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314 Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345 + D + + +FFE R + Y++ Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339 >gi|325578589|ref|ZP_08148689.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus parainfluenzae ATCC 33392] gi|325159825|gb|EGC71955.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus parainfluenzae ATCC 33392] Length = 376 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + GT D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYAVDGKE 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CVVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + ++P + +E +Q++ + A E +A G +GLN Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKEWADYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F NP PW++ + Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFGARSNPIPWINAWL 340 >gi|268591162|ref|ZP_06125383.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rettgeri DSM 1131] gi|291313388|gb|EFE53841.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rettgeri DSM 1131] Length = 378 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 78/340 (22%), Positives = 141/340 (41%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 35 KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 91 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ E I Sbjct: 92 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAIIFDDIVENEEILK 151 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A + L + F GT + ++ L + E + F Sbjct: 152 RAKDISGFYDDLIEMTNYYHMFGEGTHTCNGKQVTVSLRQLKKQLYLCLMSVNALEAIRF 211 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 212 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAAEC 271 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q+ + +A E +A +G +GLN QY+++I N R +GL+ F+ Sbjct: 272 EQECYDLFVQAAEQEKEWADYLFSEGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFETR 331 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PW++ + + E V+ Y Q +++ D Sbjct: 332 SNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSQVDTD 371 >gi|47095728|ref|ZP_00233334.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 1/2a F6854] gi|254899145|ref|ZP_05259069.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes J0161] gi|254912714|ref|ZP_05262726.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818] gi|254937041|ref|ZP_05268738.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes F6900] gi|47015871|gb|EAL06798.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes str. 1/2a F6854] gi|258609644|gb|EEW22252.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes F6900] gi|293590709|gb|EFF99043.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818] Length = 349 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 76/325 (23%), Positives = 145/325 (44%), Gaps = 18/325 (5%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQYPT---LSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + R P+I + + + + E L + + EG+ FY+ Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA +L R NKM G + +I RDE H F +VI I ENP L T+E + + Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHE 255 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322 A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W Sbjct: 256 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314 Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345 + D + + +FFE R + Y++ Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339 >gi|317048919|ref|YP_004116567.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b] gi|316950536|gb|ADU70011.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b] Length = 376 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKD----- 180 + +II ++ D +F+ I A+A +Y L + GT Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNEQILARAQDISKYYDDLIEMTNYWHLLGEGTHQVAGKT 182 Query: 181 ------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 A ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVDLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ K E + + + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLMRTGEDDPEMKEIAAECRDECYDLFKKAAEQEKEWAEYLFSGGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 303 DILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340 >gi|113461104|ref|YP_719172.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus somnus 129PT] gi|170717681|ref|YP_001784756.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus somnus 2336] gi|112823147|gb|ABI25236.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Haemophilus somnus 129PT] gi|168825810|gb|ACA31181.1| Ribonucleoside-diphosphate reductase [Haemophilus somnus 2336] Length = 376 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNNQLLEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + GT D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYGLYGEGTYTVDGKA 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CKVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + ++P + +E +Q++ + A E +A G +GLN Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYELFVAAAEQEKEWADYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F+ NP PW++ + Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340 >gi|283832326|ref|ZP_06352067.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter youngae ATCC 29220] gi|291071973|gb|EFE10082.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter youngae ATCC 29220] Length = 376 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 41/376 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N+ L P+ G+ VNV AR D KY + + W P EV + Sbjct: 10 KNDQLLEPMFFGQP-VNV-------ARYDQQ-----KYDIFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++ L + E+ + NL + +S+ + +A+ +S PE ++ A Sbjct: 57 SRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 174 GTHTVNGKTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIR 233 Query: 226 YIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ ++P + +E +Q+ + +A L E +A Sbjct: 234 LIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAALQEKEWADYLFR 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339 G +GLN QY+++I N R +GL+ F+ NP PW++ + + E Sbjct: 294 DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVE 353 Query: 340 VTEY---QQGAELKWD 352 V+ Y Q +E+ D Sbjct: 354 VSSYLVGQIDSEVDTD 369 >gi|315304277|ref|ZP_07874626.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria ivanovii FSL F6-596] gi|313627356|gb|EFR96140.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria ivanovii FSL F6-596] Length = 349 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 78/325 (24%), Positives = 144/325 (44%), Gaps = 18/325 (5%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + R P+I + ++ + + E L + + EG+ FY+ Sbjct: 144 RVFELARTHPTIIKRNEPIMEAYDEFMN--------NKTGETLVKALIQSSILEGINFYS 195 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA +L R NKM G + +I RDE H F +VI I ENP L T E + + Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVEYTHE 255 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322 A LE ++ E M +G G++ Y+++ AN+ +G+ L+ ++EN W Sbjct: 256 AFRHAVELETEWSEEVM-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSENTMTW 314 Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345 + D + + +FFE R + Y++ Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339 >gi|325675841|ref|ZP_08155525.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] gi|325553812|gb|EGD23490.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] Length = 335 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 26 NWNRVPDEKDSEVWD---RLTGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGL 79 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P L AF E+VH+ ++ I ++L + F Sbjct: 80 TLLDTIQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFR 139 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA L Y + V + E FY+GF Sbjct: 140 WSEENPNLQRKAQIVLDYY---------------KGDDPLKRKVASTLLESFLFYSGFYL 184 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 185 PMYWASRAKLTNTADVIRLIIRDEAVHGYYIGYKYQRGLERVTEAEREELKNYTFELLFE 244 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 245 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 301 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 302 LSPNADENHDFFSGSGSSYVIGKAVNTEDDDWD 334 >gi|16804193|ref|NP_465678.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes EGD-e] gi|116873587|ref|YP_850368.1| ribonucleotide-diphosphate reductase subunit beta [Listeria welshimeri serovar 6b str. SLCC5334] gi|217963685|ref|YP_002349363.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes HCC23] gi|224500181|ref|ZP_03668530.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes Finland 1988] gi|224501047|ref|ZP_03669354.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL R2-561] gi|254826956|ref|ZP_05231643.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL N3-165] gi|254831409|ref|ZP_05236064.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 10403S] gi|255028522|ref|ZP_05300473.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes LO28] gi|284802601|ref|YP_003414466.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5578] gi|284995743|ref|YP_003417511.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5923] gi|290893101|ref|ZP_06556089.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J2-071] gi|16411624|emb|CAD00232.1| lmo2154 [Listeria monocytogenes EGD-e] gi|116742465|emb|CAK21589.1| ribonucleoside-diphosphate reductase beta chain [Listeria welshimeri serovar 6b str. SLCC5334] gi|217332955|gb|ACK38749.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes HCC23] gi|258599337|gb|EEW12662.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL N3-165] gi|284058163|gb|ADB69104.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5578] gi|284061210|gb|ADB72149.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes 08-5923] gi|290557263|gb|EFD90789.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit NrdB [Listeria monocytogenes FSL J2-071] gi|307571740|emb|CAR84919.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes L99] Length = 349 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 76/325 (23%), Positives = 144/325 (44%), Gaps = 18/325 (5%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + R P+I + + + + E L + + EG+ FY+ Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA +L R NKM G + +I RDE H F +VI I ENP L T+E + + Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHE 255 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322 A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W Sbjct: 256 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314 Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345 + D + + +FFE R + Y++ Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339 >gi|161502570|ref|YP_001569682.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863917|gb|ABX20540.1| hypothetical protein SARI_00614 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 376 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 77/368 (20%), Positives = 145/368 (39%), Gaps = 30/368 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-----------------SPS 173 + +II ++ D +F+ I +A Y L + Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGVGRHTVNGKT 182 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 T ++ ++ L E + FY FA + M G A+ + I RDE+L Sbjct: 183 ITVNLRELKKKLYLCLMSVNA-LEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEAL 241 Query: 234 HLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 HLTGTQHMLNLLRSGVDDPEMADIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLN 301 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---Q 344 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 302 KDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQ 361 Query: 345 QGAELKWD 352 +E+ D Sbjct: 362 IDSEVDTD 369 >gi|189403970|ref|ZP_02786340.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|217327202|ref|ZP_03443285.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|301026864|ref|ZP_07190263.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 196-1] gi|301647674|ref|ZP_07247468.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 146-1] gi|189368305|gb|EDU86721.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|217319569|gb|EEC27994.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|260448673|gb|ACX39095.1| Ribonucleoside-diphosphate reductase [Escherichia coli DH1] gi|299879524|gb|EFI87735.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 196-1] gi|301074204|gb|EFK89010.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 146-1] gi|326339582|gb|EGD63393.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. 1125] Length = 393 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 23 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 81 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 82 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 139 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 140 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 199 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 200 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 259 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 260 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 319 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 320 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 379 Query: 346 GAELKWD 352 +E+ D Sbjct: 380 DSEVDTD 386 >gi|254776333|ref|ZP_05217849.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. avium ATCC 25291] Length = 320 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +DL W + LT E+ M R Sbjct: 11 NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTIRVFTGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + + F Sbjct: 65 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA +QY + V + E FY+GF Sbjct: 125 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAKRQELKDYTYELLFE 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 230 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 319 >gi|297582631|ref|YP_003698411.1| ribonucleoside-diphosphate reductase [Bacillus selenitireducens MLS10] gi|297141088|gb|ADH97845.1| Ribonucleoside-diphosphate reductase [Bacillus selenitireducens MLS10] Length = 347 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 81/328 (24%), Positives = 146/328 (44%), Gaps = 14/328 (4%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 + S + + Y ++ Y + N W E+ MQDD+ W LT E+ + Sbjct: 24 IQGEASGILNWNDIAYPHMYDLYQTLLANFWKAQEINMQDDIKQWA---ELTPAEQDVFL 80 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 R AS +SL + + ++++P + A +EAVH+ ++ Y+++SL ++ Sbjct: 81 RINTQLASLDSLQTPT-MSQVMDYVTDPSFKAIFAIVAQQEAVHNESYSYVLSSLV-NQQ 138 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E ++E AK + +Q + ++ + + L +L V + EG++FY Sbjct: 139 EQTRRFQE-----AKEDPLIQRRNDVILSAYERFRQHPSPQHLFELAVQSLNLEGVYFYA 193 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA L R KM+ + YI RDE H F + + ++P L T+E Q Sbjct: 194 GFAFFYHLARQQKMMKTSTMISYIQRDEMQHAYFMSQFVRILLTDHPELNTRENVQYVYD 253 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 + A LE +A + G++ Y++++ N+R Q+GL LF +NP PW+ Sbjct: 254 AMASAAGLEQEWAA-VILADIDGIDLGEFNGYVEYLVNKRLRQLGLSNLFPERDNPMPWI 312 Query: 324 SEVIDL---KKEKNFFETRVTEYQQGAE 348 D + + +FFE + Y + Sbjct: 313 HVFSDTMMNQTKSDFFEQKSRSYTKVTS 340 >gi|170019452|ref|YP_001724406.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli ATCC 8739] gi|187775748|ref|ZP_02798054.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188024880|ref|ZP_02774660.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|189010171|ref|ZP_02805091.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189402101|ref|ZP_02779989.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189403050|ref|ZP_02792862.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189404930|ref|ZP_02812148.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC869] gi|189405663|ref|ZP_02823406.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC508] gi|208806716|ref|ZP_03249053.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208812585|ref|ZP_03253914.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208820390|ref|ZP_03260710.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209398142|ref|YP_002271641.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|293415528|ref|ZP_06658171.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] gi|300948933|ref|ZP_07162994.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 116-1] gi|300958921|ref|ZP_07171024.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 175-1] gi|307138893|ref|ZP_07498249.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli H736] gi|169754380|gb|ACA77079.1| Ribonucleoside-diphosphate reductase [Escherichia coli ATCC 8739] gi|187771218|gb|EDU35062.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188016038|gb|EDU54160.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|189002108|gb|EDU71094.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189357709|gb|EDU76128.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189362845|gb|EDU81264.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189372811|gb|EDU91227.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC869] gi|189378868|gb|EDU97284.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC508] gi|208726517|gb|EDZ76118.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208733862|gb|EDZ82549.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208740513|gb|EDZ88195.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209159542|gb|ACI36975.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|291433176|gb|EFF06155.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] gi|300314424|gb|EFJ64208.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 175-1] gi|300451587|gb|EFK15207.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 116-1] gi|315136867|dbj|BAJ44026.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli DH1] gi|320192144|gb|EFW66789.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. EC1212] gi|320641061|gb|EFX10540.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. G5101] gi|320646450|gb|EFX15369.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H- str. 493-89] gi|320651547|gb|EFX19927.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H- str. H 2687] gi|320657299|gb|EFX25101.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320667818|gb|EFX34726.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. LSU-61] gi|323936632|gb|EGB32918.1| ribonucleotide reductase [Escherichia coli E1520] gi|323941071|gb|EGB37258.1| ribonucleotide reductase [Escherichia coli E482] gi|326344044|gb|EGD67805.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. 1044] Length = 389 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 19 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 77 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 78 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 135 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 136 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 195 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 196 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 255 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 256 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 315 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 316 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 375 Query: 346 GAELKWD 352 +E+ D Sbjct: 376 DSEVDTD 382 >gi|313622843|gb|EFR93161.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria innocua FSL J1-023] Length = 349 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 76/325 (23%), Positives = 144/325 (44%), Gaps = 18/325 (5%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + R P+I + + + + E L + + EG+ FY+ Sbjct: 144 RVFELARTHPTIIKRNEPIMTAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA +L R NKM G + +I RDE H F +VI I ENP L T+E + + Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHD 255 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322 A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W Sbjct: 256 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314 Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345 + D + + +FFE R + Y++ Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339 >gi|296393703|ref|YP_003658587.1| ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM 44985] gi|296180850|gb|ADG97756.1| Ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM 44985] Length = 334 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 65/357 (18%), Positives = 138/357 (38%), Gaps = 35/357 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + P++ + K++ AR+ + N++ K W+ N W+P +VP+ +D+ Sbjct: 1 MHPLETQNPLPQGEAKQVKLARAVNWNRVADEKDAEVWD---RLVGNFWLPEKVPLSNDI 57 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W + L +DE+ + R +++ + +++ P AF E+ Sbjct: 58 QSWHT---LNEDEQRLTMRVFTGLTLLDTIQGSVGAVSLIPDALTPHEEAVYTNIAFMES 114 Query: 126 VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 VH+ ++ I ++L E F E P++ KA L+ + Sbjct: 115 VHAKSYSSIFSTLTGTPEIDEAFRWSEENPALQKKAAIVLERYR---------------G 159 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + V + E FY+GF + K+ A+ + I+RDE++H + Sbjct: 160 DDPLKRKVASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQ 219 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 + + +E + + ++L + E+ Y + + ++++++ AN+ Sbjct: 220 RGLQMSTPERREELKDFTFSLLFDLYENEVEYTQDLYDPVGL---TEDVKKFLRYNANKA 276 Query: 304 CHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 +G E LF E NP + + + +FF + Y G + WD Sbjct: 277 LMNLGYEGLFPKDETAVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 333 >gi|145633337|ref|ZP_01789068.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus influenzae 3655] gi|144986183|gb|EDJ92773.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus influenzae 3655] Length = 376 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 135/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + GT D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYGEGTYTVDGKK 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + ++P + +E +Q++ + A E A+A G +GLN Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNR 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F+ NP PW++ + Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340 >gi|16801322|ref|NP_471590.1| ribonucleotide-diphosphate reductase subunit beta [Listeria innocua Clip11262] gi|16414770|emb|CAC97486.1| lin2258 [Listeria innocua Clip11262] Length = 349 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 76/325 (23%), Positives = 144/325 (44%), Gaps = 18/325 (5%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + R P+I + + + + E L + + EG+ FY+ Sbjct: 144 RVFELARTHPTIIKRNEPIMAAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA +L R NKM G + +I RDE H F +VI I ENP L T+E + + Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHD 255 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322 A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W Sbjct: 256 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314 Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345 + D + + +FFE R + Y++ Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339 >gi|183599610|ref|ZP_02961103.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827] gi|188021860|gb|EDU59900.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827] Length = 378 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 76/339 (22%), Positives = 141/339 (41%), Gaps = 24/339 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + ++ + + +V + KY + + W P EV + D + Sbjct: 7 IFSQKRNDQLLEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY- 65 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 NGL D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS Sbjct: 66 --NGLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSR 123 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182 ++ +II ++ D +F+ E I +A Y TL + F GT + Sbjct: 124 SYTHIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTLIEMTNYYHMFGEGTHTCNGK 183 Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 ++ L + E + FY FA + M G A+ + I RDE+L Sbjct: 184 QITVSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEAL 243 Query: 234 HLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL ++N ++ ++P + E + + + +A E +A +G +GLN Sbjct: 244 HLTGTQHMLNLLRSGQDDPEMAEIAAECEDECYKLFVDAAEQEKEWAEYLFSEGSMIGLN 303 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 304 KDILCQYVEYITNIRMQAVGLKLPFEARSNPIPWINAWL 342 >gi|304414248|ref|ZP_07395616.1| ribonucleotide reductase beta subunit [Candidatus Regiella insecticola LSR1] gi|304283462|gb|EFL91858.1| ribonucleotide reductase beta subunit [Candidatus Regiella insecticola LSR1] Length = 381 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 136/355 (38%), Gaps = 25/355 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P E+ + D ++ Sbjct: 11 FSQNKNDQLKEPMFFGQSVNVARFDQQKYAIFEKLIEQQLSFFWRPEEIDVSQDRTDYQ- 69 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 70 --KLPPHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRS 127 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDADQE- 184 + +II ++ D +F+ I +A Y L + GT + E Sbjct: 128 YTHIIRNIVNDPSLIFDDIVTNEEILKRAEDISAYYDDLIKMTSYYHLLGEGTHHINSET 187 Query: 185 ----------FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 L + E + FY FA + M G A+ + I RDE+LH Sbjct: 188 ITVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALH 247 Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L +IN ++ ++P + KE Q + +A E +A G +GLN Sbjct: 248 LTGTQHIINLMREGTDDPEMAEIAKECQNNCFELFKKAAEQEKEWATYLFRDGSMIGLNK 307 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY 343 QY+++I N R +GL FK NP PW++ + + E V+ Y Sbjct: 308 DILCQYIEYITNIRMQAVGLALPFKIRSNPIPWINAWLSSDNVQVAPQEVEVSSY 362 >gi|260913913|ref|ZP_05920387.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC 43325] gi|260632000|gb|EEX50177.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC 43325] Length = 376 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 72/338 (21%), Positives = 135/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + + GT + D Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEEIIKRAKDISCYYDDLIRDTQLYTLYGEGTYNVDGQE 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CTVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + ++P + +E +Q++ + A E +A G +GLN Sbjct: 243 LTGTQHILNIMASGQDDPEMAEIVEECKQEAYDLFVAAAEQEKEWASYLFKDGSMIGLNR 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F+ NP PW++ + Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340 >gi|332671991|ref|YP_004454999.1| ribonucleoside-diphosphate reductase [Cellulomonas fimi ATCC 484] gi|332341029|gb|AEE47612.1| Ribonucleoside-diphosphate reductase [Cellulomonas fimi ATCC 484] Length = 326 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W + LT++E+ + R Sbjct: 17 NWNRLEDEKDAEVWD---RLVGNFWLPEKVPVSNDIQSWAT---LTEEEKTLTMRVFTGL 70 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P AF E+VH+ ++ I ++L E F Sbjct: 71 TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEAFR 130 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA ++Y + V + E FY+GF Sbjct: 131 WSEENVNLQRKAEIVMKYY---------------KGDSPLKRKVASTLLESFLFYSGFYL 175 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 176 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKLSPEERQELKDYTFELLFE 235 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + ++++++ AN+ +G E LF E NP + Sbjct: 236 LYDNEVEYTQDLYDGVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 292 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 325 >gi|332290530|ref|YP_004421382.1| ribonucleotide-diphosphate reductase subunit beta [Gallibacterium anatis UMN179] gi|330433426|gb|AEC18485.1| ribonucleotide-diphosphate reductase subunit beta [Gallibacterium anatis UMN179] Length = 376 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 135/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++S Sbjct: 6 FSQHKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQS 65 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 66 ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + GT D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNQEIIKRARDISAYYDDLIRDSQLYSLYGEGTYTVDGKE 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 YQVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + ++P + +E QQ++ + A E +A+ G +GLN Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECQQEAYDLFVAAAEQEKEWANYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F NP PW++ + Sbjct: 303 DILCQYVEYITNIRMQAVGLPLPFTTRSNPIPWINAWL 340 >gi|289435502|ref|YP_003465374.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171746|emb|CBH28292.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632343|gb|EFR99385.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria seeligeri FSL N1-067] gi|313636848|gb|EFS02469.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria seeligeri FSL S4-171] Length = 349 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 76/325 (23%), Positives = 144/325 (44%), Gaps = 18/325 (5%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQK 143 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + R P+I + + + + E L + + EG+ FY+ Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA +L R NKM G + +I RDE H F +VI I ENP L T+E + + Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHE 255 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322 A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W Sbjct: 256 AFRHAVDLETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314 Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345 + D + + +FFE R + Y++ Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339 >gi|169630485|ref|YP_001704134.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium abscessus ATCC 19977] gi|169242452|emb|CAM63480.1| Probable ribonucleoside-diphosphate reductase beta subunit [Mycobacterium abscessus] Length = 324 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 128/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +D+ W + LTD E+ + R Sbjct: 15 NWNRVPDEKDAEVWD---RLTGNFWLPEKVPVSNDIQSWNT---LTDHEKQLTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P AF E+VH+ ++ I ++L + F Sbjct: 69 TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDDAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA ++Y + D+ + + + E FY+GF Sbjct: 129 WSEENPNLQRKAEIVMEYYR-------------GDEPLKRKV--ASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E ++ + +L+E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERVDEAKRAEIKEYTYDLLYE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 234 LYENETDYTEDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPREETDVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323 >gi|56412825|ref|YP_149900.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361758|ref|YP_002141394.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127082|gb|AAV76588.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093234|emb|CAR58679.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 376 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIETTSYWHLLGEGTHTVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEVDTD 369 >gi|1942079|pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain gi|1942080|pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain gi|15825694|pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli Oxidized By Nitric Oxide gi|15825695|pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli Oxidized By Nitric Oxide gi|15826771|pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli Oxidized By Hydrogen Peroxide And Hydroxylamine gi|15826772|pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli Oxidized By Hydrogen Peroxide And Hydroxylamine gi|29726528|pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2 From E. Coli In Its Oxidised (Met) Form gi|29726529|pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2 From E. Coli In Its Oxidised (Met) Form Length = 375 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 64 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 122 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361 Query: 346 GAELKWD 352 +E+ D Sbjct: 362 DSEVDTD 368 >gi|282600304|ref|ZP_05973774.2| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] gi|282565783|gb|EFB71318.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] Length = 380 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 75/339 (22%), Positives = 138/339 (40%), Gaps = 24/339 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + +K + + +V + KY + + W P EV + D + Sbjct: 9 IFSQKKNDQLQEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY- 67 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L D E+ + NL + +S+ + +A +S PE ++ +F E +HS Sbjct: 68 --NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSR 125 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKD---- 180 ++ +II ++ D +F+ E I +A Y L + F GT Sbjct: 126 SYTHIIRNIVNDPAIIFDDIVENEEILKRAKDISAYYDKLIEMTNYYHMFGEGTHTFGGK 185 Query: 181 -------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 ++ L + E + FY FA + M G A+ + I RDE+L Sbjct: 186 QIVVSLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEAL 245 Query: 234 HLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL ++N ++ ++P + E +++ + +A E +A +G +GLN Sbjct: 246 HLTGTQHMLNLLRSGQDDPEMAEIAAECEEQCYQLFVDAAEQEKEWAEYLFSEGSMIGLN 305 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 306 KEILCQYVEYITNIRMQAVGLKLPFEARSNPIPWINAWL 344 >gi|194427189|ref|ZP_03059740.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B171] gi|194436109|ref|ZP_03068211.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 101-1] gi|300918603|ref|ZP_07135191.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 115-1] gi|300931418|ref|ZP_07146747.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 187-1] gi|301303305|ref|ZP_07209430.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 124-1] gi|194414810|gb|EDX31081.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B171] gi|194424837|gb|EDX40822.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 101-1] gi|300414255|gb|EFJ97565.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 115-1] gi|300460788|gb|EFK24281.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 187-1] gi|300841479|gb|EFK69239.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 124-1] gi|323961541|gb|EGB57149.1| ribonucleotide reductase [Escherichia coli H489] gi|323973062|gb|EGB68256.1| ribonucleotide reductase [Escherichia coli TA007] Length = 393 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 23 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 81 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 82 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 139 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 140 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 199 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 200 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 259 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 260 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 319 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 320 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 379 Query: 346 GAELKWD 352 AE+ D Sbjct: 380 DAEVDTD 386 >gi|326564074|gb|EGE14316.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 103P14B1] gi|326570555|gb|EGE20595.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis BC8] gi|326573198|gb|EGE23167.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis CO72] Length = 361 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 79/346 (22%), Positives = 142/346 (41%), Gaps = 13/346 (3%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + L +V++ +Y + + W P E+ + D + Sbjct: 4 VFNPNPNDATQEPMFLGESVNVSRFDKQRYPIFEQLTEKQISFFWRPEEIDVSKDRRDF- 62 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L + E+ + NL + +S+ + + + +S PE ++ AF E++H+ Sbjct: 63 --IELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPELETWIETWAFFESIHAR 120 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT-KDADQEFLQD 188 ++ +II ++ + E+ + P I +A +Y L S S K D L+ Sbjct: 121 SYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLSLEYQQGKQVDMYELRK 180 Query: 189 LFVFYV----VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V E + FY FA + M G A+ + I RDE+LHLN ++ Sbjct: 181 RLYLCIMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKLIARDEALHLNGTQHILTL 240 Query: 245 IKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIAN 301 + E+ T+ + + + A E A+ G +GLN QY+Q+I + Sbjct: 241 LVKEHEDYQTITQTCKDEIYDIFESAYEQERAWIDYLFKDGSMIGLNKEILTQYLQYITD 300 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQG 346 R IGLEP+F T+NP PW++ + + ET +T Y G Sbjct: 301 IRMSAIGLEPVFN-TKNPIPWINNWLSSDNVQVAPQETEITSYVVG 345 >gi|320175005|gb|EFW50120.1| ribonucleotide-diphosphate reductase subunit beta [Shigella dysenteriae CDC 74-1112] Length = 376 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFTSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEVDTD 369 >gi|326567429|gb|EGE17544.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis BC1] Length = 361 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 79/346 (22%), Positives = 142/346 (41%), Gaps = 13/346 (3%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + L +V++ +Y + + W P E+ + D + Sbjct: 4 VFNPNPNDATQEPMFLGESVNVSRFDKQRYPIFEQLTEKQISFFWRPEEIDVSKDRRDF- 62 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L + E+ + NL + +S+ + + + +S PE ++ AF E++H+ Sbjct: 63 --IELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPELETWIETWAFFESIHAR 120 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT-KDADQEFLQD 188 ++ +II ++ + E+ + P I +A +Y L S S K D L+ Sbjct: 121 SYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLSLEYQQGKQVDMYELRK 180 Query: 189 LFVFYV----VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V E + FY FA + M G A+ + I RDE+LHLN ++ Sbjct: 181 RLYLCIMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKLIARDEALHLNGTQHILTL 240 Query: 245 IKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIAN 301 + E+ T+ + + + A E A+ G +GLN QY+Q+I + Sbjct: 241 LVKEHEDYQTITQTCKDEIYDIFESAYEQERAWIDYLFKDGSMIGLNKEILTQYLQYITD 300 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQG 346 R IGLEP+F T+NP PW++ + + ET +T Y G Sbjct: 301 IRMSAIGLEPVFN-TKNPIPWINNWLSSDNVQVAPQETEITSYVVG 345 >gi|237732274|ref|ZP_04562755.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp. 30_2] gi|226907813|gb|EEH93731.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp. 30_2] Length = 376 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 153/376 (40%), Gaps = 41/376 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N+ L P+ G+ VNV AR D KY + + W P EV + Sbjct: 10 KNDQLLEPMFFGQP-VNV-------ARYDQQ-----KYDIFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++ L + E+ + NL + +S+ + +A+ +S PE ++ A Sbjct: 57 SRDRIDFQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 174 GTHTVNGKTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIR 233 Query: 226 YIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ ++P + +E +Q+ + +A L E +A Sbjct: 234 LIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAALQEKEWADYLFR 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339 G +GLN QY+++I N R +GL+ F+ NP PW++ + + E Sbjct: 294 DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVE 353 Query: 340 VTEY---QQGAELKWD 352 V+ Y Q AE+ D Sbjct: 354 VSSYLVGQIDAEVDTD 369 >gi|319944853|ref|ZP_08019115.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia mirabilis ATCC 51599] gi|319741423|gb|EFV93848.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia mirabilis ATCC 51599] Length = 333 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 70/345 (20%), Positives = 125/345 (36%), Gaps = 34/345 (9%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + R + + N+L K W N W+P +VP+ +D+ W + L ++ Sbjct: 12 NKEKARKVPLAINWNRLQDEKDLEVWN---RLTANFWLPEKVPLSNDVQSWAT---LREE 65 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ + R +++ ++ P L AF EAVH+ ++ I ++ Sbjct: 66 EQTLTIRVFTGLTLLDTIQNTVGAPSMMPDAQTPHEEAVLTNIAFMEAVHARSYSSIFST 125 Query: 138 LGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 L E F E P + AKA L+ S P + V Sbjct: 126 LCSTREVDEAFRWSEENPQLQAKARLILEEYDAASDP--------------LQRKIASVF 171 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 E FY+GF + K+ A+ + I+RDE++H + + P Sbjct: 172 LESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQRALARLPEADQA 231 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + + ++L E +E Y E + + + ++ + AN+ +G E LF Sbjct: 232 RLKDFAFSLLFELYEVEALYTEELYDRIGL---TEDVKAFLHYNANKALQNLGYEALFPP 288 Query: 316 TE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 NP + D + +FF + Y G + WD Sbjct: 289 AACEVNPAILSALSPDSE-NHDFFSGSGSSYVIGKAVATEDEDWD 332 >gi|205353394|ref|YP_002227195.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273175|emb|CAR38137.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628485|gb|EGE34828.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 376 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VVVNLRDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEVDTD 369 >gi|193068232|ref|ZP_03049196.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E110019] gi|300903617|ref|ZP_07121535.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 84-1] gi|300926340|ref|ZP_07142140.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 182-1] gi|301328725|ref|ZP_07221778.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 78-1] gi|30041924|gb|AAP17650.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella flexneri 2a str. 2457T] gi|56383622|gb|AAN43832.2| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella flexneri 2a str. 301] gi|192958511|gb|EDV88950.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E110019] gi|300404353|gb|EFJ87891.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 84-1] gi|300417617|gb|EFK00928.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 182-1] gi|300844873|gb|EFK72633.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 78-1] gi|315255170|gb|EFU35138.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 85-1] Length = 389 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 19 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 77 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 78 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 135 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 136 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 195 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 196 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 255 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 256 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 315 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 316 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 375 Query: 346 GAELKWD 352 AE+ D Sbjct: 376 DAEVDTD 382 >gi|300897697|ref|ZP_07116095.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 198-1] gi|301022393|ref|ZP_07186277.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 69-1] gi|331683911|ref|ZP_08384507.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H299] gi|300358575|gb|EFJ74445.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 198-1] gi|300397543|gb|EFJ81081.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 69-1] gi|323967677|gb|EGB63089.1| ribonucleotide reductase [Escherichia coli M863] gi|331078863|gb|EGI50065.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H299] Length = 393 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 23 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 81 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 82 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 139 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 140 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 199 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 200 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 259 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 260 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 319 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 320 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 379 Query: 346 GAELKWD 352 +E+ D Sbjct: 380 DSEVDTD 386 >gi|312967536|ref|ZP_07781751.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 2362-75] gi|312287733|gb|EFR15638.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 2362-75] Length = 359 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 139/340 (40%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 16 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 72 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 73 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 132 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + GT + ++ L + E + F Sbjct: 133 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRF 192 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + +E Sbjct: 193 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 252 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q+ + +A E +A G +GLN QY+++I N R +GL+ F+ Sbjct: 253 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR 312 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PW++ + + E V+ Y Q AE+ D Sbjct: 313 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTD 352 >gi|152979144|ref|YP_001344773.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus succinogenes 130Z] gi|150840867|gb|ABR74838.1| Ribonucleoside-diphosphate reductase [Actinobacillus succinogenes 130Z] Length = 376 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 135/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQNKNDQLLEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + GT D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYSLYGEGTYQVDGKE 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CAVTLRNLKKRLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + ++P + +E +Q++ + A E A+A G +GLN Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F+ NP PW++ + Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFEARSNPIPWINAWL 340 >gi|15802782|ref|NP_288809.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 EDL933] gi|15832372|ref|NP_311145.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. Sakai] gi|16130170|ref|NP_416738.1| ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. MG1655] gi|82544520|ref|YP_408467.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii Sb227] gi|82777644|ref|YP_403993.1| ribonucleotide-diphosphate reductase subunit beta [Shigella dysenteriae Sd197] gi|89109052|ref|AP_002832.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli str. K-12 substr. W3110] gi|157161718|ref|YP_001459036.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli HS] gi|170081853|ref|YP_001731173.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. DH10B] gi|187731010|ref|YP_001881065.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii CDC 3083-94] gi|188495860|ref|ZP_03003130.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 53638] gi|195935609|ref|ZP_03080991.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. EC4024] gi|218548311|ref|YP_002382102.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia fergusonii ATCC 35469] gi|218705765|ref|YP_002413284.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UMN026] gi|238901409|ref|YP_002927205.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli BW2952] gi|254794126|ref|YP_003078963.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. TW14359] gi|256022083|ref|ZP_05435948.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 4_1_40B] gi|261223312|ref|ZP_05937593.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. FRIK2000] gi|261259138|ref|ZP_05951671.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. FRIK966] gi|293405702|ref|ZP_06649694.1| nrdB [Escherichia coli FVEC1412] gi|293410599|ref|ZP_06654175.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|298381383|ref|ZP_06990982.1| nrdB [Escherichia coli FVEC1302] gi|309785072|ref|ZP_07679705.1| ribonucleoside-diphosphate reductase 1, subunit beta [Shigella dysenteriae 1617] gi|312973510|ref|ZP_07787682.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 1827-70] gi|57014104|sp|P69924|RIR2_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta; AltName: Full=Protein B2; AltName: Full=Protein R2; AltName: Full=Ribonucleotide reductase 1 gi|57014105|sp|P69925|RIR2_ECO57 RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta; AltName: Full=Protein B2; AltName: Full=Protein R2; AltName: Full=Ribonucleotide reductase 1 gi|12516573|gb|AAG57364.1|AE005456_1 ribonucleoside diphosphage reductase 1, beta subunit, B2 [Escherichia coli O157:H7 str. EDL933] gi|146967|gb|AAA24224.1| ribonucleoside diphosphate reductase B2 subunit precursor [Escherichia coli] gi|1788567|gb|AAC75295.1| ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. MG1655] gi|1799582|dbj|BAA16054.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli str. K12 substr. W3110] gi|13362587|dbj|BAB36541.1| ribonucleoside-diphosphate reductase 1 beta subunit [Escherichia coli O157:H7 str. Sakai] gi|81241792|gb|ABB62502.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella dysenteriae Sd197] gi|81245931|gb|ABB66639.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella boydii Sb227] gi|157067398|gb|ABV06653.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli HS] gi|169889688|gb|ACB03395.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. DH10B] gi|187428002|gb|ACD07276.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella boydii CDC 3083-94] gi|188491059|gb|EDU66162.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 53638] gi|218355852|emb|CAQ88465.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia fergusonii ATCC 35469] gi|218432862|emb|CAR13756.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli UMN026] gi|238863475|gb|ACR65473.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli BW2952] gi|254593526|gb|ACT72887.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli O157:H7 str. TW14359] gi|284922226|emb|CBG35308.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli 042] gi|291427910|gb|EFF00937.1| nrdB [Escherichia coli FVEC1412] gi|291471067|gb|EFF13551.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|298278825|gb|EFI20339.1| nrdB [Escherichia coli FVEC1302] gi|308927442|gb|EFP72916.1| ribonucleoside-diphosphate reductase 1, subunit beta [Shigella dysenteriae 1617] gi|309702545|emb|CBJ01872.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli ETEC H10407] gi|310332105|gb|EFP99340.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 1827-70] gi|315615496|gb|EFU96128.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 3431] gi|320184866|gb|EFW59654.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri CDC 796-83] gi|320663001|gb|EFX30318.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O55:H7 str. USDA 5905] gi|327252504|gb|EGE64163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli STEC_7v] gi|332094036|gb|EGI99088.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella boydii 3594-74] gi|332344015|gb|AEE57349.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli UMNK88] Length = 376 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEVDTD 369 >gi|332093862|gb|EGI98916.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella boydii 5216-82] Length = 376 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVSLCELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 AE+ D Sbjct: 363 DAEVDTD 369 >gi|331663742|ref|ZP_08364652.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA143] gi|323977567|gb|EGB72653.1| ribonucleotide reductase [Escherichia coli TW10509] gi|331059541|gb|EGI31518.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA143] Length = 389 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 19 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 77 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 78 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 135 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 136 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 195 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 196 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 255 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 256 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 315 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 316 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 375 Query: 346 GAELKWD 352 +E+ D Sbjct: 376 DSEVDTD 382 >gi|190896512|gb|ACE96769.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896530|gb|ACE96778.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|170767354|ref|ZP_02901807.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia albertii TW07627] gi|170123688|gb|EDS92619.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia albertii TW07627] Length = 376 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 147/367 (40%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A +Y L + GT + Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISRYYDELIEMTSYWHLLGEGTHTVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 AE+ D Sbjct: 363 DAEVDTD 369 >gi|300936793|ref|ZP_07151685.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 21-1] gi|300458078|gb|EFK21571.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 21-1] Length = 405 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 35 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 93 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 94 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 151 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 152 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 211 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 212 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 271 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 272 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 331 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 332 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 391 Query: 346 GAELKWD 352 AE+ D Sbjct: 392 DAEVDTD 398 >gi|290473788|ref|YP_003466662.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus bovienii SS-2004] gi|289173095|emb|CBJ79868.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus bovienii SS-2004] Length = 376 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 72/311 (23%), Positives = 128/311 (41%), Gaps = 24/311 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVAFLPLISIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVANEQILK 149 Query: 158 KANWALQYTQTLSS-----PSFTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L GT + A ++ L + E + F Sbjct: 150 RAKDISGYYDVLIEMTNYYHQLGEGTYNVAGKNITVSLRALKKQLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + +E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRSGQDDPEMAEIAREC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q+ + +A E +A G +GLN QY+++I N R +GL+ F+ Sbjct: 270 EQQCYDLFVQAAEQEKEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFEAR 329 Query: 317 ENPFPWMSEVI 327 NP PW++ + Sbjct: 330 SNPIPWINAWL 340 >gi|327394563|dbj|BAK11985.1| ribonucleoside-diphosphate reductase 1 beta subunit NrdB [Pantoea ananatis AJ13355] Length = 376 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 135/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I A+A QY L + GT + Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDLIEMTSYWHLLGEGTHQVNGKS 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ K E +++ + +A L E +A G +GLN Sbjct: 243 LTGTQHMLNLLRTGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 303 DILCQYIEYITNIRMQAVGLDLPFETRSNPIPWINAWL 340 >gi|157144813|ref|YP_001452132.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter koseri ATCC BAA-895] gi|157082018|gb|ABV11696.1| hypothetical protein CKO_00540 [Citrobacter koseri ATCC BAA-895] Length = 376 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 81/367 (22%), Positives = 148/367 (40%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++S Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQS 65 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 66 ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + + Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISHYYDELIEMTSYWHLLGEGTHNVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ I++P + +E +Q + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGIDDPEMAEIAEESKQACYDLFVQAAQQEKEWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GLE F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLELPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEVDTD 369 >gi|145634465|ref|ZP_01790175.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus influenzae PittAA] gi|229845068|ref|ZP_04465204.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 6P18H1] gi|229846892|ref|ZP_04466999.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 7P49H1] gi|145268445|gb|EDK08439.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus influenzae PittAA] gi|229810381|gb|EEP46100.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 7P49H1] gi|229812040|gb|EEP47733.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 6P18H1] Length = 376 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S ++ GT D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYSEGTYTVDGKE 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + L +E +Q++ + A E A+A G +GLN Sbjct: 243 LTGTQHILNIMAAGQDDLEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNR 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F+ NP PW++ + Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340 >gi|16273547|ref|NP_439802.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae Rd KW20] gi|68250262|ref|YP_249374.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 86-028NP] gi|145629252|ref|ZP_01785051.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 22.1-21] gi|145631490|ref|ZP_01787259.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae R3021] gi|145639184|ref|ZP_01794791.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittII] gi|145641092|ref|ZP_01796673.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae R3021] gi|260581255|ref|ZP_05849073.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae RdAW] gi|260582634|ref|ZP_05850423.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae NT127] gi|319776092|ref|YP_004138580.1| ribonucleoside-diphosphate reductase subunit beta [Haemophilus influenzae F3047] gi|319896901|ref|YP_004135096.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus influenzae F3031] gi|329123256|ref|ZP_08251824.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus aegyptius ATCC 11116] gi|1172943|sp|P43755|RIR2_HAEIN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|1574510|gb|AAC23306.1| ribonucleoside diphosphate reductase, beta chain (nrdB) [Haemophilus influenzae Rd KW20] gi|68058461|gb|AAX88714.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus influenzae 86-028NP] gi|144978755|gb|EDJ88478.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 22.1-21] gi|144982920|gb|EDJ90433.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae R3021] gi|145271746|gb|EDK11656.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittII] gi|145274253|gb|EDK14118.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 22.4-21] gi|260092082|gb|EEW76027.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae RdAW] gi|260094306|gb|EEW78205.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae NT127] gi|301170418|emb|CBW30024.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Haemophilus influenzae 10810] gi|309750762|gb|ADO80746.1| Ribonucleoside diphosphate reductase 1, beta subunit [Haemophilus influenzae R2866] gi|309972945|gb|ADO96146.1| Ribonucleoside diphosphate reductase 1, beta subunit [Haemophilus influenzae R2846] gi|317432405|emb|CBY80760.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus influenzae F3031] gi|317450683|emb|CBY86903.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus influenzae F3047] gi|327471465|gb|EGF16913.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus aegyptius ATCC 11116] Length = 376 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 135/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + GT D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYGEGTYTVDGKE 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + ++P + +E +Q++ + A E A+A G +GLN Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNR 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F+ NP PW++ + Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340 >gi|283786035|ref|YP_003365900.1| ribonucleoside-diphosphate reductase 1 beta chain [Citrobacter rodentium ICC168] gi|282949489|emb|CBG89102.1| ribonucleoside-diphosphate reductase 1 beta chain [Citrobacter rodentium ICC168] Length = 376 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 147/367 (40%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLDEGTHTVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A L E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAALQEKEWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEVDTD 369 >gi|254820788|ref|ZP_05225789.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium intracellulare ATCC 13950] Length = 324 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +DL W + LT E+ M R Sbjct: 15 NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDLPSWGT---LTAHEKQMTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + + F Sbjct: 69 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA +QY + V + E FY+GF Sbjct: 129 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDARKQELKDYTYELLFE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323 >gi|237678830|emb|CAQ57557.1| NrdB protein [Bradyrhizobium elkanii] Length = 360 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 82/328 (25%), Positives = 141/328 (42%), Gaps = 28/328 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y WA+E + HWM EVP+ DL W S + +TD ER ++ + FF S+ V Sbjct: 36 RYAWAYEFWKRQQQTHWMGEEVPLGADLKDWAS-DRVTDSERALLTQIFRFFTQSDIEVG 94 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +N + + + E VH + ++ +LG+ + E F +R + A Sbjct: 95 DNYLKRYIPIFQPLTVQMMMAAFTNMETVHIDAYALLLKTLGMPKTE-FEAFRGYSEMRA 153 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA++ D + + L +F EGM + FA +L+ R NKM Sbjct: 154 KADYM------------HEFGVDTVADVARTLAMFGAFTEGMALFASFAMLLNFPRHNKM 201 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + + +RDESLH I + ++ E T+ + + LE + Sbjct: 202 NGMGQIVSWSVRDESLHCEGIIKLFHEWNRETG-AVTRSVRDDIVDVAKTMVKLEENFVD 260 Query: 278 ETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-----------NPFPWMSE 325 G + + Y++++A+ R Q+ + P+F + E +P PW+ E Sbjct: 261 LAFGLGKIEGMRPEQIHTYVRYVADWRLTQLRIAPVFGFFEAKEGGFTQLKAHPLPWLVE 320 Query: 326 VIDLKKEKNFFETRVTEYQQGAE-LKWD 352 +++ + NFFE R TEY + A WD Sbjct: 321 ILNGVEHANFFEQRATEYSKAASRGSWD 348 >gi|312140539|ref|YP_004007875.1| ribonucleoside-diphosphate reductase nrdf [Rhodococcus equi 103S] gi|311889878|emb|CBH49195.1| ribonucleoside-diphosphate reductase NrdF [Rhodococcus equi 103S] Length = 329 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 20 NWNRVPDEKDSEVWD---RLTGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGL 73 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P L AF E+VH+ ++ I ++L + F Sbjct: 74 TLLDTIQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFR 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA L Y + V + E FY+GF Sbjct: 134 WSEENPNLQRKAQIVLDYY---------------KGDDPLKRKVASTLLESFLFYSGFYL 178 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 179 PMYWASRAKLTNTADVIRLIIRDEAVHGYYIGYKYQRGLERVTEAEREELKNYTFELLFE 238 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 239 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 295 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAVNTEDDDWD 328 >gi|291618170|ref|YP_003520912.1| NrdB [Pantoea ananatis LMG 20103] gi|291153200|gb|ADD77784.1| NrdB [Pantoea ananatis LMG 20103] Length = 387 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 135/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 17 FSQNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 75 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 76 --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRS 133 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I A+A QY L + GT + Sbjct: 134 YTHIIRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDLIEMTSYWHLLGEGTHQVNGKS 193 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 194 VTVSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 253 Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ K E +++ + +A L E +A G +GLN Sbjct: 254 LTGTQHMLNLLRTGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNK 313 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 314 DILCQYIEYITNIRMQAVGLDLPFETRSNPIPWINAWL 351 >gi|291283479|ref|YP_003500297.1| Ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Escherichia coli O55:H7 str. CB9615] gi|290763352|gb|ADD57313.1| Ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Escherichia coli O55:H7 str. CB9615] Length = 389 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 19 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 77 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 78 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 135 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 136 YTHIIRNIVNDPSVVFDDIITNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 195 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 196 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 255 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 256 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 315 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 316 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 375 Query: 346 GAELKWD 352 +E+ D Sbjct: 376 DSEVDTD 382 >gi|15602584|ref|NP_245656.1| ribonucleotide-diphosphate reductase subunit beta [Pasteurella multocida subsp. multocida str. Pm70] gi|12721013|gb|AAK02803.1| NrdB [Pasteurella multocida subsp. multocida str. Pm70] Length = 376 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 135/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + GT + D Sbjct: 123 YTHIIRNIVNDPSVIFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYTLYGEGTYNVDGQD 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CVVTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + ++P + +E +Q++ + A E +A G +GLN Sbjct: 243 LTGTQHILNIMASGQDDPEMAEIVEECKQEAYDLFVAAAEQEKEWADYLFKDGSMIGLNR 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F+ NP PW++ + Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340 >gi|33358114|pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2 Subunit, D84e Mutant gi|33358115|pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2 Subunit, D84e Mutant gi|33358116|pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-D84e Mutant Containing Oxo-Bridged Diferric Cluster gi|33358117|pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-D84e Mutant Containing Oxo-Bridged Diferric Cluster gi|42543285|pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With Ferrous Ions At Neutral Ph gi|42543286|pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With Ferrous Ions At Neutral Ph Length = 375 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + ES+ + +A+ +S PE ++ AF E +HS + Sbjct: 64 --ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 122 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F NP PW++ + + E V+ Y Q Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361 Query: 346 GAELKWD 352 +E+ D Sbjct: 362 DSEVDTD 368 >gi|324112772|gb|EGC06748.1| ribonucleotide reductase [Escherichia fergusonii B253] Length = 389 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 19 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 77 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 78 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 135 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 136 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKT 195 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 196 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 255 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 256 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 315 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 316 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 375 Query: 346 GAELKWD 352 +E+ D Sbjct: 376 DSEVDTD 382 >gi|16765605|ref|NP_461220.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62180851|ref|YP_217268.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613001|ref|YP_001586966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549728|ref|ZP_02343487.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992612|ref|ZP_02573709.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168237293|ref|ZP_02662351.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242393|ref|ZP_02667325.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261709|ref|ZP_02683682.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466025|ref|ZP_02699895.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817991|ref|ZP_02829991.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442577|ref|YP_002041539.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449379|ref|YP_002046332.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194735273|ref|YP_002115349.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247637|ref|YP_002147234.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262505|ref|ZP_03162579.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242288|ref|YP_002216347.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387602|ref|ZP_03214214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929071|ref|ZP_03220214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207857697|ref|YP_002244348.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213161593|ref|ZP_03347303.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|224583238|ref|YP_002637036.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|1172945|sp|P37427|RIR2_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta; AltName: Full=Protein B2; AltName: Full=Protein R2; AltName: Full=Ribonucleotide reductase 1 gi|510349|emb|CAA51453.1| nrdB [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420817|gb|AAL21179.1| ribonucleoside-diphosphate reductase 1, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128484|gb|AAX66187.1| ribonucleoside-diphosphate reductase 1, beta subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362365|gb|ABX66133.1| hypothetical protein SPAB_00707 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401240|gb|ACF61462.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407683|gb|ACF67902.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194710775|gb|ACF89996.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631367|gb|EDX49927.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211340|gb|ACH48737.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240760|gb|EDY23380.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289678|gb|EDY29041.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936804|gb|ACH74137.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604700|gb|EDZ03245.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321615|gb|EDZ06814.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325266|gb|EDZ13105.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329222|gb|EDZ15986.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338588|gb|EDZ25352.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344845|gb|EDZ31609.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349363|gb|EDZ35994.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709500|emb|CAR33844.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467765|gb|ACN45595.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247486|emb|CBG25313.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994368|gb|ACY89253.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158836|emb|CBW18349.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913268|dbj|BAJ37242.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086715|emb|CBY96487.1| ribonucleoside diphosphage reductase 1, beta subunit, B2 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223022|gb|EFX48093.1| Ribonucleotide reductase of class Ia aerobic, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617030|gb|EFY13936.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617664|gb|EFY14563.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624706|gb|EFY21535.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630255|gb|EFY27025.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634436|gb|EFY31169.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639146|gb|EFY35838.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640143|gb|EFY36809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645769|gb|EFY42293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651544|gb|EFY47919.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656105|gb|EFY52404.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659457|gb|EFY55704.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665919|gb|EFY62102.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669843|gb|EFY65984.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673828|gb|EFY69925.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678586|gb|EFY74642.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683618|gb|EFY79632.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687694|gb|EFY83664.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715327|gb|EFZ06898.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130608|gb|ADX18038.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323196209|gb|EFZ81366.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198377|gb|EFZ83479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204185|gb|EFZ89196.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208571|gb|EFZ93510.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212337|gb|EFZ97160.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218256|gb|EGA02966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222986|gb|EGA07335.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227421|gb|EGA11586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232251|gb|EGA16354.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235716|gb|EGA19800.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241124|gb|EGA25160.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244866|gb|EGA28868.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248577|gb|EGA32508.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251597|gb|EGA35465.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255474|gb|EGA39237.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263076|gb|EGA46622.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268136|gb|EGA51613.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270771|gb|EGA54209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624097|gb|EGE30442.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332989211|gb|AEF08194.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 376 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEVDTD 369 >gi|170682190|ref|YP_001744431.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli SMS-3-5] gi|170519908|gb|ACB18086.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli SMS-3-5] gi|315285847|gb|EFU45287.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 110-3] gi|315298059|gb|EFU57328.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 16-3] Length = 393 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 23 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 81 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 82 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 139 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 140 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 199 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 200 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 259 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 260 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 319 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 320 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 379 Query: 346 GAELKWD 352 AE+ D Sbjct: 380 DAEVDTD 386 >gi|296103863|ref|YP_003614009.1| ribonucleotide-diphosphate reductase beta subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058322|gb|ADF63060.1| ribonucleotide-diphosphate reductase beta subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 376 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + + Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMTSYWHLLGEGTHNVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEVNTD 369 >gi|218690398|ref|YP_002398610.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli ED1a] gi|218427962|emb|CAR08882.2| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli ED1a] Length = 376 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKA 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 AE+ D Sbjct: 363 DAEVDTD 369 >gi|253989035|ref|YP_003040391.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638141|emb|CAR66767.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid reductase 1) (b2 protein) (r2 protein) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780485|emb|CAQ83647.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid reductase 1) (b2 protein) (r2 protein) [Photorhabdus asymbiotica] Length = 376 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 135/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQVKNDQLQEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A +S PE ++ +F E +HS + Sbjct: 64 -NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKD----- 180 + +II ++ D +F+ I +A Y L + F GT Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEEILKRAKDISAYYDDLIEMTNNYQLFGEGTHQIAGKT 182 Query: 181 ------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 ITVSLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + E +Q+ + +A E +A +G +GLN Sbjct: 243 LTGTQHMLNLLRSGQDDPEMAEIANECEQQCYDLFVQAAEQEKEWADYLFSEGSMIGLNR 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 303 DILCQYVEYITNIRMQAVGLKLPFETRSNPIPWINAWL 340 >gi|41409193|ref|NP_962029.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398013|gb|AAS05643.1| NrdG [Mycobacterium avium subsp. paratuberculosis K-10] Length = 324 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +DL W + LT E+ M R Sbjct: 15 NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + + F Sbjct: 69 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA +QY + V + E FY+GF Sbjct: 129 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAKRQELKDYTYELLFE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323 >gi|26248623|ref|NP_754663.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli CFT073] gi|74312755|ref|YP_311174.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei Ss046] gi|91211528|ref|YP_541514.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UTI89] gi|110642443|ref|YP_670173.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 536] gi|157157492|ref|YP_001463584.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli E24377A] gi|161485800|ref|NP_708125.3| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 2a str. 301] gi|161486465|ref|NP_837840.2| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 2a str. 2457T] gi|191166513|ref|ZP_03028343.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B7A] gi|191170278|ref|ZP_03031832.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli F11] gi|194433322|ref|ZP_03065602.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella dysenteriae 1012] gi|209919687|ref|YP_002293771.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli SE11] gi|215487452|ref|YP_002329883.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O127:H6 str. E2348/69] gi|218554798|ref|YP_002387711.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli IAI1] gi|218559152|ref|YP_002392065.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli S88] gi|218695841|ref|YP_002403508.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 55989] gi|218700706|ref|YP_002408335.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli IAI39] gi|227887293|ref|ZP_04005098.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 83972] gi|253772842|ref|YP_003035673.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162246|ref|YP_003045354.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli B str. REL606] gi|256017603|ref|ZP_05431468.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] gi|260844831|ref|YP_003222609.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O103:H2 str. 12009] gi|260856285|ref|YP_003230176.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O26:H11 str. 11368] gi|260868965|ref|YP_003235367.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O111:H- str. 11128] gi|293446578|ref|ZP_06663000.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|300818165|ref|ZP_07098377.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 107-1] gi|300822109|ref|ZP_07102251.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 119-7] gi|300981251|ref|ZP_07175428.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 200-1] gi|300983269|ref|ZP_07176508.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 45-1] gi|301048988|ref|ZP_07195975.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 185-1] gi|306814652|ref|ZP_07448814.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli NC101] gi|307311198|ref|ZP_07590842.1| ribonucleotide reductase [Escherichia coli W] gi|309793115|ref|ZP_07687543.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|331647890|ref|ZP_08348982.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M605] gi|331668939|ref|ZP_08369787.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA271] gi|331678186|ref|ZP_08378861.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H591] gi|26109028|gb|AAN81231.1|AE016763_190 Ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli CFT073] gi|73856232|gb|AAZ88939.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella sonnei Ss046] gi|91073102|gb|ABE07983.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli UTI89] gi|110344035|gb|ABG70272.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli 536] gi|157079522|gb|ABV19230.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E24377A] gi|190903473|gb|EDV63192.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B7A] gi|190909794|gb|EDV69379.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli F11] gi|194418416|gb|EDX34505.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella dysenteriae 1012] gi|209912946|dbj|BAG78020.1| ribonucleoside diphosphate reductase beta subunit [Escherichia coli SE11] gi|215265524|emb|CAS09927.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli O127:H6 str. E2348/69] gi|218352573|emb|CAU98352.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli 55989] gi|218361566|emb|CAQ99157.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli IAI1] gi|218365921|emb|CAR03663.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli S88] gi|218370692|emb|CAR18503.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli IAI39] gi|222033996|emb|CAP76737.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli LF82] gi|227835643|gb|EEJ46109.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 83972] gi|242377869|emb|CAQ32637.1| nrdB, subunit of B2 protein and GDP reductase [multifunctional] [Escherichia coli BL21(DE3)] gi|253323886|gb|ACT28488.1| ribonucleotide reductase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974147|gb|ACT39818.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli B str. REL606] gi|253978314|gb|ACT43984.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli BL21(DE3)] gi|257754934|dbj|BAI26436.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O26:H11 str. 11368] gi|257759978|dbj|BAI31475.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O103:H2 str. 12009] gi|257765321|dbj|BAI36816.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia coli O111:H- str. 11128] gi|281179326|dbj|BAI55656.1| ribonucleoside diphosphate reductase beta subunit [Escherichia coli SE15] gi|291323408|gb|EFE62836.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|294490302|gb|ADE89058.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli IHE3034] gi|300299180|gb|EFJ55565.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 185-1] gi|300307615|gb|EFJ62135.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 200-1] gi|300408603|gb|EFJ92141.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 45-1] gi|300525239|gb|EFK46308.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 119-7] gi|300529309|gb|EFK50371.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 107-1] gi|305852046|gb|EFM52498.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli NC101] gi|306908704|gb|EFN39201.1| ribonucleotide reductase [Escherichia coli W] gi|307554301|gb|ADN47076.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Escherichia coli ABU 83972] gi|308123401|gb|EFO60663.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|312946856|gb|ADR27683.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O83:H1 str. NRG 857C] gi|313651060|gb|EFS15459.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri 2a str. 2457T] gi|315061535|gb|ADT75862.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like [Escherichia coli W] gi|315292180|gb|EFU51532.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 153-1] gi|320178793|gb|EFW53756.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii ATCC 9905] gi|320196104|gb|EFW70728.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli WV_060327] gi|320199830|gb|EFW74419.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli EC4100B] gi|323156512|gb|EFZ42666.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli EPECa14] gi|323161696|gb|EFZ47579.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli E128010] gi|323168602|gb|EFZ54282.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella sonnei 53G] gi|323171914|gb|EFZ57558.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli LT-68] gi|323176838|gb|EFZ62428.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 1180] gi|323184146|gb|EFZ69523.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli 1357] gi|323188037|gb|EFZ73332.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia coli RN587/1] gi|323377884|gb|ADX50152.1| Ribonucleoside-diphosphate reductase [Escherichia coli KO11] gi|324006608|gb|EGB75827.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 57-2] gi|324013118|gb|EGB82337.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 60-1] gi|324117882|gb|EGC11781.1| ribonucleotide reductase [Escherichia coli E1167] gi|325496725|gb|EGC94584.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia fergusonii ECD227] gi|330912066|gb|EGH40576.1| ribonucleotide reductase of class 1a (aerobic), beta subunit [Escherichia coli AA86] gi|331043614|gb|EGI15752.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M605] gi|331064133|gb|EGI36044.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA271] gi|331074646|gb|EGI45966.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H591] gi|332096162|gb|EGJ01165.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella dysenteriae 155-74] gi|332754883|gb|EGJ85248.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri 4343-70] gi|332755286|gb|EGJ85650.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri K-671] gi|332756386|gb|EGJ86737.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri 2747-71] gi|332766056|gb|EGJ96266.1| nrdB [Shigella flexneri 2930-71] gi|333001382|gb|EGK20950.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri VA-6] gi|333002603|gb|EGK22163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri K-272] gi|333016476|gb|EGK35807.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri K-304] gi|333016745|gb|EGK36073.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella flexneri K-227] Length = 376 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 AE+ D Sbjct: 363 DAEVDTD 369 >gi|331658316|ref|ZP_08359278.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA206] gi|307626227|gb|ADN70531.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UM146] gi|331056564|gb|EGI28573.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA206] Length = 389 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 19 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 77 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 78 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 135 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 136 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 195 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 196 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 255 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 256 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 315 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 316 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 375 Query: 346 GAELKWD 352 AE+ D Sbjct: 376 DAEVDTD 382 >gi|146312444|ref|YP_001177518.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp. 638] gi|145319320|gb|ABP61467.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Enterobacter sp. 638] Length = 376 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 82/367 (22%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISHYYDELIEMTSYWHLLGEGTHSVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + A L E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVLAALQEKEWAEYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GLE FK NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYIEYITNIRMQAVGLELPFKTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEVNTD 369 >gi|317506846|ref|ZP_07964618.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974] gi|316254774|gb|EFV14072.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974] Length = 332 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 63/356 (17%), Positives = 137/356 (38%), Gaps = 35/356 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 + P++ + D +++ A + N+++ K W+ N W+P +VP+ +D+ Sbjct: 1 MHPLETESSQKAPDKVKLVRA-INWNRVVDEKDSEVWD---RLVGNFWLPEKVPLSNDIQ 56 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W + L + E+ + R +++ +++ P AF E+V Sbjct: 57 SWHT---LNEHEQQLTMRVFTGLTLLDTIQGAVGAVSLIPDALTPHEEAVYTNIAFMESV 113 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++ I ++L E F E P++ KA L+ + + Sbjct: 114 HAKSYSSIFSTLSNTPEIDEAFRWSEENPNLQRKAAIVLERYR---------------GD 158 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 V + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 159 DPLKRKVASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQR 218 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + +E + + ++L + E+ Y + + ++++++ AN+ Sbjct: 219 GLAASTEQRREELKDFTFSLLFDLYENEVEYTQDLYDPVGL---TEDVKKFLRYNANKAL 275 Query: 305 HQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + +G E LF E NP + + + +FF + Y G + WD Sbjct: 276 NNLGYEGLFPKDETSVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 331 >gi|152971181|ref|YP_001336290.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206577425|ref|YP_002237361.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] gi|262043285|ref|ZP_06016416.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934289|ref|YP_003438348.1| ribonucleotide reductase [Klebsiella variicola At-22] gi|330000612|ref|ZP_08303755.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] gi|150956030|gb|ABR78060.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206566483|gb|ACI08259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] gi|259039384|gb|EEW40524.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288889018|gb|ADC57336.1| ribonucleotide reductase [Klebsiella variicola At-22] gi|328537954|gb|EGF64133.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] Length = 376 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 152/376 (40%), Gaps = 41/376 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N+ L P+ G+ VNV AR D KY + + W P EV + Sbjct: 10 KNDQLLEPMFFGQP-VNV-------ARYDQQ-----KYDIFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++ L + E+ + NL + +S+ + +A+ +S PE ++ A Sbjct: 57 SRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y +L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPATVFDDIVTNEQIQKRAEGISHYYDSLIEMTSYWHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 174 GTHTVNGKTVTVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIR 233 Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ ++P + +E +Q+ + A E +A Sbjct: 234 LIARDEALHLTGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFR 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339 G +GLN QY+++I N R +GL+ F+ NP PW++ + + E Sbjct: 294 DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVE 353 Query: 340 VTEY---QQGAELKWD 352 V+ Y Q +E+ D Sbjct: 354 VSSYLVGQIDSEVDAD 369 >gi|118465359|ref|YP_883075.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium 104] gi|118166646|gb|ABK67543.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium avium 104] Length = 324 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +DL W + LT E+ M R Sbjct: 15 NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + + F Sbjct: 69 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA +QY + V + E FY+GF Sbjct: 129 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAKRQELKDYTYELLFE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323 >gi|16761204|ref|NP_456821.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141101|ref|NP_804443.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|25285831|pir||AD0791 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503503|emb|CAD07510.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Typhi] gi|29136727|gb|AAO68292.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 376 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPAIVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEVDTD 369 >gi|168229641|ref|ZP_02654699.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471700|ref|ZP_03077684.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|238913487|ref|ZP_04657324.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194458064|gb|EDX46903.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335835|gb|EDZ22599.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 376 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNSKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEVDTD 369 >gi|15842613|ref|NP_337650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CDC1551] gi|31794226|ref|NP_856719.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis AF2122/97] gi|57117051|ref|YP_177921.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Rv] gi|121638932|ref|YP_979156.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662901|ref|YP_001284424.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|148824239|ref|YP_001288993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis F11] gi|167969649|ref|ZP_02551926.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|215405040|ref|ZP_03417221.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|215412903|ref|ZP_03421607.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|215428496|ref|ZP_03426415.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T92] gi|215432000|ref|ZP_03429919.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|215447324|ref|ZP_03434076.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|218754813|ref|ZP_03533609.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis GM 1503] gi|219559083|ref|ZP_03538159.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T17] gi|224991424|ref|YP_002646113.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253797854|ref|YP_003030855.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 1435] gi|254233678|ref|ZP_04927003.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis C] gi|254365678|ref|ZP_04981723.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis str. Haarlem] gi|254552123|ref|ZP_05142570.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188080|ref|ZP_05765554.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CPHL_A] gi|260202186|ref|ZP_05769677.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T46] gi|260206381|ref|ZP_05773872.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis K85] gi|289444611|ref|ZP_06434355.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289448726|ref|ZP_06438470.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CPHL_A] gi|289553161|ref|ZP_06442371.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 605] gi|289571250|ref|ZP_06451477.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T17] gi|289575758|ref|ZP_06455985.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis K85] gi|289746856|ref|ZP_06506234.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289751720|ref|ZP_06511098.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T92] gi|289755164|ref|ZP_06514542.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289759173|ref|ZP_06518551.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|289763226|ref|ZP_06522604.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis GM 1503] gi|294993448|ref|ZP_06799139.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 210] gi|297635679|ref|ZP_06953459.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN 4207] gi|297732677|ref|ZP_06961795.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN R506] gi|298526518|ref|ZP_07013927.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|306777354|ref|ZP_07415691.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu001] gi|306781258|ref|ZP_07419595.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu002] gi|306785899|ref|ZP_07424221.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu003] gi|306790253|ref|ZP_07428575.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu004] gi|306794748|ref|ZP_07433050.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu005] gi|306798990|ref|ZP_07437292.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu006] gi|306804833|ref|ZP_07441501.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu008] gi|306809026|ref|ZP_07445694.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu007] gi|306969126|ref|ZP_07481787.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu009] gi|306973470|ref|ZP_07486131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu010] gi|307081181|ref|ZP_07490351.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu011] gi|307085780|ref|ZP_07494893.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu012] gi|313660009|ref|ZP_07816889.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN V2475] gi|81671996|sp|Q50549|RIR2B_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta nrdF2; AltName: Full=Ribonucleoside-diphosphate reductase nrdF2; AltName: Full=Ribonucleotide reductase R2-2 small subunit gi|1395209|gb|AAB81406.1| ribonucleotide reductase R2-2 small subunit [Mycobacterium tuberculosis] gi|13882928|gb|AAK47464.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Mycobacterium tuberculosis CDC1551] gi|31619821|emb|CAD96761.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium bovis AF2122/97] gi|41352780|emb|CAE55544.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|121494580|emb|CAL73061.1| Ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599207|gb|EAY58311.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis C] gi|134151191|gb|EBA43236.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis str. Haarlem] gi|148507053|gb|ABQ74862.1| ribonucleoside-diphosphate reductase subunit beta NrdF2 [Mycobacterium tuberculosis H37Ra] gi|148722766|gb|ABR07391.1| ribonucleoside-diphosphate reductase beta subunit nrdF2 [Mycobacterium tuberculosis F11] gi|224774539|dbj|BAH27345.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253319357|gb|ACT23960.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 1435] gi|289417530|gb|EFD14770.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289421684|gb|EFD18885.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CPHL_A] gi|289437793|gb|EFD20286.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 605] gi|289540189|gb|EFD44767.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis K85] gi|289545004|gb|EFD48652.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T17] gi|289687384|gb|EFD54872.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289692307|gb|EFD59736.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis T92] gi|289695751|gb|EFD63180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289710732|gb|EFD74748.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2 [Mycobacterium tuberculosis GM 1503] gi|289714737|gb|EFD78749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|298496312|gb|EFI31606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|308214246|gb|EFO73645.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu001] gi|308325901|gb|EFP14752.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu002] gi|308329423|gb|EFP18274.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu003] gi|308333268|gb|EFP22119.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu004] gi|308336923|gb|EFP25774.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu005] gi|308340739|gb|EFP29590.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu006] gi|308344606|gb|EFP33457.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu007] gi|308348554|gb|EFP37405.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu008] gi|308353280|gb|EFP42131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu009] gi|308357113|gb|EFP45964.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu010] gi|308361065|gb|EFP49916.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu011] gi|308364701|gb|EFP53552.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis SUMu012] gi|323718280|gb|EGB27458.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis CDC1551A] gi|326902729|gb|EGE49662.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis W-148] gi|328457631|gb|AEB03054.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Mycobacterium tuberculosis KZN 4207] Length = 324 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 128/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P L AF E+VH+ ++ I ++L + + F Sbjct: 69 TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA LQY + D+ + + + E FY+GF Sbjct: 129 WSEENRNLQRKAEIVLQYYR-------------GDEPLKRKV--ASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDDDWD 323 >gi|256832970|ref|YP_003161697.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM 20603] gi|256686501|gb|ACV09394.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM 20603] Length = 325 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 16 NWNRIEDDKDLEVWD---RLVGNFWVPEKVPVSNDIQSWAT---LTPQEQELTTRVFTGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P L AF E+VH+ ++ I ++L E F Sbjct: 70 TLLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSTIFSTLISTPEIDEAFR 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P + KA L+Y + + V + E FY+GF Sbjct: 130 WSEENPHLQRKAEIILEYYR---------------GDDPLKRKVASTLLESFLFYSGFYL 174 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L+E Sbjct: 175 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEAVTPERREELKAYTFDLLYE 234 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+AY + ++++++ AN+ +G E LF E NP + Sbjct: 235 LYDNEVAYTESLYDGVGL---TEDVKKFLRYNANKALLNLGYEALFPKDETDVNPAILSA 291 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324 >gi|190896570|gb|ACE96798.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896582|gb|ACE96804.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + E R + Q E +HS + ++ + D E F+ VP + Sbjct: 1 AGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEEQVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNAA-NPFDWM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|315283233|ref|ZP_07871471.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria marthii FSL S4-120] gi|313613124|gb|EFR87028.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria marthii FSL S4-120] Length = 349 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 18/325 (5%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L+++E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PNLSEEEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G A+ +S I I ++++P +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIGQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + R P+I + ++ + + E L + + EG+ FY+ Sbjct: 144 RVFELARTHPTIIKRNEPIMEAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA +L R NKM G + +I RDE H F +VI I ENP L T E + + Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVEYTHE 255 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322 A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W Sbjct: 256 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314 Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345 + D + + +FFE R + Y++ Sbjct: 315 IKAYADNFTETKTDFFEMRNSSYKK 339 >gi|6321619|ref|NP_011696.1| Rnr4p [Saccharomyces cerevisiae S288c] gi|1710402|sp|P49723|RIR4_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 2; AltName: Full=Ribonucleotide reductase R2 subunit 2; AltName: Full=Ribonucleotide reductase small subunit 2 gi|15826570|pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer gi|52695527|pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer From Saccharomyces Cerevisiae gi|52695528|pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer From Saccharomyces Cerevisiae gi|915546|gb|AAB72236.1| Rnr4p [Saccharomyces cerevisiae] gi|1323319|emb|CAA97206.1| RNR4 [Saccharomyces cerevisiae] gi|285812375|tpg|DAA08275.1| TPA: Rnr4p [Saccharomyces cerevisiae S288c] gi|323304781|gb|EGA58540.1| Rnr4p [Saccharomyces cerevisiae FostersB] gi|323308943|gb|EGA62174.1| Rnr4p [Saccharomyces cerevisiae FostersO] Length = 345 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 74/342 (21%), Positives = 139/342 (40%), Gaps = 27/342 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + + + D+ +L S + P+KY W Y + W E+ + D ++ Sbjct: 14 ERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ- 72 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 LTDD++ I L SS++LV ++ L NPE + + Q E ++S Sbjct: 73 --KLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEV 130 Query: 131 FQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 + ++ + D + F +P + KA + ++ D + Sbjct: 131 YSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWI-------------SNDDSLYAE 177 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++ +A + L M G+A + I RD + +F + Sbjct: 178 RLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF------ 231 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 HL TK + ++ EA +E Y ++P G++ S Y++F+A+ G Sbjct: 232 -AHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFG 290 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 E + NPF +M +V K FFE +V++YQ+ +++ Sbjct: 291 NEKYYNAV-NPFEFMEDVATAGKTT-FFEKKVSDYQKASDMS 330 >gi|118469232|ref|YP_886661.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium smegmatis str. MC2 155] gi|118469934|ref|YP_885432.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium smegmatis str. MC2 155] gi|118170519|gb|ABK71415.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium smegmatis str. MC2 155] gi|118171221|gb|ABK72117.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium smegmatis str. MC2 155] Length = 324 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 129/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W N W+P +VP+ +D+ W + LTD+E+ + R Sbjct: 15 NWNRLQDEKDAEVWH---RLTGNFWLPEKVPVSNDIQSWHT---LTDNEKQLTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P L AF E+VH+ ++ I ++L + + F Sbjct: 69 TLLDTIQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSNIFSTLCSTAEIDDAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA +QY + D+ + + + E FY+GF Sbjct: 129 WSEENPNLQRKAAIVMQYYR-------------GDEPLKRKV--ASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDEEKKQELKDYTYELLFE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + ++++++ AN+ +G E LF E NP + Sbjct: 234 LYDNEVEYTQDLYDSVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LAPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323 >gi|296171158|ref|ZP_06852606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894294|gb|EFG74049.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 324 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +DL W + LT E+ + R Sbjct: 15 NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDLPSWAT---LTSGEKQLTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + + F Sbjct: 69 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA +QY + V + E FY+GF Sbjct: 129 WSEENPNLQRKAEIVMQYY---------------KGDEPLKRKVASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDEAKRAELKDYTYELLFE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323 >gi|308187586|ref|YP_003931717.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans C9-1] gi|308058096|gb|ADO10268.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans C9-1] Length = 376 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTGTKDAD--- 182 + +II ++ D +F+ I A+A +Y L GT + Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDLIEMTNYWHQLGEGTHQVNDKQ 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VVVSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ K E +++ + +A L E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 303 DILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340 >gi|304398198|ref|ZP_07380072.1| ribonucleotide reductase [Pantoea sp. aB] gi|304354064|gb|EFM18437.1| ribonucleotide reductase [Pantoea sp. aB] Length = 376 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTGTKDAD--- 182 + +II ++ D +F+ I A+A +Y L GT + Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDLIEMTNYWHQLGEGTHKVNDKQ 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VVVSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ K E +++ + +A L E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 303 DILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340 >gi|190896524|gb|ACE96775.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896534|gb|ACE96780.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|315930891|gb|EFV09876.1| ribonucleotide reductase, small chain family protein [Campylobacter jejuni subsp. jejuni 305] Length = 305 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 79/311 (25%), Positives = 139/311 (44%), Gaps = 12/311 (3%) Query: 10 IQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 I + D+++ + + KY WA + + N W P EV D + Sbjct: 6 IYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDALDY 65 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + LT E+ M S +S NN+ I +++ PE L RQA+EEA HS Sbjct: 66 RC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEANHS 123 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 ++ ++ ++ + ++ M + ++ K ++ + L+ D D L Sbjct: 124 KSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNKLLL 175 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN ++ E Sbjct: 176 AMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSVRKE 235 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 P L+ E K M +A LEI + +G E+Y+ ++ ++R I Sbjct: 236 RPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLSAIN 295 Query: 309 LEPLFKYTENP 319 L+ L+ ++P Sbjct: 296 LDKLYN-AKHP 305 >gi|68171256|ref|ZP_00544659.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str. Sapulpa] gi|67999338|gb|EAM85984.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str. Sapulpa] Length = 294 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 79/300 (26%), Positives = 143/300 (47%), Gaps = 14/300 (4%) Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 +P EVP+ DD+ WK+ L++ E+ ++ + FF ++ V N + E Sbjct: 1 LPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQADIEVNNCYMKHYSNIFKPTEVC 58 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 L + E +H + Y++ ++G+ E E + + + + K ++ + F Sbjct: 59 MMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEVMKKKYDYMQR---------F 108 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 K+ + + L VF EG+ + FA +L+ R KM G+ + + +RDE+LH Sbjct: 109 EECRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRFGKMKGMGQIIAWSVRDETLH 168 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCE 293 I + N EN +W +Q+ LE + + G V L++ + Sbjct: 169 TESIIRLFNTFIQENYEIWDDSLKQELYEACRIIVSLEDEFINLAFACGDVEGLSSKEVK 228 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352 +Y+++IANRR Q+ LEP++ +NP W+ E+++ + NFFE RVTEY + A E W+ Sbjct: 229 EYIRYIANRRLLQLNLEPIYDTNKNPLLWLDEILNGVEHTNFFENRVTEYARAATEGTWE 288 >gi|329298015|ref|ZP_08255351.1| ribonucleotide-diphosphate reductase subunit beta [Plautia stali symbiont] Length = 376 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKD----- 180 + +II ++ D ++F+ I A+A +Y L + GT Sbjct: 123 YTHIIRNIVNDPSQVFDDIVTNEQILARAQDISKYYDDLIEMTNYWHLLGEGTHQVAGKS 182 Query: 181 ------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 A ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVNLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ K E + + + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLMRTGEDDPEMKEIAAECRDECFDLFKKAAEQEKEWAEYLFSGGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 303 DILCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340 >gi|326560494|gb|EGE10876.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 7169] gi|326570427|gb|EGE20467.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis BC8] gi|326575699|gb|EGE25622.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis CO72] gi|326577166|gb|EGE27060.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis O35E] Length = 376 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 139/350 (39%), Gaps = 37/350 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ VNV +R D K+ + + W P E+ + Sbjct: 10 KNNVLLEPMFFGQP-VNV-------SRYDQQ-----KHPIFEQLIEKQLSFFWRPEEIDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + L+ E+ + NL + +S+ + + + +S PE ++ + Sbjct: 57 SKDRIDFA---ELSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL------------ 169 F E +HS ++ +II ++ D ++F + I +A+ +Y L Sbjct: 114 FSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGE 173 Query: 170 ----SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 T ++ L V V E + FY FA + M G A+ + Sbjct: 174 GVYQIDGQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIK 233 Query: 226 YIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHLN +IN ++ + Q+++ + A E A+A+ Sbjct: 234 MIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFK 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 G +GLN QY++FI N R IGL +F+ NP PW++ + Sbjct: 294 DGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSD 343 >gi|323337480|gb|EGA78728.1| Rnr4p [Saccharomyces cerevisiae Vin13] Length = 328 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 73/332 (21%), Positives = 135/332 (40%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L S + P+KY W Y + W E+ + D ++ LTDD++ Sbjct: 7 DEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ---KLTDDQKT 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L SS++LV ++ L NPE + + Q E ++S + ++ + Sbjct: 64 YIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFK 123 Query: 141 DEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 D + F +P + K + ++ D + V + EG Sbjct: 124 DPKNIPLFKEIANLPEVKHKTAFIERWI-------------SNDDSLYAERLVAFAAKEG 170 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++ +A + L M G+A + I RD + +F + HL TK Sbjct: 171 IFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF-------AHLRTKPNP 223 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + ++ EA +E Y ++P G++ S Y++F+A+ G E + N Sbjct: 224 KIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV-N 282 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 PF +M +V K FFE +V++YQ+ +++ Sbjct: 283 PFEFMEDVATAGKTT-FFEKKVSDYQKASDMS 313 >gi|226305840|ref|YP_002765800.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus erythropolis PR4] gi|229493405|ref|ZP_04387194.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus erythropolis SK121] gi|226184957|dbj|BAH33061.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus erythropolis PR4] gi|229319721|gb|EEN85553.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus erythropolis SK121] Length = 321 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 126/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ +N W+P +VP+ +D+ W + LT E+ + R Sbjct: 12 NWNRVQDEKDAEVWD---RLVSNFWLPEKVPVSNDIPSWGT---LTAQEQQLTMRVFTGL 65 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L D + F Sbjct: 66 TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTPDIDDAFR 125 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA L Y E V + E FY+GF Sbjct: 126 WSEENPNLQRKAQIVLDYYN---------------GESPLKRKVASTLLESFLFYSGFYL 170 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 171 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEQLTEAEREELKNYTFELLFE 230 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + ++++++ AN+ + +G E LF E NP + Sbjct: 231 LYENEVDYTQDLYDGVGL---TEDVKKFLRYNANKALNNLGYEGLFPKDETDVNPAILSA 287 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 288 LSPNADENHDFFSGSGSSYVIGKAVNTEDDDWD 320 >gi|254523600|ref|ZP_05135655.1| ribonucleoside-diphosphate reductase, beta subunit [Stenotrophomonas sp. SKA14] gi|219721191|gb|EED39716.1| ribonucleoside-diphosphate reductase, beta subunit [Stenotrophomonas sp. SKA14] Length = 346 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 148/348 (42%), Gaps = 19/348 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N R+ + + Y + Y N W+P EV M+ Sbjct: 2 ATPLDRIKILEPRHPNRSTGIINGRTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + L+ E+ +G A+ +S I + ++++P Sbjct: 62 ADARQY---GELSGREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ ++ +F + R P+I + + ++ Sbjct: 118 QEVIHNESYSYVLASITDLPNQNRVFELARTHPTIIKRNAPIMGAYDD--------FMRE 169 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA ++ R N+M G + +I RDE H F + Sbjct: 170 KTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQNRMTGTGKIISFINRDELAHTKFISE 229 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I ENP L T E A LE ++ E + G G++ +Y+++ A Sbjct: 230 LIRAIIGENPELQTNELTAYVHQAFEHAIELETQWSSEVL-DGIDGIDVEEMTRYVKYRA 288 Query: 301 NRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 N+ +G+E L+ T+N PW+ D + + +FFE R Y++ Sbjct: 289 NKMAGMLGIERLYSDTTDNVMPWIKAYADNFTETKTDFFEMRNASYKK 336 >gi|296113118|ref|YP_003627056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Moraxella catarrhalis RH4] gi|295920812|gb|ADG61163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Moraxella catarrhalis RH4] Length = 380 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 139/350 (39%), Gaps = 37/350 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ VNV +R D K+ + + W P E+ + Sbjct: 14 KNNVLLEPMFFGQP-VNV-------SRYDQQ-----KHPIFEQLIEKQLSFFWRPEEIDV 60 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + L+ E+ + NL + +S+ + + + +S PE ++ + Sbjct: 61 SKDRIDFA---ELSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWS 117 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL------------ 169 F E +HS ++ +II ++ D ++F + I +A+ +Y L Sbjct: 118 FSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGE 177 Query: 170 ----SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 T ++ L V V E + FY FA + M G A+ + Sbjct: 178 GVYQIDGQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIK 237 Query: 226 YIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHLN +IN ++ + Q+++ + A E A+A+ Sbjct: 238 MIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFK 297 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 G +GLN QY++FI N R IGL +F+ NP PW++ + Sbjct: 298 DGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSD 347 >gi|50120137|ref|YP_049304.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium atrosepticum SCRI1043] gi|49610663|emb|CAG74108.1| ribonucleoside-diphosphate reductase 1 beta chain [Pectobacterium atrosepticum SCRI1043] Length = 376 Score = 232 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y +L + GT + Sbjct: 123 YTHIIRNIVNDPSLVFDDIVANEEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVNLHALKKQLYVCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E QQ+ + A E +A G +GLN Sbjct: 243 LTGTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL F+ NP PW++ + + E V+ Y Q Sbjct: 303 DILCQYVEYITNIRMQGVGLSLPFQTRTNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQI 362 Query: 346 GAELKWD 352 +E+ D Sbjct: 363 DSEISDD 369 >gi|163748931|ref|ZP_02156182.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella benthica KT99] gi|161331307|gb|EDQ02195.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella benthica KT99] Length = 376 Score = 232 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 86/349 (24%), Positives = 143/349 (40%), Gaps = 37/349 (10%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NN L P+ G+ VNV AR DV KY + + W P EV + Sbjct: 11 NNACLEPMFMGQS-VNV-------ARYDVQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + L D E+ + NL + +S+ + +A +S PE ++ +F Sbjct: 58 KDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTG 177 E +HS ++ +II ++ D +F+ + I +A QY L + G Sbjct: 115 SETIHSRSYTHIIRNIVNDPSIIFDDIVKNEEILKRATDIAQYYDDLILLTQAFHLHGEG 174 Query: 178 TKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 T + ++ L V V E + FY FA + N M G A+ + Sbjct: 175 THIVNGKELLVTQRTIKKSLYLCMVSVNVLEAIRFYVSFACSFAFAERNVMEGNAKIIRL 234 Query: 227 IMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I RDE+LHLN ++ ++ ++P + +E +Q + + +A E +A Sbjct: 235 IARDEALHLNSTQHILKIMRAGVDDPEMGEIAEECEQLAYDIFVKAAEQEKEWAQYLFKD 294 Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 G +GLN QY+++I N R + L P + NP PWM ++ Sbjct: 295 GSMIGLNEAILCQYVEYITNERMKSVNLTPHYDEITNPLPWMKNWLESD 343 >gi|326560111|gb|EGE10501.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 46P47B1] gi|326564174|gb|EGE14410.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 12P80B1] gi|326573404|gb|EGE23372.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 101P30B1] Length = 376 Score = 232 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 139/350 (39%), Gaps = 37/350 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ VNV +R D K+ + + W P E+ + Sbjct: 10 KNNVLLEPMFFGQP-VNV-------SRYDQQ-----KHPIFEQLIEKQLSFFWRPEEIDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + L+ E+ + NL + +S+ + + + +S PE ++ + Sbjct: 57 SKDRIDFA---ELSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL------------ 169 F E +HS ++ +II ++ D ++F + I +A+ +Y L Sbjct: 114 FSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGE 173 Query: 170 ----SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 T ++ L V V E + FY FA + M G A+ + Sbjct: 174 GIYQIDGQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIK 233 Query: 226 YIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHLN +IN ++ + Q+++ + A E A+A+ Sbjct: 234 MIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFK 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 G +GLN QY++FI N R IGL +F+ NP PW++ + Sbjct: 294 DGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSD 343 >gi|157879968|pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein R2 F208y From Escherichia Coli Ribonucleotide Reductase And Crystal Structure Of The Dopa-208 Protein gi|157879969|pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein R2 F208y From Escherichia Coli Ribonucleotide Reductase And Crystal Structure Of The Dopa-208 Protein Length = 375 Score = 232 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 137/340 (40%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 32 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 89 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 148 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + GT + ++ L + E + Sbjct: 149 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRX 208 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + +E Sbjct: 209 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEEC 268 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q+ + +A E +A G +GLN QY+++I N R +GL+ F Sbjct: 269 KQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTR 328 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PW++ + + E V+ Y Q +E+ D Sbjct: 329 SNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTD 368 >gi|54026269|ref|YP_120511.1| ribonucleotide-diphosphate reductase subunit beta [Nocardia farcinica IFM 10152] gi|54017777|dbj|BAD59147.1| putative ribonucleoside-diphosphate reductase beta subunit [Nocardia farcinica IFM 10152] Length = 320 Score = 232 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W + LT E+ + R Sbjct: 11 NWNRVPDEKDAEVW---ARLTGNFWLPEKVPVSNDIPSWNT---LTPHEQQLTMRVFTGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ P L AF E+VH+ ++ I ++L + E F Sbjct: 65 TLLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFR 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y Q + V + E FY+GF Sbjct: 125 WSEENRNLQRKAEIVLDYYQ---------------GDDPLKRKVASTLLESFLFYSGFYL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L+E Sbjct: 170 PMHWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLEQVSEAEREELKNYTFELLYE 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + + ++++ AN+ +G E LF E NP + Sbjct: 230 LYENEVEYTQDLYDEVGL---TEDVKTFLRYNANKALMNLGYEGLFPADETRVNPAILSA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 319 >gi|261867684|ref|YP_003255606.1| ribonucleotide-diphosphate reductase subunit beta [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413016|gb|ACX82387.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 376 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + GT D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKE 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CVVSLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + ++P + +E +Q++ + A E +A G +GLN Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKDWADYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F+ NP PW++ + Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340 >gi|254361270|ref|ZP_04977413.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica PHL213] gi|153092766|gb|EDN73809.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica PHL213] Length = 376 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 131/338 (38%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSQDRIDYAQ 65 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 66 ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + G+ D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYSLYGEGSYQVDGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + N +E +Q++ + A E A+A G +GLN Sbjct: 243 LTGTQHILNIMAYGNDDPEMAEIARECRQEAYELFLSAAEQEKAWAEYLFKDGSMIGLNR 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL FK NP PW++ + Sbjct: 303 DILVQYIEYITNIRMQAVGLPLPFKARSNPIPWINAWL 340 >gi|238761950|ref|ZP_04622923.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia kristensenii ATCC 33638] gi|238699678|gb|EEP92422.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia kristensenii ATCC 33638] Length = 400 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 146/376 (38%), Gaps = 41/376 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ +V + K+ + + W P E+ + Sbjct: 34 KNNQLLEPMFFGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 80 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + N L D E+ + NL + +S+ + +A+ +S PE ++ + Sbjct: 81 SRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWS 137 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 138 FSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISGYYDDLIEMTSYYHLLGE 197 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 198 GTHQVNGKTVVVNLRELKKQLYLCVMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 257 Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL +IN ++ ++P + +E QQ+ + A E +A Sbjct: 258 MIARDEALHLTGTQHIINLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFR 317 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339 G +GLN QY+++I N R +GL F NP PW++ + + E Sbjct: 318 DGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTRTNPIPWINSWLVSDNVQVAPQEVE 377 Query: 340 VTEY---QQGAELKWD 352 V+ Y Q +E+ D Sbjct: 378 VSSYLVGQIDSEISAD 393 >gi|261493906|ref|ZP_05990416.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495801|ref|ZP_05992236.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308535|gb|EEY09803.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310439|gb|EEY11632.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 376 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSQDRIDYAQ 65 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 66 ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + G+ D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYSLYGEGSYQVDGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + ++P + +E +Q++ + A E A+A G +GLN Sbjct: 243 LTGTQHILNIMTYGNDDPEMAEIARECRQEAYELFLSAAEQEKAWAEYLFKDGSMIGLNR 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL FK NP PW++ + Sbjct: 303 DILVQYIEYITNIRMQAVGLPLPFKARSNPIPWINAWL 340 >gi|326565416|gb|EGE15593.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella catarrhalis 103P14B1] Length = 376 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 139/350 (39%), Gaps = 37/350 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ VNV +R D K+ + + W P E+ + Sbjct: 10 KNNVLLEPMFFGQP-VNV-------SRYDQQ-----KHPIFEQLIEKQLSFFWRPEEIDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + L+ E+ + NL + +S+ + + + +S PE ++ + Sbjct: 57 SKDRIDFA---ELSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL------------ 169 F E +HS ++ +II ++ D ++F + I +A+ +Y L Sbjct: 114 FSETIHSRSYTHIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGE 173 Query: 170 ----SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 T ++ L V V E + FY FA + M G A+ + Sbjct: 174 GIYQIDEQSVEVTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIK 233 Query: 226 YIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHLN +IN ++ + Q+++ + A E A+A+ Sbjct: 234 MIARDEALHLNGTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFK 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 G +GLN QY++FI N R IGL +F+ NP PW++ + Sbjct: 294 DGSMIGLNRDILCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSD 343 >gi|3891582|pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli gi|3891583|pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli Length = 340 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 72/338 (21%), Positives = 136/338 (40%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 64 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 122 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339 >gi|251792451|ref|YP_003007177.1| ribonucleotide-diphosphate reductase subunit beta [Aggregatibacter aphrophilus NJ8700] gi|315634378|ref|ZP_07889665.1| ribonucleotide-diphosphate reductase beta subunit [Aggregatibacter segnis ATCC 33393] gi|247533844|gb|ACS97090.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter aphrophilus NJ8700] gi|315476968|gb|EFU67713.1| ribonucleotide-diphosphate reductase beta subunit [Aggregatibacter segnis ATCC 33393] Length = 376 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + GT D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKE 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CVVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + ++P + +E +Q++ + A E +A G +GLN Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKDWADYLFKDGSMIGLNR 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F+ NP PW++ + Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340 >gi|240169547|ref|ZP_04748206.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium kansasii ATCC 12478] Length = 320 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 63/325 (19%), Positives = 128/325 (39%), Gaps = 29/325 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 11 NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTANEKQLTMRVFTGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P L AF E+VH+ ++ I ++L + + F Sbjct: 65 TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA LQY + D+ + + + E FY+GF Sbjct: 125 WSEENPNLQRKAEIVLQYYR-------------GDEPLKRKV--ASTLLESFLFYSGFYL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + E + + +L E Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDEVKRAELKDYTYELLFE 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 230 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349 + + +FF + Y G + Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAV 311 >gi|299822182|ref|ZP_07054068.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi DSM 20601] gi|299815711|gb|EFI82949.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi DSM 20601] Length = 349 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 78/322 (24%), Positives = 142/322 (44%), Gaps = 18/322 (5%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S + + Y + Y N+W+P EV M+ D + L+++ER +G Sbjct: 31 SGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKGDAKQY---PELSEEERYAYDAIIGL 87 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELF 146 A+ +S I + ++++P A +E +H+ ++ Y++ S+ ++ +F Sbjct: 88 LATLDSPQTRFIY-NVAEYVTDPAVHANAAIIAQQEVIHNESYSYVLASITNLQNQNRIF 146 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 + R P+I + + + E L + + EG+ FY+GFA Sbjct: 147 ELARTHPTIIKRNQPIMDAYDD--------FLEHKTGETLVKSLIQSSILEGINFYSGFA 198 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 +L R NKM G + +I RDE H F +VI I ENP L T E + Sbjct: 199 YFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVAYTHDAFR 258 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSE 325 A LE ++ E M +G G++ Y+++ AN+ +G+ L+ ++EN W+ Sbjct: 259 HAVELETIWSEEVM-EGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSENTMTWIKA 317 Query: 326 VID--LKKEKNFFETRVTEYQQ 345 D + + +FFE R + Y++ Sbjct: 318 YADNFTETKTDFFEMRNSSYKK 339 >gi|260772919|ref|ZP_05881835.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio metschnikovii CIP 69.14] gi|260612058|gb|EEX37261.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio metschnikovii CIP 69.14] Length = 377 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 74/315 (23%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIINDPAVVFDDIVENEHILK 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + F G + ++ L + E + F Sbjct: 150 RAKDIAHYYDDLIQATNDYHRFGEGKHQLNDETINVSLTELKKKLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEF 257 Y FA + M G A+ + I RDE+LHL +IN ++ +E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINLLRNGLDDFTFLQIAEEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315 +Q+ + EA E +A G +GLN QY+++I N R +GLEP + Sbjct: 270 KQQCFDLFKEAAEQEKEWAAYLFKDGSMIGLNRDILCQYVEYITNIRMQAVGLEPAYPKA 329 Query: 316 TENPFPWMSEVIDLK 330 T NP PW++ + Sbjct: 330 TSNPIPWINAWLSSD 344 >gi|61680624|pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide Reductase R2 Protein From E. Coli gi|61680625|pdb|1YFD|B Chain B, Crystal Structure Of The Y122h Mutant Of Ribonucleotide Reductase R2 Protein From E. Coli Length = 375 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 64 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 +II ++ D +F+ I +A Y L + GT + Sbjct: 122 HTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361 Query: 346 GAELKWD 352 +E+ D Sbjct: 362 DSEVDTD 368 >gi|188533366|ref|YP_001907163.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia tasmaniensis Et1/99] gi|188028408|emb|CAO96269.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia tasmaniensis Et1/99] Length = 376 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 142/347 (40%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N+ L P+ G+ V+ R + D+ + + + W P EV + Sbjct: 10 KNDQLLEPMFFGQP---VNVARFDQQKYDIFE----------KLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++ L D E+ + NL + +S+ + +A+ +S PE ++ A Sbjct: 57 SRDRIDYQ---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWA 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I ++A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 174 GTHQVNGKTITVNLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233 Query: 226 YIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ ++P + KE +Q+ + A E +A Sbjct: 234 LIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQEKEWAEYLFS 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R + +GL+ FK NP PW++ + Sbjct: 294 GGSMIGLNKDILCQYIEYITNIRMNAVGLDLPFKTRSNPIPWINSWL 340 >gi|285016983|ref|YP_003374694.1| ribonucleotide-diphosphate reductase beta subunit protein [Xanthomonas albilineans GPE PC73] gi|283472201|emb|CBA14708.1| probable ribonucleotide-diphosphate reductase beta subunit protein [Xanthomonas albilineans] Length = 346 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 77/325 (23%), Positives = 139/325 (42%), Gaps = 18/325 (5%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N W+P EV M+ D + L+ E+ Sbjct: 25 GTTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKGDAKQY---GELSAREKNAYDSI 81 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143 +G A+ +S I + ++++P +E +H+ ++ Y++ S+ D+ Sbjct: 82 IGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASIAGLADQN 140 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + R P+I A+ +Q ++ E L + + EG+ FY+ Sbjct: 141 RVFEIARTHPTIVARNQPIMQAYDD--------FMREKTAETLLRSLIQSSILEGINFYS 192 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA +L R N+M G + +I RDE H F ++I I EN L T E Sbjct: 193 GFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISELIRAIIGENAELQTNELTDYVHQ 252 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPW 322 A LE ++ E + G G++ QY+++ AN+ +G+E L+ ++N PW Sbjct: 253 AFEHAIRLETEWSSEVL-DGIEGIDVDEMIQYVKYRANKMSGMLGIEKLYTGASDNVMPW 311 Query: 323 MSEVID--LKKEKNFFETRVTEYQQ 345 + D + + +FFE R Y++ Sbjct: 312 IKAYADNFTETKTDFFEMRNASYKK 336 >gi|190896572|gb|ACE96799.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896574|gb|ACE96800.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896576|gb|ACE96801.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896578|gb|ACE96802.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + E R + Q E +HS + ++ + D E F+ VP + Sbjct: 1 AGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEEQVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|148825799|ref|YP_001290552.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittEE] gi|148715959|gb|ABQ98169.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittEE] Length = 376 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 76/339 (22%), Positives = 138/339 (40%), Gaps = 26/339 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH-WMPTEVPMQDDLALWK 69 + K + + +V + KY +EK + + W P EV + D + Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKY-ETFEKLIEKQLSFSWRPEEVDVSQDRIDYA 64 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS Sbjct: 65 ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSR 121 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182 ++ +II ++ D +F+ I +A Y L S + GT D Sbjct: 122 SYTHIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYGEGTYTVDGK 181 Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 ++ L + E + FY FA + M G A+ ++I RDE+L Sbjct: 182 ECVVTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEAL 241 Query: 234 HLNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL ++N + ++P + +E +Q++ + A E A+A G +GLN Sbjct: 242 HLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLN 301 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F+ NP PW++ + Sbjct: 302 RDILVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340 >gi|163842202|ref|YP_001626607.1| ribonucleotide-diphosphate reductase subunit beta [Renibacterium salmoninarum ATCC 33209] gi|162955678|gb|ABY25193.1| ribonucleoside-diphosphate reductase beta chain [Renibacterium salmoninarum ATCC 33209] Length = 325 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 66/333 (19%), Positives = 126/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W NN W+P +VP+ +D+ W + LT DE+ + R Sbjct: 16 NWNRIQDDKDVEVWN---RLVNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVFTGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L +++ P AF E+VH+ ++ I ++L + E F Sbjct: 70 TLLDTLQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFR 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA + Y + V + E FY+GF Sbjct: 130 WSVENENLQKKAQIVMNYY---------------TGDDPLKRKVASTLLESFLFYSGFYL 174 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L+E Sbjct: 175 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEERREEIKAYTFDLLYE 234 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 EI Y H+ + A ++++ + AN+ +G E +F T NP + Sbjct: 235 LYENEIQYTHDLYDAVGL---AEDVKKFLHYNANKALMNLGYEAMFPSTVTDVNPAILSA 291 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324 >gi|161617990|ref|YP_001595470.1| ribonucleotide reductase beta subunit [Enterobacteria phage phiEcoM-GJ1] gi|150416409|gb|ABR68787.1| ribonucleotide reductase beta subunit [Enterobacteria phage phiEcoM-GJ1] Length = 372 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 74/337 (21%), Positives = 137/337 (40%), Gaps = 20/337 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KYG + + W P EV + D ++ Sbjct: 6 FSQTKNNQLLEPMFFGQNVNVARYDQQKYGIFEKLIEKQLSFFWRPEEVDVSQDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L +E+ + NL + +S+ + +S PE ++ +F E +HS + Sbjct: 65 --KLPANEQHIFTSNLRYQILLDSIQGRGPNTVLLPIVSIPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDADQEF 185 + +II ++ D +F+ I A+A QY L + F G+ + Sbjct: 123 YTHIIRNIVTDPSIIFDEIVTNEHIKARAIGISQYYDELQQLTALWQLFGEGSHAGHEIS 182 Query: 186 LQDL-------FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 L++L + E + FY FA + M G A+ + I RDE+LHL Sbjct: 183 LRELKKKLYLCLMSINALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLTGT 242 Query: 239 IDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293 ++N + ++P + E +Q+ + + +A E +A G +GLN Sbjct: 243 QHMLNLLASGKDDPEMGEIAAECRQECQKLFEDAAQQEKDWADYLFKDGSMIGLNKQILC 302 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 Y+++I N R +GL+ FK NP PW++ ++ Sbjct: 303 GYVEYITNIRMQAVGLDAPFKGATNPIPWINAWLNSD 339 >gi|227496669|ref|ZP_03926945.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces urogenitalis DSM 15434] gi|226833817|gb|EEH66200.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces urogenitalis DSM 15434] Length = 324 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L+ K W+ N W+P +VP+ +D+ W + L + E+ M R Sbjct: 15 NWNRLVDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + E F Sbjct: 69 TLLDTIQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y + + + V + E FY+GF Sbjct: 129 WSEENENLQRKAKIILDYYR---------------GDDPEKRKVASTMLESFLFYSGFYA 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + E+ E + + +L E Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPQRQAELKDYTFDLLME 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + + ++++++ AN+ +G E LF NP S Sbjct: 234 LYDNEEQYTEDLYDELGL---TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGTAEATEDEDWD 323 >gi|151943458|gb|EDN61769.1| ribonucleotide reductase [Saccharomyces cerevisiae YJM789] gi|190406805|gb|EDV10072.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a] gi|256270921|gb|EEU06048.1| Rnr4p [Saccharomyces cerevisiae JAY291] gi|259146684|emb|CAY79941.1| Rnr4p [Saccharomyces cerevisiae EC1118] gi|323333575|gb|EGA74969.1| Rnr4p [Saccharomyces cerevisiae AWRI796] gi|323348450|gb|EGA82695.1| Rnr4p [Saccharomyces cerevisiae Lalvin QA23] Length = 345 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 138/342 (40%), Gaps = 27/342 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + + + D+ +L S + P+KY W Y + W E+ + D ++ Sbjct: 14 ERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ- 72 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 LTDD++ I L SS++LV ++ L NPE + + Q E ++S Sbjct: 73 --KLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEV 130 Query: 131 FQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 + ++ + D + F +P + K + ++ D + Sbjct: 131 YSMMVDAFFKDPKNIPLFKEIANLPEVKHKTAFIERWI-------------SNDDSLYAE 177 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V + EG++ +A + L M G+A + I RD + +F + Sbjct: 178 RLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLF------ 231 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 HL TK + ++ EA +E Y ++P G++ S Y++F+A+ G Sbjct: 232 -AHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFG 290 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 E + NPF +M +V K FFE +V++YQ+ +++ Sbjct: 291 NEKYYNAV-NPFEFMEDVATAGKTT-FFEKKVSDYQKASDMS 330 >gi|320531976|ref|ZP_08032874.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320135808|gb|EFW27858.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 324 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W + L + E+ M R Sbjct: 15 NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P L AF E+VH+ ++ I ++L + E F Sbjct: 69 TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y + + + V + E FY+GF Sbjct: 129 WSEENENLQRKARIILDYYR---------------GDDPEKRKVASTMLESFLFYSGFYA 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + E+ +E + + +L E Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQQELKDYTFELLME 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + + ++++++ AN+ +G E LF NP S Sbjct: 234 LYDNEEQYTEDLYDELGL---TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 291 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 323 >gi|319785673|ref|YP_004145148.1| ribonucleotide reductase [Pseudoxanthomonas suwonensis 11-1] gi|317464185|gb|ADV25917.1| ribonucleotide reductase [Pseudoxanthomonas suwonensis 11-1] Length = 354 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 76/328 (23%), Positives = 138/328 (42%), Gaps = 18/328 (5%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N W+P EV M+ D + L+ E+ Sbjct: 33 GTTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKSDARQY---GELSAREKNAFDSI 89 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143 +G A+ +S I + ++++P +E +H+ ++ Y++ S+ ++ Sbjct: 90 IGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLANQN 148 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + R P+I + + ++ E L + + EG+ FY+ Sbjct: 149 RVFEIARTHPTILRRNAPIMAAYDD--------FMREKTAETLLRALIQSSILEGINFYS 200 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA +L R N+M G + +I RDE H F +VI I ENP L T E Sbjct: 201 GFAYFYNLVRQNRMAGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDELADYVHL 260 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPW 322 A LE + E + G G++ +Y+++ AN+ +G+E L+ + T+N PW Sbjct: 261 AFRHAIELETQWTGEVL-DGIDGIDVDEMIRYVKYRANKMAGMLGIESLYTETTDNVMPW 319 Query: 323 MSEVID--LKKEKNFFETRVTEYQQGAE 348 + D + + +FFE R Y++ Sbjct: 320 IRAYADNFTETKTDFFEMRNASYKKTNA 347 >gi|259907948|ref|YP_002648304.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia pyrifoliae Ep1/96] gi|224963570|emb|CAX55060.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia pyrifoliae Ep1/96] gi|283477829|emb|CAY73745.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia pyrifoliae DSM 12163] gi|310768143|gb|ADP13093.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia sp. Ejp617] Length = 376 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 137/338 (40%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQNKNDQLLEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I ++A Y L + GT + Sbjct: 123 YTHIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGEGTHQVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVNLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + KE +Q+ + A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQEKEWAEYLFSGGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R + +GL+ FK NP PW++ + Sbjct: 303 DILCQYIEYITNIRMNAVGLDLPFKTRSNPIPWINSWL 340 >gi|190896568|gb|ACE96797.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896580|gb|ACE96803.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + E R + Q E +HS + ++ + D E F+ VP + Sbjct: 1 AGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEEQVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNAA-NPFDWM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|193062401|ref|ZP_03043496.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E22] gi|192932067|gb|EDV84666.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E22] Length = 393 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 23 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 81 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 82 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 139 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 140 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 199 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 200 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 259 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E + + + +A E +A G +GLN Sbjct: 260 LTGTQHMLNLLRSGADDPEMAEIAEECKLECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 319 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 320 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 379 Query: 346 GAELKWD 352 AE+ D Sbjct: 380 DAEVDTD 386 >gi|326772780|ref|ZP_08232064.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces viscosus C505] gi|326637412|gb|EGE38314.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces viscosus C505] Length = 325 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W + L + E+ M R Sbjct: 16 NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P L AF E+VH+ ++ I ++L + E F Sbjct: 70 TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y + + + V + E FY+GF Sbjct: 130 WSEENANLQRKARIILDYYR---------------GDDPEKRKVASTMLESFLFYSGFYA 174 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + E+ +E + + +L E Sbjct: 175 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQQELKDYTFDLLME 234 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + + ++++++ AN+ +G E LF NP S Sbjct: 235 LYDNEEQYTEDLYDELGL---TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 291 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 292 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 324 >gi|27375117|ref|NP_766646.1| ribonucleotide-diphosphate reductase subunit beta [Bradyrhizobium japonicum USDA 110] gi|27348253|dbj|BAC45271.1| ribonucleoside-diphosphate reductase beta subunit [Bradyrhizobium japonicum USDA 110] Length = 360 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 82/328 (25%), Positives = 140/328 (42%), Gaps = 28/328 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y WA+E + HWM EVP+ DL W S +TD ER ++ + FF S+ V Sbjct: 36 RYAWAYEFWKRQQQTHWMGEEVPLGADLNDWAS-GRVTDSERALLTQIFRFFTQSDIEVG 94 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +N + + E VH + ++ +LG+ + E F +R + A Sbjct: 95 DNYFKRYIPIFQPLTVQMMMAAFTNMETVHIDAYALLLKTLGMPKTE-FEAFRGYAQMRA 153 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA++ D+ + + L +F EGM + FA +L+ R NKM Sbjct: 154 KADYM------------HEFGVDSVADVARTLAMFGAFTEGMALFASFAMLLNFPRHNKM 201 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + + +RDESLH I + ++ E T+ + + LE + Sbjct: 202 NGMGQIVSWSVRDESLHCEGIIKLFHEWHRETG-AVTRPVRDDIVDVAKTMVKLEENFVE 260 Query: 278 ETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-----------NPFPWMSE 325 G + + Y++++A+ R Q+ + P+F + E +P PW+ E Sbjct: 261 LAFGLGKIEGMLPEHIHAYVRYVADWRLAQLRIAPVFGFFEAKEGGFTQLKAHPLPWLVE 320 Query: 326 VIDLKKEKNFFETRVTEYQQGAE-LKWD 352 +++ + NFFE R TEY + A WD Sbjct: 321 ILNGVEHANFFEQRATEYSKAASRGSWD 348 >gi|260598671|ref|YP_003211242.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter turicensis z3032] gi|260217848|emb|CBA32365.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Cronobacter turicensis z3032] Length = 376 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 138/347 (39%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ VNV AR D KY + + W P EV + Sbjct: 10 KNNQLLEPMFFGQP-VNV-------ARYDQQ-----KYEIFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++ L + E+ + NL + +S+ + +A+ +S PE ++ A Sbjct: 57 SRDRIDFQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILKRAEGISHYYDDLIEMTSYWHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 174 GTHSVNGKTVTVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIR 233 Query: 226 YIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ + +E +Q+ + A E +A Sbjct: 234 LIARDEALHLTGTQHMLNLMRSGEDDPEMAIIAEECKQECYDLFVLAAQQEKEWAEYLFQ 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R +GL+ FK NP PW++ + Sbjct: 294 GGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFKTRSNPIPWINTWL 340 >gi|111023403|ref|YP_706375.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus jostii RHA1] gi|110822933|gb|ABG98217.1| ribonucleotide reductase [Rhodococcus jostii RHA1] Length = 321 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 127/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 12 NWNRVQDEKDAEVWD---RLVGNFWLPEKVPVSNDIPSWGT---LTPQEKQLTMRVFTGL 65 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L D + F Sbjct: 66 TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFR 125 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA + Y Q D+ + + + E FY+GF Sbjct: 126 WSEENPNLQRKAEIVMDYYQ-------------GDEPLKRKV--ASTLLESFLFYSGFYL 170 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + + + + +L E Sbjct: 171 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEQLTEAERDDLKNYTFELLFE 230 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 231 LYDNEVDYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 287 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 288 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 320 >gi|149911236|ref|ZP_01899859.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp. PE36] gi|149805690|gb|EDM65689.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp. PE36] Length = 376 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 73/335 (21%), Positives = 133/335 (39%), Gaps = 24/335 (7%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + + +V + KY + + W P EV + D ++ Sbjct: 9 TPNDQLKEPMFFGQHVNVARFDQQKYEIFEKLIERQLSFFWRPEEVDVSKDRIDYQQ--- 65 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++ + Sbjct: 66 LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTH 125 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTGTKDAD------ 182 II ++ D E+F+ I +A Y L + GT + Sbjct: 126 IIRNIINDPSEVFDDIVANEEILKRAKDIAGYYDDLINATQQLHQLGEGTHVVNGETIVV 185 Query: 183 -----QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 ++ L V V E + FY FA + M G A+ + I RDE+LHL Sbjct: 186 SQRAVKKKLYLAMVSVNVLEAVRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTS 245 Query: 238 GIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292 ++N + ++P + + E Q+++ + +A E +A G +GLN Sbjct: 246 TQHILNLMADGKDDPEMQEISIECFQETQKIFTDAAQQEKEWAEYLFKDGSMIGLNKDIL 305 Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 Y+++I N R +GL F+ NP PW++ + Sbjct: 306 SDYIEYITNTRMAAVGLPKAFEVKSNPLPWINAWL 340 >gi|119774862|ref|YP_927602.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella amazonensis SB2B] gi|119767362|gb|ABL99932.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella amazonensis SB2B] Length = 391 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 122/314 (38%), Gaps = 24/314 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y + + W P EV + D + L D ER + NL + +S+ Sbjct: 48 RYEVFEKLIEKQLSFFWRPEEVDVSRDKIDF---GKLPDHERHIFISNLKYQTLLDSIQG 104 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 105 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSSVFDDIVVNEEILK 164 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + GT D ++ L + E + F Sbjct: 165 RAGDISAYYDELIKLTQIYHLHGEGTHTVDGHVVDVTVRALKKALYLCMMSVNALEAIRF 224 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EF 257 Y FA + M G A+ + I RDE+LHLN ++N ++ E Sbjct: 225 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILNIMQGGKDDAEMAEIAIEC 284 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ++ + A E +A G +GLN QY+++I N+R + L + + Sbjct: 285 QQEAYDLFLRAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPLPYPES 344 Query: 317 ENPFPWMSEVIDLK 330 NP PWM ++ Sbjct: 345 TNPLPWMKNWLESD 358 >gi|325066257|ref|ZP_08124930.1| Ribonucleoside-diphosphate reductase [Actinomyces oris K20] Length = 324 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W + L + E+ M R Sbjct: 15 NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P L AF E+VH+ ++ I ++L + E F Sbjct: 69 TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y + + + V + E FY+GF Sbjct: 129 WSEENANLQRKARIILDYYR---------------GDDPEKRKVASTMLESFLFYSGFYA 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + E+ E + + +L E Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQAELKDYTFELLME 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + + ++++++ AN+ +G E LF NP S Sbjct: 234 LYDNEEQYTEDLYDELGL---TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 291 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 323 >gi|83754022|pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space Group P6(1)22 Length = 340 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 72/338 (21%), Positives = 136/338 (40%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 303 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340 >gi|329945141|ref|ZP_08293009.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328529340|gb|EGF56255.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 324 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W + L + E+ M R Sbjct: 15 NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P L AF E+VH+ ++ I ++L + E F Sbjct: 69 TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y + + + V + E FY+GF Sbjct: 129 WSEENENLQRKARIILDYYR---------------GDDPEKRKVASTMLESFLFYSGFYA 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + E+ E + + +L E Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQAELKDYTFELLME 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + + ++++++ AN+ +G E LF NP S Sbjct: 234 LYDNEEQYTEDLYDELGL---TEDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 291 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 323 >gi|1941986|pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain gi|1941987|pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Length = 340 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 72/338 (21%), Positives = 136/338 (40%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 64 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 122 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVAFACSFAFAERELMEGNAKIIRLIARDEALH 241 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339 >gi|120598753|ref|YP_963327.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. W3-18-1] gi|146293170|ref|YP_001183594.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella putrefaciens CN-32] gi|120558846|gb|ABM24773.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. W3-18-1] gi|145564860|gb|ABP75795.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella putrefaciens CN-32] gi|319426318|gb|ADV54392.1| ribonucleotide reductase [Shewanella putrefaciens 200] Length = 376 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 79/340 (23%), Positives = 139/340 (40%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---NDLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILR 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A +Y L + F GT D ++ L + E + F Sbjct: 150 RATDIAEYYDHLIKLTQVFNLFGAGTHLIDGEELVVNTRTLKKALYLCMMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHLN ++N ++ ++P + + Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILNIMQGGKDDPEMGEIAAQC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ++ + +A E +A G +GLN QY++FI N+R + L + + Sbjct: 270 QQEAYDLFLKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYPES 329 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PWM ++ + E V+ Y Q + + D Sbjct: 330 TNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDGD 369 >gi|190150315|ref|YP_001968840.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303253584|ref|ZP_07339722.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245900|ref|ZP_07527985.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247988|ref|ZP_07530018.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307254872|ref|ZP_07536697.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259315|ref|ZP_07541044.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307263658|ref|ZP_07545269.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915446|gb|ACE61698.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647504|gb|EFL77722.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306853260|gb|EFM85480.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855503|gb|EFM87676.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306862169|gb|EFM94138.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866682|gb|EFM98541.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306871035|gb|EFN02768.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 376 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++S Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS 65 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A +S PE ++ F E +HS + Sbjct: 66 ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + G D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQ 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + L + V E + FY FA + M G A+ ++I RDE LH Sbjct: 183 YQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L +++N I ++P + +E +Q++ + A E +A G +GLN Sbjct: 243 LTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNE 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 +Y+++I N R +GL F + NP PW++ + Sbjct: 303 DILVKYVEYITNIRMQAVGLPRPFAASSNPIPWINAWL 340 >gi|126208467|ref|YP_001053692.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae L20] gi|165976419|ref|YP_001652012.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303251074|ref|ZP_07337260.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307250239|ref|ZP_07532194.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252630|ref|ZP_07534523.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307261475|ref|ZP_07543145.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|126097259|gb|ABN74087.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876520|gb|ABY69568.1| ribonucleoside-diphosphate reductase, beta chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650084|gb|EFL80254.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306857725|gb|EFM89826.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859875|gb|EFM91895.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306868827|gb|EFN00634.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 376 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++S Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS 65 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A +S PE ++ F E +HS + Sbjct: 66 ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + G D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQ 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + L + V E + FY FA + M G A+ ++I RDE LH Sbjct: 183 YQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L +++N I ++P + +E +Q++ + A E +A G +GLN Sbjct: 243 LTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNE 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 +Y+++I N R +GL F + NP PW++ + Sbjct: 303 DILVKYVEYITNIRMQAVGLPRPFAASSNPIPWINAWL 340 >gi|89092731|ref|ZP_01165684.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum sp. MED92] gi|89083243|gb|EAR62462.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum sp. MED92] Length = 376 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 75/333 (22%), Positives = 133/333 (39%), Gaps = 27/333 (8%) Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + + M RS +V + KY + + W P EV + D + + + Sbjct: 12 DATKEPMFFGRSVNVARYDKQKYPIFEKLIEKQLSFFWRPEEVDLSTDRKDF---MNMPE 68 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ + NL + +S+ + +A +S PE + AF E +HS ++ +II Sbjct: 69 HEKHIFLSNLKYQTLLDSVQGRSPNIAFLPVVSLPELETWFETWAFSETIHSRSYTHIIR 128 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FTTGTK 179 ++ + E+F+ P I +A+ + + S + T + Sbjct: 129 NIITEPSEVFDQIVTNPEIIRRADSVTRLYDEFINLSSVHSIHGEGLHTVDGKVYDTSMR 188 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 + ++ L V E + FY FA + M G A+ + I RDE+LHL Sbjct: 189 NLKKKLYLTLVSINV-LEAIRFYVSFACSFAFAERAIMEGNAKIIKLIARDEALHLTGTQ 247 Query: 240 DVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294 ++N + KE +Q + EA E +A +G +GLNA Sbjct: 248 HMLNIMASGADDPDYKDIAKECEQDVYNIFKEAAQQEKDWAQYLFREGSMIGLNAQILSD 307 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 Y+++I N R + LE +F +NP PWM+ + Sbjct: 308 YVEYITNVRMKALNLEEIFPARQNPLPWMNAWL 340 >gi|183981661|ref|YP_001849952.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2 [Mycobacterium marinum M] gi|183174987|gb|ACC40097.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2 [Mycobacterium marinum M] Length = 324 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRVQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P L AF E+VH+ ++ I ++L + + F Sbjct: 69 TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L+Y + + V + E FY+GF Sbjct: 129 WSEENSNLQRKAEIVLEYYR---------------GDDPLKRKVASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLAAADEARRTELKDYTYELLFE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTQDEDWD 323 >gi|42543295|pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-D84e (D84e Mutant Of The R2 Subunit Of E. Coli Ribonucleotide Reductase) gi|42543296|pdb|1PM2|B Chain B, Crystal Structure Of Manganese Substituted R2-D84e (D84e Mutant Of The R2 Subunit Of E. Coli Ribonucleotide Reductase) Length = 339 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 135/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + ES+ + +A+ +S PE ++ AF E +HS + Sbjct: 64 --ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 122 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F NP PW++ + Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWL 339 >gi|294140834|ref|YP_003556812.1| ribonucleoside-diphosphate reductase subunit beta [Shewanella violacea DSS12] gi|293327303|dbj|BAJ02034.1| ribonucleoside-diphosphate reductase, beta subunit [Shewanella violacea DSS12] Length = 376 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 142/349 (40%), Gaps = 37/349 (10%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NN L P+ G+ VNV AR DV KY + + W P EV + Sbjct: 11 NNARLEPMFMGQS-VNV-------ARYDVQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + L D E+ + NL + +S+ + +A +S PE ++ +F Sbjct: 58 KDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTG 177 E +HS ++ +II ++ D +F+ E I +A QY L + G Sbjct: 115 SETIHSRSYTHIIRNIVNDPSIIFDDIVENEEILKRATDIAQYYDDLILLTQAFHLHGEG 174 Query: 178 TKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 T + ++ L V V E + FY FA + N M G A+ + Sbjct: 175 THIINGKELLVTQRTIKKSLYLCMVSVNVLEAIRFYVSFACSFAFAERNVMEGNAKIIRL 234 Query: 227 IMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I RDE+LHLN ++ ++ ++P + KE +Q + + +A E +A Sbjct: 235 IARDEALHLNSTQHILKIMRAGADDPEMGEIAKECEQLAYDIFVKAAEQEKEWAQYLFKD 294 Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 G +GLN QY+++I N R + L + NP PWM ++ Sbjct: 295 GSMIGLNQAILCQYVEYITNERMKSVNLPCHYDEITNPLPWMKNWLESD 343 >gi|170726650|ref|YP_001760676.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella woodyi ATCC 51908] gi|169811997|gb|ACA86581.1| Ribonucleoside-diphosphate reductase [Shewanella woodyi ATCC 51908] Length = 376 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 89/363 (24%), Positives = 150/363 (41%), Gaps = 38/363 (10%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 N+ L P+ G+ VNV AR DV KY + + W P EV + Sbjct: 11 NDARLEPMFLGQS-VNV-------ARYDVQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + L D E+ + NL + +S+ + +A +S PE ++ +F Sbjct: 58 KDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTG 177 E +HS ++ +II ++ D +F+ E I +A+ +Y TL + G Sbjct: 115 SETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILKRASDIAEYYDTLIKLTQAFHLLGEG 174 Query: 178 TKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 T D ++ L + V E + FY FA + M G A+ + Sbjct: 175 THMIDGRELIVTKREIKKALYLCMMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIRL 234 Query: 227 IMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I RDE+LHLN +I ++ ++P + KE +Q++ + +A E +A Sbjct: 235 IARDEALHLNSTQHIIKLMQAGKDDPEMGEIAKECEQQAYDIFVKAAEQEKEWARYLFKD 294 Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRV 340 G +GLN QY+++I N R + L+ + NP PWM ++ + E V Sbjct: 295 GSMIGLNEQILCQYVEYITNERMKSVNLDLPYAQITNPLPWMKTWLESDSVQVAPQEVEV 354 Query: 341 TEY 343 + Y Sbjct: 355 SSY 357 >gi|293392273|ref|ZP_06636607.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952807|gb|EFE02926.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 376 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 72/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ + +F+ I +A Y L S + GT D Sbjct: 123 YTHIIRNIVNNPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKE 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CVVSLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + ++P + +E +Q++ + A E +A G +GLN Sbjct: 243 LTGTQHILNIMAAGQDDPEMAKIAEECKQEAYDLFLAAAEQEKDWADYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F+ NP PW++ + Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340 >gi|118617484|ref|YP_905816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium ulcerans Agy99] gi|118569594|gb|ABL04345.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2 [Mycobacterium ulcerans Agy99] Length = 324 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRVQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P L AF E+VH+ ++ I ++L + + F Sbjct: 69 TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L+Y + + V + E FY+GF Sbjct: 129 WSEENSNLQRKAEIVLEYYR---------------GDDPLKRKVASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLAAADEARRTELKDYTYELLFE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATQDEDWD 323 >gi|33152746|ref|NP_874099.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus ducreyi 35000HP] gi|33148970|gb|AAP96488.1| ribonucleoside-diphosphate reductase, beta chain [Haemophilus ducreyi 35000HP] Length = 376 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 127/338 (37%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + GT D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRARDISCYYDDLIRDSQLYTLYGEGTYQVDGKA 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + L + V E + FY FA + M G A+ ++I RDE LH Sbjct: 183 CAVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLH 242 Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N I E QQ++ + A E +A G +GLN Sbjct: 243 LAGTQQMLNIIASGQDDPEMAEIAIECQQEAYDLFVAAAEQEKEWAEYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 +Y+++I N R +GL F NP PW++ + Sbjct: 303 EILVKYVEYITNIRMQSVGLPLPFATQSNPIPWINAWL 340 >gi|238751211|ref|ZP_04612705.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia rohdei ATCC 43380] gi|238710485|gb|EEQ02709.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia rohdei ATCC 43380] Length = 399 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 142/376 (37%), Gaps = 41/376 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ +V + K+ + + W P E+ + Sbjct: 33 KNNQLLEPMFLGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 79 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++ L + E+ + NL + +S+ + +A+ +S PE ++ + Sbjct: 80 SRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 136 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 137 FSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 196 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 197 GTHQVNGKTVVVNLHALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 256 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ E QQ+ + A E +A Sbjct: 257 MIARDEALHLTGTQHILNLMRSGEDDPEMAEIAVECQQQCYDLFVLAAEQEKEWAEYLFR 316 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339 G +GLN QY+++I N R +GL FK NP PW++ + + E Sbjct: 317 DGSMIGLNKEILCQYVEYITNIRMQAVGLGTPFKTRTNPIPWINSWLVSDNVQVAPQEVE 376 Query: 340 VTEY---QQGAELKWD 352 V+ Y Q +E+ D Sbjct: 377 VSSYLVGQIDSEISAD 392 >gi|258624428|ref|ZP_05719375.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM603] gi|258583275|gb|EEW08077.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM603] Length = 381 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 72/316 (22%), Positives = 124/316 (39%), Gaps = 27/316 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 37 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 93 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 94 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 153 Query: 158 KANWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 +A Y L + +D ++ L E + Sbjct: 154 RAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVNVSMRDLKKKLYLCLMSVNA-LEAIR 212 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKE 256 FY FA + M G A+ + I RDE+LHL +IN ++ +E Sbjct: 213 FYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEE 272 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +Q+S + +A E +A G +GLN QY+++I N R +GLEP + Sbjct: 273 CKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPA 332 Query: 316 T-ENPFPWMSEVIDLK 330 NP PW++ + Sbjct: 333 AVNNPIPWINAWLSSD 348 >gi|307257037|ref|ZP_07538813.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864521|gb|EFM96428.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 376 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++S Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS 65 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A +S PE ++ F E +HS + Sbjct: 66 ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + G D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQ 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + L + V E + FY FA + M G A+ ++I RDE LH Sbjct: 183 YQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L +++N I ++P + +E +Q++ + A E +A G +GLN Sbjct: 243 LTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNE 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 +Y+++I N R +GL F NP PW++ + Sbjct: 303 DILVKYVEYITNIRMQAVGLPRPFATASNPIPWINAWL 340 >gi|262171721|ref|ZP_06039399.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus MB-451] gi|261892797|gb|EEY38783.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus MB-451] Length = 377 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 72/316 (22%), Positives = 124/316 (39%), Gaps = 27/316 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 149 Query: 158 KANWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 +A Y L + +D ++ L E + Sbjct: 150 RAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVNVSMRDLKKKLYLCLMSVNA-LEAIR 208 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKE 256 FY FA + M G A+ + I RDE+LHL +IN ++ +E Sbjct: 209 FYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEE 268 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +Q+S + +A E +A G +GLN QY+++I N R +GLEP + Sbjct: 269 CKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPA 328 Query: 316 T-ENPFPWMSEVIDLK 330 NP PW++ + Sbjct: 329 AVNNPIPWINAWLSSD 344 >gi|237785987|ref|YP_002906692.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium kroppenstedtii DSM 44385] gi|237758899|gb|ACR18149.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium kroppenstedtii DSM 44385] Length = 336 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 69/362 (19%), Positives = 133/362 (36%), Gaps = 37/362 (10%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M ++P++ G N D A D N + K W+ N W+P +VP Sbjct: 1 MKKTNAITPVRWGTNGNNHDR---PIAAIDWNTIPDDKDQEVWD---RLTGNFWLPEKVP 54 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W + N L E+ R +++ +++ P Sbjct: 55 LSNDIKSWGTLNEL---EQRTTMRVFTGLTMLDTIQGTVGAVSLIPDALTPHEEAVYTNI 111 Query: 121 AFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 AF E+VH+ ++ I +L + F E ++ KA L Y Sbjct: 112 AFMESVHARSYSSIFMTLSSTPEINDAFRWSEENENLQDKARIVLDYY------------ 159 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + D F + + + E FY+GF + K+ A+ + I+RDE++H + Sbjct: 160 -EGDNPFKRKV--ASTLLESFLFYSGFYLPMYWSSHGKLTNTADVIRLIIRDEAVHGYYI 216 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 + + ++ + +L+E E Y + + +G ++++++ Sbjct: 217 GYKYQRGQEALTQSERDGLKEYTFDLLYELYDNETQYTEDLYDE--LGWT-EDVKRFLRY 273 Query: 299 IANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELK 350 AN+ + +G E LF E +P S + +FF + Y G + Sbjct: 274 NANKALNNLGYEALFPADETRVSPAIISSLNPGADENHDFFSGSGSSYVIGKAESTTDED 333 Query: 351 WD 352 WD Sbjct: 334 WD 335 >gi|258620211|ref|ZP_05715250.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM573] gi|258587569|gb|EEW12279.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus VM573] Length = 381 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 72/316 (22%), Positives = 124/316 (39%), Gaps = 27/316 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 37 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 93 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 94 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 153 Query: 158 KANWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 +A Y L + +D ++ L E + Sbjct: 154 RAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVNVSMRDLKKKLYLCLMSVNA-LEAIR 212 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKE 256 FY FA + M G A+ + I RDE+LHL +IN ++ +E Sbjct: 213 FYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEE 272 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +Q+S + +A E +A G +GLN QY+++I N R +GLEP + Sbjct: 273 CKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPA 332 Query: 316 T-ENPFPWMSEVIDLK 330 NP PW++ + Sbjct: 333 AVNNPIPWINAWLSSD 348 >gi|156933156|ref|YP_001437072.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter sakazakii ATCC BAA-894] gi|156531410|gb|ABU76236.1| hypothetical protein ESA_00966 [Cronobacter sakazakii ATCC BAA-894] Length = 376 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 141/347 (40%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N+ L P+ G+ VNV AR D KY + + W P EV + Sbjct: 10 KNDQLLEPMFFGQP-VNV-------ARYDQQ-----KYEIFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++ L + E+ + NL + +S+ + +A+ +S PE ++ A Sbjct: 57 SRDRIDFQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQILKRAEGISHYYDDLIEMTSYWHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 174 GTHSVNGKTVTVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIR 233 Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ ++P + +E +Q+ + A E +A Sbjct: 234 LIARDEALHLTGTQHMLNLMRSGEDDPEMAAIAEECKQECYDLFVLAAQQEKEWAEYLFQ 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R +GL+ FK NP PW++ + Sbjct: 294 GGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFKTRSNPIPWINTWL 340 >gi|323497713|ref|ZP_08102728.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] gi|323317189|gb|EGA70185.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] Length = 377 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 76/342 (22%), Positives = 134/342 (39%), Gaps = 25/342 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNRKKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTK------ 179 + +II ++ D G +F+ E I +A Y L + + GT Sbjct: 123 YTHIIRNIVNDPGIVFDDIVENEHILKRAEDISHYYDDLIQLTNDYHRYGEGTHTINGEE 182 Query: 180 -----DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VSIKLHDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L +IN ++ +E +Q+ + EA E +A G +GLN Sbjct: 243 LTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330 QY+++I N R +GL + T NP PW++ + Sbjct: 303 DILCQYVEYITNIRMQAVGLGAAYPEATSNPIPWINAWLSSD 344 >gi|262165506|ref|ZP_06033243.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus VM223] gi|262025222|gb|EEY43890.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio mimicus VM223] Length = 377 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 72/316 (22%), Positives = 124/316 (39%), Gaps = 27/316 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 149 Query: 158 KANWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 +A Y L + +D ++ L E + Sbjct: 150 RAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVNISMRDLKKKLYLCLMSVNA-LEAIR 208 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKE 256 FY FA + M G A+ + I RDE+LHL +IN ++ +E Sbjct: 209 FYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINILRNGMDDFTFLQVAEE 268 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 +Q+S + +A E +A G +GLN QY+++I N R +GLEP + Sbjct: 269 CKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPA 328 Query: 316 T-ENPFPWMSEVIDLK 330 NP PW++ + Sbjct: 329 AVNNPIPWINAWLSSD 344 >gi|269957220|ref|YP_003327009.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica DSM 15894] gi|269305901|gb|ACZ31451.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica DSM 15894] Length = 326 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 124/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W + L++ E+ M R Sbjct: 17 NWNRLDDEKDLEVWD---RLVGNFWVPEKVPVSNDIQSWAT---LSEAEKNMTTRVFTGL 70 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + E F Sbjct: 71 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLISTKEIDEAFA 130 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P++ KA L+Y + + V + E FY+GF Sbjct: 131 WSEANPNLQRKAEIVLEYYR---------------GDDPLKRKVASTMLESFLFYSGFYA 175 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E + + +L E Sbjct: 176 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLALESQERQDEIKAYTFELLFE 235 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + ++++++ AN+ +G E LF E NP + Sbjct: 236 LYENEVEYTEALYGELGL---TEDVKKFLRYNANKALMNLGYEALFPKEETDVNPAILAA 292 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 LSPNADENHDFFSGSGSSYVIGKAVDTTDDDWD 325 >gi|322514736|ref|ZP_08067762.1| ribonucleotide-diphosphate reductase beta subunit [Actinobacillus ureae ATCC 25976] gi|322119331|gb|EFX91447.1| ribonucleotide-diphosphate reductase beta subunit [Actinobacillus ureae ATCC 25976] Length = 376 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 134/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++S Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS 65 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A +S PE ++ F E +HS + Sbjct: 66 ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + G D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQ 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + L + V E + FY FA + M G A+ ++I RDE LH Sbjct: 183 YQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L +++N + ++P + +E +Q++ + A E +A G +GLN Sbjct: 243 LTGTQNMLNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNE 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 +Y+++I N R +GL F + NP PW++ + Sbjct: 303 DILVKYVEYITNIRMQAVGLPRPFATSSNPIPWINAWL 340 >gi|254493923|ref|ZP_05107094.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae 1291] gi|260440303|ref|ZP_05794119.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae DGI2] gi|268594982|ref|ZP_06129149.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae 35/02] gi|268596639|ref|ZP_06130806.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae FA19] gi|268599210|ref|ZP_06133377.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae MS11] gi|268601557|ref|ZP_06135724.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID18] gi|268603896|ref|ZP_06138063.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID1] gi|268682359|ref|ZP_06149221.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID332] gi|268684517|ref|ZP_06151379.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae SK-92-679] gi|268686827|ref|ZP_06153689.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae SK-93-1035] gi|291043595|ref|ZP_06569311.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae DGI2] gi|293398906|ref|ZP_06643071.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria gonorrhoeae F62] gi|59717937|gb|AAW89342.1| putative ribonucleoside diphosphate reductase I beta chain [Neisseria gonorrhoeae FA 1090] gi|226512963|gb|EEH62308.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae 1291] gi|268548371|gb|EEZ43789.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae 35/02] gi|268550427|gb|EEZ45446.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae FA19] gi|268583341|gb|EEZ48017.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae MS11] gi|268585688|gb|EEZ50364.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID18] gi|268588027|gb|EEZ52703.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID1] gi|268622643|gb|EEZ55043.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID332] gi|268624801|gb|EEZ57201.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae SK-92-679] gi|268627111|gb|EEZ59511.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae SK-93-1035] gi|291012058|gb|EFE04047.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae DGI2] gi|291610320|gb|EFF39430.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria gonorrhoeae F62] Length = 384 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 216 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAEL 276 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 277 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 337 NQNPIPWINAWLSSD 351 >gi|304445703|pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of E. Coli gi|304445704|pdb|2XOF|B Chain B, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of E. Coli Length = 375 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 64 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 +II ++ D +F+ I +A Y L + GT + Sbjct: 122 XTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361 Query: 346 GAELKWD 352 +E+ D Sbjct: 362 DSEVDTD 368 >gi|116670901|ref|YP_831834.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter sp. FB24] gi|116611010|gb|ABK03734.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Arthrobacter sp. FB24] Length = 324 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 126/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W NN W+P +VP+ +D+ W + LT DE+ + R Sbjct: 15 NWNRIQDDKDVDVWN---RLVNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + E F Sbjct: 69 TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA + Y Q + V + E FY+GF Sbjct: 129 WSTENANLQKKAQIVMDYYQ---------------GDDPLKRKVASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 174 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEEKRQEIKDYTFELLFE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 E+ Y H+ + A ++++ + AN+ +G E +F + NP + Sbjct: 234 LYENEVQYTHDLYDSVGL---AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323 >gi|289664735|ref|ZP_06486316.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 349 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 5 ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 65 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ D+ +F + R P+I + + + +D Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRD 172 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA +L R N+M G + +I RDE H F + Sbjct: 173 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 232 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I EN L E A LE + E + G G++ +Y+++ A Sbjct: 233 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 291 Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 N+ +G+E L++ +N PW+ D + + +FFE R Y++ Sbjct: 292 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 339 >gi|127512873|ref|YP_001094070.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella loihica PV-4] gi|126638168|gb|ABO23811.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella loihica PV-4] Length = 376 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 85/363 (23%), Positives = 146/363 (40%), Gaps = 38/363 (10%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NN L P+ G+ VNV AR D+ KY + + W P EV + Sbjct: 11 NNALLEPMFLGQS-VNV-------ARYDIQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + L D E+ + NL + +S+ + +A +S PE ++ +F Sbjct: 58 KDKIDYA---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTG 177 E +HS ++ +II ++ D +F+ + I +A+ Y L G Sbjct: 115 SETIHSRSYTHIIRNIVNDPSVVFDDIVQNEEILKRASDIADYYDNLIELSQIYHLMGEG 174 Query: 178 TKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 T + + ++ L + V E + FY FA + M G A+ + Sbjct: 175 THEINGKTVEVTTRAIKKALYLCMMSVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIRL 234 Query: 227 IMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I RDE+LHLN ++ ++ ++P + KE +Q + + +A E +A Sbjct: 235 IARDEALHLNSTQHILKLMQGGKDDPEMAEIAKECEQTAIDIFVKAAEQEKEWAKYLFKD 294 Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRV 340 G +GLN QY+++I N R + L + NP PWM ++ + E V Sbjct: 295 GSMIGLNEQILCQYVEYITNERMKSVNLVSPYADQSNPLPWMKNWLESDSVQVAPQEVEV 354 Query: 341 TEY 343 + Y Sbjct: 355 SSY 357 >gi|251790602|ref|YP_003005323.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya zeae Ech1591] gi|247539223|gb|ACT07844.1| ribonucleotide reductase [Dickeya zeae Ech1591] Length = 376 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 151/376 (40%), Gaps = 41/376 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 N+ L P+ G+ VNV AR D KY + + W P EV + Sbjct: 10 KNDQLLEPMFFGQP-VNV-------ARYDQQ-----KYEIFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++ GL + E+ + NL + +S+ + +A+ +S PE ++ A Sbjct: 57 SRDRIDYQ---GLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWA 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A + L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISGFYDELIELTSYYHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 174 GTHQVNGKTVTINLYELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233 Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ ++P + +E QQ+ + A E +A Sbjct: 234 LIARDEALHLTGTQHMLNLMRAGQDDPEMAQVAEECQQQCYDLFVLAAQQEKEWAEYLFR 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETR 339 G +GLN QY+++I N R +GL F+ NP PW++ + + E Sbjct: 294 DGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETRTNPIPWINAWLVSDNVQVAPQEVE 353 Query: 340 VTEY---QQGAELKWD 352 V+ Y Q +E+ D Sbjct: 354 VSSYLVGQIDSEINTD 369 >gi|269794349|ref|YP_003313804.1| ribonucleoside-diphosphate reductase class Ib subunit beta [Sanguibacter keddieii DSM 10542] gi|269096534|gb|ACZ20970.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Sanguibacter keddieii DSM 10542] Length = 325 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 16 NWNRVEDEKDSEVWD---RLTGNFWLPEKVPVSNDIQSWAT---LTPVEKELTTRVFTGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P AF E+VH+ ++ I ++L + + F Sbjct: 70 TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLISTQEIDDAFR 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L+Y + V + E FY+GF Sbjct: 130 WSEENANLQRKAEIVLEYYH---------------GDSPLKRKVASTLLESFLFYSGFYL 174 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + E + + +L E Sbjct: 175 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKLSPAERDEMKAYTFELLFE 234 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + ++++++ AN+ +G E LF E NP + Sbjct: 235 LYENEVQYTADLYDGVGL---TEDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 291 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324 >gi|85059563|ref|YP_455265.1| ribonucleotide-diphosphate reductase subunit beta [Sodalis glossinidius str. 'morsitans'] gi|84780083|dbj|BAE74860.1| ribonucleoside-diphosphate reductase 1 beta subunit [Sodalis glossinidius str. 'morsitans'] Length = 376 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 142/348 (40%), Gaps = 37/348 (10%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + N+ L P+ G+ +V+ R + D+ + + + W P EV Sbjct: 9 VKNDQLLEPMFFGQ---SVNVARFDQQKYDIFE----------KLIEKQLSFFWRPEEVD 55 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D ++ L + E+ + NL + +S+ + +A+ +S PE ++ Sbjct: 56 VSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETW 112 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FT 175 AF E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 113 AFSETIHSRSYTHIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDGLIELTSYYHLLG 172 Query: 176 TGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 GT + ++ L + E + FY FA + M G A+ Sbjct: 173 EGTHQVNGKTVVVNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKII 232 Query: 225 QYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE+LHL ++N ++ ++P + +E QQ+S + A E +A Sbjct: 233 RLIARDEALHLTSTQHMLNLMRSGEDDPEMAEIARECQQESYDLFLLAAQQEKEWASYLF 292 Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R +GL+ F NP PW++ + Sbjct: 293 RDGSMIGLNKDILCQYVEYITNIRMQSVGLDLPFATRSNPIPWINSWL 340 >gi|149190928|ref|ZP_01869191.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii AK1] gi|148835283|gb|EDL52257.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii AK1] Length = 377 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 84/352 (23%), Positives = 142/352 (40%), Gaps = 40/352 (11%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH-WMPTEVP 60 NN P+ G+ VNV AR D + +EK + + W P EV Sbjct: 10 KNNALKEPMFLGQP-VNV-------ARYDQQKF------EIFEKLIEKQLSFFWRPEEVD 55 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D + N L + E+ + NL + +S+ + +A+ +S PE ++ Sbjct: 56 VSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETW 112 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FT 175 +F E +HS ++ +II ++ D G +F+ E I +A Y L + F Sbjct: 113 SFSETIHSRSYTHIIRNIVNDPGVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRFG 172 Query: 176 TGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 GT + ++ L + E + FY FA + M G A+ Sbjct: 173 EGTHNIKGEEVKVNLYDLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKII 232 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE+LHL +IN ++ +E +Q + EA E +A Sbjct: 233 KLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQDCFDLFKEAAEQEKEWAEYLF 292 Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330 G +GLN QY+++I+N R +GL+ + T NP PW++ + Sbjct: 293 KDGSMIGLNKDILCQYVEYISNVRMQAVGLDAAYPEATSNPIPWINAWLSSD 344 >gi|52425023|ref|YP_088160.1| ribonucleotide-diphosphate reductase subunit beta [Mannheimia succiniciproducens MBEL55E] gi|52307075|gb|AAU37575.1| NrdF protein [Mannheimia succiniciproducens MBEL55E] Length = 376 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 136/338 (40%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V++ KY + + W P EV + D + Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVSRYDQQKYETFEKLIEKQLSFFWRPEEVDVAQDRIDYA- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S F GT + Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYNLFGEGTYKVEGKE 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ ++I RDE+LH Sbjct: 183 CKVTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + ++P + +E +Q++ + A E A+A G +GLN Sbjct: 243 LTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKAWADYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F+ NP PW++ + Sbjct: 303 DILVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340 >gi|293395206|ref|ZP_06639492.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582] gi|291422383|gb|EFE95626.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582] Length = 376 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + K+ + + W P EV + D ++ Sbjct: 6 FSQNKNDQLLEPMFFGQSVNVARFDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 65 --ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPALVFDDIVTNEEIKKRAKDISGYYDDLIEMTSYYHLLGEGTHQVNGQS 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTVSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + E QQ+ + A E +A G +GLN Sbjct: 243 LTGTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAQQEKEWAEYLFSGGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL FK NP PW++ + Sbjct: 303 DILCQYVEYITNIRMQAVGLGAPFKTRSNPIPWINAWL 340 >gi|3891570|pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia Coli gi|3891571|pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia Coli Length = 340 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 136/338 (40%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 64 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 F +II ++ D +F+ I +A Y L + GT + Sbjct: 122 FTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339 >gi|190896528|gb|ACE96777.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q + +HS + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIDNIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|190896520|gb|ACE96773.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|119961248|ref|YP_948075.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter aurescens TC1] gi|119948107|gb|ABM07018.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter aurescens TC1] Length = 324 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 122/323 (37%), Gaps = 26/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + NN W+P +VP+ +D+ W + LT DE+ + R Sbjct: 15 NWNKIQDDKDVEVWNRLVNNFWLPEKVPLSNDVQSWHT---LTPDEQQLTMRVFTGLTLL 71 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ +++ P AF E+VH+ ++ I ++L + + F Sbjct: 72 DTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDDAFRWSL 131 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E ++ KA + Y Q + V + E FY+GF + Sbjct: 132 ENENLQKKAQIVMDYYQ---------------GDDPLKRKVASTLLESFLFYSGFYLPMY 176 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 177 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEARKQEIKDYTFELLFELYE 236 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327 E+ Y H+ + A ++++ + AN+ +G E +F + NP + Sbjct: 237 NEVQYTHDLYDGVGL---AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAILSALSP 293 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G + Sbjct: 294 NADENHDFFSGSGSSYVIGKAVN 316 >gi|261253084|ref|ZP_05945657.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio orientalis CIP 102891] gi|260936475|gb|EEX92464.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio orientalis CIP 102891] Length = 377 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 76/342 (22%), Positives = 134/342 (39%), Gaps = 25/342 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNRTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D G +F+ E I +A Y L + + GT + Sbjct: 123 YTHIIRNIVNDPGLVFDDIVENEHILKRAKDISGYYDDLIQLTNDYHRYGEGTHTINGEE 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VTITLHNLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L +IN ++ +E +Q+ + EA E +A G +GLN Sbjct: 243 LTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330 QY+++I N R +GL + T NP PW++ + Sbjct: 303 DILCQYVEYITNIRMQAVGLGAAYPEATSNPIPWINAWLSSD 344 >gi|254505962|ref|ZP_05118107.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus 16] gi|219551185|gb|EED28165.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus 16] Length = 323 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 119/333 (35%), Gaps = 33/333 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ WK LT +E+ + R Sbjct: 13 NWNRMQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQTWKQ---LTQEEQTLTIRVFTGL 66 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A+ P L AF EAVH+ ++ + ++L E F Sbjct: 67 TLLDTIQNTVGAPALMADARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFR 126 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P + KA L+ P V V E FY+GF Sbjct: 127 WAEENPLLQKKAQLVLEDYLAQDDP--------------LKKKVASVFLESFLFYSGFYL 172 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + E + + ++ +++ Sbjct: 173 PMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAFNELSQQEQAKVKDEAYSLMFS 232 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 +E Y + + + ++ + AN+ +G EPLF NP + Sbjct: 233 LYEIESQYTESLYDQVGL---TEDVKHFLHYNANKALMNLGFEPLFPDELCQVNPAIMAA 289 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 322 >gi|15827930|ref|NP_302193.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium leprae TN] gi|221230407|ref|YP_002503823.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium leprae Br4923] gi|14195114|sp|Q9CBQ2|RIR2_MYCLE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|13093483|emb|CAC30684.1| ribonucleotide reductase small subunit [Mycobacterium leprae] gi|219933514|emb|CAR71826.1| ribonucleotide reductase small subunit [Mycobacterium leprae Br4923] Length = 325 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 127/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L K W+ N W+P +VP+ +DL W + LT E+ + R Sbjct: 16 NWNWLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLPSWGT---LTASEKQLTMRVFTGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + E F Sbjct: 70 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTAEIDEAFR 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA ++Y + D+ + + + E FY+GF Sbjct: 130 WSEENNNLQRKAKIVMEYYR-------------GDEPLKRKV--ASTLLESFLFYSGFYL 174 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + E ++ + +L E Sbjct: 175 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLVLVDDARRAELKEYTYELLFE 234 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 235 LYDNEVEYTQDLYDRVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 291 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 324 >gi|323494790|ref|ZP_08099889.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio brasiliensis LMG 20546] gi|323310983|gb|EGA64148.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio brasiliensis LMG 20546] Length = 377 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 72/313 (23%), Positives = 129/313 (41%), Gaps = 26/313 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L + E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ D G +F+ E I +A Sbjct: 92 PNVALLPLVSLPEVETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRA 151 Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203 Y L + + GT + ++ L + E + FY Sbjct: 152 EDISHYYDDLIQMTNDYHRYGEGTHQINGEEVTIKLHDLKKKLYVCLMSVNALEAIRFYV 211 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQ 259 FA + M G A+ + I RDE+LHL +IN ++ +E +Q Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQ 271 Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317 + + +A E +A G +GLN QY+++I N R +GL+ + T Sbjct: 272 ECFDLFKDAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDAAYPEATS 331 Query: 318 NPFPWMSEVIDLK 330 NP PW++ + Sbjct: 332 NPIPWINAWLSSD 344 >gi|226365904|ref|YP_002783687.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus opacus B4] gi|226244394|dbj|BAH54742.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus opacus B4] Length = 321 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 127/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 12 NWNRVQDEKDAEVWD---RLVGNFWLPEKVPVSNDIPSWGT---LTAQEKQLTMRVFTGL 65 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L D + F Sbjct: 66 TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFR 125 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ KA + Y Q D+ + + + E FY+GF Sbjct: 126 WSEENPNLQRKAEIVMDYYQ-------------GDEPLKRKV--ASTLLESFLFYSGFYL 170 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + + + + +L E Sbjct: 171 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEQLTEAERDDLKNYTFELLFE 230 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 231 LYDNEVDYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 287 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 288 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 320 >gi|161572976|ref|YP_207754.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae FA 1090] gi|194098862|ref|YP_002001926.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae NCCP11945] gi|239999147|ref|ZP_04719071.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae 35/02] gi|240013945|ref|ZP_04720858.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae DGI18] gi|240016387|ref|ZP_04722927.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae FA6140] gi|240080506|ref|ZP_04725049.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae FA19] gi|240113126|ref|ZP_04727616.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae MS11] gi|240115882|ref|ZP_04729944.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID18] gi|240118180|ref|ZP_04732242.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID1] gi|240121514|ref|ZP_04734476.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID24-1] gi|240123728|ref|ZP_04736684.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae PID332] gi|240125919|ref|ZP_04738805.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae SK-92-679] gi|240128431|ref|ZP_04741092.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|193934152|gb|ACF29976.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria gonorrhoeae NCCP11945] Length = 377 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 329 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 330 NQNPIPWINAWLSSD 344 >gi|78049716|ref|YP_365891.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038146|emb|CAJ25891.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 347 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ D+ +F + R P+I + + + ++ Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRE 170 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA +L R N+M G + +I RDE H F + Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISE 230 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I EN L E A LE + E + G G++ +Y+++ A Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289 Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 N+ +G+E L++ +N PW+ D + + +FFE R Y++ Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337 >gi|40889712|pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of Ribonucleotide Reductase gi|40889713|pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of Ribonucleotide Reductase Length = 375 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 64 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 F +II ++ D +F+ I +A Y L + GT + Sbjct: 122 FTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + Y FA + M G A+ + I RDE+LH Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRAYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361 Query: 346 GAELKWD 352 +E+ D Sbjct: 362 DSEVDTD 368 >gi|94499220|ref|ZP_01305758.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp. RED65] gi|94428852|gb|EAT13824.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp. RED65] Length = 376 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 73/326 (22%), Positives = 135/326 (41%), Gaps = 24/326 (7%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +V++ KY + + W P EV + D + L + E+ + Sbjct: 18 MFFGENVNVSRYDTQKYKIFEQLIEKQLSFFWRPEEVDLSTDRKDFA---ALPEHEKHIF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II ++ D Sbjct: 75 LSNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNVISDP 134 Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQE---------------FL 186 ++F+ IT +A +Y L ++ + D E L Sbjct: 135 SKVFDDIVSNEYITKRAESVTKYYDDLIEGVTYYQNLGEGDHEINGETIHVSLRDLKRKL 194 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ-- 244 V E + FY FA + KM G A+ + I RDE+LHL ++ Sbjct: 195 YLTMASVNVLEAIRFYVSFACSFAFAERTKMEGNAKIIKLIARDEALHLTGTQHMMQIWA 254 Query: 245 IKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIAN 301 + ++P + E +++ + EA E +A G +GLN QY+++I N Sbjct: 255 LGKDDPEMGEIANECKKQVIEIFREAAQQEKDWAEYLFKDGSMIGLNKDILCQYVEYITN 314 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVI 327 +R IGL+ +F+ +NP PW++ + Sbjct: 315 QRLGAIGLDNIFETRQNPIPWINAWL 340 >gi|229818600|ref|YP_002880126.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM 12333] gi|229564513|gb|ACQ78364.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM 12333] Length = 326 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 127/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W NN W+P +VP+ +D+ W + LTD E+ + R Sbjct: 17 NWNRLQDEKDLEVWN---RLVNNFWLPEKVPVSNDIPSWGT---LTDVEKTLTMRVFTGL 70 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P AF E+VH+ ++ I ++L + F Sbjct: 71 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDDAFR 130 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA ++Y + D+ + + + E FY+GF Sbjct: 131 WSEENSNLQRKAEIVMEYYR-------------GDEPLKRKV--ASTLLESFLFYSGFYL 175 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 176 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLEALAPEQREEIKSYTYELLFE 235 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + + ++++++ AN+ +G E LF E NP + Sbjct: 236 LYENEVQYTEDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPKDETDVNPAILAA 292 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 LSPNADENHDFFSGSGSSYVIGKAVNTEDDDWD 325 >gi|167623961|ref|YP_001674255.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella halifaxensis HAW-EB4] gi|167353983|gb|ABZ76596.1| Ribonucleoside-diphosphate reductase [Shewanella halifaxensis HAW-EB4] Length = 376 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 149/375 (39%), Gaps = 41/375 (10%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NN L P+ G+ VNV AR D KY + + W P EV + Sbjct: 11 NNALLEPMFLGQS-VNV-------ARYDQQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + L + E+ + NL + +S+ + +A +S PE ++ +F Sbjct: 58 RDKIDYA---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTG 177 E +HS ++ +II ++ D +F+ E I +A+ +Y L G Sbjct: 115 SETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILKRASDIAKYYDHLIKLSQAYHLLGEG 174 Query: 178 TKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + + D ++ L V V E + FY FA + M G A+ + Sbjct: 175 SHEIDGEIIEVTTREIKKALYLCMVSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIRL 234 Query: 227 IMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I RDE+LHLN ++ ++ ++P + KE +Q + + +A E +A Sbjct: 235 IARDEALHLNSTQHILKIMQGGKDDPEMAEIAKECEQTAIDIFVKAAEQEKEWAKYLFKD 294 Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRV 340 G +GLN QY+++I N R + + NP PWM ++ + E V Sbjct: 295 GSMIGLNETILCQYVEYITNERMKSVNFASPYAEQTNPLPWMKNWLESDSVQVAPQEVEV 354 Query: 341 TEY---QQGAELKWD 352 + Y Q + + D Sbjct: 355 SSYLVGQIDSSIDDD 369 >gi|157371509|ref|YP_001479498.1| ribonucleotide-diphosphate reductase subunit beta [Serratia proteamaculans 568] gi|157323273|gb|ABV42370.1| Ribonucleoside-diphosphate reductase [Serratia proteamaculans 568] Length = 376 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 137/348 (39%), Gaps = 39/348 (11%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH-WMPTEVP 60 NN L P+ G+ VNV + +EK + + W P EV Sbjct: 10 KNNQLLEPMFFGQS-VNVAR-------------FDQQKHEIFEKLIEKQLSFFWRPEEVD 55 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D ++ L + E+ + NL + +S+ + +A+ +S PE ++ Sbjct: 56 VSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETW 112 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FT 175 +F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 113 SFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISGYYDDLIEMTGYYHLLG 172 Query: 176 TGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 GT + ++ L + E + FY FA + M G A+ Sbjct: 173 EGTHQVNGKTVTVTLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKII 232 Query: 225 QYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE+LHL ++N ++ ++P + E QQ+ + A E +A Sbjct: 233 KLIARDEALHLTGTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAEQEKEWAEYLF 292 Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R +GL F NP PW++ + Sbjct: 293 RDGSMIGLNKDILCQYVEYITNIRMQAVGLGLPFATRSNPIPWINAWL 340 >gi|307944765|ref|ZP_07660103.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp. TrichSKD4] gi|307771979|gb|EFO31202.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp. TrichSKD4] Length = 329 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 67/343 (19%), Positives = 124/343 (36%), Gaps = 33/343 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D KR + + N+L K W N W+P +VP+ +D+ W + L DE+ Sbjct: 9 DMKRAVPRAVNWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSWAT---LHPDEQ 62 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 + R +++ + P L AF EAVH+ ++ + ++L Sbjct: 63 QLTIRVFTGLTLLDTIQNTVGAPTLMPDALTPHEEAVLTNIAFMEAVHARSYSSVFSTLC 122 Query: 140 L--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F E + AK+ L SP V V E Sbjct: 123 QTADVDEAFRWSEENEHLQAKSRLILDEYGAAGSPLRKK--------------VASVFLE 168 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 FY+GF + K+ A+ + I+RDE++H + +++ +E Sbjct: 169 SFLFYSGFYLPMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRMQETLSEAERQEI 228 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316 + + +++ + +E Y + + ++ + AN+ +G E LF + Sbjct: 229 KDFAFSLMFDLYEIEGKYTESLYDGVGL---TEDVKHFLHYNANKALMNLGYEALFPDSV 285 Query: 317 --ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 NP + + + +FF + Y G + WD Sbjct: 286 CQVNPAIMAALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 328 >gi|312883652|ref|ZP_07743377.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] gi|309368875|gb|EFP96402.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] Length = 323 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 33/343 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D + + + N++ K W N W+P ++P+ +D+ WK LT+DE+ Sbjct: 3 DKRFTTVSAINWNRIQDNKDLEIWN---RLTVNFWLPEKIPLSNDIQSWKQ---LTEDEQ 56 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 ++ R +++ + + P L AF EAVH+ ++ I ++L Sbjct: 57 VLTTRVFTGLTLLDTIQNTVGAPVLMKDARTPHEEAVLSNIAFMEAVHARSYSSIFSTLC 116 Query: 140 LDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 E F E P + KA L S P + + V E Sbjct: 117 TTPQIDEAFRWAEENPLLQQKAKIILDDYLQDSGP--------------LEKKIASVFLE 162 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 FY+GF + K+ A+ + I+RDE++H + E ++ Sbjct: 163 SFLFYSGFYLPMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLGYQELDEARQEQL 222 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-- 315 + K+ ++L +E Y + + + ++ + AN+ +G E LF Sbjct: 223 KDKAYSLLLSLYDIECQYTESLYDQVGL---TEDVKHFLHYNANKALMNLGFEALFPQEL 279 Query: 316 -TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 NP + + + +FF + Y G + WD Sbjct: 280 CNVNPAIMAALSPNSDENHDFFSGSGSSYVIGKAVVTEDEDWD 322 >gi|292488819|ref|YP_003531706.1| ribonucleoside-diphosphate reductase 1 subunit beta [Erwinia amylovora CFBP1430] gi|292899970|ref|YP_003539339.1| ribonucleoside-diphosphate reductase 1 subunit beta [Erwinia amylovora ATCC 49946] gi|291199818|emb|CBJ46941.1| ribonucleoside-diphosphate reductase 1 beta subunit [Erwinia amylovora ATCC 49946] gi|291554253|emb|CBA21550.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia amylovora CFBP1430] gi|312172977|emb|CBX81232.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia amylovora ATCC BAA-2158] Length = 376 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 143/347 (41%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ +V+ R + D+ + + + W P EV + Sbjct: 10 KNNQLLEPMFFGQ---SVNVARFDQQKYDIFE----------KLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++ L + E+ + NL + +S+ + +A+ +S PE ++ A Sbjct: 57 SRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWA 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I ++A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 174 GTHQVNGKTVTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233 Query: 226 YIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ ++P + KE +Q+ + A E +A Sbjct: 234 LIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQEKEWAEYLFS 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R + +GL+ FK NP PW++ + Sbjct: 294 GGSMIGLNKDILWQYIEYITNIRMNAVGLDLPFKTRSNPIPWINSWL 340 >gi|58580098|ref|YP_199114.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622097|ref|YP_449469.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58424692|gb|AAW73729.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366037|dbj|BAE67195.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 347 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ D+ +F + R P+I + + + ++ Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRE 170 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA +L R N+M G + +I RDE H F + Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I EN L E A LE + E + G G++ +Y+++ A Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289 Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 N+ +G+E L++ +N PW+ D + + +FFE R Y++ Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337 >gi|260778827|ref|ZP_05887719.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260604991|gb|EEX31286.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 377 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 72/313 (23%), Positives = 129/313 (41%), Gaps = 26/313 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L + E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ D G +F+ E I +A Sbjct: 92 PNVALLPLVSLPEVETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEHILKRA 151 Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203 Y L + + GT + ++ L + E + FY Sbjct: 152 EDISHYYDDLIQMTNDYHRYGEGTHTINGEDVKISLHELKKKLYVCLMSVNALEAIRFYV 211 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQ 259 FA + M G A+ + I RDE+LHL +IN ++ +E +Q Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFSFMQIAEECKQ 271 Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317 + + +A E +A G +GLN QY+++I N R +GL+ + T Sbjct: 272 ECFDLFKDAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDAAYPEATS 331 Query: 318 NPFPWMSEVIDLK 330 NP PW++ + Sbjct: 332 NPIPWINAWLSSD 344 >gi|188578920|ref|YP_001915849.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523372|gb|ACD61317.1| ribonucleoside-diphosphate reductase, beta subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 347 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R +LN ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLERIKILEPRHPNRSTSILNGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ D+ +F + R P+I + + + ++ Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRE 170 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA +L R N+M G + +I RDE H F + Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I EN L E A LE + E + G G++ +Y+++ A Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289 Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 N+ +G+E L++ +N PW+ D + + +FFE R Y++ Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337 >gi|261400675|ref|ZP_05986800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria lactamica ATCC 23970] gi|269209585|gb|EEZ76040.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria lactamica ATCC 23970] Length = 377 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKLVTVSLRGLKKKLYLCLMCVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRSGVDDPEMAEIAAEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 329 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 330 NQNPIPWINAWLSSD 344 >gi|242238482|ref|YP_002986663.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya dadantii Ech703] gi|242130539|gb|ACS84841.1| ribonucleotide reductase [Dickeya dadantii Ech703] Length = 376 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 24/311 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A + L + GT + ++ L + E + F Sbjct: 150 RARDISGFYDELIELTSYYHLLGEGTHQVNGKTVDINVYQLKKKLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + +E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGQDDPEMAKVAEEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ+ + A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QQQCYDLFVMAAQQEKEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETR 329 Query: 317 ENPFPWMSEVI 327 NP PW++ + Sbjct: 330 TNPIPWINAWL 340 >gi|254489413|ref|ZP_05102616.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp. GAI101] gi|214041920|gb|EEB82560.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp. GAI101] Length = 324 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 66/345 (19%), Positives = 126/345 (36%), Gaps = 34/345 (9%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++D + + N++ K W N W+P +VP+ +D+ W + L D Sbjct: 3 DLDHAPAVPRAVNWNRIQDDKDLEVWN---RLTVNFWLPEKVPLSNDVQSWAT---LKPD 56 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER + R L +++ ++ P L AF EAVH+ ++ I ++ Sbjct: 57 ERTLTIRVLTGLTLLDTIQNTVGAPSLMPDAQTPHEEAVLTNIAFMEAVHARSYSSIFST 116 Query: 138 LG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 L + + F + P + AK+ LQ + P + V Sbjct: 117 LCSTKEVDDAFRWSEDNPHLQAKSRLILQEYNATADP--------------LKRKIASVF 162 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 E FY+GF + K+ A+ + I+RDE++H + + + P Sbjct: 163 LESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQRATEQLPQADRD 222 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + + +++ + +E Y E + + ++ + AN+ +G E LF Sbjct: 223 ALKDFAFSLMFDLYEIEAHYTAELYDDLGL---TEDVKAFLHYNANKALQNLGYEALFPA 279 Query: 316 ---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 NP + D + +FF + Y G + WD Sbjct: 280 QVCEVNPAILAALSPDSE-NHDFFSGSGSSYVIGKAVATEDEDWD 323 >gi|325919223|ref|ZP_08181270.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325923021|ref|ZP_08184721.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325546491|gb|EGD17645.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325550297|gb|EGD21104.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC 19865] Length = 347 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 19/348 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLERIKILEPRHPNRSTAIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ D+ +F + R P+I + + +D Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFELARTHPTIIKRNAPIMGAYDD--------FLRD 170 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA +L R N+M G + +I RDE H F + Sbjct: 171 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I EN L + A LE + E + G G++ +Y+++ A Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 289 Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 N+ +G+E L++ +N PW+ D + + +FFE R Y++ Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337 >gi|330829606|ref|YP_004392558.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like protein [Aeromonas veronii B565] gi|328804742|gb|AEB49941.1| Ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Aeromonas veronii B565] Length = 393 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 137/341 (40%), Gaps = 29/341 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + W P EV + D ++ L E+ + NL + +S+ Sbjct: 49 KHEVFERLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPPHEQHIFISNLKYQTLLDSIQG 105 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ ++F+ I Sbjct: 106 RSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIVNTPAQVFDDIVTNEQILK 165 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201 +A + L + GT ++ L + E + F Sbjct: 166 RAGSISHFYDDLIEATALYNLHGEGTHTVAGREVTITLRELKKKLYLCLMSVNALEAIRF 225 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 226 YVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHMLNLMRTGQDDPEMAEIAAEC 285 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q + EA + E +A G +GLN QY+++I N R +GL+P F T Sbjct: 286 EQACFEIFKEAAIQEKEWAEYLFQDGSMIGLNKDILCQYVEYITNLRMSAVGLQPAFAGT 345 Query: 317 E-NPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 + NP PW++ + + E V+ Y Q +E+ D Sbjct: 346 KQNPIPWINTWLSSDNVQVAPQEVEVSSYLVGQIDSEVNAD 386 >gi|21244791|ref|NP_644373.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas axonopodis pv. citri str. 306] gi|325927516|ref|ZP_08188754.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans 91-118] gi|21110489|gb|AAM38909.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas axonopodis pv. citri str. 306] gi|325542109|gb|EGD13613.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans 91-118] Length = 347 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ D+ +F + R P+I + + + ++ Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRE 170 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA +L R N+M G + +I RDE H F + Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I EN L E A LE + E + G G++ +Y+++ A Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289 Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 N+ +G+E L++ +N PW+ D + + +FFE R Y++ Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337 >gi|313668429|ref|YP_004048713.1| ribonucleoside diphosphate reductase I beta chain [Neisseria lactamica ST-640] gi|313005891|emb|CBN87347.1| ribonucleoside diphosphate reductase I beta chain [Neisseria lactamica 020-06] Length = 377 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QDECFRLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 329 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 330 NQNPIPWINAWLSSD 344 >gi|7226528|gb|AAF41664.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis MC58] gi|254670476|emb|CBA06168.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha153] Length = 384 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 216 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ E Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 276 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 277 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 337 NQNPIPWINAWLSSD 351 >gi|262274472|ref|ZP_06052283.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Grimontia hollisae CIP 101886] gi|262221035|gb|EEY72349.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Grimontia hollisae CIP 101886] Length = 360 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 129/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + +D + N L + E+ + NL + +S+ Sbjct: 16 KYEIFEKLIEKQLSFFWRPEEVDVSNDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQG 72 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ + +F+ I Sbjct: 73 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVTNPSLVFDDIVVNEHIIK 132 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +AN Y L + G + ++ L + E + F Sbjct: 133 RANDIAGYYDDLIQATSDYHRLGEGEHTVNGQTVVVSLRELKKKLYICLMSVNALEAIRF 192 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + KE Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNILRSGDDDPEMAEIAKEC 252 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KY 315 +Q + A E +A G +GLN QY+++I N R +GL+P + Sbjct: 253 EQVCFDLFKNAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNLRMAAVGLKPAYQGA 312 Query: 316 TENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 313 NQNPIPWINAWLSSD 327 >gi|307129979|ref|YP_003881995.1| Ribonucleotide reductase of class Ia (aerobic), subunit beta [Dickeya dadantii 3937] gi|306527508|gb|ADM97438.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Dickeya dadantii 3937] Length = 376 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 127/311 (40%), Gaps = 24/311 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A + L + GT + ++ L + E + F Sbjct: 150 RAKDISGFYDELIELTSYYHLLGEGTHQVNGKTVNINVYELKKKLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + +E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRAGQDDPEMAKIAEEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ+ + A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETR 329 Query: 317 ENPFPWMSEVI 327 NP PW++ + Sbjct: 330 TNPIPWINAWL 340 >gi|262203177|ref|YP_003274385.1| ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM 43247] gi|262086524|gb|ACY22492.1| Ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM 43247] Length = 334 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 124/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +D+ W + LT+ E+ + R Sbjct: 25 NWNRVPDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTEYEKQLTMRVFTGL 78 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ + P L AF E+VH+ ++ I ++L + E F Sbjct: 79 TLLDTIQGTVGAVSLIPDATTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFR 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA + Y + + V + E FY+GF Sbjct: 139 WSEENDQLQRKAQIVMDYYR---------------GDDPLKRKVASTLLESFLFYSGFYL 183 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 184 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLEVQTAERRQELKDYTFELLFE 243 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + ++++++ AN+ +G E +F E NP + Sbjct: 244 LYDNESDYTEALYDEVGL---TEDVKKFLRYNANKALMNLGYEAMFPKDETDVNPAILSA 300 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 333 >gi|152997008|ref|YP_001341843.1| ribonucleotide-diphosphate reductase subunit beta [Marinomonas sp. MWYL1] gi|150837932|gb|ABR71908.1| Ribonucleoside-diphosphate reductase [Marinomonas sp. MWYL1] Length = 377 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 76/327 (23%), Positives = 134/327 (40%), Gaps = 25/327 (7%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 +V + K+ + + W P EV + D ++ L + E+ + Sbjct: 18 MFFGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSTDRKDFQ---RLEEHEQHIF 74 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II ++ D Sbjct: 75 LSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDP 134 Query: 143 GELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTGTKD------------ADQEF 185 ++F+ IT +A+ +Y L + GT D ++ Sbjct: 135 TKIFDDIVTNEEITKRADSVSKYYDRLIEMVNLYNTMGMGTFDVPGRGSIEISMPKLKKA 194 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L V E + FY FA + M G A+ + I RDE+LHL ++N + Sbjct: 195 LYLTIASVNVLEAIRFYVSFACSFAFAERTLMEGNAKIIKLIARDEALHLTGTQHMLNLM 254 Query: 246 --KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIA 300 ++P + E Q + R + EA E +A G +GLNA QY+++I Sbjct: 255 ASGKDDPEMAVIAAECQDEVRQIFIEAAEQEKEWATYLFKDGSMIGLNAQILGQYVEYIT 314 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVI 327 N R +GLE F NP PW++ + Sbjct: 315 NVRMQAVGLETCFATKHNPIPWINAWL 341 >gi|297250515|ref|ZP_06864465.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria polysaccharea ATCC 43768] gi|296838835|gb|EFH22773.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria polysaccharea ATCC 43768] Length = 377 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 329 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 330 NQNPIPWINAWLSSD 344 >gi|212638239|ref|YP_002314759.1| ribonucleotide-diphosphate reductase subunit beta [Anoxybacillus flavithermus WK1] gi|212559719|gb|ACJ32774.1| Ribonucleotide reductase, beta subunit [Anoxybacillus flavithermus WK1] Length = 345 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 76/342 (22%), Positives = 142/342 (41%), Gaps = 19/342 (5%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 N + S + +KY ++ Y N W P E+ M DD+ W L Sbjct: 12 SHPNKATSIINGKASGILNWNDIKYSHFYDIYKMLLGNFWTPFEINMSDDIKQWH---AL 68 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 ++ ER +G + +S V N + A+ ++++P + +E VH+ ++ Y+ Sbjct: 69 SERERDAFLHIIGLLSILDS-VQPNFIGAMKEYITDPSVKAIFSIIEQQEVVHNQSYSYV 127 Query: 135 ITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 + S+ ++ F M R P I + ++ + + E V Sbjct: 128 LASIEKLSEQHRAFEMARTNPHIYKRNEHVIRVYEAFR--------EQPTVETFCRALVA 179 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 +V EG+ FY+GFA +L R KM+ + YI +DE H F ++ + ENP + Sbjct: 180 SLVLEGINFYSGFAFFYNLARNQKMLKTSTMISYINKDELCHSYFISQLVRAVLWENPQI 239 Query: 253 -WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 F + EA E ++ + + G++ E+Y++++ N+R +GL+ Sbjct: 240 DENGAFSAWIYDYIDEAIRYETEWSRFVL-RDIDGIDVIEMEKYIEYLGNKRLRMLGLDD 298 Query: 312 LFKYTENPFPWMSEVIDLK---KEKNFFETRVTEYQQGAELK 350 + EN PW+ D + +FFE R Y + ++ Sbjct: 299 RYDADENSMPWIRVFSDENVNLGKTDFFEARPRSYTKTTDVN 340 >gi|161870162|ref|YP_001599332.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis 053442] gi|161595715|gb|ABX73375.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis 053442] Length = 384 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 216 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ E Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 276 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 277 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 337 NQNPIPWINAWLSSD 351 >gi|308049658|ref|YP_003913224.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Ferrimonas balearica DSM 9799] gi|307631848|gb|ADN76150.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Ferrimonas balearica DSM 9799] Length = 378 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 83/335 (24%), Positives = 134/335 (40%), Gaps = 25/335 (7%) Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + + M +V + K+ + + W P EV + D + N L D Sbjct: 14 DALKEPMFLGNPVNVARYDQQKHRIFEDLIEKQLSFFWRPEEVDVTQDRIDY---NALPD 70 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II Sbjct: 71 HEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFYETIHSRSYTHIIR 130 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--------- 182 ++ D G +F+ I +A+ QY L + F GT D + Sbjct: 131 NIVNDPGVVFDDIVVNEEIQKRASDISQYYDDLIHTTQLYQQFGEGTHDINGNKVTLTLR 190 Query: 183 --QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 ++ L + V E + FY FA + M G A+ ++I RDE LHL Sbjct: 191 GLKKKLYLCLMSVNVLEAVRFYVSFACSFAFAERKLMEGNAKIIRFIARDEQLHLVGTQH 250 Query: 241 VINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295 +IN + E + + A E A+A G +GLN E Y Sbjct: 251 MINLMADGRDDPEMAEIAIECHSESIEIFRRAAEQEKAWASYLFKDGSMLGLNKQIIEDY 310 Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 ++FI N R IGL PLF NP PWMS ++ Sbjct: 311 VEFITNERMAGIGLPPLFDKRSNPLPWMSTWLESD 345 >gi|190896544|gb|ACE96785.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|260426338|ref|ZP_05780317.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp. SE45] gi|260420830|gb|EEX14081.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp. SE45] Length = 324 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 71/333 (21%), Positives = 121/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 15 NWNRLQDDKDLEVWN---RLTVNFWLPEKVPLSNDVPSWAT---LTPEEQRLTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A+ P L AF EAVH+ ++ I ++L E F Sbjct: 69 TLLDTIQNAVGAPAMMPDAQTPHEEAVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P + AKA L GT + L+ V E FY+GF Sbjct: 129 WSDENPHLQAKARAIL-------------GTYAPGADPLKRKV-ASVFLESFLFYSGFYL 174 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 175 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRAMERETAERRQELKDYAFGLLFE 234 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 +E Y E + + ++ + AN+ +G E LF NP + Sbjct: 235 LYEIEGHYTEELYDDLGL---TEEVKSFLHYNANKALQNLGFEALFPPEACEVNPAILAA 291 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 D + +FF + Y G + WD Sbjct: 292 LSPDSE-NHDFFSGSGSSYVIGRAVATEDDDWD 323 >gi|4389292|pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a gi|40889714|pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of Ribonucleotide Reductase gi|40889715|pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of Ribonucleotide Reductase Length = 375 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 64 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 F +II ++ D +F+ I +A Y L + GT + Sbjct: 122 FTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RD +LH Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDAALH 241 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361 Query: 346 GAELKWD 352 +E+ D Sbjct: 362 DSEVDTD 368 >gi|21959884|gb|AAM86526.1|AE013899_3 ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Yersinia pestis KIM 10] gi|45435621|gb|AAS61179.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Microtus str. 91001] Length = 391 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 137/347 (39%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ +V + K+ + + W P E+ + Sbjct: 25 KNNQLLEPMFFGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 71 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + N L D E+ + NL + +S+ + +A+ +S PE ++ + Sbjct: 72 SRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 128 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 129 FSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 188 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 189 GTHQVNGKTVVVKLRDLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 248 Query: 226 YIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N +++ ++P + +E QQ+ + A E +A Sbjct: 249 MIARDEALHLTGTQHILNLMRLGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFR 308 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R +GL F NP PW++ + Sbjct: 309 DGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFSTRTNPIPWINSWL 355 >gi|90412217|ref|ZP_01220223.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium profundum 3TCK] gi|90326941|gb|EAS43326.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium profundum 3TCK] Length = 377 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 70/314 (22%), Positives = 131/314 (41%), Gaps = 28/314 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L + E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSGDRIDY---NNLPEHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I +A Sbjct: 92 PNVALLPIVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENDYIIKRA 151 Query: 160 NWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 +Y L + T ++ ++ + E + FY Sbjct: 152 GDISKYYDDLIAATSDYHRLGEGKHTVNGETITVNLREIKKKLYVCMMSVNA-LEAIRFY 210 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEFQ 258 FA + M G A+ + I RDE+LHL ++N + + ++P + +E Q Sbjct: 211 VSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILNLLRGRHDDPEMADIAQECQ 270 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316 Q+ + EA E +A G +GLN QY+++I N R +GL+ + Sbjct: 271 QECFEIFKEAAEQEKEWAEYLFKDGSMIGLNKEILCQYVEYITNLRMKAVGLDQAYPGAN 330 Query: 317 ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 331 QNPIPWINSWLSSD 344 >gi|309379219|emb|CBX22176.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 384 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 132/315 (41%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKLVNVSLRELKKKLYLCLMCVNVLEAIRF 216 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + +E Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAEEL 276 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q++ + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 277 QEECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 337 NQNPIPWINAWLSSD 351 >gi|254805092|ref|YP_003083313.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha14] gi|254668634|emb|CBA06257.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha14] Length = 384 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRF 216 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ E Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 276 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 277 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 337 NQNPIPWINAWLSSD 351 >gi|319410557|emb|CBY90925.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide reductase) [Neisseria meningitidis WUE 2594] gi|325208250|gb|ADZ03702.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis NZ-05/33] Length = 384 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRF 216 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ E Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 276 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 277 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 337 NQNPIPWINAWLSSD 351 >gi|300717619|ref|YP_003742422.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia billingiae Eb661] gi|299063455|emb|CAX60575.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia billingiae Eb661] Length = 376 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 77/338 (22%), Positives = 139/338 (41%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K +D+ +V + KY + + W P EV + D ++ Sbjct: 6 FSQNKNNQLDEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 GL D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --GLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I ++A Y L + GT + Sbjct: 123 YTHIIRNIVNDPAIVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGEGTHQVNGKS 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 ITINLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + A E +A G +GLN Sbjct: 243 LTGTQHMLNLLRSGEDDPEMAEIARESRQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R H +GL+ FK NP PW++ + Sbjct: 303 DILCQYIEYITNIRMHAVGLDLPFKTRSNPIPWINSWL 340 >gi|190896564|gb|ACE96795.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|308389409|gb|ADO31729.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis alpha710] Length = 384 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRF 216 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ E Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 276 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 277 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 337 NQNPIPWINAWLSSD 351 >gi|212635281|ref|YP_002311806.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella piezotolerans WP3] gi|212556765|gb|ACJ29219.1| Ribonucleoside-diphosphate reductase, beta subunit [Shewanella piezotolerans WP3] Length = 376 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 86/349 (24%), Positives = 138/349 (39%), Gaps = 37/349 (10%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NN L P+ G+ VNV AR D KY + + W P EV + Sbjct: 11 NNAMLEPMFLGQS-VNV-------ARYDQQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + S L E+ + NL + +S+ + +A +S PE ++ +F Sbjct: 58 KDKIDYAS---LPAHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL------------- 169 E +HS ++ +II ++ D +F+ E I +A Y L Sbjct: 115 SETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILKRATDIAAYYDKLIRLSQACQLLGEG 174 Query: 170 ---SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 TK ++ L V V E + FY FA + N M G A+ + Sbjct: 175 SHQIDGEVVEVTKREIKKALYLCMVSVNVLEAIRFYVSFACSFAFAERNVMEGNAKIIRL 234 Query: 227 IMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I RDE+LHLN ++ + ++P + KE +Q + + +A E +A Sbjct: 235 IARDEALHLNSTQHILKIMHAGKDDPEMAEIAKECEQTAIDIFVKAAEQEKEWAKYLFKD 294 Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 G +GLN QY+++I N R + LE + NP PWM ++ Sbjct: 295 GSMIGLNEQILCQYVEYITNERMKAVNLESPYAEQSNPLPWMKNWLESD 343 >gi|325963521|ref|YP_004241427.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323469608|gb|ADX73293.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 324 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 124/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W NN W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRIQDDKDVDVWN---RLVNNFWLPEKVPLSNDVQSWNT---LTPAEQQLTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + E F Sbjct: 69 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA + Y Q + V + E FY+GF Sbjct: 129 WSTENENLQKKAQIVMDYYQ---------------GDDPLKRKVASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 174 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLEAVSPERRQEIKDYTFELLFE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 E+ Y H+ + A ++++ + AN+ +G E +F + NP + Sbjct: 234 LYENEVQYTHDLYDGVGL---AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323 >gi|161353784|ref|NP_274308.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis MC58] gi|304387414|ref|ZP_07369605.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria meningitidis ATCC 13091] gi|304338507|gb|EFM04626.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria meningitidis ATCC 13091] gi|316984078|gb|EFV63056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Neisseria meningitidis H44/76] gi|325134468|gb|EGC57113.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M13399] gi|325140485|gb|EGC63006.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis CU385] gi|325144569|gb|EGC66868.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M01-240013] gi|325200084|gb|ADY95539.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis H44/76] gi|325204292|gb|ADY99745.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M01-240355] gi|325205936|gb|ADZ01389.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M04-240196] Length = 377 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 329 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 330 NQNPIPWINAWLSSD 344 >gi|262402402|ref|ZP_06078963.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. RC586] gi|262351184|gb|EEZ00317.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. RC586] Length = 360 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 16 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 72 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 73 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHILK 132 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWF 201 +A Y L + + G + E + + E + F Sbjct: 133 RAKDIAHYYDDLIQLTNDYHRYGEGQHQINGETVNVSLKNLKKKLYLCLMSVNALEAIRF 192 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ +E Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEEC 252 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315 +Q+S + EA E +A G +GLN QY+++I N R +GLEP + Sbjct: 253 KQESFDLFKEAAEQEKEWAAYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPTA 312 Query: 316 TENPFPWMSEVIDLK 330 T NP PW++ + Sbjct: 313 TTNPIPWINAWLSSD 327 >gi|238897538|ref|YP_002923217.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465295|gb|ACQ67069.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 376 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 80/347 (23%), Positives = 140/347 (40%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ VNV AR D KY E + W P E+ + Sbjct: 10 KNNQLLEPMFLGQT-VNV-------ARYDQQ-----KYPIFEELIEKQLSFFWRPEEIDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++S L + E+ + NL + +S+ + +A+ +S PE ++ A Sbjct: 57 SRDRIDYQS---LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWA 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSCIFDDIVTNNEILKRAKDISAYYDDLIKMTSYYHLLDE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 174 GTHQVNGKTTVVNLYALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIK 233 Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL +++ ++ ++P + +E QQ+ + A E +A Sbjct: 234 LIARDEALHLMGTQHMLDLMRSGKDDPEMADIAQECQQECSDLFLLAAQQEKEWAAYLFR 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY++++ N R + L+ F NP PW++ + Sbjct: 294 DGSMIGLNQDILCQYIEYMTNIRMQAVKLDAPFSIRTNPIPWINSWL 340 >gi|21233407|ref|NP_639324.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21115247|gb|AAM43206.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 347 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 19/348 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLERIKILEPRHPNRSTAIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ D+ +F + R P+I + + +D Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDD--------FMRD 170 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA +L R N+M G + +I RDE H F + Sbjct: 171 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I EN L + A LE + E + G G++ +Y+++ A Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 289 Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 N+ +G+E L++ +N PW+ D + + +FFE R Y++ Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337 >gi|332162349|ref|YP_004298926.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606422|emb|CBY27920.1| ribonucleotide reductase of class Ia (aerobic),beta subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|325666579|gb|ADZ43223.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864218|emb|CBX74276.1| ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia enterocolitica W22703] Length = 376 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 136/347 (39%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ +V + K+ + + W P E+ + Sbjct: 10 KNNQLLEPMFFGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + N L D E+ + NL + +S+ + +A+ +S PE ++ + Sbjct: 57 SRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 174 GTHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233 Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ ++P + +E QQ+ + A E +A Sbjct: 234 MIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFR 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R +GL F NP PW++ + Sbjct: 294 DGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTRTNPIPWINSWL 340 >gi|326782933|ref|YP_004323331.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4] gi|310004192|gb|ADO98586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4] Length = 388 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 86/359 (23%), Positives = 149/359 (41%), Gaps = 28/359 (7%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + +VN + M + V + KY S W P EV +Q D + +++ Sbjct: 18 KNKVNTKKQPMFFGQPLGVQRYDEYKYPVFDRLTQSQLGYFWRPEEVSLQKDRSDYQT-- 75 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT +++ + NL + +S+ +A + S PE + F E +HS ++ Sbjct: 76 -LTPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHSRSYT 134 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT---------------TG 177 YII ++ D E+F+ + ++ ++A+ + + + TG Sbjct: 135 YIIKNVYPDPSEVFDTILDDENVMSRASSVTKSYDEFINSAHEFDNCQTWDLARQGHLTG 194 Query: 178 TKDAD--QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 T + + L + EG+ FY FA + G M G A+ I RDES HL Sbjct: 195 TYERKELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDESQHL 254 Query: 236 NFGIDVI-NQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291 +++ N K ++ + KE + M E +A+ +G +GLN Sbjct: 255 VITQNILKNWAKGDDSEMAEIAKEEKPFVVDMFKRTVEEEKTWANYLFREGSMIGLNDRL 314 Query: 292 CEQYMQFIANRRCHQIGLEPLFK--YTENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347 Y+++IANRR IGL+P+F NP PW ++ K ++N ET + Y G Sbjct: 315 LHNYVEWIANRRMKAIGLDPVFDQVARNNPLPWTQHWLNSKGQQNAPQETEIESYVVGG 373 >gi|270262779|ref|ZP_06191050.1| ribonucleoside-diphosphate reductase 1 subunit beta [Serratia odorifera 4Rx13] gi|270043463|gb|EFA16556.1| ribonucleoside-diphosphate reductase 1 subunit beta [Serratia odorifera 4Rx13] Length = 359 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 128/315 (40%), Gaps = 25/315 (7%) Query: 35 LPLKYGWAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + +EK + + W P EV + D ++ L + E+ + NL + + Sbjct: 12 FDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLD 68 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 S+ + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ Sbjct: 69 SIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPALVFDDIVTNE 128 Query: 154 SITAKANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFE 197 I +A Y L + GT + ++ L + E Sbjct: 129 EILKRAKDISGYYDDLIEMTGYYHLLGEGTHQVNGKTVTVNLRALKKQLYICLMSVNALE 188 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--W 253 + FY FA + M G A+ + I RDE+LHL ++N ++ ++P + Sbjct: 189 AIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILNLMRSGADDPEMAEI 248 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 E QQ+ + A E +A G +GLN QY+++I N R +GL Sbjct: 249 AVECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLGLP 308 Query: 313 FKYTENPFPWMSEVI 327 F+ NP PW++ + Sbjct: 309 FETRSNPIPWINAWL 323 >gi|66770372|ref|YP_245134.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. campestris str. 8004] gi|188993572|ref|YP_001905582.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. campestris str. B100] gi|66575704|gb|AAY51114.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. campestris str. 8004] gi|167735332|emb|CAP53546.1| Ribonucleoside-diphosphate reductase beta chain [Xanthomonas campestris pv. campestris] Length = 347 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 145/348 (41%), Gaps = 19/348 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N + + + Y + Y N W+P EV M+ Sbjct: 3 ATPLERIKILEPRHPNRSTAIINGSTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ D+ +F + R P+I + + +D Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDD--------FMRD 170 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA +L R N+M G + +I RDE H F + Sbjct: 171 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I EN L + A LE + E + G G++ +Y+++ A Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 289 Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 N+ +G+E L++ +N PW+ D + + +FFE R Y++ Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337 >gi|271499642|ref|YP_003332667.1| ribonucleotide reductase [Dickeya dadantii Ech586] gi|270343197|gb|ACZ75962.1| ribonucleotide reductase [Dickeya dadantii Ech586] Length = 376 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 137/340 (40%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A + L + GT + ++ L + E + F Sbjct: 150 RAKDISGFYDELIELTSYYHLLGEGTHQINSKTVTVNLYELKKKLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + +E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRAGQDDPEMAQIAEEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ+ + A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLPLPFETR 329 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PW++ + + E V+ Y Q +E+ D Sbjct: 330 TNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSEINTD 369 >gi|261364564|ref|ZP_05977447.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria mucosa ATCC 25996] gi|288567131|gb|EFC88691.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria mucosa ATCC 25996] Length = 384 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 128/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 156 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201 +A Y L + GT + ++ L + V E + F Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 216 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EF 257 Y FA + M G A+ + I RDE+LHL ++N ++ + E Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGSDDPEMAEIAVEL 276 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY- 315 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 277 QDECFELFKKAAEQEKEWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGA 336 Query: 316 TENPFPWMSEVIDLK 330 T+NP PW++ + Sbjct: 337 TQNPIPWINAWLSSD 351 >gi|109287926|ref|YP_654620.1| hypothetical protein MIV048L [Invertebrate iridescent virus 3] gi|123878658|sp|Q197B2|RIR2_IIV3 RecName: Full=Probable ribonucleoside-diphosphate reductase small subunit 048L; AltName: Full=Ribonucleotide reductase small subunit gi|106073549|gb|ABF82078.1| hypothetical protein MIV048L [Aedes taeniorhynchus iridescent virus] Length = 376 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 74/326 (22%), Positives = 144/326 (44%), Gaps = 11/326 (3%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 +D P +Y ++K+ + + HW E+ MQDD+ W N L++ E+ + + L F Sbjct: 48 ADRTTFKPFEYPGCYDKWDTHEHAHWSFKELNMQDDVHDWH--NRLSEAEKTFLVQILRF 105 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 F + VA + + PE R L EA+H ++ ++I++L L + Sbjct: 106 FTQGDVDVA-VGYVQYLQLFQQPEVRMMLFSFGAREAMHIASYSHLISTLNL-PDVTYQE 163 Query: 149 YREVPSITAKANWALQYTQTLSS-----PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 + + ++ K + ++ G +E + +F EG+ ++ Sbjct: 164 FLKYKAMKDKHEFVFNSRFKSTTVGRFFNYLLFGYDTHLEEIAVKIALFSAFIEGVQLFS 223 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN-PHLWTKEFQQKSR 262 F +L+ R M + + Q+ + DE+ H N +++ + + +EN H+ + + R Sbjct: 224 SFIMLLNFTRHGLMKKMGQIIQWSIADETHHTNSMMELFSTLVVENKSHIRLGVLEARVR 283 Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 + LE + G L A + Y+++I NRR +G PL+ ENP P Sbjct: 284 DTARKIVQLEDGFIDLAFSMGEMRQLTADDVKSYIRYITNRRLQTMGYLPLYSVVENPLP 343 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA 347 W+ ++++ NFFE + TEY + + Sbjct: 344 WVEDLLNAPSHTNFFENKPTEYAKAS 369 >gi|332141553|ref|YP_004427291.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas macleodii str. 'Deep ecotype'] gi|327551575|gb|AEA98293.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas macleodii str. 'Deep ecotype'] Length = 376 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 131/314 (41%), Gaps = 24/314 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ LTD E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQISFFWRPEEVDVSRDRVDFQ---KLTDPEKHIFISNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +I+ +L D E+F I Sbjct: 90 RSPNIAFLPIISLPELETWVETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVVNDEIKR 149 Query: 158 KANWALQYTQTLS----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 +A +Y L + + T ++ L E + F Sbjct: 150 RAADISKYYDDLIFATQLWQTQGEGVHTVNGTAYTINMYELKKKLYLCMNSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEF 257 Y FA + M G ++ + I RDE+LHL+ ++N ++P + +E Sbjct: 210 YVSFACTFAFAERKLMEGNSKIIRLIARDENLHLSSTQHILNLWAKGKDDPEMAQIAQEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++++R + A E +A G +GLN QY+++IAN+R IGL+ F + Sbjct: 270 KEEARAIFMNAVEQEKEWADYLFKTGSMIGLNKEILCQYVEYIANQRMSAIGLDTPFDIS 329 Query: 317 ENPFPWMSEVIDLK 330 NP PWM+ ++ Sbjct: 330 SNPLPWMNNYLNSD 343 >gi|218768312|ref|YP_002342824.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis Z2491] gi|121052320|emb|CAM08650.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis Z2491] gi|261392428|emb|CAX49973.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide reductase) [Neisseria meningitidis 8013] Length = 377 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 329 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 330 NQNPIPWINAWLSSD 344 >gi|217973230|ref|YP_002357981.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella baltica OS223] gi|304408853|ref|ZP_07390474.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS183] gi|307302856|ref|ZP_07582611.1| Ribonucleoside-diphosphate reductase [Shewanella baltica BA175] gi|217498365|gb|ACK46558.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS223] gi|304352674|gb|EFM17071.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS183] gi|306913216|gb|EFN43638.1| Ribonucleoside-diphosphate reductase [Shewanella baltica BA175] gi|315267707|gb|ADT94560.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS678] Length = 376 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 136/340 (40%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I + Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILS 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + GT D ++ L + E + F Sbjct: 150 RATDIAAYYDHLIQLTQVFHLLGAGTHVIDGKEVIVNTRTLKKALYLCMMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHLN +++ ++ ++P + E Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILSIMQGGKDDPEMGEIAAEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ++ + +A E +A G +GLN QY++FI N+R + L + Sbjct: 270 QQEAFDLFFKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYPEI 329 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PWM ++ + E V+ Y Q + + D Sbjct: 330 TNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDGD 369 >gi|312885176|ref|ZP_07744856.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] gi|309367189|gb|EFP94761.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio caribbenthicus ATCC BAA-2122] Length = 377 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 133/342 (38%), Gaps = 25/342 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNRTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDF-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTK------ 179 + +II ++ D G +F+ E I +A Y L + + G Sbjct: 123 YTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDLIQLTNDYHRYGEGKHVIGGEE 182 Query: 180 -----DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VNVSLHNLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L +IN ++ +E +Q+ + +A E +A G +GLN Sbjct: 243 LTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKDAAEQEKEWAEYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330 QY+++I N R +GL+ + T NP PW++ + Sbjct: 303 DILSQYVEYITNIRMQAVGLDAAYPEATSNPIPWINAWLSSD 344 >gi|121635003|ref|YP_975248.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria meningitidis FAM18] gi|120866709|emb|CAM10461.1| ribonucleoside diphosphate reductase I beta chain [Neisseria meningitidis FAM18] gi|325128288|gb|EGC51172.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis N1568] gi|325130346|gb|EGC53112.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis OX99.30304] gi|325132508|gb|EGC55201.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M6190] gi|325136206|gb|EGC58814.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M0579] gi|325138282|gb|EGC60851.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis ES14902] gi|325142424|gb|EGC64828.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis 961-5945] gi|325198443|gb|ADY93899.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis G2136] gi|325201998|gb|ADY97452.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria meningitidis M01-240149] Length = 377 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 329 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 330 NQNPIPWINAWLSSD 344 >gi|238750475|ref|ZP_04611976.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei ATCC 43380] gi|238711406|gb|EEQ03623.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei ATCC 43380] Length = 323 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 62/330 (18%), Positives = 127/330 (38%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D + + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + KA+ LQ+ +++ L+ V E FY+GF + Sbjct: 131 ENGPLQKKADIILQHYH--------------NEDPLKKKI-ASVFLESFLFYSGFYLPMY 175 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + + +E + + +L + Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNNRRQEIKNFAFDLLQDLYD 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E+ Y + K VG + ++ + AN+ +G E LF + NP + Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKSFLHYNANKALMNLGYEALFPANQAEVNPAILAALSP 292 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 NADENHDFFSGSGSSYVIGKAVITEDEDWD 322 >gi|317130866|ref|YP_004097148.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522] gi|315475814|gb|ADU32417.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522] Length = 345 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 75/335 (22%), Positives = 159/335 (47%), Gaps = 16/335 (4%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + + S+V +++ WA+ Y + N W P E+ M +D+ + + L Sbjct: 16 NASTRIINGESSNVLNWDDVRFKWAYPLYKNMLANFWTPFEINMGNDVKQY---DKLEPK 72 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER + +G A +S+ + + + R+L++ + +F+E VH+ ++ Y+++S Sbjct: 73 EREAFDKIIGLLAFLDSIQTD-YSMHVARYLTDSSLSALMTVLSFQEVVHNQSYSYVLSS 131 Query: 138 LGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 L + E+F ++ + + ++ + + S + E V+ ++ Sbjct: 132 LTTKAKQDEIFEYWKHDKVLRERNDFIAEGYEAFVS--------NPTPETFLHSIVYDII 183 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG+ FY+GF+ +L R KMV + YI RDE H+ ++ ++ E P L ++ Sbjct: 184 LEGLNFYSGFSFFYNLARNQKMVSTSTMINYINRDEQHHVYLFANIFKELMHEYPELNSE 243 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK- 314 + + + + LEI +A + G++ E Y++F+AN+R +++G+E F+ Sbjct: 244 KTHRFVQETFKKGAELEINWAKYIIGDQMEGIDIGDLEAYIKFMANKRVNELGVERPFEG 303 Query: 315 YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAE 348 Y NP W+ D+ + +FFE + +Y + ++ Sbjct: 304 YRNNPMRWIKIYEDVNSGKTDFFEQKSRQYTKVSD 338 >gi|220912864|ref|YP_002488173.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter chlorophenolicus A6] gi|219859742|gb|ACL40084.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus A6] Length = 324 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 124/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W NN W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRIQDDKDVDVWN---RLVNNFWLPEKVPLSNDVQSWNT---LTPVEQQLTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + E F Sbjct: 69 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA + Y Q + V + E FY+GF Sbjct: 129 WSTENENLQKKAQIVMDYYQ---------------GDDPLKRKVASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 174 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALETVSEERRQEIKDYTFELLFE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 E+ Y H+ + A ++++ + AN+ +G E +F + NP + Sbjct: 234 LYENEVQYTHDLYDGVGL---AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323 >gi|145298925|ref|YP_001141766.1| ribonucleotide-diphosphate reductase subunit beta [Aeromonas salmonicida subsp. salmonicida A449] gi|142851697|gb|ABO90018.1| ribonucleoside-diphosphate reductase, beta subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 377 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 135/329 (41%), Gaps = 26/329 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + W P EV + D ++ L E+ + NL + +S+ Sbjct: 33 KHEVFERLIEKQLSFFWRPEEVDVSHDRIDYQ---ALPPHEQHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ + G++F+ I Sbjct: 90 RSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIVNNPGQVFDDIVTNEQILK 149 Query: 158 KANWALQYTQTLSSPS----------------FTTGTKDADQEFLQDLFVFYVVFEGMWF 201 +A + L + T T ++ L + E + F Sbjct: 150 RAGSISCFYDDLIEATALYNLHGEGTHSVAGQMRTITLRELKKKLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + + E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHMLNLMRTGQDDPEMAEISAEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q + EA + E +A G +GLN QY+++I N R + +GL+P F Sbjct: 270 EQACFEIFKEAAIQEKEWAEYLFQDGSMIGLNKDILCQYVEYITNLRMNAVGLQPAFAGA 329 Query: 317 E-NPFPWMSEVIDLKKEKNF-FETRVTEY 343 + NP PW++ + + E V+ Y Sbjct: 330 KQNPIPWINTWLSSDNVQVAPQEVEVSSY 358 >gi|121590730|ref|ZP_01678061.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 2740-80] gi|147674333|ref|YP_001216820.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae O395] gi|153212320|ref|ZP_01948108.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 1587] gi|153801907|ref|ZP_01956493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-3] gi|153823603|ref|ZP_01976270.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae B33] gi|153827294|ref|ZP_01979961.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-2] gi|153829732|ref|ZP_01982399.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 623-39] gi|227081427|ref|YP_002809978.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae M66-2] gi|254291706|ref|ZP_04962493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae AM-19226] gi|254848379|ref|ZP_05237729.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10] gi|297578847|ref|ZP_06940775.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae RC385] gi|298498653|ref|ZP_07008460.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MAK 757] gi|9655738|gb|AAF94414.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547411|gb|EAX57522.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 2740-80] gi|124116698|gb|EAY35518.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 1587] gi|124122552|gb|EAY41295.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-3] gi|126518882|gb|EAZ76105.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae B33] gi|146316216|gb|ABQ20755.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae O395] gi|148874766|gb|EDL72901.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae 623-39] gi|149738785|gb|EDM53127.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MZO-2] gi|150422390|gb|EDN14350.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae AM-19226] gi|227009315|gb|ACP05527.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae M66-2] gi|227013172|gb|ACP09382.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae O395] gi|254844084|gb|EET22498.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10] gi|297536441|gb|EFH75274.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae RC385] gi|297542986|gb|EFH79036.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae MAK 757] Length = 389 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 45 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 101 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 102 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 161 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWF 201 +A Y L + + G + E + + E + F Sbjct: 162 RAKDIAHYYDDLIELTNDYHRYGEGQHQINGETITVSLKELKKKLYLCLMSVNALEAIRF 221 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ +E Sbjct: 222 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEEC 281 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315 +Q+S + EA E +A G +GLN QY+++I N R +GLEP + Sbjct: 282 KQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAA 341 Query: 316 TENPFPWMSEVIDLK 330 T NP PW++ + Sbjct: 342 TNNPIPWINAWLSSD 356 >gi|88608725|ref|YP_506404.1| ribonucleotide-diphosphate reductase subunit beta [Neorickettsia sennetsu str. Miyayama] gi|88600894|gb|ABD46362.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia sennetsu str. Miyayama] Length = 322 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 18/324 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y WA++ + HW+P E+PM DD+ W K T E+ ++ + FF Sbjct: 7 RLSYKPFQYDWAYQAWEIQQKIHWLPEEIPMADDVQDWHHKICGT--EKNLLTQIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 ++ V + + PE L A E +H + +++ ++G+ E E + + Sbjct: 65 QADVEVHDCYMRHYAGVFKPPEVCMMLTAFANMETIHIAAYAHLLDTVGMPETE-YLAFT 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + K + D E + L V+ EG+ + FA +L+ Sbjct: 124 KYKQMKEKCEYL------------KAFKMDNPTEIAKTLAVYGAFTEGLQLFASFAILLN 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 R NKM G+ + Y +RDE+LH N + +EN K + + R + + Sbjct: 172 FPRFNKMKGMGQIIAYSVRDETLHSNSITKLFRTFLLENNIDKFK-LEAEIREICNAMVH 230 Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 E A+ G V L A ++Y+++IAN R Q+G +++ NP W+ V++ Sbjct: 231 HEDAFIDLAFEMGDVEGLKASEVKEYIRYIANLRLKQLGFSEIYEQKVNPLLWLEAVLNT 290 Query: 330 KKEKNFFETRVTEYQQGA-ELKWD 352 + NFFE + TEY + A + WD Sbjct: 291 VEHTNFFENKATEYSKAATKGTWD 314 >gi|54309624|ref|YP_130644.1| ribonucleotide-diphosphate reductase subunit beta [Photobacterium profundum SS9] gi|46914062|emb|CAG20842.1| putative ribonucleoside-diphosphate reductase,beta subunit [Photobacterium profundum SS9] Length = 377 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 131/314 (41%), Gaps = 28/314 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L D E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSGDRIDY---NNLPDHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I +A Sbjct: 92 PNVALLPIVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVENEYIIKRA 151 Query: 160 NWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 +Y L + T ++ ++ + E + FY Sbjct: 152 GDISKYYDDLIAATSDYHRLGEGKHTVNGETITVNLREIKKKLYVCMMSVNA-LEAIRFY 210 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEFQ 258 FA + M G A+ + I RDE+LHL ++N + + ++P + +E Q Sbjct: 211 VSFACSFAFAEREVMEGNAKIIKLIARDEALHLTGTQHILNLLRGRHDDPEMADIAQECQ 270 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316 Q+ + EA E +A G +GLN QY+++I N R +GLE + Sbjct: 271 QECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKEILCQYVEYITNLRMKAVGLEQAYPGAN 330 Query: 317 ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 331 QNPIPWINSWLSSD 344 >gi|325914792|ref|ZP_08177129.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria ATCC 35937] gi|325538985|gb|EGD10644.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria ATCC 35937] Length = 349 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 5 ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 65 GDARQY---NELSSREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ D+ +F + R P+I + + + +D Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRD 172 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA +L R N+M G + +I RDE H F + Sbjct: 173 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 232 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I EN L + A LE + E + G G++ +Y+++ A Sbjct: 233 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 291 Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 N+ +G+E L++ +N PW+ D + + +FFE R Y++ Sbjct: 292 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 339 >gi|123441721|ref|YP_001005705.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088682|emb|CAL11484.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 376 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 136/347 (39%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ +V + K+ + + W P E+ + Sbjct: 10 KNNQLLEPMFFGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + N L D E+ + NL + +S+ + +A+ +S PE ++ + Sbjct: 57 SRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 174 GTHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233 Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ ++P + +E QQ+ + A E +A Sbjct: 234 MIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFR 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R +GL F NP PW++ + Sbjct: 294 DGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFNTRTNPIPWINSWL 340 >gi|229505158|ref|ZP_04394668.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae BX 330286] gi|229511170|ref|ZP_04400649.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae B33] gi|229515628|ref|ZP_04405087.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TMA 21] gi|229518289|ref|ZP_04407733.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC9] gi|229521368|ref|ZP_04410787.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TM 11079-80] gi|229525854|ref|ZP_04415259.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae bv. albensis VL426] gi|229529665|ref|ZP_04419055.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae 12129(1)] gi|229608178|ref|YP_002878826.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae MJ-1236] gi|229333439|gb|EEN98925.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae 12129(1)] gi|229339435|gb|EEO04452.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae bv. albensis VL426] gi|229341466|gb|EEO06469.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TM 11079-80] gi|229345004|gb|EEO09978.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC9] gi|229347397|gb|EEO12357.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae TMA 21] gi|229351135|gb|EEO16076.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae B33] gi|229357381|gb|EEO22298.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae BX 330286] gi|229370833|gb|ACQ61256.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae MJ-1236] Length = 381 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 37 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 93 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 94 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 153 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWF 201 +A Y L + + G + E + + E + F Sbjct: 154 RAKDIAHYYDDLIELTNDYHRYGEGQHQINGETITVSLKELKKKLYLCLMSVNALEAIRF 213 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ +E Sbjct: 214 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEEC 273 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315 +Q+S + EA E +A G +GLN QY+++I N R +GLEP + Sbjct: 274 KQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAA 333 Query: 316 TENPFPWMSEVIDLK 330 T NP PW++ + Sbjct: 334 TNNPIPWINAWLSSD 348 >gi|190896510|gb|ACE96768.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896556|gb|ACE96791.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896562|gb|ACE96794.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|166710317|ref|ZP_02241524.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas oryzae pv. oryzicola BLS256] Length = 347 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLDRIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ D+ +F + R P+I + + + ++ Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRE 170 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA +L R N+M G + +I RDE H F + Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I EN L E A LE + E + G G++ +Y+++ A Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAINLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289 Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 N+ +G+E L++ +N PW+ D + + +FFE R Y++ Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337 >gi|317164437|gb|ADV07978.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria gonorrhoeae TCDC-NG08107] Length = 377 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 90 RSPNVALLPLVSIPELETWVETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPVTVSLRGLKKKLYLCLMCVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDPEMAEIAAEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLSAGFEGA 329 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 330 NQNPIPWINAWLSSD 344 >gi|322692090|ref|YP_004221660.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|320456946|dbj|BAJ67568.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. longum JCM 1217] Length = 330 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 63/351 (17%), Positives = 132/351 (37%), Gaps = 32/351 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI K + + D+ + ++ N+L K W+ N W+P +VP+ +D+ Sbjct: 1 MAPISIPRKPLKLIDRV---SATNWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ +T+DE + R +++ +++ P AF E+V Sbjct: 55 SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++ I ++L E F+ + KA L Y + D Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYY-------------EGDNP 158 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + + + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 159 YKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + + Q + +L+E E+ Y + + E+++++ N+ Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDRVGL---TDDVEKFLRYNGNKAL 273 Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +G LF NP + + + +FF + Y G + D Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324 >gi|238753722|ref|ZP_04615083.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia ruckeri ATCC 29473] gi|238707958|gb|EEQ00315.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia ruckeri ATCC 29473] Length = 376 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 131/347 (37%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ +V + K+ + + W P E+ + Sbjct: 10 KNNQLLEPMFLGQPV-------------NVARFDQQKFAIFEKLIEKQLSFFWRPEEIDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + N L + E+ + NL + +S+ + +A+ +S PE ++ + Sbjct: 57 SRDRIDY---NALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEEILKRAKDISSYYDDLIEMTSYYHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 G + ++ L + E + FY FA + M G A+ + Sbjct: 174 GNHQVNGKTVVVNLHALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ E QQ+ + A E +A Sbjct: 234 MIARDEALHLTGTQHILNLMRSGEDDPEMAEIAVECQQQCYDLFVLAAEQEKEWAEYLFR 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R +GL FK NP PW++ + Sbjct: 294 DGSMIGLNKEILCQYVEYITNIRMQAVGLGTPFKTRTNPIPWINAWL 340 >gi|153000811|ref|YP_001366492.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella baltica OS185] gi|160875520|ref|YP_001554836.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella baltica OS195] gi|151365429|gb|ABS08429.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS185] gi|160861042|gb|ABX49576.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS195] Length = 386 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 136/340 (40%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 43 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQG 99 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I + Sbjct: 100 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILS 159 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + GT D ++ L + E + F Sbjct: 160 RATDIAAYYDHLIQLTQVFHLLGAGTHVIDGKEVIVNTRTLKKALYLCMMSVNALEAIRF 219 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHLN +++ ++ ++P + E Sbjct: 220 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILSIMQGGKDDPEMGEIAAEC 279 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ++ + +A E +A G +GLN QY++FI N+R + L + Sbjct: 280 QQEAFDLFFKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYPEI 339 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PWM ++ + E V+ Y Q + + D Sbjct: 340 TNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDGD 379 >gi|289670858|ref|ZP_06491933.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 349 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 5 ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 65 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ D+ +F + R P+I + + + ++ Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRE 172 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA +L R N+M G + +I RDE H F + Sbjct: 173 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 232 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I EN L + A LE + E + G G++ +Y+++ A Sbjct: 233 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 291 Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 N+ +G+E L++ +N PW+ D + + +FFE R Y++ Sbjct: 292 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 339 >gi|296140644|ref|YP_003647887.1| ribonucleoside-diphosphate reductase [Tsukamurella paurometabola DSM 20162] gi|296028778|gb|ADG79548.1| Ribonucleoside-diphosphate reductase [Tsukamurella paurometabola DSM 20162] Length = 334 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 60/333 (18%), Positives = 122/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +D+ W + LTD E+ + R Sbjct: 25 NWNRVPDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTDYEKQLTMRVFTGL 78 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ + P L AF E+VH+ ++ I ++L + F Sbjct: 79 TLLDTIQGTVGAVSLIPDATTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTREIDDAFR 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA + + + + V + E FY+GF Sbjct: 139 WSEENEQLQRKAQIVMDFYR---------------GDDPLKRKVASTLLESFLFYSGFYL 183 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 184 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLETESPQRREELKDYTFDLLME 243 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + ++++++ AN+ +G E LF NP + Sbjct: 244 LYANEEDYTESLYDEVGLS---EDVKKFLRYNANKALMNLGYEALFPKDATDVNPAILSA 300 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 333 >gi|197284313|ref|YP_002150185.1| ribonucleotide-diphosphate reductase subunit beta [Proteus mirabilis HI4320] gi|194681800|emb|CAR41036.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis HI4320] Length = 322 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 64/336 (19%), Positives = 125/336 (37%), Gaps = 31/336 (9%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 +R + ++ E + N W+P ++P+ +D+ W + LT E+ + R Sbjct: 7 SRVNAINWNRIEDEKDLEVWNRLTMNFWLPEKIPLSNDIPSWNT---LTQAEKQLTIRVF 63 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGE 144 +++ + P L F EAVH+ ++ I ++L L D + Sbjct: 64 TGLTLLDTIQNTVGAPTLMPDAQTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDD 123 Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 + E + K++ L+Y Q D + L+ V E FY+G Sbjct: 124 AYRWSEENTYLQKKSDIILRYYQ--------------DSDPLKKKI-ASVFLESFLFYSG 168 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 F + K+ A+ + I+RDE++H + + L + + + ++ Sbjct: 169 FYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQNQLLNKSSLEKQNIKDFAFSL 228 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321 L + E+ Y + VG ++++ + AN+ +G E LF +P Sbjct: 229 LLDLYDNEVKYTEDLY--DSVGWT-EDVKKFLHYNANKALMNLGYEALFPDEITNVSPAI 285 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 S D + +FF + Y G + WD Sbjct: 286 LSSLSPDANENHDFFSGSGSSYVIGKTINTEDDDWD 321 >gi|269139684|ref|YP_003296385.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202] gi|267985345|gb|ACY85174.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202] gi|304559553|gb|ADM42217.1| Ribonucleotide reductase of class Ia, beta subunit [Edwardsiella tarda FL6-60] Length = 376 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 71/339 (20%), Positives = 135/339 (39%), Gaps = 24/339 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + +K + + +V + K+ + + W P EV + D ++ Sbjct: 5 IFSQKKNDQLLEPMFFGQPVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ 64 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS Sbjct: 65 ---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSR 121 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182 ++ +II ++ D +F+ I +A Y L + GT + Sbjct: 122 SYTHIIRNIVTDPALVFDDIVSNEEILKRARDISAYYDDLIESTGYYHLLGEGTHQINGK 181 Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 ++ L + E + FY FA + M G A+ + I RDE+L Sbjct: 182 PVSVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEAL 241 Query: 234 HLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL ++N ++ ++P + E + + + +A E +A G +GLN Sbjct: 242 HLTGTQHILNLMRSGQDDPEMAEIAAECEDQCYDLFVQAAQQEKEWAGYLFRDGSMIGLN 301 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F+ NP PW++ + Sbjct: 302 RDILCQYVEYITNIRMQAVGLSLPFETRSNPIPWINAWL 340 >gi|322831489|ref|YP_004211516.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602] gi|321166690|gb|ADW72389.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602] Length = 327 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 62/330 (18%), Positives = 123/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + L+ E+ + R Sbjct: 18 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LSAKEKQLTIRVFTGLTLL 74 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ + + P F EAVH+ ++ I ++L +D E + Sbjct: 75 DTVQNVVGAPTLMKDAVTPHEEAVYSNICFMEAVHARSYSSIFSTLCATVDVDEAYRWSE 134 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E ++ KA L Y D E V V E FY+GF + Sbjct: 135 ENVALQNKAAIILSYY---------------DGEDPLMKKVASVFLESFLFYSGFYLPMY 179 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + ++ ++++ ++ + Sbjct: 180 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKALALESEERQRQIKEQAFDLIQDLYD 239 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327 EI Y E VG + ++++ + AN+ +G E LF + NP + Sbjct: 240 NEIRYTEELYDG--VGWS-EDVKKFLHYNANKALMNLGYEALFPASMADVNPAILSALSP 296 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 297 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 326 >gi|91775577|ref|YP_545333.1| ribonucleotide-diphosphate reductase subunit beta [Methylobacillus flagellatus KT] gi|91709564|gb|ABE49492.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Methylobacillus flagellatus KT] Length = 377 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 74/312 (23%), Positives = 128/312 (41%), Gaps = 25/312 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ GL + E+ + NL + +S+ Sbjct: 33 KYPVFEKLIEKQLSFFWRPEEVDVSQDRIDYQ---GLPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ +I A Sbjct: 90 RSPNVALLPLVSLPELETWVETWAFSETIHSRSYTHIIRNIVSDPALIFDDIVRNENIVA 149 Query: 158 KANWALQYTQTLS------------SPSFTTGTKDADQEFLQDLFVFYV----VFEGMWF 201 +A+ Y L TK + L+ L + + E + F Sbjct: 150 RASDISAYYDDLIHYTMLYSQLGKGDHVINGETKTVNLRELKKLLYLCLMSVNILEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P E Sbjct: 210 YVSFACSFAFAERKVMEGNAKIIRLIARDEALHLTGTQHMLNIMRSGQDDPEFAGIASEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + M A E +A G +GLN QY+++I N R +GL F Sbjct: 270 QDECFEMFKRAAEQEKKWADYLFKDGSMIGLNRDILCQYVEYITNNRMASVGLSAAFPNA 329 Query: 317 E-NPFPWMSEVI 327 + NP PW++ + Sbjct: 330 KNNPIPWINTWL 341 >gi|190896550|gb|ACE96788.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+A + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLAFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|161582009|ref|NP_230900.2| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae O1 biovar El Tor str. N16961] gi|255745652|ref|ZP_05419600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholera CIRS 101] gi|262159072|ref|ZP_06030184.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae INDRE 91/1] gi|262169430|ref|ZP_06037122.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC27] gi|262191406|ref|ZP_06049594.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae CT 5369-93] gi|255736727|gb|EET92124.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholera CIRS 101] gi|262022243|gb|EEY40952.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae RC27] gi|262029257|gb|EEY47909.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae INDRE 91/1] gi|262032695|gb|EEY51245.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio cholerae CT 5369-93] gi|327483944|gb|AEA78351.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Vibrio cholerae LMA3894-4] Length = 377 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWF 201 +A Y L + + G + E + + E + F Sbjct: 150 RAKDIAHYYDDLIELTNDYHRYGEGQHQINGETITVSLKELKKKLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ +E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315 +Q+S + EA E +A G +GLN QY+++I N R +GLEP + Sbjct: 270 KQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPAA 329 Query: 316 TENPFPWMSEVIDLK 330 T NP PW++ + Sbjct: 330 TNNPIPWINAWLSSD 344 >gi|261211025|ref|ZP_05925315.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. RC341] gi|260840000|gb|EEX66600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. RC341] Length = 360 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 16 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 72 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 73 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 132 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDADQEFL-----------QDLFVFYVVFEGMWF 201 +A Y L + + G + E + + E + F Sbjct: 133 RAKDIAHYYDDLIQLTNDYHRYGEGQHQINGETINVSLKNLKKKLYLCLMSVNALEAIRF 192 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ +E Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEEC 252 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315 +Q+S + EA E +A G +GLN QY+++I N R +GLEP + Sbjct: 253 KQESFDLFKEAAEQEKEWAAYLFKDGSMIGLNRDILCQYVEYITNIRMQAVGLEPAYPTA 312 Query: 316 TENPFPWMSEVIDLK 330 T NP PW++ + Sbjct: 313 TTNPIPWINAWLSSD 327 >gi|163803511|ref|ZP_02197381.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4] gi|159172687|gb|EDP57538.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4] Length = 377 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 74/314 (23%), Positives = 124/314 (39%), Gaps = 28/314 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L D E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I +A Sbjct: 92 PNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRA 151 Query: 160 NWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 Y L + D ++ L E + FY Sbjct: 152 KDIAHYYDDLIQATNDYHRYGEGEHLLNGETVKVSLYDLKKKLYICLMSVNA-LEAIRFY 210 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQ 258 FA + M G A+ + I RDESLHLN +IN ++ +E + Sbjct: 211 VSFACSFAFAERELMEGNAKIIKLIARDESLHLNGTQHMINLLRNGQDDFIFMQIAEEVK 270 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316 Q+ + EA E +A G +GLN QY+++I N R +GL + T Sbjct: 271 QECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPKAYPEAT 330 Query: 317 ENPFPWMSEVIDLK 330 NP PW++ + Sbjct: 331 TNPIPWINAWLSSD 344 >gi|319638203|ref|ZP_07992966.1| ribonucleoside diphosphate reductase subunit I beta [Neisseria mucosa C102] gi|317400476|gb|EFV81134.1| ribonucleoside diphosphate reductase subunit I beta [Neisseria mucosa C102] Length = 384 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 97 RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIA 156 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201 +A Y L + GT + ++ L + V E + F Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 216 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIANEL 276 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY- 315 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 277 QDECFNLFKKAAEQEKEWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGA 336 Query: 316 TENPFPWMSEVIDLK 330 T+NP PW++ + Sbjct: 337 TQNPIPWINAWLSSD 351 >gi|323495950|ref|ZP_08101016.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] gi|323318985|gb|EGA71930.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio sinaloensis DSM 21326] Length = 323 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 120/333 (36%), Gaps = 33/333 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ WK LT++E+ + R Sbjct: 13 NWNRMQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGL 66 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A+ P L AF EAVH+ ++ + +++ E F Sbjct: 67 TLLDTIQNTVGAPALMADARTPHEEAVLTNIAFMEAVHARSYSSVFSTMCTTPQIDEAFR 126 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P + KA L+ P V V E FY+GF Sbjct: 127 WADENPLLQKKAQLVLEDYLAQGDP--------------LKKKVASVFLESFLFYSGFYL 172 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + E + + ++ +++ Sbjct: 173 PMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAFNELSEQEQAKVKDEAYSLMFS 232 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 +E Y + + + ++ + AN+ +G EPLF NP + Sbjct: 233 LYEIESQYTESLYDQVGL---TEDVKHFLHYNANKALMNLGFEPLFPDELCQVNPAIMAA 289 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 322 >gi|289178104|gb|ADC85350.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium animalis subsp. lactis BB-12] Length = 326 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 61/328 (18%), Positives = 121/328 (36%), Gaps = 29/328 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W+ ++D E + R Sbjct: 17 NWNRLDDEKDLEVWD---RLTGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGL 70 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P AF E+VH+ ++ I ++L E F+ Sbjct: 71 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEAFD 130 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + P + KA L Y + D + + + E FY+GF Sbjct: 131 WSEKNPHLQRKAQIVLDYY-------------EGDDPLKRKV--ASTLLESFLFYSGFYL 175 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E + + +L+E Sbjct: 176 PMYFSSHAKLTNTADVIRLIIRDEAVHGYYIGYKYQKGLEMASDAKRAEMETYTYDLLNE 235 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324 E+ Y H + + E+++ + AN+ +G LF NP + Sbjct: 236 LYENEVEYTHSLYDEVGLS---DDVEKFLHYNANKALMNLGYPALFPSEICDVNPAILAA 292 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352 + + +FF + Y G + D Sbjct: 293 LSPNADENHDFFSGSGSSYVMGRAEETD 320 >gi|227358546|ref|ZP_03842871.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis ATCC 29906] gi|227161257|gb|EEI46331.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis ATCC 29906] Length = 337 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 64/336 (19%), Positives = 126/336 (37%), Gaps = 31/336 (9%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 +R + ++ E + N W+P ++P+ +D+ W + LT E+ + R Sbjct: 22 SRVNAINWNRIEDEKDLEVWNRLTMNFWLPEKIPLSNDIPSWNT---LTQAEKQLTIRVF 78 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGE 144 +++ + P L F EAVH+ ++ I ++L L D + Sbjct: 79 TGLTLLDTIQNTVGAPTLMPDAQTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDD 138 Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 + E + K++ L+Y Q D + L+ V E FY+G Sbjct: 139 AYRWSEENTYLQKKSDIILRYYQ--------------DSDPLKKKI-ASVFLESFLFYSG 183 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 F + K+ A+ + I+RDE++H + + L ++ + + ++ Sbjct: 184 FYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQNQLLNKSSLEKQDIKDFAFSL 243 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321 L + E+ Y + VG ++++ + AN+ +G E LF +P Sbjct: 244 LLDLYDNEVKYTEDLY--DSVGWT-EDVKKFLHYNANKALMNLGYEALFPDEITNVSPAI 300 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 S D + +FF + Y G + WD Sbjct: 301 LSSLSPDANENHDFFSGSGSSYVIGKTINTEDDDWD 336 >gi|203454817|ref|YP_002225133.1| gp256 [Mycobacterium phage Myrna] gi|197311865|gb|ACH62223.1| gp256 [Mycobacterium phage Myrna] Length = 322 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 61/338 (18%), Positives = 125/338 (36%), Gaps = 31/338 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + L + N+++ K W NN W+P ++P+ +D+ W LT++ERL+ Sbjct: 5 EHTLTRAINWNRVIDEKDAEVWN---RLTNNFWLPEKIPVSNDVQSWHQ---LTEEERLI 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG-- 139 R +++ +++ P AF E+VH+ ++ I ++L Sbjct: 59 TMRVFTGLTMLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHARSYSNIFSTLCST 118 Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 + F E ++ KA L Y + V + EG Sbjct: 119 KEIDAAFRWSEENANLQKKAEIVLSYYN---------------GDDPLKRKVASTLLEGF 163 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 FY+GF + K+ A+ + I+RDE++H + + + +E + Sbjct: 164 LFYSGFYLPMFWSSRGKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLEKETKARQQELKD 223 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-- 317 + +L E E Y + ++++++ N+ +G + LF ++ Sbjct: 224 YTYELLFELFDNEQEYTQDLYDA---TGQTEDVKKFLRYNGNKALQNLGYDALFSRSDCD 280 Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEY--QQGAELKWD 352 NP + + +FF + Y +G + D Sbjct: 281 VNPAILSALSPGGDENHDFFSGSGSTYVMAKGVVTEDD 318 >gi|225023977|ref|ZP_03713169.1| hypothetical protein EIKCOROL_00844 [Eikenella corrodens ATCC 23834] gi|224943002|gb|EEG24211.1| hypothetical protein EIKCOROL_00844 [Eikenella corrodens ATCC 23834] Length = 384 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 138/341 (40%), Gaps = 28/341 (8%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +++ +V + M + +V + KY + + W P E+ + D + + Sbjct: 15 KEKNDVLKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN-- 72 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ Sbjct: 73 -LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 131 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-----------------SPSFT 175 +II ++ D +F+ + I A+A Y L + Sbjct: 132 HIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYYNLLGEGEHRVNGKTIV 191 Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 +D ++ L V E + FY FA + M G A+ + I RDE+LHL Sbjct: 192 VSLRDLKKKLYLCLMCVNV-LEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 250 Query: 236 NFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290 ++N ++ ++P + E + + +A E +A G +GLN Sbjct: 251 TSTQHMLNLMRSGTDDPEMAEIAAELENDCFELFKKAAEQEKEWAEYLFKDGSMIGLNKD 310 Query: 291 SCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330 QY+++I N R +GL F T+NP PW++ + Sbjct: 311 ILCQYVEYITNHRMMAVGLNAAFPAATQNPIPWINAWLSSD 351 >gi|113970253|ref|YP_734046.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. MR-4] gi|114047558|ref|YP_738108.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. MR-7] gi|113884937|gb|ABI38989.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. MR-4] gi|113889000|gb|ABI43051.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. MR-7] Length = 376 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 136/340 (40%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQEILR 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A +Y L + GT D ++ L + E + F Sbjct: 150 RATDIAEYYDHLIKLTQVYHLLGEGTHVIDGEPIEVNTRTLKKALYLCMMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHLN ++ ++ ++P + E Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILTIMQAGKDDPEMGEIAAEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ++ + +A E +A G +GLN QY+++I N+R + L + Sbjct: 270 QQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPQPYAEQ 329 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PWM ++ + E V+ Y Q + + D Sbjct: 330 SNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDSD 369 >gi|291239432|ref|XP_002739627.1| PREDICTED: hCG23833-like [Saccoglossus kowalevskii] Length = 309 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 84/321 (26%), Positives = 142/321 (44%), Gaps = 30/321 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM-QDDLALWKSKNGLTDDERLMIKRNLGF 88 + P+K ++ + W E+ + DL W N LT DER K LGF Sbjct: 2 ERYVTPPIKNLDLYDMWKKHVRCFWTKDEINITSSDLREW---NDLTPDERQFFKCILGF 58 Query: 89 FASSESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 FAS+ +V++N+ L + E R + Q E +HS T+ ++T+ +E E Sbjct: 59 FASTNIIVSDNLALRFLADPNISREARCFYSFQIAMENIHSETYIELLTAYVPEEKERNE 118 Query: 148 M---YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 + P + K+ WA+++ + + V + V EG+ F + Sbjct: 119 LLYSIISWPCLNVKSRWAVKWMND-------------EFATYAERLVAFAVVEGIMFSSS 165 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 FA I + ++ + G+ + ++I RDE LH F + +IK P K R + Sbjct: 166 FAGIYWIKQSGLLAGLTQANEFISRDEGLHCTFACTMYGKIKPRLPDT-------KVRKI 218 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 + E +E + + K +G+N+ E Y+ F+ + +G E F NPFP+M Sbjct: 219 VLEGCEVEKLFVKHALRKPLLGMNSHLMETYVNFVTDNLLTDLGYEKEFGVN-NPFPFMD 277 Query: 325 EVIDLKKEKNFFETRVTEYQQ 345 I ++ + NFFE RVTEY + Sbjct: 278 N-ISMQGKTNFFERRVTEYTR 297 >gi|51595597|ref|YP_069788.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108806924|ref|YP_650840.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Antiqua] gi|108812924|ref|YP_648691.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Nepal516] gi|145599749|ref|YP_001163825.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Pestoides F] gi|149366796|ref|ZP_01888830.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis CA88-4125] gi|153950490|ref|YP_001401734.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis IP 31758] gi|161484771|ref|NP_670275.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] gi|161511422|ref|NP_992302.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|162418296|ref|YP_001605847.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Angola] gi|165924721|ref|ZP_02220553.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938305|ref|ZP_02226863.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009974|ref|ZP_02230872.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211802|ref|ZP_02237837.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167400353|ref|ZP_02305866.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419574|ref|ZP_02311327.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424117|ref|ZP_02315870.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470792|ref|ZP_02335496.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis FV-1] gi|170025073|ref|YP_001721578.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis YPIII] gi|186894660|ref|YP_001871772.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218928372|ref|YP_002346247.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis CO92] gi|229841157|ref|ZP_04461316.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843262|ref|ZP_04463408.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. India 195] gi|229894122|ref|ZP_04509308.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Pestoides A] gi|229903354|ref|ZP_04518467.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Nepal516] gi|270487164|ref|ZP_06204238.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis KIM D27] gi|294503227|ref|YP_003567289.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis Z176003] gi|51588879|emb|CAH20493.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pseudotuberculosis IP 32953] gi|108776572|gb|ABG19091.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Nepal516] gi|108778837|gb|ABG12895.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Antiqua] gi|115346983|emb|CAL19874.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis CO92] gi|145211445|gb|ABP40852.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Pestoides F] gi|149291170|gb|EDM41245.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis CA88-4125] gi|152961985|gb|ABS49446.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pseudotuberculosis IP 31758] gi|162351111|gb|ABX85059.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis Angola] gi|165913683|gb|EDR32302.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923781|gb|EDR40913.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991370|gb|EDR43671.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207573|gb|EDR52053.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962315|gb|EDR58336.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050302|gb|EDR61710.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056966|gb|EDR66729.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751607|gb|ACA69125.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis YPIII] gi|186697686|gb|ACC88315.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+] gi|229679124|gb|EEO75227.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Nepal516] gi|229689609|gb|EEO81670.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. India 195] gi|229697523|gb|EEO87570.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704007|gb|EEO91020.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis Pestoides A] gi|262361266|gb|ACY57987.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis D106004] gi|262365197|gb|ACY61754.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis D182038] gi|270335668|gb|EFA46445.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis KIM D27] gi|294353686|gb|ADE64027.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis Z176003] gi|320015945|gb|ADV99516.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 376 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 137/347 (39%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ +V + K+ + + W P E+ + Sbjct: 10 KNNQLLEPMFFGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + N L D E+ + NL + +S+ + +A+ +S PE ++ + Sbjct: 57 SRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 174 GTHQVNGKTVVVKLRDLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233 Query: 226 YIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N +++ ++P + +E QQ+ + A E +A Sbjct: 234 MIARDEALHLTGTQHILNLMRLGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFR 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R +GL F NP PW++ + Sbjct: 294 DGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFSTRTNPIPWINSWL 340 >gi|239993885|ref|ZP_04714409.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas macleodii ATCC 27126] Length = 376 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 131/314 (41%), Gaps = 24/314 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ LTD E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQISFFWRPEEVDVSRDRVDFQ---KLTDPEKHIFISNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +I+ +L D E+F I Sbjct: 90 RSPNIAFLPIISLPELETWVETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVVNDEIKR 149 Query: 158 KANWALQYTQTLS----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 +A +Y L + T ++ L E + F Sbjct: 150 RAADISKYYDDLIFATQLWQTQGEGVHTVNGVAHTINMYELKKKLYLCMNSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEF 257 Y FA + M G ++ + I RDE+LHL+ ++N ++P + +E Sbjct: 210 YVSFACTFAFAERKLMEGNSKIIRLIARDENLHLSSTQHILNLWAKGKDDPEMAQIAEEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++++R + A E +A G +GLN QY+++IAN+R IGL+ F+ + Sbjct: 270 KEEARAIFMNAVEQEKQWADYLFQNGSMIGLNKEILCQYVEYIANQRMSAIGLDTPFEIS 329 Query: 317 ENPFPWMSEVIDLK 330 NP PWM+ ++ Sbjct: 330 SNPLPWMNNYLNSD 343 >gi|317492553|ref|ZP_07950980.1| ribonucleotide reductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919303|gb|EFV40635.1| ribonucleotide reductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 376 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 125/310 (40%), Gaps = 25/310 (8%) Query: 40 GWAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 +EK + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 34 HEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGR 90 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I + Sbjct: 91 SPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPATVFDDIVTNEEILKR 150 Query: 159 ANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFY 202 A Y L S GT + + ++ L + E + FY Sbjct: 151 AKDISGYYDDLIEMSSYWHLLGEGTHNVNGKTVTVNLRALKKQLYLCLMSVNALEAIRFY 210 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQ 258 FA + M G A+ + I RDE+LHL ++N ++ E + Sbjct: 211 VSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHILNLMRSGQDDPEMAEVAVECE 270 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 Q+ + A E +A G +GLN QY+++I N R +GL+ F+ Sbjct: 271 QQCYDLFVLAAEQEKEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLKLPFQTRS 330 Query: 318 NPFPWMSEVI 327 NP PW++ + Sbjct: 331 NPIPWINAWL 340 >gi|148978906|ref|ZP_01815226.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales bacterium SWAT-3] gi|145962104|gb|EDK27390.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales bacterium SWAT-3] Length = 377 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 72/313 (23%), Positives = 128/313 (40%), Gaps = 26/313 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L + E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ D G +F+ E I +A Sbjct: 92 PNVALLPLVSLPEVETWIETWSFSETIHSRSYTHIIRNIVNDPGLVFDDIVENEEILKRA 151 Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203 Y L + + G + + ++ L + E + FY Sbjct: 152 KDIAFYYDDLIKLTADYHRYGEGNHNINGEDVKISLHDLKKKLYLCLMSVNALEAIRFYV 211 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQ 259 FA + M G A+ + I RDE+LHL +IN ++ +E +Q Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFAFMQIAEECKQ 271 Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317 + + EA E +A G +GLN QY+++I N R +GL + T Sbjct: 272 ECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLGTAYPEATS 331 Query: 318 NPFPWMSEVIDLK 330 NP PW++ + Sbjct: 332 NPIPWINAWLSSD 344 >gi|298368555|ref|ZP_06979873.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282558|gb|EFI24045.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 384 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 127/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 156 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201 +A Y L + GT + ++ L + V E + F Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 216 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EF 257 Y FA + M G A+ + I RDE+LHL ++N ++ E Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIAVEL 276 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY- 315 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 277 QDECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGA 336 Query: 316 TENPFPWMSEVIDLK 330 T+NP PW++ + Sbjct: 337 TQNPIPWINAWLSSD 351 >gi|239502693|ref|ZP_04662003.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii AB900] Length = 309 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 94/321 (29%), Positives = 158/321 (49%), Gaps = 17/321 (5%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 + P+K+ WA NN W P V M DD+A + N L +R M + L F ++ + Sbjct: 3 ISPMKHTWAKGILDRMENNTWFPHVVNMADDVASY---NRLNAADRFMFDKALAFLSNLD 59 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 + NNI I +H+++PE L RQA+EEA+H ++ II ++ LD ++ + Sbjct: 60 GIQFNNINQNIAKHVTSPEVSMCLSRQAWEEALHVKSYATIIETVSLDPMSVYMTFERDG 119 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 + K + L+ ++ L E V V+ EG++F++GF L Sbjct: 120 LLAQKNQFILKQSRLLGEKF--------SAEGFALSCVSNVLLEGVYFFSGFLSFYLLAD 171 Query: 214 ANKMVGIAEQYQYIMRD-ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 +M+G A+ +YI RD E HL+ +++ ++ EN ++T+ F K+ + ++ +E Sbjct: 172 KGEMLGSADMIRYIQRDEEGTHLDLFAHMLDTLRHENKDVFTQSFWNKALEVFLTSSEME 231 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDLK- 330 I++ N + E Y++ +AN R QI + +NPFPW+ + Sbjct: 232 ISWGKYITKG---VTNPKAIEDYIKHLANLRAEQIQAPFVPYPGVKNPFPWVEQFSKPNT 288 Query: 331 KEKNFFETRVTEYQQGAELKW 351 EKNFFETRVT+Y+ G L W Sbjct: 289 SEKNFFETRVTDYKVGGALVW 309 >gi|238920521|ref|YP_002934036.1| ribonucleotide-diphosphate reductase subunit beta [Edwardsiella ictaluri 93-146] gi|238870090|gb|ACR69801.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Edwardsiella ictaluri 93-146] Length = 376 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 130/339 (38%), Gaps = 24/339 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + +K + + +V + K+ + + W P EV + D ++ Sbjct: 5 IFSQKKNDQLLEPMFFGQPVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ 64 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS Sbjct: 65 ---ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSR 121 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182 ++ +II ++ D +F+ I +A Y L + GT + Sbjct: 122 SYTHIIRNIVTDPSLVFDDIVSNEEILKRARDISAYYDDLIETTGYYHLLGEGTHQINGK 181 Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 ++ L + E + FY FA + M G A+ + I RDE+L Sbjct: 182 PVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEAL 241 Query: 234 HLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL ++N ++ E + + +A E +A G +GLN Sbjct: 242 HLTGTQHILNLMRAGQDDPEMAEIATECASQCYDLFVQAAQQEKEWAGYLFRDGSMIGLN 301 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL F+ NP PW++ + Sbjct: 302 RDILCQYVEYITNIRMQAVGLPLPFETRSNPIPWINAWL 340 >gi|255065945|ref|ZP_05317800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sicca ATCC 29256] gi|255049856|gb|EET45320.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sicca ATCC 29256] Length = 377 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 128/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201 +A Y L + GT + ++ L + V E + F Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EF 257 Y FA + M G A+ + I RDE+LHL ++N ++ + E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGSDDPEMAEIAVEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY- 315 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QDECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGA 329 Query: 316 TENPFPWMSEVIDLK 330 T+NP PW++ + Sbjct: 330 TQNPIPWINAWLSSD 344 >gi|294625675|ref|ZP_06704297.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294664800|ref|ZP_06730124.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600044|gb|EFF44159.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605431|gb|EFF48758.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 347 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 3 ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + N L+ E+ +G A+ +S I + ++++P Sbjct: 63 GDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ D+ +F + R P+I + + + ++ Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYED--------FMRE 170 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA +L R N+M G + +I RDE H F + Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I EN L + A LE + E + G G++ +Y+++ A Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289 Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 N+ +G+E L++ +N PW+ D + + +FFE R Y++ Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKK 337 >gi|190896536|gb|ACE96781.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896560|gb|ACE96793.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896566|gb|ACE96796.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|238797463|ref|ZP_04640962.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia mollaretii ATCC 43969] gi|238718734|gb|EEQ10551.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia mollaretii ATCC 43969] Length = 376 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 126/311 (40%), Gaps = 24/311 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + N L D E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + G+ + ++ L + E + F Sbjct: 150 RAKDISAYYDDLIEMTSYYHLLGEGSHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL +IN ++ ++P + +E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHIINLMRSGEDDPEMAEIAEEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ+ + A E +A G +GLN QY+++I N R +GL F Sbjct: 270 QQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTR 329 Query: 317 ENPFPWMSEVI 327 NP PW++ + Sbjct: 330 TNPIPWINSWL 340 >gi|332974193|gb|EGK11127.1| ribonucleotide-diphosphate reductase beta subunit [Psychrobacter sp. 1501(2011)] Length = 377 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 132/315 (41%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D + L+ E+ + NL + +S+ Sbjct: 33 KHPIFEQLIEKQLSFFWRPEEVDVSKDRIDY---GNLSTHEQHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + + +S PE ++ +F E +HS ++ +II ++ D +F+ + I Sbjct: 90 RSPNVVLLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIMDNEHILQ 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A+ Y L S F GT + ++ L V V E + F Sbjct: 150 RASDIAHYYDELYQNSQLYSLFGPGTHMVNGEQKHVDLRKLKKQLYLCLVAVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL +IN + ++P + ++ Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIKLIARDEALHLTSTQHMINILASGKDDPEMAEIAEDC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +++S + +A E +A G +GLN QY+++I N R +GL +F + Sbjct: 270 REESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDILCQYVEYITNLRMEAVGLPSIFPDS 329 Query: 317 E-NPFPWMSEVIDLK 330 + NP PW++ + Sbjct: 330 KSNPIPWINTWLSSD 344 >gi|332974578|gb|EGK11498.1| ribonucleotide-diphosphate reductase beta subunit [Kingella kingae ATCC 23330] Length = 384 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 83/352 (23%), Positives = 137/352 (38%), Gaps = 40/352 (11%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 ANN P+ G+ VNV AR D KY + + W P EV + Sbjct: 17 ANNPLTEPMFFGQP-VNV-------ARYDQQ-----KYEVFEKLIEKQISFFWRPEEVDL 63 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + + L D E+ + NL + +S+ + + +S PE ++ A Sbjct: 64 SRDRIDYAN---LPDHEKHIFISNLKYQTLLDSIQGRSPNVGFLPLVSIPELETWIETWA 120 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------- 170 F E +HS ++ +II ++ D +F+ + I A+A Y L Sbjct: 121 FFETIHSRSYTHIIRNIVNDPSVVFDDIVQNDYIIARAEDIACYYDDLIEYTQYFNLLGE 180 Query: 171 ------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 T ++ ++ L V E + FY FA + M G A+ Sbjct: 181 GKHTVNGKEITISLRELKKKLYLCLMCVNV-LEAIRFYVSFACSFAFAERELMEGNAKII 239 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE+LHL ++N ++ L E Q + + +A E +A Sbjct: 240 KLIARDEALHLTSTQHMLNLMRSGVDDLDMAEIAAELQDECFELFKKAAEQEKEWAAYLF 299 Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330 G +GLN QY+++I N R +GL+ F T+NP PW++ + Sbjct: 300 KDGSMIGLNKDILCQYVEYITNHRMLAVGLQAAFPQATQNPIPWINAWLSSD 351 >gi|190896538|gb|ACE96782.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896548|gb|ACE96787.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896558|gb|ACE96792.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|61806369|ref|YP_214728.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4] gi|61563913|gb|AAX46968.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4] Length = 387 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 82/362 (22%), Positives = 139/362 (38%), Gaps = 27/362 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + E+ V + KY + W P EV +Q D ++ Sbjct: 14 VFNTEEVDTKKQPMFFGKPLGVQRYDSYKYPVFDKLTQQQLGYFWRPEEVSLQKDRGDYQ 73 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 LT +++ + NL + +S+ +A + S PE + F E +HS Sbjct: 74 Q---LTPEQKHIFTSNLKYQIMLDSVQGRAPGMAFAPYCSLPELEGCINVWQFMEMIHSR 130 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------------- 175 ++ YII ++ D E+F+ + +I +A + + + Sbjct: 131 SYTYIIKNVYSDPSEVFDTIIKDTNILQRAESVTKSYDDFVNDAHEYDSGNAWKFAREGH 190 Query: 176 ---TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 T + + L + EG+ FY FA + G M G A+ I RDES Sbjct: 191 PAGTLDRRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLISRDES 250 Query: 233 LHLNFGIDVI-NQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL ++ ++P + KE + + M E A+A +G +GLN Sbjct: 251 QHLVITQQILKKWADGDDPEMQEIAKEEKSFVKDMFRNTVNEEKAWADYLFKEGSMIGLN 310 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQ 345 A Y+++IANRR IGL+P++ NP PW ++ K ++N ET + Y Sbjct: 311 ARLLNNYVEWIANRRMKAIGLDPIYDQPLRNNPLPWTEHWLNSKGQQNAPQETEIESYVI 370 Query: 346 GA 347 G Sbjct: 371 GG 372 >gi|115525181|ref|YP_782092.1| ribonucleotide reductase [Rhodopseudomonas palustris BisA53] gi|115519128|gb|ABJ07112.1| ribonucleotide reductase [Rhodopseudomonas palustris BisA53] Length = 223 Score = 227 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 137/189 (72%), Positives = 153/189 (80%) Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 ++TQ L P+F TGT +AD+ FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQ Sbjct: 35 KHTQHLDDPTFVTGTVEADRAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQ 94 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 YQYI+RDES+HLNFGID+INQIKIENP LWT FQ++ R ML EA LE AY +TMP+G Sbjct: 95 YQYILRDESIHLNFGIDIINQIKIENPELWTAGFQEELRGMLREAAELEAAYCRDTMPRG 154 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 F GLNA CEQYM FI NRRC Q+GL P+F ENPFPWMSE +DLKKEKNFFETRV EY Sbjct: 155 FFGLNAALCEQYMHFITNRRCAQLGLAPIFAEVENPFPWMSETMDLKKEKNFFETRVIEY 214 Query: 344 QQGAELKWD 352 Q G L WD Sbjct: 215 QNGGALTWD 223 >gi|296455120|ref|YP_003662264.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. longum JDM301] gi|296184552|gb|ADH01434.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. longum JDM301] Length = 330 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 64/351 (18%), Positives = 131/351 (37%), Gaps = 32/351 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+ Sbjct: 1 MAPISIPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ +T+DE + R +++ +++ P AF E+V Sbjct: 55 SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++ I ++L E F+ + KA L Y + D Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYY-------------EGDNP 158 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + + + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 159 YKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + + Q + +L+E E+ Y + + E+++++ N+ Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDRVGL---TDDVEKFLRYNGNKAL 273 Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +G LF NP S + + +FF + Y G + D Sbjct: 274 MNLGYPALFPAEICDVNPAILASLSPNADENHDFFSGSGSSYVMGKAEETD 324 >gi|284009345|emb|CBA76525.1| ribonucleoside-diphosphate reductase 1, beta subunit [Arsenophonus nasoniae] Length = 378 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 68/338 (20%), Positives = 135/338 (39%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P E+ + D ++ Sbjct: 8 FSQTKNDQLQEPMFFGQPVNVARYDQQKYPIFEQLIEKQLSFFWRPEEIDVSRDRIDYQ- 66 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 67 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRS 124 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ + +F+ I +A Y L + G+ + Sbjct: 125 YTHIIRNIVNEPSIIFDDIVTNNEILKRAKDISAYYDDLIELTSYYHLLGEGSHTINGKS 184 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 185 VIISLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 244 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + KE ++ + +A E +A G +GLN Sbjct: 245 LTGTQHMLNLMRSGQDDPEMAIIAKECEEACYRLFVQAAEQEKEWAEYLFSGGSMIGLNK 304 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 305 DILCQYIEYITNIRMQAVGLKLPFETRSNPIPWINAWL 342 >gi|84386981|ref|ZP_00990005.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio splendidus 12B01] gi|86148466|ref|ZP_01066756.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] gi|218709927|ref|YP_002417548.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio splendidus LGP32] gi|84378271|gb|EAP95130.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio splendidus 12B01] gi|85833763|gb|EAQ51931.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] gi|218322946|emb|CAV19123.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio splendidus LGP32] Length = 377 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 72/313 (23%), Positives = 128/313 (40%), Gaps = 26/313 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L + E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ D G +F+ E I +A Sbjct: 92 PNVALLPLVSLPEVETWIETWSFSETIHSRSYTHIIRNIVNDPGVVFDDIVENEEILKRA 151 Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203 Y L + + G + + ++ L + E + FY Sbjct: 152 KDIAFYYDDLIKLTADYHRYGEGNHNINGEDVKISLHDLKKKLYVCLMSVNALEAIRFYV 211 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQ 259 FA + M G A+ + I RDE+LHL +IN ++ +E +Q Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMINLLRNGQDDFEFMQIAEECKQ 271 Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317 + + EA E +A G +GLN QY+++I N R +GL + T Sbjct: 272 ECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLGTAYPEATS 331 Query: 318 NPFPWMSEVIDLK 330 NP PW++ + Sbjct: 332 NPIPWINAWLSSD 344 >gi|194366071|ref|YP_002028681.1| ribonucleotide-diphosphate reductase subunit beta [Stenotrophomonas maltophilia R551-3] gi|194348875|gb|ACF51998.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia R551-3] Length = 346 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 80/351 (22%), Positives = 147/351 (41%), Gaps = 19/351 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N R+ + + Y + Y N W+P EV M+ Sbjct: 2 ATPLDRIKILEPRHPNRSTGIINGRTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + L E+ +G A+ +S I + ++++P Sbjct: 62 LDARQY---GELNAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ ++ +F + R P+I + + ++ Sbjct: 118 QEVIHNESYSYVLASITDLSNQNRIFEIARTHPTIIKRNAPIMGAYDD--------FMRE 169 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA ++ R N+M G + +I RDE H F + Sbjct: 170 KTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQNRMNGTGKIISFINRDELAHTKFISE 229 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I ENP L T E A LE ++ E + G G++ +Y+++ A Sbjct: 230 LIRAIIGENPELQTNELTAYVHQSFEHAIELETQWSSEVL-DGIDGIDVDEMVRYVKYRA 288 Query: 301 NRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQGAE 348 N+ +G+E L+ T+N PW+ D + + +FFE R Y++ Sbjct: 289 NKMAGMLGIERLYSDTTDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNA 339 >gi|27366311|ref|NP_761839.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio vulnificus CMCP6] gi|37679427|ref|NP_934036.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio vulnificus YJ016] gi|320156821|ref|YP_004189200.1| ribonucleotide reductase of class Ia (aerobic), subunit beta [Vibrio vulnificus MO6-24/O] gi|27362512|gb|AAO11366.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Vibrio vulnificus CMCP6] gi|37198171|dbj|BAC94007.1| ribonucleotide reductase, beta subunit [Vibrio vulnificus YJ016] gi|319932133|gb|ADV86997.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Vibrio vulnificus MO6-24/O] Length = 377 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 74/343 (21%), Positives = 130/343 (37%), Gaps = 27/343 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNQTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-----------------SPS 173 + +II ++ D +F+ E I +A Y L + Sbjct: 123 YTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQLTNDYHRFGEGEHVVNGET 182 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 + ++ L E + FY FA + M G A+ + I RDE+L Sbjct: 183 IKVSLYELKKKLYLCLMSVNA-LEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEAL 241 Query: 234 HLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HLN +IN ++ +E +Q+ + EA E +A G +GLN Sbjct: 242 HLNGTQHMINLLRNGQDDFSFMQIAEEAKQQCFDLFKEAAEQEKEWAEYLFKDGSMIGLN 301 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLK 330 QY+++I N R +GL + T NP PW++ + Sbjct: 302 KDILCQYVEYITNIRMQAVGLPVAYPNATSNPIPWINAWLSSD 344 >gi|293193572|ref|ZP_06609842.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces odontolyticus F0309] gi|292819928|gb|EFF78930.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces odontolyticus F0309] Length = 320 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 122/330 (36%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +DL WK+ LT DE+LM R Sbjct: 11 NWNKIQDDKDLEVWDRLTGNFWLPEKIPLSNDLPSWKT---LTKDEQLMTNRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 ++L +++ P AF E+VH+ ++ I ++L E E F Sbjct: 68 DTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFRWSN 127 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E ++ KA Y D + V + E FY+GF + Sbjct: 128 ENEALQKKAEIVKSYY---------------DGNDPEKRKVASTMLESFLFYSGFYAPMY 172 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + E+ + + + ++L+E Sbjct: 173 WSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVNESSQERQDDLRDYTYSLLYELYE 232 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E Y + + ++++++ AN+ +G E LF NP + Sbjct: 233 NEEQYTEDLYDPLGL---TEDVKKFLRYNANKALMNLGYEALFPADATDVNPAILAALSP 289 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 290 NADENHDFFSGSGSSYVMGEVVDTEDEDWD 319 >gi|238760194|ref|ZP_04621340.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia aldovae ATCC 35236] gi|238701573|gb|EEP94144.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia aldovae ATCC 35236] Length = 376 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 75/347 (21%), Positives = 131/347 (37%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ +V + K+ + + W P E+ + Sbjct: 10 KNNQLLEPMFFGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + N L D E+ + NL + +S+ + +A+ +S PE ++ + Sbjct: 57 SRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 174 GTHQVNGKTVVVNLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ E QQ+ + A E +A Sbjct: 234 MIARDEALHLTGTQHILNLMRAGEDDPEMAEIAIECQQQCYDLFVLAAEQEKEWAEYLFR 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R +GL F NP PW++ + Sbjct: 294 DGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFATRTNPIPWINSWL 340 >gi|190896552|gb|ACE96789.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E +HS + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVHVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|117920413|ref|YP_869605.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp. ANA-3] gi|117612745|gb|ABK48199.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella sp. ANA-3] Length = 391 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 136/340 (40%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 48 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQG 104 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 105 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNQEILR 164 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A +Y L + GT D ++ L + E + F Sbjct: 165 RATDIAEYYDHLIKLTQVYHLLGEGTHVIDGEPIEVNTRTLKKALYLCMMSVNALEAIRF 224 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHLN ++ ++ ++P + E Sbjct: 225 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILTIMQGGKDDPEMAEIAAEC 284 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ++ + +A E +A G +GLN QY+++I N+R + L + Sbjct: 285 QQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPLPYAEL 344 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PWM ++ + E V+ Y Q + + D Sbjct: 345 SNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDSD 384 >gi|213693323|ref|YP_002323909.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524784|gb|ACJ53531.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459505|dbj|BAJ70126.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 330 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 64/351 (18%), Positives = 131/351 (37%), Gaps = 32/351 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+ Sbjct: 1 MAPISIPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ +T+DE + R +++ +++ P AF E+V Sbjct: 55 SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++ I ++L E F+ + KA L Y + D Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYY-------------EGDNP 158 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + + + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 159 YKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + + Q + +L+E E+ Y + + E+++++ N+ Sbjct: 217 GIAQLGDAERLDLQDYTYDLLNELYDNEVEYTQSLYDRVGL---TDDVEKFLRYNGNKAL 273 Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +G LF NP S + + +FF + Y G + D Sbjct: 274 MNLGYPALFPAEICDVNPAILASLSPNADENHDFFSGSGSSYVMGKAEETD 324 >gi|183601891|ref|ZP_02963260.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis HN019] gi|219682805|ref|YP_002469188.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis AD011] gi|241190381|ref|YP_002967775.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195787|ref|YP_002969342.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218776|gb|EDT89418.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis HN019] gi|219620455|gb|ACL28612.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium animalis subsp. lactis AD011] gi|240248773|gb|ACS45713.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250341|gb|ACS47280.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793368|gb|ADG32903.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium animalis subsp. lactis V9] Length = 321 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 61/328 (18%), Positives = 121/328 (36%), Gaps = 29/328 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W+ ++D E + R Sbjct: 12 NWNRLDDEKDLEVWD---RLTGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGL 65 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P AF E+VH+ ++ I ++L E F+ Sbjct: 66 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEAFD 125 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + P + KA L Y + D + + + E FY+GF Sbjct: 126 WSEKNPHLQRKAQIVLDYY-------------EGDDPLKRKV--ASTLLESFLFYSGFYL 170 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E + + +L+E Sbjct: 171 PMYFSSHAKLTNTADVIRLIIRDEAVHGYYIGYKYQKGLEMASDAKRAEMETYTYDLLNE 230 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324 E+ Y H + + E+++ + AN+ +G LF NP + Sbjct: 231 LYENEVEYTHSLYDEVGLS---DDVEKFLHYNANKALMNLGYPALFPSEICDVNPAILAA 287 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352 + + +FF + Y G + D Sbjct: 288 LSPNADENHDFFSGSGSSYVMGRAEETD 315 >gi|23465253|ref|NP_695856.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum NCC2705] gi|23325884|gb|AAN24492.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium longum NCC2705] Length = 330 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 63/351 (17%), Positives = 130/351 (37%), Gaps = 32/351 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+ Sbjct: 1 MAPISIPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ +T+DE + R +++ +++ P AF E+V Sbjct: 55 SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++ I ++L E F+ + KA L Y + D Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYY-------------EGDNP 158 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + + + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 159 YKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + + Q + +L+E E+ Y + E+++++ N+ Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDCVGL---TDDVEKFLRYNGNKAL 273 Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +G LF NP + + + +FF + Y G + D Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324 >gi|326796346|ref|YP_004314166.1| ribonucleoside-diphosphate reductase [Marinomonas mediterranea MMB-1] gi|326547110|gb|ADZ92330.1| Ribonucleoside-diphosphate reductase [Marinomonas mediterranea MMB-1] Length = 377 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 76/339 (22%), Positives = 141/339 (41%), Gaps = 25/339 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 ++ ++ + L +V + K+ + + W P EV + D + Sbjct: 6 FNRKQFDSLKEPMFLGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSSDRKDF-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -LNLAEHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF-------------TTG 177 + +II ++ D +F+ IT +A+ +Y L G Sbjct: 123 YTHIIRNIVNDPTVIFDDIIVNEEITKRADSVSRYYDDLIEKVNLYNTLGLGVHNVPGKG 182 Query: 178 TKDADQEFLQDLFVFYV----VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 D + L+ + V E + FY FA + M G A+ + I RDE+L Sbjct: 183 EVDVSMKALKKALYVTLASVNVLEAIRFYVSFACSFAFAERTLMEGNAKIIKLIARDEAL 242 Query: 234 HLNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL ++N + ++P + +E +Q+ + EA E +A G +GLN Sbjct: 243 HLTGTQHMLNLMTSGKDDPEMAIIAQECRQEITDIFIEAAQQEKEWAKYLFKDGSMIGLN 302 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A QY+++I+N R +GLEP F+ NP PW++ + Sbjct: 303 AEILGQYVEYISNVRMQAVGLEPAFETKSNPIPWINAWL 341 >gi|42543287|pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH Ferrous Ions At Neutral Ph gi|42543288|pdb|1PJ0|B Chain B, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH Ferrous Ions At Neutral Ph gi|42543289|pdb|1PJ1|A Chain A, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS Ions At Ph 5 gi|42543290|pdb|1PJ1|B Chain B, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS Ions At Ph 5 Length = 375 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 78/367 (21%), Positives = 145/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + + P EV + D ++ Sbjct: 5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFFRPEEVDVSRDRIDYQ- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + ES+ + +A+ +S PE ++ AF E +HS + Sbjct: 64 --ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 122 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 241 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F NP PW++ + + E V+ Y Q Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361 Query: 346 GAELKWD 352 +E+ D Sbjct: 362 DSEVDTD 368 >gi|332993182|gb|AEF03237.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas sp. SN2] Length = 376 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 70/314 (22%), Positives = 131/314 (41%), Gaps = 24/314 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ LTD E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQISFFWRPEEVDVSRDRVDFQ---KLTDPEKHIFISNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +I+ +L D E+F I Sbjct: 90 RSPNIAFLPIISLPELETWVETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVVNDEIKR 149 Query: 158 KANWALQYTQTLSSPSFTTGTK----------------DADQEFLQDLFVFYVVFEGMWF 201 +A +Y L + T+ ++ L E + F Sbjct: 150 RAADISKYYDDLIFATQLWQTQGEGVHTVDGVPHTINMYELKKKLFLCMNSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G ++ + I RDE+LHL+ ++N ++P + ++ Sbjct: 210 YVSFACTFAFAERKLMEGNSKIIRLIARDENLHLSSTQHILNLWARSKDDPEMAQIAQDC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++++R + A E +A G +GLN Y+++IAN+R IGL+ F+ + Sbjct: 270 KEEARAIFMNAVEQEKEWADYLFKTGSMIGLNKEILCSYVEYIANQRMTAIGLDAPFEIS 329 Query: 317 ENPFPWMSEVIDLK 330 NP PWM+ ++ Sbjct: 330 SNPLPWMNNYLNSD 343 >gi|239622882|ref|ZP_04665913.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133660|ref|YP_004000999.1| nrdf [Bifidobacterium longum subsp. longum BBMN68] gi|317482331|ref|ZP_07941351.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA] gi|322690138|ref|YP_004209872.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum subsp. infantis 157F] gi|239514879|gb|EEQ54746.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517762|emb|CBK71378.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bifidobacterium longum subsp. longum F8] gi|311772922|gb|ADQ02410.1| NrdF [Bifidobacterium longum subsp. longum BBMN68] gi|316916211|gb|EFV37613.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA] gi|320461474|dbj|BAJ72094.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium longum subsp. infantis 157F] Length = 330 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 63/351 (17%), Positives = 131/351 (37%), Gaps = 32/351 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+ Sbjct: 1 MAPISIPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ +T+DE + R +++ +++ P AF E+V Sbjct: 55 SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++ I ++L E F+ + KA L Y + D Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYY-------------EGDNP 158 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + + + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 159 YKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + + Q + +L+E E+ Y + + E+++++ N+ Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDRVGL---TDDVEKFLRYNGNKAL 273 Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +G LF NP + + + +FF + Y G + D Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324 >gi|322832009|ref|YP_004212036.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602] gi|321167210|gb|ADW72909.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602] Length = 376 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 130/338 (38%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + K+ + + W P E+ + D ++ Sbjct: 6 FSQNKNDQLLEPMFFGQSVNVARFDQQKHEIFEKLIEKQLSFFWRPEEIDVSRDRIDFQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y TL + GT + Sbjct: 123 YTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISGYYDTLIEMTSYYHLLGEGTHQVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VVVNLRELKKKLYICLMSVNALEAVRFYVSFACSFAFAERELMEGNAKIIKMIARDEALH 242 Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L +N ++ E QQ+ + A E +A G +GLN Sbjct: 243 LTGTQHALNLLRSGQDDPEMAEIALECQQECHDLFVLAAQQEKDWAEYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ FK NP PW++ + Sbjct: 303 DILCQYVEYITNIRMQAVGLDAPFKTRSNPIPWINAWL 340 >gi|71065825|ref|YP_264552.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter arcticus 273-4] gi|71038810|gb|AAZ19118.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Psychrobacter arcticus 273-4] Length = 377 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D + L+ E+ + NL + +S+ Sbjct: 33 KHPIFEQLIEKQLSFFWRPEEVDVSRDRMDY---GNLSSHEQHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + + +S PE ++ F E +HS ++ +II ++ D +F+ + I Sbjct: 90 RSPNVVLLPLVSIPELETWIETWTFSETIHSRSYTHIIRNIINDPAIVFDDIMQNEHILG 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A +Y L S + GT + ++ L + V E + F Sbjct: 150 RAADIAKYYDDLYYSSSLYNLYGAGTHTINGKQITVDLKSLKKQLYLCLMAVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLWT--KEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + KE Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIKLIARDEALHLTGTQHILNLMRIGRDDPEMVDIAKEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++S + +A E +A G +GLN QY+++I N R +GL F + Sbjct: 270 YEESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDILCQYIEYITNLRMEAVGLPVAFPKS 329 Query: 317 E-NPFPWMSEVIDLK 330 + NP PW++ + Sbjct: 330 KSNPIPWINTWLSSD 344 >gi|326381484|ref|ZP_08203178.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL B-59395] gi|326199731|gb|EGD56911.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL B-59395] Length = 333 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 122/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +D+ W + LTD E+ + R Sbjct: 24 NWNRVQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTDYEKTLTMRVFTGL 77 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + E F Sbjct: 78 TLLDTIQGTVGAISLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFR 137 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA + Y + + V + E FY+GF Sbjct: 138 WSEENEYLQRKAQIVMDYYR---------------GDDPLKRKVASTLLESFLFYSGFYL 182 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 183 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLEVQTPERRQELKDYTFELLFE 242 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + ++++++ AN+ +G E +F E NP + Sbjct: 243 LYDNETDYTEALYDEVGLS---EDVKKFLRYNANKALMNLGYEAMFPKDETDVNPAILSA 299 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 300 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 332 >gi|255327220|ref|ZP_05368295.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia mucilaginosa ATCC 25296] gi|255295838|gb|EET75180.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia mucilaginosa ATCC 25296] Length = 325 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 66/333 (19%), Positives = 129/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +D+ WK+ LT++E+ + R Sbjct: 16 NWNRIEDEKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVFTGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ AF E+VH+ ++ I ++L + E F Sbjct: 70 TLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFR 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L Y + V + E FY+GF Sbjct: 130 WAAENEHLQKKAKIVLSYY---------------TGDDPLKKKVASTLLESFLFYSGFYL 174 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + E ++ + +L+E Sbjct: 175 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKESAERQAELKEYTFNLLYE 234 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEV 326 E+AY H VG + ++++ + AN+ +G EP+F T N P + Sbjct: 235 LYENEVAYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEPMFPATVTNVSPAILSA 291 Query: 327 I--DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + + +FF + Y G + WD Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324 >gi|238794433|ref|ZP_04638043.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia intermedia ATCC 29909] gi|238726228|gb|EEQ17772.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia intermedia ATCC 29909] Length = 330 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 128/330 (38%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ + + N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 21 NWNKIEDDKDLDVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 77 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D + + Sbjct: 78 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 137 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + KA+ LQ+ + + L+ V E FY+GF + Sbjct: 138 ENGPLQKKADIILQHYH--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 182 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + Q + + +E + + +L + Sbjct: 183 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQQGLEKVDNARRQEIKNFAFDLLQDLYD 242 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E+ Y + K VG ++++ + AN+ +G E LF ++ +P + Sbjct: 243 NEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 299 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 300 NADENHDFFSGSGSSYVIGKAINTEDEDWD 329 >gi|224283650|ref|ZP_03646972.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium bifidum NCIMB 41171] gi|310288088|ref|YP_003939347.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium bifidum S17] gi|313140805|ref|ZP_07802998.1| ribonucleoside-diphosphate reductase subunit beta [Bifidobacterium bifidum NCIMB 41171] gi|309252025|gb|ADO53773.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium bifidum S17] gi|313133315|gb|EFR50932.1| ribonucleoside-diphosphate reductase subunit beta [Bifidobacterium bifidum NCIMB 41171] Length = 330 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 61/351 (17%), Positives = 130/351 (37%), Gaps = 32/351 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+ Sbjct: 1 MAPISVPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ ++DDE + +++ +++ P AF E+V Sbjct: 55 SWQ---KMSDDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++ I ++L + F+ + KA L Y + D Sbjct: 112 HAKSYSSIFSTLCSTKEIDAAFDWSERNEFLQKKAEIVLDYY-------------EGDSP 158 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 159 LKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQR 216 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 +E ++ + +L+E E+ Y + + E+++++ N+ Sbjct: 217 GLERVSDAKREEMREYTYNLLNELYDNEVEYTESLYERVGL---TDDVEKFLRYNGNKAL 273 Query: 305 HQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +G LF NP + + + +FF + Y G + D Sbjct: 274 MNLGYPALFPAEACDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324 >gi|260768282|ref|ZP_05877216.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio furnissii CIP 102972] gi|260616312|gb|EEX41497.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio furnissii CIP 102972] gi|315179989|gb|ADT86903.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio furnissii NCTC 11218] Length = 377 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 74/340 (21%), Positives = 136/340 (40%), Gaps = 26/340 (7%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +K+ N + M + +V + KY + + W P EV + D + Sbjct: 8 QKKNNQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDYA--- 64 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ Sbjct: 65 KLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRSYT 124 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDADQEFL- 186 +II ++ D +F+ E I +A + L + F GT + + E + Sbjct: 125 HIIRNIVNDPAIVFDDIVENEHIIKRAKDIAHFYDDLIQMTNDYHRFGEGTHELNGETVH 184 Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236 + E + FY FA + M G A+ + I RDE+LHL Sbjct: 185 VSLKGLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244 Query: 237 FGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291 +IN ++ +E +Q+ + +A E +A G +GLN Sbjct: 245 GTQHMINLLRNGMDDFEFLQIAEECKQECFDLFKQAAEQEKEWAEYLFKDGSMIGLNKDI 304 Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330 QY+++I N R +GL+ + T NP PW++ + Sbjct: 305 LCQYVEYITNIRMQAVGLDAAYPSATTNPIPWINAWLSSD 344 >gi|172058301|ref|YP_001814761.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium sibiricum 255-15] gi|171990822|gb|ACB61744.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sibiricum 255-15] Length = 347 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 78/330 (23%), Positives = 146/330 (44%), Gaps = 20/330 (6%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y +N W+P E+ M D+ W N L++ E+ KR Sbjct: 24 GETSSIVNWNDIAYPQFYSIYKQLLSNFWIPDEISMSKDMQQW---NQLSEREQDAFKRI 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G + +S+ I+ + S+ L A +E VH+ ++ Y+++SL ++ Sbjct: 81 IGLLSILDSVQTRYILES-AMFTSDASIHAILAIVAQQEVVHNQSYSYVLSSLVPLSEQN 139 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F++ ++ + + + L + + D E V +V EG+ FY+ Sbjct: 140 RIFDIAKDDDMVMKRNAFILDLYEDFQN--------DRTPENFAKSLVASIVLEGINFYS 191 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSR 262 GFA +L R KMVG + YI RDE H F ++ + E+P + F + Sbjct: 192 GFAFFYNLARHQKMVGTSTMISYIQRDELQHSYFISQLLRAVLTEHPDIDADGSFTKFVY 251 Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFP 321 A LEI ++ + + GL+ Y++++AN+R IGL+ L++ + E+ P Sbjct: 252 ATFERAVDLEIEWSEYVL-RDLDGLDVSEMRDYVKYLANKRLRVIGLDDLYEGHDEDVMP 310 Query: 322 WMSEVIDLKK---EKNFFETRVTEYQQGAE 348 W+ D + +FFE + Y + + Sbjct: 311 WIRAYSDDSMNATKSDFFEQKSRSYAKVTD 340 >gi|93005945|ref|YP_580382.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter cryohalolentis K5] gi|92393623|gb|ABE74898.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Psychrobacter cryohalolentis K5] Length = 377 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D + L+ E+ + NL + +S+ Sbjct: 33 KHPIFEQLIEKQLSFFWRPEEVDVSKDRMDF---GNLSSHEQHIFLSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + + +S PE ++ F E +HS ++ +II ++ D +F+ + I Sbjct: 90 RSPNVVLLPLVSIPELETWIETWTFSETIHSRSYTHIIRNIINDPAIVFDDIMQNEHILG 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A +Y L S + GT + ++ L + V E + F Sbjct: 150 RAADIAKYYDDLYYSSSLYNLYGAGTHTINGKQITIDLKSLKKQLYLCLMAVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLWT--KEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + KE Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIKLIARDEALHLTGTQHILNLMRIGRDDPEMVDIAKEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++S + +A E +A G +GLN QY+++I N R +GL F + Sbjct: 270 YEESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDILCQYIEYITNLRMEAVGLPVAFPNS 329 Query: 317 E-NPFPWMSEVIDLK 330 + NP PW++ + Sbjct: 330 KSNPIPWINTWLSSD 344 >gi|87120532|ref|ZP_01076426.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp. MED121] gi|86164175|gb|EAQ65446.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp. MED121] Length = 377 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 75/339 (22%), Positives = 138/339 (40%), Gaps = 25/339 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 ++ ++ + +V + K+ + + W P EV + D ++ Sbjct: 6 FNRKRFDSMKEPMFFGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSSDRKDFQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 65 --HLEAHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-----------------SPS 173 + +II ++ + G +F+ E IT +A ++ L Sbjct: 123 YTHIIRNIVNEPGVVFDDITENTEITKRAESVSKWYDDLILLVGLYNTLGPGIHNVPGKG 182 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 A ++ L V V E + FY FA + M G A+ + I RDE+L Sbjct: 183 DVNVNLKALKKALYLTMVSVNVLEAIRFYVSFACSFAFAERTLMEGNAKIIKLIARDEAL 242 Query: 234 HLNFGIDVINQI--KIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL ++N + ++P + KE + ++ + EA E +A G +GLN Sbjct: 243 HLTGTQHILNLMASGKDDPEMEDIAKECEDEAYQIFFEAAEQEKEWASYLFKDGSMIGLN 302 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 A QY+++I N R IGL P F+ NP PW++ + Sbjct: 303 AQILGQYVEYITNIRMQAIGLLPTFETKHNPIPWINAWL 341 >gi|326783480|ref|YP_004324017.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19] gi|310004983|gb|ADO99373.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19] Length = 388 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 76/362 (20%), Positives = 143/362 (39%), Gaps = 27/362 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + K + V + KY + W P EV +Q D + ++ Sbjct: 15 VFNKTKVDTKNQPMFFGQPLGVQRYDEYKYPVFDKLTQQQLGYFWRPEEVSLQKDRSDYQ 74 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 + L++ ++ + NL + +S+ +A + S PE + F E +HS Sbjct: 75 T---LSEQQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHSR 131 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------------- 175 ++ YII ++ + G++F+ + ++ ++A+ + + + Sbjct: 132 SYTYIIKNVYSNPGDVFDTILDDENVMSRASSVTESYDSFIEHAHQYDGSTMWDLAREGH 191 Query: 176 ---TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 + + L + EG+ FY FA + G M G A+ I RDES Sbjct: 192 QGGQWERRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDES 251 Query: 233 LHLNFGIDVI-NQIKIENPH--LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL +++ + ++P L +E Q M E A+A+ G +GLN Sbjct: 252 QHLVITQNILRKWSEGDDPEMKLIAQEEQSYVTEMFKRTVEEEKAWANYLFRDGSLIGLN 311 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQ 345 Y+++IANRR +G++P++ NP PW ++ K ++N ET + Y Sbjct: 312 DRLLYNYVEWIANRRMKAVGIKPIYDIPAKNNPLPWTEHWLNSKGQQNAPQETEIESYVV 371 Query: 346 GA 347 G Sbjct: 372 GG 373 >gi|326784253|ref|YP_004324793.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5] gi|310003484|gb|ADO97880.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5] Length = 388 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 85/359 (23%), Positives = 149/359 (41%), Gaps = 28/359 (7%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + +VN + M + V + KY + W P EV +Q D + +++ Sbjct: 18 KNKVNTKKQPMFFGQPLGVQRYDEYKYPVFDKLTQQQLGYFWRPEEVSLQKDRSDYQT-- 75 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ +++ + NL + +S+ +A + S PE + F E +HS ++ Sbjct: 76 -LSPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHSRSYT 134 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT---------------TG 177 YII ++ D GE+F+ + ++ +A+ + + + TG Sbjct: 135 YIIKNVYPDPGEVFDTILDDENVMERASSVTESYDDFINHAHEYDNGQMWNLARDGHTTG 194 Query: 178 TKDAD--QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 D + L + EG+ FY FA + G M G A+ I RDES HL Sbjct: 195 MYDRHELKRKLYRAVANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDESQHL 254 Query: 236 NFGIDVINQIKI-ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291 +++ + K ++P + KE + + M E +A +G +GLN Sbjct: 255 VITQNILRKWKEGDDPEMKEIAKEEKGWVQHMFERTVNEEKVWADYLFKQGSMIGLNDRL 314 Query: 292 CEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347 Y+++IANRR IGL+P+F NP PW ++ K ++N ET + Y G Sbjct: 315 LHNYVEWIANRRMKSIGLDPMFDIPAKNNPLPWTEHWLNSKGQQNAPQETEIESYVVGG 373 >gi|237747538|ref|ZP_04578018.1| ribonucleotide-diphosphate reductase subunit beta [Oxalobacter formigenes OXCC13] gi|229378900|gb|EEO28991.1| ribonucleotide-diphosphate reductase subunit beta [Oxalobacter formigenes OXCC13] Length = 376 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 79/347 (22%), Positives = 138/347 (39%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ VNV AR D K+ + + W P EV + Sbjct: 10 KNNQLLEPMFFGQP-VNV-------ARYDQQ-----KHEVFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++ L + E+ + NL + +S+ + +A+ +S PE ++ + Sbjct: 57 SRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ +I +A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPAIVFDDIVSNENIVRRATDISVYYDDLIEMTGYYHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + V E + FY FA + M G A+ + Sbjct: 174 GTHQVNGKTVNVSLYELKKKLYMCLMSVNVLEAIRFYVSFACSFAFAERELMEGNAKIIR 233 Query: 226 YIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N + KE +++S + A E +A Sbjct: 234 LIARDEALHLTGTQHMLNLMGSGEDDPDMAEIAKECREQSIDLFVRAAEQEKEWADYLFR 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R +G+ F+ NP PW++ + Sbjct: 294 DGSMIGLNRDILCQYVEYITNTRMQAVGMPLPFEIRSNPIPWINAWL 340 >gi|238784826|ref|ZP_04628827.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia bercovieri ATCC 43970] gi|238714242|gb|EEQ06253.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia bercovieri ATCC 43970] Length = 323 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 127/330 (38%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D + + Sbjct: 71 DTIQNTLGAPALIKDAMTPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + KA+ LQ+ + + L+ V E FY+GF + Sbjct: 131 ENGPLQKKADIILQHYH--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L + Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLERVDNSRRQEIKNFAFDLLQDLYD 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E+ Y + K VG ++++ + AN+ +G E LF ++ +P + Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322 >gi|238788616|ref|ZP_04632408.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia frederiksenii ATCC 33641] gi|238723211|gb|EEQ14859.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia frederiksenii ATCC 33641] Length = 383 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 137/347 (39%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ +V + K+ + + W P E+ + Sbjct: 17 KNNQLLEPMFFGQPV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 63 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D +++ L + E+ + NL + +S+ + +A+ +S PE ++ + Sbjct: 64 SRDRIDYQN---LPEHEKHIFISNLKYQTLLDSIQGRSPNIALLPIISIPELETWVETWS 120 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 121 FSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 180 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 181 GTHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 240 Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ ++P + +E QQ+ + A E +A Sbjct: 241 MIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFR 300 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R +GL F NP PW++ + Sbjct: 301 DGSMIGLNKEILCQYVEYITNIRMQAVGLGIPFNTRTNPIPWINSWL 347 >gi|227547058|ref|ZP_03977107.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212475|gb|EEI80364.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 330 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 62/351 (17%), Positives = 130/351 (37%), Gaps = 32/351 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+ Sbjct: 1 MAPISIPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ +T+DE + +++ +++ P AF E+V Sbjct: 55 SWQ---KMTEDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++ I ++L E F+ + KA L Y + D Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYY-------------EGDNP 158 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + + + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 159 YKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + + Q + +L+E E+ Y + + E+++++ N+ Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDRVGL---TDDVEKFLRYNGNKAL 273 Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +G LF NP + + + +FF + Y G + D Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324 >gi|238794995|ref|ZP_04638591.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia intermedia ATCC 29909] gi|238725698|gb|EEQ17256.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia intermedia ATCC 29909] Length = 376 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 75/347 (21%), Positives = 131/347 (37%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ +V + K+ + + W P E+ + Sbjct: 10 KNNQLLEPMFFGQSV-------------NVARFDQQKHAIFEKLIEKQLSFFWRPEEIDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + N L D E+ + NL + +S+ + +A+ +S PE ++ + Sbjct: 57 SRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 GT + ++ L + E + FY FA + M G A+ + Sbjct: 174 GTHQVNGKTVIVNLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ E QQ+ + A E +A Sbjct: 234 MIARDEALHLTGTQHILNLMRSGEDDPEMAEIAIECQQQCYDLFVLAAQQEKEWAEYLFR 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I N R +GL F NP PW++ + Sbjct: 294 DGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFATRTNPIPWINSWL 340 >gi|320095222|ref|ZP_08026924.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 178 str. F0338] gi|319977850|gb|EFW09491.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 178 str. F0338] Length = 319 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +DL W++ L DE+ M R Sbjct: 10 NWNRIQDDKDLEVWD---RLTGNFWLPEKVPLSNDLPSWQT---LNKDEQTMTNRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++L +++ P AF E+VH+ ++ I ++L E E F Sbjct: 64 TLLDTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFR 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA Y D + + V + E FY+GF Sbjct: 124 WSNENEALQRKAQIIKSYY---------------DGDDAEKRKVASTMLESFLFYSGFYA 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + E+ + + + ++L+E Sbjct: 169 PMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVGESTQERRDDLKDYTYSLLYE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + ++++++ AN+ +G E LF + NP + Sbjct: 229 LYENEEQYTEDLYDPLGL---TEDVKKFLRYNANKALMNLGYEALFPHDATDVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 286 LSPNADENHDFFSGSGSSYVMGEVVDTEDEDWD 318 >gi|190574752|ref|YP_001972597.1| ribonucleotide-diphosphate reductase subunit beta [Stenotrophomonas maltophilia K279a] gi|190012674|emb|CAQ46302.1| putative ribonucleoside-diphosphate reductase beta chain [Stenotrophomonas maltophilia K279a] Length = 346 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 19/348 (5%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 T L I+ E R ++N ++ + + Y + Y N W+P EV M+ Sbjct: 2 ATPLDRIKILEPRHPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + L E+ +G A+ +S I + ++++P Sbjct: 62 LDARQY---GELNAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117 Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 +E +H+ ++ Y++ S+ ++ +F + R P+I + + ++ Sbjct: 118 QEVIHNESYSYVLASITDLPNQNRIFEIARTHPTIIKRNAPIMGAYDD--------FMRE 169 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E L + + EG+ FY+GFA ++ R N+M G + +I RDE H F + Sbjct: 170 KTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQNRMNGTGKIISFINRDELAHTKFISE 229 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 +I I ENP L T E A LE ++ E + G G++ +Y+++ A Sbjct: 230 LIRAIIGENPELQTNELTAYVHQSFEHAIELETQWSSEVL-DGIDGIDVDEMVRYVKYRA 288 Query: 301 NRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 N+ +G+E L+ T+N PW+ D + + +FFE R Y++ Sbjct: 289 NKMAGMLGIERLYSDTTDNVMPWIKAYADNFTETKTDFFEMRNASYKK 336 >gi|241760495|ref|ZP_04758588.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria flavescens SK114] gi|241318999|gb|EER55501.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria flavescens SK114] Length = 377 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 90 RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIA 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G+ + ++ L + V E + F Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGSHNIGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EF 257 Y FA + M G A+ + I RDE+LHL ++N ++ E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIAVEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY- 315 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QDECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGA 329 Query: 316 TENPFPWMSEVIDLK 330 T+NP PW++ + Sbjct: 330 TQNPIPWINAWLSSD 344 >gi|15837799|ref|NP_298487.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa 9a5c] gi|28198393|ref|NP_778707.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa Temecula1] gi|9106169|gb|AAF84007.1|AE003954_4 ribonucleoside-diphosphate reductase beta chain [Xylella fastidiosa 9a5c] gi|28056463|gb|AAO28356.1| ribonucleoside-diphosphate reductase beta chain [Xylella fastidiosa Temecula1] Length = 346 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 77/338 (22%), Positives = 144/338 (42%), Gaps = 19/338 (5%) Query: 14 EKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E R ++N ++ + + Y + Y N W+P EV M+ D + Sbjct: 12 EPRNPNRSTGIINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---G 68 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ E+ +G A+ +S I + ++++P +E +H+ ++ Sbjct: 69 ELSAREKNAYDAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYS 127 Query: 133 YIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 Y++ S+ ++ +F + R P+I + +Q ++ E L Sbjct: 128 YVLASITDLANQNRVFEIARTHPTILKRNAPIMQAYDD--------FMREKTAETLLYSL 179 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 + + EG+ FY+GFA +L R N+M G + +I RDE H F +VI I ENP Sbjct: 180 IQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENP 239 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 L T A LE + E + G G++ +Y+++ AN+ +G++ Sbjct: 240 ELQTDALTDYVHQAFAHAIELETQWTGEVL-DGIDGIDVEEMIRYVKYRANKMAGMLGIQ 298 Query: 311 PLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 L+ + T+N PW+ D + + +FFE R Y++ Sbjct: 299 TLYTETTDNVMPWIRAYADNFTETKTDFFEMRNASYKK 336 >gi|326782536|ref|YP_004323092.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1] gi|310002750|gb|ADO97149.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1] Length = 386 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 84/358 (23%), Positives = 144/358 (40%), Gaps = 28/358 (7%) Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 +VN + M + V + KY + W P EV +Q D + +++ Sbjct: 17 NKVNTKKQPMFFGQPLGVQRYDSYKYPVFDKLTQQQLGYFWRPEEVSLQKDRSDYQT--- 73 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L+D+++ + NL + +S+ +A + S PE + F E VHS ++ Y Sbjct: 74 LSDEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMVHSRSYTY 133 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG---------------- 177 II ++ D E+F+ + + ++A+ + + Sbjct: 134 IIKNVYSDPSEVFDTILDDEKVMSRASSVTESYDDFIQQAHQYDGSTMWDLAREGHTAGQ 193 Query: 178 -TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236 + + L + EG+ FY FA + G M G A+ I RDES HL Sbjct: 194 YERRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDESQHLV 253 Query: 237 FGIDVINQIKI-ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292 +++ + K ++P + KE Q M E +A +G +GLN Sbjct: 254 ITQNILRKWKEGDDPEMAVIAKEEQPFVAEMFKRTVNEEKMWADYLFKQGSMIGLNDRLL 313 Query: 293 EQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347 Y+++IANRR IGL+P+F NP PW ++ K ++N ET + Y G Sbjct: 314 HNYVEWIANRRMKAIGLDPIFDVPAKNNPLPWTEHWLNSKGQQNAPQETEIESYVVGG 371 >gi|283457964|ref|YP_003362570.1| ribonucleotide reductase subunit beta [Rothia mucilaginosa DY-18] gi|283133985|dbj|BAI64750.1| ribonucleotide reductase, beta subunit [Rothia mucilaginosa DY-18] Length = 325 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 66/333 (19%), Positives = 129/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P +VP+ +D+ WK+ LT++E+ + R Sbjct: 16 NWNRIEDEKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVFTGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ AF E+VH+ ++ I ++L + E F Sbjct: 70 TLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFR 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L Y + V + E FY+GF Sbjct: 130 WASENEHLQKKAKIVLSYY---------------TGDDPLKKKVASTLLESFLFYSGFYL 174 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q + E ++ + +L+E Sbjct: 175 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKFQQGLAKESAERQAELKEYTFNLLYE 234 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEV 326 E+AY H VG + ++++ + AN+ +G EP+F + N P + Sbjct: 235 LYENEVAYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEPMFPASVTNVSPAILSA 291 Query: 327 I--DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + + +FF + Y G + WD Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324 >gi|90581239|ref|ZP_01237037.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum S14] gi|90437610|gb|EAS62803.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum S14] Length = 377 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 73/314 (23%), Positives = 131/314 (41%), Gaps = 28/314 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L D E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ + +F+ E I +A Sbjct: 92 PNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIIKRA 151 Query: 160 NWALQYTQTLSSPS-----------------FTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 +Y L S + FT + ++ L E + FY Sbjct: 152 GDISKYYDALISATNDYHRYGEGSHSANGVPFTVNLHELKKKLYLCLMSVNA-LEAIRFY 210 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQ 258 FA + M G A+ + I RDE+LHL ++N ++ ++P + E + Sbjct: 211 VSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILNLLRNGHDDPEMAEIAAECE 270 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-T 316 Q+ + A E +A G +GLN QY+++I N R +GL P + T Sbjct: 271 QECFDIFKAAAEQEKEWADYLFKDGSMIGLNKQILCQYVEYITNLRMVAVGLRPAYDGAT 330 Query: 317 ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 331 QNPIPWINSWLSSD 344 >gi|284799957|ref|ZP_05985309.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria subflava NJ9703] gi|284796454|gb|EFC51801.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria subflava NJ9703] Length = 377 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 90 RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIA 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201 +A Y L + G+ + ++ L + V E + F Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGSHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIANEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QDECFNLFKKAAEQEKEWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGA 329 Query: 316 TENPFPWMSEVIDLK 330 T+NP PW++ + Sbjct: 330 TQNPIPWINAWLSSD 344 >gi|153949141|ref|YP_001400043.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis IP 31758] gi|152960636|gb|ABS48097.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pseudotuberculosis IP 31758] Length = 323 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 127/330 (38%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + LT E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LTPHEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L L D + + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KA+ LQ+ + + L+ V E FY+GF + Sbjct: 131 DNGPLQKKADIILQHYH--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + + +E + + +L + Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDSVHRQEIKNFAFDLLQDLYD 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E+ Y + VG ++++ + AN+ +G E LF ++ +P + Sbjct: 236 NEVRYTEDLYDH--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322 >gi|225075859|ref|ZP_03719058.1| hypothetical protein NEIFLAOT_00882 [Neisseria flavescens NRL30031/H210] gi|224952805|gb|EEG34014.1| hypothetical protein NEIFLAOT_00882 [Neisseria flavescens NRL30031/H210] Length = 388 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 130/315 (41%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 44 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 100 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 101 RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNKYIIA 160 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G+ + ++ L + V E + F Sbjct: 161 RAEDIACYYDDLIEYTQYYNLLGEGSHNIGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 220 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 221 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIANEL 280 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 281 QDECFNLFKKAAEQEKEWAAYLFKDGSMIGLNKEILAQYVEYITNLRMQAVGLPAGFEGA 340 Query: 316 TENPFPWMSEVIDLK 330 T+NP PW++ + Sbjct: 341 TQNPIPWINAWLSSD 355 >gi|238796650|ref|ZP_04640156.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia mollaretii ATCC 43969] gi|238719381|gb|EEQ11191.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia mollaretii ATCC 43969] Length = 323 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 128/330 (38%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D + + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + KA+ LQ+ + + L+ V E FY+GF + Sbjct: 131 ENGPLQKKADIILQHYH--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + + +E + + +L + Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNNRRQEIKNFAFDLLQDLYD 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E+ Y + K VG ++++ + AN+ +G E LF ++ +P + Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPSSQAAVSPAILAALSP 292 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322 >gi|23335914|ref|ZP_00121145.1| COG0208: Ribonucleotide reductase, beta subunit [Bifidobacterium longum DJO10A] gi|189440326|ref|YP_001955407.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium longum DJO10A] gi|189428761|gb|ACD98909.1| Ribonucleotide reductase beta subunit [Bifidobacterium longum DJO10A] Length = 330 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 63/351 (17%), Positives = 129/351 (36%), Gaps = 32/351 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+ Sbjct: 1 MAPISIPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ +T+DE + R +++ +++ P AF E+V Sbjct: 55 SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++ I ++L E F+ + KA L Y + + Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYE---------------GD 156 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 V + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + + Q + +L+E E+ Y + + E+++++ N+ Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDRVDL---TDDVEKFLRYNGNKAL 273 Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +G LF NP + + + +FF + Y G + D Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324 >gi|269102947|ref|ZP_06155644.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268162845|gb|EEZ41341.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 377 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 132/313 (42%), Gaps = 26/313 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L D E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSGDRIDY---NNLPDHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I +A Sbjct: 92 PNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVSNEYIIKRA 151 Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203 +Y L S + GT D ++ L + E + FY Sbjct: 152 GDISRYYDELISATNDYHRLGEGTHTVDGKTITINLRDLKKKLYLCIMSVNALEAIRFYV 211 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQ 259 FA + M G A+ + I RDE+LHL ++N ++ ++P + KE + Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILNLLRNGHDDPEMAEIAKESEA 271 Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTE 317 + + A E +A G +GLN QY+++I N R + +GLE + T+ Sbjct: 272 ECFDIFKRAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNLRMNAVGLEHAYTGATQ 331 Query: 318 NPFPWMSEVIDLK 330 NP PW++ + Sbjct: 332 NPIPWINSWLSSD 344 >gi|311064961|ref|YP_003971687.1| ribonucleoside-diphosphate reductase subunit beta NrdF [Bifidobacterium bifidum PRL2010] gi|310867281|gb|ADP36650.1| NrdF Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium bifidum PRL2010] Length = 330 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 61/351 (17%), Positives = 130/351 (37%), Gaps = 32/351 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+ Sbjct: 1 MAPISVPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ ++DDE + +++ +++ P AF E+V Sbjct: 55 SWQ---KMSDDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++ I ++L + F+ + KA L Y + D Sbjct: 112 HAKSYSSIFSTLCSTKEIDTAFDWSERNEFLQKKAEIVLDYY-------------EGDSP 158 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 159 LKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQR 216 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 +E ++ + +L+E E+ Y + + E+++++ N+ Sbjct: 217 GLERVSDAKREEMREYTYNLLNELYDNEVEYTESLYERVGL---TDDVEKFLRYNGNKAL 273 Query: 305 HQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +G LF NP + + + +FF + Y G + D Sbjct: 274 MNLGYPALFPAEACDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324 >gi|269213593|ref|ZP_05982340.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria cinerea ATCC 14685] gi|269146056|gb|EEZ72474.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria cinerea ATCC 14685] Length = 377 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 132/315 (41%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I A Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEYIIA 149 Query: 158 KANWALQYTQTLSSPS----------FTTGTKDAD------QEFLQDLFVFYVVFEGMWF 201 +A Y L + G K + ++ L + V E + F Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKLVNVSLRELKKKLYLCLMCVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + +E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRSGVDDPEMAEIAEEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q++ + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 270 QEECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPIGFEGA 329 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 330 NQNPIPWINAWLSSD 344 >gi|71276518|ref|ZP_00652793.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon] gi|71900741|ref|ZP_00682863.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|170729741|ref|YP_001775174.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa M12] gi|71162695|gb|EAO12422.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon] gi|71729511|gb|EAO31620.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|167964534|gb|ACA11544.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M12] Length = 349 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 78/338 (23%), Positives = 144/338 (42%), Gaps = 19/338 (5%) Query: 14 EKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E R ++N ++ + + Y + Y N W+P EV M+ D + Sbjct: 15 EPRNPNRSTGIINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---G 71 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ E+ +G A+ +S I + ++++P +E +H+ ++ Sbjct: 72 ELSAREKNAYDAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYS 130 Query: 133 YIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 Y++ S+ ++ +F + R P+I + +Q ++ E L Sbjct: 131 YVLASITDLANQNRVFEIARTHPTILKRNAPIMQAYDD--------FMREKTAETLLYSL 182 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 + + EG+ FY+GFA +L R N+M G + +I RDE H F +VI I ENP Sbjct: 183 IQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENP 242 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 L T A LE + E + G G++ +Y+++ AN+ +G+E Sbjct: 243 ELQTDALTDYVHQAFAHAIELETQWTGEVL-NGIDGIDVEEMIRYVKYRANKMAGMLGIE 301 Query: 311 PLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 L+ + T+N PW+ D + + +FFE R Y++ Sbjct: 302 TLYTETTDNVMPWIRAYADNFTETKTDFFEMRNASYKK 339 >gi|329119976|ref|ZP_08248648.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327463889|gb|EGF10203.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 384 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 127/314 (40%), Gaps = 28/314 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P E+ + D + + L + E+ + NL + +S+ + Sbjct: 42 EVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRS 98 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ + I A+A Sbjct: 99 PNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARA 158 Query: 160 NWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 Y L + ++ ++ L V E + FY Sbjct: 159 EDIACYYDDLIEYTQYYNLLGEGVHQVGGKTVVVKLRELKKKLYLCLMCVNV-LEAIRFY 217 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQ 258 FA + M G A+ + I RDE+LHL ++N ++ E Q Sbjct: 218 VSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGADDPEMAEIAVELQ 277 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316 + + +A E +A G +GLN QY+++I N R +GL+P F + Sbjct: 278 DECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKDILCQYVEYITNHRMIAVGLDPAFPASN 337 Query: 317 ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 338 QNPIPWINAWLSSD 351 >gi|172054963|ref|YP_001806290.1| ribonucleoside-diphosphate reductase subunit beta [Cyanothece sp. ATCC 51142] gi|171701244|gb|ACB54224.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp. ATCC 51142] Length = 347 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 82/349 (23%), Positives = 150/349 (42%), Gaps = 23/349 (6%) Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 SPI + N + + + + +V L +YGWA Y + +W+P + D Sbjct: 9 SPIFNPTGKDNKEKRHLWGGDTTNVINLNETRYGWARTIYQTMREGYWIPQRTDLSQDKL 68 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L ER +K L + +S+ NI + R+++ PE R L Q +EA+ Sbjct: 69 DY---VNLIPGERRALKGILSYLNFLDSVQVANIPE-LSRYITAPEARMCLAEQTSQEAM 124 Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H T+QYI S+ + + E+++ +++ + + + Y QTL+ + E Sbjct: 125 HGETYQYITESIIPENEQHEVYDFWKKDLLLNERCEFIASYYQTLAD--------NPCGE 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + EG+ FY GF +L + ++ G A+ + I DE H++ +I + Sbjct: 177 TYFMALIGDYLLEGLLFYQGFLFFYNLASSQRLAGCAKLIKQINMDELTHVSLYQKLITE 236 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 K + + + + + EI + + +G++ S E Y +++AN R Sbjct: 237 AKTKFSY-----SEDEITELFVNTVEKEIEWTNHIFDGQILGVSEASTEAYTKYLANLRL 291 Query: 305 HQIGLEPLFKYTENP---FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 IG+ ++ ENP W K + FFET VT Y Q +K Sbjct: 292 KAIGISAIYPEVENPYAHLDWADFKGIGKSKAAFFETEVTGYAQPTAVK 340 >gi|315605404|ref|ZP_07880447.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 180 str. F0310] gi|315312973|gb|EFU61047.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp. oral taxon 180 str. F0310] Length = 329 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 123/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +DL WK+ LT E+LM R Sbjct: 20 NWNKIQDEKDLEVWDRLTGNFWLPEKVPLSNDLPSWKT---LTKGEQLMTNRVFTGLTLL 76 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 ++L +++ P AF E+VH+ ++ I ++L E E F Sbjct: 77 DTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFRWSN 136 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E ++ KA Y D + + V + E FY+GF + Sbjct: 137 ENAALQKKAEIIKSYY---------------DGDDAEKRKVASTMLESFLFYSGFYAPMY 181 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + E+ + + + ++L+E Sbjct: 182 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVNESSQERQDDLRDYTYSLLYELYE 241 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E Y + + ++++++ AN+ +G E LF + NP + Sbjct: 242 NEEQYTEDLYDPLGL---TEDVKKFLRYNANKALMNLGYEALFPHDATNVNPAILAALSP 298 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 299 NADENHDFFSGSGSSYVMGEVVDTEDEDWD 328 >gi|238021387|ref|ZP_04601813.1| hypothetical protein GCWU000324_01286 [Kingella oralis ATCC 51147] gi|237868367|gb|EEP69373.1| hypothetical protein GCWU000324_01286 [Kingella oralis ATCC 51147] Length = 384 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 80/350 (22%), Positives = 140/350 (40%), Gaps = 38/350 (10%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NN L P+ G+ VNV AR D KY + + W P EV + Sbjct: 18 NNALLEPMFLGQP-VNV-------ARYDQQ-----KYETFEKLIEKQISFFWRPEEVDLS 64 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + + L + E+ + NL + +S+ + + + +S PE ++ +F Sbjct: 65 RDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQGRSPNVGLLPLVSLPELETWIETWSF 121 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG----- 177 E +HS ++ +II ++ D +F+ + I A+A Y L + Sbjct: 122 FETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYFNLLGVG 181 Query: 178 -----------TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 ++ ++ L + V E + FY FA + M G A+ + Sbjct: 182 EHRVNGKTIVVSERELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELMEGNAKIIKL 241 Query: 227 IMRDESLHLNFGIDVINQIKIENP----HLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I RDE+LHL ++N ++ E Q + + +A E +A Sbjct: 242 IARDEALHLTSTQHMLNLMRGGAEGAEWAEIAAELQNECFELFKKAAEQEKEWAEYLFKD 301 Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330 G +GLN QY+++I N R +GL+P F+ T+NP PW++ + Sbjct: 302 GSMIGLNKDILCQYVEYITNARMLAVGLQPAFEKATQNPIPWINTWLSSD 351 >gi|294637129|ref|ZP_06715438.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella tarda ATCC 23685] gi|291089663|gb|EFE22224.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella tarda ATCC 23685] Length = 376 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 127/310 (40%), Gaps = 25/310 (8%) Query: 40 GWAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 +EK + + W P EV + D ++ L D E+ + NL + +S+ Sbjct: 34 HEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPDHEKHIFISNLKYQTLLDSIQGR 90 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I + Sbjct: 91 SPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVTDPSVVFDDIVSNEEILKR 150 Query: 159 ANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFY 202 A Y L + GT + ++ L + E + FY Sbjct: 151 ARDISVYYDDLIESTGYYHLLGEGTHQVNGKTVIVNLRDLKKKLYLCLMSVNALEAIRFY 210 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQ 258 FA + M G A+ + I RDE+LHL ++N ++ ++P + E + Sbjct: 211 VSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHILNLMRSGQDDPEMAEIAAECE 270 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 271 TQCYDLFVQAAQQEKDWASYLFRDGSMIGLNRDILCQYVEYITNIRMQAVGLSLPFETRS 330 Query: 318 NPFPWMSEVI 327 NP PW++ + Sbjct: 331 NPIPWINAWL 340 >gi|261820460|ref|YP_003258566.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium wasabiae WPP163] gi|261604473|gb|ACX86959.1| Ribonucleoside-diphosphate reductase [Pectobacterium wasabiae WPP163] Length = 320 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 124/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + L ER + R Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWGT---LNPRERQLTIRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ + P L +F EAVH+ ++ I ++L L + + + Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P++ K++ L + ++ + L V E FY+GF + Sbjct: 128 ENPALQKKSDIILSHYRS--------------DDPLMKKV-ASVFLESFLFYSGFYLPMY 172 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + ++ + + +L + Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKADPARQQQVKNFAYDLLQDLYD 232 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327 E+ Y E VG ++++ + AN+ +G E LF + NP + Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319 >gi|254672337|emb|CBA05511.1| ribonucleoside-diphosphate reductase beta chain [Neisseria meningitidis alpha275] Length = 345 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 70/309 (22%), Positives = 125/309 (40%), Gaps = 25/309 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E ITA Sbjct: 97 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEYITA 156 Query: 158 KANWALQYTQTLSSPS-----FTTGTKD-----------ADQEFLQDLFVFYVVFEGMWF 201 +A Y L + G + ++ L + V E + F Sbjct: 157 RAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPITVSLRGLKKKLYLCLMCVNVLEAIRF 216 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ E Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLMRSGVDDSEMAEIAAEL 276 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + +A E +A G +GLN QY+++I N R +GL F+ Sbjct: 277 QDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKEILSQYVEYITNLRMQAVGLPAGFEGA 336 Query: 317 -ENPFPWMS 324 +NP PW++ Sbjct: 337 NQNPIPWIN 345 >gi|158430770|pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution gi|158430771|pdb|2RCC|B Chain B, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution gi|158430772|pdb|2RCC|C Chain C, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution Length = 346 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 78/335 (23%), Positives = 150/335 (44%), Gaps = 16/335 (4%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N + S+V +++ WA+ Y + N W P E+ D + + LT+ Sbjct: 17 NASTGILNGKSSNVLNWDDVRFSWAYPLYKNXLANFWTPFEINXSHDAKQFPT---LTET 73 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ K+ +G A +S+ + +L++ +F+E VH+ ++ Y+++S Sbjct: 74 EQEAFKKIIGLLAFLDSVQTD-YSXRAAEYLTDSSLAALXSVLSFQEVVHNQSYSYVLSS 132 Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 L + E+F ++ + + + + + + + + V+ V+ Sbjct: 133 LVPKATQDEIFEYWKHDDVLKERNEFIIDGYEKFVD--------NPTPKTFLESIVYDVI 184 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG+ FY+GFA +L R K V + YI RDE LH+ ++ ++ +E P L T+ Sbjct: 185 LEGLNFYSGFAFFYNLARNQKXVSTSTXINYINRDEQLHVYLFTNIFKELLVEFPELNTE 244 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 E + +T L +A LE + + G+N E Y+ FIAN+R Q+G E + Sbjct: 245 ETKTFVKTTLXKAADLEKDWFRYIIGDKIPGINPEDXETYISFIANKRAVQLGXEKPYPE 304 Query: 316 TE-NPFPWMSEVIDLK-KEKNFFETRVTEYQQGAE 348 + NP W+ D+ + +FFE + +Y + + Sbjct: 305 IKHNPXKWIRAYEDVNSGKSDFFEQKSRQYAKVSA 339 >gi|295395248|ref|ZP_06805456.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium mcbrellneri ATCC 49030] gi|294972010|gb|EFG47877.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium mcbrellneri ATCC 49030] Length = 324 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 64/344 (18%), Positives = 126/344 (36%), Gaps = 31/344 (9%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + +K L + D ++ E + N W+P +VP+ +D+ W + LTDDE Sbjct: 1 MSEKLKLVSHVDAINWNRIEDDVDMEVWDRLTANFWLPEKVPLSNDVQSWAT---LTDDE 57 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +L+ R +++ +++ P AF E+VH+ ++ I ++L Sbjct: 58 KLLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTL 117 Query: 139 GLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 E F E ++ KA + Y + + V + Sbjct: 118 CNTREIDEAFRWSTENQNLQKKAQIIVDYYR---------------GDDPLKRKVASTLL 162 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 E FY+GF + K+ A+ + I+RDE++H + + E Sbjct: 163 ESFLFYSGFYLPMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQRALANESTERRDE 222 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + + +L++ E+ Y H+ + ++++ + AN+ +G E +F T Sbjct: 223 LKDYTFALLYDLYENEVQYTHDLYDSVGLS---EDVKKFLNYNANKALMNLGYEAMFPST 279 Query: 317 ---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 NP + + +FF + Y G WD Sbjct: 280 VTDVNPAILSALSPSSDENHDFFSGSGSSYVIGKAENTEDDDWD 323 >gi|153835812|ref|ZP_01988479.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio harveyi HY01] gi|148867435|gb|EDL66832.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio harveyi HY01] Length = 377 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 72/313 (23%), Positives = 127/313 (40%), Gaps = 26/313 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L + E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I +A Sbjct: 92 PNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRA 151 Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203 Y L + + G + ++ L + E + FY Sbjct: 152 KDIAHYYDDLIQATNDYHRYGEGEHVLNGETVKVSLYDLKKKLYICLMSVNALEAIRFYV 211 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQ 259 FA + M G A+ + I RDE+LHLN +IN ++ +E +Q Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFSFMQIAEEAKQ 271 Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317 + + EA E +A G +GLN QY+++I N R +GL + T Sbjct: 272 ECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEATS 331 Query: 318 NPFPWMSEVIDLK 330 NP PW++ + Sbjct: 332 NPIPWINAWLSSD 344 >gi|71901120|ref|ZP_00683227.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|182681036|ref|YP_001829196.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa M23] gi|71729125|gb|EAO31249.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1] gi|182631146|gb|ACB91922.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M23] gi|307579504|gb|ADN63473.1| ribonucleotide-diphosphate reductase subunit beta [Xylella fastidiosa subsp. fastidiosa GB514] Length = 349 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 77/338 (22%), Positives = 144/338 (42%), Gaps = 19/338 (5%) Query: 14 EKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 E R ++N ++ + + Y + Y N W+P EV M+ D + Sbjct: 15 EPRNPNRSTGIINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---G 71 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L+ E+ +G A+ +S I + ++++P +E +H+ ++ Sbjct: 72 ELSAREKNAYDAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYS 130 Query: 133 YIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190 Y++ S+ ++ +F + R P+I + +Q ++ E L Sbjct: 131 YVLASITDLANQNRVFEIARTHPTILKRNAPIMQAYDD--------FMREKTAETLLYSL 182 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 + + EG+ FY+GFA +L R N+M G + +I RDE H F +VI I ENP Sbjct: 183 IQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENP 242 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 L T A LE + E + G G++ +Y+++ AN+ +G++ Sbjct: 243 ELQTDALTDYVHQAFAHAIELETQWTGEVL-DGIDGIDVEEMIRYVKYRANKMAGMLGIQ 301 Query: 311 PLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 L+ + T+N PW+ D + + +FFE R Y++ Sbjct: 302 TLYTETTDNVMPWIRAYADNFTETKTDFFEMRNASYKK 339 >gi|4389291|pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a Length = 375 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 77/367 (20%), Positives = 144/367 (39%), Gaps = 28/367 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 5 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 64 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 121 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 F +II ++ D +F+ I +A Y L + GT + Sbjct: 122 FTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKT 181 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + Y FA + M G A+ + I RD +LH Sbjct: 182 VTVSLRELKKKLYLCLMSVNALEAIRXYVSFACSFAFAERELMEGNAKIIRLIARDAALH 241 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ ++P + +E +Q+ + +A E +A G +GLN Sbjct: 242 LTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNK 301 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 302 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 361 Query: 346 GAELKWD 352 +E+ D Sbjct: 362 DSEVDTD 368 >gi|218709884|ref|YP_002417505.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio splendidus LGP32] gi|218322903|emb|CAV19080.1| Ribonucleoside-diphosphate reductase, beta subunit [Vibrio splendidus LGP32] Length = 323 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 64/341 (18%), Positives = 118/341 (34%), Gaps = 30/341 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 K+M + + G E + N W+P +VP+ +D+ WK LT++E+ + Sbjct: 2 KKMESGPVQAINWNRMIDGKDLEIWNRLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTL 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 R +++ A+ P L AF EAVH+ ++ + ++L Sbjct: 59 TIRVFTGLTLLDTIQNTVGAPALMEDARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTT 118 Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 E F +E P + KA L P V V E Sbjct: 119 PQIDEAFRWAQENPLLQKKAQIVLDDYLAEGDP--------------LKKKVASVFLESF 164 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 FY+GF + K+ A+ + I+RDE++H + + Sbjct: 165 LFYSGFYLPMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAYQSLSEEEQARVKD 224 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--- 316 ++ +++ +E Y + + ++ + AN+ +G E LF Sbjct: 225 EAYSLMFSLYEIETQYTESLYDPVGL---TEDVKHFLHYNANKALMNLGFEALFPDELCQ 281 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 NP + + + +FF + Y G + WD Sbjct: 282 VNPAIMAALSPNADENHDFFSGSGSSYVIGKAVATEDDDWD 322 >gi|330445621|ref|ZP_08309273.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489812|dbj|GAA03770.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 377 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 73/313 (23%), Positives = 130/313 (41%), Gaps = 26/313 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L D E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ + +F+ E I +A Sbjct: 92 PNVALLPIVSIPELETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIIKRA 151 Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203 +Y L + + F G AD ++ L + E + FY Sbjct: 152 GDISKYYDALIAATNDYHRFGEGNHSADGVPFTVSLRELKKKLYLCLMSVNALEAIRFYV 211 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQ 259 FA + M G A+ + I RDE+LHL ++N ++ E +Q Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILNLLRTGQDDPEMAEIAVECEQ 271 Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TE 317 + + A E +A G +GLN QY+++I N R +GL P ++ T+ Sbjct: 272 ECFDIFKSAAEQEKDWADYLFKDGSMIGLNKQILCQYVEYITNLRMSAVGLRPAYEGATQ 331 Query: 318 NPFPWMSEVIDLK 330 NP PW++ + Sbjct: 332 NPIPWINSWLSSD 344 >gi|117619492|ref|YP_856857.1| ribonucleotide-diphosphate reductase subunit beta [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560899|gb|ABK37847.1| ribonucleoside-diphosphate reductase, beta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 377 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 72/329 (21%), Positives = 132/329 (40%), Gaps = 26/329 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + W P EV + D ++ L E+ + NL + +S+ Sbjct: 33 KHEVFERLIEKQLSFFWRPEEVDVSHDRIDFQ---ALPPHEQHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ ++F+ I Sbjct: 90 RSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIVNTPAQVFDDIVTNEQILK 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201 +A + L + GT ++ L + E + F Sbjct: 150 RAGSISHFYDDLIEATALYNLHGEGTHRVAGRDVTITLRELKKKLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHMLNLMRSGQDDPEMAEIAAEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q + EA + E +A G +GLN QY+++I N R + +GL+P F Sbjct: 270 EQACFELFKEAAIQEKEWAEYLFQDGSMIGLNKDILCQYVEYITNLRMNAVGLQPAFAGA 329 Query: 317 E-NPFPWMSEVIDLKKEKNF-FETRVTEY 343 + NP PW++ + + E V+ Y Sbjct: 330 KQNPIPWINTWLSSDNVQVAPQEVEVSSY 358 >gi|156975012|ref|YP_001445919.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio harveyi ATCC BAA-1116] gi|156526606|gb|ABU71692.1| hypothetical protein VIBHAR_02734 [Vibrio harveyi ATCC BAA-1116] Length = 377 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 73/313 (23%), Positives = 127/313 (40%), Gaps = 26/313 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L D E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I +A Sbjct: 92 PNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRA 151 Query: 160 NWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYT 203 Y L + + G + ++ L + E + FY Sbjct: 152 KDIAHYYDDLIQATNDYHRYGEGEHVLNGETVKVSLYDLKKKLYICLMSVNALEAIRFYV 211 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQQ 259 FA + M G A+ + I RDE+LHLN +IN ++ +E +Q Sbjct: 212 SFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFLFMQIAEEEKQ 271 Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317 + + EA E +A G +GLN QY+++I N R +GL + T Sbjct: 272 ECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEATS 331 Query: 318 NPFPWMSEVIDLK 330 NP PW++ + Sbjct: 332 NPIPWINAWLSSD 344 >gi|86148040|ref|ZP_01066342.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] gi|85834173|gb|EAQ52329.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. MED222] Length = 320 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 116/333 (34%), Gaps = 33/333 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+++ K W N W+P +VP+ +D+ WK LT++E+ + R Sbjct: 10 NWNRMIDGKDLEIWN---RLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A+ P L AF EAVH+ ++ + ++L E F Sbjct: 64 TLLDTIQNTVGAPALMEDARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFR 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P + KA L P V V E FY+GF Sbjct: 124 WAEENPLLQKKAQIILDDYLAEGDP--------------LKKKVASVFLESFLFYSGFYL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + ++ +++ Sbjct: 170 PMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAYQSLSEEEQARVKDEAYSLMFS 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 +E Y + + ++ + AN+ +G E LF NP + Sbjct: 230 LYEIETQYTESLYDPVGL---TEDVKHFLHYNANKALMNLGFEALFPDELCQVNPAIMAA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVATEDDDWD 319 >gi|254819781|ref|ZP_05224782.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium intracellulare ATCC 13950] Length = 322 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 126/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D A W++ LT E+ R Sbjct: 13 NWNRLPDPKDAQVWD---RLTGNFWLPEKVPLSNDSASWQT---LTAQEQQTTVRVFTGL 66 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++ A +++ P L AF E+VH+ ++ I ++L + F+ Sbjct: 67 TLLDTTQATVGAVSMIADAVTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTRQIDDAFD 126 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + Y + + V+ E FY+GF Sbjct: 127 WSERNPHLQRKAQIVVDYYR---------------GDDALKRKAASVMLESFLFYSGFYL 171 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E ++ + +L+ Sbjct: 172 PMYWSSRGKLTNTADIIRLIIRDEAVHGFYIGYKCQRGLAELSEPERSGHREYTYELLNA 231 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI YAH+ +G YM+F ANR +G EP+F ++ NP + Sbjct: 232 LYTNEIDYAHDLYDG--LGWT-DDVLPYMRFNANRALANLGYEPMFGPSDCRVNPAVLSA 288 Query: 325 EVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + +FF + Y G+ + WD Sbjct: 289 LDPGAGENHDFFSGSGSSYVIGSHQATEDADWD 321 >gi|212716021|ref|ZP_03324149.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM 16992] gi|212661388|gb|EEB21963.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM 16992] Length = 330 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 65/352 (18%), Positives = 132/352 (37%), Gaps = 34/352 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI +R+ + D+ + + N+L K W+ N W+P +VP+ +DL Sbjct: 1 MAPISVPRQRIKLIDRV---SAINWNKLEDDKDLEVWD---RLTGNFWLPEKVPVSNDLP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +W+ +++ E + R +++ +++ P AF E+V Sbjct: 55 VWR---AMSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++ I ++L E F+ E + KA L Y + D Sbjct: 112 HAKSYSSIFSTLCSTRQIDEAFSWSEENEYLQRKARIVLDYY-------------EGDSP 158 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 159 LKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRR 303 E + + +L+E E+ Y P G E+++++ N+ Sbjct: 217 GLERVSEDKRGELRDYTYDLLNELYDNEVEYTRSLYEPVGL----TQDVEKFLRYNGNKA 272 Query: 304 CHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +G LF NP + + + +FF + Y G ++ D Sbjct: 273 LMNLGYPALFPQEICDVNPSILAALSPNADENHDFFSGSGSSYVMGKSVETD 324 >gi|126174279|ref|YP_001050428.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella baltica OS155] gi|125997484|gb|ABN61559.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella baltica OS155] Length = 376 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 136/340 (40%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---GALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I + Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNKEILS 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + GT D ++ L + E + F Sbjct: 150 RATDIAAYYDHLIQLTQVFHLLGAGTHVIDGKEVIVNTRTLKKALYLCMMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHLN +++ ++ ++P + E Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILSIMQGGKDDPEMGEIAAEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ++ + +A E +A G +GLN QY++FI N+R + L + Sbjct: 270 QQEAFDLFFKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVNLPQPYLEI 329 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PWM ++ + E V+ Y Q + + D Sbjct: 330 TNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDSAVDSD 369 >gi|91793308|ref|YP_562959.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella denitrificans OS217] gi|91715310|gb|ABE55236.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella denitrificans OS217] Length = 376 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 124/314 (39%), Gaps = 24/314 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L + E+ + NL + +S+ Sbjct: 33 KYDIFEKLIEKQLSFFWRPEEVDVSRDKIDF---TALPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNDEILK 149 Query: 158 KANWALQYTQTLSSPSFTTGTK----------------DADQEFLQDLFVFYVVFEGMWF 201 +A +Y L + ++ L + E + F Sbjct: 150 RAGDIAKYYDDLIHLTQIFNLHGAGTHLIEGKQVTVNLRVLKKSLYLCMMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHLN ++ ++ ++P + E Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILALMQGGKDDPEMAEIAIEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ++ + ++A E +A G +GLN QY+++I N+R + L + Sbjct: 270 QQQAYDLFYKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVHLPQPYAEI 329 Query: 317 ENPFPWMSEVIDLK 330 NP PWM ++ Sbjct: 330 SNPLPWMKNWLESD 343 >gi|270265355|ref|ZP_06193616.1| ribonucleoside-diphosphate reductase 2 subunit beta [Serratia odorifera 4Rx13] gi|270040759|gb|EFA13862.1| ribonucleoside-diphosphate reductase 2 subunit beta [Serratia odorifera 4Rx13] Length = 323 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W +N W+P +VP+ +D+ W + LT E+ + R Sbjct: 14 NWNSIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWAT---LTPKEQQLTIRVFTGL 67 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ A+ P F EAVH+ ++ I ++L D + + Sbjct: 68 TLLDTIQNTVGAPALIADALTPHEEAVYSNIGFMEAVHARSYSSIFSTLCQTPDVDDAYR 127 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA+ L + ++ D L+ + V E FY+GF Sbjct: 128 WSEENHALQKKAHIILAHYRS-------------DDPLLKKV--ASVFLESFLFYSGFYL 172 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + ++ + + +L + Sbjct: 173 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDATRRQQVKNFAFDLLQD 232 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 E+ Y E VG + ++ + AN+ +G E LF NP + Sbjct: 233 LYDNEVRYTEELYDG--VGWT-EDVKTFLHYNANKALMNLGYEALFPPAMAEVNPAILSA 289 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 322 >gi|78486104|ref|YP_392029.1| ribonucleotide-diphosphate reductase subunit beta [Thiomicrospira crunogena XCL-2] gi|78364390|gb|ABB42355.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Thiomicrospira crunogena XCL-2] Length = 377 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 133/306 (43%), Gaps = 19/306 (6%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 39 KHPIFEKLIEKQLSFFWRPEEIDLSSDRGEYAN---LPEHEKHVFISNLKYQTLLDSVQG 95 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 96 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVSDPSLVFDDIVANEEIVK 155 Query: 158 KANWALQYTQTLSS-------PSFTTGTKDADQEFLQDLFVFYV----VFEGMWFYTGFA 206 +A Y L + T DA ++ ++ + V E + FY FA Sbjct: 156 RAISVTVYYDKLINLTNRMYAEEIDLETNDAFRKEIKTALFLTIVSVNVLEAIRFYVSFA 215 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWT--KEFQQKSR 262 S + M G A+ + I RDE+LHL+ +IN + ++P + KE ++K Sbjct: 216 CSFSFAERSLMEGNAKIIKLIARDEALHLSGTQHLINILSEGKDDPEMMEIAKENEEKVY 275 Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 + EA E +A G +GLNA + Y+++I N R I L P+F+ NP P Sbjct: 276 EIFREAAEQEKEWADYLFKDGSMIGLNASILKDYVEYITNTRIKAIKLNPIFENKSNPLP 335 Query: 322 WMSEVI 327 WM+ + Sbjct: 336 WMNNWL 341 >gi|225351964|ref|ZP_03742987.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157211|gb|EEG70550.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 330 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 65/352 (18%), Positives = 133/352 (37%), Gaps = 34/352 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI +R+ + D+ + + N+L K W+ N W+P +VP+ +DL Sbjct: 1 MAPISVPRQRIKLIDRV---SAINWNKLEDDKDLEVWD---RLTGNFWLPEKVPVSNDLP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 +W++ +++ E + R +++ +++ P AF E+V Sbjct: 55 VWRT---MSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++ I ++L E F+ E + KA L Y + D Sbjct: 112 HAKSYSSIFSTLCSTRQIDEAFSWSEENEYLQRKARIVLDYY-------------EGDSP 158 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 159 LKRKV--ASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRR 303 E + + +L+E E+ Y P G E+++++ N+ Sbjct: 217 GLELVSEDKRGELRDYTYDLLNELYDNEVEYTRSLYEPVGL----TQDVEKFLRYNGNKA 272 Query: 304 CHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +G LF NP + + + +FF + Y G ++ D Sbjct: 273 LMNLGYPALFPQEICDVNPSILAALSPNADENHDFFSGSGSSYVMGKSVETD 324 >gi|227876446|ref|ZP_03994558.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35243] gi|269976014|ref|ZP_06183018.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] gi|306817405|ref|ZP_07451150.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35239] gi|307700420|ref|ZP_07637459.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris FB024-16] gi|227842987|gb|EEJ53184.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35243] gi|269935842|gb|EEZ92372.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] gi|304649846|gb|EFM47126.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35239] gi|307614405|gb|EFN93635.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris FB024-16] Length = 322 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 117/321 (36%), Gaps = 26/321 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +D+ WK+ L DE+LM R Sbjct: 13 NWNDIEDEKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNADEKLMTNRVFTGLTLL 69 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ +++ P AF E+VH+ ++ I ++L E E F Sbjct: 70 DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFQWSE 129 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + KA+ L Y + V + E FY+GF + Sbjct: 130 NNEFLQKKAHIVLDYYH---------------GNDAEKRKVASTMLESFLFYSGFYAPMY 174 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + E+ +E + + ++L + Sbjct: 175 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKFQVAMRESSSSRQEELRDYTYSLLTDLYD 234 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E+ Y + ++++ + AN+ +G E LF E NP + Sbjct: 235 NEVLYTETLYDTLGL---TEDVKKFLHYNANKALMNLGYEALFPPEEIDVNPAILAALSP 291 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 ++ +FF + Y G Sbjct: 292 AAEENHDFFSGSGSSYTIGTA 312 >gi|91227184|ref|ZP_01261643.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 12G01] gi|262393879|ref|YP_003285733.1| ribonucleotide reductase of class Ia (aerobic) subunit beta [Vibrio sp. Ex25] gi|269967067|ref|ZP_06181135.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 40B] gi|91188712|gb|EAS75000.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 12G01] gi|262337473|gb|ACY51268.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio sp. Ex25] gi|269828326|gb|EEZ82592.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio alginolyticus 40B] Length = 377 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 75/342 (21%), Positives = 133/342 (38%), Gaps = 25/342 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +K + + L +V + K+ + + W P EV + D + Sbjct: 6 FNQKKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ E I +A Y L + + G + Sbjct: 123 YTHIIRNIVNDPAVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHVLNGET 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VKVSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 LN +IN ++ +E +Q + EA E +A G +GLN Sbjct: 243 LNGTQHMINLLRNGQDDFTFMQIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330 QY+++I N R +GL + T NP PW++ + Sbjct: 303 DILSQYVEYITNIRMQAVGLPAAYPEATTNPIPWINAWLSSD 344 >gi|238785708|ref|ZP_04629683.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia bercovieri ATCC 43970] gi|238713393|gb|EEQ05430.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia bercovieri ATCC 43970] Length = 376 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 125/311 (40%), Gaps = 24/311 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + N L D E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---NALPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPAIVFDDIVTNEEILK 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + G+ + ++ L + E + F Sbjct: 150 RAKDISAYYDDLIEMTSYYHLLGEGSHQVNGKTVVVNLRELKKQLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + +E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHILNLMRSGEDDPEMAEIAEEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 Q + + A E +A G +GLN QY+++I N R +GL F Sbjct: 270 QSQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKEILCQYVEYITNIRMQAVGLGVPFNTR 329 Query: 317 ENPFPWMSEVI 327 NP PW++ + Sbjct: 330 SNPIPWINSWL 340 >gi|24373963|ref|NP_718006.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella oneidensis MR-1] gi|24348405|gb|AAN55450.1|AE015682_5 ribonucleoside-diphosphate reductase, beta subunit [Shewanella oneidensis MR-1] Length = 376 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 136/340 (40%), Gaps = 28/340 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + N L D E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---NSLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVIFDDIVVNHEILR 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A ++ L + GT D ++ L + E + F Sbjct: 150 RATDIAEFYDHLIKLTQIYHLLGEGTHVIDGEPVEVNTRTLKKALYLCMMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHLN ++ ++ ++P + E Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHILTIMQGGKDDPEMGEIAIEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ++ + +A E +A G +GLN QY+++I N+R + L + Sbjct: 270 QQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEYITNQRMKSVNLPQPYAEQ 329 Query: 317 ENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 NP PWM ++ + E V+ Y Q A + D Sbjct: 330 TNPLPWMKNWLESDAVQVAPQEVEVSSYLVGQIDAAVDSD 369 >gi|28898709|ref|NP_798314.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio parahaemolyticus RIMD 2210633] gi|153839553|ref|ZP_01992220.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ3810] gi|260363692|ref|ZP_05776476.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus K5030] gi|260879741|ref|ZP_05892096.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AN-5034] gi|260898785|ref|ZP_05907226.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus Peru-466] gi|260901598|ref|ZP_05909993.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ4037] gi|28806927|dbj|BAC60198.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus RIMD 2210633] gi|149746934|gb|EDM57922.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ3810] gi|308086689|gb|EFO36384.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus Peru-466] gi|308093260|gb|EFO42955.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AN-5034] gi|308108691|gb|EFO46231.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus AQ4037] gi|308113401|gb|EFO50941.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio parahaemolyticus K5030] Length = 377 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 28/314 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L D E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I +A Sbjct: 92 PNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRA 151 Query: 160 NWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 Y L + D ++ L E + FY Sbjct: 152 KDIAHYYDDLIQTTNDYHRYGEGEHVLNGETVKVSLYDLKKKLYICLMSVNA-LEAIRFY 210 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQ 258 FA + M G A+ + I RDE+LHLN +IN ++ +E + Sbjct: 211 VSFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFSFMQIAEEAK 270 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316 Q + EA E +A G +GLN QY+++I N R +GL + T Sbjct: 271 QDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEAT 330 Query: 317 ENPFPWMSEVIDLK 330 NP PW++ + Sbjct: 331 TNPIPWINAWLSSD 344 >gi|291455662|ref|ZP_06595052.1| ribonucleoside-diphosphate reductase, beta subunit [Bifidobacterium breve DSM 20213] gi|291382590|gb|EFE90108.1| ribonucleoside-diphosphate reductase, beta subunit [Bifidobacterium breve DSM 20213] Length = 330 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 62/351 (17%), Positives = 128/351 (36%), Gaps = 32/351 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 ++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+ Sbjct: 1 MAPISIPRKPLKLIDRV---SAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 W+ +T+DE + +++ +++ P AF E+V Sbjct: 55 SWQ---KMTEDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++ I ++L E F+ + KA L Y + + Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYE---------------GD 156 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 V + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + + Q + +L+E E+ Y + + E+++++ N+ Sbjct: 217 GIAQLTDAERMDMQDYTYDLLNELYDNEVEYTQSLYDRVGL---TEDVEKFLRYNGNKAL 273 Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +G LF NP + + + +FF + Y G + D Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324 >gi|227504013|ref|ZP_03934062.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] gi|227199407|gb|EEI79455.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] Length = 329 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 66/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P +VP+ +DL WK+ LT+ E+ R Sbjct: 20 NWNTVPDDKDSEVWD---RLTGNFWLPEKVPVSNDLQSWKT---LTEHEQQTTMRVFAGL 73 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P AF E+VH+ ++ I +L + F Sbjct: 74 TLLDTIQGTVGAVSLLPDAKTPHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA + Y V + E FY+GF Sbjct: 134 WSEENENLQRKAKIVMSYY---------------KGADPLKKKVASTLLESFLFYSGFYL 178 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + E P +E + + +L+E Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQNGYNELPAEKQEEIKGYTFDLLYE 238 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI Y + + +G ++++++ AN+ + +G E LF E +P S Sbjct: 239 LYDNEIDYTEDLYDE--LGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G + WD Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDDDWD 328 >gi|238762669|ref|ZP_04623638.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia kristensenii ATCC 33638] gi|238698974|gb|EEP91722.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia kristensenii ATCC 33638] Length = 323 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 124/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W LT +E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWA---KLTAEEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L D E + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCSTPDVDEAYRWSE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E ++ KAN L++ + + L+ V E FY+GF + Sbjct: 131 ENIALQKKANIILEHYN--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 ++ A+ + I+RDE++H + + + +E + + +L + Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDISRRQEIKNFAYNLLQDLYD 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E+ Y + VG ++++ + AN+ +G E LF + NP + Sbjct: 236 NEVRYTADLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPADQANVNPAILAALSP 292 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322 >gi|123441277|ref|YP_001005264.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088238|emb|CAL11027.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 323 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 125/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W LT DE+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWA---KLTADEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D E + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + KA+ LQ+ + + L+ V E FY+GF + Sbjct: 131 ENGPLQKKADIILQHYN--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 ++ A+ + I+RDE++H + + + + +E + + +L + Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNNRRQEIKNFAFDLLQDLYD 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 EI Y VG ++++ + AN+ +G E LF ++ NP + Sbjct: 236 NEIHYTESLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSP 292 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322 >gi|332162772|ref|YP_004299349.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667002|gb|ADZ43646.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 323 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 125/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W LT DE+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWA---KLTADEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D E + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + KA+ LQ+ + + L+ V E FY+GF + Sbjct: 131 ENGPLQKKADIILQHYN--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 ++ A+ + I+RDE++H + + + + +E + + +L + Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKLDNNRRQEIKNFAFDLLQDLYD 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 EI Y VG ++++ + AN+ +G E LF ++ NP + Sbjct: 236 NEIHYTESLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSP 292 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322 >gi|325268103|ref|ZP_08134749.1| ribonucleotide-diphosphate reductase beta subunit [Kingella denitrificans ATCC 33394] gi|324980488|gb|EGC16154.1| ribonucleotide-diphosphate reductase beta subunit [Kingella denitrificans ATCC 33394] Length = 384 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 72/315 (22%), Positives = 126/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + W P EV + D + + L + E+ + NL + +S+ Sbjct: 40 KYIAFENLIEKQISFFWRPEEVDLSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + +S PE ++ AF E +HS ++ +II ++ D +F+ + I A Sbjct: 97 RSPNVGFLPLVSIPELETWIETWAFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYILA 156 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + GT + ++ L + V E + F Sbjct: 157 RAEDIACYYDDLIEYTQYFNLLGEGTHTVNGKIVEVSLHELKKKLYLCLMCVNVLEAIRF 216 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ E ++ Sbjct: 217 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRGGSEGTEWAQIAQDL 276 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315 QQ+ + +A E +A G +GLN QY+++I N R +GL F Sbjct: 277 QQECFDLFVKAAEQEKEWASYLFKDGSMIGLNKDILCQYVEYITNHRMLAVGLPVAFPKS 336 Query: 316 TENPFPWMSEVIDLK 330 T+NP PW++ + Sbjct: 337 TQNPIPWINAWLSSD 351 >gi|183598095|ref|ZP_02959588.1| hypothetical protein PROSTU_01459 [Providencia stuartii ATCC 25827] gi|188020253|gb|EDU58293.1| hypothetical protein PROSTU_01459 [Providencia stuartii ATCC 25827] Length = 323 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P ++P+ +D++ W + LT E+ + R Sbjct: 14 NWNRIEDDKDLEVWN---RLTTNFWLPEKIPLSNDISSWNT---LTAAEQQLTIRVFTGL 67 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ ++ P L +F EAVH+ ++ I ++L D + + Sbjct: 68 TLLDTIQNTVGAPSLMSDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTSDVDDAYR 127 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA + Y D L+ V E FY+GF Sbjct: 128 WSEENSALQNKAKIIMSYY--------------CDSHPLKKKV-ASVFLESFLFYSGFYL 172 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + ++ KE + + ++L + Sbjct: 173 PMYWSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLLKYDEKTQKEIKDFTFSLLFD 232 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E VG ++++ + AN+ +G E LF +P + Sbjct: 233 LYENEVNYTQELY--DTVGWT-EDVKKFLHYNANKALMNLGYEALFPDVVTDVSPAILSA 289 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 D + +FF + Y G + WD Sbjct: 290 LSPDANENHDFFSGSGSSYVIGKAVSTEDDDWD 322 >gi|22125124|ref|NP_668547.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] gi|45442235|ref|NP_993774.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|51597273|ref|YP_071464.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108808370|ref|YP_652286.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Antiqua] gi|108811297|ref|YP_647064.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Nepal516] gi|145598906|ref|YP_001162982.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Pestoides F] gi|149365457|ref|ZP_01887492.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis CA88-4125] gi|162420024|ref|YP_001607865.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Angola] gi|165925252|ref|ZP_02221084.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165939901|ref|ZP_02228439.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008124|ref|ZP_02229022.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166212554|ref|ZP_02238589.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167398943|ref|ZP_02304467.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421281|ref|ZP_02313034.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423716|ref|ZP_02315469.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468720|ref|ZP_02333424.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis FV-1] gi|170023362|ref|YP_001719867.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis YPIII] gi|186896377|ref|YP_001873489.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218929725|ref|YP_002347600.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis CO92] gi|229838202|ref|ZP_04458361.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895452|ref|ZP_04510624.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis Pestoides A] gi|229898686|ref|ZP_04513831.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis biovar Orientalis str. India 195] gi|229901543|ref|ZP_04516665.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis Nepal516] gi|270489729|ref|ZP_06206803.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis KIM D27] gi|294504447|ref|YP_003568509.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis Z176003] gi|21957983|gb|AAM84798.1|AE013726_1 ribonucleoside-diphosphate reductase 2, beta chain, frag [Yersinia pestis KIM 10] gi|45437099|gb|AAS62651.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis biovar Microtus str. 91001] gi|51590555|emb|CAH22196.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pseudotuberculosis IP 32953] gi|108774945|gb|ABG17464.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Yersinia pestis Nepal516] gi|108780283|gb|ABG14341.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Yersinia pestis Antiqua] gi|115348336|emb|CAL21269.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis CO92] gi|145210602|gb|ABP40009.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Yersinia pestis Pestoides F] gi|149291870|gb|EDM41944.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis CA88-4125] gi|162352839|gb|ABX86787.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis Angola] gi|165912120|gb|EDR30759.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922859|gb|EDR40010.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992506|gb|EDR44807.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166206485|gb|EDR50965.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166960770|gb|EDR56791.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051447|gb|EDR62855.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057886|gb|EDR67632.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749896|gb|ACA67414.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis YPIII] gi|186699403|gb|ACC90032.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+] gi|229681472|gb|EEO77566.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis Nepal516] gi|229688234|gb|EEO80305.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis biovar Orientalis str. India 195] gi|229694568|gb|EEO84615.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701607|gb|EEO89634.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Yersinia pestis Pestoides A] gi|262362562|gb|ACY59283.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis D106004] gi|262366433|gb|ACY62990.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis D182038] gi|270338233|gb|EFA49010.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis KIM D27] gi|294354906|gb|ADE65247.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis Z176003] gi|320016142|gb|ADV99713.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 323 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 59/330 (17%), Positives = 125/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + LT E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LTPHEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L L D + + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KA+ Q+ + + L+ V E FY+GF + Sbjct: 131 DNGPLQKKADIISQHYH--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L + Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLGKIDSAHRQEIKNFAFDLLQDLYD 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E+ Y + VG ++++ + AN+ +G E LF ++ +P + Sbjct: 236 NEVRYTEDLYDH--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322 >gi|159184148|ref|NP_353105.2| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium tumefaciens str. C58] gi|159139483|gb|AAK85890.2| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium tumefaciens str. C58] Length = 324 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 59/333 (17%), Positives = 121/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W + L +E+ + R Sbjct: 15 NWNRIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWGT---LKPEEQELTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + + + P L +F EAVH+ ++ I ++L D + + Sbjct: 69 TLLDTIQNGVGAVRLMPDSATPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDDAYR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ ++ + + L+ V E FY+GF Sbjct: 129 WSEENEFLQRKSAIIMREYDS--------------GDPLKKKI-ASVFLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 174 PMFWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALDRLGEAQRQEIKDFAFDLLLE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + +Q++ + AN+ +G E LF NP + Sbjct: 234 LYDNEAKYTEDLYDGVGL---TEDVKQFLHYNANKALMNLGYEALFPAEACRVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323 >gi|328474726|gb|EGF45531.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio parahaemolyticus 10329] Length = 377 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 28/314 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L D E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I +A Sbjct: 92 PNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRA 151 Query: 160 NWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 Y L + D ++ L E + FY Sbjct: 152 KDIAHYYDDLIQTTNDYHRYGEGEHVINGETVKISLYDLKKKLYICLMSVNA-LEAIRFY 210 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQ 258 FA + M G A+ + I RDE+LHLN +IN ++ +E + Sbjct: 211 VSFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFSFMQIAEEAK 270 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316 Q + EA E +A G +GLN QY+++I N R +GL + T Sbjct: 271 QDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPAAYPEAT 330 Query: 317 ENPFPWMSEVIDLK 330 NP PW++ + Sbjct: 331 TNPIPWINAWLSSD 344 >gi|268590425|ref|ZP_06124646.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rettgeri DSM 1131] gi|291314339|gb|EFE54792.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rettgeri DSM 1131] Length = 323 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 66/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W + LT E+ + R Sbjct: 14 NWNRIQDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWNT---LTAAEKQLTIRVFTGL 67 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + P L +F EAVH+ ++ I ++L D + + Sbjct: 68 TLLDTIQNTVGAPCLMPDAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDDAYR 127 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y D L+ + E FY+GF Sbjct: 128 WSEENNALQNKAKIILSYY--------------CDSHPLKKKI-ASIFLESFLFYSGFYL 172 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + KE + S ++L + Sbjct: 173 PMYWSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLAQYDENTQKEIKDFSFSLLFD 232 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMS 324 E+ Y E VG + ++++ + AN+ +G E LF T + Sbjct: 233 LYENEVKYTQELY--DTVGWS-EDVKKFLHYNANKALMNLGYEALFPDTVTDVSAAILSA 289 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 D + +FF + Y G + WD Sbjct: 290 LSPDANENHDFFSGSGSSYIIGKAVSTEDDDWD 322 >gi|114766102|ref|ZP_01445111.1| ribonucleoside-diphosphate reductase, beta subunit protein [Pelagibaca bermudensis HTCC2601] gi|114541657|gb|EAU44698.1| ribonucleoside-diphosphate reductase, beta subunit protein [Roseovarius sp. HTCC2601] Length = 326 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 122/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W N W+P +VP+ +D+ W + LT++ER + R Sbjct: 17 NWNRLQDEKDLEVWN---RLTVNFWLPEKVPLSNDVQSWAT---LTEEERQLTIRVFTGL 70 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + A+ P L AF EAVH+ ++ I ++L E F Sbjct: 71 TLLDTIQNSVGAPAMMPDCLTPHEESVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFR 130 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P + AKA L+ + P + V E FY+GF Sbjct: 131 WSDENPHLQAKARAVLETYAPEADP--------------LKRKIASVFLESFLFYSGFYL 176 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 177 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLELESPERRQELKDYAFGLLFE 236 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 +E Y E + + ++ + AN+ +G E LF NP + Sbjct: 237 LYDIEARYTEELYDGIGL---TEEVKAFLHYNANKALQNLGFEALFPPEAAEVNPAILAA 293 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 D + +FF + Y G + WD Sbjct: 294 LSPDSE-NHDFFSGSGSSYVIGRAVATEDDDWD 325 >gi|320538993|ref|ZP_08038668.1| putative ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Serratia symbiotica str. Tucson] gi|320030926|gb|EFW12930.1| putative ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Serratia symbiotica str. Tucson] Length = 376 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 140/347 (40%), Gaps = 37/347 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ VNV AR D K+ + + W P EV + Sbjct: 10 KNNPLLEPMFFGQS-VNV-------ARYDQQ-----KHEIFEKLIEKQLSFFWRPEEVDV 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++ L + E+ + NL + +S+ + +A+ +S PE ++ + Sbjct: 57 SCDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTT 176 F E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 114 FSETIHSRSYTHIIRNIVNDPALVFDDIVTNEEILKRAKDISGYYDDLIEMTSYYHLLGE 173 Query: 177 GTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 G + ++ L + E + FY FA + M G A+ + Sbjct: 174 GRHQVNGKTVTVNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIK 233 Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHL ++N ++ ++P + E QQ+ + A E +A Sbjct: 234 LIARDEALHLTGTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAQQEKEWAEYLFR 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLN QY+++I+N R +GLE FK NP PW++ + Sbjct: 294 DGSMIGLNKDILCQYVEYISNIRMQAVGLELPFKTRSNPIPWINAWL 340 >gi|148653376|ref|YP_001280469.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter sp. PRwf-1] gi|148572460|gb|ABQ94519.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Psychrobacter sp. PRwf-1] Length = 377 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 73/343 (21%), Positives = 132/343 (38%), Gaps = 25/343 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + K + + +V + K+ + + W P EV + D + Sbjct: 5 IFSQTKNDALKEPMFFGQPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDRIDY- 63 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L+ E+ + NL + +S+ + + + +S PE ++ +F E +HS Sbjct: 64 --GNLSTHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSR 121 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182 ++ +II ++ D +F+ E I +A+ Y L S F GT + Sbjct: 122 SYTHIIRNIVNDPAVVFDDIMENEHILQRASDIAYYYDDLYQHSQLYSLFGPGTHIVNGE 181 Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 ++ L + V E + FY FA + M G A+ + I RDE+L Sbjct: 182 EKYVDLRKLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEAL 241 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAHETMPKG-FVGLN 288 HL +IN + E + + +A E +A G +GLN Sbjct: 242 HLTSTQHMINIMASGKDDPEMAEISAQCHNESIEIFRKAAEQEKEWAGYLFKDGSMIGLN 301 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK 330 QY+++I N R +GL +F ++ NP PW++ + Sbjct: 302 KDILCQYVEYITNLRMEAVGLPGIFPESKSNPIPWINTWLSSD 344 >gi|269217712|ref|ZP_06161566.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212647|gb|EEZ78987.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 325 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 121/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P ++P+ +D+ W + L E+ M R Sbjct: 16 NWNRIEDEKDLEVWD---RLTGNFWLPEKIPLSNDIPSWST---LKPHEQQMTTRVFTGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P L AF E+VH+ ++ I ++L E E F Sbjct: 70 TLLDTVQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSSIFSTLISTEEIDETFR 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L Y + E + V + E FY+GF Sbjct: 130 WSEENEYLQKKAKIILDYYR---------------GEDAEKRKVASTMLESFLFYSGFYA 174 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + E Q+ + +++ + Sbjct: 175 PMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQKALAKASQERRDELQEYAYSLVMD 234 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + +++ AN+ + +G E LF + NP + Sbjct: 235 LYDNEELYTESLYDE---MGLTEDVKMFLRHNANKALNNLGYEALFGPDQTAVNPSILAA 291 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 292 LSPNADENHDFFSGSGSSYVIGTAEATTDDDWD 324 >gi|209695249|ref|YP_002263178.1| ribonucleotide-diphosphate reductase subunit beta [Aliivibrio salmonicida LFI1238] gi|208009201|emb|CAQ79455.1| ribonucleoside-diphosphate reductase 1 beta chain [Aliivibrio salmonicida LFI1238] Length = 377 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 133/342 (38%), Gaps = 25/342 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 EK + + L +V + K+ + + W P EV + D + Sbjct: 6 FRQEKNDQLKEPMFLGNSVNVARYDQQKFQVFEKLIEKQLSFFWRPEEVDVSGDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NNLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +I+ ++ D +F+ E I +A Y L + F GT + Sbjct: 123 YTHIVRNIVNDPAIIFDDIVENEEILKRAKDIAHYYDNLIQATNDYHRFGEGTHTVNGEE 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 IIVSKRELKKTLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ E +Q + A E +A+ G +GLN Sbjct: 243 LTSTQHMVNLLRTGQDDPEFVEIAAECEQDCFDLFKAAAEQEKEWANYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330 QY+++I N R +GL + T+NP PW++ + Sbjct: 303 DILCQYVEYITNLRMKAVGLSGAYDGATQNPIPWINSWLSSD 344 >gi|92112513|ref|YP_572441.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter salexigens DSM 3043] gi|91795603|gb|ABE57742.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Chromohalobacter salexigens DSM 3043] Length = 326 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 117/322 (36%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W N W+P +VP+ +D++ W N LT+ E+ + R Sbjct: 17 NWNRLQDEKDLEVWN---RLTANFWLPEKVPLSNDVSAW---NTLTEQEQTLTIRVFTGL 70 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + P +F E+VH+ ++ I ++L D + + Sbjct: 71 TLLDTIQGTIGAPTLIEDAVTPHEEAVFTNISFMESVHARSYSSIFSTLCATRDVDDAYR 130 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P + KA L + D ++ + V E FY+GF Sbjct: 131 WSEENPHLQNKAELILNRYR-------------MDDPLMRKV--ASVFLESFLFYSGFYL 175 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q +E + + +L E Sbjct: 176 PMYWASRGKLTNTADLIRLIIRDEAVHGYYIGYKFQQALARESAERQQEIKDATFDLLLE 235 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + + ++ + AN+ +G EPLF NP + Sbjct: 236 LYDNEVHYTESLYDDVGL---TEEVKAFLHYNANKALMNLGYEPLFPGATEAVNPAILAA 292 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 ++ +FF + Y G Sbjct: 293 LSPGAEENHDFFSGSGSSYVIG 314 >gi|237808189|ref|YP_002892629.1| ribonucleotide-diphosphate reductase subunit beta [Tolumonas auensis DSM 9187] gi|237500450|gb|ACQ93043.1| ribonucleotide reductase [Tolumonas auensis DSM 9187] Length = 377 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 123/315 (39%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + W P EV + D +++ L E+ + NL + +S+ Sbjct: 33 KYEVFERLIEKQLSFFWRPEEVDVSQDRIDYQT---LPPHEQHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I Sbjct: 90 RSPNVALLPLVSLPELETWIETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVVNEQIIK 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + GT + ++ L + E + F Sbjct: 150 RAEDIAGYYDELIELTQYWQLLGEGTHQVNGKTVVVSRRELKKKLYLCLMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ N +E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHMLNILREGNDDPEMAEIAREL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + + +A E +A G +GLN QY++FI N R +GL F Sbjct: 270 HDECFALFKKAAEQEKEWASYLFKDGSMLGLNKDILCQYVEFITNVRMQGVGLPLAFDAD 329 Query: 317 -ENPFPWMSEVIDLK 330 +NP PW++ ++ Sbjct: 330 RQNPLPWINTWLNSD 344 >gi|318606878|emb|CBY28376.1| ribonucleotide reductase of class Ib (aerobic),beta subunit [Yersinia enterocolitica subsp. palearctica Y11] Length = 323 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 125/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W LT DE+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWA---KLTADEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D E + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + KA+ LQ+ + + L+ V E FY+GF + Sbjct: 131 ENGPLQKKADIILQHYN--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 ++ A+ + I+RDE++H + + + + +E + + +L + Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKLDNNRRQEIKNFTFDLLQDLYD 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 EI Y VG ++++ + AN+ +G E LF ++ NP + Sbjct: 236 NEIHYTESLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSP 292 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322 >gi|149197800|ref|ZP_01874849.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera araneosa HTCC2155] gi|149139021|gb|EDM27425.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera araneosa HTCC2155] Length = 376 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 76/342 (22%), Positives = 133/342 (38%), Gaps = 24/342 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + + + +V++ K+ + + W P EV + D A +K Sbjct: 5 IFSQVPNDPLKEPMFFGNNVNVSRYDQQKHPVFEQLIEKQLSFFWRPEEVDLSRDRADFK 64 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L E+ + NL + +S+ + +A +S PE ++ AF E +HS Sbjct: 65 ---KLPAHEKHIFLSNLKYQTLLDSVQGRSPNVAFLPVISIPELETWVETWAFSETIHSR 121 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182 ++ +II ++ D E+F+ SI +A+ Y + GT + Sbjct: 122 SYTHIIRNIVNDPSEIFDDIVNNESIIQRASSVSHYYDSFIELQCYYNLLGEGTHMINDV 181 Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 + L V V E + FY FA + M G A+ + I RDE+L Sbjct: 182 PVVVNMRELKRRLFLTVVSVNVLEAIRFYVSFACSFAFAERAVMEGNAKIIKLIARDEAL 241 Query: 234 HLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL +I + ++P + E + + + A E +A G +GLN Sbjct: 242 HLTGTQQMIQIFREGKDDPEMAEIAAECEGQVYQIFSSAAEQEKEWAKFLFRDGSMIGLN 301 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 A Y+++I N R G + +F T+NP PWM+ + Sbjct: 302 ADILGDYVEYITNVRLKASGYKNVFPTTQNPLPWMNSWLSSD 343 >gi|59711808|ref|YP_204584.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio fischeri ES114] gi|197336251|ref|YP_002156001.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio fischeri MJ11] gi|59479909|gb|AAW85696.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein [Vibrio fischeri ES114] gi|197317741|gb|ACH67188.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio fischeri MJ11] Length = 377 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 74/342 (21%), Positives = 135/342 (39%), Gaps = 25/342 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 EK + + L +V + K+ + + W P EV + D + Sbjct: 6 FRQEKNDQLKEPMFLGNSVNVARYDQQKFQIFEKLIEKQLSFFWRPEEVDVSGDRIDY-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NNLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ + +F+ E I +A Y L + F GT + Sbjct: 123 YTHIIRNIVNNPSVIFDDIVENEEILKRAKDIAHYYDNLIQATNDYHRFGEGTHVLNGQE 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDESLH Sbjct: 183 ITISKRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDESLH 242 Query: 235 LNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N ++ E +Q+ + A E +A+ G +GLN Sbjct: 243 LTSTQHMLNLLRTGQDDPEFVEIAAECEQECFDLFKAAAEQEKQWANYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330 QY+++I N R +GL ++ T+NP PW++ + Sbjct: 303 DILCQYVEYITNLRMKAVGLNSAYEGATQNPIPWINSWLSSD 344 >gi|184201049|ref|YP_001855256.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria rhizophila DC2201] gi|183581279|dbj|BAG29750.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria rhizophila DC2201] Length = 326 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 66/345 (19%), Positives = 131/345 (37%), Gaps = 34/345 (9%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 V+ R + N++ K W+ +N W+P +VP+ +D+ WK+ LT + Sbjct: 5 QVELLRHPAEAINWNRVQDEKDTEVWD---RLTSNFWLPEKVPLSNDVQSWKT---LTAE 58 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ + + +++ +++ AF E+VH+ ++ I ++ Sbjct: 59 EQDLTMKVFTGLTLLDTIQGTVGAVSLIPDAKTLHEEAVYTNIAFMESVHAKSYSSIFST 118 Query: 138 L--GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 L E F +E + KA+ L+Y + V + Sbjct: 119 LSSMKQIDEAFRWSKENEHLQRKADIVLRYY---------------KGDDPLKKKVASTL 163 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 E FY+GF + K+ A+ + I+RDE++H + + ++ + Sbjct: 164 LESFLFYSGFYLPMYFSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLLQESPQRQQ 223 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK- 314 E + + +L E E+AYA VG ++++ + AN+ + +G E LF Sbjct: 224 ELKDYTYDLLDELYENEVAYAEALY--DSVGWT-EDVKKFLHYNANKALNNLGYEALFPR 280 Query: 315 --YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 +P S + + +FF + Y G + WD Sbjct: 281 EMTDVSPAILSSLSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 325 >gi|254471227|ref|ZP_05084629.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio sp. JE062] gi|211959373|gb|EEA94571.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio sp. JE062] Length = 325 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 68/333 (20%), Positives = 122/333 (36%), Gaps = 33/333 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W +N W+P +VP+ +D+ W S LT +E+ + R Sbjct: 15 NWNRLQDDKDLEIWN---RLTSNFWLPEKVPLSNDVQSWAS---LTPEEQQLTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ A+ P L AF EAVH+ ++ + ++L + + F Sbjct: 69 TLLDTIQNTVGAPALMADAVTPHEEAVLTNIAFMEAVHARSYSSVFSTLCRTAEVDDAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + AK+ L+ SSP + V E FY+GF Sbjct: 129 WSEENEFLQAKSRLILEEYNATSSP--------------LKKKIASVFLESFLFYSGFYL 174 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E + + T+L + Sbjct: 175 PMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLERLSEAERTEIKDFAFTLLFD 234 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE Y + + + ++ + N+ +G E LF T NP S Sbjct: 235 LYDLETKYTEDLYDPLGL---TEDVKHFLHYNGNKALQNLGFEGLFPETICQVNPAIMAS 291 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 324 >gi|157961884|ref|YP_001501918.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella pealeana ATCC 700345] gi|157846884|gb|ABV87383.1| Ribonucleoside-diphosphate reductase [Shewanella pealeana ATCC 700345] Length = 376 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 86/363 (23%), Positives = 141/363 (38%), Gaps = 38/363 (10%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NN L P+ G+ VNV AR D KY + + W P EV + Sbjct: 11 NNAMLEPMFLGQS-VNV-------ARYDQQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D + L + E+ + NL + +S+ + +A +S PE ++ +F Sbjct: 58 RDKIDYA---ALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL------------- 169 E +HS ++ +II ++ D +FN E I +A+ Y L Sbjct: 115 SETIHSRSYTHIIRNIVNDPSIVFNDIVENEEILKRASDIANYYDHLIKLSQAYHLLGEG 174 Query: 170 ---SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 TK ++ L V V E + FY FA + M G A+ + Sbjct: 175 SHEIDGEIIEVTKREIKKALYLCMVSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIRL 234 Query: 227 IMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I RDE+LHLN ++ + ++P + KE +Q + + +A E +A Sbjct: 235 IARDEALHLNSTQHILKIMHAGKDDPEMAEIAKECEQTAIDIFIKAAEQEKEWAKYLFKD 294 Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRV 340 G +GLN QY+++I N R + + NP PWM ++ + E V Sbjct: 295 GSMIGLNETILCQYVEYITNERMKAVNFASPYAEQTNPLPWMKNWLESDSVQVAPQEVEV 354 Query: 341 TEY 343 + Y Sbjct: 355 SSY 357 >gi|229916488|ref|YP_002885134.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium sp. AT1b] gi|229467917|gb|ACQ69689.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sp. AT1b] Length = 346 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 82/330 (24%), Positives = 144/330 (43%), Gaps = 20/330 (6%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y +N W+P E+ M D+ W LT+ E+ KR Sbjct: 23 GETSSIVNWNDIAYPQFYTIYKQLLSNFWIPDEISMSKDMQQW---PQLTEREQDAFKRI 79 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G + +S V +L S+ L A +E VH+ ++ Y+++SL ++ Sbjct: 80 IGLLSILDS-VQTRYILESSMFSSDSSVHAVLAVIAQQEVVHNQSYSYVLSSLVPLAEQN 138 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +FN+ ++ + + + L + + + E V V+ EG+ FY+ Sbjct: 139 RIFNIAKDDEMVMKRNQFILDLYEAFR--------ETPNAENFAKSLVASVILEGINFYS 190 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL-WTKEFQQKSR 262 GFA +L R KMVG + YI RDE H F ++ + ENP + +F Q Sbjct: 191 GFAYFYNLARHQKMVGTSTMISYIQRDEMQHSYFISQLLRAVLTENPKIDENGQFSQFVY 250 Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFP 321 + EA LEI + + + GL+ Y++++AN+R IGL L++ E+ P Sbjct: 251 DTMAEAVDLEIEWCEYVL-RDLDGLDVSEMRDYVKYLANKRLRVIGLNDLYEGFDEDVMP 309 Query: 322 WMSEVID---LKKEKNFFETRVTEYQQGAE 348 W+ D + +FFE + Y + + Sbjct: 310 WIRAYSDDSLNATKSDFFEQKSRSYAKVTD 339 >gi|319408170|emb|CBI81823.1| ribonucleoside-diphosphate reductase beta chain [Bartonella schoenbuchensis R1] Length = 324 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 63/343 (18%), Positives = 124/343 (36%), Gaps = 31/343 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + K + + N+L K W N W+P +VP+ +D+ W S LT+ Sbjct: 2 TRISTKNPVICAVNWNKLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTE 55 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +ER + R +++ +++ L AF EAVH+ ++ I + Sbjct: 56 EERKLTIRVFTGLTLLDTVQNTVGAISLMADAITEHEEAVLTNIAFMEAVHARSYSSIFS 115 Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 +L + + F E ++ KA L+ + + L+ Sbjct: 116 TLCSTAEVDDAFRWSEENANLQKKATLVLERYEA--------------SDPLKKKI-AST 160 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 161 LLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYVGYKFQLGFAKLDEAKK 220 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 +E + + ML + +E Y + + + ++ + AN+ +G EPLF Sbjct: 221 QEIKDFAFNMLFDLYSIECKYTEDLYDAIGL---TEDVKVFIHYNANKALMNLGFEPLFP 277 Query: 315 Y---TENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352 NP + + + +FF + Y + D Sbjct: 278 PEVCRVNPAILAALSPNSDENHDFFSGSGSSYVIGKAVATTDD 320 >gi|328543067|ref|YP_004303176.1| ribonucleoside-diphosphate reductase, beta subunit [polymorphum gilvum SL003B-26A1] gi|326412813|gb|ADZ69876.1| Ribonucleoside-diphosphate reductase, beta subunit [Polymorphum gilvum SL003B-26A1] Length = 325 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 63/334 (18%), Positives = 119/334 (35%), Gaps = 30/334 (8%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 D L+ E + N W+P +VP+ +D+ W + LT E+ + R Sbjct: 11 PDAVNWNRLRDPKDLEIWNRLTVNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTG 67 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELF 146 +++ A+ P L AF EAVH+ ++ + ++L + + F Sbjct: 68 LTLLDTIQNMIGAPALMADAITPHEEAVLTNIAFMEAVHARSYSSVFSTLCRTAEVDDAF 127 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 E P + AK+ L DA L+ V E FY+GF Sbjct: 128 RWSAENPQLQAKSRLILNEY-------------DASGTPLKKKI-ASVFLESFLFYSGFY 173 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 + K+ A+ + I+RDE++H + + +E + + +++ Sbjct: 174 LPMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLETVSEAERQEIKDFAFSLMF 233 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWM 323 + +E Y + + ++ + AN+ +G E LF NP Sbjct: 234 DLYAIEAKYTESLCDGVGL---TEDVKHFLHYNANKALMNLGYEALFPDAVCAVNPAIMA 290 Query: 324 SEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + + +FF + Y G + WD Sbjct: 291 ALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 324 >gi|253689503|ref|YP_003018693.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756081|gb|ACT14157.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 320 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 124/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + L ER + R Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWST---LNARERQLTIRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ + P L +F EAVH+ ++ I ++L L + + + Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P++ K++ L + ++ + L V E FY+GF + Sbjct: 128 ENPALQKKSDIILSHYRS--------------DDPLMKKV-ASVFLESFLFYSGFYLPMY 172 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + ++ + + +L + Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKADPARQQQVKNFAYDLLQDLYD 232 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327 E+ Y E VG ++++ + AN+ +G E LF + NP + Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319 >gi|238759171|ref|ZP_04620339.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae ATCC 35236] gi|238702587|gb|EEP95136.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae ATCC 35236] Length = 323 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 128/330 (38%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P ++P+ +D+ W + LT +E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTSNFWLPEKIPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D + + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + KA+ LQ+ + + L+ V E FY+GF + Sbjct: 131 ENGPLQKKADIILQHYH--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + + E + + +L + Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNARRLEIKNFAFDLLQDLYD 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E+ Y + K VG ++++ + AN+ +G E LF ++ +P + Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPISQAAVSPAILAALSP 292 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322 >gi|99080359|ref|YP_612513.1| ribonucleotide-diphosphate reductase subunit beta [Ruegeria sp. TM1040] gi|99036639|gb|ABF63251.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Ruegeria sp. TM1040] Length = 338 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 66/345 (19%), Positives = 124/345 (35%), Gaps = 33/345 (9%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ R + + N+L K W N W+P +VP+ +D+ W + LT D Sbjct: 16 DMTQARAVPKAINWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSW---SQLTPD 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ + R +++ + + P L +F EAVH+ ++ + ++ Sbjct: 70 EQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITPHEEAVLSNISFMEAVHARSYSSVFST 129 Query: 138 LG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 L + E F E + AK+ L G DA L+ V Sbjct: 130 LCQTTEVDEAFRWSAENEHLQAKSRLIL-------------GEYDATASPLRKKI-ASVF 175 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 E FY+GF + ++ A+ + I+RDE++H + + K Sbjct: 176 LESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRDEAIHGYYIGYKFQRGLERASEAERK 235 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 E + + +L + +E Y + + + ++ + AN+ +G E LF Sbjct: 236 ELKDFAFGLLFDLYDIEARYTEQLYDGLGL---TEDVKNFLHYNANKALQNLGFEALFPE 292 Query: 316 TE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 NP + + +FF + Y G + WD Sbjct: 293 ETCRVNPAIMAALSPGSDENHDFFSGSGSSYVIGKAVATEDDDWD 337 >gi|261342124|ref|ZP_05969982.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter cancerogenus ATCC 35316] gi|288315455|gb|EFC54393.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter cancerogenus ATCC 35316] Length = 319 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 121/330 (36%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ I ++L D ++ Sbjct: 67 DTIQNTVGAPALMSDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDTAYDWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E S+ KAN L+Y Q + L+ V E FY+GF + Sbjct: 127 ECESLQRKANLVLEYYQA--------------DDPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + +E + + +L + Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSEARREELKGFALDLLMDLYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 E++Y + ++ + AN+ +G E LF NP + Sbjct: 232 NELSYTEALYAGSGWE---DEVKAFLCYNANKALMNLGYEALFPPDMADVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 289 NADENHDFFSGSGSSYVMGKAVETEDEDWD 318 >gi|190896516|gb|ACE96771.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|269963956|ref|ZP_06178265.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi 1DA3] gi|269831299|gb|EEZ85449.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi 1DA3] Length = 377 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 73/314 (23%), Positives = 123/314 (39%), Gaps = 28/314 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L D E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NKLPDHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I +A Sbjct: 92 PNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEHILKRA 151 Query: 160 NWALQYTQTLS-----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 Y L + D ++ L E + FY Sbjct: 152 KDIAHYYDDLIQATNDYHRYGEGEHVLNGETVKVSLYDLKKKLYVCLMSVNA-LEAIRFY 210 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WTKEFQ 258 FA + M G A+ + I RDE+LHLN +IN ++ +E + Sbjct: 211 VSFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLRNGQDDFTFMQIAEEAK 270 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YT 316 Q + EA E +A G +GLN QY+++I N R +GL + T Sbjct: 271 QDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIRMQAVGLPMAYPEAT 330 Query: 317 ENPFPWMSEVIDLK 330 NP PW++ + Sbjct: 331 SNPIPWINAWLSSD 344 >gi|308177564|ref|YP_003916970.1| ribonucleoside-diphosphate reductase subunit beta [Arthrobacter arilaitensis Re117] gi|307745027|emb|CBT75999.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter arilaitensis Re117] Length = 324 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W NN W+P +VP+ +D+ W + LT+DE+L+ R Sbjct: 15 NWNRIQDDKDVEVWN---RLVNNFWLPEKVPLSNDIQSWGT---LTEDEKLLTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L +++ P AF E+VH+ ++ I ++L + E F Sbjct: 69 TLLDTLQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDEAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA Y E + + E FY+GF Sbjct: 129 WSTENVNLQKKAQIIESYYH---------------GEDPLKRKIASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +++E Sbjct: 174 PMHWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLENETEERKQELKDYTFELMYE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 E+ Y H+ + ++++ + AN+ +G E +F T +P + Sbjct: 234 LYENEVQYTHDLYDPVGLS---EDVKKFLHYNANKALMNLGYEAMFPSTVTDVSPAILAA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323 >gi|296104353|ref|YP_003614499.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058812|gb|ADF63550.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 319 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 124/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNHIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ I ++L D ++ Sbjct: 67 DTIQNTVGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E S+ KAN L Y Q E L+ V E FY+GF + Sbjct: 127 ESESLQRKANLVLDYYQA--------------DEPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + + +E + + +L + Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKVSDVRREELKGFALDLLMDLYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 E++Y E G + ++ + AN+ +G E LF NP + Sbjct: 232 NELSYTEELYAG--TGW-EEEVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 289 NADENHDFFSGSGSSYVMGKAVETEDEDWD 318 >gi|326783148|ref|YP_004323545.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2] gi|310005566|gb|ADO99954.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2] Length = 394 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 85/359 (23%), Positives = 145/359 (40%), Gaps = 28/359 (7%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + V+ + M + + + KY + W P EV +Q D + +K+ Sbjct: 24 KNHVDTKKQPMFFGQPLGMQRYDEFKYPVFDKLTTQQLGYFWRPEEVSLQKDRSDYKT-- 81 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT +++ + NL + +S+ +A + S PE + E +HS ++ Sbjct: 82 -LTPEQKHIYTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNVWQLMEMIHSRSYT 140 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT---------------G 177 YII ++ D E+F+ + P I ++A + L + G Sbjct: 141 YIIKNVYPDASEVFDTVLDDPKIMSRAESVTKAYDDLINSEHEFDSGNAWKFAAEGHPAG 200 Query: 178 TKDAD--QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 T D + L + + EG+ FY FA + G M G A+ I RDES HL Sbjct: 201 TYDRKELKRKLYRAVLNVNILEGIRFYVSFACSFAFGELKVMEGSAKIISLIARDESQHL 260 Query: 236 NFGIDVINQIKIENPHLWTKEFQQK---SRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291 +I + + + + +++ M A E A+A G +GLN Sbjct: 261 VLTQQIIKKWQDGDDEEMVRIAEEEKPNVLKMFQNAVEEEKAWAQYLFKNGSMIGLNEKL 320 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347 QY++F ANRR IGL+P++ + NP PW ++ K ++N ET + Y G Sbjct: 321 LGQYVEFTANRRMKAIGLDPIYDISPRNNPLPWTQYWLNSKGQQNAPQETEIESYVIGG 379 >gi|238790129|ref|ZP_04633906.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia frederiksenii ATCC 33641] gi|238721798|gb|EEQ13461.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia frederiksenii ATCC 33641] Length = 323 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 57/323 (17%), Positives = 123/323 (38%), Gaps = 26/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W + L +E+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LAPNEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + P +F EAVH+ ++ I ++L + D + + Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + KA+ LQ+ + + L+ V E FY+GF + Sbjct: 131 ENGPLQKKADIILQHYH--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMY 175 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L + Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLERVDNNRRQEIKNFAFDLLQDLYD 235 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E+ Y + VG ++++ + AN+ +G E LF ++ +P + Sbjct: 236 NEVRYTEDLYDD--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G + Sbjct: 293 NADENHDFFSGSGSSYVIGKAVS 315 >gi|257454213|ref|ZP_05619483.1| ribonucleoside-diphosphate reductase, beta subunit [Enhydrobacter aerosaccus SK60] gi|257448386|gb|EEV23359.1| ribonucleoside-diphosphate reductase, beta subunit [Enhydrobacter aerosaccus SK60] Length = 377 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 82/341 (24%), Positives = 146/341 (42%), Gaps = 29/341 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P E+ + D + + L+ E+ + NL + +S+ Sbjct: 33 KFPVFEQLIEKQLSFFWRPEEIDVSKDRLDF---SNLSVHEQHIFLSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + +S PE ++ +F E +HS ++ +II ++ D ++F+ + P I Sbjct: 90 RSPNAVLLPLVSIPELETWIETWSFSETIHSRSYTHIIRNVVNDPSKVFDDIVDNPFILE 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A ++ L S + G D + L V V E + F Sbjct: 150 RATGIAKFYDELYQLSQLYNLYGEGRHVIDGKPVEVNLRLLKTKLYLCLVAINVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHLWT--KEF 257 Y FA + M G A+ + I RDE+LHLN +IN ++ ++P + ++ Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIKMIARDEALHLNGTQHMINLMQWGKDDPDMVEIAQDC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ++ + +A E A+A G +GLN QY+++I N R IGL P+F Sbjct: 270 QQQAIEIFKDAAEQEKAWAKYLFKNGSMIGLNENILVQYVEYITNLRMDAIGLPPIFAAI 329 Query: 317 E-NPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 + NP PW++ + + E+ +T Y Q AEL D Sbjct: 330 KNNPIPWINAWLSSDNVQVAPQESEITSYLVGQIDAELSDD 370 >gi|47566242|ref|ZP_00237270.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9241] gi|47556795|gb|EAL15126.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9241] Length = 322 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKQEQVAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|319779630|ref|YP_004130543.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Taylorella equigenitalis MCE9] gi|317109654|gb|ADU92400.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Taylorella equigenitalis MCE9] Length = 377 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 72/315 (22%), Positives = 129/315 (40%), Gaps = 25/315 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + GL D E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEIDVSQDRIDYA---GLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ +D +F+ I Sbjct: 90 RSPNVAFLPLVSIPELETWIETWSFSETIHSRSYTHIIRNISVDPSSIFDDIVRNKHILE 149 Query: 158 KANWALQYTQTLSS-----PSFTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A +Y L F G + + ++ L + V E + F Sbjct: 150 RAQDISKYYDELIELTQFYEMFGEGVHNVNGREIKVSIYELKKRLYLCLMAVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N + ++P + E Sbjct: 210 YVSFACSFAFAERKLMEGNAKIIKLIARDEALHLTSTQHMLNIMSSGADDPEMAHIASEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + + + A E A+A G +GLN QY+++I N R +GLE F + Sbjct: 270 KNQCFELFKSAAEQEKAWAEYLFKDGSMIGLNKEILIQYVEYITNIRMSAVGLEEAFPQS 329 Query: 317 E-NPFPWMSEVIDLK 330 + NP PW++ + Sbjct: 330 KQNPIPWINTWLTSD 344 >gi|190896508|gb|ACE96767.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896514|gb|ACE96770.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896522|gb|ACE96774.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896540|gb|ACE96783.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896542|gb|ACE96784.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|49473850|ref|YP_031892.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella quintana str. Toulouse] gi|49239353|emb|CAF25686.1| Ribonucleotide reductase beta-chain [Bartonella quintana str. Toulouse] Length = 324 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 63/343 (18%), Positives = 122/343 (35%), Gaps = 31/343 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + K + + N+L K W N W+P +VP+ +D+ W S LT+ Sbjct: 2 TKITTKNPVVCAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTE 55 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +ER + R +++ +++ L AF EAVH+ ++ I + Sbjct: 56 EERKLTVRVFTGLTLLDTIQNTVGAISLMADAITEHEEAVLTNIAFMEAVHARSYSSIFS 115 Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 +L + + F E + KA L+ + + L+ Sbjct: 116 TLCSTVEVDDAFRWSEENIHLQKKARLVLERYEA--------------SDPLKKKI-AST 160 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 161 LLESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLNESKK 220 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 +E + S +L + +E Y + + + ++ + AN+ +G EPLF Sbjct: 221 QEIKDFSFNLLFDLYNIECKYTEDLYDALGL---TEDVKVFLHYNANKALMNLGFEPLFP 277 Query: 315 Y---TENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352 NP + + +FF + Y + D Sbjct: 278 PEVCRVNPAILAALSPSSDENHDFFSGAGSSYVIGKAVATTDD 320 >gi|52143985|ref|YP_082843.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus E33L] gi|228984529|ref|ZP_04144706.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229155020|ref|ZP_04283134.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 4342] gi|51977454|gb|AAU19004.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus E33L] gi|157955324|gb|ABW06037.1| NrdF [Bacillus thuringiensis serovar tochigiensis] gi|228628578|gb|EEK85291.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 4342] gi|228775232|gb|EEM23621.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 322 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 73/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|297570727|ref|YP_003696501.1| ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum DSM 20595] gi|296931074|gb|ADH91882.1| Ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum DSM 20595] Length = 324 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 121/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+++ K W+ N W+P ++P+ +D+ W + L E+LM R Sbjct: 15 NWNKIIDEKDQEVWD---RLTGNFWLPEKIPLSNDIQSWNT---LKPHEQLMTTRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ +++ P L AF E+VH+ ++ I ++L + E F Sbjct: 69 TLLDTVQGTVGAISLIPDAITPHEEAVLTNIAFMESVHAKSYSSIFSTLISSQEIEETFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P + KA L Y + + + V + E FY+GF Sbjct: 129 WSEENPYLQKKAQIVLDYYR---------------GDDPEKRKVASTMLESFLFYSGFYA 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q E + ++L + Sbjct: 174 PMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQQAVKRASAERQAELMDYTYSLLED 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + ++++ AN+ +G E LF + NP + Sbjct: 234 LYENEEGYTESLYDE---MGLTEDVKMFLRYNANKALMNLGYEALFPADQTAVNPAILAA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGTAEATEDEDWD 323 >gi|50122260|ref|YP_051427.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium atrosepticum SCRI1043] gi|49612786|emb|CAG76236.1| ribonucleoside-diphosphate reductase 2 beta chain [Pectobacterium atrosepticum SCRI1043] Length = 320 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 124/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + L ER + R Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWST---LNTRERQLTIRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ + P L +F EAVH+ ++ I ++L L + + + Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P++ K++ L + ++ + L V E FY+GF + Sbjct: 128 ENPALQKKSDIILSHYRS--------------DDPLMKKV-ASVFLESFLFYSGFYLPMY 172 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + ++ + + +L + Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALAKADPARQQQVKNFAYDLLQDLYD 232 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327 E+ Y E VG ++++ + AN+ +G E LF + NP + Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319 >gi|319404590|emb|CBI78196.1| ribonucleoside-diphosphate reductase beta chain [Bartonella rochalimae ATCC BAA-1498] gi|319407580|emb|CBI81230.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp. 1-1C] Length = 324 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 62/338 (18%), Positives = 122/338 (36%), Gaps = 29/338 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + K + + N+L K W N W+P +VP+ +D+ W S LT+ Sbjct: 2 TKITTKNPVVCAVNWNRLYDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTE 55 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +ER + R +++ +++ L AF EAVH+ ++ I + Sbjct: 56 EERKLTIRVFTGLTLLDTVQNTVGAISLMADAVTEHEEAVLTNIAFMEAVHARSYSSIFS 115 Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 +L + + F E + KA L++ + E L+ Sbjct: 116 TLCSTVEVDDAFRWSEENTYLQKKARLILEHYEA--------------DEPLKKKI-AST 160 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 161 FLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLDEAKK 220 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 +E + + +L + +E Y + + + ++ + AN+ +G E LF Sbjct: 221 QEIKDFAFNLLFDLYNIECKYTEDLYDAIGL---TEDVKVFLHYNANKALMNLGFEALFP 277 Query: 315 Y---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NP + + + +FF + Y G + Sbjct: 278 PEVCRVNPAILAALSPNSDENHDFFSGSGSSYVIGKAV 315 >gi|253990649|ref|YP_003042005.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782099|emb|CAQ85263.1| ribonucleoside-diphosphate reductase 2 beta chain [Photorhabdus asymbiotica] Length = 319 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 68/336 (20%), Positives = 125/336 (37%), Gaps = 34/336 (10%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 + N+L K W N W+P +VP+ +D+ W + LT +E+ + R Sbjct: 7 CAINWNRLKDDKDLEVWN---RLTTNFWLPEKVPLSNDIPSWNT---LTAEEKKLTIRVF 60 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGE 144 +++ A+ P + +F EAVH+ ++ I ++L L D + Sbjct: 61 TGLTLLDTIQNTVGAPALMEDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTADVDD 120 Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 + ++ KA L Y D L+ V E FY+G Sbjct: 121 AYYWSENNLALQNKAKIILNYY--------------CDSHPLKKKV-ASVFLESFLFYSG 165 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 F + K+ A+ + I+RDE++H + Q + P+ KE + + ++ Sbjct: 166 FYLPMYWSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQQSLNKYPNSEKKEIKDFTFSL 225 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFP 321 L + EI Y + VG ++++ + AN+ +G E LF +P Sbjct: 226 LFDLYENEIKYTEDLY--DIVGWT-EDVKKFLHYNANKALMNLGYEALFLSEMTDVSPAI 282 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 283 LSALSPGANENHDFFSGSGSSYVIGKAVNTEDEDWD 318 >gi|227833933|ref|YP_002835640.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|262184936|ref|ZP_06044357.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|227454949|gb|ACP33702.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] Length = 329 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 127/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P +VP+ +D+ WK+ LT+ E+ R Sbjct: 20 NWNTIPDEKDLEVWD---RLTGNFWLPEKVPVSNDIPSWKT---LTEKEQETTMRVFAGL 73 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P AF E+VH+ ++ I +L + F Sbjct: 74 TLLDTIQGTVGAVSLLPDAVTPHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA + Y Q D + + + E FY+GF Sbjct: 134 WSEENENLQRKAKIVMSYYQ-------------GDNPLKKKV--ASTLLESFLFYSGFFL 178 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q + +E + + +L++ Sbjct: 179 PMHFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQGYQKLSEPEQEEMKGYAFDLLYD 238 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI Y + + +G ++++++ AN+ + +G E LF E +P S Sbjct: 239 LYENEIDYTEDLYDE--LGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G + WD Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEETTDDDWD 328 >gi|76875271|emb|CAI86492.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pseudoalteromonas haloplanktis TAC125] Length = 359 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 131/311 (42%), Gaps = 24/311 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L D E+ + NL + +S+ Sbjct: 16 KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPDHEKHIFLSNLKYQTLLDSVQG 72 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ +F+ I+ Sbjct: 73 RSPNVALLPIVSLPELETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISE 132 Query: 158 KANWALQYTQTLSS-----PSFTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A+ +Y L + + G + + ++ L + + E + F Sbjct: 133 RADAVTKYYDDLINSVSLYNLYGEGKHEINGKSVVVNLFELKKKLYLAMMSVNILEAIRF 192 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL+ ++N ++ ++P + + Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQC 252 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + ++ M +A E +A G +GLN QY+++I N R IG FK Sbjct: 253 RDEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGFPAQFKNN 312 Query: 317 ENPFPWMSEVI 327 NP PW++ + Sbjct: 313 SNPIPWINSWL 323 >gi|113200701|ref|YP_717864.1| ribonucleotide reductase subunit B [Synechococcus phage syn9] gi|76574600|gb|ABA47165.1| ribonucleotide reductase subunit B [Synechococcus phage syn9] Length = 387 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 78/362 (21%), Positives = 138/362 (38%), Gaps = 27/362 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + EK V + KY W P EV +Q D + + Sbjct: 14 VFNKEKVDTKKQPMFFGQPLGVQRYDSYKYPVFDRLTQQQLGYFWRPEEVSLQKDRSDYA 73 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 LT++++ + NL + +S+ +A + S PE + F E +HS Sbjct: 74 Q---LTENQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHSR 130 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT----------- 178 ++ +II ++ + ++F+ E + +A+ + + G Sbjct: 131 SYTHIIKNVYPNPSDVFDTILEDERVLERASSVTESYDDFIQHAQEYGNGTMWELAKEGH 190 Query: 179 ------KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 + + L + EG+ FY FA + G M G A+ I RDE+ Sbjct: 191 VAGQYDRRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDEN 250 Query: 233 LHLNFGIDVINQIKI-ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL +++N+ + ++P + KE + M E +A G +GLN Sbjct: 251 QHLVITQNILNKWREGDDPEMAIIAKEEEVNVVDMFKRTVNEEKRWADYLFKDGSMIGLN 310 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQ 345 Y+++IANRR IGL+P++ NP PW ++ K ++N ET + Y Sbjct: 311 DRLLHNYVEWIANRRMKAIGLKPIYDIPAKNNPLPWTEHWLNSKGQQNAPQETEIESYVV 370 Query: 346 GA 347 G Sbjct: 371 GG 372 >gi|315126539|ref|YP_004068542.1| ribonucleotide-diphosphate reductase subunit beta [Pseudoalteromonas sp. SM9913] gi|315015053|gb|ADT68391.1| ribonucleotide-diphosphate reductase subunit beta [Pseudoalteromonas sp. SM9913] Length = 376 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 131/311 (42%), Gaps = 24/311 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPDHEKHIFLSNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ +F+ I+ Sbjct: 90 RSPNVALLPIVSIPELETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISE 149 Query: 158 KANWALQYTQTLSS-----PSFTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A+ Y L + + G D + ++ L + + E + F Sbjct: 150 RADAVTTYYDDLINSVSLYNLYGEGKHDINGETVVVNLFELKKKLYLAMMSVNILEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL+ ++N ++ ++P + + Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++++ M +A E +A G +GLN QY+++I N R IGL F Sbjct: 270 REEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGLPAQFDNN 329 Query: 317 ENPFPWMSEVI 327 NP PW++ + Sbjct: 330 SNPIPWINSWL 340 >gi|319406095|emb|CBI79725.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp. AR 15-3] Length = 324 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 62/338 (18%), Positives = 123/338 (36%), Gaps = 29/338 (8%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + K + + N+L K W N W+P +VP+ +D+ W S LT+ Sbjct: 2 TKITTKNPVVCAINWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTE 55 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +ER + R +++ +++ L AF EAVH+ ++ I + Sbjct: 56 EERKLTIRVFTGLTLLDTVQNTVGAISLIADAVTEHEEAVLTNIAFMEAVHARSYSSIFS 115 Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 +L + + F E + KA L++ + E L+ Sbjct: 116 TLCSTVEVDDAFRWSEENTYLQKKARLILEHYEA--------------NEPLKKKI-AST 160 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 161 LLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLHEAKK 220 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 +E + + +L + +E Y + + + ++ + AN+ +G E LF Sbjct: 221 QEIKDFAFNILFDLYNIECKYTEDLYDAIGL---TEDVKVFLHYNANKALMNLGFEALFP 277 Query: 315 Y---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NP + + + +FF + Y G + Sbjct: 278 PEVCRVNPAILAALSPNSDENHDFFSGSGSSYVIGKAV 315 >gi|324525159|gb|ADY48515.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum] Length = 240 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 70/255 (27%), Positives = 106/255 (41%), Gaps = 26/255 (10%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D+ +L + P+KY W Y +A + W E+ + D A W+ LTD ER Sbjct: 9 SDEPLLAENPSRFVIFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWE---KLTDGER 65 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I R L FFA+S+ +V N+ + PE R + Q E VHS + +I + Sbjct: 66 FFISRVLSFFAASDGIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVHSEMYSKMIEAYI 125 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D E F+ + I KA+WAL++ +SP + + Sbjct: 126 KDPKEQMVHFDAIHQFECIKKKADWALRWIDDRNSP-------------FPVRLIAFAAV 172 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG+ F FA I L + M G+ + I RDE LH +F + IK K Sbjct: 173 EGIMFSGSFAAIFWLKKRGVMKGLTHSNELISRDEGLHRDFACLLYKYIK-------HKP 225 Query: 257 FQQKSRTMLHEATLL 271 Q++ ++ EA L Sbjct: 226 SQEQVYEIIKEAVSL 240 >gi|89074073|ref|ZP_01160574.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium sp. SKA34] gi|89050211|gb|EAR55722.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium sp. SKA34] Length = 377 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 132/314 (42%), Gaps = 28/314 (8%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P EV + D + N L D E+ + NL + +S+ + Sbjct: 35 EIFEKLIEKQLSFFWRPEEVDVSGDRINY---NNLPDHEKHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +II ++ + +F+ E I +A Sbjct: 92 PNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIVNNPSVVFDDIVENEHIVKRA 151 Query: 160 NWALQYTQTLSSPS-----------------FTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 +Y L + + FT ++ ++ L E + FY Sbjct: 152 GDISKYYDDLITVTNDYNRFGEGNHSANGIPFTVSLRELKKKLYLCLMSVNA-LEAIRFY 210 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLWT--KEFQ 258 FA + M G A+ + I RDE+LHL ++N ++ ++P + E + Sbjct: 211 VSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILNLLRNGHDDPEMVEIATECE 270 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-T 316 Q + A E +A G +GLN QY+++I N R +GL P ++ T Sbjct: 271 QDCFDLFKAAAEQEKEWADYLFKDGSMIGLNKQILCQYVEYITNLRMVAVGLRPAYEGAT 330 Query: 317 ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 331 QNPIPWINSWLSSD 344 >gi|119387083|ref|YP_918138.1| ribonucleotide-diphosphate reductase subunit beta [Paracoccus denitrificans PD1222] gi|119377678|gb|ABL72442.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Paracoccus denitrificans PD1222] Length = 329 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 68/347 (19%), Positives = 121/347 (34%), Gaps = 34/347 (9%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R+ R + N+L K W N W+P +VP+ +D+ W + L Sbjct: 6 RMKDHAMRTPVRAINWNRLEDEKDLEVWN---RLTVNFWLPEKVPLSNDVQSWAT---LR 59 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +ER + R +++ A+ P L AF EAVH+ ++ I Sbjct: 60 PEERELTIRVFTGLTLLDTIQNTVGAPAMMPDALTPHEEAVLSNIAFMEAVHARSYSSIF 119 Query: 136 TSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++L L F E P + KA L+ + S P + Sbjct: 120 STLCLTPEVDAAFRWAEENPHLQQKARLVLEEYKAGSDP--------------LKRKIAS 165 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 V E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 166 VFLESFMFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLERLGEAE 225 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + + +++ + +E Y E + + ++ + AN+ +G E LF Sbjct: 226 RAALKDFAFSLIFDLYDIEAKYTAELYDGIGL---TEDVKSFLHYNANKALQNLGYEALF 282 Query: 314 KYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 NP + D + +FF + Y G + WD Sbjct: 283 PPQACEVNPAILAALSPDSE-NHDFFSGSGSSYVIGKAVATEDEDWD 328 >gi|228926484|ref|ZP_04089556.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228833308|gb|EEM78873.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 322 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 74/309 (23%), Positives = 130/309 (42%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AYA E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYAEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|261343568|ref|ZP_05971213.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] gi|282568717|gb|EFB74252.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia rustigianii DSM 4541] Length = 323 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 120/330 (36%), Gaps = 31/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W + LT E+ + R Sbjct: 14 NWNRIQDDKDLEVWN---RLTTNFWLPEKVPLSNDINSWNT---LTATEKKLTIRVFTGL 67 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + P L +F EAVH+ ++ I ++L D E + Sbjct: 68 TLLDTIQNTVGAPCLMADAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDEAYR 127 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y D L+ V E FY+GF Sbjct: 128 WSEENSALQNKAKIILSYY--------------CDSHPLKKKV-ASVFLESFLFYSGFYL 172 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E ++ + ++L + Sbjct: 173 PMYWSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLATYNEQQQNEIKEFTFSLLFD 232 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI Y E VG + + ++ + AN+ +G E LF +P + Sbjct: 233 LYENEIKYTQELY--DSVGWS-EDVKSFLHYNANKALMNLGYEALFPEAITQVSPEILSA 289 Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352 D + +FF + Y + + D Sbjct: 290 LSPDANENHDFFSGSGSSYVIGKAVSTEDD 319 >gi|239917558|ref|YP_002957116.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Micrococcus luteus NCTC 2665] gi|281413955|ref|ZP_06245697.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Micrococcus luteus NCTC 2665] gi|239838765|gb|ACS30562.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Micrococcus luteus NCTC 2665] Length = 323 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 130/333 (39%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W NN W+P +VP+ +D+ W + LTD+ERL+ R Sbjct: 14 NWNRIQDEKDVEVWN---RLVNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMRVFTGL 67 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P L AF E+VH+ ++ I ++L E F Sbjct: 68 TLLDTIQGTVGAVSLIPDAMTPHEEAVLTNIAFMESVHAKSYSSIFSTLASTPEIDEAFR 127 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 RE ++ AKA ++ D + + + E FY+GF Sbjct: 128 WSRENRNLQAKARLIVERY---------------DGQDPYKKKIASTLLESFLFYSGFYW 172 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + L ++ A+ + I+RDE++H + + P +E + + +L E Sbjct: 173 PMYLSAHARLTNTADLIRLIIRDEAVHGYYIGYKYQRSIETLPEEKREELKAFTFELLFE 232 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y H+ + A ++++ + AN+ +G EP+F NP + Sbjct: 233 LYENEVEYTHDLYDAVGL---AEDVKKFLHYNANKALMNLGYEPMFPAETTNVNPAILSA 289 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 290 LSPNSDENHDFFSGSGSSYVIGKAENTEDEDWD 322 >gi|56418235|gb|AAV91049.1| ribonucleotide reductase beta subunit [Grouper iridovirus] Length = 384 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 78/319 (24%), Positives = 134/319 (42%), Gaps = 19/319 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P KY WA + + HW+ TEV ++DD+ WKS LT E+ I L F Sbjct: 73 CFKPFKYSWAEDVRVKHERIHWVETEVNLRDDVTDWKS-GALTQQEKEFISCVLRLFTQL 131 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E ++ + Sbjct: 132 DVEVGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YSAFVAY 190 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T K ++ + L V+ EG+ + F +L+ Sbjct: 191 KEMTDKLDFMKSMDVSTI-------------PNLARSLFKAVLNEGVSLFAAFVMLLAFQ 237 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 + +M G+ + ++ +RDE++H+ + + E P L T++ + + A LE Sbjct: 238 KRGRMKGMGKVVEWSVRDENIHVEGVSRLFETLCAEYPWLMTEKLVRDCKKDAERAAELE 297 Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVID 328 A+ GL S + Y+ ++ N R +GL L +ENP PW+ +I+ Sbjct: 298 FAFIDLAFSYCPALDGLTPSSVKNYVLYVINLRASHMGLPKLMASAPSENPLPWVKWLIE 357 Query: 329 LKKEKNFFETRVTEYQQGA 347 NFFE VTEY+ G Sbjct: 358 GADLTNFFENHVTEYETGG 376 >gi|114563305|ref|YP_750818.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella frigidimarina NCIMB 400] gi|114334598|gb|ABI71980.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Shewanella frigidimarina NCIMB 400] Length = 376 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 68/314 (21%), Positives = 127/314 (40%), Gaps = 24/314 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDF---GNLPEHEQHIFLSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ + +F+ + I Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNNPSLVFDDIVQNDEILK 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + + GT + ++ L + E + F Sbjct: 150 RAGDIAAYYDDLINLTQINNLLGEGTHIINGKEITVNSRILKKSLYLCMMSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHLN ++ ++ ++P + E Sbjct: 210 YVSFACSFAFAERRVMEGNAKIIRLIARDEALHLNSTQHILALMQGGKDDPEMGEIAAEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q++ + +A E +A G +GLN QY++FI N+R + L + Sbjct: 270 KQEAYDLFVKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEFITNQRMKSVHLPQPYDEQ 329 Query: 317 ENPFPWMSEVIDLK 330 NP PWM ++ Sbjct: 330 SNPLPWMKNWLESD 343 >gi|30261453|ref|NP_843830.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Ames] gi|47526645|ref|YP_017994.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. 'Ames Ancestor'] gi|49184287|ref|YP_027539.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Sterne] gi|49477196|ref|YP_035577.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65318723|ref|ZP_00391682.1| COG0208: Ribonucleotide reductase, beta subunit [Bacillus anthracis str. A2012] gi|118476922|ref|YP_894073.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis str. Al Hakam] gi|165870361|ref|ZP_02215016.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0488] gi|167634337|ref|ZP_02392658.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0442] gi|167639338|ref|ZP_02397610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0193] gi|170686782|ref|ZP_02878002.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0465] gi|170706310|ref|ZP_02896771.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0389] gi|177651561|ref|ZP_02934350.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0174] gi|190568085|ref|ZP_03020995.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|196035278|ref|ZP_03102683.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus W] gi|196046555|ref|ZP_03113780.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB108] gi|218902561|ref|YP_002450395.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH820] gi|225863317|ref|YP_002748695.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB102] gi|227815798|ref|YP_002815807.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. CDC 684] gi|228914025|ref|ZP_04077647.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228932735|ref|ZP_04095607.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945050|ref|ZP_04107411.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090407|ref|ZP_04221650.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-42] gi|229120993|ref|ZP_04250235.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 95/8201] gi|229183646|ref|ZP_04310869.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BGSC 6E1] gi|229602752|ref|YP_002865867.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0248] gi|254682483|ref|ZP_05146344.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. CNEVA-9066] gi|254726146|ref|ZP_05187928.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. A1055] gi|254733899|ref|ZP_05191613.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Western North America USA6153] gi|254740411|ref|ZP_05198102.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Kruger B] gi|254753802|ref|ZP_05205837.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Vollum] gi|254758897|ref|ZP_05210924.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. Australia 94] gi|301052993|ref|YP_003791204.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis CI] gi|30255307|gb|AAP25316.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. Ames] gi|47501793|gb|AAT30469.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49178214|gb|AAT53590.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. Sterne] gi|49328752|gb|AAT59398.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|72414680|emb|CAG28950.1| ribonucleoside-diphosphate reductase class Ib beta chain [Bacillus anthracis] gi|118416147|gb|ABK84566.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Bacillus thuringiensis str. Al Hakam] gi|157955314|gb|ABW06029.1| NrdF [Bacillus thuringiensis serovar finitimus] gi|164713856|gb|EDR19378.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0488] gi|167512777|gb|EDR88151.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0193] gi|167530225|gb|EDR92951.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0442] gi|170128844|gb|EDS97710.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0389] gi|170669305|gb|EDT20048.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0465] gi|172082839|gb|EDT67902.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0174] gi|190560819|gb|EDV14794.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|195991955|gb|EDX55918.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus W] gi|196022739|gb|EDX61421.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB108] gi|218537212|gb|ACK89610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH820] gi|225785957|gb|ACO26174.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus 03BB102] gi|227004217|gb|ACP13960.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. CDC 684] gi|228599889|gb|EEK57486.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BGSC 6E1] gi|228662653|gb|EEL18251.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 95/8201] gi|228692990|gb|EEL46708.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-42] gi|228814719|gb|EEM60979.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826940|gb|EEM72702.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228845630|gb|EEM90659.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267160|gb|ACQ48797.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus anthracis str. A0248] gi|300375162|gb|ADK04066.1| ribonucleotide-diphosphate reductase beta subunit [Bacillus cereus biovar anthracis str. CI] gi|324325470|gb|ADY20730.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis serovar finitimus YBT-020] Length = 322 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 73/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|332306884|ref|YP_004434735.1| Ribonucleoside-diphosphate reductase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174213|gb|AEE23467.1| Ribonucleoside-diphosphate reductase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 376 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 123/314 (39%), Gaps = 24/314 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ L++ E+ + NL + +S+ Sbjct: 33 KHSIFEKLIEKQISFFWRPEEVDVSKDRVDFQ---KLSESEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE + +F E +HS ++ +I+ +L D +F E I Sbjct: 90 RSPNIAFLPIISIPELETWTETWSFFETIHSRSYTHILRNLFGDPSSIFADIVENEQIKK 149 Query: 158 KANWALQYTQTLSS-----PSFTTGTKDADQE-----------FLQDLFVFYVVFEGMWF 201 +A +Y L + GT + + E L E + F Sbjct: 150 RAADISKYYDDLIFYTQLWQTLGEGTHNINGEEHVVTMRSLKVKLFLCMNSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EF 257 Y FA + M G ++ + I RDE+LHL ++N E+ Sbjct: 210 YVSFACTFAFAERELMEGNSKIIRLISRDENLHLTSTQHILNLWAKGKDDPEMAEIAIEY 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q++ + +A E +A G +GLN QY++FIAN R IGL F Sbjct: 270 KQQATDIFLDAVNQEKEWAEYLFQNGSMIGLNKDILCQYVEFIANHRMSAIGLGQPFDIK 329 Query: 317 ENPFPWMSEVIDLK 330 NP PWM+ ++ Sbjct: 330 NNPLPWMNNYLNSD 343 >gi|289705575|ref|ZP_06501967.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus luteus SK58] gi|289557804|gb|EFD51103.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus luteus SK58] Length = 323 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 130/333 (39%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W NN W+P +VP+ +D+ W + LTD+ERL+ R Sbjct: 14 NWNRIQDEKDVEVWN---RLVNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMRVFTGL 67 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P L AF E+VH+ ++ I ++L E F Sbjct: 68 TLLDTIQGTVGAVSLIPDAMTPHEEAVLTNIAFMESVHAKSYSSIFSTLASTPEIDEAFR 127 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 RE ++ AKA ++ D + + + E FY+GF Sbjct: 128 WSRENRNLQAKAGLIVERY---------------DGQDPYKKKIASTLLESFLFYSGFYW 172 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + L ++ A+ + I+RDE++H + + P +E + + +L E Sbjct: 173 PMYLSAHARLTNTADLIRLIIRDEAVHGYYIGYKYQRSIETLPEEKREELKAFTFELLFE 232 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y H+ + A ++++ + AN+ +G EP+F NP + Sbjct: 233 LYENEVEYTHDLYDAVGL---AEDVKKFLHYNANKALMNLGYEPMFPAETTNVNPAILSA 289 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 290 LSPNSDENHDFFSGSGSSYVIGKAENTEDEDWD 322 >gi|190896546|gb|ACE96786.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWMDG--------------SESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|332534563|ref|ZP_08410398.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332035983|gb|EGI72462.1| ribonucleotide reductase of class Ia (aerobic), beta subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 376 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 132/311 (42%), Gaps = 24/311 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L D E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPDHEKHIFLSNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ +F+ I+ Sbjct: 90 RSPNVALLPIVSLPELETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISE 149 Query: 158 KANWALQYTQTLSS-----PSFTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A+ +Y L + + G + + ++ L + + E + F Sbjct: 150 RADAVTKYYDDLINSVSLYNLYGEGKHEINGKTVIINLFELKKKLYLAMMSVNILEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL+ ++N ++ ++P + + Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + ++ M +A E +A G +GLN QY+++I N R IGL F+ Sbjct: 270 RDEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGLPAQFENN 329 Query: 317 ENPFPWMSEVI 327 NP PW++ + Sbjct: 330 SNPIPWINSWL 340 >gi|212712302|ref|ZP_03320430.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM 30120] gi|212685048|gb|EEB44576.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM 30120] Length = 380 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 76/339 (22%), Positives = 136/339 (40%), Gaps = 24/339 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + +K + + +V + KY + + W P EV + D + Sbjct: 9 IFSQKKNNQLLEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVARDRIDY- 67 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 N L D E+ + NL + +S+ + +A +S PE ++ +F E +HS Sbjct: 68 --NALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSR 125 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKD---- 180 ++ +II ++ D +F+ E I +A Y TL + F GT Sbjct: 126 SYTHIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTLIEMTNYYHMFGEGTHTFEGK 185 Query: 181 -------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 A ++ L + E + FY FA + M G A+ + I RDE+L Sbjct: 186 EITVSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEAL 245 Query: 234 HLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL ++N ++ E +++ + +A E +A +G +GLN Sbjct: 246 HLTGTQHMLNLLRSGQDDPEMAEIAAECEEECYRLFVDAAEQEKEWAEYLFSEGSMIGLN 305 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R +GL+ F+ NP PW++ + Sbjct: 306 KDILCQYVEYITNIRMQAVGLKLPFEARSNPIPWINAWL 344 >gi|190896532|gb|ACE96779.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896554|gb|ACE96790.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 60/246 (24%), Positives = 107/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|157371959|ref|YP_001479948.1| ribonucleotide-diphosphate reductase subunit beta [Serratia proteamaculans 568] gi|157323723|gb|ABV42820.1| Ribonucleoside-diphosphate reductase [Serratia proteamaculans 568] Length = 323 Score = 222 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W +N W+P +VP+ +D+ W + LT E+ + R Sbjct: 14 NWNIIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWAT---LTPKEQQLTIRVFTGL 67 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ A+ P +F EAVH+ ++ I ++L D + + Sbjct: 68 TLLDTIQNTVGAPALIADAITPHEEAVYSNISFMEAVHARSYSSIFSTLCQTPDVDDAYR 127 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA+ L + ++ + L V E FY+GF Sbjct: 128 WSEENRALQKKASIILAHYRS--------------DDPLMKKV-ASVFLESFLFYSGFYL 172 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + ++ + + +L + Sbjct: 173 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDAARRQQVKNFAFDLLQD 232 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 E+ Y E VG + ++ + AN+ +G E LF + NP + Sbjct: 233 LYDNEVRYTEELYDG--VGWT-EDVKTFLHYNANKALMNLGYEALFPPSMAEVNPAILSA 289 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAVNTEDDDWD 322 >gi|212712928|ref|ZP_03321056.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM 30120] gi|212684406|gb|EEB43934.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM 30120] Length = 323 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 120/330 (36%), Gaps = 31/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P ++P+ +D W + L DE+ + R Sbjct: 14 NWNRIQDDKDLEVWN---RLTSNFWLPEKIPLSNDTVSWNT---LKTDEQQLTIRVFTGL 67 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + P L +F EAVH+ ++ I ++L D E + Sbjct: 68 TLLDTIQNTVGAPCLMEDAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDEAYR 127 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y D L+ V E FY+GF Sbjct: 128 WSEENTALQNKAKIILSYY--------------CDSHPLKKKV-ASVFLESFLFYSGFYL 172 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E + + ++L + Sbjct: 173 PMYWSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKALAHYSEQERNEIKDFTFSLLLD 232 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI Y E VG + + ++ + AN+ +G E LF + +P + Sbjct: 233 LYENEIKYTQELYDG--VGWS-EDVKSFLHYNANKALMNLGYEALFPDSITQVSPEILSA 289 Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352 D + +FF + Y + + D Sbjct: 290 LSPDANENHDFFSGSGSSYVIGKAVSTEDD 319 >gi|255324325|ref|ZP_05365446.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium tuberculostearicum SK141] gi|255298655|gb|EET77951.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium tuberculostearicum SK141] Length = 329 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P +VP+ +DL WK+ LT+ E+ R Sbjct: 20 NWNSIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGL 73 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ AF E+VH+ ++ I +L + F Sbjct: 74 TLLDTIQGTVGAISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y + V + E FY+GF Sbjct: 134 WSEENENLQKKAKIILSYY---------------KGDDPLKKKVASTLLESFLFYSGFYL 178 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q + E ++ + +L++ Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQAYKQLDEEHQAELKEYTFDLLYD 238 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI Y + +G ++++++ AN+ + +G E LF E +P S Sbjct: 239 LYDNEIDYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G + WD Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDDDWD 328 >gi|221134587|ref|ZP_03560892.1| ribonucleotide-diphosphate reductase subunit beta [Glaciecola sp. HTCC2999] Length = 376 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 75/314 (23%), Positives = 132/314 (42%), Gaps = 24/314 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ GL+D E+ + NL + +S+ Sbjct: 33 KHAIFEKLIEKQISFFWRPEEVDVSKDRMDFQ---GLSDAEKHIFISNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +I+ +L D +F E I Sbjct: 90 RSPNIALLPIVSLPELETWIETWSFFETIHSRSYTHILRNLFTDPSNIFEDIVENEEIKR 149 Query: 158 KANWALQYTQTLSS-----PSFTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A +Y L + GT + + ++ L E + F Sbjct: 150 RAADISKYYDDLIFATQLWQTQGEGTHEVNGETHIINMRELKKKLYLCMNSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEF 257 Y FA + M G ++ + I RDE+LHL V+N ++P + KE Sbjct: 210 YVSFACTFAFAERELMEGNSKIIRLIARDENLHLTSTQHVLNLWAKGKDDPEMAEIAKEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +Q++R + A E +A G +GLN Y+++IAN+R IGL F + Sbjct: 270 EQEARDIFLNAVQQEKEWAAFLFNNGSMIGLNEEILCSYVEYIANQRMAAIGLGQPFDVS 329 Query: 317 ENPFPWMSEVIDLK 330 NP PWM+ ++ Sbjct: 330 SNPLPWMNNYLNSD 343 >gi|325291517|ref|YP_004277381.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium sp. H13-3] gi|325059370|gb|ADY63061.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium sp. H13-3] Length = 324 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 60/333 (18%), Positives = 120/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W + L +E+ + R Sbjct: 15 NWNRIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWGT---LKPEEQTLTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + + + P L +F EAVH+ ++ I ++L D + + Sbjct: 69 TLLDTIQNGVGSVRLMADSATPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDDAYR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ ++ D + V V E FY+GF Sbjct: 129 WSEENEFLQRKSALIMREY---------------DSGNPLKMKVASVFLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 174 PMFWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALERLGEAEKQEIKDFAFDLLLE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + +Q++ + AN+ +G E LF NP + Sbjct: 234 LYDNEAKYTQDLYDGVGL---TEDVKQFLHYNANKALMNLGYEALFPPEACRVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323 >gi|308067265|ref|YP_003868870.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] gi|305856544|gb|ADM68332.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] Length = 343 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 79/341 (23%), Positives = 152/341 (44%), Gaps = 19/341 (5%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + N + + S + ++ ++ Y NHW+P E+PM D + + Sbjct: 9 TEAPNRSTRIIEGENSGILNWNDIRMPHMYKLYKVLLLNHWIPDEIPMSKDASQF---PV 65 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L +E+ K N+G A +S+ V + R+ ++ +E VH+ ++ Y Sbjct: 66 LDAEEQRTFKINIGLLAVLDSMQTM-FVGDVKRYFTDSSLEAISAIIGQQEVVHNQSYSY 124 Query: 134 IITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 +++SL D+ E+F ++ P + + T S + + + + V Sbjct: 125 VLSSLVSDQEQKEIFEYWKNDPVLLER--------NTFISDIYQEFRDEQNPQTFFQAMV 176 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 ++ EG++FY+ FA +L R KM+ ++ YI RDE+ H F +V Q+ + P Sbjct: 177 ADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQLLSDFPE 236 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L TKE M++ A LE +AH T+ K G++ Y++++AN R +G++ Sbjct: 237 LNTKENTDYVYRMINRAVELETNWAHYTL-KEVRGIDLNELSDYIKYMANMRLRLLGMDK 295 Query: 312 LFKYTE-NPFPWMSEVID---LKKEKNFFETRVTEYQQGAE 348 ++ + N PW+ D + +FFE + Y + + Sbjct: 296 AYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGD 336 >gi|240849861|ref|YP_002971249.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella grahamii as4aup] gi|240266984|gb|ACS50572.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella grahamii as4aup] Length = 324 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 63/343 (18%), Positives = 122/343 (35%), Gaps = 31/343 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + K + + N+L K W N W+P +VP+ +D+ W S LTD Sbjct: 2 TKITTKNPVVCAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWSS---LTD 55 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +ER + R +++ +++ L AF EAVH+ ++ I + Sbjct: 56 EERKLTIRVFTGLTLLDTIQNTVGAISLLADAITEHEEAVLTNIAFMEAVHARSYSSIFS 115 Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 +L + + F E + KA L+ + + L+ Sbjct: 116 TLCSTVEVDDAFRWSEENIHLQKKARLVLERYEA--------------NDPLKKKI-AST 160 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 161 LLESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLDEAKK 220 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 KE + + +L + +E Y + + + ++ + AN+ +G E LF Sbjct: 221 KEIKDFAFNLLFDLYNIECKYTEDLYDALGL---TEDVKIFLHYNANKALMNLGFEALFP 277 Query: 315 Y---TENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352 NP + + + +FF + Y + D Sbjct: 278 PEVCRVNPAILAALSPNSDENHDFFSGAGSSYVIGKAVATTDD 320 >gi|227329868|ref|ZP_03833892.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 320 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 59/330 (17%), Positives = 123/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + L ER + R Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWGT---LNARERQLTIRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ + P L +F EAVH+ ++ I ++L L + + + Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E ++ K++ L + ++ + L V E FY+GF + Sbjct: 128 ENTALQKKSDIILSHYRS--------------DDPLMKKV-ASVFLESFLFYSGFYLPMY 172 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + ++ + + +L + Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKADPARQQQVKNFAYDLLQDLYD 232 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327 E+ Y E VG ++++ + AN+ +G E LF + NP + Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319 >gi|311741200|ref|ZP_07715024.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium pseudogenitalium ATCC 33035] gi|311303370|gb|EFQ79449.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium pseudogenitalium ATCC 33035] Length = 329 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P +VP+ +DL WK+ LT+ E+ R Sbjct: 20 NWNSIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGL 73 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ AF E+VH+ ++ I +L + F Sbjct: 74 TLLDTIQGTVGAISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y + V + E FY+GF Sbjct: 134 WSEENENLQKKAKIILSYY---------------KGDDPLKKKVASTLLESFLFYSGFYL 178 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q + E ++ + ++++ Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQAYKQLDEEHQAELKEYTFDLVYD 238 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI Y + +G ++++++ AN+ + +G E LF E +P S Sbjct: 239 LYDNEIDYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G + WD Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDDDWD 328 >gi|119472403|ref|ZP_01614521.1| ribonucleotide-diphosphate reductase beta subunit [Alteromonadales bacterium TW-7] gi|119444925|gb|EAW26223.1| ribonucleotide-diphosphate reductase beta subunit [Alteromonadales bacterium TW-7] Length = 376 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 131/311 (42%), Gaps = 24/311 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D ++ L + E+ + NL + +S+ Sbjct: 33 KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPEHEKHIFLSNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ +F+ I+ Sbjct: 90 RSPNVALLPIVSIPELETWIETWAFSETIHSRSYTHIIRNVTQSPELIFDDIVSNDKISE 149 Query: 158 KANWALQYTQTLSS-----PSFTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A+ Y L + + G + + ++ L + + E + F Sbjct: 150 RADAVTTYYDDLINSVSLYNLYGEGKHEINGKTVVVNLFELKKKLYLAMMSVNILEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL+ ++N ++ ++P + + Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + ++ M +A E +A G +GLN QY+++I N R IGL F+ Sbjct: 270 RDEAIKMFVQAAEQEKEWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGLPAQFENN 329 Query: 317 ENPFPWMSEVI 327 NP PW++ + Sbjct: 330 SNPIPWINSWL 340 >gi|326784480|ref|YP_004325029.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7] gi|310004513|gb|ADO98905.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7] Length = 388 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 80/336 (23%), Positives = 135/336 (40%), Gaps = 28/336 (8%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 ++ W P EV +Q D A + LTD ++ + NL + +S+ Sbjct: 41 YRFPTFDRLTQQQLGYFWRPEEVSLQKDRADYAQ---LTDQQKHIFTSNLKYQIMLDSVQ 97 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 +A + S PE + F E +HS ++ YII ++ D ELF+ +I Sbjct: 98 GRAPGMAFIPYCSLPELEGCMQVWQFMEMIHSRSYTYIIKNVYSDPSELFDTILTDDNIL 157 Query: 157 AKANWALQYTQTLSSPSFT-----------------TGTKDADQEFLQDLFVFYVVFEGM 199 ++A + + + T+ +++L + EG+ Sbjct: 158 SRAESVTKSYDDFINYAHEYDQSNAWKEDMRSHPNSEWTRRDLKKYLYKAVANVNILEGI 217 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTK 255 FY FA + G M G A+ I RDES HL ++ ++P + + Sbjct: 218 RFYVSFACSFAFGENKLMEGSAKILSLIARDESQHLVLTQQILKNWTEGKDDPEMKEIAE 277 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF- 313 E Q+ M E A+A+ +G +GLN Y+++IANRR IGL+P++ Sbjct: 278 EEQETVEQMFKACVDEEKAWANYLFKEGSMIGLNERLLHNYVEWIANRRMKAIGLKPIYD 337 Query: 314 -KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347 NP PW ++ K ++N ET + Y G Sbjct: 338 QPLRNNPLPWTEHWLNSKGQQNAPQETEIESYVVGG 373 >gi|227112968|ref|ZP_03826624.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 320 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 59/330 (17%), Positives = 123/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W + L ER + R Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWST---LNARERQLTIRVFTGLTLL 67 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ + P L +F EAVH+ ++ I ++L L + + + Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E ++ K++ L + ++ + L V E FY+GF + Sbjct: 128 ENTALQKKSDIILSHYRS--------------DDPLMKKV-ASVFLESFLFYSGFYLPMY 172 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + ++ + + +L + Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKVDSARHQQVKNFAYDLLQDLYD 232 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327 E+ Y E VG ++++ + AN+ +G E LF + NP + Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319 >gi|294788520|ref|ZP_06753762.1| ribonucleoside-diphosphate reductase, beta subunit [Simonsiella muelleri ATCC 29453] gi|294483397|gb|EFG31082.1| ribonucleoside-diphosphate reductase, beta subunit [Simonsiella muelleri ATCC 29453] Length = 384 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 127/316 (40%), Gaps = 27/316 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L + E+ + NL + +S+ Sbjct: 40 KYEVFEKLIEKQISFFWRPEEVDLSRDRMDYA---KLPEHEKHIFISNLKYQTLLDSIQG 96 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ + I A Sbjct: 97 RSPNVALLPLVSIPELETWIETWAFFETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 156 Query: 158 KANWALQYT-----------------QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 +A Y +++ T ++ ++ L V E + Sbjct: 157 RAEDIACYYNDLIEYTQYFNLLGEGKHLINNKEITISLRELKKKLYLCLMCVNV-LEAIR 215 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKE 256 FY FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 216 FYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRNGTDDPEMAEIAAE 275 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + + +A E +A G +GLN QY+++I N R +GL F Sbjct: 276 LHDECVALFKKAAAQEKEWAAYLFKDGSMIGLNKDILGQYVEYITNLRMSAVGLPQAFPK 335 Query: 316 T-ENPFPWMSEVIDLK 330 +NP PW++ + Sbjct: 336 ALQNPIPWINAWLSSD 351 >gi|162139926|ref|YP_339935.2| ribonucleotide-diphosphate reductase subunit beta [Pseudoalteromonas haloplanktis TAC125] Length = 376 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 70/338 (20%), Positives = 140/338 (41%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + + +++ +V++ KY + + W P EV + D ++ Sbjct: 6 FSRKHNNQMEEPMFFGQTVNVSRYDQQKYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPDHEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTGTKDAD--- 182 + +II ++ +F+ I+ +A+ +Y L + + G + + Sbjct: 123 YTHIIRNVTQAPELIFDDIVSNDKISERADAVTKYYDDLINSVSLYNLYGEGKHEINGKS 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VVVNLFELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242 Query: 235 LNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L+ ++N ++ ++P + + + ++ M +A E +A G +GLN Sbjct: 243 LSGTQHILNIMQDGKDDPEMAIVAAQCRDEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R IG FK NP PW++ + Sbjct: 303 HILCQYVEYITNARMTAIGFPAQFKNNSNPIPWINSWL 340 >gi|49475007|ref|YP_033048.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella henselae str. Houston-1] gi|49237812|emb|CAF27007.1| Ribonucleotide reductase beta-chain [Bartonella henselae str. Houston-1] Length = 324 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 122/343 (35%), Gaps = 31/343 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + K + + N+L K W N W+P +VP+ +D+ W S LT+ Sbjct: 2 TKITTKNPVVCAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTE 55 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +ER + R +++ +++ L AF EAVH+ ++ I + Sbjct: 56 EERKLTIRVFTGLTLLDTIQNTVGAISLMADAITEHEEAVLTNIAFMEAVHARSYSSIFS 115 Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 +L + + F E + KA L+ + + L+ Sbjct: 116 TLCSTVEVDDAFRWSEENIHLQKKARLVLERYEG--------------NDPLKKKI-AST 160 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 161 LLESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLDETKK 220 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 KE + + +L + +E Y + + + ++ + AN+ +G E LF Sbjct: 221 KEVKDFAFNLLFDLYNIECKYTEDLYDALGL---TEDVKIFLHYNANKALMNLGFEALFP 277 Query: 315 Y---TENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352 NP + + + +FF + Y + D Sbjct: 278 SEVCRVNPAILAALSPNSDENHDFFSGAGSSYVIGKAVATTDD 320 >gi|190896518|gb|ACE96772.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESCAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ Y NPF M E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVY-YVANPFDGM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|228907084|ref|ZP_04070948.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 200] gi|157955401|gb|ABW06095.1| NrdF [Bacillus thuringiensis serovar toumanoffi] gi|228852588|gb|EEM97378.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 200] Length = 322 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TGYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|209972895|ref|YP_002300342.1| gp4 [Bacillus phage SPO1] gi|209871215|gb|ACI90971.1| gp4 [Bacillus phage SPO1] Length = 346 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 77/323 (23%), Positives = 143/323 (44%), Gaps = 19/323 (5%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S + ++Y + Y +N W+P + + +D+ + + T + +G Sbjct: 27 SGIMNWNDIRYPQMYTIYKQIRSNFWIPQRISLVEDVRQFPNLPKRTQE---AYLDVIGQ 83 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGEL 145 ++ +S+ +VL R LS P + A +EA H ++ Y+++S+ D + E+ Sbjct: 84 LSTLDSIQ-TRLVLEFGRFLSEPTYQPIAANIAQQEATHEESYSYVLSSVVPDTNKQNEV 142 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 F+ + + + + +Y Q + + V VV EG++FY+ F Sbjct: 143 FDKAKTNEDVLKRNDRVYKYYQ--------EFVDNPTPQTFFRALVACVVLEGIYFYSAF 194 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 +L R + MVG + YI RDE H F V+ + E P L T+E M+ Sbjct: 195 TFFYNLARNHLMVGTSTMINYIQRDEVAHAYFFSQVLRYLMAERPELHTEENVNFIYDMM 254 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM-- 323 EA LEI Y+ + + GL+ E Y++ + NRR +GL+ ++ EN PWM Sbjct: 255 QEAADLEIEYSQKILHD-IPGLDLEELEGYIKSLCNRRLRGVGLDDIYAGVENSMPWMIA 313 Query: 324 -SEVIDLKKEKNFFETRVTEYQQ 345 + + + + + FE + Y++ Sbjct: 314 FDDGSNNQTKSDMFEQKSRNYKK 336 >gi|323354474|gb|EGA86313.1| Rnr2p [Saccharomyces cerevisiae VL3] Length = 306 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 18/231 (7%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WAL++ Q DAD F + L F E Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 239 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 G++F FA I L + M G+ + I RDE LH +F + +K + Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNK 290 >gi|152974880|ref|YP_001374397.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023632|gb|ABS21402.1| Ribonucleoside-diphosphate reductase [Bacillus cytotoxicus NVH 391-98] Length = 322 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E+ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQTTYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ N + + L E VH+ ++ +I T+L +E E+F+ + P + KA Sbjct: 74 LVHIENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDQHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P T ++ L V V E FY+GF L L K+ E Sbjct: 134 TGYYRKLLKPQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E ++ Q++++ +L E +E AY E Sbjct: 187 IINLIIRDESIHGVFVGLLAQQIFAELSAEEQEDVQKETQDLLMELYEIETAYTEEIYAS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VGEVNRFVRYNANKGLMNLGLEPRFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|3068719|gb|AAC14561.1| ribonucleoside diphosphate reductase small subunit [Corynebacterium ammoniagenes] Length = 329 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 126/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P ++P+ +D+ W N +T E+L R Sbjct: 20 NWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGL 73 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ + AF E+VH+ ++ I +L E F Sbjct: 74 TLLDTIQGTVGAISLLPDVETMHEEGVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFR 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA + Y D + + + E FY+GF Sbjct: 134 WSEENENLQRKAKIIMSYYN-------------GDDPLKKKV--ASTLLESFLFYSGFYL 178 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + L K+ A+ + I+RDES+H + Q + +E++ + ++++ Sbjct: 179 PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYD 238 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI Y + +G ++++++ AN+ + +G E LF E +P S Sbjct: 239 LYENEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSS 295 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G + WD Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDDDWD 328 >gi|229095937|ref|ZP_04226913.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-29] gi|229114891|ref|ZP_04244304.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-3] gi|228668583|gb|EEL24012.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-3] gi|228687447|gb|EEL41349.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-29] Length = 322 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 +Y + L P T ++ L V V E FY+GF L L K+ E Sbjct: 134 TRYYRRLLKPQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + Q+ E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VDDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|229177859|ref|ZP_04305232.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 172560W] gi|228605650|gb|EEK63098.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus 172560W] Length = 322 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TGYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|300741626|ref|ZP_07071647.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia dentocariosa M567] gi|300380811|gb|EFJ77373.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia dentocariosa M567] Length = 325 Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 64/333 (19%), Positives = 127/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ WK+ LT +E+ + R Sbjct: 16 NWNRLEDDKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT---LTAEEKELTMRVFTGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ AF E+VH+ ++ I ++L + + F Sbjct: 70 TLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLSSTKEIDDAFR 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L Y + V + E FY+GF Sbjct: 130 WASENEHLQKKAKIILAYY---------------TGDDPLKKKVASTLLESFLFYSGFYL 174 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + E ++ + +L+E Sbjct: 175 PMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKESPERQAELKEYTFNLLYE 234 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEV 326 E+AY H VG + ++++ + AN+ +G E +F + N P + Sbjct: 235 LYENEVAYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEAMFPASVTNVSPAILSA 291 Query: 327 I--DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + + +FF + Y G + WD Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324 >gi|260904342|ref|ZP_05912664.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium linens BL2] Length = 326 Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 61/315 (19%), Positives = 121/315 (38%), Gaps = 31/315 (9%) Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 N W+P +VP+ +D+ W + LT++E+ + R +++ +++ Sbjct: 32 RLTGNFWLPEKVPLSNDIPSWAT---LTEEEKTLTMRVFTGLTLLDTIQGTVGAISLIPD 88 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQY 165 P + AF E+VH+ ++ I ++L + E F RE + +KA+ L Y Sbjct: 89 AVTPHEEAVMTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSRENTYLQSKADIILSY 148 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 + + V + E FY+GF + K+ A+ + Sbjct: 149 YR---------------GDDPLKRKVASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIR 193 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 I+RDE++H + + +E + + ++ E E+AY H+ + Sbjct: 194 LIIRDEAVHGYYIGYKYQKGLESQSEERKQELKDYTMNLMFELYENEVAYTHDLYDSVGL 253 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTE 342 A C+ ++ + AN+ +G E +F NP + + + +FF + Sbjct: 254 ---AEDCKMFLHYNANKALMNLGYEAMFPKEVTEVNPAILAALSPNSDENHDFFSGSGSS 310 Query: 343 YQQGAE-----LKWD 352 Y G WD Sbjct: 311 YVIGKAENTEDDDWD 325 >gi|157955319|gb|ABW06033.1| NrdF [Bacillus thuringiensis serovar pakistani] Length = 322 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSTEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|228938567|ref|ZP_04101175.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971446|ref|ZP_04132072.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978059|ref|ZP_04138438.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis Bt407] gi|157955340|gb|ABW06049.1| NrdF [Bacillus thuringiensis serovar thuringiensis] gi|157955368|gb|ABW06070.1| NrdF [Bacillus thuringiensis serovar galechiae] gi|157955384|gb|ABW06082.1| NrdF [Bacillus thuringiensis serovar sotto] gi|228781720|gb|EEM29919.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis Bt407] gi|228788313|gb|EEM36266.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821165|gb|EEM67182.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939076|gb|AEA14972.1| ribonucleotide-diphosphate reductase [Bacillus thuringiensis serovar chinensis CT-43] Length = 322 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TGYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|88859281|ref|ZP_01133921.1| ribonucleotide-diphosphate reductase beta subunit [Pseudoalteromonas tunicata D2] gi|88818298|gb|EAR28113.1| ribonucleotide-diphosphate reductase beta subunit [Pseudoalteromonas tunicata D2] Length = 376 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 129/311 (41%), Gaps = 24/311 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D +++ L D E+ + NL + +S+ Sbjct: 33 KHPIFEKLIEKQLSFFWRPEEVDVSKDRVDFEN---LPDHEKHIFLSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ +F+ + I Sbjct: 90 RSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNVTKQPELIFDDIVDNDKIKE 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A+ +Y L + + G + ++ L + + E + F Sbjct: 150 RADEVTRYYDDLIEYTSIYNLYGEGKHQINDQTVVINLFELKKKLYRAIMSVNILEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEF 257 Y FA + M G A+ + I RDE+LHL+ ++N ++ + + Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQHMLNIMQDGQDDPEMAIVAAQL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +++S M A E +A G +GLN QY+++I N R +GL F T Sbjct: 270 REESIEMFRTAAQQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNVRMSAVGLPQQFSIT 329 Query: 317 ENPFPWMSEVI 327 NP PW++ + Sbjct: 330 SNPIPWINSWL 340 >gi|218233288|ref|YP_002366135.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus B4264] gi|229149653|ref|ZP_04277884.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1550] gi|157955328|gb|ABW06040.1| NrdF [Bacillus thuringiensis serovar entomocidus] gi|157955388|gb|ABW06085.1| NrdF [Bacillus thuringiensis serovar subtoxicus] gi|157955409|gb|ABW06101.1| NrdF [Bacillus cereus] gi|218161245|gb|ACK61237.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus B4264] gi|228633863|gb|EEK90461.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1550] Length = 322 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQDLLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|300859086|ref|YP_003784069.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium pseudotuberculosis FRC41] gi|300686540|gb|ADK29462.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium pseudotuberculosis FRC41] gi|302206792|gb|ADL11134.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium pseudotuberculosis C231] gi|302331346|gb|ADL21540.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium pseudotuberculosis 1002] gi|308277038|gb|ADO26937.1| Ribonucleotide reductase, beta subunit [Corynebacterium pseudotuberculosis I19] Length = 328 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P +VP+ +DL W + N L E+ R Sbjct: 19 NWNSIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLKSWGTLNDL---EKTTTMRVFTGL 72 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ P AF E+VH+ ++ I +L + E F Sbjct: 73 TMLDTIQGTVGAVSMIPDAITPHEEAVYTNIAFMESVHAKSYSNIFMTLASTKEINEAFR 132 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y + V + E FY+GF Sbjct: 133 WSEENENLQKKAKIVLSYYE---------------GADPLKRKVASTLLESFLFYSGFYL 177 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q E +E ++ + +L++ Sbjct: 178 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQQAVREQTPERQEELKEYTFDLLYD 237 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324 EI Y + +G ++++++ AN+ + +G E LF E P + Sbjct: 238 LYDNEIQYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADECKVSPAILSA 294 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G + WD Sbjct: 295 LSPNADENHDFFSGSGSSYVIGKAENTTDDDWD 327 >gi|323333040|gb|EGA74442.1| Rnr2p [Saccharomyces cerevisiae AWRI796] Length = 306 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 18/231 (7%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WAL++ Q DAD F + L F E Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 239 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 G++F FA I L + M G+ + I RDE LH +F + +K + Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNK 290 >gi|56692684|ref|YP_164142.1| ribonucleoside-diphosphate reductase beta subunit [Singapore grouper iridovirus] gi|42517396|gb|AAS18062.1| ribonucleoside-diphosphate reductase beta subunit [Singapore grouper iridovirus] Length = 384 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 77/319 (24%), Positives = 134/319 (42%), Gaps = 19/319 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P KY WA + + HW+ TEV ++DD+ WKS L+ E+ I L F Sbjct: 73 CFKPFKYSWAEDIRVKHERIHWVETEVNLRDDVTDWKS-GALSQQEKEFISCVLRLFTQL 131 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E ++ + Sbjct: 132 DVEVGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YSAFVAY 190 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T K ++ + L V+ EG+ + F +L+ Sbjct: 191 KEMTDKLDFMKSMDVSTI-------------PNLARSLFKAVLNEGVSLFAAFVMLLAFQ 237 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 + +M G+ + ++ +RDE++H+ + + E P L T++ + + A LE Sbjct: 238 KKGRMKGMGKVVEWSVRDENIHVEGVSRLFETLCAEYPWLMTEKLVRDCKKDAERAAELE 297 Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVID 328 A+ GL S + Y+ ++ N R +GL L +ENP PW+ +I+ Sbjct: 298 FAFIDLAFSYCPALDGLTPSSVKNYVLYVINLRASHMGLPKLMASAPSENPLPWVKWLIE 357 Query: 329 LKKEKNFFETRVTEYQQGA 347 NFFE VTEY+ G Sbjct: 358 GADLTNFFENHVTEYETGG 376 >gi|61806080|ref|YP_214440.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2] gi|61374589|gb|AAX44586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2] gi|265525292|gb|ACY76089.1| NrdB [Prochlorococcus phage P-SSM2] Length = 384 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 145/373 (38%), Gaps = 30/373 (8%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MA G++ + E+ V + KY W P EV Sbjct: 1 MAEVKGMT-VFNTEEVNTKKQPMFFGKPLGVQRYDNFKYPSFENLTKQQLGYFWRPEEVS 59 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 +Q D +++ L +++ + NL + +S+ +A + S PE + Sbjct: 60 LQKDRGDYQT---LRPEQKHIYTSNLKYQIMLDSVQGRAPGMAFLPYCSLPELEACMEVW 116 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT-- 178 +F E +HS ++ Y+I ++ D E+F+ I ++A + + + G Sbjct: 117 SFMEMIHSRSYTYVIKNVYADPSEVFDKILSDDRILSRAASVTESYDDFINEAQGWGQSN 176 Query: 179 --KDAD---------------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 +D D + L + EG+ FY FA + G M G A Sbjct: 177 LWRDMDKSLDTSLPVLEMKEVKRKLYRAVTNVNILEGIRFYVSFACSFAFGELKVMEGSA 236 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKI-ENPHLWT--KEFQQKSRTMLHEATLLEIAYAHE 278 + I RDE+ HL +++N + ++P + KE +Q + M + E +A Sbjct: 237 KIISLIARDENQHLAITQNILNNWRKGDDPEMVEIMKEEEQWTYQMFEKCVNEEKMWAEY 296 Query: 279 TMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVIDLKKEKNF 335 G +GLN QY++++ANRR IG++P++ NP PW I K + Sbjct: 297 LFKDGSMIGLNDKLLHQYVEWVANRRMRSIGMKPVYDIAAKNNPLPWTEHWISSKGLQVA 356 Query: 336 -FETRVTEYQQGA 347 ET V Y G Sbjct: 357 PQETEVESYIVGG 369 >gi|326783875|ref|YP_004324269.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7] gi|310003887|gb|ADO98282.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7] Length = 388 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 145/374 (38%), Gaps = 36/374 (9%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSD---------VNQLLPLKYGWAWEKYLSACNNHWMPT 57 ++P +R+ V +K ++ +S V + KY + W P Sbjct: 3 VAPSSRKVERMTVFNKSHVDTKSQPMFFGAPLGVQRYDEYKYPVFDKLTTQMLGYFWRPE 62 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV +Q D + ++S L +++ + NL + +S+ +A + + PE + Sbjct: 63 EVSLQKDRSDYQS---LRPEQKHIFTSNLKYQILLDSVQGRGPGMAFAPYCALPELEGAM 119 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 F E +HS ++ YII ++ + E+F+ + I +AN + + G Sbjct: 120 NVWQFMEMIHSRSYTYIIKNVYPNPAEVFDTILDDEKILKRANSVTASYDDFINDAQEYG 179 Query: 178 -----------------TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 T + L + EG+ FY FA + G M G Sbjct: 180 QGRMWEKDWKDSPSSQWTIHELKRKLYRAVANVNILEGIRFYVSFACSFAFGELKLMEGS 239 Query: 221 AEQYQYIMRDESLHLNFGIDVI-NQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAH 277 A+ I RDE+ HL +++ N + ++P + E + M A E +A Sbjct: 240 AKIISLISRDENQHLVLTQNILKNWMNGDDPEMKQIADEERNNVIGMFRNAVEEEKEWAE 299 Query: 278 ETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKN 334 G +GLN QY+++IAN+R +G +P++ NP PW I K + Sbjct: 300 YLFSGGSMIGLNDKLLNQYVEWIANKRMKALGFDPIYDQPLRNNPLPWTQHWISSKGLQV 359 Query: 335 F-FETRVTEYQQGA 347 ET V Y G Sbjct: 360 APQETEVESYVVGG 373 >gi|295097265|emb|CBK86355.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 319 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 123/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ + ++L D + Sbjct: 67 DTIQNTVGAPALMSDALTPHEEAVMSNISFMEAVHARSYSSVFSTLCQTRDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E S+ KA+ L+Y + E L+ V E FY+GF + Sbjct: 127 ESASLQRKADLVLEYYRA--------------DEPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L + Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKVSAEKREELKGFALDLLMDLYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 E++Y E G + ++ + AN+ +G E LF NP + Sbjct: 232 NELSYTEELYAG--TGW-EEDVKAFLCYNANKALMNLGYEALFPPEMAEVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 289 NADENHDFFSGSGSSYVMGKAVETQDEDWD 318 >gi|229029125|ref|ZP_04185222.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH1271] gi|228732183|gb|EEL83068.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH1271] Length = 322 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TGYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + Q+ E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFTELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|229189534|ref|ZP_04316550.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 10876] gi|228593979|gb|EEK51782.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 10876] Length = 322 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAKEQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|109898789|ref|YP_662044.1| ribonucleotide-diphosphate reductase subunit beta [Pseudoalteromonas atlantica T6c] gi|109701070|gb|ABG40990.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Pseudoalteromonas atlantica T6c] Length = 376 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 122/314 (38%), Gaps = 24/314 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D ++ L++ E+ + NL + +S+ Sbjct: 33 KHSIFEKLIEKQISFFWRPEEVDVSKDRVDFQ---KLSESEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE + +F E +HS ++ +I+ +L D +F+ E I Sbjct: 90 RSPNIAFLPIISIPELETWTETWSFFETIHSRSYTHILRNLFGDPSSIFSDIVENEQIKK 149 Query: 158 KANWALQYTQTL----------------SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 +A +Y L + T + L E + F Sbjct: 150 RAADISKYYDDLIFYTQLWQTLGEGTHTINGEEHVVTMRTLKIKLFLCMNSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK----EF 257 Y FA + M G ++ + I RDE+LHL ++N E+ Sbjct: 210 YVSFACTFAFAERELMEGNSKIIRLISRDENLHLTSTQHILNLWAKGKDDPEMAEIALEY 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++++ + +A E +A G +GLN QY++FIAN R IGL+ F Sbjct: 270 KEEATNIFLDAVNQEKEWAEYLFQNGSMIGLNKDILCQYVEFIANHRMSAIGLDQPFDIK 329 Query: 317 ENPFPWMSEVIDLK 330 NP PWM+ ++ Sbjct: 330 NNPLPWMNNYLNSD 343 >gi|209551073|ref|YP_002282990.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536829|gb|ACI56764.1| Ribonucleoside-diphosphate reductase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 324 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 118/331 (35%), Gaps = 30/331 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ + + P L +F EAVH+ ++ I ++L + + Y Sbjct: 69 TLLDTIQNGVGAVGLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPD-VDDAY 127 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 R N LQ TL + G + V V E FY+GF + Sbjct: 128 RWSEE-----NEFLQRKSTLIIEQYRCGDPLKKK-------VASVFLESFLFYSGFYLPM 175 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 176 YWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEERKQEIKDFAFDLLLELY 235 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 E Y + ++++ + AN+ +G E LF NP + Sbjct: 236 DNEARYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALS 292 Query: 327 IDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 PNADENHDFFSGSGSSYVIGKAVATEDEDWD 323 >gi|229084444|ref|ZP_04216723.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-44] gi|228698872|gb|EEL51578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-44] Length = 322 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSREEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDSHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P ++ L V V E FY+GF L L K+ E Sbjct: 134 TGYYRRLLKPQ-------VAKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTDEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEEVNRFVRYNANKGLMNLGLEPRFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|238896131|ref|YP_002920867.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|238548449|dbj|BAH64800.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 333 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 68/354 (19%), Positives = 128/354 (36%), Gaps = 37/354 (10%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P + E R+ + + + N++ K W +N W+P +VP+ +D+ W Sbjct: 6 PARCKENRMTHLTRV---SAINWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAW 59 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 ++ L+ E+ + R +++ A+ P L +F EAVH+ Sbjct: 60 QT---LSAAEQQLTIRVFTGLTLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHA 116 Query: 129 HTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 ++ I ++L + F + KA L Y Q E L Sbjct: 117 RSYSSIFSTLCHSKEVDAAFAWSESCDPLQRKAQLMLGYYQA--------------DEPL 162 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + V E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 163 KKKI-ASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGL 221 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 +E + + +L + E+AY+ E + ++ + AN+ Sbjct: 222 EIVSPGKREELKNFALDLLMDLYDNELAYSRELYGESGW---FDDVSAFLCYNANKALMN 278 Query: 307 IGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 +G E LF NP + + + +FF + Y G A+ WD Sbjct: 279 LGYEALFPAEMAAVNPAILAALSPNADENHDFFSGSGSSYVIGKMEETADDDWD 332 >gi|30019505|ref|NP_831136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus ATCC 14579] gi|229043194|ref|ZP_04190917.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH676] gi|229078637|ref|ZP_04211194.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock4-2] gi|229108909|ref|ZP_04238513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-15] gi|229126769|ref|ZP_04255781.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-Cer4] gi|229144056|ref|ZP_04272472.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST24] gi|296502033|ref|YP_003663733.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis BMB171] gi|29895049|gb|AAP08337.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus ATCC 14579] gi|157955310|gb|ABW06026.1| NrdF [Bacillus thuringiensis serovar canadensis] gi|157955392|gb|ABW06088.1| NrdF [Bacillus thuringiensis serovar thompsoni] gi|157955396|gb|ABW06091.1| NrdF [Bacillus thuringiensis serovar tohokuensis] gi|228639453|gb|EEK95867.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST24] gi|228656709|gb|EEL12535.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-Cer4] gi|228674565|gb|EEL29805.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock1-15] gi|228704707|gb|EEL57136.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock4-2] gi|228726156|gb|EEL77390.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH676] gi|296323085|gb|ADH06013.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus thuringiensis BMB171] Length = 322 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|326782458|ref|YP_004322858.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2] gi|310003406|gb|ADO97803.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2] Length = 386 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 81/359 (22%), Positives = 143/359 (39%), Gaps = 28/359 (7%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 +++VN + M + V + KY W P EV +Q D A + Sbjct: 16 KEKVNTKKQPMFFGQPLGVQRYDTFKYPIFDRLTQQQLGYFWRPEEVSLQKDRADYAQ-- 73 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT ++R + NL + +S+ +A + S PE + F E +HS ++ Sbjct: 74 -LTPEQRHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMNVWEFMEMIHSRSYT 132 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT-------------- 178 YII ++ + ++F+ + I ++ + + + T Sbjct: 133 YIIKNVYSNPEDVFDTILDDEKIIDRSTSVTESYDDFINHAHQYDTGTMWELAKDGHYTG 192 Query: 179 ---KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 + + L + EG+ FY FA + G M G A+ I RDES HL Sbjct: 193 QYDRRELKRKLYRAVANVNILEGIRFYVSFACSFAFGELKLMEGSAKILSLIARDESQHL 252 Query: 236 NFGIDVINQIKI-ENPHLWTKEFQQK--SRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291 +++ + ++P + +++ M + E A+A G +GLN Sbjct: 253 VITQNILKNWRDGDDPEMQQIALEEEENVIKMFAKTVDEEKAWAEYLFKDGSMIGLNDRL 312 Query: 292 CEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347 QY+++IANRR IGL+P++ NP PW ++ K ++N ET + Y G Sbjct: 313 LSQYVEWIANRRMKAIGLKPMYNVPAKSNPLPWTEHWLNSKGQQNAPQETEIESYVIGG 371 >gi|71280050|ref|YP_269047.1| ribonucleotide-diphosphate reductase subunit beta [Colwellia psychrerythraea 34H] gi|71145790|gb|AAZ26263.1| ribonucleotide reductase, beta subunit [Colwellia psychrerythraea 34H] Length = 376 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 85/346 (24%), Positives = 143/346 (41%), Gaps = 37/346 (10%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62 NN L P+ G VNV +R D +Y + + W P EV + Sbjct: 11 NNALLEPMFLGNS-VNV-------SRYDQQ-----RYIAFEKLIEKQLSFFWRPEEVDVS 57 Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 D A W+S LTD E+ + NL + +S+ A ++ + +S PE ++ AF Sbjct: 58 KDRADWQS---LTDSEKHIFISNLKYQTLLDSMAARSVNAVLLPLVSLPEVETWVETWAF 114 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS-----SPSFTTG 177 E +HS ++ +I+ +L + GE+F+ P+I +A+ ++ + S G Sbjct: 115 SETIHSRSYTHILRNLFTEPGEIFDDIIVNPAILKRASSIAKFFDDVILTTQLLQSQGEG 174 Query: 178 TKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 T + + +E L E + FY FA + + G A+ + Sbjct: 175 TYEVEGKTVEVSTRKLKERLFLAVCSVNALEAIRFYVSFACSFAFAERELLEGNAKIIKL 234 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLEIAYAHETMPK 282 I RDE+LHL ++N + K ++ R + + E +A Sbjct: 235 IARDEALHLTGTQHILNNWRSGKDDPEMKIISEELRDEGLQIFLDVVEQEKEWAQYLFKD 294 Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 G +GLNA QY+++I+N+R IG F NP PWM+ + Sbjct: 295 GSMIGLNADILNQYIEYISNQRLTAIGFGAPFDIKSNPLPWMNAYL 340 >gi|75759355|ref|ZP_00739452.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896385|ref|YP_002444796.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9842] gi|228900033|ref|ZP_04064269.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] gi|228920164|ref|ZP_04083513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228964415|ref|ZP_04125529.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar sotto str. T04001] gi|74493187|gb|EAO56306.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|157955348|gb|ABW06055.1| NrdF [Bacillus thuringiensis serovar alesti] gi|157955356|gb|ABW06061.1| NrdF [Bacillus thuringiensis serovar dakota] gi|157955360|gb|ABW06064.1| NrdF [Bacillus thuringiensis serovar darmstadiensis] gi|157955364|gb|ABW06067.1| NrdF [Bacillus thuringiensis serovar dendrolimus] gi|157955380|gb|ABW06079.1| NrdF [Bacillus thuringiensis serovar ostriniae] gi|218545942|gb|ACK98336.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus G9842] gi|228795272|gb|EEM42764.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar sotto str. T04001] gi|228839620|gb|EEM84912.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228859647|gb|EEN04071.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] Length = 322 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TGYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|190896526|gb|ACE96776.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 223 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 26/246 (10%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 + + + E R + Q E + S + ++ + D E F+ VP + Sbjct: 1 AGRLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAK 60 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA WAL++ E + V + EG++F F I L + M Sbjct: 61 KAQWALRWIDG--------------SESFAERLVAFACVEGIFFSGSFCAIFWLKKRGLM 106 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 G+ + I RDE LH +F + + ++ K +++ + ++ +A +E + Sbjct: 107 PGLTFSNELISRDEGLHCDFACLLYSLLRK-------KLSEERVKGIVKDAVDIEREFVV 159 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 + +P VG+N QY++F+A+R +G ++ Y NPF M E+I L+ + NFFE Sbjct: 160 DALPCALVGMNGELMSQYIEFVADRLLGALGCGKVY-YVANPFDGM-ELISLQGKTNFFE 217 Query: 338 TRVTEY 343 RV EY Sbjct: 218 KRVGEY 223 >gi|323359290|ref|YP_004225686.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum StLB037] gi|323275661|dbj|BAJ75806.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum StLB037] Length = 324 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 57/330 (17%), Positives = 121/330 (36%), Gaps = 31/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W NN W+P +VP+ +D+ W + LT +E+ + R Sbjct: 15 NWNRIQDDKDLEVWN---RLVNNFWLPEKVPLSNDIQSWNT---LTPEEQTLTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ P AF E+VH+ ++ I ++L + E F Sbjct: 69 TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA + Y + + V + E FY+GF Sbjct: 129 WSTENEFLQKKARIVMDYYR---------------GDDPLKRKVASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + + + ++L+E Sbjct: 174 PMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLETVDQARRDDIKDYTFSLLYE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 E+ Y + ++++ + AN+ +G E +F + NP + Sbjct: 234 LYDNEVGYTQSLYDAVGLS---EDVKKFLHYNANKALMNLGYEAMFPSSVTNVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352 + + +FF + Y + + D Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAEATEDD 320 >gi|305681191|ref|ZP_07403998.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium matruchotii ATCC 14266] gi|305659396|gb|EFM48896.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium matruchotii ATCC 14266] Length = 330 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 67/333 (20%), Positives = 124/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P +VP+ +DL W + N L E+ R Sbjct: 21 NWNTIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLKSWSTLNEL---EKQTTMRVFTGL 74 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ L AF E+VH+ ++ I +L + E F Sbjct: 75 TLLDTIQGTVGAVSMLPDAVTLHEEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFR 134 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y D V + E FY+GF Sbjct: 135 WSEENENLQKKAKIILTYY---------------DGADPLKRKVASTLLESFLFYSGFYL 179 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q + +E ++ + +L+E Sbjct: 180 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKFQQALAKESPARQEELKEYTFDVLYE 239 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324 EIAY + +G ++++++ AN+ + +G E LF E P + Sbjct: 240 LYENEIAYTEDLY--DPLGWT-EDVKRFLRYNANKALNNLGYEALFPADECQVSPAILSA 296 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G + WD Sbjct: 297 LSPNADENHDFFSGSGSSYVIGKAENTTDEDWD 329 >gi|227494314|ref|ZP_03924630.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces coleocanis DSM 15436] gi|226832048|gb|EEH64431.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces coleocanis DSM 15436] Length = 322 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 64/344 (18%), Positives = 128/344 (37%), Gaps = 34/344 (9%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 +D + + + N+L K W+ N W+P ++P+ +D+ W + L +E Sbjct: 2 LDRGKHVFEAINWNKLEDDKDLEVWD---RLTGNFWLPEKIPLSNDIPSWNT---LRPEE 55 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + M + ++L +++ P L AF E+VH+ ++ I ++L Sbjct: 56 QDMTNKVFTNLTLLDTLQGTVGAISLISDARTPHEEAVLTNIAFMESVHARSYSSIFSTL 115 Query: 139 GLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 + E+F E + KA Y AD + + + Sbjct: 116 LSTQEINEVFRWSEENEQVQRKAEIVNSYY-------------VADDPLKKKV--ASTML 160 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 E FY+GF + K+ A+ + I+RDE++H + E+ +E Sbjct: 161 ESFLFYSGFYAPMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLGVRESSEARQQE 220 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + + +L+E E + + + ++++++ AN+ +G E LF Sbjct: 221 LKDYTFDLLYELYDNEEQFTEDLYDPLGL---TEDVKKFLRYNANKALMNLGYEALFPAE 277 Query: 317 E---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 NP S + + +FF + Y G + WD Sbjct: 278 SCDVNPAILASLSPNADENHDFFSGSGSSYVIGDIEDTQDEDWD 321 >gi|225021562|ref|ZP_03710754.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii ATCC 33806] gi|224945553|gb|EEG26762.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii ATCC 33806] Length = 330 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 67/333 (20%), Positives = 124/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P +VP+ +DL W + N L E+ R Sbjct: 21 NWNTIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLKSWSTLNDL---EKQTTMRVFTGL 74 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ L AF E+VH+ ++ I +L + E F Sbjct: 75 TLLDTIQGTVGAVSMLPDAVTLHEEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFR 134 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y D V + E FY+GF Sbjct: 135 WSEENENLQKKAKIILTYY---------------DGADPLKRKVASTLLESFLFYSGFYL 179 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q + +E ++ + +L+E Sbjct: 180 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKFQQALAKESPARQEELKEYTFDVLYE 239 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324 EIAY + +G ++++++ AN+ + +G E LF E P + Sbjct: 240 LYENEIAYTEDLY--DPLGWT-EDVKRFLRYNANKALNNLGYEALFPADECQVSPAILSA 296 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G + WD Sbjct: 297 LSPNADENHDFFSGSGSSYVIGKAENTTDEDWD 329 >gi|18158911|pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form gi|18158912|pdb|1KGN|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form gi|18158913|pdb|1KGN|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form gi|18158914|pdb|1KGN|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form gi|18158915|pdb|1KGO|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe Containing, Form gi|18158916|pdb|1KGO|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe Containing, Form gi|18158917|pdb|1KGO|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe Containing, Form gi|18158918|pdb|1KGO|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe Containing, Form gi|18158919|pdb|1KGP|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Mn Substituted Form gi|18158920|pdb|1KGP|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Mn Substituted Form gi|18158921|pdb|1KGP|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Mn Substituted Form gi|18158922|pdb|1KGP|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Mn Substituted Form gi|48425146|pdb|1OQU|A Chain A, A Protein Coordinated Tri-Nuclear Fe Complex Formed During Soaking Of Crystals Of The Ribonucleotide Reductase R2f Protein From Corynebacterium Ammoniagenes gi|48425147|pdb|1OQU|B Chain B, A Protein Coordinated Tri-Nuclear Fe Complex Formed During Soaking Of Crystals Of The Ribonucleotide Reductase R2f Protein From Corynebacterium Ammoniagenes gi|48425148|pdb|1OQU|C Chain C, A Protein Coordinated Tri-Nuclear Fe Complex Formed During Soaking Of Crystals Of The Ribonucleotide Reductase R2f Protein From Corynebacterium Ammoniagenes gi|48425149|pdb|1OQU|D Chain D, A Protein Coordinated Tri-Nuclear Fe Complex Formed During Soaking Of Crystals Of The Ribonucleotide Reductase R2f Protein From Corynebacterium Ammoniagenes gi|193506844|pdb|3DHZ|A Chain A, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein gi|193506845|pdb|3DHZ|B Chain B, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein gi|3077614|emb|CAA70766.1| ribonucleotide reductase subunit R2F [Corynebacterium ammoniagenes] Length = 329 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P ++P+ +D+ W N +T E+L R Sbjct: 20 NWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGL 73 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ AF E+VH+ ++ I +L E F Sbjct: 74 TLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFR 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA + Y D + + + E FY+GF Sbjct: 134 WSEENENLQRKAKIIMSYYN-------------GDDPLKKKV--ASTLLESFLFYSGFYL 178 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + L K+ A+ + I+RDES+H + Q + +E++ + ++++ Sbjct: 179 PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYD 238 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI Y + +G ++++++ AN+ + +G E LF E +P S Sbjct: 239 LYENEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSS 295 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G + WD Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDDDWD 328 >gi|260599071|ref|YP_003211642.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter turicensis z3032] gi|260218248|emb|CBA33173.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Cronobacter turicensis z3032] Length = 320 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 66/333 (19%), Positives = 120/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 11 NWNKLQDEKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTPGEQQLTIRVFTGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ A+ P L +F EAVH+ ++ I ++L D + Sbjct: 65 TLLDTIQNAVGAPALMADALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCQTPDVDAAYA 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L + + D + L+ V E FY+GF Sbjct: 125 WSEENAPLQRKAQIILAHYR--------------DDDPLKKKI-ASVFLESFLFYSGFYL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q + + + + ++ E Sbjct: 170 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQGLAQVDDARRESLKTFALDLMME 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 E+AY VG ++ + AN+ +G E LF NP + Sbjct: 230 LYDNELAYTEALYRD--VGW-VDDVSAFLCYNANKALMNLGYEALFPPEMAQVNPSILAA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + +FF + Y G + WD Sbjct: 287 LSPGADENHDFFSGSGSSYVMGKAVETEDADWD 319 >gi|327189837|gb|EGE56975.1| ribonucleoside-diphosphate reductase protein, beta subunit [Rhizobium etli CNPAF512] Length = 324 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 59/333 (17%), Positives = 117/333 (35%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRIEDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + + P L +F EAVH+ ++ I ++L D + + Sbjct: 69 TLLDTIQNGVGAIRLMEDAMTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ ++ + L+ V E FY+GF Sbjct: 129 WSEENEFLQRKSALIMEQY--------------GSGDPLKKKV-ASVFLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEERRQEIKDFAFDLLLE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + ++++ + AN+ +G E LF NP + Sbjct: 234 LYDNEARYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323 >gi|326781924|ref|YP_004322326.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2] gi|310003114|gb|ADO97512.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2] Length = 397 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 85/359 (23%), Positives = 142/359 (39%), Gaps = 28/359 (7%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 ++VN + M + V + KY + W P EV +Q D +++ Sbjct: 27 TEQVNTKKQPMFFGKPLGVQRYDSYKYPVFDKLTTQQLGYFWRPEEVSLQKDRGDYQT-- 84 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L +++ + NL + +S+ +A + S PE + F E +HS ++ Sbjct: 85 -LRPEQKHIYTSNLKYQIMLDSIQGRGPGMAFIPYCSLPELEACMEVWGFMEMIHSRSYT 143 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF------- 185 YII ++ D E+F+ I +A+ + GT + QE Sbjct: 144 YIIKNVYSDPSEVFDKIVTDDRILERASSVTASYDDFIRSAQQWGTGNMWQEDFRQSPSS 203 Query: 186 ----------LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 L + EG+ FY FA + G M G A+ I RDE+ HL Sbjct: 204 QWEIKDVKRKLYRAVANVNILEGIRFYVSFACSFAFGELKLMEGSAKIISLIARDENQHL 263 Query: 236 NFGIDVIN-QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291 +++N + ++P + KE ++ + A E +A G +GLN Sbjct: 264 AITQNILNKWAQGDDPEMKQIMKEEEEWTYKAFDNAVNEEKRWADYLFKDGSMIGLNDKL 323 Query: 292 CEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347 +QY++++ANRR IGL+P + + NP PW I K + ET V Y G Sbjct: 324 LQQYVEWVANRRLKAIGLKPQYDIAASANPLPWTQHWISSKGLQVAPQETEVESYVVGG 382 >gi|298345735|ref|YP_003718422.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 43063] gi|304390565|ref|ZP_07372518.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235796|gb|ADI66928.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 43063] gi|304326321|gb|EFL93566.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 322 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 117/321 (36%), Gaps = 26/321 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +D+ WK+ L +DE+ M R Sbjct: 13 NWNDIEDDKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLL 69 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150 +++ +++ P AF E+VH+ ++ + ++L E E F Sbjct: 70 DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEIKESFRWSE 129 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + KA+ L Y S V + E FY+GF + Sbjct: 130 ENEYLQKKAHIVLDYYHGNDSE---------------KRKVASTMLESFLFYSGFYAPMY 174 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + E+ +E + + ++L + Sbjct: 175 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAMRESSESRRQEMKDYTFSLLMDLYD 234 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E Y + ++++++ AN+ +G E LF + NP + Sbjct: 235 NEELYTETLYDPLGL---TEDVKKFLKYNANKALMNLGYEALFTADQVNVNPAILAALSP 291 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 + +FF + Y G Sbjct: 292 AADENHDFFSGSGSSYAIGTA 312 >gi|228990454|ref|ZP_04150419.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus pseudomycoides DSM 12442] gi|228996556|ref|ZP_04156195.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock3-17] gi|229004206|ref|ZP_04162007.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock1-4] gi|228757067|gb|EEM06311.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock1-4] gi|228763188|gb|EEM12096.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides Rock3-17] gi|228768980|gb|EEM17578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus pseudomycoides DSM 12442] Length = 322 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E+++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIVYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E E+F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFEWVDSHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P T ++ L V V E FY+GF L L K+ E Sbjct: 134 TGYYRRLLKPQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAEFSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPRFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|229160405|ref|ZP_04288403.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus R309803] gi|228623129|gb|EEK79957.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus R309803] Length = 322 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F + P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDKHPLLEKKAGIV 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + Q+ E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|227548647|ref|ZP_03978696.1| ribonucleoside-diphosphate reductase [Corynebacterium lipophiloflavum DSM 44291] gi|227079261|gb|EEI17224.1| ribonucleoside-diphosphate reductase [Corynebacterium lipophiloflavum DSM 44291] Length = 332 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P +VP+ +D+ W++ L D E+ R Sbjct: 23 NWNTIPDDKDLEVWD---RLTGNFWLPEKVPVSNDIPSWRT---LNDYEKTATMRVFTGL 76 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ AF E+VH+ ++ I +L + F Sbjct: 77 TLLDTIQGTVGAVSLLPDAKTMHEEAVYTNIAFMESVHAKSYSNIFMTLADTPAINDAFR 136 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E S+ KA L Y + D + + + E FY+GF Sbjct: 137 WSEENESLQRKAKIILSYY-------------EGDNPHKKKV--ASTLLESFLFYSGFYL 181 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + +K+ A+ + I+RDE++H + + + + E + + +L++ Sbjct: 182 PMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQRGQADLSQAERDELKDYTFNLLYD 241 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + +G ++++++ AN+ + +G E LF E +P S Sbjct: 242 LYENETQYTEDIY--DPLGWT-EDVKRFLRYNANKALNNLGYEGLFPQDETKVSPAILAS 298 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 299 LSPNADENHDFFSGSGSSYVIGKAEDTQDDDWD 331 >gi|157955305|gb|ABW06022.1| NrdF [Bacillus thuringiensis serovar aizawai] gi|157955352|gb|ABW06058.1| NrdF [Bacillus thuringiensis serovar colmeri] gi|157955372|gb|ABW06073.1| NrdF [Bacillus thuringiensis serovar indiana] gi|157955405|gb|ABW06098.1| NrdF [Bacillus thuringiensis serovar wuhanensis] Length = 322 Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|315654326|ref|ZP_07907234.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 51333] gi|315657771|ref|ZP_07910651.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491361|gb|EFU80978.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii ATCC 51333] gi|315491568|gb|EFU81179.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 322 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 58/321 (18%), Positives = 117/321 (36%), Gaps = 26/321 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P ++P+ +D+ WK+ L +DE+ M R Sbjct: 13 NWNDIEDDKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLL 69 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150 +++ +++ P AF E+VH+ ++ + ++L E E F Sbjct: 70 DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEINESFRWSE 129 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + KA+ L Y + V + E FY+GF + Sbjct: 130 ENEYLQKKAHIVLDYYH---------------GNDPEKRKVASTMLESFLFYSGFYAPMY 174 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + E+ +E + + ++L + Sbjct: 175 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAMRESSESRRQEMKDYTFSLLMDLYD 234 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327 E Y + ++++++ AN+ +G E LF + NP + Sbjct: 235 NEELYTETLYDPLGL---TEDVKKFLKYNANKALMNLGYEALFTADQVNVNPAILAALSP 291 Query: 328 DLKKEKNFFETRVTEYQQGAE 348 + +FF + Y G Sbjct: 292 AADENHDFFSGSGSSYAIGTA 312 >gi|227502986|ref|ZP_03933035.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC 49725] gi|306836783|ref|ZP_07469743.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium accolens ATCC 49726] gi|227076047|gb|EEI14010.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC 49725] gi|304567329|gb|EFM42934.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium accolens ATCC 49726] Length = 329 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K WE N W+P +VP+ +DL WK+ LT+ E+ R Sbjct: 20 NWNNIPDDKDLEVWE---RLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGL 73 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ AF E+VH+ ++ I +L + F Sbjct: 74 TLLDTIQGTVGAISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y D + + + E FY+GF Sbjct: 134 WSEENENLQKKAKIILSYYN-------------GDDPLKKKV--ASTLLESFLFYSGFYL 178 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q + +E + + + E Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQEYKKLDEKRQEELKDYTFDLAFE 238 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI Y + + +G ++++++ AN+ + +G E LF E +P S Sbjct: 239 LYDNEIDYTEDLYDE--LGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G + WD Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDDDWD 328 >gi|326782198|ref|YP_004322599.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1] gi|310004405|gb|ADO98798.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1] Length = 395 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 85/359 (23%), Positives = 142/359 (39%), Gaps = 28/359 (7%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + V+ + M + + + KY + W P EV +Q D + +K+ Sbjct: 25 KNHVDTKKQPMFFGQPLGMQRYDEFKYPVFDKLTTQQLGYFWRPEEVSLQKDRSDYKT-- 82 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT +++ + NL + +S+ +A + S PE + E +HS ++ Sbjct: 83 -LTPEQKHIYTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNVWQLMEMIHSRSYT 141 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT---------------G 177 YII ++ D E+F+ + I ++A L + G Sbjct: 142 YIIKNVYPDASEVFDTVLDDDKIMSRAESVTAAYDELINAEHEFDSGNAWKFAAEGHPAG 201 Query: 178 TKDAD--QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 T D + L + + EG+ FY FA + G M G A+ I RDES HL Sbjct: 202 TYDRKELKRKLYRAVLNVNILEGIRFYVSFACSFAFGELKVMEGSAKIISLIARDESQHL 261 Query: 236 NFGIDVINQIKIENPHLW---TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291 +I + + + +E + M A E A+A G +GLN Sbjct: 262 VLTQQIIKKWQDGDDEEMVRIAEEEKSNVLKMFKNAVEEEKAWASYLFKNGSMIGLNEKL 321 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347 QY++F ANRR IGL+P++ + NP PW ++ K ++N ET + Y G Sbjct: 322 LGQYVEFTANRRMKAIGLDPIYDISPRNNPLPWTQYWLNSKGQQNAPQETEIESYVIGG 380 >gi|229102053|ref|ZP_04232765.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-28] gi|228681373|gb|EEL35538.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus Rock3-28] Length = 322 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 +Y + L P T ++ L V V E FY+GF L L K+ E Sbjct: 134 TRYYRRLLKPQVT-------KKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + Q+ E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFAELSAEDQQEVQKETQVLLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VDDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|293394770|ref|ZP_06639061.1| ribonucleotide-diphosphate reductase subunit beta [Serratia odorifera DSM 4582] gi|291422721|gb|EFE95959.1| ribonucleotide-diphosphate reductase subunit beta [Serratia odorifera DSM 4582] Length = 319 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 60/326 (18%), Positives = 123/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W + LT E+ + R Sbjct: 10 NWNRIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWAT---LTAKEQQLTIRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + P +F EAVH+ ++ I ++L D + + Sbjct: 64 TLLDTIQNTVGAPTLIDDAITPHEEAVYSNISFMEAVHARSYSSIFSTLCQTRDVDDAYR 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA+ L + ++ D L+ + V E FY+GF Sbjct: 124 WSEENRALQKKADIILAHYRS-------------DDPLLKKV--ASVFLESFLFYSGFYL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + ++ + + +L + Sbjct: 169 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEQVSATRRQQVKSFAFDLLQD 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 E+ Y E VG + ++ + AN+ +G E LF + NP + Sbjct: 229 LYDNEVRYTEELYDD--VGWT-EDVKTFLHYNANKALMNLGYEALFPPSMAEVNPAILSA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G + Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVN 311 >gi|229057079|ref|ZP_04196471.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH603] gi|228720220|gb|EEL71799.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH603] Length = 322 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 127/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q +++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFTELSAKEQQEVQTETQELLMELYEIELAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|146312797|ref|YP_001177871.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp. 638] gi|145319673|gb|ABP61820.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Enterobacter sp. 638] Length = 319 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 59/330 (17%), Positives = 121/330 (36%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ + A+ P + +F EAVH+ ++ I ++L D ++ Sbjct: 67 DTIQNSVGAPALMGDSLTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 S+ KA L+Y + L+ V E FY+GF + Sbjct: 127 ASTSLQRKAQLVLEYYHA--------------DDPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L + Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKISEAKREELKGFALDLLMDLYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 E++Y E + ++ + AN+ +G E LF NP + Sbjct: 232 NELSYTEELYAGTSWET---DVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 289 NADENHDFFSGSGSSYVMGKAVETEDADWD 318 >gi|213965886|ref|ZP_03394077.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] gi|213951464|gb|EEB62855.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] Length = 338 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 63/354 (17%), Positives = 125/354 (35%), Gaps = 34/354 (9%) Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 P + N + + A D N + K W+ N W+P +VP+ +D+ W Sbjct: 8 PSTPAHREKNPESRACPVAAIDWNTIPDDKDLEVWD---RLTGNFWLPEKVPLSNDIKSW 64 Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 + N L E+ R +++ +++ P AF E+VH+ Sbjct: 65 NTLNAL---EQRTTMRVFTGLTMLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHA 121 Query: 129 HTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 ++ I +L + F E + KA L Y + D Sbjct: 122 KSYSSIFQTLASTPEIQDAFRWGEENEYLQKKAKIILDYY-------------EGDNPQK 168 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 169 KKV--ASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQRNL 226 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 E + + ++ + EI Y E + +G ++++++ N+ + Sbjct: 227 ERLTQAERDELKDYTFDLMFDLYDNEIQYTEEMYDE--LGWT-EDVKRFLRYNGNKALNN 283 Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 +G E +F E +P + + + +FF + Y G WD Sbjct: 284 LGYEGMFPADETRVSPSILSALSPNADENHDFFSGSGSSYVMGKAEVTQDEDWD 337 >gi|311113720|ref|YP_003984942.1| ribonucleotide-diphosphate reductase subunit beta [Rothia dentocariosa ATCC 17931] gi|310945214|gb|ADP41508.1| ribonucleotide-diphosphate reductase subunit beta [Rothia dentocariosa ATCC 17931] Length = 325 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 127/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ WK+ LT +E+ + R Sbjct: 16 NWNRLEDDKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT---LTAEEKELTMRVFTGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ +++ AF E+VH+ ++ I ++L + + F Sbjct: 70 TLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLSSTKEIDDAFR 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L Y + V + E FY+GF Sbjct: 130 WASENEHLQKKAKIILAYY---------------TGDDPLKKKVASTLLESFLFYSGFYL 174 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + E ++ + +L+E Sbjct: 175 PMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKESPERQAELKEYTFNLLYE 234 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEV 326 E++Y H VG + ++++ + AN+ +G E +F + N P + Sbjct: 235 LYENEVSYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEAMFPASVTNVSPAILSA 291 Query: 327 I--DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + + +FF + Y G + WD Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324 >gi|255026984|ref|ZP_05298970.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J2-003] Length = 336 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 72/315 (22%), Positives = 137/315 (43%), Gaps = 18/315 (5%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + R P+I + + + + E L + + EG+ FY+ Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GFA +L R NKM G + +I RDE H F +VI I ENP L T+E + + Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHE 255 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322 A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N W Sbjct: 256 AFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTW 314 Query: 323 MSEVID--LKKEKNF 335 + D + + +F Sbjct: 315 IKAYADNFTETKTDF 329 >gi|163939261|ref|YP_001644145.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus weihenstephanensis KBAB4] gi|229010750|ref|ZP_04167947.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides DSM 2048] gi|229132251|ref|ZP_04261107.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST196] gi|229166287|ref|ZP_04294046.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH621] gi|163861458|gb|ABY42517.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis KBAB4] gi|228617232|gb|EEK74298.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus AH621] gi|228651189|gb|EEL07168.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST196] gi|228750424|gb|EEM00253.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides DSM 2048] Length = 322 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 127/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q +++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFTELSAEEQQEVQTETQELLMELYEIELAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|42780545|ref|NP_977792.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus ATCC 10987] gi|42736465|gb|AAS40400.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus ATCC 10987] Length = 322 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|308172806|ref|YP_003919511.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus amyloliquefaciens DSM 7] gi|307605670|emb|CBI42041.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus amyloliquefaciens DSM 7] Length = 327 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 65/308 (21%), Positives = 118/308 (38%), Gaps = 20/308 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L E+ R L ++ N + I Sbjct: 24 FYAQNVKQFWLPEEISLNGDLLSWK---ALGPAEQTTYMRGLAGLTLLDTEQGNTGMPII 80 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 +H++ + + L A E VH+ ++ I +L E E+F + P + KA Sbjct: 81 AKHIAGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKTNPYLQRKAAL 140 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + K+ D L V V E FY+GF L K+ Sbjct: 141 ITGLYRDI---------KEGDAISLYKALVASVYLESFLFYSGFYYPLYFAGQGKLTSSG 191 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E I+RDE++H + + +I + E + + +L E E+AY + Sbjct: 192 EIINLIIRDEAIHGVYVGLLAQEIYGKQDPDVQLEMRDFAVELLTELYDNEVAYTEDLYD 251 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEKNFFETRV 340 + ++++++ AN+ +G +P F + NP M+ + K +FF + Sbjct: 252 AVGL---THDVKRFLRYNANKALQNLGFDPYFEEERPNPIV-MNGLNTKTKSHDFFSQKG 307 Query: 341 TEYQQGAE 348 Y++ Sbjct: 308 NGYKKATV 315 >gi|85711601|ref|ZP_01042658.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina baltica OS145] gi|85694461|gb|EAQ32402.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina baltica OS145] Length = 377 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 126/312 (40%), Gaps = 25/312 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + + W P EV + D + N LT E+ + NL + +S+ Sbjct: 33 KHSIFEKLIEKQISFFWRPEEVDVSRDRVDF---NKLTASEKHVFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +I+ +L D E+F I Sbjct: 90 RSPNIALLPIVSLPELETWIETWSFFETIHSRSYTHILRNLFSDPSEIFEDIVINDQIKL 149 Query: 158 KANWALQYTQTLS----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 +AN +Y L T+ ++ L E + F Sbjct: 150 RANDISRYYDDLIFYTQLWQTHGEGKITVDGEEHNVTRRELKKKLFLCINSVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257 Y FA + M G A+ + I RDE++HL +IN + ++P + +E Sbjct: 210 YVSFACTFAFAERELMEGNAKIIRLIARDENVHLTSTQHMINLWQDGEDDPEMAEIAEEL 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY- 315 ++ + A E +AH G +GLN QY+++IAN R IG + F Sbjct: 270 ADEAYEIFMTAVKQEKQWAHYLFRDGSMIGLNESMLCQYVEYIANLRMQAIGYDAPFPEQ 329 Query: 316 TENPFPWMSEVI 327 NP PWM++ + Sbjct: 330 RSNPLPWMNKYL 341 >gi|319441868|ref|ZP_07991024.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium variabile DSM 44702] Length = 332 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 121/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P +VP+ +D+ W + L++ E+ R Sbjct: 23 NWNTIPDDKDLEVWD---RLTGNFWLPEKVPLSNDIKSWGT---LSEAEQTATMRVFTGL 76 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ ++ P AF E+VH+ ++ I +L + F Sbjct: 77 TMLDTIQGTVGATSLIDDAVTPHEEAVFTNIAFMESVHAKSYSSIFMTLASTPQINDAFR 136 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA+ L + Q D + + + E FY+GF Sbjct: 137 WSEENENLQTKADIVLNFYQ-------------GDDPLKKKV--ASTLLESFLFYSGFYL 181 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + ++ + Sbjct: 182 PMYWSSHAKLTNTADVIRLIIRDEAVHGYYIGYKYQRALEHETEARRQELKDHTFELVFD 241 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + +G ++++++ AN+ + +G E LF E +P + Sbjct: 242 LYDNECQYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPVDETRVSPSIISA 298 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + +FF + Y G + WD Sbjct: 299 LNPGGDENHDFFSGSGSSYVIGKAENTVDDDWD 331 >gi|121602770|ref|YP_988676.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella bacilliformis KC583] gi|120614947|gb|ABM45548.1| ribonucleoside-diphosphate reductase, beta subunit [Bartonella bacilliformis KC583] Length = 324 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 62/325 (19%), Positives = 121/325 (37%), Gaps = 29/325 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W N W+P +VP+ +D+ W+S LT++E+ + R Sbjct: 15 NWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWES---LTEEEKKLTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ L AF EAVH+ ++ I ++L L D + F Sbjct: 69 TLLDTVQNTVGAVSLMADAVTEHEEAVLTNIAFMEAVHARSYSSIFSTLCLTVDVDDAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L++ + + L+ E FY+GF Sbjct: 129 WSEENVYLQKKAKLVLEHYEA--------------NDPLKKKI-ASTFLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + ML + Sbjct: 174 PMYWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLGFAKLNEAQKQEMKDFTFNMLFD 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324 +E Y + + + ++ + AN+ +G E LF NP + Sbjct: 234 LYNIECKYTEDLYDSLGL---TEDVKVFLHYNANKALMNLGFESLFPSEVCRVNPAILAA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349 + + +FF + Y G + Sbjct: 291 LSPNSDENHDFFSGSGSSYVIGKAV 315 >gi|218690804|ref|YP_002399016.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli ED1a] gi|218428368|emb|CAR09297.2| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli ED1a] Length = 319 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 61/326 (18%), Positives = 123/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + + + ++ + AN+ +G EPLF NP + + Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAIFAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|37525251|ref|NP_928595.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784678|emb|CAE13578.1| ribonucleoside-diphosphate reductase 2 beta chain (ribonucleotide reductase 2) (R2f protein) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 319 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 64/329 (19%), Positives = 123/329 (37%), Gaps = 29/329 (8%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 + N++ K W N W+P ++P+ +D+ W + LT +E+ + R Sbjct: 7 CAINWNRIEDDKDLEVWN---RLTTNFWLPEKIPLSNDITSWNT---LTTEEKKLTIRVF 60 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGE 144 +++ A+ P + +F EAVH+ ++ I ++L L D + Sbjct: 61 TGLTLLDTIQNTVGAPALMEDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDD 120 Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 + + S+ KA L Y + V E FY+G Sbjct: 121 AYRWSEKSFSLQNKAKIILNYY---------------SYHHPLKKKIASVFLESFLFYSG 165 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 F + + A+ + I+RDE++H + Q ++ L KE ++ + ++ Sbjct: 166 FYLPMYWSSRGILTNTADLIRLIIRDEAIHGYYIGYKFQQSLKKHSTLEQKEIKEFTFSL 225 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321 L E EI Y E VG ++++ + AN+ +G E LF +P Sbjct: 226 LLELYENEIKYTEELY--DIVGWT-EDIKKFLHYNANKALMNLGYETLFPPEITNVSPTI 282 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + + + +FF + Y G + Sbjct: 283 LSALSPNANENHDFFSGSGSSYVIGKAVN 311 >gi|157955336|gb|ABW06046.1| NrdF [Bacillus thuringiensis serovar kurstaki] Length = 322 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 130/309 (42%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E + +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELSEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|225686158|ref|YP_002734130.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis ATCC 23457] gi|256043236|ref|ZP_05446173.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|256262715|ref|ZP_05465247.1| ribonucleotide reductase [Brucella melitensis bv. 2 str. 63/9] gi|260564448|ref|ZP_05834933.1| ribonucleotide reductase [Brucella melitensis bv. 1 str. 16M] gi|265989661|ref|ZP_06102218.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|225642263|gb|ACO02176.1| Ribonucleoside-diphosphate reductase [Brucella melitensis ATCC 23457] gi|260152091|gb|EEW87184.1| ribonucleotide reductase [Brucella melitensis bv. 1 str. 16M] gi|263000330|gb|EEZ13020.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|263092503|gb|EEZ16756.1| ribonucleotide reductase [Brucella melitensis bv. 2 str. 63/9] gi|326410495|gb|ADZ67559.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis M28] gi|326553787|gb|ADZ88426.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis M5-90] Length = 329 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 60/344 (17%), Positives = 120/344 (34%), Gaps = 35/344 (10%) Query: 17 VNVDDKRMLNARS------DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +N+ K R + N++ K W N W+P +VP+ +D+ W++ Sbjct: 1 MNMQHKTATKGRPASVRAINWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET 57 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L E+ + R +++ + + P L +F EAVH+ + Sbjct: 58 ---LKPQEKQLTTRVFTGLTLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARS 114 Query: 131 FQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 + I ++L L + + E + K+ L + L+ Sbjct: 115 YSSIFSTLCLTPDVDDAYRWSEENEFLQRKSTLILDQYHA--------------DDPLKK 160 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 161 KI-ASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEV 219 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 +E + + +L E E+ Y + ++++ + AN+ +G Sbjct: 220 LSEEKRQEIKDFAFELLLELYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLG 276 Query: 309 LEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 E LF NP + + + +FF + Y G + Sbjct: 277 YEALFPAEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAV 320 >gi|283786769|ref|YP_003366634.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter rodentium ICC168] gi|282950223|emb|CBG89859.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter rodentium ICC168] Length = 319 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 63/332 (18%), Positives = 122/332 (36%), Gaps = 26/332 (7%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M +R ++ E + +N W+P +VP+ +D+ W+S L E+ + Sbjct: 1 MTLSRVSAINWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQS---LNAAEQQLTI 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LD 141 R +++ ++ P L +F EAVH+ ++ I ++L D Sbjct: 58 RVFTGLTLLDTIQNIAGAPSLMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTRD 117 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E + KA L + A E L+ V E F Sbjct: 118 VDAAYAWSEENAPLQRKAQIILAHY--------------ASDEPLKKKI-ASVFLESFLF 162 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF + K+ A+ + I+RDE++H + + + P ++ + + Sbjct: 163 YSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGMEKLPDAAREDLKNFA 222 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTEN 318 +L E E+ Y E +A + ++ + AN+ +G E LF N Sbjct: 223 LDLLMELYDNEVRYTEELYAD---TGHAEDVQAFLCYNANKAMMNLGYEALFPAEMAEVN 279 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 P + + + +FF + Y G ++ Sbjct: 280 PAILAALSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|330013348|ref|ZP_08307619.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] gi|328533536|gb|EGF60259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] Length = 320 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 121/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 11 NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ A+ P L +F EAVH+ ++ I ++L + F Sbjct: 65 TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA L Y Q E L+ V E FY+GF Sbjct: 125 WSESCDPLQCKAQLMLGYYQA--------------DEPLKKKI-ASVFLESFLFYSGFWL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L + Sbjct: 170 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+AY+ E + ++ + AN+ +G E LF NP + Sbjct: 230 LYDNELAYSRELYGESGW---FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G A+ WD Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKMEETADDDWD 319 >gi|319899230|ref|YP_004159323.1| ribonucleoside-diphosphate reductase beta chain [Bartonella clarridgeiae 73] gi|319403194|emb|CBI76753.1| ribonucleoside-diphosphate reductase beta chain [Bartonella clarridgeiae 73] Length = 324 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 62/325 (19%), Positives = 118/325 (36%), Gaps = 29/325 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W N W+P +VP+ +D+ W S LT++ER + R Sbjct: 15 NWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ L AF EAVH+ ++ I ++L + + F Sbjct: 69 TLLDTVQNTVGAISLMADAVTEHEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L++ + E L+ + E FY+GF Sbjct: 129 WSEENTYLQKKARLILEHYEA--------------NEPLKKKI-ASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + +E + + ML + Sbjct: 174 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFANLDKAKRQEIKDFAFNMLFD 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324 +E Y + + ++ + AN+ +G E LF NP + Sbjct: 234 LYNIECKYTENLYDSIGL---TEDVKVFLHYNANKALMNLGFEALFPPEVCRVNPAILAA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349 + + +FF + Y G + Sbjct: 291 LSPNSDENHDFFSGSGSSYVIGKAV 315 >gi|163867489|ref|YP_001608688.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella tribocorum CIP 105476] gi|161017135|emb|CAK00693.1| ribonucleoside-diphosphate reductase beta chain [Bartonella tribocorum CIP 105476] Length = 324 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 123/343 (35%), Gaps = 31/343 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + K + + + N+L K W N W+P +VP+ +D+ W S LT+ Sbjct: 2 TKITTKNPIVSAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWSS---LTE 55 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 +ER + R +++ +++ L AF EAVH+ ++ I + Sbjct: 56 EERKLTIRVFTGLTLLDTIQNTVGAISLLADAITEHEEAVLTNIAFMEAVHARSYSSIFS 115 Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 +L + + F E + KA L+ + + L+ Sbjct: 116 TLCSTVEVDDAFRWSEENSHLQKKARLVLERYEA--------------NDPLKKKI-AST 160 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 161 LLESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGYAKLEEAKR 220 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 +E + + +L + +E Y + + + ++ + AN+ +G E LF Sbjct: 221 QEVKDFAFNLLFDLYNIECKYTEDLYDSLGL---TEDVKIFLHYNANKALMNLGFEALFP 277 Query: 315 YT---ENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352 NP S + + +FF + Y + D Sbjct: 278 PEVCHVNPAILASLSPNSDENHDFFSGAGSSYVIGKAVATTDD 320 >gi|300718018|ref|YP_003742821.1| ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia billingiae Eb661] gi|299063854|emb|CAX60974.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia billingiae Eb661] Length = 319 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 119/326 (36%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + NQ+ K W +N W+P +VP+ +D+ W N L DE+ + R Sbjct: 10 NWNQIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAW---NSLNADEQQLTIRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ A+ P + +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTIQNTVGAPALMADAVTPHEEAVMSNVSFMEAVHARSYSSIFSTLCHTTDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + + KA L++ + + V E FY+GF Sbjct: 124 WSEDNQPLQRKAEIILEHYH---------------HDDPLKKKIASVFLESFLFYSGFYL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I++DE++H + + + E QQ + +L Sbjct: 169 PMYWSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKESPARKDELQQFAVELLLA 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324 E+AY VG + ++++ + AN+ +G E LF NP + Sbjct: 229 LYENELAYTEALYDG--VGWS-EEVKKFLHYNANKALMNLGYEALFPAEMTDVNPAILSA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G + Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVD 311 >gi|31793160|ref|NP_855653.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis AF2122/97] gi|224990358|ref|YP_002645045.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|260205258|ref|ZP_05772749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis K85] gi|289574653|ref|ZP_06454880.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis K85] gi|31618751|emb|CAD94705.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium bovis AF2122/97] gi|224773471|dbj|BAH26277.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|289539084|gb|EFD43662.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis K85] Length = 322 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 128/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+LL K WE N W+P ++P+ +DLA W++ L+ E+ R Sbjct: 13 NWNRLLDAKDLQVWE---RLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGL 66 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++ A +A+ P L AF E+VH+ ++ I ++L + + F+ Sbjct: 67 TLLDTAQATVGAVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFD 126 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + P + KA + Y + + V+ E FY+GF Sbjct: 127 WSEQNPYLQRKAQIIVDYYR---------------GDDALKRKASSVMLESFLFYSGFYL 171 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + + ++ + +LH Sbjct: 172 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHT 231 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI YAH+ + +G YM++ AN+ +G +P F NP + Sbjct: 232 LYANEIDYAHDLYDE--LGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAA 288 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + +FF + Y G + WD Sbjct: 289 LDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 321 >gi|15841457|ref|NP_336494.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CDC1551] gi|57116932|ref|YP_177853.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Rv] gi|148661790|ref|YP_001283313.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|148823195|ref|YP_001287949.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis F11] gi|167970496|ref|ZP_02552773.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|215404217|ref|ZP_03416398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|215411671|ref|ZP_03420467.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|215427336|ref|ZP_03425255.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T92] gi|215430897|ref|ZP_03428816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|215446189|ref|ZP_03432941.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|218753694|ref|ZP_03532490.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis GM 1503] gi|219557941|ref|ZP_03537017.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T17] gi|253798971|ref|YP_003031972.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 1435] gi|254232151|ref|ZP_04925478.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis C] gi|254364798|ref|ZP_04980844.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis str. Haarlem] gi|254551002|ref|ZP_05141449.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186953|ref|ZP_05764427.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CPHL_A] gi|260201080|ref|ZP_05768571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T46] gi|289443470|ref|ZP_06433214.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289447597|ref|ZP_06437341.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis CPHL_A] gi|289554242|ref|ZP_06443452.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 605] gi|289570077|ref|ZP_06450304.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T17] gi|289746076|ref|ZP_06505454.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289750559|ref|ZP_06509937.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T92] gi|289754082|ref|ZP_06513460.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289758093|ref|ZP_06517471.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|289762136|ref|ZP_06521514.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis GM 1503] gi|294996911|ref|ZP_06802602.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 210] gi|297634550|ref|ZP_06952330.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN 4207] gi|297731538|ref|ZP_06960656.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN R506] gi|298525478|ref|ZP_07012887.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|306776213|ref|ZP_07414550.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu001] gi|306779994|ref|ZP_07418331.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu002] gi|306784744|ref|ZP_07423066.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu003] gi|306789101|ref|ZP_07427423.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu004] gi|306793436|ref|ZP_07431738.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu005] gi|306797819|ref|ZP_07436121.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu006] gi|306803700|ref|ZP_07440368.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu008] gi|306808274|ref|ZP_07444942.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu007] gi|306968097|ref|ZP_07480758.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu009] gi|306972322|ref|ZP_07484983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu010] gi|307080033|ref|ZP_07489203.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu011] gi|307084607|ref|ZP_07493720.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu012] gi|313658871|ref|ZP_07815751.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN V2475] gi|1710397|sp|Q10840|RIR2A_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta nrdF1; AltName: Full=Ribonucleotide reductase R2-1 small subunit; AltName: Full=Ribonucleotide reductase small subunit 1 gi|13881697|gb|AAK46308.1| ribonucleoside-diphosphate reductase R2-1, beta subunit [Mycobacterium tuberculosis CDC1551] gi|38490297|emb|CAE55444.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1 (RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|124601210|gb|EAY60220.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis C] gi|134150312|gb|EBA42357.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis str. Haarlem] gi|148505942|gb|ABQ73751.1| ribonucleoside-diphosphate reductase subunit beta NrdF1 [Mycobacterium tuberculosis H37Ra] gi|148721722|gb|ABR06347.1| ribonucleoside-diphosphate reductase beta subunit nrdF1 [Mycobacterium tuberculosis F11] gi|253320474|gb|ACT25077.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 1435] gi|289416389|gb|EFD13629.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium tuberculosis T46] gi|289420555|gb|EFD17756.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis CPHL_A] gi|289438874|gb|EFD21367.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 605] gi|289543831|gb|EFD47479.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T17] gi|289686604|gb|EFD54092.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289691146|gb|EFD58575.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis T92] gi|289694669|gb|EFD62098.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289709642|gb|EFD73658.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1 [Mycobacterium tuberculosis GM 1503] gi|289713657|gb|EFD77669.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|298495272|gb|EFI30566.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|308215325|gb|EFO74724.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu001] gi|308327098|gb|EFP15949.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu002] gi|308330477|gb|EFP19328.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu003] gi|308334311|gb|EFP23162.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu004] gi|308338113|gb|EFP26964.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu005] gi|308341805|gb|EFP30656.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu006] gi|308345291|gb|EFP34142.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu007] gi|308349595|gb|EFP38446.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu008] gi|308354222|gb|EFP43073.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu009] gi|308358200|gb|EFP47051.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu010] gi|308362132|gb|EFP50983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu011] gi|308365786|gb|EFP54637.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis SUMu012] gi|323719468|gb|EGB28595.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis CDC1551A] gi|326903590|gb|EGE50523.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis W-148] gi|328458726|gb|AEB04149.1| ribonucleoside-diphosphate reductase subunit beta nrdF1 [Mycobacterium tuberculosis KZN 4207] Length = 322 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 128/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+LL K WE N W+P ++P+ +DLA W++ L+ E+ R Sbjct: 13 NWNRLLDAKDLQVWE---RLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGL 66 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++ A +A+ P L AF E+VH+ ++ I ++L + + F+ Sbjct: 67 TLLDTAQATVGAVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFD 126 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + P + KA + Y + + V+ E FY+GF Sbjct: 127 WSEQNPYLQRKAQIIVDYYR---------------GDDALKRKASSVMLESFLFYSGFYL 171 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + + ++ + +LH Sbjct: 172 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHT 231 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI YAH+ + +G YM++ AN+ +G +P F NP + Sbjct: 232 LYANEIDYAHDLYDE--LGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAA 288 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + +FF + Y G + WD Sbjct: 289 LDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 321 >gi|222102712|ref|YP_002539751.1| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium vitis S4] gi|221739313|gb|ACM40046.1| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium vitis S4] Length = 329 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 118/333 (35%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W L +E+ + R Sbjct: 20 NWNRINDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWA---ALKPEEQQLTIRVFTGL 73 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + + P +F EAVH+ ++ I ++L D + + Sbjct: 74 TLLDTIQTSIGAPTLMEDSITPHEEAVYSNISFMEAVHARSYSSIFSTLCSTSDVDDAYR 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ L++ + + + L+ V E FY+GF Sbjct: 134 WSEENEFLQKKSALILEHYR--------------NPDPLKRKI-ASVFLESFLFYSGFYL 178 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + ++ A+ + I+RDE++H + + +E + + +L E Sbjct: 179 PMFWSSRARLTNTADMIRLIIRDEAVHGYYIGYKFQRGLEPLSEEQRQETKDFAFDLLLE 238 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + ++++ + AN+ +G E LF NP + Sbjct: 239 LYDNEAKYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPPEACKVNPAILSA 295 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 328 >gi|218663032|ref|ZP_03518962.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli IE4771] Length = 324 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 117/333 (35%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + W N W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRIEDDRDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + + P L +F EAVH+ ++ I ++L D + + Sbjct: 69 TLLDTIQNGVGSIRLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ ++ + L+ V E FY+GF Sbjct: 129 WSEENEFLQRKSVLIMEQY--------------GSGDPLKKKI-ASVFLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEERRQEIKDFAFDLLLE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + ++++ + AN+ +G E LF NP + Sbjct: 234 LYDNEARYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323 >gi|325496274|gb|EGC94133.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia fergusonii ECD227] Length = 319 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDNPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLGKTSLEQREELKNFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|256015100|ref|YP_003105109.1| ribonucleotide-diphosphate reductase beta subunit [Brucella microti CCM 4915] gi|255997760|gb|ACU49447.1| ribonucleotide-diphosphate reductase beta subunit [Brucella microti CCM 4915] Length = 329 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 29/325 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W++ L E+ + R Sbjct: 20 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 73 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ + + P L +F EAVH+ ++ I ++L L + + Sbjct: 74 TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ L + L+ V E FY+GF Sbjct: 134 WSEENEFLQRKSTLILDQYHA--------------DDPLKKKI-ASVFLESFLFYSGFYL 178 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 179 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGHKFQRALEVLSEEKRQEIKDFAFELLLE 238 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + ++++ + AN+ +G E LF NP + Sbjct: 239 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 295 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349 + + +FF + Y G + Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAV 320 >gi|288933942|ref|YP_003438001.1| ribonucleoside-diphosphate reductase [Klebsiella variicola At-22] gi|290510980|ref|ZP_06550349.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. 1_1_55] gi|288888671|gb|ADC56989.1| Ribonucleoside-diphosphate reductase [Klebsiella variicola At-22] gi|289775973|gb|EFD83972.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. 1_1_55] Length = 320 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 121/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 11 NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ A+ P L +F EAVH+ ++ I ++L + F Sbjct: 65 TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA L Y Q E L+ V E FY+GF Sbjct: 125 WSESCEPLQRKAQLMLGYYQA--------------DEPLKKKI-ASVFLESFLFYSGFWL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L + Sbjct: 170 PMHFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+AY+ E + ++ + AN+ +G E LF NP + Sbjct: 230 LYDNELAYSRELYGESGW---FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G A+ WD Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKTEETADDDWD 319 >gi|152971534|ref|YP_001336643.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956383|gb|ABR78413.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 320 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 121/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 11 NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ A+ P L +F EAVH+ ++ I ++L + F Sbjct: 65 TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA L Y Q E L+ V E FY+GF Sbjct: 125 WSESCDPLQRKAQLMLDYYQA--------------DEPLKKKI-ASVFLESFLFYSGFWL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L + Sbjct: 170 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+AY+ E + ++ + AN+ +G E LF NP + Sbjct: 230 LYDNELAYSRELYGESGW---FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G A+ WD Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKMEETADDDWD 319 >gi|157955376|gb|ABW06076.1| NrdF [Bacillus thuringiensis serovar morrisoni] Length = 322 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYHRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|218547807|ref|YP_002381598.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia fergusonii ATCC 35469] gi|218355348|emb|CAQ87955.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia fergusonii ATCC 35469] Length = 319 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYT 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E S+ KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENASLQRKAQIIQQHYR-------------GDNPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAE---TTWADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|25028975|ref|NP_739029.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium efficiens YS-314] gi|259508040|ref|ZP_05750940.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium efficiens YS-314] gi|23494262|dbj|BAC19229.1| ribonucleotide reductase beta chain [Corynebacterium efficiens YS-314] gi|259164381|gb|EEW48935.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium efficiens YS-314] Length = 334 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P ++P+ +D+ W + LTD E+ R Sbjct: 25 NWNSIPDDKDLEVWD---RLTGNFWLPEKIPVSNDIKSWGT---LTDKEKQATMRVFTGL 78 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ + L AF E+VH+ ++ I +L + F Sbjct: 79 TLLDTIQGTVGAVSLLPDAESLHEEAVLTNIAFMESVHAKSYSNIFMTLASTPQINDAFR 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y + E + V+ E FY+GF Sbjct: 139 WSEENEALQRKAKIILAYYE---------------GEDPLKRKIASVILESFLFYSGFYL 183 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E ++ + +L++ Sbjct: 184 PMYWSSHAKLTNTADVIRLIIRDEAVHGYYVGYKYQKALARESAQRQEELKEYAFDLLYD 243 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + +G ++++++ AN+ + +G E LF E +P + Sbjct: 244 LYENETQYTEDLYDE--LGWT-EDVKRFLRYNANKAMNNLGYEGLFPADETKVSPAILSA 300 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAEHTEDEDWD 333 >gi|228861279|ref|YP_002854302.1| ribonucleotide reductase small subunit [Soft-shelled turtle iridovirus] gi|45550045|gb|AAS67856.1| ribonucleotide reductase small subunit [Rana grylio virus 9506] gi|194307559|gb|ACF42289.1| ribonucleotide reductase small subunit [Soft-shelled turtle iridovirus] Length = 387 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 133/319 (41%), Gaps = 19/319 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 72 CFKPFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T K ++ + + L + V+ EG+ + F +L+ Sbjct: 190 GEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM G+ + ++ +RDE++H+ + + E P + TK+ + + LE Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDLIELFKEDAERVAELE 296 Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328 A+ + GL + Y+ ++ N R +GL L + P PW+ +ID Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356 Query: 329 LKKEKNFFETRVTEYQQGA 347 NFFE VTEY+ G Sbjct: 357 GADLTNFFENHVTEYETGG 375 >gi|329922162|ref|ZP_08277907.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus sp. HGF5] gi|328942352|gb|EGG38619.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus sp. HGF5] Length = 370 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 146/341 (42%), Gaps = 19/341 (5%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + N + + S + ++ ++ Y NHW+ E+PM D + Sbjct: 36 TEAPNRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQQF---PR 92 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L +E+ K N+ A +S+ V + R+ ++ +E VH+ ++ Y Sbjct: 93 LDPEEQRTFKINISLLAVLDSMQTM-FVGDVKRYFTDSSLEAISAIIGQQEVVHNQSYSY 151 Query: 134 IITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 +++S+ ++ E+F ++ P + + + Q + + + V Sbjct: 152 VLSSIVSEQEQKEIFEYWKHDPVLLERNQFISNIYQNFRD--------NPSPQSFFEAMV 203 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 ++ EG++FY+ FA +L R KM+ ++ YI RDE+ H F +V Q+ + P Sbjct: 204 ADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQLLKDFPE 263 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L TKE + A LE +AH T+ G++ Y+++IANRR +GLE Sbjct: 264 LNTKENIDYLYRTIDRAVELETNWAHYTLSN-VRGIDLNELSDYIKYIANRRITMMGLEK 322 Query: 312 LFKYTE-NPFPWMSEVID---LKKEKNFFETRVTEYQQGAE 348 ++ + N PW+ D + +FFE + Y + + Sbjct: 323 AYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGD 363 >gi|319948549|ref|ZP_08022680.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea P4] gi|319437796|gb|EFV92785.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea P4] Length = 338 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 122/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ W N W+P +VP+ +D+ W++ LT+ E+ M R Sbjct: 29 NWNRVPDEVDDQVWG---RLTTNFWLPEKVPVSNDIPSWQT---LTEYEQTMTARVFTGL 82 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ S P L AF E+VH+ ++ I ++L E F Sbjct: 83 TLLDTIQGTVGAVSMIPDASTPHEEAVLTNIAFMESVHAKSYSTIFSTLCSTPQIDEAFR 142 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P + KA L Y + + V+ E FY+GF Sbjct: 143 WAEENPYLQRKAKIILGYYA---------------GDNPLKRKIASVMLESFMFYSGFYL 187 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E + + +L E Sbjct: 188 PMRWSSRAKLTNTADVIRLIIRDEAVHGYYIGYKYQRGLEHVTQAERDELKDYTFELLFE 247 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + VG ++++++ AN+ +G E +F E +P + Sbjct: 248 LYDNEADYTEDLY--DPVGWT-EDVKKFLRYNANKALMNMGYEGMFPKDETDVDPAILSA 304 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 305 LSPNADENHDFFSGSGSSYVMGKAEATEDEDWD 337 >gi|67008229|emb|CAH18519.1| ribonucleoside-dihosphate reductase beta chain [Rhodobacteraceae bacterium 198] Length = 325 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 66/345 (19%), Positives = 123/345 (35%), Gaps = 33/345 (9%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ R + + N+L K W N W+P +VP+ +D+ W + LT D Sbjct: 3 DMTQARAVPKAINWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSW---SQLTPD 56 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ + R +++ + + P L AF EAVH+ ++ + ++ Sbjct: 57 EQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITPHEESVLSNIAFMEAVHARSYSSVFST 116 Query: 138 LG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 L + E F E + AK+ L + +SP V V Sbjct: 117 LCQTTEVDEAFRWSAENEHLQAKSRLILDEYNSTASPLRKK--------------VASVF 162 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 E FY+GF + ++ A+ + I+RDE++H + + K Sbjct: 163 LESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRDEAIHGYYIGYKFQRGLERVSEAERK 222 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 E + + +L + +E Y + + + ++ + AN+ +G E LF Sbjct: 223 EIKDFAFALLFDLYDIEARYTEQLYDGLGL---TEDVKNFLHYNANKALQNLGFEALFPD 279 Query: 316 TE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 NP + + +FF + Y G WD Sbjct: 280 ESCRVNPAIMAALSPGSDENHDFFSGSGSSYVIGKAEATEDEDWD 324 >gi|82778048|ref|YP_404397.1| ribonucleotide-diphosphate reductase subunit beta [Shigella dysenteriae Sd197] gi|81242196|gb|ABB62906.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella dysenteriae Sd197] Length = 322 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 121/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F E VH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEVVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENALLQRKAQIIQQHYR-------------GDNPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKSLEKISEAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKTFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSSSSYVMGKAVE 311 >gi|257069608|ref|YP_003155863.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Brachybacterium faecium DSM 4810] gi|256560426|gb|ACU86273.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Brachybacterium faecium DSM 4810] Length = 322 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 60/343 (17%), Positives = 125/343 (36%), Gaps = 34/343 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D + + N++ K W+ N W+P ++P+ +D+ W + +++E+ Sbjct: 3 DHLKTTIEAINWNRIPDPKDQEVWD---RLTGNFWLPEKIPLSNDIQSW---SRRSEEEQ 56 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 M +++ +++ P AF E+VH+ ++ I ++L Sbjct: 57 KMAMHVFTGLTLLDTVQGTVGAISLIPDAVTPHEEAVYTNIAFMESVHAKSYSQIFSTLA 116 Query: 140 LDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 + E F+ + KA + Y + + + V V+ E Sbjct: 117 NTKQIDEAFHWGATNEQLQKKAQIIMSYYE---------------GDDPEKRKVASVLLE 161 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 FY+GF + ++ A+ + I+RDE++H + + + E Sbjct: 162 SFLFYSGFYLPMRYSSHGELTNTADIIRLIIRDEAVHGYYIGYKYQKAVEKLSAERQAEL 221 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + ++L E E Y + VG + ++++ AN+ +G E LF Sbjct: 222 KDYTFSLLMELYDNEEVYTEDIY--DPVGWT-EDVKVFLRYNANKALMNLGYEGLFPQEA 278 Query: 318 ---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 NP S + + +FF + Y G + WD Sbjct: 279 TQVNPAILASLSPNADENHDFFSGSGSSYVMGKAVETEDDDWD 321 >gi|156932794|ref|YP_001436710.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter sakazakii ATCC BAA-894] gi|156531048|gb|ABU75874.1| hypothetical protein ESA_00590 [Cronobacter sakazakii ATCC BAA-894] Length = 320 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 67/333 (20%), Positives = 120/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 11 NWNKLQDEKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTPGEQQLTIRVFTGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ A+ P L +F EAVH+ ++ I ++L D + Sbjct: 65 TLLDTIQNAVGAPALMADALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCQTPDVDAAYA 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L + + D + L+ V E FY+GF Sbjct: 125 WSEENAPLQRKAQIILAHYR--------------DDDPLKKKI-ASVFLESFLFYSGFYL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q + + + S ++ E Sbjct: 170 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQALAQVDDARRESLKTFSLDLMME 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 E+AY VG ++ + AN+ +G E LF NP + Sbjct: 230 LYDNELAYTEALYRD--VGW-VDDVSAFLCYNANKALMNLGYEALFPPEMAQVNPSILAA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + +FF + Y G + WD Sbjct: 287 LSPGADENHDFFSGSGSSYVMGKAVETEDEDWD 319 >gi|324111310|gb|EGC05292.1| ribonucleotide reductase [Escherichia fergusonii B253] Length = 319 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYT 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E S+ KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENASLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|259417680|ref|ZP_05741599.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter sp. TrichCH4B] gi|259346586|gb|EEW58400.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter sp. TrichCH4B] Length = 325 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 65/345 (18%), Positives = 122/345 (35%), Gaps = 33/345 (9%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ R + + N+L K W N W+P +VP+ +D+ W + LT D Sbjct: 3 DMTQARAVPKAINWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSW---SQLTPD 56 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ + R +++ + + P L AF EAVH+ ++ + ++ Sbjct: 57 EQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITPHEEAVLSNIAFMEAVHARSYSSVFST 116 Query: 138 LG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 L + E F E + AK+ L +SP + V Sbjct: 117 LCQTTEVDEAFRWSAENEHLQAKSRLILDEYDATASPLRKK--------------IASVF 162 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 E FY+GF + ++ A+ + I+RDE++H + + K Sbjct: 163 LESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRDEAIHGYYIGYKFQRGMERLSEAERK 222 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 E + + +L + +E Y + + + ++ + AN+ +G E LF Sbjct: 223 ELKDFAFGLLFDLYDIEARYTEQLYDGLGL---TEDVKNFLHYNANKALQNLGFEALFPE 279 Query: 316 TE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 NP + + +FF + Y G WD Sbjct: 280 ETCRVNPAIMAALSPGSDENHDFFSGSGSSYVIGKAEATEDEDWD 324 >gi|88801048|ref|ZP_01116596.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp. MED297] gi|88776187|gb|EAR07414.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp. MED297] Length = 369 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 126/305 (41%), Gaps = 17/305 (5%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y + + W P EV +Q D + L ++E+ + NL + +S+ Sbjct: 33 RYPIFEQLIEKQLSFFWRPEEVDLQRDRKDF---IALPENEKHIFLSNLKYQTLLDSVQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ AF E VHS ++ +II ++ + ++F P I Sbjct: 90 RSPNVAFLPIVSLPELETWIETWAFSETVHSRSYTHIIRNIVTEPDQIFEDIVTTPEIIE 149 Query: 158 KANWALQYTQTLS---------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 +A Y L S + + L V V E + FY FA Sbjct: 150 RAESISGYYDQLIAGVQKYHLSSETDRESQLHELKRLLLLTMVSVNVLEAIRFYVSFACS 209 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE----NPHLWTKEFQQKSRTM 264 + +M G A+ + I RDE+LHL+ ++ Q + E Q R + Sbjct: 210 FAFAEGARMEGNAKLIKLIARDEALHLSGTEFILRQWLHGGDDPQMQIVADEEQATIRQI 269 Query: 265 LHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 +A E A+A+ G +GLNA QY++++ ++R + L P++ +NP PWM Sbjct: 270 FEDAAEQEKAWANYLFNDGSMIGLNAEILHQYIEYLTDQRLDALSLSPIYGRRDNPLPWM 329 Query: 324 SEVID 328 + Sbjct: 330 DNWVS 334 >gi|261753311|ref|ZP_05997020.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 3 str. 686] gi|261743064|gb|EEY30990.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 3 str. 686] Length = 327 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 29/325 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W++ L E+ + R Sbjct: 18 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 71 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ + + P L +F EAVH+ ++ I ++L L + + Sbjct: 72 TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 131 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ L + L+ V E FY+GF Sbjct: 132 WSEENEFLQRKSTLILDQYHA--------------DDPLKKKI-ASVFLESFLFYSGFYL 176 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 177 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 236 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + ++++ + AN+ +G E LF NP + Sbjct: 237 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 293 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349 + + +FF + Y G + Sbjct: 294 LSPNADENHDFFSGSGSSYVIGKAV 318 >gi|49237365|ref|YP_031646.1| ribonucleoside diphosphate reductase beta subunit-like protein [Frog virus 3] gi|47060183|gb|AAT09727.1| ribonucleoside diphosphate reductase beta subunit-like protein [Frog virus 3] Length = 387 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 133/319 (41%), Gaps = 19/319 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 72 CFKPFRYNWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T K ++ + + L + V+ EG+ + F +L+ Sbjct: 190 GEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM G+ + ++ +RDE++H+ + + E P + TK+ + + LE Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDLIELFKEDAERVAELE 296 Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328 A+ + GL + Y+ ++ N R +GL L + P PW+ +ID Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356 Query: 329 LKKEKNFFETRVTEYQQGA 347 NFFE VTEY+ G Sbjct: 357 GADLTNFFENHVTEYETGG 375 >gi|157955332|gb|ABW06043.1| NrdF [Bacillus thuringiensis serovar galleriae] gi|157955344|gb|ABW06052.1| NrdF [Bacillus thuringiensis serovar tolworthi] Length = 322 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYHRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H F + QI E +E Q++++ +L E +E+AY E Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIYTS 246 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + +++++ AN+ +GLEP F+ E NP ++ + K +FF + Sbjct: 247 IGL---VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 303 GYVKATNVE 311 >gi|163844498|ref|YP_001622153.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis ATCC 23445] gi|163675221|gb|ABY39331.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 329 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 29/325 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W++ L E+ + R Sbjct: 20 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 73 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ + + P L +F EAVH+ ++ I ++L L + + Sbjct: 74 TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ L + L+ V E FY+GF Sbjct: 134 WSEENEFLQRKSTLILDQYHA--------------DDPLKKKI-ASVFLESFLFYSGFYL 178 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 179 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 238 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + ++++ + AN+ +G E LF NP + Sbjct: 239 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 295 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349 + + +FF + Y G + Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAV 320 >gi|306840845|ref|ZP_07473592.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. BO2] gi|306289240|gb|EFM60489.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. BO2] Length = 327 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 57/325 (17%), Positives = 114/325 (35%), Gaps = 29/325 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W++ L E+ + R Sbjct: 18 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 71 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ + + P L +F EAVH+ ++ I ++L L + + Sbjct: 72 TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 131 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ L L+ V E FY+GF Sbjct: 132 WSEENEFLQRKSTLILDQYHA--------------DNPLKKKI-ASVFLESFLFYSGFYL 176 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 177 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 236 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + ++++ + AN+ +G E LF NP + Sbjct: 237 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 293 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349 + + +FF + Y G + Sbjct: 294 LSPNADENHDFFSGSGSSYVIGKAV 318 >gi|116253995|ref|YP_769833.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium leguminosarum bv. viciae 3841] gi|115258643|emb|CAK09747.1| putative ribonucleoside-diphosphate reductase beta subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 324 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 59/333 (17%), Positives = 120/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + + + P L +F EAVH+ ++ I ++L D + + Sbjct: 69 TLLDTIQNGVGSIRLMEDAATPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ ++ ++ + L+ V E FY+GF Sbjct: 129 WSEENEFLQRKSALIMEQYRS--------------GDPLKKKV-ASVFLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMVRLIIRDEAVHGYYIGYKFQRGLERLGDERKQEIKDFAFELLLE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + ++++ + AN+ +G E LF NP + Sbjct: 234 LYDNEAKYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323 >gi|194433043|ref|ZP_03065326.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella dysenteriae 1012] gi|194418770|gb|EDX34856.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella dysenteriae 1012] gi|320180201|gb|EFW55137.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii ATCC 9905] gi|332088601|gb|EGI93714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella dysenteriae 155-74] Length = 319 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKITDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + P +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKIPLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|17989274|ref|NP_541907.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 1 str. 16M] gi|17985137|gb|AAL54171.1| ribonucleoside-diphosphate reductase beta chain [Brucella melitensis bv. 1 str. 16M] Length = 335 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 61/349 (17%), Positives = 121/349 (34%), Gaps = 35/349 (10%) Query: 12 AGEKRVNVDDKRMLNARS------DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 E +N+ K R + N++ K W N W+P +VP+ +D+ Sbjct: 2 TEESFMNMQHKTATKGRPASVRAINWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDI 58 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 W++ L E+ + R +++ + + P L +F EA Sbjct: 59 QSWET---LKPQEKQLTTRVFTGLTLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEA 115 Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 VH+ ++ I ++L L + + E + K+ L Sbjct: 116 VHARSYSSIFSTLCLTPDVDDAYRWSEENEFLQRKSTLILDQYHA--------------D 161 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L+ V E FY+GF + K+ A+ + I+RDE++H + Sbjct: 162 DPLKKKI-ASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQ 220 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 + +E + + +L E E+ Y + ++++ + AN+ Sbjct: 221 RALEVLSEEKRQEIKDFAFELLLELYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKA 277 Query: 304 CHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +G E LF NP + + + +FF + Y G + Sbjct: 278 LMNLGYEALFPAEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAV 326 >gi|86359305|ref|YP_471197.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli CFN 42] gi|86283407|gb|ABC92470.1| ribonucleoside-diphosphate reductase, beta subunit protein [Rhizobium etli CFN 42] Length = 324 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 59/333 (17%), Positives = 116/333 (34%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + + P L +F EAVH+ ++ I ++L D + + Sbjct: 69 TLLDTIQNGVGAVGLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ ++ + V V E FY+GF Sbjct: 129 WSEENEFLQRKSALIMEQYAS---------------GDALKKKVASVFLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLETLSEERRQEIKYFAFDLLLE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + ++++ + AN+ +G E LF NP + Sbjct: 234 LYDNEAKYTEALYDGVGLS---EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323 >gi|296118681|ref|ZP_06837257.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium ammoniagenes DSM 20306] gi|295968170|gb|EFG81419.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium ammoniagenes DSM 20306] Length = 329 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 62/344 (18%), Positives = 128/344 (37%), Gaps = 34/344 (9%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 VD+ + N + K W+ N W+P ++P+ +D+ WK +T E Sbjct: 9 VDNHTEPVKAINWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSWK---KMTPQE 62 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + R +++ +++ +F E+VH+ ++ I +L Sbjct: 63 QQATMRVFTGLTLLDTIQGTVGAISLVPDAETMHEEAVYTNISFMESVHAKSYSNIFMTL 122 Query: 139 GLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 E F E ++ KA + Y + D + + + Sbjct: 123 ATTPQINEAFRWSEENENLQRKAKIIMSYYR-------------GDDPLKKKV--ASTLL 167 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 E FY+GF + L K+ A+ + I+RDES+H + Q + +E Sbjct: 168 ESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEEKQQE 227 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++ + ++++ E+ Y + +G ++++++ AN+ + +G E LF Sbjct: 228 YKDYTFDLMYDLYENELEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTD 284 Query: 317 E---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 E +P S + + +FF + Y G + WD Sbjct: 285 ETKVSPAILSSLSPNADENHDFFSGSGSSYVIGKAEETVDDDWD 328 >gi|38234435|ref|NP_940202.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium diphtheriae NCTC 13129] gi|38200698|emb|CAE50394.1| ribonucleotide reductase beta-chain 1 [Corynebacterium diphtheriae] Length = 328 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 60/333 (18%), Positives = 122/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P ++P+ +D+ W + N L E+ R Sbjct: 19 NWNSIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIKSWNTLNDL---EKQTTMRVFTGL 72 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ + AF E+VH+ ++ I +L + F Sbjct: 73 TLLDTIQGTVGAVSMLPDAVSLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPEINDAFR 132 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y + D + + + E FY+GF Sbjct: 133 WSEENENLQKKAKIILSYY-------------EGDDPLKRKV--ASTLLESFLFYSGFYL 177 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q + E + + +L++ Sbjct: 178 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKFQQALRKETPERQAELKGYTFDLLYD 237 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324 EI Y + +G ++++++ AN+ + +G E LF E P + Sbjct: 238 LYDNEIQYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEALFPADECRVSPAILSA 294 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G + WD Sbjct: 295 LSPNADENHDFFSGSGSSYVIGKAENTTDDDWD 327 >gi|311278369|ref|YP_003940600.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1] gi|308747564|gb|ADO47316.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1] Length = 320 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 60/333 (18%), Positives = 120/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P ++P+ +D+ W+S L+ E+ + R Sbjct: 11 NWNRIEDEKDLEVWN---RLTSNFWLPEKIPLSNDIPAWQS---LSHAEQQLTIRVFTGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ ++ P L F EAVH+ ++ I ++L D + Sbjct: 65 TLLDTVQNTVGAPSLMPDALTPHEEAVLSNIGFMEAVHARSYSSIFSTLCQSKDVDAAYA 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L + + + V E FY+GF Sbjct: 125 WSEENAPLQQKARTVLGHYAA---------------DCPLKRKIASVFLESFLFYSGFWL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + P + + ++ +L Sbjct: 170 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKIPPARREALRNEAVDLLMN 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+AY + G ++++ + AN+ +G E LF NP + Sbjct: 230 LYENELAYTEALYAQ--TGWT-EEVKRFLCYNANKALMNLGYEALFPAEMADVNPAILAA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 287 LSPNADENHDFFSGSGSSYVMGKTVGTHDEDWD 319 >gi|218706176|ref|YP_002413695.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UMN026] gi|293406173|ref|ZP_06650099.1| ribonucleotide reductase beta subunit [Escherichia coli FVEC1412] gi|298381910|ref|ZP_06991507.1| ribonucleoside-diphosphate reductase subunit beta [Escherichia coli FVEC1302] gi|300898656|ref|ZP_07116977.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 198-1] gi|301019059|ref|ZP_07183270.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 69-1] gi|331674197|ref|ZP_08374957.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA280] gi|218433273|emb|CAR14173.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli UMN026] gi|291426179|gb|EFE99211.1| ribonucleotide reductase beta subunit [Escherichia coli FVEC1412] gi|298277050|gb|EFI18566.1| ribonucleoside-diphosphate reductase subunit beta [Escherichia coli FVEC1302] gi|300357684|gb|EFJ73554.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 198-1] gi|300399412|gb|EFJ82950.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 69-1] gi|331068291|gb|EGI39686.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA280] Length = 319 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDNPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKSQEKISQAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|91212037|ref|YP_542023.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UTI89] gi|117624912|ref|YP_853853.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli APEC O1] gi|218559668|ref|YP_002392581.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli S88] gi|237706702|ref|ZP_04537183.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 3_2_53FAA] gi|91073611|gb|ABE08492.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli UTI89] gi|115514036|gb|ABJ02111.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli APEC O1] gi|218366437|emb|CAR04189.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli S88] gi|226899742|gb|EEH86001.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 3_2_53FAA] gi|294492274|gb|ADE91030.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli IHE3034] gi|315284934|gb|EFU44379.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 110-3] gi|323951102|gb|EGB46978.1| ribonucleotide reductase [Escherichia coli H252] gi|323957111|gb|EGB52836.1| ribonucleotide reductase [Escherichia coli H263] Length = 319 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 61/326 (18%), Positives = 123/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + + +E + + +L E Sbjct: 169 PMYFASRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNQEKISQAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + + + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|23500072|ref|NP_699512.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis 1330] gi|62317763|ref|YP_223616.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 1 str. 9-941] gi|83269749|ref|YP_419040.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis biovar Abortus 2308] gi|148558197|ref|YP_001257348.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ovis ATCC 25840] gi|161620390|ref|YP_001594276.1| ribonucleotide-diphosphate reductase subunit beta [Brucella canis ATCC 23365] gi|189023015|ref|YP_001932756.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus S19] gi|254691263|ref|ZP_05154517.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 6 str. 870] gi|254695435|ref|ZP_05157263.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 3 str. Tulya] gi|254699051|ref|ZP_05160879.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|254699599|ref|ZP_05161427.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 5 str. 513] gi|254706144|ref|ZP_05167972.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M163/99/10] gi|254711557|ref|ZP_05173368.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis B2/94] gi|254712154|ref|ZP_05173965.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M644/93/1] gi|254715225|ref|ZP_05177036.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M13/05/1] gi|254720036|ref|ZP_05181847.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. 83/13] gi|254732497|ref|ZP_05191075.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 4 str. 292] gi|256029807|ref|ZP_05443421.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M292/94/1] gi|256059454|ref|ZP_05449656.1| ribonucleotide-diphosphate reductase subunit beta [Brucella neotomae 5K33] gi|256157977|ref|ZP_05455895.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M490/95/1] gi|256253064|ref|ZP_05458600.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti B1/94] gi|256256449|ref|ZP_05461985.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 9 str. C68] gi|260167086|ref|ZP_05753897.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. F5/99] gi|260544998|ref|ZP_05820819.1| ribonucleotide reductase [Brucella abortus NCTC 8038] gi|260568371|ref|ZP_05838840.1| ribonucleotide reductase [Brucella suis bv. 4 str. 40] gi|260756870|ref|ZP_05869218.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 6 str. 870] gi|260760301|ref|ZP_05872649.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 4 str. 292] gi|260763541|ref|ZP_05875873.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|260882684|ref|ZP_05894298.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 9 str. C68] gi|261215815|ref|ZP_05930096.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 3 str. Tulya] gi|261216944|ref|ZP_05931225.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M13/05/1] gi|261220160|ref|ZP_05934441.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti B1/94] gi|261313587|ref|ZP_05952784.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M163/99/10] gi|261319174|ref|ZP_05958371.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis B2/94] gi|261319814|ref|ZP_05959011.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M644/93/1] gi|261323425|ref|ZP_05962622.1| ribonucleotide-diphosphate reductase subunit beta [Brucella neotomae 5K33] gi|261750056|ref|ZP_05993765.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 5 str. 513] gi|261756480|ref|ZP_06000189.1| ribonucleotide reductase [Brucella sp. F5/99] gi|265985045|ref|ZP_06097780.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. 83/13] gi|265986823|ref|ZP_06099380.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M292/94/1] gi|265996493|ref|ZP_06109050.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M490/95/1] gi|297249809|ref|ZP_06933510.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella abortus bv. 5 str. B3196] gi|306839412|ref|ZP_07472226.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. NF 2653] gi|306845616|ref|ZP_07478185.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. BO1] gi|23463663|gb|AAN33517.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella suis 1330] gi|62197956|gb|AAX76255.1| NrdF, ribonucleoside-diphosphate reductase, beta subunit [Brucella abortus bv. 1 str. 9-941] gi|82940023|emb|CAJ13054.1| Ribonucleotide reductase [Brucella melitensis biovar Abortus 2308] gi|148369482|gb|ABQ62354.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella ovis ATCC 25840] gi|161337201|gb|ABX63505.1| Ribonucleoside-diphosphate reductase [Brucella canis ATCC 23365] gi|189021589|gb|ACD74310.1| Ribonucleotide reductase [Brucella abortus S19] gi|260098269|gb|EEW82143.1| ribonucleotide reductase [Brucella abortus NCTC 8038] gi|260155036|gb|EEW90117.1| ribonucleotide reductase [Brucella suis bv. 4 str. 40] gi|260670619|gb|EEX57559.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 4 str. 292] gi|260673962|gb|EEX60783.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|260676978|gb|EEX63799.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 6 str. 870] gi|260872212|gb|EEX79281.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 9 str. C68] gi|260917422|gb|EEX84283.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus bv. 3 str. Tulya] gi|260918744|gb|EEX85397.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti B1/94] gi|260922033|gb|EEX88601.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M13/05/1] gi|261292504|gb|EEX96000.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M644/93/1] gi|261298397|gb|EEY01894.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis B2/94] gi|261299405|gb|EEY02902.1| ribonucleotide-diphosphate reductase subunit beta [Brucella neotomae 5K33] gi|261302613|gb|EEY06110.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M163/99/10] gi|261736464|gb|EEY24460.1| ribonucleotide reductase [Brucella sp. F5/99] gi|261739809|gb|EEY27735.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 5 str. 513] gi|262550790|gb|EEZ06951.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti M490/95/1] gi|264659020|gb|EEZ29281.1| ribonucleotide-diphosphate reductase subunit beta [Brucella pinnipedialis M292/94/1] gi|264663637|gb|EEZ33898.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. 83/13] gi|297173678|gb|EFH33042.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella abortus bv. 5 str. B3196] gi|306273937|gb|EFM55764.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. BO1] gi|306405535|gb|EFM61800.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. NF 2653] Length = 329 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 29/325 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W++ L E+ + R Sbjct: 20 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 73 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ + + P L +F EAVH+ ++ I ++L L + + Sbjct: 74 TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ L + L+ V E FY+GF Sbjct: 134 WSEENEFLQRKSTLILDQYHA--------------DDPLKKKI-ASVFLESFLFYSGFYL 178 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 179 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 238 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + ++++ + AN+ +G E LF NP + Sbjct: 239 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 295 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349 + + +FF + Y G + Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAV 320 >gi|294945135|ref|XP_002784568.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus ATCC 50983] gi|239897674|gb|EER16364.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus ATCC 50983] Length = 238 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 25/230 (10%) Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E +HS T+ +I + D E F VPS+ KA WAL + Sbjct: 1 MENIHSETYSLLIDNYIKDPAEKDKIFRAIETVPSVRKKAEWALSWIN------------ 48 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D + + + EG+ F F I L + M G+ + I RDE LH +F Sbjct: 49 --DDNCFSERLIAFACVEGILFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHADFAC 106 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + N + +T+ ++ ++ A +E + E++P +G+N+ +Y++F+ Sbjct: 107 LLYNMMH------YTRLPDERVHEIVRGAVDVERVFISESLPVSLIGMNSQLMCRYIEFV 160 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 A+R +G L+ T NPF WM ++I L+ + NFFE RV EYQ+G + Sbjct: 161 ADRLLVALGHPKLYNAT-NPFDWM-KMISLQGKTNFFEKRVGEYQKGGVM 208 >gi|310639978|ref|YP_003944736.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] gi|309244928|gb|ADO54495.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] Length = 343 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 78/341 (22%), Positives = 152/341 (44%), Gaps = 19/341 (5%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + N + + S + ++ ++ Y NHW+P E+PM D + + Sbjct: 9 TEAPNRSTRIIEGENSGILNWNDIRMPHMYKLYKVLLLNHWIPDEIPMSKDASQF---PM 65 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L +E+ K N+G A +S+ V + R+ ++ +E VH+ ++ Y Sbjct: 66 LDAEEQRTFKINIGLLAVLDSMQTM-FVGDVKRYFTDSSLEAISAIIGQQEVVHNQSYSY 124 Query: 134 IITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 +++SL ++ E+F ++ P + + T S + + + + V Sbjct: 125 VLSSLVSEQEQKEIFEYWKNDPVLLER--------NTFISAIYQEFRDEQNPQTFFQAMV 176 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 ++ EG++FY+ FA +L R KM+ ++ YI RDE+ H F +V Q+ + P Sbjct: 177 ADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQLLADFPE 236 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L TKE M++ A LE +AH T+ K G++ Y++++AN R +G++ Sbjct: 237 LNTKENMDYVYRMINRAVELETNWAHYTL-KEVRGIDLNELSDYIKYMANMRLRLLGMDK 295 Query: 312 LFKYTE-NPFPWMSEVID---LKKEKNFFETRVTEYQQGAE 348 ++ + N PW+ D + +FFE + Y + + Sbjct: 296 AYEGVDINSMPWIKPFSDEALNATKTDFFEAKSRNYGKVGD 336 >gi|188533084|ref|YP_001906881.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia tasmaniensis Et1/99] gi|188028126|emb|CAO95983.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia tasmaniensis Et1/99] Length = 319 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 121/330 (36%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W N L +E+ + R Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPAW---NSLNAEEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + AKA LQ+ + + V E FY+GF + Sbjct: 127 ENAPLQAKAQIILQHY---------------YHDDALKKKIASVFLESFLFYSGFYLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I++DE++H + + + +E QQ + +L E Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKSLEKETAPRKEELQQFAIDLLLELYE 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 E+AY VG ++++ + AN+ +G + LF NP + Sbjct: 232 NEVAYTEALYAG--VGWQ-EDVKKFLHYNANKALMNLGYQALFPSYMTDVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 289 NADENHDFFSGSGSSYVMGKAVETEDEDWD 318 >gi|239833484|ref|ZP_04681812.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum intermedium LMG 3301] gi|239821547|gb|EEQ93116.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum intermedium LMG 3301] Length = 328 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 58/334 (17%), Positives = 117/334 (35%), Gaps = 29/334 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 K + N++ K W N W+P +VP+ +D+ W++ L +E+ Sbjct: 10 PKPAAVRAINWNRIEDEKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKREEKQ 63 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + R +++ + + P L +F EAVH+ ++ I ++L L Sbjct: 64 LTIRVFTGLTLLDTIQNAVGAVKLMDDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCL 123 Query: 141 DE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + + E + K+ L + L+ V E Sbjct: 124 TPDVDDAYRWSEENEFLQRKSVLILDQYHA--------------GDPLKKKI-ASVFLES 168 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 FY+GF + K+ A+ + I+RDE++H + + +E + Sbjct: 169 FLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLERLNGEQKQEIK 228 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE- 317 + +L E E+ Y + ++++ + AN+ +G E LF Sbjct: 229 DFAFELLLELYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPADAC 285 Query: 318 --NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NP + + + +FF + Y G + Sbjct: 286 KVNPAILSALSPNADENHDFFSGSGSSYVIGKAV 319 >gi|281179683|dbj|BAI56013.1| ribonucleoside-diphosphate reductase beta subunit [Escherichia coli SE15] Length = 319 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|331035505|gb|AEC53062.1| ribonucleotide reductase subunit B [Synechococcus phage S-CRM01] Length = 381 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 79/356 (22%), Positives = 142/356 (39%), Gaps = 28/356 (7%) Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 V++ + M + + Q L KY + + W P EV +Q D + +++ L Sbjct: 14 VDLKQQPMFFGQPLGIQQYLDYKYPLFEKLTQTQLGFFWRPEEVSLQKDRSDYQN---LR 70 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 +++ + NL + +S+ LA + S PE + F E +HS ++ +II Sbjct: 71 PEQKHIFTSNLKYQVMLDSVQGRGPSLAFLPYCSLPELESCMEVWGFMEMIHSRSYTHII 130 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA-------------- 181 +L E+F+ I +A + + + + + Sbjct: 131 KNLYPQPEEVFSTILSDSKIMERAKSVTESYDSFINAAHHYDNGNGWKFAKEGVPASQAE 190 Query: 182 ---DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + L + + EG+ FY FA + G M G A+ I RDE+ HL Sbjct: 191 RYELKRKLFRAVMTVNILEGIRFYVSFACSFAFGELKVMEGSAKIISLIARDENQHLFLT 250 Query: 239 IDVINQIKIENPHLWTKEFQQKS---RTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294 ++IN + + K + ++ ++ A E A+A G +GL+ Sbjct: 251 QNIINNWRNNDDPEMKKIYNEEIDHTTSLFEAAVDQEKAWAQYLFKTGSMIGLSEKLLCN 310 Query: 295 YMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347 Y+++IANRR IG++P++ NP PWM + K +N ET + Y G Sbjct: 311 YVEWIANRRMKAIGIKPIYEIPANSNPLPWMDHWLKSKGVQNAPQETEIESYIVGG 366 >gi|306812443|ref|ZP_07446641.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli NC101] gi|222034376|emb|CAP77117.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli LF82] gi|305854481|gb|EFM54919.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli NC101] gi|312947211|gb|ADR28038.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O83:H1 str. NRG 857C] Length = 319 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 61/326 (18%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + + + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|293415927|ref|ZP_06658567.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] gi|291432116|gb|EFF05098.1| ribonucleoside-diphosphate reductase [Escherichia coli B185] Length = 319 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|18656506|gb|AAL77807.1|AF389451_14 ribonucleoside-diphosphate reductase beta subunit [Tiger frog virus] Length = 387 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 72/319 (22%), Positives = 132/319 (41%), Gaps = 19/319 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 72 CFKPFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T K ++ + + L + V+ EG+ + F +L+ Sbjct: 190 VEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM G+ + ++ +RDE++H+ + + E P + TK+ + + LE Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDIIELFKEDAERVAELE 296 Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328 A+ + L + Y+ ++ N R +GL L + P PW+ +ID Sbjct: 297 EAFVDLAFQECGPVCELEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356 Query: 329 LKKEKNFFETRVTEYQQGA 347 NFFE VTEY+ G Sbjct: 357 GADLTNFFENHVTEYETGG 375 >gi|330908707|gb|EGH37221.1| ribonucleotide reductase of class 1b (aerobic), beta subunit [Escherichia coli AA86] Length = 319 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARHEELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|300932708|ref|ZP_07147964.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium resistens DSM 45100] Length = 331 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 60/351 (17%), Positives = 123/351 (35%), Gaps = 31/351 (8%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 G + +R+ + E + N W+P +VP+ +D+ W + Sbjct: 1 MGAHEPHSPARRVKGDPISAINWNSIPDDKDLEVWDRLTANFWLPEKVPLSNDVQSWGT- 59 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 L + ER R +++ +++ +F E+VH+ ++ Sbjct: 60 --LNEVERQTTMRVFTGLTMLDTIQGTVGAVSLINDAQTMHEEAVYTNISFMESVHAKSY 117 Query: 132 QYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 I +L + F E + KA L + + D + + Sbjct: 118 SSIFMTLASTPEINDAFRWSEENEHLQNKAKIILDFY-------------EGDDPQKRKI 164 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 V+ E FY+GF + K+ A+ + I+RDES+H + + + Sbjct: 165 --ASVLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDESVHGYYIGYKYQRAMEQE 222 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 +E + + +L E E Y + + +G ++++++ AN+ + +G Sbjct: 223 SAARQEELKDHTFDLLLELYDNEAQYTEDLYDE--LGWT-EDVKRFLRYNANKALNNLGY 279 Query: 310 EPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 E LF E +P + + +FF + Y G + WD Sbjct: 280 EGLFPADETRVSPAILSALNPGGDENHDFFSGSGSSYVIGKAENTTDDDWD 330 >gi|170765644|ref|ZP_02900455.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia albertii TW07627] gi|170124790|gb|EDS93721.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia albertii TW07627] Length = 319 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 125/326 (38%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + L K+ A+ + I+RDE++H + + + + +E ++ + +L E Sbjct: 169 PMYLSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQKNQEKISLTQREELKRFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAE---TTWADDVKAFLCYNANKALMNLGYEPLFPAEMAKVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|225734460|gb|ACO25228.1| hypothetical protein [Epizootic haematopoietic necrosis virus] Length = 387 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 71/319 (22%), Positives = 131/319 (41%), Gaps = 19/319 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 72 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 131 DVEVGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T K ++ + + L + V+ EG+ + F +L+ Sbjct: 190 EEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R KM G+ + ++ +RDE++H+ + + E P + ++ + + LE Sbjct: 237 RRGKMKGMGKVVEWSVRDENMHVEGVSKLFETLNSEYPWVVNEDLIELFKEDAERVAELE 296 Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328 A+ + GL + Y+ ++ N R +GL L + P PW+ +ID Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRASNMGLPRLIERAPEACPIPWVKWLID 356 Query: 329 LKKEKNFFETRVTEYQQGA 347 NFFE VTEY+ G Sbjct: 357 GADLTNFFENHVTEYETGG 375 >gi|258622932|ref|ZP_05717948.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM573] gi|258624605|ref|ZP_05719543.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM603] gi|262165762|ref|ZP_06033499.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus VM223] gi|262171415|ref|ZP_06039093.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus MB-451] gi|258583152|gb|EEW07963.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM603] gi|258584871|gb|EEW09604.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus VM573] gi|261892491|gb|EEY38477.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus MB-451] gi|262025478|gb|EEY44146.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio mimicus VM223] Length = 323 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 119/333 (35%), Gaps = 33/333 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W N W+P +VP+ +DL+ W LT+ E+ + R Sbjct: 13 NWNRLQDEKDLEIWN---RLTVNFWLPEKVPLSNDLSTW---GLLTEQEQTLTIRVFTGL 66 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + A+ L AF EAVH+ ++ + ++L + E F Sbjct: 67 TLLDTIQNSVGAPALMVDAVTQHEEAVLTNIAFMEAVHARSYSSVFSTLCTTKQIDEAFR 126 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P + KA L Q E + V E FY+GF Sbjct: 127 WSEENPHLQRKAQLILHEYQA--------------GECPLKKKIASVFLESFLFYSGFYL 172 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + + + ++L + Sbjct: 173 PMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLAYRQLDEAQQAQIKDYAFSLLFD 232 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324 E +Y + + ++ + AN+ +G EPLF NP + Sbjct: 233 LYEAEASYTEFLYDPVGL---TEEVKHFLHYNANKALMNLGFEPLFPEEVCEVNPAILAA 289 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 290 LSPNADENHDFFSGSGSSYVIGQAVATQDEDWD 322 >gi|218680499|ref|ZP_03528396.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli CIAT 894] Length = 324 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 119/331 (35%), Gaps = 30/331 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ + + P L +F EAVH+ ++ I ++L + N Y Sbjct: 69 TLLDTIQNGVGSIRLMEDAITPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPD-VDNAY 127 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 R N LQ L + +G + V V E FY+GF + Sbjct: 128 RWSEE-----NEFLQRKSALIMEQYASGDPLKKK-------VASVFLESFLFYSGFYLPM 175 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 176 YWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLELLGEERRQELKDFAFDLLLELY 235 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 E Y + + ++++ + AN+ +G E LF NP + Sbjct: 236 DNEARYTEALYDRVGL---TEDVKEFLHYNANKALMNLGYEALFPAEACKVNPAILSALS 292 Query: 327 IDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 293 PNADENHDFFSGSGSSYVIGKAVATEDEDWD 323 >gi|153010278|ref|YP_001371492.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum anthropi ATCC 49188] gi|151562166|gb|ABS15663.1| Ribonucleoside-diphosphate reductase [Ochrobactrum anthropi ATCC 49188] Length = 328 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 117/335 (34%), Gaps = 29/335 (8%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 + K + N++ K W N W+P +VP+ +D+ W++ L E+ Sbjct: 9 NPKPAAVRAINWNRIEDEKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEK 62 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 + R +++ + + + P L +F EAVH+ ++ I ++L Sbjct: 63 QLTIRVFTGLTLLDTIQNAVGAVKLMDDAATPHEEAVLSNISFMEAVHARSYSSIFSTLC 122 Query: 140 LDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 L + + E + K+ L + + + V E Sbjct: 123 LTPDVDDAYRWSEENEFLQRKSVLILDQYRA---------------DDPLKRKIASVFLE 167 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 FY+GF + K+ A+ + I+RDE++H + + + Sbjct: 168 SFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLERLNEEQKQAI 227 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + +L E E+ Y + ++++ + AN+ +G E LF Sbjct: 228 KDFAFELLLELYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEA 284 Query: 318 ---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NP + + + +FF + Y G + Sbjct: 285 CKVNPAILSALSPNADENHDFFSGSGSSYVIGKAV 319 >gi|190893561|ref|YP_001980103.1| ribonucleoside-diphosphate reductase, beta subunit [Rhizobium etli CIAT 652] gi|190698840|gb|ACE92925.1| ribonucleoside-diphosphate reductase protein, beta subunit [Rhizobium etli CIAT 652] Length = 324 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + + P L +F EAVH+ ++ I ++L D + + Sbjct: 69 TLLDTIQNGVGAIRLMEDAMTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDIDDAYR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ ++ G+ DA ++ + V E FY+GF Sbjct: 129 WSEENEFLQRKSALIMEQY----------GSGDALKKKV-----ASVFLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + ++ + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEERRQQIKDFAFDLLLE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y E + G ++++ + AN+ +G E LF NP + Sbjct: 234 LYDNEARYT-EALYDGLGLT--EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323 >gi|331648397|ref|ZP_08349485.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M605] gi|331042144|gb|EGI14286.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M605] Length = 319 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQTRREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|284922618|emb|CBG35706.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli 042] Length = 319 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQKLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMKKISQAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|56460472|ref|YP_155753.1| ribonucleotide-diphosphate reductase subunit beta [Idiomarina loihiensis L2TR] gi|56179482|gb|AAV82204.1| Ribonucleotide reductase, beta subunit [Idiomarina loihiensis L2TR] Length = 377 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 75/339 (22%), Positives = 132/339 (38%), Gaps = 25/339 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 E+ + + L +V + K+ + + W P E+ + D + Sbjct: 6 FNQEQNNPLTEPMFLGNSVNVARYDQQKHSIFEKLIEKQISFFWRPEEIDVSRDRIDF-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N LT E+ + NL + +S+ + +A+ +S PE ++ +F E +HS + Sbjct: 64 -NKLTASEKHVFISNLKYQTLLDSIQGRSPNIALLPIVSLPELETWIETWSFFETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSF 174 + +I+ +L D E+F I +AN +Y L Sbjct: 123 YTHILRNLFSDPSEVFEDIVINEQIKIRANDISKYYDDLIFYTQLLQTHGEGDVVVEGKT 182 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 T T+ ++ L E + FY FA + M G A+ + I RDE++H Sbjct: 183 HTVTQREIKKKLFLCINSVNALEAIRFYVSFACTFAFAERELMEGNAKIIKLIARDENVH 242 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQK----SRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + KE ++ + + A E +AH G +GLN Sbjct: 243 LTSTQHILNLWQYGEDDPEMKEIAEELRDDAYEIFMTAVKQEKQWAHYLFKDGSMIGLNE 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVI 327 QY+++IAN R IG + F NP PWM++ + Sbjct: 303 SMLCQYVEYIANLRMQAIGFDAPFENQRSNPLPWMNKYL 341 >gi|308187851|ref|YP_003931982.1| ribonucleoside-diphosphate reductase beta chain [Pantoea vagans C9-1] gi|308058361|gb|ADO10533.1| ribonucleoside-diphosphate reductase beta chain [Pantoea vagans C9-1] Length = 326 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 120/326 (36%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +DL W++ L ++ + R Sbjct: 17 NWNRIQDDKDLEVWN---RLTSNFWLPEKVPLSNDLPGWQT---LDKQQQQLTIRVFTGL 70 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + P L +F EAVH+ ++ I ++L D + Sbjct: 71 TLLDTIQNVIGAPGLMEDAITPHEEAVLSNISFMEAVHARSYSSIFSTLCNTQDVDAAYQ 130 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L++ + + L+ V E FY+GF Sbjct: 131 WSEENGPLQNKARIILEHYRA--------------DDPLKKKI-ASVFLESFLFYSGFWL 175 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q L +E QQ + +L Sbjct: 176 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQALASADDLRREELQQFAYDLLLA 235 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324 E+AY VG + ++ + AN+ +G E LF NP + Sbjct: 236 LYENEVAYTEALYGD--VGW-VDEVKTFLHYNANKALMNLGYEALFPAELTAVNPAILSA 292 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 293 LSPNADENHDFFSGSGSSYVMGKAVE 318 >gi|215487997|ref|YP_002330428.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O127:H6 str. E2348/69] gi|215266069|emb|CAS10489.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli O127:H6 str. E2348/69] Length = 319 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|291284009|ref|YP_003500827.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli O55:H7 str. CB9615] gi|290763882|gb|ADD57843.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli O55:H7 str. CB9615] Length = 319 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISPGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|253574542|ref|ZP_04851883.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251846247|gb|EES74254.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 343 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 78/341 (22%), Positives = 149/341 (43%), Gaps = 19/341 (5%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + N + + S + ++ ++ Y NHW+ E+PM D + Sbjct: 9 TEAPNKSTRIIGGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMAKDAQQFA---L 65 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L +E+ K N+ A +S+ V + R+ ++ +E VH+ ++ Y Sbjct: 66 LDPEEQRTFKINISLLAVLDSMQTM-FVGDVKRYFTDSSLEAISAIIGQQEVVHNQSYSY 124 Query: 134 IITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 +++S+ ++ E+F ++ P + + + Q + + + V Sbjct: 125 VLSSIVSEQEQKEIFEYWKHDPVLLDRNKFIANIYQNFRD--------EPTPQSFFEALV 176 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 ++ EG++FY+ FA +L R KM+G ++ YI RDE+ H F +V Q+ I+ P Sbjct: 177 ADLILEGIFFYSTFAFFYNLARDQKMMGTSQMISYIQRDENQHCYFFAEVFKQLLIDYPE 236 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L TKE + + A LE +AH T+ K G++ Y+++IAN+R +GLE Sbjct: 237 LNTKENIDYAYRTIDRAVELETNWAHYTL-KNVPGIDLNELSDYIKYIANKRLTLMGLEK 295 Query: 312 LFKYTE-NPFPWMSEVID---LKKEKNFFETRVTEYQQGAE 348 + + N PW+ D + +FFE + Y + + Sbjct: 296 AYAGVDINCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGD 336 >gi|307625752|gb|ADN70056.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli UM146] Length = 319 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 61/326 (18%), Positives = 123/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + + +E + + +L E Sbjct: 169 PMYFASRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNQEKISQAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + + + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKVLMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|254702722|ref|ZP_05164550.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis bv. 3 str. 686] Length = 335 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 29/325 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W++ L E+ + R Sbjct: 26 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 79 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ + + P L +F EAVH+ ++ I ++L L + + Sbjct: 80 TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 139 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ L + L+ V E FY+GF Sbjct: 140 WSEENEFLQRKSTLILDQYHA--------------DDPLKKKI-ASVFLESFLFYSGFYL 184 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 185 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 244 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + ++++ + AN+ +G E LF NP + Sbjct: 245 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 301 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349 + + +FF + Y G + Sbjct: 302 LSPNADENHDFFSGSGSSYVIGKAV 326 >gi|331654159|ref|ZP_08355159.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M718] gi|331047541|gb|EGI19618.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli M718] Length = 319 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILTA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|262043918|ref|ZP_06017006.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038772|gb|EEW39955.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 320 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 121/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 11 NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTEL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ A+ P L +F EAVH+ ++ I ++L + F Sbjct: 65 TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA L Y Q E L+ V E FY+GF Sbjct: 125 WSESCDPLQRKAQLMLGYYQA--------------DEPLKKKI-ASVFLESFLFYSGFWL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L + Sbjct: 170 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+AY+ E + ++ + AN+ +G E LF NP + Sbjct: 230 LYDNELAYSRELYGESGW---FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G A+ WD Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKMEETADDDWD 319 >gi|294853320|ref|ZP_06793992.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026] gi|294818975|gb|EFG35975.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026] Length = 329 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 29/325 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W++ L E+ + R Sbjct: 20 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 73 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ + + P L +F EAVH+ ++ I ++L L + + Sbjct: 74 TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 133 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ L + L+ V E FY+GF Sbjct: 134 WSEENEFLQRKSTLILDQYHA--------------DDPLKKKI-ASVFLESFLFYSGFYL 178 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 179 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLFEEKRQEIKDFAFELLLE 238 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + ++++ + AN+ +G E LF NP + Sbjct: 239 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 295 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349 + + +FF + Y G + Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAV 320 >gi|1395207|gb|AAB81405.1| ribonucleotide reductase R2-1 small subunit [Mycobacterium tuberculosis str. Erdman] Length = 321 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 71/333 (21%), Positives = 129/333 (38%), Gaps = 35/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+LL K WE N W+P ++P+ +DLA W++ L+ E+ R Sbjct: 13 NWNRLLDAKDLQVWE---RLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGL 66 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++ A +A+ P L AF E+VH+ ++ I ++L + + F+ Sbjct: 67 TLLDTAQATVGAVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFD 126 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + P + KA + Y + D Q V+ E FY+GF Sbjct: 127 WSEQNPYLQRKAQIIVDYYR-------------GDDAQAQRS---SVMLESFLFYSGFYL 170 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + + ++ + +LH Sbjct: 171 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHT 230 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI YAH+ + +G YM++ AN+ +G +P F NP + Sbjct: 231 LYANEIDYAHDLYDE--LGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAA 287 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + +FF + Y G + WD Sbjct: 288 LDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 320 >gi|71892252|ref|YP_277986.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796358|gb|AAZ41109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 376 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 76/350 (21%), Positives = 136/350 (38%), Gaps = 37/350 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ ++ + K+ + + W P E+ + Sbjct: 10 KNNQLLEPMFLGQPV-------------NIARFDQQKHSIFEKLIEKQLSFFWRPEEIDI 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++S L D E+ + NL + +S+ + +A+ +S PE ++ + Sbjct: 57 SKDRIDFQS---LPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELEIWVETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS---------- 171 F E +HS ++ +II ++ +F+ I +A Y L Sbjct: 114 FFETIHSRSYTHIIRNIVNHPSLIFDDIISNKEILKRAKDISTYYDNLIELTSYYHILGP 173 Query: 172 --PSFTTGTKDADQEFLQDLFVFYV----VFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 T + L+ + V E + FY FA + M G A+ + Sbjct: 174 GIHQINNNTVAVNLHELKKKLYLCLISVNVLEAIRFYVSFACSFAFAERELMEGNAKIIR 233 Query: 226 YIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I RDE+LHLN ++N ++ ++P + + E QQ+S + A E +A+ Sbjct: 234 LIARDEALHLNATQHILNLMRSGSDDPEMADISTECQQESYALFLMAAEQEKNWANYLFK 293 Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 G +GLN QY+++I N R IGL F N PW++ + Sbjct: 294 DGSMIGLNKDILCQYIEYITNIRMQAIGLRTPFNIKSNVIPWINSWLSSD 343 >gi|324005772|gb|EGB74991.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 57-2] Length = 319 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAE---TTWADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|308068541|ref|YP_003870146.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] gi|305857820|gb|ADM69608.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide reductase small subunit) [Paenibacillus polymyxa E681] Length = 321 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 122/310 (39%), Gaps = 23/310 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+P+ DD W + L+D E+ + LG +++ + I Sbjct: 20 FWNQNIMQFWTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQI 76 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + L A E +H+ ++ I T+L E +F E P + KA Sbjct: 77 MEHVDGLQRKAVLSFMAMMEQIHAKSYSSIFTTLASTEEIDGVFRWVEENPHLQTKAETI 136 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 QY + +P + L V+ E FY+GF L L KM E Sbjct: 137 RQYYMNIHTP-----------KDLYLAMAASVLLESYLFYSGFFYPLYLAGQGKMTCSGE 185 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-P 281 I+RDES+H + + +I E ++ Q +L E Y + P Sbjct: 186 IIDLILRDESIHGVYVGVLAQEIYAELAEEEQRDLYQTLVGLLRYLHNNEEQYTEQIYTP 245 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 G V + ++++ AN+ +G +PLF+ E NP + + + K+ +FF + Sbjct: 246 IGLV----DDVKVFLRYNANKAMMNLGFDPLFEEEEVNPIVF-NGISTHTKQHDFFSKKG 300 Query: 341 TEYQQGAELK 350 Y + ++ Sbjct: 301 NGYVRAMNVE 310 >gi|300780546|ref|ZP_07090401.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium genitalium ATCC 33030] gi|300533532|gb|EFK54592.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium genitalium ATCC 33030] Length = 333 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 121/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P ++P+ +D+ W + L D E+L R Sbjct: 24 NWNSIPDDKDQEVWD---RLTGNFWLPEKIPVSNDIPSWNT---LNDAEQLSTMRVFANL 77 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ AF E+VH+ ++ I +L + F Sbjct: 78 TLLDTIQGTVGAVSLIPDAKTLHEEAVYTNIAFMESVHAKSYSNIYMTLASTPQINDAFR 137 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Y + + V+ E FY+GF Sbjct: 138 WTEENAEVQRKAKIIQSYYC---------------GDDPLKRKIASVMLESFLFYSGFYL 182 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L+ +K+ A+ + I+RDE++H + + E ++ + +L++ Sbjct: 183 PLNWSVHSKLTNTADIIRLIIRDEAVHGYYIGYKYQVGLRDESQQRQDELKEHAFDLLYD 242 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI Y + +G ++++++ AN+ + +G E LF E +P S Sbjct: 243 LYDNEIQYTEDLY--DPLGWT-EDVKRFLRYNANKALNNLGYEGLFPVDETRVSPAILAS 299 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 300 LAPNADENHDFFSGSGSSYVIGKAEDTQDDDWD 332 >gi|225628773|ref|ZP_03786807.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti str. Cudo] gi|237817303|ref|ZP_04596295.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus str. 2308 A] gi|225616619|gb|EEH13667.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti str. Cudo] gi|237788116|gb|EEP62332.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus str. 2308 A] Length = 335 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 57/325 (17%), Positives = 115/325 (35%), Gaps = 29/325 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W++ L E+ + R Sbjct: 26 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 79 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ + + P L +F EAVH+ ++ I ++L L + + Sbjct: 80 TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 139 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ L + L+ V E FY+GF Sbjct: 140 WSEENEFLQRKSTLILDQYHA--------------DDPLKKKI-ASVFLESFLFYSGFYL 184 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 185 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 244 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y + ++++ + AN+ +G E LF NP + Sbjct: 245 LYDNEVRYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 301 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349 + + +FF + Y G + Sbjct: 302 LSPNADENHDFFSGSGSSYVIGKAV 326 >gi|227542806|ref|ZP_03972855.1| ribonucleoside-diphosphate reductase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181432|gb|EEI62404.1| ribonucleoside-diphosphate reductase [Corynebacterium glucuronolyticum ATCC 51866] Length = 335 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 56/333 (16%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P ++P+ +D+ W N L + E++ R Sbjct: 26 NWNEIEDEKDQEVWD---RLTGNFWLPEKIPVSNDIPSW---NTLNETEQIATMRVFTGL 79 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ AF E+VH+ ++ I +L + F Sbjct: 80 TLLDTIQGTVGAVSLIPDAVTHHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 139 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ K L +D D + + + E FY+GF Sbjct: 140 WSEENVNLQRKGEIIL---------------RDYDGKNPYKRKIASTLLESFLFYSGFYL 184 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + +++ E + + + + Sbjct: 185 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQRMQDNLSQAEKDELKDYTYDLTLD 244 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + +G ++++++ AN+ + +G E L+ E +P + Sbjct: 245 LYDNEEQYTEDMYDE--LGWT-EDVKRFLRYNANKALNNLGYEALYPSDETRVSPAILSA 301 Query: 325 EVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + + +FF + Y GA + WD Sbjct: 302 LSPNADENHDFFSGSGSSYVIGAVENTEDADWD 334 >gi|170684037|ref|YP_001744827.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli SMS-3-5] gi|170521755|gb|ACB19933.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli SMS-3-5] Length = 319 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 61/326 (18%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKKLEKISLAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + + + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|206577235|ref|YP_002236984.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] gi|206566293|gb|ACI08069.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella pneumoniae 342] Length = 320 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 117/322 (36%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 11 NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ A+ P L +F EAVH+ ++ I ++L + F Sbjct: 65 TLLDTIQNTVGAPALMADSLTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA L Y Q E L+ V E FY+GF Sbjct: 125 WSESCEPLQRKAQLMLGYYQA--------------DEPLKKKI-ASVFLESFLFYSGFWL 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L + Sbjct: 170 PMHFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+AY+ E + ++ + AN+ +G E LF NP + Sbjct: 230 LYDNELAYSRELYGESGW---FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + + +FF + Y G Sbjct: 287 LSPNADENHDFFSGSGSSYVIG 308 >gi|227488208|ref|ZP_03918524.1| ribonucleoside-diphosphate reductase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091778|gb|EEI27090.1| ribonucleoside-diphosphate reductase [Corynebacterium glucuronolyticum ATCC 51867] Length = 335 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 55/333 (16%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P ++P+ +D+ W + L + E++ R Sbjct: 26 NWNEIEDEKDQEVWD---RLTGNFWLPEKIPVSNDIPSWNT---LNETEQIATMRVFTGL 79 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ AF E+VH+ ++ I +L + F Sbjct: 80 TLLDTIQGTVGAVSLIPDAVTHHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 139 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ K L +D D + + + E FY+GF Sbjct: 140 WSEENVNLQRKGEIIL---------------RDYDGKNPYKRKIASTLLESFLFYSGFYL 184 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + +++ E + + + + Sbjct: 185 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQRMQDNLSQAEKDELKDYTYDLTLD 244 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + +G ++++++ AN+ + +G E L+ E +P + Sbjct: 245 LYDNEEQYTEDMYDE--LGWT-EDVKRFLRYNANKALNNLGYEALYPSDETRVSPAILSA 301 Query: 325 EVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + + +FF + Y GA + WD Sbjct: 302 LSPNADENHDFFSGSGSSYVIGAVENTEDADWD 334 >gi|309786253|ref|ZP_07680881.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella dysenteriae 1617] gi|308925998|gb|EFP71477.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella dysenteriae 1617] Length = 301 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 59/311 (18%), Positives = 116/311 (37%), Gaps = 26/311 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + +N W+P +VP+ +D+ W++ LT E+ + R ++L ++ Sbjct: 1 MWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLLDTLQNVIGAPSL 57 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWA 162 P L +F E VH+ ++ I ++L D + E + KA Sbjct: 58 MPDALTPHEEAVLSNISFMEVVHARSYSSIFSTLCQTKDVDAAYAWSEENALLQRKAQII 117 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Q+ + D + + V E FY+GF + K+ A+ Sbjct: 118 QQHYR-------------GDNPLKKKI--ASVFIESFLFYSGFWLPMYFSSRGKLTNTAD 162 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I+RDE++H + + + +E + + +L E E+ Y E + Sbjct: 163 LIRLIIRDEAVHGYYIGYKYQKSLEKISEAQREELKSFAFDLLLELYDNELQYTDELYAE 222 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETR 339 A + ++ + AN+ +G EPLF NP + + + +FF Sbjct: 223 TPW---ADDVKTFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSGS 279 Query: 340 VTEYQQGAELK 350 + Y G ++ Sbjct: 280 SSSYVMGKAVE 290 >gi|310816082|ref|YP_003964046.1| ribonucleoside-diphosphate reductase, beta subunit [Ketogulonicigenium vulgare Y25] gi|308754817|gb|ADO42746.1| ribonucleoside-diphosphate reductase, beta subunit [Ketogulonicigenium vulgare Y25] Length = 317 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 58/322 (18%), Positives = 116/322 (36%), Gaps = 28/322 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + W +N W+P +VP+ +D+ W S T+ E+ + R Sbjct: 7 NWNRIADDRDLEIWN---RLTSNFWLPEKVPLSNDIQSWSSF---TEAEKQLTIRVFTGL 60 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + A+ + P F EAVH+ ++ I ++L + E F Sbjct: 61 TLLDTIQSKAGAPALMKDALTPHEEAVFANICFMEAVHARSYSSIFSTLCTTVEIDEAFR 120 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA D + V E FY+GF Sbjct: 121 WAELNKDLQRKAKLIEACY--------------TDDTQPLKKKIASVFLESFMFYSGFYL 166 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L ++ A+ + I++DE++H + P +E + + +L + Sbjct: 167 PLHWASRARLTNTADLIRLIIKDEAVHGYYIGYKFQLGYALLPEAEKEELKGFAYDLLLQ 226 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 +E +YA + + +Q++ + AN+ +G +P+F NP + Sbjct: 227 LYEIECSYAADLYDGIGL---TEDVKQFLHYNANKSLMNLGFDPIFPDEITNFNPAVLAA 283 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 D + +FF + Y G Sbjct: 284 LAPDANENHDFFSGSGSSYVIG 305 >gi|261404531|ref|YP_003240772.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10] gi|261280994|gb|ACX62965.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10] Length = 343 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 146/341 (42%), Gaps = 19/341 (5%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + N + + S + ++ ++ Y NHW+ E+PM D + Sbjct: 9 TEAPNRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQQF---PR 65 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L +E+ K N+ A +S+ V + R+ ++ +E VH+ ++ Y Sbjct: 66 LDPEEQRTFKINISLLAVLDSMQTM-FVSDVKRYFTDSSLEAISAIIGQQEVVHNQSYSY 124 Query: 134 IITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 +++S+ ++ E+F ++ P + + + Q + + + V Sbjct: 125 VLSSIVSEQEQKEIFEYWKHDPVLLERNQFISNIYQNFRD--------NPSPQSFFEAMV 176 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 ++ EG++FY+ FA +L R KM+ ++ YI RDE+ H F +V Q+ + P Sbjct: 177 ADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQLLKDFPE 236 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L TKE + A LE +AH T+ G++ Y+++IANRR +GLE Sbjct: 237 LNTKENIDYLYRTIDRAVELETNWAHYTLSN-VRGIDLNELSDYIKYIANRRITMMGLEK 295 Query: 312 LFKYTE-NPFPWMSEVID---LKKEKNFFETRVTEYQQGAE 348 ++ + N PW+ D + +FFE + Y + + Sbjct: 296 AYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGD 336 >gi|195953600|ref|YP_002121890.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1] gi|195933212|gb|ACG57912.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1] Length = 319 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 170/334 (50%), Gaps = 15/334 (4%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + V K +S +L + Y Y A NN+W+P E + +D + Sbjct: 1 MSYNTAVDEVIKKDGKVCQSYTYKLDSVVYPEILNLYTKAKNNYWIPEEYDLANDKHEF- 59 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L D ER + +GFF+S+E V NI+ I + + N E R +L Q EE H Sbjct: 60 -YEKLNDIERHYMLHTVGFFSSAEGWVGQNILE-ISKRIRNTETRMFLGYQLMEEMKHID 117 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 TF+YI+ L L E++ M+ V I KA++ ++ L ++ ++D+ Sbjct: 118 TFRYIMDGLDLKPHEVYAMHENVKEIKRKADFEVKRAMALCEEP-------TEENLIEDI 170 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 FV+Y + EG++F++GF L+ GR + +A ++I++DE+ HL FGI ++N++ + Sbjct: 171 FVYYAILEGLFFFSGFVTPLAFGRRGVLKNVAALVRWILKDETRHLAFGIYLLNELLKDK 230 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 +++ K R ++ EA +E YA MP+ +GL+ + Y++++A+RR +G Sbjct: 231 NK---NDYKDKFRVLMEEAVDIETEYARVAMPEKIIGLSFETYTSYVKYLADRRMRSLGF 287 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 + ++ +NP W++ DL NFFE +V +Y Sbjct: 288 DAIYGQ-KNPMKWLTTQTDLPDLTNFFEAKV-DY 319 >gi|323188442|gb|EFZ73728.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli RN587/1] Length = 319 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + E L+ V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYRG--------------DEPLKKKI-ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + + + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|241206478|ref|YP_002977574.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860368|gb|ACS58035.1| Ribonucleoside-diphosphate reductase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 324 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 119/333 (35%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + + + L +F EAVH+ ++ I ++L D + + Sbjct: 69 TLLDTIQNGVGSIRLMEDAATSHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + K+ ++ ++ + L+ V E FY+GF Sbjct: 129 WSEENEFLQRKSALIMEQYRS--------------GDPLKKKV-ASVFLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLGDERKQEIKDFAFELLLE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + ++++ + AN+ +G E LF NP + Sbjct: 234 LYDNEAKYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323 >gi|260579705|ref|ZP_05847564.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium jeikeium ATCC 43734] gi|258602135|gb|EEW15453.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium jeikeium ATCC 43734] Length = 331 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 122/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P +VP+ +D+ W + L D E+ R Sbjct: 22 NWNSIPDEKDLEVWD---RLTANFWLPEKVPLSNDVPSWST---LNDMEKQATMRVFTGL 75 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + + P +F E+VH+ ++ I +L + F Sbjct: 76 TMLDTIQGTVGAVKLIEDAATPHEEAVFTNISFMESVHAKSYSSIFMTLASTPEINDAFR 135 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L + + D + + V+ E FY+GF Sbjct: 136 WSEENEKLQNKAKIILDFY-------------EGDDPMKKKI--ASVLLESFLFYSGFYL 180 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDES+H + + +E ++ + +L E Sbjct: 181 PMYWSSHAKLTNTADIIRLIIRDESVHGYYIGYKYQRALENETPERQEELKEHTFDLLLE 240 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + +G ++++++ AN+ + +G E LF E +P + Sbjct: 241 LYDNEAQYTEDLYDE--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETRVSPAILSA 297 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + +FF + Y G + WD Sbjct: 298 LNPGGDENHDFFSGSGSSYVIGKAENTVDDDWD 330 >gi|161502142|ref|YP_001569254.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863489|gb|ABX20112.1| hypothetical protein SARI_00165 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 319 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 57/323 (17%), Positives = 115/323 (35%), Gaps = 26/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LNAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQSKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P + KA + + E L+ V E FY+GF + Sbjct: 127 ENPQLQRKAQIMMTHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKQSAIEREELKLFALDLLMELYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 E Y + + ++ + AN+ +G E LF NP + Sbjct: 232 NETRYTEALYAE---TDWVDDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 289 NADENHDFFSGSGSSYVMGKAVE 311 >gi|16130590|ref|NP_417162.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. MG1655] gi|74313247|ref|YP_311666.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei Ss046] gi|89109469|ref|AP_003249.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli str. K-12 substr. W3110] gi|157162127|ref|YP_001459445.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli HS] gi|170019072|ref|YP_001724026.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli ATCC 8739] gi|170082262|ref|YP_001731582.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. DH10B] gi|188492563|ref|ZP_02999833.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 53638] gi|193065983|ref|ZP_03047042.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E22] gi|193070996|ref|ZP_03051924.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E110019] gi|194427830|ref|ZP_03060376.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B171] gi|194439440|ref|ZP_03071516.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 101-1] gi|209920120|ref|YP_002294204.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli SE11] gi|218696273|ref|YP_002403940.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 55989] gi|238901820|ref|YP_002927616.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli BW2952] gi|256019542|ref|ZP_05433407.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] gi|256024812|ref|ZP_05438677.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 4_1_40B] gi|260845324|ref|YP_003223102.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O103:H2 str. 12009] gi|293448994|ref|ZP_06663415.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|300906827|ref|ZP_07124508.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 84-1] gi|300916824|ref|ZP_07133528.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 115-1] gi|300922750|ref|ZP_07138839.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 182-1] gi|300930529|ref|ZP_07145925.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 187-1] gi|300949072|ref|ZP_07163119.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 116-1] gi|300957447|ref|ZP_07169660.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 175-1] gi|301026690|ref|ZP_07190101.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 196-1] gi|301306007|ref|ZP_07212087.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 124-1] gi|301327384|ref|ZP_07220633.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 78-1] gi|301645345|ref|ZP_07245292.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 146-1] gi|307139368|ref|ZP_07498724.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli H736] gi|307314435|ref|ZP_07594040.1| Ribonucleoside-diphosphate reductase [Escherichia coli W] gi|312973113|ref|ZP_07787286.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 1827-70] gi|331643364|ref|ZP_08344495.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H736] gi|331669414|ref|ZP_08370260.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA271] gi|331678654|ref|ZP_08379328.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H591] gi|332280666|ref|ZP_08393079.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] gi|2507306|sp|P37146|RIR4_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta; AltName: Full=R2F protein; AltName: Full=Ribonucleotide reductase 2 gi|303325061|pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli gi|303325062|pdb|3N38|A Chain A, Ribonucleotide Reductase Nrdf From Escherichia Coli Soaked With Ferrous Ions gi|303325063|pdb|3N39|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Nrdi gi|303325065|pdb|3N39|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Nrdi gi|303325067|pdb|3N3A|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Reduced Nrdi gi|303325069|pdb|3N3A|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Reduced Nrdi gi|303325071|pdb|3N3B|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Reduced Nrdi With A Trapped Peroxide gi|303325073|pdb|3N3B|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli In Complex With Reduced Nrdi With A Trapped Peroxide gi|1789031|gb|AAC75723.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. MG1655] gi|1800064|dbj|BAA16541.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli str. K12 substr. W3110] gi|73856724|gb|AAZ89431.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Shigella sonnei Ss046] gi|157067807|gb|ABV07062.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli HS] gi|169754000|gb|ACA76699.1| Ribonucleoside-diphosphate reductase [Escherichia coli ATCC 8739] gi|169890097|gb|ACB03804.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli str. K-12 substr. DH10B] gi|188487762|gb|EDU62865.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 53638] gi|192926397|gb|EDV81032.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E22] gi|192955654|gb|EDV86129.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E110019] gi|194414063|gb|EDX30339.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B171] gi|194421616|gb|EDX37627.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli 101-1] gi|209762244|gb|ACI79434.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|209913379|dbj|BAG78453.1| ribonucleoside-diphosphate reductase beta subunit [Escherichia coli SE11] gi|218353005|emb|CAU98821.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli 55989] gi|238863480|gb|ACR65478.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli BW2952] gi|257760471|dbj|BAI31968.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O103:H2 str. 12009] gi|291322084|gb|EFE61513.1| ribonucleoside-diphosphate reductase [Escherichia coli B088] gi|299879612|gb|EFI87823.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 196-1] gi|300315803|gb|EFJ65587.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 175-1] gi|300401428|gb|EFJ84966.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 84-1] gi|300415890|gb|EFJ99200.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 115-1] gi|300420935|gb|EFK04246.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 182-1] gi|300451458|gb|EFK15078.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 116-1] gi|300461585|gb|EFK25078.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 187-1] gi|300838718|gb|EFK66478.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 124-1] gi|300846038|gb|EFK73798.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 78-1] gi|301076379|gb|EFK91185.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 146-1] gi|306906003|gb|EFN36524.1| Ribonucleoside-diphosphate reductase [Escherichia coli W] gi|309703041|emb|CBJ02373.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli ETEC H10407] gi|310333055|gb|EFQ00269.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 1827-70] gi|315061957|gb|ADT76284.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli W] gi|315254452|gb|EFU34420.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 85-1] gi|315615063|gb|EFU95700.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 3431] gi|320198428|gb|EFW73030.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli EC4100B] gi|320656721|gb|EFX24609.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662264|gb|EFX29661.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O55:H7 str. USDA 5905] gi|320667315|gb|EFX34273.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. LSU-61] gi|323173041|gb|EFZ58672.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli LT-68] gi|323183202|gb|EFZ68599.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 1357] gi|323377462|gb|ADX49730.1| Ribonucleoside-diphosphate reductase [Escherichia coli KO11] gi|323935630|gb|EGB31947.1| ribonucleotide reductase [Escherichia coli E1520] gi|323946352|gb|EGB42381.1| ribonucleotide reductase [Escherichia coli H120] gi|323960578|gb|EGB56205.1| ribonucleotide reductase [Escherichia coli H489] gi|323971479|gb|EGB66714.1| ribonucleotide reductase [Escherichia coli TA007] gi|324020305|gb|EGB89524.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 117-3] gi|324120035|gb|EGC13912.1| ribonucleotide reductase [Escherichia coli E1167] gi|331036835|gb|EGI09059.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H736] gi|331063082|gb|EGI34995.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA271] gi|331073484|gb|EGI44805.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H591] gi|332103018|gb|EGJ06364.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9] gi|332344558|gb|AEE57892.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli UMNK88] Length = 319 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|304398691|ref|ZP_07380563.1| Ribonucleoside-diphosphate reductase [Pantoea sp. aB] gi|304353902|gb|EFM18277.1| Ribonucleoside-diphosphate reductase [Pantoea sp. aB] Length = 326 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 120/326 (36%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +DL W++ L ++ + R Sbjct: 17 NWNRIQDEKDLEVWN---RLTSNFWLPEKVPLSNDLPAWQT---LDKQQQQLTIRVFTGL 70 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + P L +F EAVH+ ++ I ++L D + Sbjct: 71 TLLDTIQNVIGAPGLMDDAITPHEEAVLSNISFMEAVHARSYSSIFSTLCNTQDVDAAYQ 130 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L++ + + L+ V E FY+GF Sbjct: 131 WSEENVPLQNKARIILEHYRA--------------NDPLKKKI-ASVFLESFLFYSGFWL 175 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + Q L +E QQ + +L Sbjct: 176 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQALATADDLRREELQQFAYDLLLA 235 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324 E+AY VG + ++ + AN+ +G E LF NP + Sbjct: 236 LYENEVAYTEALYAD--VGW-VEEVKTFLHYNANKALMNLGYEALFPAELTAVNPAILSA 292 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 293 LSPNADENHDFFSGSGSSYVMGKAVE 318 >gi|300941043|ref|ZP_07155562.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 21-1] gi|300454207|gb|EFK17700.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 21-1] Length = 319 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKNFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|312965591|ref|ZP_07779821.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 2362-75] gi|312289740|gb|EFR17630.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 2362-75] Length = 319 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + + Y G ++ Sbjct: 286 LSPNADENHDFFSSSGSSYVMGKAVE 311 >gi|68535550|ref|YP_250255.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium jeikeium K411] gi|68263149|emb|CAI36637.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium jeikeium K411] Length = 331 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 122/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P +VP+ +D+ W + L D E+ R Sbjct: 22 NWNSIPDEKDLEVWD---RLTANFWLPEKVPLSNDVPSWST---LNDMEKQATMRVFTGL 75 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + + P +F E+VH+ ++ I +L + F Sbjct: 76 TMLDTIQGTVGAVKLIEDAATPHEEAVFTNISFMESVHAKSYSSIFMTLASTPEINDAFR 135 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L + + D + + V+ E FY+GF Sbjct: 136 WSEENEKLQNKAKIILDFY-------------EGDDPMKKKI--ASVLLESFLFYSGFYL 180 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDES+H + + +E ++ + +L E Sbjct: 181 PMYWSSHAKLTNTADIIRLIIRDESVHGYYIGYKYQRALENETPERQEELKEHTFDLLLE 240 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + + +G ++++++ AN+ + +G E LF E +P + Sbjct: 241 LYDNEAQYTEDLYDE--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETRVSPAILSA 297 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + +FF + Y G + WD Sbjct: 298 LNPGGDENHDFFSGSGSSYVIGKAENTVDDDWD 330 >gi|323941488|gb|EGB37671.1| ribonucleotide reductase [Escherichia coli E482] Length = 319 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ +W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPVWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|237729635|ref|ZP_04560116.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp. 30_2] gi|226908241|gb|EEH94159.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp. 30_2] Length = 319 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 63/332 (18%), Positives = 119/332 (35%), Gaps = 26/332 (7%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 M +R ++ E + +N W+P +VP+ +D+ W++ L E+ + Sbjct: 1 MTLSRVSAINWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LNAAEQQLTI 57 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LD 141 R +++ A+ P L +F EAVH+ ++ I ++L D Sbjct: 58 RVFTGLTLLDTIQNVAGAPALMADSLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKD 117 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E + KA L + A E L+ V E F Sbjct: 118 VDAAYAWSEENTPLQRKAQIVLTHY--------------ASDEPLKKKI-ASVFLESFLF 162 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF + K+ A+ + I+RDE++H + + +E + + Sbjct: 163 YSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEHISESAREELKNFA 222 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTEN 318 +L E E Y E + G + ++ + AN+ +G E LF N Sbjct: 223 FDLLMELYDNEARYTEELYAE--TGW-VDDVKAFLCYNANKALMNLGYEALFPPEMAEVN 279 Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 P + + + +FF + Y G ++ Sbjct: 280 PTILAALSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|26249071|ref|NP_755111.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli CFT073] gi|227888210|ref|ZP_04006015.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 83972] gi|300986153|ref|ZP_07177743.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 45-1] gi|301050518|ref|ZP_07197394.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 185-1] gi|26109478|gb|AAN81681.1|AE016765_83 Ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli CFT073] gi|227834850|gb|EEJ45316.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 83972] gi|300297774|gb|EFJ54159.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 185-1] gi|300407907|gb|EFJ91445.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 45-1] gi|307554652|gb|ADN47427.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli ABU 83972] gi|315290985|gb|EFU50350.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 153-1] Length = 319 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 121/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAILSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVTAFLCYNANKALMNLGYEPLFPAGMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|312137650|ref|YP_004004986.1| ribonucleoside-diphosphate reductase beta subunit nrdf [Rhodococcus equi 103S] gi|311886989|emb|CBH46298.1| ribonucleoside-diphosphate reductase beta subunit NrdF [Rhodococcus equi 103S] Length = 322 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 70/322 (21%), Positives = 122/322 (37%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P ++P+ +DLA W + LTD ER M R Sbjct: 13 NWNRVPDPKDAEVWD---RLTGNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGL 66 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++ A +A+ P L AF E+VH+ ++ I ++L F Sbjct: 67 TLLDTAQATVGAVAMIADAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTRQIDAAFE 126 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + Y + + V+ E FY+GF Sbjct: 127 WSERNPHLQRKAQIVVDYYR---------------GDDALARKAASVMLESFLFYSGFYL 171 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + ++ A+ + I+RDE++H + + ++ + +L Sbjct: 172 PMYWASHGELTNTADLIRLIIRDEAVHGYYIGYKCRKALERLDASARDAHRRYTYDLLET 231 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+AYA + + VG A YM+F AN+ +G EP+F +E NP + Sbjct: 232 LYANEVAYAADLYDE--VGWTAEVVS-YMRFNANKALANLGYEPMFPVSECQVNPAILSA 288 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 289 LDPGAGENHDFFSGSGSAYVIG 310 >gi|331684294|ref|ZP_08384886.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H299] gi|331077909|gb|EGI49115.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli H299] Length = 319 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 121/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIHLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|157148214|ref|YP_001455533.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter koseri ATCC BAA-895] gi|157085419|gb|ABV15097.1| hypothetical protein CKO_04025 [Citrobacter koseri ATCC BAA-895] Length = 319 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 116/323 (35%), Gaps = 26/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ A+ + P L +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNIAGAPALMQDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E + KA LQ+ + + V E FY+GF + Sbjct: 127 ENAPLQRKAQIILQHY---------------TADNPLKKKIASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + E + + +L E Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKLSESERDELKHFALDLLMELYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 E Y E + G ++ + AN+ +G E LF NP + Sbjct: 232 NESRYTEELYAE--TGW-VADVNAFLCYNANKALMNLGYEALFPAEMAEVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 289 NADENHDFFSGSGSSYVMGKAIE 311 >gi|15803196|ref|NP_289228.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 EDL933] gi|15832793|ref|NP_311566.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. Sakai] gi|168750919|ref|ZP_02775941.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|168755421|ref|ZP_02780428.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|168762471|ref|ZP_02787478.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|168768767|ref|ZP_02793774.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|168774792|ref|ZP_02799799.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|168778658|ref|ZP_02803665.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|168787931|ref|ZP_02812938.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC869] gi|168800561|ref|ZP_02825568.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC508] gi|195938430|ref|ZP_03083812.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. EC4024] gi|208808703|ref|ZP_03251040.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208813382|ref|ZP_03254711.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208819985|ref|ZP_03260305.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209400851|ref|YP_002272142.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|217327155|ref|ZP_03443238.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|254794623|ref|YP_003079460.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. TW14359] gi|261225973|ref|ZP_05940254.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256769|ref|ZP_05949302.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli O157:H7 str. FRIK966] gi|12517115|gb|AAG57786.1|AE005496_9 ribonucleoside-diphosphate reductase 2, beta chain [Escherichia coli O157:H7 str. EDL933] gi|13363010|dbj|BAB36962.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli O157:H7 str. Sakai] gi|187769524|gb|EDU33368.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188015002|gb|EDU53124.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|189003218|gb|EDU72204.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189357305|gb|EDU75724.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189362069|gb|EDU80488.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189367242|gb|EDU85658.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|189372097|gb|EDU90513.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC869] gi|189377142|gb|EDU95558.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC508] gi|208728504|gb|EDZ78105.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208734659|gb|EDZ83346.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208740108|gb|EDZ87790.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209162251|gb|ACI39684.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|209762240|gb|ACI79432.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|209762242|gb|ACI79433.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|209762246|gb|ACI79435.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|217319522|gb|EEC27947.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|254594023|gb|ACT73384.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Escherichia coli O157:H7 str. TW14359] gi|320189007|gb|EFW63666.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. EC1212] gi|320640665|gb|EFX10201.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. G5101] gi|326338609|gb|EGD62435.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. 1044] gi|326342863|gb|EGD66631.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H7 str. 1125] Length = 319 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|255928974|ref|YP_003097286.1| ribonucleotide reductase B subunit [Synechococcus phage S-RSM4] gi|255705260|emb|CAR63249.1| ribonucleotide reductase B subunit [Synechococcus phage S-RSM4] Length = 394 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 79/362 (21%), Positives = 138/362 (38%), Gaps = 27/362 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + + K V + KY + W P EV +Q D A ++ Sbjct: 21 VFNTTQLDSTKQKMFFGPPLGVQRYDKFKYPVFDKLTQQQLGYFWRPEEVSLQKDRADYQ 80 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L D ++ + NL + +S+ +A + S PE + E VHS Sbjct: 81 ---VLNDAQKHIFTSNLKYQILLDSVQGRGPGMAFMPYCSLPELEGAMNIWQTMEMVHSR 137 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWAL-----------------QYTQTLSSP 172 ++ +II ++ D ++F+ + I ++A Q+ L Sbjct: 138 SYTHIIKNVYADPSDVFDKILDDEKILSRAKSVTHAYDEFLRAAQEWGAGKQWEHALEGV 197 Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 + + L + EG+ FY FA + G + G A+ I RDES Sbjct: 198 DNAIWELNDLKRKLYRAVANVYILEGIRFYVSFACSFAFGELKLLEGSAKIIGLIARDES 257 Query: 233 LHLNFGIDVINQIKI-ENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 H+ +++N+ K ++P + KE ++ M + E +A G +GLN Sbjct: 258 QHMTITQNILNKWKEGDDPEMVQIAKEEEENVYDMFRQCVEEEKLWAEYLFKDGSIIGLN 317 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQ 345 +Y+++ ANRR IGL+ +F + NP PW + K + ET V Y Sbjct: 318 DKLLSKYVEWTANRRLKSIGLKAIFDTPVSNNPLPWTEHWLSSKGMQVAPQETEVESYLI 377 Query: 346 GA 347 G+ Sbjct: 378 GS 379 >gi|191167101|ref|ZP_03028922.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B7A] gi|260856787|ref|YP_003230678.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O26:H11 str. 11368] gi|309795135|ref|ZP_07689554.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|331664233|ref|ZP_08365139.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA143] gi|190902883|gb|EDV62611.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli B7A] gi|257755436|dbj|BAI26938.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O26:H11 str. 11368] gi|308121106|gb|EFO58368.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|323154887|gb|EFZ41079.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli EPECa14] gi|331058164|gb|EGI30145.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA143] Length = 319 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|218701171|ref|YP_002408800.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli IAI39] gi|218371157|emb|CAR18988.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli IAI39] Length = 319 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLTNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|187734239|ref|YP_001881572.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii CDC 3083-94] gi|187431231|gb|ACD10505.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella boydii CDC 3083-94] Length = 319 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETSW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|253772463|ref|YP_003035294.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162613|ref|YP_003045721.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli B str. REL606] gi|297519661|ref|ZP_06938047.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli OP50] gi|242378238|emb|CAQ33013.1| nrdF, subunit of ribonucleoside-diphosphate reductase 2, beta subunit dimer and ribonucleoside-diphosphate reductase 2 [Escherichia coli BL21(DE3)] gi|253323507|gb|ACT28109.1| Ribonucleoside-diphosphate reductase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974514|gb|ACT40185.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli B str. REL606] gi|253978681|gb|ACT44351.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli BL21(DE3)] Length = 319 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G +PLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYKPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|320173468|gb|EFW48667.1| ribonucleotide-diphosphate reductase subunit beta [Shigella dysenteriae CDC 74-1112] Length = 319 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKNFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|110642801|ref|YP_670531.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli 536] gi|191171432|ref|ZP_03032981.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli F11] gi|300990601|ref|ZP_07179251.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 200-1] gi|110344393|gb|ABG70630.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli 536] gi|190908366|gb|EDV67956.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli F11] gi|300305718|gb|EFJ60238.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 200-1] gi|324014406|gb|EGB83625.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 60-1] Length = 319 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 61/326 (18%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + + L+ V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYRG--------------DDPLKKKIT-SVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQEQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + + + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|260869355|ref|YP_003235757.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O111:H- str. 11128] gi|257765711|dbj|BAI37206.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia coli O111:H- str. 11128] gi|323180097|gb|EFZ65649.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli 1180] Length = 319 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y +E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTNELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|310641424|ref|YP_003946182.1| ribonucleoside-diphosphate reductase beta chain [Paenibacillus polymyxa SC2] gi|309246374|gb|ADO55941.1| Ribonucleoside-diphosphate reductase beta chain [Paenibacillus polymyxa SC2] Length = 321 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 68/310 (21%), Positives = 122/310 (39%), Gaps = 23/310 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+P+ DD W + L+D E+ + LG +++ + I Sbjct: 20 FWNQNIMQFWTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQI 76 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + L A E +H+ ++ I T+L E +F E P + KA Sbjct: 77 MEHVDGLQRKAVLSFMAMMEQIHAKSYSSIFTTLASTEEIDGVFRWVEENPHLQTKAETI 136 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 QY + +P + L V+ E FY+GF L L K+ E Sbjct: 137 RQYYMNIHTP-----------KDLYLAMAASVLLESYLFYSGFFYPLYLAGQGKLTCSGE 185 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-P 281 I+RDES+H + + +I E ++ Q +L E Y + P Sbjct: 186 IIDLILRDESIHGVYVGVLAQEIYAELDEEEQRDLYQTLVGLLRYLHNNEEQYTEQIYAP 245 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 G V + ++++ AN+ +G +PLF+ E NP + + + K+ +FF + Sbjct: 246 IGLV----DDVKVFLRYNANKAMMNLGFDPLFEEEEVNPIVF-NGISTHTKQHDFFSKKG 300 Query: 341 TEYQQGAELK 350 Y + ++ Sbjct: 301 NGYVRAMNVE 310 >gi|325677552|ref|ZP_08157215.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] gi|325551623|gb|EGD21322.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] Length = 322 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 71/322 (22%), Positives = 123/322 (38%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ N W+P ++P+ +DLA W + LTD ER M R Sbjct: 13 NWNRVPDPKDAEVWD---RLTGNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGL 66 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++ A +A+ P L AF E+VH+ ++ I ++L F Sbjct: 67 TLLDTAQATVGAVAMIADAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTRQIDAAFE 126 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + Y + + V+ E FY+GF Sbjct: 127 WSERNPHLQRKAQIVVDYYR---------------GDDALARKAASVMLESFLFYSGFYL 171 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + ++ + +L Sbjct: 172 PMYWASHGKLTNTADLIRLIIRDEAVHGYYIGYKCRKALERLDASARDAHRRYTYALLET 231 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+AYA + + VG A YM+F AN+ +G EP+F+ +E NP + Sbjct: 232 LYANEVAYAADLYDE--VGWTAEVVS-YMRFNANKALANLGYEPMFRASECQVNPAILSA 288 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 289 LDPGAGENHDFFSGSGSAYVIG 310 >gi|323966928|gb|EGB62356.1| ribonucleotide reductase [Escherichia coli M863] gi|327251394|gb|EGE63080.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli STEC_7v] Length = 319 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDNPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISMAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAE---TTWADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|331658787|ref|ZP_08359729.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA206] gi|315298701|gb|EFU57955.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 16-3] gi|331053369|gb|EGI25398.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli TA206] Length = 319 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLLPDTLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFASRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|283835589|ref|ZP_06355330.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter youngae ATCC 29220] gi|291068801|gb|EFE06910.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter youngae ATCC 29220] Length = 319 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 120/326 (36%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNRIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ A+ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTIQNIVGAPALMADSITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTTDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L + A LQ V E FY+GF Sbjct: 124 WSEENNPLQRKAQIILAHY--------------ASDNPLQKKI-ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLAHISESAREELKNFALDLLME 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E Y E + G A + ++ + AN+ +G E LF NP + Sbjct: 229 LYDNEAQYTDELYAE--TGW-ADDVKAFLCYNANKALMNLGYEALFPPEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + ++ +FF + Y G ++ Sbjct: 286 LSPNAEENHDFFSGSGSSYVMGKAVE 311 >gi|33519930|ref|NP_878762.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Blochmannia floridanus] gi|33504276|emb|CAD83168.1| ribonucleoside-diphosphate reductase 1 beta chain [Candidatus Blochmannia floridanus] Length = 376 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 76/351 (21%), Positives = 139/351 (39%), Gaps = 39/351 (11%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 NN L P+ G+ V+ R + + + + + W P E+ + Sbjct: 10 KNNQLLEPMFFGQP---VNIARFDQQKHIIFE----------KLIEKQLSFFWRPEEIDI 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D ++S L + E+ + NL + +S+ + +A+ +S PE ++ + Sbjct: 57 SKDRIDYQS---LPNHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELETWVETWS 113 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------- 170 F E +HS ++ +II ++ +F+ I +A Y L Sbjct: 114 FFETIHSRSYTHIIRNIVNHPSVIFDDIVTNKEILKRAKDISMYYDDLIKLTNYYYTLGI 173 Query: 171 ------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 + + T + ++ L V E + FY FA + M G A+ Sbjct: 174 GKHRVNNTTITVNLHELKKKLYLCLISVNV-LEAIRFYVSFACSFAFAERELMEGNAKII 232 Query: 225 QYIMRDESLHLNFGIDVINQIK--IENPHLWTKE--FQQKSRTMLHEATLLEIAYAHETM 280 ++I RDESLHLN ++N ++ ++P + Q++S + A E +AH Sbjct: 233 RFIARDESLHLNATQHILNLMRSGSDDPEMVDISLICQEESYNLFLMAAEQEKTWAHYLF 292 Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 G +GLN QY+++I N R IGL+ F N PW++ + Sbjct: 293 KDGSMIGLNKEILCQYIEYITNIRMQAIGLKTPFNTKTNSIPWINAWLSSD 343 >gi|45686047|ref|YP_003810.1| unknown [Ambystoma tigrinum virus] gi|37722471|gb|AAP33216.1| unknown [Ambystoma tigrinum stebbensi virus] Length = 387 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 72/319 (22%), Positives = 132/319 (41%), Gaps = 19/319 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 72 CFKPFRYAWAENIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T K ++ + + L + V+ EG+ + F +L+ Sbjct: 190 EEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R+ KM G+ + ++ +RDE++H+ + + E P + T++ + + LE Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTEDLIELFKEDAERVAELE 296 Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328 A+ + GL + Y+ ++ N R +GL L + P PW+ +ID Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRASNMGLPRLIERAPEACPIPWVKWLID 356 Query: 329 LKKEKNFFETRVTEYQQGA 347 NFFE VTEY+ G Sbjct: 357 GADLTNFFENHVTEYETGG 375 >gi|9628152|ref|NP_042738.1| ribonucleotide reductase small subunit [African swine fever virus] gi|1172939|sp|P42492|RIR2_ASFB7 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|780414|gb|AAA65274.1| ribonucleotide reductase small subunit [African swine fever virus] gi|1097433|prf||2113434AT ribonucleotide reductase:SUBUNIT=small Length = 334 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 80/330 (24%), Positives = 138/330 (41%), Gaps = 30/330 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+++ W Y + W EV M D+ W+ + +R Sbjct: 9 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 65 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D Sbjct: 66 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 125 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F+ + P I A W Q+ D D+ L + V + EG Sbjct: 126 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEG 172 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + F F I L N M G+ ++I RDE +H +F +I+ P + Sbjct: 173 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------E 226 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG---FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + +L EA L + + K G + QY+++ + C + + ++K Sbjct: 227 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 286 Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344 NPFP M++ ++ ++ NFFE R T+YQ Sbjct: 287 -GNPFPQMTKFFLNEVEKTNFFELRPTQYQ 315 >gi|307547024|ref|YP_003899503.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas elongata DSM 2581] gi|307219048|emb|CBV44318.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas elongata DSM 2581] Length = 324 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 56/322 (17%), Positives = 118/322 (36%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W +N W+P ++P+ +D+ W + L D E+ + R Sbjct: 15 NWNRLQDDKDLEVWN---RLTSNFWLPEKIPLSNDVPSWNT---LNDREQQLTIRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ A+ P +F E+VH+ ++ I ++L D + + Sbjct: 69 TLLDTIQGTIGAPALIEDAVTPHEEAVFTNISFMESVHARSYSSIFSTLCATRDVDDAYR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA L+ +T D ++ + V E FY+GF Sbjct: 129 WSEENTHLQNKAELILERYRT-------------DDPLMRKV--ASVFLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + ++ + + +L + Sbjct: 174 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEKESAERQRQIKDTTYDLLLD 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324 E+ Y + + + ++ + AN+ +G E LF P + Sbjct: 234 LYDNEVQYTESLYDEVGL---TEDVKAFLHYNANKALMNLGYEALFPNATEAVDPAILAA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 ++ +FF + Y G Sbjct: 291 LSPGAEENHDFFSGSGSSYVIG 312 >gi|260448266|gb|ACX38688.1| Ribonucleoside-diphosphate reductase [Escherichia coli DH1] gi|315137289|dbj|BAJ44448.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli DH1] Length = 319 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKIFLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|293412034|ref|ZP_06654757.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|291468805|gb|EFF11296.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] Length = 319 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|148244629|ref|YP_001219323.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Vesicomyosocius okutanii HA] gi|146326456|dbj|BAF61599.1| ribonucleoside-diphosphate reductase beta subunit [Candidatus Vesicomyosocius okutanii HA] Length = 378 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 77/345 (22%), Positives = 147/345 (42%), Gaps = 26/345 (7%) Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + M + +V + K+ + + W P E+ + D + L +E+ Sbjct: 16 EPMFFGNTVNVARFDKQKFEIFEKLTEKQLSFFWRPEEIDVSKDKIDFA---KLLPNEKH 72 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + NL + +S+ + + +A +S PE ++ +F E +HS ++ +II ++ Sbjct: 73 IFISNLQYQILLDSVQSRSPNIAFLPIVSLPELENWIETWSFSETIHSRSYTHIIRAIVN 132 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPS----------FTTGTKDA------DQE 184 + G +F+ ++ I +A ++ L + F K+ ++ Sbjct: 133 EPGIVFDDIMKIDEIIQRAESVSKHYNELIKCTQAYLLHGIGKFKVQDKEILIDLYCLKK 192 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L + + E + FY FA + M G A+ + I RDE+LHL ++N Sbjct: 193 QLYLTIMSVNILEAVQFYVSFACSFAFAERKVMEGNAKIIRMIARDEALHLTGTQHILNL 252 Query: 245 I--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299 + ++P + KE +++ TM EA E +A G +GLNA +QY+++I Sbjct: 253 MSDGKDDPDMKKIAKECEKEVITMFKEACEQEKDWAEYLFRDGSMIGLNAKMLKQYLEYI 312 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY 343 N R + L P+F NP PW++ +D + ET +T Y Sbjct: 313 TNVRMKALNLSPVFDECINPLPWINHWLDSDNVQVAPQETEITSY 357 >gi|323978713|gb|EGB73795.1| ribonucleotide reductase [Escherichia coli TW10509] Length = 319 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDNPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISMAQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|168262084|ref|ZP_02684057.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349275|gb|EDZ35906.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 319 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 60/323 (18%), Positives = 118/323 (36%), Gaps = 26/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P + KA L + E L+ V E FY+GF + Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + KE + + +L E Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIERKELKLFALDLLMELYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 EI Y + G + ++ + AN+ +G E LF NP + Sbjct: 232 NEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311 >gi|132618|sp|P26713|RIR2_ASFM2 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 30/330 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+++ W Y + W EV M D+ W+ + +R Sbjct: 2 EELLIENSQRFTIFPIQHPECWNWYKKLESMTWTAQEVDMCKDIDDWE---AMPKPQREF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F+ + P I A W Q+ D + L + V + EG Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPARNSLGERLVGFAAVEG 165 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + F F I L N M G+ ++I RDE +H +F +I+ P + Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------E 219 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG---FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + +L EA L + + K G + QY+++ + C + + ++ Sbjct: 220 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYNV 279 Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344 NPFP M++ ++ ++ NFFE R T+YQ Sbjct: 280 -GNPFPQMTKFFLNEVEKTNFFELRPTQYQ 308 >gi|251797995|ref|YP_003012726.1| ribonucleotide-diphosphate reductase subunit beta [Paenibacillus sp. JDR-2] gi|247545621|gb|ACT02640.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. JDR-2] Length = 318 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 113/304 (37%), Gaps = 21/304 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+P+ DD W ++D ER + K LG +++ + I Sbjct: 17 FWQQNVMQFWTDEEIPLSDDKMDW---MEMSDTERTVYKNVLGGLTLLDTIQGGVGMPKI 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + L + E +H+ ++ I T+L E +F + KA Sbjct: 74 LEHVDGLQRKAVLAFMSMMEQIHAKSYSSIFTTLASTEEIDAIFQWVETNEQLQKKATLV 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + Q + ++ L V E FY+GF L L KM E Sbjct: 134 SSWYQGIE-----------TKQQLYKAMAASVFLESYLFYSGFFYPLYLAGQGKMTSSGE 182 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H + + ++ + + +++ +L+ E+ Y Sbjct: 183 IIDLILRDESIHGLYVGVLAQELFNQFTPEEQAQLKEEVFALLNTLYENEVVYTDNLYSP 242 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + + Y+++ AN+ +G EP F NP + + + K+ +FF + Sbjct: 243 IGLQ---EDVKAYVRYNANKALMNLGFEPYFPEEPVNPIVF-NGISTHTKQHDFFSKKGN 298 Query: 342 EYQQ 345 Y + Sbjct: 299 GYVR 302 >gi|323159821|gb|EFZ45793.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia coli E128010] Length = 319 Score = 216 bits (550), Expect = 5e-54, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 123/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K++ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLINTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|157375444|ref|YP_001474044.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sediminis HAW-EB3] gi|157317818|gb|ABV36916.1| Ribonucleoside-diphosphate reductase [Shewanella sediminis HAW-EB3] Length = 376 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 152/377 (40%), Gaps = 41/377 (10%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + N+ L P+ G VNV +R D K+ + + W P E+ Sbjct: 9 VKNDQLLEPMFLGNS-VNV-------SRYDQQ-----KHVSFEKLIEKQLSFFWRPEEID 55 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D A W+ LT+ E+ + NL + +S+ A ++ + +S PE ++ Sbjct: 56 ISKDRADWQ---RLTESEKHIFISNLKYQTLLDSMAARSVNAVLLPLVSLPEVETWVETW 112 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS---------- 170 AF E +HS ++ +I+ +L + GE+F+ P+I +A +Y + Sbjct: 113 AFSETIHSRSYTHILRNLFTEPGEVFDDIVVNPAILKRATSIAKYFDDVILTTQLLQSQG 172 Query: 171 --SPSFTTGTKDADQEFLQDLFVFYVV----FEGMWFYTGFAQILSLGRANKMVGIAEQY 224 S T + L++ V E + FY FA + + G A+ Sbjct: 173 EGSYEVNGETIEVSARKLKERLYLAVCSVNALEAIRFYVSFACSFAFAERELLEGNAKII 232 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLEIAYAHETM 280 + I RDE+LHL+ ++ N E Q+ R + + E +A Sbjct: 233 KLIARDEALHLSGTQHILKLWANGNDDPEMVEVCQELREAGRQVFLDVVEQEKEWADYLF 292 Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FET 338 G +GLNA +QY+++I+N R IG E F NP PW++ + + E+ Sbjct: 293 KDGSMIGLNAEILKQYIEYISNNRMEAIGYEAPFAIKNNPLPWINTYLVSDNVQVAPQES 352 Query: 339 RVTEY---QQGAELKWD 352 +T Y Q A + D Sbjct: 353 EITSYLVGQVDATVSDD 369 >gi|222081801|ref|YP_002541166.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium radiobacter K84] gi|221726480|gb|ACM29569.1| ribonucleoside-diphosphate reductase [Agrobacterium radiobacter K84] Length = 329 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 58/336 (17%), Positives = 119/336 (35%), Gaps = 30/336 (8%) Query: 20 DDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + KR R+ + N++ K W N W+P +VP+ +D+ W L +E Sbjct: 9 NPKRPEAVRAINWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWA---ALKPEE 62 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + + R +++ + + +F EAVH+ ++ I ++L Sbjct: 63 QQLTIRVFTGLTLLDTIQTSIGAPTLMEDSITSHEEAVYSNISFMEAVHARSYSSIFSTL 122 Query: 139 G--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 D + + E + K+ L+ + + + L+ V Sbjct: 123 CSTPDIDDAYRWSEENEHLQRKSALILEQYR--------------NGDPLKRKI-ASVFL 167 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 E FY+GF + K+ A+ + I+RDE++H + + +E Sbjct: 168 ESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEEGRQE 227 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + + +L E E Y + ++++ + AN+ +G E LF Sbjct: 228 IKDFAFDLLLELYDNEAKYTEALYDGVGL---TEDVKKFLHYNANKALMNLGYEALFPPE 284 Query: 317 E---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NP + + + +FF + Y G + Sbjct: 285 ACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAV 320 >gi|215275538|sp|P0C8I0|RIR2_ASFK5 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 80/330 (24%), Positives = 137/330 (41%), Gaps = 30/330 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+++ W Y + W EV M D+ W+ + +R Sbjct: 2 EELLIEDSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F+ + P I A W Q+ D + L + V + EG Sbjct: 119 EKEQQRIFSGIEKHPIIRKMAQWVQQWM-------------DPVKNSLGERLVGFAAVEG 165 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + F F I L N M G+ ++I RDE +H +F +I+ P + Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYLNNIPE------E 219 Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + +L EA L + K G + QY+++ + C + + ++K Sbjct: 220 KIIHKILKEAVELVDEFISYAFDKARGSVPGFSKEMLFQYIRYFTDNLCFMLQCKSIYKV 279 Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344 ENPFP M++ ++ ++ NFFE R T+YQ Sbjct: 280 -ENPFPQMTKFFLNEVEKTNFFELRPTQYQ 308 >gi|209762238|gb|ACI79431.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli] gi|320646030|gb|EFX15007.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H- str. 493-89] gi|320651330|gb|EFX19761.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli O157:H- str. H 2687] Length = 319 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|162849254|emb|CAN10143.1| Ribonucleotide reductase small subunit [African swine fever virus Benin 97/1] Length = 327 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 80/330 (24%), Positives = 138/330 (41%), Gaps = 30/330 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+++ W Y + W EV M D+ W+ + +R Sbjct: 2 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F+ + P I A W Q+ D D+ L + V + EG Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEG 165 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + F F I L N M G+ ++I RDE +H +F +I+ P + Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------E 219 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG---FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + +L EA L + + K G + QY+++ + C + + ++K Sbjct: 220 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 279 Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344 NPFP M++ ++ ++ NFFE R T+YQ Sbjct: 280 -GNPFPQMTKFFLNEVEKTNFFELRPTQYQ 308 >gi|254037718|ref|ZP_04871776.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 1_1_43] gi|226839342|gb|EEH71363.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp. 1_1_43] Length = 319 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALMPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|16766119|ref|NP_461734.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992529|ref|ZP_02573627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233769|ref|ZP_02658827.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469894|ref|ZP_03075878.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251114|ref|YP_002147708.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204929699|ref|ZP_03220773.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238909579|ref|ZP_04653416.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|585861|sp|P17424|RIR4_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta; AltName: Full=R2F protein; AltName: Full=Ribonucleotide reductase 2 gi|4389108|pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium (Oxidized) gi|4389109|pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium (Oxidized) gi|4389155|pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium gi|4389156|pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium gi|109157246|pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From Salmonella Typhimurium gi|109157247|pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From Salmonella Typhimurium gi|311979|emb|CAA51695.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421357|gb|AAL21693.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194456258|gb|EDX45097.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197214817|gb|ACH52214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204321418|gb|EDZ06618.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205329263|gb|EDZ16027.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332191|gb|EDZ18955.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|261247949|emb|CBG25782.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994924|gb|ACY89809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159373|emb|CBW18891.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913831|dbj|BAJ37805.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223605|gb|EFX48670.1| Ribonucleotide reductase of class Ib aerobic, beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131164|gb|ADX18594.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332989685|gb|AEF08668.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 319 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 118/323 (36%), Gaps = 26/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P + KA L + E L+ V E FY+GF + Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 EI Y + G + ++ + AN+ +G E LF NP + Sbjct: 232 NEIRYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311 >gi|24113980|ref|NP_708490.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 2a str. 301] gi|30064043|ref|NP_838214.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 2a str. 2457T] gi|110806691|ref|YP_690211.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri 5 str. 8401] gi|24053093|gb|AAN44197.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella flexneri 2a str. 301] gi|30042299|gb|AAP18024.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella flexneri 2a str. 2457T] gi|110616239|gb|ABF04906.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella flexneri 5 str. 8401] gi|281602052|gb|ADA75036.1| Ribonucleoside-diphosphate reductase 2, beta chain [Shigella flexneri 2002017] gi|313648326|gb|EFS12770.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri 2a str. 2457T] gi|332753393|gb|EGJ83773.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri 4343-70] gi|332753901|gb|EGJ84276.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri K-671] gi|332755661|gb|EGJ86024.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri 2747-71] gi|332765626|gb|EGJ95839.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Shigella flexneri 2930-71] gi|332999413|gb|EGK18998.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri VA-6] gi|333000691|gb|EGK20268.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri K-218] gi|333015924|gb|EGK35260.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri K-304] Length = 319 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 121/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + N+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNTNKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|168238723|ref|ZP_02663781.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737146|ref|YP_002115764.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712648|gb|ACF91869.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288484|gb|EDY27861.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 319 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 119/323 (36%), Gaps = 26/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P++ KA L + E L+ V E FY+GF + Sbjct: 127 ENPTLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 EI Y + G + ++ + AN+ +G E LF NP + Sbjct: 232 NEIRYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311 >gi|15616797|ref|NP_240009.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681552|ref|YP_002467937.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682108|ref|YP_002468492.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471235|ref|ZP_05635234.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11134533|sp|P57275|RIR2_BUCAI RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|25285834|pir||G84950 ribonucleoside-diphosphate reductase (EC 1.17.4.1) nrdB [imported] - Buchnera sp. (strain APS) gi|10038860|dbj|BAB12895.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621841|gb|ACL29997.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624395|gb|ACL30550.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087074|gb|ADP67154.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 376 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 137/342 (40%), Gaps = 24/342 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + +K + + ++ + KY + + W P E+ + D ++ Sbjct: 5 IFSKKKNNQLKEPMFFGQPVNIARYDQQKYKIFEQLIEKQLSFFWRPEEIDLSRDRIDFQ 64 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 + L D+E+ + NL + +S+ + +A +S PE ++ +F E +HS Sbjct: 65 N---LPDNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPELETWIETWSFSETIHSR 121 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182 ++ +II ++ +F+ +I +A Y L + + G + Sbjct: 122 SYTHIIRNIVNCPSLVFDDIISNKNIYDRAQNISIYYDELINLTSYWHLLGEGIHLINGK 181 Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 ++ L + V E + FY FA + M G A+ + I RDE+L Sbjct: 182 KIHINLRFLKKRLYLCLISVNVLEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEAL 241 Query: 234 HLNFGIDVINQI----KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL ++N + EN E ++++ + A E +A G +GLN Sbjct: 242 HLTGTQHILNLLSNIKNNENMEDVVLECKEEAINIFISAAQQEKKWASYLFKSGSMLGLN 301 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 QY+++I N R H IG + FK NP PW+++ + Sbjct: 302 KDILCQYIEYITNIRMHAIGFKMPFKKQSNPIPWINDWLTSD 343 >gi|323337103|gb|EGA78359.1| Rnr2p [Saccharomyces cerevisiae Vin13] Length = 296 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 18/231 (7%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E FN +P I KA WAL++ Q DAD F + L F E Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVAF-ASIE 239 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 G++F FA I L + M G+ + I RDE LH +F + + + Sbjct: 240 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLFVRPFEEQ 290 >gi|238755711|ref|ZP_04617045.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia ruckeri ATCC 29473] gi|238706078|gb|EEP98461.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia ruckeri ATCC 29473] Length = 323 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 60/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W LT E+ + R Sbjct: 14 NWNRVEDEKDLEVWN---RLTSNFWLPEKVPLSNDIPSWA---MLTAQEKQLTIRVFTGL 67 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + + P +F EAVH+ ++ I ++L + D + + Sbjct: 68 TLLDTIQNTVGAPTLLQDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYR 127 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L + + + V E FY+GF Sbjct: 128 WSEENTTLQKKAQIILNHYH---------------HDDPLKKKIASVFLESFLFYSGFYL 172 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + + +E + + +L + Sbjct: 173 PMYFSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDAVRRQEIKNFTFELLQD 232 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E+ Y E VG + ++++ + AN+ +G E LF E + + Sbjct: 233 LYDNEVRYTEELYDG--VGWS-EDVKKFLHYNANKALMNLGYEALFPANEVTVSAAILSA 289 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAVNTEDDDWD 322 >gi|162849427|emb|CAN10392.1| Ribonucleotide reductase small subunit [African swine fever virus OURT 88/3] gi|291289488|emb|CBH29145.1| BA71V-F334L [African swine fever virus E75] gi|303398729|emb|CBW46710.1| F334L [African swine fever virus Georgia 2007/1] Length = 334 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 80/330 (24%), Positives = 138/330 (41%), Gaps = 30/330 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+++ W Y + W EV M D+ W+ + +R Sbjct: 9 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 65 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D Sbjct: 66 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 125 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F+ + P I A W Q+ D D+ L + V + EG Sbjct: 126 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEG 172 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + F F I L N M G+ ++I RDE +H +F +I+ P + Sbjct: 173 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------E 226 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG---FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + +L EA L + + K G + QY+++ + C + + ++K Sbjct: 227 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 286 Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344 NPFP M++ ++ ++ NFFE R T+YQ Sbjct: 287 -GNPFPQMTKFFLNEVEKTNFFELRPTQYQ 315 >gi|225849393|ref|YP_002729557.1| ribonucleoside-diphosphate reductase subunit beta [Sulfurihydrogenibium azorense Az-Fu1] gi|225644764|gb|ACN99814.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurihydrogenibium azorense Az-Fu1] Length = 326 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 89/309 (28%), Positives = 152/309 (49%), Gaps = 6/309 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY E Y W P E+ +Q D+ +KS LT E+ + +G+FASSE LV Sbjct: 20 KYPVFRELYTKQKKAVWFPEELNIQQDVLDYKS---LTPTEKDLFDSAVGYFASSELLVQ 76 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 N + + L++P + Q F E +HS F+ I+ S +D +++N+ E + Sbjct: 77 NVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNSFDMDRKKIYNITLEDKLLKE 136 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ ++ T + ++ L + + ++ EG++FY+ FA ++ KM Sbjct: 137 KQELIVRAVDRITYGKADPDTLEGKKQILTSILLNNIIQEGLFFYSAFAHFFAMKDTGKM 196 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYA 276 + + I+ DESLHL GI+ I + ENP + F + R + +A LE+ Y Sbjct: 197 KNVVAGVELILIDESLHLQNGIEAILTMVEENPEIVDDYNFVENIRQSIIDAVELELNYL 256 Query: 277 HETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 + G++ E+YM++IA+RR ++G +P F +NP ++ + D+KK NF Sbjct: 257 KTKFGGTTIFGVSYNELERYMKYIADRRLVELGFDPQFGIDQNPLKFLQKE-DVKKLTNF 315 Query: 336 FETRVTEYQ 344 FE TEY Sbjct: 316 FEVSSTEYT 324 >gi|152964774|ref|YP_001360558.1| ribonucleotide-diphosphate reductase subunit beta [Kineococcus radiotolerans SRS30216] gi|151359291|gb|ABS02294.1| Ribonucleoside-diphosphate reductase [Kineococcus radiotolerans SRS30216] Length = 323 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 56/325 (17%), Positives = 117/325 (36%), Gaps = 29/325 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W +N W+P +VP+ +D+ W++ L ER + R Sbjct: 14 NWNRLQDDKDLEIWN---RLTSNFWLPEKVPLSNDVQSWQN---LGAQERTLTLRVFTGL 67 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ P AF E+VH+ ++ I ++L E F Sbjct: 68 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSSIFSTLATTREIDEAFA 127 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + ++ KA+ L+Y + V + E FY+GF Sbjct: 128 WSEDNEALQRKASIVLEYYH---------------GDDPLKRKVASTLLESFLFYSGFFL 172 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + ++ A+ + I+RDE++H + + E + + +L+E Sbjct: 173 PMHFSSRAQLTNTADLVRLIIRDEAVHGYYIGYKFQRGLELVDQAKRDEIKDYAFELLYE 232 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 E Y + + + ++ + AN+ +G E +F +P + Sbjct: 233 LYDNECKYTADLYDGVGL---TEDVKTFLHYNANKALMNLGYEGMFPSDMTKVDPSILSA 289 Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349 + + +FF + Y G + Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAV 314 >gi|224584592|ref|YP_002638390.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469119|gb|ACN46949.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 319 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 118/323 (36%), Gaps = 26/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P + KA L + E L+ V E FY+GF + Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 EI Y + G + ++ + AN+ +G E LF NP + Sbjct: 232 NEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEIADVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311 >gi|322614368|gb|EFY11299.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621567|gb|EFY18420.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624428|gb|EFY21261.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626626|gb|EFY23431.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633514|gb|EFY30256.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638443|gb|EFY35141.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639746|gb|EFY36430.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643792|gb|EFY40342.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649478|gb|EFY45912.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655932|gb|EFY52232.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661327|gb|EFY57552.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662525|gb|EFY58733.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666899|gb|EFY63074.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671269|gb|EFY67392.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677724|gb|EFY73787.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681449|gb|EFY77479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683848|gb|EFY79858.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193763|gb|EFZ78966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197449|gb|EFZ82586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203264|gb|EFZ88293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205210|gb|EFZ90185.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212777|gb|EFZ97588.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218081|gb|EGA02793.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221656|gb|EGA06069.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225124|gb|EGA09375.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230844|gb|EGA14962.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234805|gb|EGA18891.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238844|gb|EGA22894.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241544|gb|EGA25575.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248309|gb|EGA32245.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252925|gb|EGA36759.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256953|gb|EGA40662.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260572|gb|EGA44183.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264370|gb|EGA47876.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269504|gb|EGA52957.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 319 Score = 215 bits (548), Expect = 8e-54, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 117/323 (36%), Gaps = 26/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P + KA L + E L+ V E FY+GF + Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 EI Y + + ++ + AN+ +G E LF NP + Sbjct: 232 NEICYTEALYAE---TDWVNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311 >gi|311977695|ref|YP_003986815.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba polyphaga mimivirus] gi|77416594|sp|Q7T6Y9|RIR2_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|55664859|gb|AAQ09571.2| ribonucleotide reductase small subunit [Acanthamoeba polyphaga mimivirus] gi|308204332|gb|ADO18133.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba polyphaga mimivirus] Length = 417 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 84/331 (25%), Positives = 149/331 (45%), Gaps = 30/331 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +L+ +S+ + P+KY W+ Y N+W EV + D+ W N L+DD+R Sbjct: 98 KEPILSLKSEQYTVHPIKYQKVWDNYKDQMKNYWTVEEVDLAKDVNDWN--NHLSDDDRN 155 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+++ +V NI + + E Q E H + ++T+ Sbjct: 156 FIMHVLAFFAAADGIVNANIKENLIDVVKIKEAECAYGFQYAMENAHGEMYSLMLTTFVK 215 Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D +L N + +PSI KA+W ++ ++ D+ + L F +V E Sbjct: 216 DDALRNKLINSIKTMPSIKKKADWCNKWIKS-------------DKTYAHKLVAFSIV-E 261 Query: 198 GMWFYTGFAQILSLGRANK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 G++F FA I L M G+ Q+I RDE+ H+ + + L + Sbjct: 262 GVFFSGSFASIFWLKTREMHVMPGLIISNQFIARDENKHVELACIMYSL-------LNNR 314 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + ++ EA +E + ++++P +G+N+ QY++++A+R +G F Sbjct: 315 LKESVVYQIIDEAIEIEEEFINDSLPCKLLGMNSELMSQYIKYVADRLLVDLGYRKKFNV 374 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 NPF +M + ID+ + NFFE R Y Sbjct: 375 D-NPFEYMKK-IDVFVKANFFEKRNDAYSNA 403 >gi|94676795|ref|YP_588829.1| ribonucleotide-diphosphate reductase subunit beta [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219945|gb|ABF14104.1| ribonucleoside-diphosphate reductase, beta subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 376 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 70/338 (20%), Positives = 129/338 (38%), Gaps = 24/338 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + +K + + L +V + KY + + W P EV + D ++ Sbjct: 6 FSPKKNNQLLEPMFLGQSVNVVRFDQQKYESFEKLIEKQLSFFWRPEEVDISLDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L E+ + N+ + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPQHEKHIFISNIKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A + L + F G + Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNTEILKRAKDIAAFYDDLIQMTSYFHLFGEGNHSINGKL 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ L + E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VIVNQHELKKKLYLCLMSINALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N +++ E Q S + A E +A G +GLN Sbjct: 243 LAGTQHMLNLMRLGKDDPEMADIALECQHDSYHLFLXAANQEKDWASYLFRDGSMIGLNE 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 QY+++I N R + L+ F NP PW++ + Sbjct: 303 EILCQYIEYITNIRMQAVLLDLPFATRSNPIPWINSWL 340 >gi|62181312|ref|YP_217729.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615703|ref|YP_001589668.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552693|ref|ZP_02346445.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168822877|ref|ZP_02834877.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197265553|ref|ZP_03165627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205353758|ref|YP_002227559.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858077|ref|YP_002244728.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|62128945|gb|AAX66648.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365067|gb|ABX68835.1| hypothetical protein SPAB_03488 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197243808|gb|EDY26428.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205273539|emb|CAR38525.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322691|gb|EDZ10530.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205340791|gb|EDZ27555.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709880|emb|CAR34233.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320087214|emb|CBY96980.1| ribonucleoside-diphosphate reductase beta chain [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322715798|gb|EFZ07369.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326628866|gb|EGE35209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 319 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 118/323 (36%), Gaps = 26/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P + KA L + E L+ V E FY+GF + Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 EI Y + G + ++ + AN+ +G E LF NP + Sbjct: 232 NEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311 >gi|215275539|sp|P0C8I1|RIR2_ASFP4 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 79/330 (23%), Positives = 137/330 (41%), Gaps = 30/330 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+++ W Y + W EV M D+ W+ + +R Sbjct: 2 EELLIENSHRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKSQREF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F+ + P I A W Q+ D + L + V + EG Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPTKNSLGERLVGFAAVEG 165 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + F F I L N M G+ ++I RDE +H +F +I+ P + Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------E 219 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG---FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + +L EA L + + K G + QY+++ + C + + ++K Sbjct: 220 RIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 279 Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344 NPFP M++ ++ ++ NFFE R T+YQ Sbjct: 280 -GNPFPQMTKFFLNEVEKTNFFELRPTQYQ 308 >gi|5230837|gb|AAD41037.1|AF112536_1 ribonucleotide reductase beta-chain [Corynebacterium glutamicum] Length = 334 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 129/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P +VP+ +D+ W + L + E+ R Sbjct: 25 NWNSIPDSKDLEVWD---RLTGNFWLPEKVPVSNDIKSWGT---LNEVEKAATMRVFTGL 78 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ + L AF E+VH+ ++ I +L + + F Sbjct: 79 TLLDTIQGTVGAISLLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLASTAEINDAFR 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y + D + + V+ E FY+GF Sbjct: 139 WSEENENLQRKAKIILSYY-------------EGDDPLKRKI--ASVILESFLFYSGFYL 183 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + +K+ A+ + I+RDE++H + + + +E ++ + +L++ Sbjct: 184 PMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTFDLLYD 243 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y+ + +G ++++++IAN+ + +G E LF E +P + Sbjct: 244 LYDNETQYSEDLYDD--LGWT-EDVKRFLRYIANKALNNLGYEGLFPADETKVSPNILSA 300 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAENTEDDDWD 333 >gi|215275540|sp|P0C8I2|RIR2_ASFWA RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit Length = 327 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 79/330 (23%), Positives = 136/330 (41%), Gaps = 30/330 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L S + P+++ W Y + W EV M D+ W+ + +R Sbjct: 2 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F+ + P I A W Q+ D + L + V + EG Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPTKNSLGERLVGFAAVEG 165 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + F F I L N M G+ ++I RDE +H +F +I+ P + Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------E 219 Query: 259 QKSRTMLHEATLLEIAYAHETMPKG---FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + +L EA L + K G + QY+++ + C + + ++K Sbjct: 220 KIIHKILKEAVELVDEFISYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 279 Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344 NPFP M++ ++ ++ NFFE R T+YQ Sbjct: 280 -GNPFPQMTKFFLNEVEKTNFFELRPTQYQ 308 >gi|315644971|ref|ZP_07898099.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453] gi|315279682|gb|EFU42984.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453] Length = 343 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 75/341 (21%), Positives = 147/341 (43%), Gaps = 19/341 (5%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + N + + S + ++ ++ Y NHW+ E+PM D + + Sbjct: 9 TEAPNRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQQFPT--- 65 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L +E+ K N+ A +S+ V + R+ ++ +E VH+ ++ Y Sbjct: 66 LDSEEQRTFKINISLLAVLDSMQTM-FVSDVKRYFTDSSLEAISAIIGQQEVVHNQSYSY 124 Query: 134 IITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 +++S+ D+ E+F ++ P + + + Q + + + V Sbjct: 125 VLSSIVSDQEQKEIFEYWKHDPVLLERNQFISDIYQNFRD--------NPSPQTFFEAMV 176 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 ++ EG++FY+ FA +L R KM+ ++ YI RDE+ H F +V Q+ + P Sbjct: 177 ADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQLLKDFPE 236 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L ++E + A LE +AH T+ G++ Y+++IANRR +GLE Sbjct: 237 LNSQENIDYLYRTIDRAVELETNWAHYTLSN-VRGIDLNELGDYIKYIANRRITMMGLEK 295 Query: 312 LFKYTE-NPFPWMSEVID---LKKEKNFFETRVTEYQQGAE 348 ++ + N PW+ D + +FFE + Y + + Sbjct: 296 AYQGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGD 336 >gi|311085920|gb|ADP66002.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086491|gb|ADP66572.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087626|gb|ADP67705.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 359 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 70/314 (22%), Positives = 128/314 (40%), Gaps = 24/314 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D +++ L D+E+ + NL + +S+ Sbjct: 16 KYKIFEQLIEKQLSFFWRPEEIDLSRDRIDFQN---LPDNEKHIFISNLKYQTLLDSIQG 72 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A +S PE ++ +F E +HS ++ +II ++ +F+ +I Sbjct: 73 RSPNIAFLPIISIPELETWIETWSFSETIHSRSYTHIIRNIVNCPSLVFDDIISNKNIYD 132 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A Y L + + G + ++ L + V E + F Sbjct: 133 RAQNISIYYDELINLTSYWHLLGEGIHLINGKKIHINLRFLKKRLYLCLISVNVLEAIRF 192 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI----KIENPHLWTKEF 257 Y FA + M G A+ + I RDE+LHL ++N + EN E Sbjct: 193 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHILNLLSNIKNNENMEDVVLEC 252 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++++ + A E +A G +GLN QY+++I N R H IG + FK Sbjct: 253 KEEAINIFISAAQQEKKWASYLFKSGSMLGLNKDILCQYIEYITNIRMHAIGFKMPFKKQ 312 Query: 317 ENPFPWMSEVIDLK 330 NP PW+++ + Sbjct: 313 SNPIPWINDWLTSD 326 >gi|320194816|gb|EFW69445.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli WV_060327] Length = 319 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 61/326 (18%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + + L+ V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYRG--------------DDPLKKKIT-SVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 QMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQEQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + + + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAE--TPWS-DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|168244605|ref|ZP_02669537.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168464072|ref|ZP_02697989.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194442875|ref|YP_002042053.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450827|ref|YP_002046771.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194401538|gb|ACF61760.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409131|gb|ACF69350.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633109|gb|EDX51523.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205336532|gb|EDZ23296.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 319 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 118/323 (36%), Gaps = 26/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P + KA L + E L+ V E FY+GF + Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALNLLMELYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 EI Y + G + ++ + AN+ +G E LF NP + Sbjct: 232 NEIRYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311 >gi|118602534|ref|YP_903749.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567473|gb|ABL02278.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 378 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 76/356 (21%), Positives = 139/356 (39%), Gaps = 25/356 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I + + +V + K+ + + W P E+ + D + Sbjct: 5 IFNKKISNTLIQPMFFGDSMNVTRFDKQKFEIFEKLTEKQLSFFWRPEEIDVSKDKIDF- 63 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 + L +E+ + NL + +S+ +A +S PE ++ +F E +HS Sbjct: 64 --SKLLPNEKHIFVSNLQYQILLDSVQGRAPNIAFLPIVSLPEVENWIETWSFSETIHSR 121 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA-------- 181 ++ +II ++ + G +F+ + I +A A ++ L + Sbjct: 122 SYTHIIRAIINEPGVIFDDIMKTDEIIQRAESASKHYDGLIKYTQAYLLHGTGKLKIQEE 181 Query: 182 --------DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 ++ L + + E + FY FA + M G A+ + I RDE+L Sbjct: 182 EVSIDLYCLKKQLYLTIMSVNILEAVRFYVSFACSFAFAERKVMEGNAKIIKMIARDEAL 241 Query: 234 HLNFGIDVINQIKIENPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL ++N + L +KE Q + TM EA E +A G +GLN Sbjct: 242 HLTGTQHMLNLMSSGKDDLDMQKISKECQDEVITMFREACEQEKDWAEYLFRDGSMIGLN 301 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY 343 A +QY+++I N R + L +F NP PW++ +D + ET +T Y Sbjct: 302 AQILKQYLEYITNVRMKALNLSLIFDECTNPLPWINHWLDSDNVQVAPQETEITSY 357 >gi|58532963|ref|YP_195186.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2] gi|58331430|emb|CAF34216.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2] Length = 394 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 81/359 (22%), Positives = 140/359 (38%), Gaps = 28/359 (7%) Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 + +VN + M V + KY + W P EV +Q D A ++ Sbjct: 24 KNKVNTTKQPMFFGAPLGVQRYDNFKYPVFDKLTQQQLGYFWRPEEVSLQKDRADYQQ-- 81 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L +++ + NL + +S+ +A + S PE + E VHS ++ Sbjct: 82 -LRPEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNIWQTMEMVHSRSYT 140 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA----------- 181 +II ++ D ++F+ I +A + + G ++ Sbjct: 141 HIIKNIYPDPSDVFDQIISDEKILERATSVTKAYDEFLQAAQEWGAGNSWEHALEEVDSA 200 Query: 182 ------DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 + L + EG+ FY FA + G M G A+ I RDES H+ Sbjct: 201 KWELKELKRKLYRAVANVYILEGIRFYVSFACSFAFGENKLMEGNAKIISLIARDESQHM 260 Query: 236 NFGIDVINQIKI-ENPHLWTKEFQQK--SRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291 ++IN+ K ++P + Q++ M + EI +A G +GLNA Sbjct: 261 TITQNIINKWKAGDDPDMVEIAKQEENNVYDMFKKCVEEEIIWADYLFRDGSMIGLNAKL 320 Query: 292 CEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347 ++Y+++ ANRR IG++ +F + NP PW + K + ET V Y G Sbjct: 321 LQKYVEWTANRRMKAIGMKQIFDVPLSNNPLPWTEHWLSSKGLQVAPQETEVESYVIGG 379 >gi|156340310|ref|XP_001620415.1| hypothetical protein NEMVEDRAFT_v1g148226 [Nematostella vectensis] gi|156205304|gb|EDO28315.1| predicted protein [Nematostella vectensis] Length = 224 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 104/243 (42%), Gaps = 26/243 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L D + P+K+ WE Y + W E+ + D+ W + L +DE+ Sbjct: 5 EPILQENKDRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDITDWNT--KLNEDEKYF 62 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E E F+ P+I KA WAL++ ++ + + + + EG Sbjct: 123 EVEKDKLFHAIEVFPAIKRKAEWALKWIES---------------DSFAERLIAFAAVEG 167 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++F F I L + M G+ + I RDE +H +F + + N HL K + Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGVHCDFAVHI------HNHHLINKVPK 221 Query: 259 QKS 261 ++ Sbjct: 222 ERI 224 >gi|145296522|ref|YP_001139343.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium glutamicum R] gi|140846442|dbj|BAF55441.1| hypothetical protein [Corynebacterium glutamicum R] Length = 334 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 128/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P +VP+ +D+ W + L D E+ R Sbjct: 25 NWNSIPDSKDLEVWD---RLTGNFWLPEKVPVSNDIKSWGT---LNDVEKAATMRVFTGL 78 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ + L AF E+VH+ ++ I +L + + F Sbjct: 79 TLLDTIQGTVGAISLLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLASTAEINDAFR 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y + D + + V+ E FY+GF Sbjct: 139 WSEENENLQRKAKIILSYY-------------EGDDPLKRKI--ASVILESFLFYSGFYL 183 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + +K+ A+ + I+RDE++H + + + +E ++ + +L++ Sbjct: 184 PMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTFDLLYD 243 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y+ + +G ++++++ AN+ + +G E LF E +P + Sbjct: 244 LYDNETQYSEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETKVSPNILSA 300 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAENTEDDDWD 333 >gi|198241755|ref|YP_002216784.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197936271|gb|ACH73604.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624542|gb|EGE30887.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 319 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 118/323 (36%), Gaps = 26/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDVAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P + KA L + E L+ V E FY+GF + Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 EI Y + G + ++ + AN+ +G E LF NP + Sbjct: 232 NEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311 >gi|225850104|ref|YP_002730338.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella marina EX-H1] gi|225645787|gb|ACO03973.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella marina EX-H1] Length = 329 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 90/309 (29%), Positives = 154/309 (49%), Gaps = 6/309 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y E Y W P E+ +Q D+ +KS LT E+ + ++G+FASSE LV Sbjct: 23 RYPVFKEIYTKQKKAVWFPEELNIQQDVLDYKS---LTPTEKDLFDTSVGYFASSELLVQ 79 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 N + + L++P + Q F E +HS F+ I+ + +D ++N+ E + Sbjct: 80 NVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNTFEMDRKRIYNITLEDKLLME 139 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ ++ T + ++ L + + ++ EGM+FY+ FA ++ KM Sbjct: 140 KQELIIRAVDRITYGKADPDTLEGKKQILTAILLNNIIQEGMFFYSAFAHFFAMKDTGKM 199 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYA 276 + + I+ DESLHL GI+ I I ENP + E F + + + +A LE+ Y Sbjct: 200 KNVVSGVELILIDESLHLQNGIEAILTIVEENPEIVDDEKFVENIKETIIDAVELELNYL 259 Query: 277 HETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 + G++ E+YM++IA+RR ++G +P FK +NP ++ + D+KK NF Sbjct: 260 KTKFGGTTIFGVSYKELEKYMKYIADRRLEELGFDPQFKIDQNPLKFLQKE-DVKKLTNF 318 Query: 336 FETRVTEYQ 344 FE TEY Sbjct: 319 FEVSSTEYT 327 >gi|332087397|gb|EGI92525.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella boydii 5216-82] Length = 319 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ ++ LT E+ + R Sbjct: 10 NWNKITDDKDLEVWN---RLTSNFWLPEKVPLSNDIP---ARQTLTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + P +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKIPLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|319760602|ref|YP_004124540.1| ribonucleoside-diphosphate reductase 1 subunit beta [Candidatus Blochmannia vafer str. BVAF] gi|318039316|gb|ADV33866.1| ribonucleoside-diphosphate reductase 1 subunit beta [Candidatus Blochmannia vafer str. BVAF] Length = 376 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 80/377 (21%), Positives = 142/377 (37%), Gaps = 43/377 (11%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH-WMPTEVP 60 NN L P+ G+ V + +EK + + W P E+ Sbjct: 10 KNNQLLEPMFLGQPVNIVR--------------FDQQKHIIFEKLIEKQLSFFWRPEEID 55 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D ++S L D E+ + NL + +S+ + +A+ +S PE ++ Sbjct: 56 ISKDRIDYQS---LPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELETWVETW 112 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------- 169 +F E +HS ++ +II ++ +F+ I +A Y L Sbjct: 113 SFFETIHSRSYTHIIRNIVTHPSSVFDDIVTNKEILKRAKDISIYYDDLIKLTNYYHILG 172 Query: 170 -----SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 + + ++ L + V E + FY FA + M G A+ Sbjct: 173 PGIHTINKNIVAVNLHELKKKLYLCLISINVLEAIRFYVSFACSFAFAERKLMEGNAKII 232 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETM 280 ++I RDESLHL+ ++N ++ E +Q +S + A E +AH Sbjct: 233 RFIARDESLHLSATQHILNLMQSGADDPEMAEISLMYQSESYNLFLMAAEQEKMWAHYLF 292 Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FET 338 G +GLN QY+++I N R IGL+ F N PW++ + + E Sbjct: 293 KDGSMIGLNKEILCQYIEYITNIRMQAIGLKAPFHIKANVIPWINSWLVSDNVQVAPQEV 352 Query: 339 RVTEY---QQGAELKWD 352 + Y Q ++ D Sbjct: 353 ESSSYLVGQINTQINDD 369 >gi|19553723|ref|NP_601725.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium glutamicum ATCC 13032] gi|62391364|ref|YP_226766.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium glutamicum ATCC 13032] gi|15430572|dbj|BAB64405.1| ribonucleoside diphosphate reductase [Corynebacterium glutamicum] gi|21325297|dbj|BAB99918.1| Ribonucleotide reductase beta subunit [Corynebacterium glutamicum ATCC 13032] gi|41326705|emb|CAF21187.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 BETA CHAIN [Corynebacterium glutamicum ATCC 13032] Length = 334 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 60/333 (18%), Positives = 128/333 (38%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P +VP+ +D+ W + L + E+ R Sbjct: 25 NWNSIPDSKDLEVWD---RLTGNFWLPEKVPVSNDIKSWGT---LNEVEKAATMRVFTGL 78 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ + L AF E+VH+ ++ I +L + + F Sbjct: 79 TLLDTIQGTVGAISLLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLASTAEINDAFR 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L Y + D + + V+ E FY+GF Sbjct: 139 WSEENENLQRKAKIILSYY-------------EGDDPLKRKI--ASVILESFLFYSGFYL 183 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + +K+ A+ + I+RDE++H + + + +E ++ + +L++ Sbjct: 184 PMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTFDLLYD 243 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y+ + +G ++++++ AN+ + +G E LF E +P + Sbjct: 244 LYDNETQYSEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETKVSPNILSA 300 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + +FF + Y G WD Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAENTEDDDWD 333 >gi|27904669|ref|NP_777795.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38605263|sp|Q89AS5|RIR2_BUCBP RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|27904066|gb|AAO26900.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 376 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 126/311 (40%), Gaps = 24/311 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D +++ L E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDLSRDYIDFQN---LPQHEKHIFVSNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ +F+ + +I Sbjct: 90 RSPNIALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIINTPSLIFDDIIDNKNIAN 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWF 201 +A +Y L + F G + ++ L + E + F Sbjct: 150 RAKDIAKYYDDLIELTSYWHLFGEGKHTINGKKIKIDLHELKKKLYLCLISVNALEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK----IENPHLWTKEF 257 Y FA + KM G A+ + I RDE+LHL ++N + E +KE Sbjct: 210 YVSFACSFAFAEREKMEGNAKIIRLIARDEALHLTSTQHILNILHNDKNNEGMSDISKEC 269 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++ + + E +A G +GLN QY+++I N R IGL FK Sbjct: 270 YEECYHLFIRVSDQEKIWAKYLFQNGSMLGLNQEILSQYIEYITNIRMKAIGLPSPFKIL 329 Query: 317 ENPFPWMSEVI 327 NP PW++ + Sbjct: 330 SNPIPWINSWL 340 >gi|291618545|ref|YP_003521287.1| NrdF [Pantoea ananatis LMG 20103] gi|291153575|gb|ADD78159.1| NrdF [Pantoea ananatis LMG 20103] gi|327394924|dbj|BAK12346.1| ribonucleoside-diphosphate reductase 2 beta subunit NrdF [Pantoea ananatis AJ13355] Length = 319 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 61/326 (18%), Positives = 118/326 (36%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +DL W++ L + + R Sbjct: 10 NWNRIQDEKDLEVWN---RLTSNFWLPEKVPLSNDLPAWQT---LDKQHQQLTIRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTIQNVLGAPGLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHTSDVDAAYQ 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L + + + L+ V E FY+GF Sbjct: 124 WSEENQALQNKAEIILTHYRA--------------DDPLKKKI-ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + + QQ + +L Sbjct: 169 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKALEQVDEGRREALQQFAIDLLLA 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 E+ Y VG A + ++ + AN+ +G E LF NP + Sbjct: 229 LYENEVVYTEALYGD--VGW-AEEVKTFLHYNANKALMNLGYEALFPAELTQVNPAILSA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|16761590|ref|NP_457207.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143070|ref|NP_806412.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052490|ref|ZP_03345368.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424576|ref|ZP_03357365.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584527|ref|ZP_03366353.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650063|ref|ZP_03380116.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824437|ref|ZP_06544026.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25330821|pir||AH0841 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503891|emb|CAD05919.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhi] gi|29138703|gb|AAO70272.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 319 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 59/323 (18%), Positives = 118/323 (36%), Gaps = 26/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P + KA L + E L+ V E FY+GF + Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKLFALDLLMELYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 EI Y + G + ++ + AN+ +G E LF NP + Sbjct: 232 NEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311 >gi|188996383|ref|YP_001930634.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931450|gb|ACD66080.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp. YO3AOP1] Length = 326 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 87/309 (28%), Positives = 152/309 (49%), Gaps = 6/309 (1%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y E Y W P E+ +Q D+ +KS L+ E+ + +G+FASSE LV Sbjct: 20 RYPIFKELYTKQKKAVWFPEELNIQQDVLDYKS---LSPTEKDLFDSAVGYFASSELLVQ 76 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 N + + L++P + Q F E +HS F+ I+ S +D ++N+ E + Sbjct: 77 NVVGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNSFDMDRKRIYNITLEDKLLKE 136 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 K ++ ++ T + ++ L + + ++ EG++FY+ FA ++ KM Sbjct: 137 KQELIVRAVDRITYGKADPDTIEGKKQILTSILLNNIIQEGLFFYSAFAHFFAMKDTGKM 196 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYA 276 + + I+ DESLHL GI+ I + ENP + +F + R + +A LE+ Y Sbjct: 197 KNVVSGVELILIDESLHLQNGIEAILTMVEENPEIVDDYQFVENIRQSIIDAVELELNYL 256 Query: 277 HETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 + G++ E+YM++IA+RR ++G +P F +NP ++ + D+KK NF Sbjct: 257 KTKFGGTTIFGVSYGELERYMKYIADRRLIELGFDPQFGIDQNPLKFLQKE-DVKKLTNF 315 Query: 336 FETRVTEYQ 344 FE TEY Sbjct: 316 FEVSSTEYT 324 >gi|46143780|ref|ZP_00134247.2| COG0208: Ribonucleotide reductase, beta subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 336 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 70/324 (21%), Positives = 126/324 (38%), Gaps = 24/324 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++S Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS 65 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A +S PE ++ F E +HS + Sbjct: 66 ---LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L S + G D Sbjct: 123 YTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQ 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 + L + V E + FY FA + M G A+ ++I RDE LH Sbjct: 183 YQVTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLH 242 Query: 235 LNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L +++N I ++P + +E +Q++ + A E +A G +GLN Sbjct: 243 LTGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNE 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLF 313 +Y+++I N R +GL F Sbjct: 303 DILVKYVEYITNIRMQAVGLPRPF 326 >gi|157159438|ref|YP_001463986.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli E24377A] gi|218555224|ref|YP_002388137.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli IAI1] gi|300815921|ref|ZP_07096145.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 107-1] gi|157081468|gb|ABV21176.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli E24377A] gi|218361992|emb|CAQ99598.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like [Escherichia coli IAI1] gi|300531850|gb|EFK52912.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 107-1] Length = 319 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 121/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + AN+ + EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLDYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|15079087|ref|NP_149839.1| 376L [Invertebrate iridescent virus 6] gi|82012049|sp|Q91FE8|RIR2_IIV6 RecName: Full=Probable ribonucleoside-diphosphate reductase small subunit 376L; AltName: Full=Ribonucleotide reductase small subunit gi|15042456|gb|AAK82236.1|AF303741_377 376L [Invertebrate iridescent virus 6] Length = 360 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 79/349 (22%), Positives = 137/349 (39%), Gaps = 31/349 (8%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 N P Y + K+ +HW+P+EVPM DD+ WK N L D++R + FF Sbjct: 7 RNYYKPFTYPEFYNKWDKHEKSHWLPSEVPMHDDVNDWK--NRLNDNQRDFLTNIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 + VA+ PE + A E VH + Y++ +LG+ E + + Sbjct: 65 QGDVDVASAYYTQYLPFFKLPEVTMMMGGFAGREGVHIDAYSYLLETLGMPEA-TYKEFL 123 Query: 151 EVPSITAKANWALQYTQT--LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 + K ++ +++ + + T + + + +F EGM ++ FA + Sbjct: 124 MYEEMKDKQDYIKKFSDSRHILGKGEENLTTEDKEHIAAGIALFSGFTEGMQLFSTFAML 183 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTM 264 L M G+ + + + DE+ H I++ EN Q+ + Sbjct: 184 LIFPLNGFMKGMGQIVTWSIVDETQHTEGMIELFKVFVEENKTGDQPIRPSVLQETVYKI 243 Query: 265 LHEATLLEIAYAHETM------------------PKGFVGLNAPSCEQYMQFIANRRCHQ 306 E LE A+ K F GL + Y+++IA+RR + Sbjct: 244 AKEMVGLEEAFIDLVFKKYKDEPINDDNDLETKDNKDFFGLTPQRLKAYIKYIADRRLNL 303 Query: 307 IGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQ-QGAELKW 351 +G + +F Y NP P + +I+ NFFE R T+Y + W Sbjct: 304 MGYKSIFNLEPYPTNPLPELEIMINAPTHTNFFENRSTDYANVSTKGTW 352 >gi|333001013|gb|EGK20583.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri K-272] gi|333015483|gb|EGK34822.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella flexneri K-227] Length = 319 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 121/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMLDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y E + A + ++ + N+ +G EPLF NP + Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNTNKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|291295355|ref|YP_003506753.1| ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279] gi|290470314|gb|ADD27733.1| Ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279] Length = 429 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 62/307 (20%), Positives = 125/307 (40%), Gaps = 23/307 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ E+P+ DD W + L+ +E+ + ++ L +++ + + + Sbjct: 24 FWDQNVRQFWVDEEIPLADDKLTWMT---LSREEQRVYEQVLAGLTLLDTVQGSVGMPLL 80 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 +H+ + + + + E +H+ ++ I ++L E ELF+ R P + K + Sbjct: 81 SQHIESLQAKAVMGFMGAMEHMHAKSYSSIFSTLCTSERIAELFDWVRSEPVLQEKQTFV 140 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + D++ L V+ E FY+GF L L +M E Sbjct: 141 HRRY-----------LGVQDEQSLYLGLAASVLLESFLFYSGFFYPLLLAGQGRMTSSGE 189 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H + + ++ P K ++ +ML LE Y+ M Sbjct: 190 IINLIIRDESIHGVYVGLLAQEVYAGLPEAQQKTAREGVYSMLEHLAGLEERYSR--MLY 247 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETR 339 +GL + + ++ A++ +GLEP F + NP ++ + K +FF T+ Sbjct: 248 TPLGLT-EAVVTFSRYNADKALMNLGLEPYFGVSAEAVNPVV-LAGLSTHTKNHDFFSTK 305 Query: 340 VTEYQQG 346 Y + Sbjct: 306 GNGYVKA 312 >gi|90409249|ref|ZP_01217354.1| ribonucleotide-diphosphate reductase beta subunit [Psychromonas sp. CNPT3] gi|90309647|gb|EAS37827.1| ribonucleotide-diphosphate reductase beta subunit [Psychromonas sp. CNPT3] Length = 381 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 120/314 (38%), Gaps = 30/314 (9%) Query: 41 WAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +EK + + W P E+ + D + L E+ + NL + +S+ + Sbjct: 35 EVFEKLIEKQLSFFWRPEEIDVSRDRIDF---MNLPSHEQHIFISNLKYQTLLDSIQGRS 91 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +A+ +S PE ++ +F E +HS ++ +I+ +L D E+F I +A Sbjct: 92 PNMALLPIVSLPELETWIETWSFSETIHSRSYTHILRNLFTDPSEVFEDIVTNVEIQKRA 151 Query: 160 NWALQYTQTLS---------------------SPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + QY L + T ++ L E Sbjct: 152 SDIAQYYDALIHAVQFMQLHGLEQSKIEYLDLDGNPEKLTLRVIKKKLYLCMCSINALEA 211 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + FY FA + + + G A+ + I RDE+LHLN ++N E Sbjct: 212 IRFYVSFACSFAFAERDLLEGNAKIIKLIARDEALHLNSTQQILNIWADGKDDPEMAEIA 271 Query: 259 QKS----RTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 + R + A E +A G +GLN QY+++I+N R IG E F Sbjct: 272 IECHAKGRDIFLTAAAQEKEWAAYLFKDGSMIGLNEVILCQYVEYISNVRMQAIGYEAPF 331 Query: 314 KYTENPFPWMSEVI 327 + NP PW++ + Sbjct: 332 EIKNNPIPWINHWL 345 >gi|172041159|ref|YP_001800873.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium urealyticum DSM 7109] gi|171852463|emb|CAQ05439.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium urealyticum DSM 7109] Length = 331 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 60/344 (17%), Positives = 119/344 (34%), Gaps = 50/344 (14%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 + N++ + W+ N W+P +VP+ +D+ W + L D E+ R Sbjct: 19 GSVNWNEVPDDRDLEVWD---RLTANFWLPEKVPVSNDIQSWAT---LNDAEKNATMRVF 72 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144 +++ +++ + L AF E+VH+ ++ I +L + Sbjct: 73 TGLTMLDTIQGTVGAVSLIPEATTMHEEAVLTNIAFMESVHAKSYSQIFMTLASTREIND 132 Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204 F E ++ K LQY + + V+ E FY+G Sbjct: 133 AFRWSEENENLQRKGEIILQYY---------------KGDDPLKRKIASVLLESFLFYSG 177 Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264 F + K+ A+ + I+RDES+H + + +E + Sbjct: 178 FYLPMRWSSMGKLTNTADIIRLIIRDESVHGYYIGYKYQRALENESPERQEELKGFVVEQ 237 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE------- 317 L + E+ Y + +G ++++++ AN+ + +G + LF E Sbjct: 238 LLDLYDNEVEYTESIYDE--IGWT-EDVKRFLRYNANKAMNNLGYDGLFPVEETRVSAAI 294 Query: 318 ----NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 NP + +FF + Y G + WD Sbjct: 295 LAALNP--------GGDENHDFFSGSGSSYVIGKAETTTDDDWD 330 >gi|304406354|ref|ZP_07388010.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus YK9] gi|304344412|gb|EFM10250.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus YK9] Length = 318 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 64/304 (21%), Positives = 117/304 (38%), Gaps = 21/304 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+P+ DD W L+D +R + + LG +++ + I Sbjct: 19 FWNQNIMQFWTDEEIPLSDDKMSW---IELSDAQRELYMKVLGGLTLLDTIQGGVGIPKI 75 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + L E +H+ ++ I T+L E +F + P + KA W Sbjct: 76 VEHVDGLQRKAVLSFMGMMEQIHAKSYSSIFTTLASTEEIDGVFAWVKTQPQLQNKAEWI 135 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y +++P + L V+ E FY+GF L L KM E Sbjct: 136 SVYYNNITTP-----------KSLYLALAASVLLESYLFYSGFFYPLFLAGQGKMTSSGE 184 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H + + ++ + E + R ++ E Y E Sbjct: 185 IIDLILRDESIHGLYVGVLAQEVYRDLTPEERGEADTELRELIDRLHANEEVYTKELYSG 244 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + A Y+++ N+ +GL+P+F E NP + + + K+ +FF + Sbjct: 245 VGL---ADEVLTYVRYNCNKGLMNLGLDPIFPEEEINPIVF-NGISTRTKQHDFFSKKGN 300 Query: 342 EYQQ 345 Y + Sbjct: 301 GYVR 304 >gi|326784150|ref|YP_004324543.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1] gi|310004882|gb|ADO99273.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1] Length = 395 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 80/363 (22%), Positives = 139/363 (38%), Gaps = 29/363 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + V + KY + W P EV +Q D A ++ Sbjct: 22 VFNKNIVDTTKQHMFFGPPLGVQRYDNFKYPVFDKLTQQQLGYFWRPEEVSLQKDRADYQ 81 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L +++ + NL + +S+ +A + S PE + E VHS Sbjct: 82 Q---LRPEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNIWQTMEMVHSR 138 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL------------------SS 171 ++ +II ++ D +F+ I +A S Sbjct: 139 SYTHIIKNIYPDPSVVFDAIITDEKILERATSVTAAYDEFLQAAHMYDTGNMWKEDWKDS 198 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 P+ KD ++ + + Y + EG+ FY FA + G M G A+ I RDE Sbjct: 199 PTAKWELKDLKRKLYRAVANVY-ILEGIRFYVSFACSFAFGENKLMEGNAKIISLIARDE 257 Query: 232 SLHLNFGIDVINQIKI-ENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGL 287 S H+ +++N+ K ++P + +E ++ M ++ E+ +A G +GL Sbjct: 258 SQHMTITQNILNKWKQGDDPDMVEIAQEEEKNVYEMFNKCVEEEVIWADYLFRDGSMIGL 317 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQ 344 NA ++Y+++ ANRR IGL+P F + NP PW + + + ET V Y Sbjct: 318 NAKLLQKYVEWTANRRMKSIGLKPTFDAPLSNNPLPWTEHWLSSRGLQVAPQETEVESYV 377 Query: 345 QGA 347 G Sbjct: 378 IGG 380 >gi|200386806|ref|ZP_03213418.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603904|gb|EDZ02449.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 319 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 118/323 (36%), Gaps = 26/323 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P ++P+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKMPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P + KA L + E L+ V E FY+GF + Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327 EI Y + G + ++ + AN+ +G E LF NP + Sbjct: 232 NEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311 >gi|307104534|gb|EFN52787.1| hypothetical protein CHLNCDRAFT_10712 [Chlorella variabilis] Length = 214 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 20/230 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +L A ++ LLP+KY +E Y A ++W EV + D+ W+ LTDDER Sbjct: 1 KEPILQANNERFCLLPVKYDRCFEYYKQAQASYWTAEEVDLSQDMRDWR---KLTDDERH 57 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + L FFA+S+ +V N+ + + PE R + Q+ EAVHS + ++ Sbjct: 58 FVSYVLAFFAASDGIVLENLSTRFMQEVQIPEARAFYAFQSAIEAVHSEMYGLLLEQYIR 117 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D E F+ +P + KA WA+++ ++ + V Y E Sbjct: 118 DPDERDLLFHAVDTIPCVQKKAQWAMKWIES--------------SSCFAERLVAYACVE 163 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 G+ F F I L + M G+ + I RDE LH +F + ++ Sbjct: 164 GIHFSGSFCSIFWLKKRQLMPGLTFSNEMISRDEGLHTDFACHLYELLQN 213 >gi|317049232|ref|YP_004116880.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b] gi|316950849|gb|ADU70324.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b] Length = 322 Score = 212 bits (539), Expect = 9e-53, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 121/326 (37%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +DL W++ L ++ + R Sbjct: 13 NWNRIQDEKDLEVWN---RLTSNFWLPEKVPLSNDLPAWQT---LDKQQQQLTIRVFTGL 66 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + P L +F EAVH+ ++ I ++L D + Sbjct: 67 TLLDTIQNVIGAPGLMEDALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCNTADVDAAYR 126 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L++ + + L+ V E FY+GF Sbjct: 127 WSEENEALQNKAKIVLEHYRA--------------DDPLKKKI-ASVFLESFLFYSGFWL 171 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + +E QQ + +L Sbjct: 172 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKALENVDDARREELQQFAIELLLA 231 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324 E+ Y VG A + ++ + AN+ +G E LF T NP + Sbjct: 232 LYENEVVYTEALYAD--VGW-AEEVKTFLHYNANKALMNLGYEALFPAELTTVNPAILAA 288 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 289 LSPNADENHDFFSGSGSSYVMGKAVE 314 >gi|226312721|ref|YP_002772615.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacillus brevis NBRC 100599] gi|226095669|dbj|BAH44111.1| ribonucleoside-diphosphate reductase beta chain [Brevibacillus brevis NBRC 100599] Length = 316 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 117/304 (38%), Gaps = 21/304 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+P+ DD W L+ ER K+ LG +++ + I Sbjct: 17 FWNQNIMQFWTDDEIPLSDDKMAW---MELSATERDTYKKVLGGLTLLDTVQGGVGMPKI 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + L E +H+ ++ I T+L E +F+ P + KA Sbjct: 74 MEHVDGLQRKAVLAFMGMMEQIHAKSYSSIFTTLASTEEIDGIFSWVENNPHLQKKAALI 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + Q + P + L V V E FY+GF L L KM E Sbjct: 134 SKRYQEIEKP-----------KDLYMAMVASVFLESYLFYSGFFYPLYLAGQGKMTSSGE 182 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H + + ++ + ++ +LHE E AY + Sbjct: 183 IIDLIVRDESIHGLYVGVLAQEVYQGLSVVEQTAAIEELYALLHELQENEEAYTTSLYTE 242 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + A Y+++ AN+ +GL+PLF E NP ++ + K+ +FF + Sbjct: 243 IGL---ADEVHAYVRYNANKALMNLGLDPLFPEEEVNPIV-LNGIRTQTKQHDFFSKKGN 298 Query: 342 EYQQ 345 Y + Sbjct: 299 GYVR 302 >gi|307132178|ref|YP_003884194.1| ribonucleoside-diphosphate reductase 2, subunit beta, ferritin-like protein [Dickeya dadantii 3937] gi|306529707|gb|ADM99637.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Dickeya dadantii 3937] Length = 330 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 62/319 (19%), Positives = 115/319 (36%), Gaps = 31/319 (9%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++ + +D+ W L+D ER + R ++L A Sbjct: 32 EVWNRLTTNFWLPEKIALSNDMPSWAQ---LSDIERQLTLRVFTGLTLLDTLQNTQGAPA 88 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANW 161 + P L F EAVH+ ++ I ++L L + + ++ + KA Sbjct: 89 LMADALTPHEEAVLSNIGFMEAVHARSYSAIFSTLCLTSEVDDAYSWSERNQPLQNKAAL 148 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 L + Q + + V E FY+GF + ++ A Sbjct: 149 ILSHYQ---------------HDDPLKKKIASVFLESFLFYSGFYLPMYWASRGQLTNTA 193 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + + I+RDE++H + Q ++ Q + +L E+ Y HE Sbjct: 194 DLIRLIIRDEAVHGYYIGYKYQQGLKRVGTQQQRDLQAFAYDLLQTLYDNEVDYTHELYD 253 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFET 338 VG + + ++ + AN+ +G E LF NP + ++ +FF Sbjct: 254 D--VGWSDDVVK-FLHYNANKALMNLGYEALFPAGMTDVNPAILAALSPGAEENHDFFSG 310 Query: 339 RVTEYQQGAEL-----KWD 352 + Y G + WD Sbjct: 311 AGSSYVIGKAVETEDEDWD 329 >gi|119944866|ref|YP_942546.1| ribonucleotide-diphosphate reductase subunit beta [Psychromonas ingrahamii 37] gi|119863470|gb|ABM02947.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Psychromonas ingrahamii 37] Length = 381 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 120/306 (39%), Gaps = 29/306 (9%) Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 + W P E+ + D + L D E+ + NL + +S+ + +A+ Sbjct: 43 KQLSFFWRPEEIDVSRDRIDF---LNLPDHEQHIFISNLKYQTLLDSIQGRSPNIALLPI 99 Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 +S PE ++ +F E +HS ++ +I+ +L + E+F I +A Y Sbjct: 100 VSLPELETWIETWSFSETIHSRSYTHILRNLFTEPAEIFEDIVTNVEIQKRATDISGYYD 159 Query: 168 TLSSPSFTTGTKDADQ---------------------EFLQDLFVFYVVFEGMWFYTGFA 206 L + +Q + L E + FY FA Sbjct: 160 ALIHATQFMQLHGLEQTDIDYINLENQVEKLNLRAIKKKLYLCICSVNALEAIRFYVSFA 219 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEFQQKSR 262 + + + G A+ + I RDE+LHLN ++N ++P + E + R Sbjct: 220 CSFAFAERDLLEGNAKIIKLIARDEALHLNSTQQILNLWADGKDDPEMAEIAIECFAEGR 279 Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 + +A E +A G +GLN QY+++IAN R IG P F+ NP P Sbjct: 280 EIFLQAAQQEKDWAKYLFKDGSMIGLNEQILSQYVEYIANLRMQAIGYAPEFEVKSNPIP 339 Query: 322 WMSEVI 327 W++ + Sbjct: 340 WINNWL 345 >gi|167957419|ref|ZP_02544493.1| ribonucleotide-diphosphate reductase subunit beta [candidate division TM7 single-cell isolate TM7c] Length = 277 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 89/265 (33%), Positives = 142/265 (53%), Gaps = 3/265 (1%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D QL P++Y WA+ Y A N W P EV + DLA +K LT+DE+ +K + + Sbjct: 16 DGLQLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFK---KLTEDEKNALKTVISYL 72 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +E L+ ++ IY ++ EC YL +Q +EEA H TF+YII + + E++ Sbjct: 73 NPNELLINKSLAFGIYPCVNAAECHLYLSKQMWEEANHFMTFEYIIETFPFNREEIYAAG 132 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 S+ KA + +Y + T + ++F+++L + +V EG+WFY+GF + Sbjct: 133 WGKKSLADKAAFQTKYVTRMMEERPDVTTTEGKKDFVRNLVAYNIVLEGIWFYSGFMVGM 192 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 S R N + + ++ RDE+LHL FGI+++ I ENP L EF + R ++ +A Sbjct: 193 SFRRRNLLRNVGTLLDWVTRDENLHLEFGINLLLTILHENPDLQDPEFADEIRNLILQAV 252 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQ 294 LE AY + +P G +GLNA Q Sbjct: 253 ELEEAYNRDMLPNGILGLNADYVNQ 277 >gi|251788642|ref|YP_003003363.1| Ribonucleoside-diphosphate reductase [Dickeya zeae Ech1591] gi|247537263|gb|ACT05884.1| Ribonucleoside-diphosphate reductase [Dickeya zeae Ech1591] Length = 320 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 62/312 (19%), Positives = 114/312 (36%), Gaps = 26/312 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P ++ + +D+ W LTD ER + R ++L A Sbjct: 22 EVWNRLTANFWLPEKIALSNDMPSWAQ---LTDAERQLTLRVFTGLTLLDTLQNTQGAPA 78 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + P L F EAVH+ ++ I ++L L ++ + +KA Sbjct: 79 LMADALTPHEEAVLSNIGFMEAVHARSYSAIFSTLCLTNEVDCAYHWSEHNKPLQSKAAL 138 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 L + DQ + + V E FY+GF + ++ A Sbjct: 139 ILSLYRH-------------DQPLKKKI--ASVFLESFLFYSGFYLPMYWASRGRLTNTA 183 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + + I+RDE++H + Q ++ Q + +L E+ Y HE Sbjct: 184 DLIRLIIRDEAVHGYYIGYKYQQGLKRLSTPEQRDLQLFAYELLQTLYDNEVDYTHELY- 242 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFET 338 VG + + ++ + AN+ +G E LF NP + ++ +FF Sbjct: 243 -DSVGWSGDVIK-FLHYNANKALMNLGYEALFPADMTDVNPAILAALSPGAEENHDFFSG 300 Query: 339 RVTEYQQGAELK 350 + Y G ++ Sbjct: 301 AGSSYVIGKAVE 312 >gi|69245952|ref|ZP_00603724.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO] gi|227552561|ref|ZP_03982610.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330] gi|257880353|ref|ZP_05660006.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,230,933] gi|257882206|ref|ZP_05661859.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,502] gi|257885400|ref|ZP_05665053.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,501] gi|257888211|ref|ZP_05667864.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,141,733] gi|257891012|ref|ZP_05670665.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,410] gi|257894265|ref|ZP_05673918.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,408] gi|257896901|ref|ZP_05676554.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12] gi|257899642|ref|ZP_05679295.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15] gi|258614695|ref|ZP_05712465.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecium DO] gi|260562343|ref|ZP_05832857.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68] gi|261209282|ref|ZP_05923674.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6] gi|289567001|ref|ZP_06447402.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium D344SRF] gi|293378468|ref|ZP_06624631.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium PC4.1] gi|293553988|ref|ZP_06674590.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] gi|293563177|ref|ZP_06677635.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1162] gi|293568383|ref|ZP_06679704.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1071] gi|293570828|ref|ZP_06681875.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] gi|294615274|ref|ZP_06695151.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1636] gi|294617336|ref|ZP_06696975.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1679] gi|294623134|ref|ZP_06702020.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium U0317] gi|314939361|ref|ZP_07846602.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133a04] gi|314941564|ref|ZP_07848449.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133C] gi|314949609|ref|ZP_07852933.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0082] gi|314953716|ref|ZP_07856591.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133A] gi|314992172|ref|ZP_07857616.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133B] gi|314997663|ref|ZP_07862593.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133a01] gi|68195482|gb|EAN09926.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO] gi|227178310|gb|EEI59282.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330] gi|257814581|gb|EEV43339.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,230,933] gi|257817864|gb|EEV45192.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,502] gi|257821256|gb|EEV48386.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,501] gi|257824265|gb|EEV51197.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,141,733] gi|257827372|gb|EEV53998.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,410] gi|257830644|gb|EEV57251.1| ribonucleoside-diphosphate reductase [Enterococcus faecium 1,231,408] gi|257833466|gb|EEV59887.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12] gi|257837554|gb|EEV62628.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15] gi|260073267|gb|EEW61608.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68] gi|260076828|gb|EEW64563.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6] gi|289161202|gb|EFD09101.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium D344SRF] gi|291588904|gb|EFF20731.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1071] gi|291591871|gb|EFF23503.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1636] gi|291596409|gb|EFF27663.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1679] gi|291597503|gb|EFF28668.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium U0317] gi|291601845|gb|EFF32095.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] gi|291604868|gb|EFF34344.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1162] gi|291609096|gb|EFF38371.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] gi|292642797|gb|EFF60944.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium PC4.1] gi|313588298|gb|EFR67143.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133a01] gi|313593275|gb|EFR72120.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133B] gi|313594300|gb|EFR73145.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133A] gi|313599623|gb|EFR78466.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133C] gi|313641346|gb|EFS05926.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0133a04] gi|313644033|gb|EFS08613.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium TX0082] Length = 321 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 126/319 (39%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W++ + L E+ + G Sbjct: 10 NWNEIEDIIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRTLSQL---EKDTVGHVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + + + + + + P L F E+VH+ ++ I ++L + E+F+ Sbjct: 64 TLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFD 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + GT + + V E FY+GF Sbjct: 124 WTNTNPYLQKKAE--------RINEIYKHGTPLEKK-------IASVFLETFLFYSGFYT 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + + +L+E Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETLKDWMYNLLYE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y E +G + ++++ AN+ +G++PLF T NP M+ Sbjct: 229 LYENEERYTEELY--DPIGWT-EEVKTFLRYNANKALMNLGMDPLFPDTANDVNPIV-MN 284 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 285 GISTGTSNHDFFSQVGNGY 303 >gi|194015457|ref|ZP_03054073.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus pumilus ATCC 7061] gi|194012861|gb|EDW22427.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus pumilus ATCC 7061] Length = 329 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 65/308 (21%), Positives = 114/308 (37%), Gaps = 20/308 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK LT ER + L ++ N + AI Sbjct: 26 FYDQNVKQFWLPEEISLNGDLLAWKD---LTPAERDTYMKVLAGLTLLDTEQGNTGMPAI 82 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E +F +E + KA Sbjct: 83 MAHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPSETITAVFEWVKENRYLQRKAKL 142 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + K D L V V E FY+GF L +M+ Sbjct: 143 ITDLYRDI---------KAGDDISLYKAMVASVYLESFLFYSGFYYPLYFYGQGRMMQSG 193 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E I+RDE++H + + +I + + S +L E E+AY + Sbjct: 194 EIINLIIRDEAIHGVYVGLLAQEIYNRQTDDVRADLHEWSLGLLTELYENEVAYTDDVYG 253 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETRV 340 + A + ++++ AN+ +G + F NP ++ + K +FF + Sbjct: 254 AVGL---AHDVKAFVRYNANKALMNLGFDAHFPDELVNPIV-INGLSTKTKAHDFFSMQG 309 Query: 341 TEYQQGAE 348 Y++ Sbjct: 310 NGYKKATV 317 >gi|164688728|ref|ZP_02212756.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM 16795] gi|164602204|gb|EDQ95669.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM 16795] Length = 327 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 68/305 (22%), Positives = 122/305 (40%), Gaps = 21/305 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+P E+ + D+ +W + L+ +ER + K+ LG ++ ANN + ++ Sbjct: 25 FWDQNVKQFWLPEEISVSKDVKVW---SELSPEERNLYKKVLGGLTLLDTKQANNGIPSM 81 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162 N + + L E +H+ ++ I T+L + E+F P++ KA Sbjct: 82 MSLTDNLQRKAVLSFMGTMEEIHAKSYSSIFTTLLTVPEIDEIFEWIESEPTLQKKAEIV 141 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L + D+ L V E FY+GF L L KM+ E Sbjct: 142 LAQYEN-----------TDDRYGLYMSMATSVFLESFLFYSGFFYPLFLAGQGKMMASGE 190 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDESLH + + +I + KE++ K + EI Y + Sbjct: 191 IISLILRDESLHGKYIGLLAQEIFKDFSKEEQKEYKSKVMDVFDRLMENEINYTNTIYEG 250 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + A ++++ ANR +G + + NP ++ + K +FF T+ Sbjct: 251 TGL---ADEVINFLKYNANRAMENLGYDNRLEVDPVNPIV-LNGLSTETKTHDFFSTKGN 306 Query: 342 EYQQG 346 YQ+G Sbjct: 307 GYQKG 311 >gi|319440834|ref|ZP_07989990.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium variabile DSM 44702] Length = 316 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 117/324 (36%), Gaps = 29/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D N++ K W +N W+P ++P+ +D+ W++ L++ E+ R Sbjct: 7 DWNRIEDDKDLEVWN---RLTSNFWLPEKIPLSNDVQSWRT---LSEVEQATTMRVFAGL 60 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + R P F E+VH+ ++ I +L + F Sbjct: 61 TYLDTIQSAIGAPVLARDAVTPHEEAVFANIHFMESVHARSYSSIFQTLATTPQINDAFR 120 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P++ K + + + + + V+ E FY+GF Sbjct: 121 WVEEDPNMIYKRDRVISFYE---------------GDDPLRRKAASVILETFLFYSGFYL 165 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L +K+ A+ + I+RDE +H + + + + +L + Sbjct: 166 PLKWASHSKLTNTADIIRLIIRDEVVHGYYIGYKYQVGMAGWSSAEQQAIKDEVFDLLLD 225 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324 E AY + +G ++++++ AN+ + +G E +F E P S Sbjct: 226 LYDNECAYTETLYDE--LGWT-EDVKRFLRYNANKALNNLGYEGVFPQDECRVSPAILAS 282 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348 + +FF + Y G Sbjct: 283 LDPGANENHDFFSGSGSAYTIGTA 306 >gi|56964873|ref|YP_176604.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus clausii KSM-K16] gi|56911116|dbj|BAD65643.1| ribonucleoside-diphosphate reductase beta chain [Bacillus clausii KSM-K16] Length = 334 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 121/308 (39%), Gaps = 20/308 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P EV + DL WK LT E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEVALNGDLLTWKY---LTPAEKDTYMKVLAGLTLLDTEQGNTGMPLV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E +LF + P + KAN Sbjct: 78 AEHVQGHQRKAVLNFMAMMENAVHAKSYSNIFMTLATSEEINDLFEWVKVNPRLQKKANT 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + + K D L V V E FY+GF L K++ Sbjct: 138 IVSIYKDI---------KRGDDISLFKALVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E I+RDE++H + + +I + KE Q + +L E E+ Y + Sbjct: 189 EIINLILRDEAIHGVYIGLLAQEIYNKQSPDTQKELHQFAIELLDELYKNELLYTEDLYD 248 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 + + ++++++ AN+ +G +P F+ + NP ++ + K +FF + Sbjct: 249 QVGLS---HDVKKFIRYNANKALMNLGFDPYFEDEDINPIV-LNGLNTKTKSHDFFSMKG 304 Query: 341 TEYQQGAE 348 Y++ Sbjct: 305 NGYKKATV 312 >gi|51247866|pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis gi|51247867|pdb|1UZR|B Chain B, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis gi|51247868|pdb|1UZR|C Chain C, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis Length = 296 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 115/295 (38%), Gaps = 29/295 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D+ W + LT E+ + R Sbjct: 15 NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ +++ P L AF E+VH+ ++ I ++L + + F Sbjct: 69 TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA LQ + D+ + + + E FY+GF Sbjct: 129 WSEENRNLQRKAEIVLQSYR-------------GDEPLKRKV--ASTLLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + E + + +L E Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFE 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319 E+ Y + + + ++++++ AN+ +G E LF E NP Sbjct: 234 LYDNEVEYTQDLYDEVGL---TEDVKKFLRYNANKALMNLGYEALFPRDETDVNP 285 >gi|329296713|ref|ZP_08254049.1| ribonucleoside-diphosphate reductase [Plautia stali symbiont] Length = 319 Score = 209 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 117/326 (35%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W NN W+P +VP+ +DL W+S L ++ + R Sbjct: 10 NWNRIQDEKDLEVWN---RLTNNFWLPEKVPLSNDLPAWQS---LAPQQQQLTIRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTIQNVIGAPGLMEDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCNTADVDAAYL 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA L++ + + L+ V E FY+GF Sbjct: 124 WSEENAALQNKAKIVLEHYRA--------------SDPLKKKI-ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + E QQ + +L Sbjct: 169 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKALETVDDARRAELQQFAIELLLA 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324 E+ Y VG + ++ + AN+ +G E L NP + Sbjct: 229 LYENEVVYTEALYAD--VGWT-EEVKTFLHYNANKALMNLGYEALSPAELTAVNPAILSA 285 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311 >gi|227833759|ref|YP_002835466.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|262184833|ref|ZP_06044254.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|227454775|gb|ACP33528.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] Length = 328 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 60/324 (18%), Positives = 118/324 (36%), Gaps = 29/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ W+ +N W+P +VP+ +D+ WK + + E+ + Sbjct: 19 NWNEITDQVDKDVWD---RLTSNFWLPEKVPVSNDIPTWK---IMDEAEQWATMQVFTGL 72 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ L+I + P AF E+VH+ ++ I +L FN Sbjct: 73 TMLDTMQGTVGALSILPDAATPHEEAVYTNIAFMESVHAKSYSNIFMTLADTPTINHAFN 132 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 R+ + KA+ L + + +SP + E FY+GF Sbjct: 133 WGRQSERLQYKAHRVLDFYKRGNSPMRK---------------AASTLLESFLFYSGFYL 177 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L + +K+ A+ + I+RDE++H + Q E Q K +L + Sbjct: 178 PLRMAAHSKLTNTADIIRLIIRDEAVHGYYIGYKYQQQVKHLDQAQQAELQSKVIDLLLD 237 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + +G ++++ AN+ + +G + ++ NP S Sbjct: 238 LMDNEEHYTRDLY--DPLGWT-EDVLAFLRYNANKALNNLGYDGIYPQDMCRFNPGVMTS 294 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348 + +FF + Y G Sbjct: 295 LNPGADENHDFFSGSGSSYVIGTA 318 >gi|257870055|ref|ZP_05649708.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2] gi|257804219|gb|EEV33041.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2] Length = 322 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 70/330 (21%), Positives = 128/330 (38%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W++ L+D E+ + G Sbjct: 10 NWNAIEDIIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + + + + + + P L F E+VH+ ++ I ++L + E+F Sbjct: 64 TLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKAEIDEIFE 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + GT + + V E FY+GF Sbjct: 124 WTNTNPYLQKKAE--------RINEIYKNGTPLEKK-------IASVFLETFLFYSGFYT 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + + +L+E Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQQRLKDWMYDLLYE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y E +G + ++++ AN+ +G +PLF T NP M+ Sbjct: 229 LYENEERYTEELY--DAIGWT-EEVKTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G +K D Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGTVEAMKDD 314 >gi|257865182|ref|ZP_05644835.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC30] gi|257871507|ref|ZP_05651160.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC10] gi|257874804|ref|ZP_05654457.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC20] gi|325571550|ref|ZP_08147050.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus casseliflavus ATCC 12755] gi|257799116|gb|EEV28168.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC30] gi|257805671|gb|EEV34493.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC10] gi|257808970|gb|EEV37790.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus EC20] gi|325156026|gb|EGC68222.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus casseliflavus ATCC 12755] Length = 321 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 68/330 (20%), Positives = 131/330 (39%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W++ + L E+ + G Sbjct: 10 NWNEIEDIIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRTLSPL---EKTTVGYVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + + + + + + P L F E+VH+ ++ I ++L + ++F Sbjct: 64 TLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKAEIADIFE 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + GT + + V E FY+GF Sbjct: 124 WTNTNPYLQKKAE--------RINEIYKNGTPLEKK-------IASVFLETFLFYSGFYT 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ + +L+E Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQQKLKDWMYDLLYE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y E + +G + ++++ AN+ +G +PLF T NP M+ Sbjct: 229 LYENEERYTEELYDE--IGWT-EEVKTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G+ +K D Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGSVEAMKDD 314 >gi|82545243|ref|YP_409190.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii Sb227] gi|81246654|gb|ABB67362.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Shigella boydii Sb227] gi|320186462|gb|EFW61190.1| ribonucleotide-diphosphate reductase subunit beta [Shigella flexneri CDC 796-83] gi|332091953|gb|EGI97031.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella boydii 3594-74] Length = 304 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 119/314 (37%), Gaps = 29/314 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ + P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPYALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E + KA Q+ + D + + V E FY+GF Sbjct: 124 WSEENAPLQRKAQIIQQHYR-------------GDDPLKKKI--ASVFLESFLFYSGFWL 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E+ Y+ E + A + ++ + AN+ +G EPLF NP + Sbjct: 229 LYDNELQYSDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285 Query: 325 EVIDLKKEKNFFET 338 + + +FF Sbjct: 286 LSPNADENHDFFSG 299 >gi|21672460|ref|NP_660527.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091143|sp|Q8K9W4|RIR2_BUCAP RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|21623075|gb|AAM67738.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 376 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 69/341 (20%), Positives = 138/341 (40%), Gaps = 24/341 (7%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + +K + + ++ + KY + + W P E+ + D + Sbjct: 6 FSKKKNNQLKEPMFFGQSVNIARYDQQKYNIFEKLIEKQLSFFWRPEEIDLSKDRIDF-- 63 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 + L +E+ + NL + +S+ + +A +S PE ++ +F E +HS + Sbjct: 64 -DNLPSNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIVSIPELETWIETWSFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDADQEF 185 + +II ++ + +F+ +I +A Y L + G +++ Sbjct: 123 YTHIIRNIINNPSIVFDDIISNKNINDRAQDISIYYDELIRITAYWHLLGEGNHKINEKK 182 Query: 186 LQ-----------DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 ++ + V E + FY FA + M G A+ + I RDE+LH Sbjct: 183 VEINLKLLKRRLYLCLISVNVLEAIRFYVSFACSFAFAEREIMEGNAKIIRLIARDEALH 242 Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289 L ++N + E + K E ++++ + A+ E +A G +GLN Sbjct: 243 LTGTQHILNILNNEKNNENMKNTVLECREEAIKIFISASEQEKKWAKYLFQDGSMLGLNK 302 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 QY+++I N R H IG + F+ T NP PW++ ++ Sbjct: 303 DILCQYIEYITNIRMHAIGFKMPFEKTSNPIPWINSWLNSD 343 >gi|292489180|ref|YP_003532067.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia amylovora CFBP1430] gi|292900297|ref|YP_003539666.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia amylovora ATCC 49946] gi|291200145|emb|CBJ47271.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia amylovora ATCC 49946] gi|291554614|emb|CBA22274.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia amylovora CFBP1430] Length = 319 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 123/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W N L+ DE+ + R Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---NSLSADEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + AKA LQ+ + L+ V E FY+GF + Sbjct: 127 DNAPLQAKAQIILQHYYH--------------NDPLKKKI-ASVFLESFLFYSGFYLPVY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I++DE++H + + + +E QQ + +L E Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPQRKEELQQFAIELLLELYE 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327 E+AY VG ++++ + AN+ +G E LF NP + Sbjct: 232 NELAYTDALYSG--VGWQ-EDVKKFLHYNANKALMNLGYEALFPAEMTDVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTEDEDWD 318 >gi|308806626|ref|XP_003080624.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus tauri] gi|116059085|emb|CAL54792.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus tauri] Length = 241 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 26/226 (11%) Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 + + +I D E F +P + KA+WAL++ + + Sbjct: 23 AEMYSLLIDQYVKDPAEKSHLFRAIETIPCVKKKADWALKWIDS--------------SD 68 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + + + EG++F F I L + M G+ + I RDE LH +F + Sbjct: 69 SFAERLLAFACIEGIFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLYQM 128 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 L K ++ R ++ EA +E + +++P VG+NA Y++++A+ Sbjct: 129 -------LNNKPDEEVVRKIVTEAVEIEKEFVCDSLPCALVGMNAGMMSDYIEYVADHLF 181 Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +G+ + T NPF WM E+I L+ + NFFE RV EYQ+ + Sbjct: 182 TSLGMPKEYN-TANPFDWM-ELISLQGKTNFFEKRVGEYQKAGVMN 225 >gi|254976540|ref|ZP_05273012.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-66c26] gi|255093925|ref|ZP_05323403.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile CIP 107932] gi|255315677|ref|ZP_05357260.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-76w55] gi|255518338|ref|ZP_05386014.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-97b34] gi|255651455|ref|ZP_05398357.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-37x79] gi|260684515|ref|YP_003215800.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium difficile CD196] gi|260688173|ref|YP_003219307.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium difficile R20291] gi|260210678|emb|CBA65434.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile CD196] gi|260214190|emb|CBE06438.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile R20291] Length = 323 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 127/305 (41%), Gaps = 21/305 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+P E+ + D+ +W N L++ E+ + K+ LG ++ NN + ++ Sbjct: 25 FWEQNVKQFWLPEEISVSKDIKVW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162 N + + L E +H+ ++ I +L L+ ELF P++ KA+ Sbjct: 82 MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLV 141 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L + +QE L V V E FY+GF L L KMV E Sbjct: 142 LAQYEN-----------TTNQEGLYLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGE 190 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDESLH + + +I + K ++K ++L+ EI Y + + Sbjct: 191 IISLILRDESLHGKYIGLLAQEIYDSFDKMDKKMLEEKMYSILYSLMENEIEYTNVIYRE 250 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + ++++ ANR +G E L+ NP ++ + K +FF T+ Sbjct: 251 SGLE---KEVVNFLKYNANRALENLGFEKLYTVDAINPIV-LNGLSTETKTHDFFSTKGN 306 Query: 342 EYQQG 346 YQ+G Sbjct: 307 GYQKG 311 >gi|157692410|ref|YP_001486872.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus pumilus SAFR-032] gi|194015081|ref|ZP_03053698.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus pumilus ATCC 7061] gi|157681168|gb|ABV62312.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus pumilus SAFR-032] gi|194014107|gb|EDW23672.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus pumilus ATCC 7061] Length = 326 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 123/314 (39%), Gaps = 22/314 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L + ER + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEISLNGDLLTWKY---LGEKERDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA+ Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETISEVFEWVKKNKFLQKKADM 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + +++ D L V V E FY+GF L K++ Sbjct: 138 IVSLYRSIQKD---------DPISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E I+RDE++H + + +I + KE S +L+E E+ Y + Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTPDVQKELYDFSIDLLNELYENELHYTEDIYD 248 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 + + ++++++ AN+ +G P F+ E NP ++ + K +FF + Sbjct: 249 QVNLS---HDVKKFIRYNANKALMNLGFAPYFEEEEINPIV-LNGLNTKTKSHDFFSMKG 304 Query: 341 TEYQQGAE--LKWD 352 Y++ LK D Sbjct: 305 NGYKKATVEPLKDD 318 >gi|126700615|ref|YP_001089512.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium difficile 630] gi|255102106|ref|ZP_05331083.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-63q42] gi|255307975|ref|ZP_05352146.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile ATCC 43255] gi|115252052|emb|CAJ69888.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Clostridium difficile] Length = 323 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 71/305 (23%), Positives = 127/305 (41%), Gaps = 21/305 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+P E+ + D+ +W N L++ E+ + K+ LG ++ NN + ++ Sbjct: 25 FWEQNVKQFWLPEEISVSKDIKVW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162 N + + L E +H+ ++ I +L L+ ELF P++ KA+ Sbjct: 82 MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLV 141 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L + +QE L V V E FY+GF L L KMV E Sbjct: 142 LAQYEN-----------TTNQEGLYLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGE 190 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDESLH + + +I + + ++K ++L+ EI Y + + Sbjct: 191 IISLILRDESLHGKYIGLLAQEIYDSFDKMDKEMLEEKMYSILYSLMENEIEYTNVIYRE 250 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + ++++ ANR +G E L+ NP ++ + K +FF T+ Sbjct: 251 SGLE---KEVVNFLKYNANRALENLGFEKLYTVDAINPIV-LNGLSTETKTHDFFSTKGN 306 Query: 342 EYQQG 346 YQ+G Sbjct: 307 GYQKG 311 >gi|255656920|ref|ZP_05402329.1| ribonucleoside-diphosphate reductase beta chain [Clostridium difficile QCD-23m63] gi|296452239|ref|ZP_06893946.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP08] gi|296877591|ref|ZP_06901622.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP07] gi|296258926|gb|EFH05814.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP08] gi|296431442|gb|EFH17258.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium difficile NAP07] Length = 323 Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 126/305 (41%), Gaps = 21/305 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+P E+ + D+ +W N L++ E+ + K+ LG ++ NN + ++ Sbjct: 25 FWEQNVKQFWLPEEISVSKDIKIW---NELSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 N + + L E +H+ ++ I +L + ELF P++ KA+ Sbjct: 82 MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNSEIDELFEWIETEPTLQRKADLV 141 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L + +QE L V V E FY+GF L L KMV E Sbjct: 142 LAQYEN-----------TTNQEGLYLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGE 190 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDESLH + + +I + + ++K ++L+ EI Y + + Sbjct: 191 IISLILRDESLHGKYIGLLAQEIYDSFDKMDKEILEEKMYSILYRLMENEIEYTNIIYRE 250 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + ++++ ANR +G E L+ NP ++ + K +FF T+ Sbjct: 251 SGLE---KEVVNFLKYNANRALENLGFEKLYTVDAINPIV-LNGLSTETKTHDFFSTKGN 306 Query: 342 EYQQG 346 YQ+G Sbjct: 307 GYQKG 311 >gi|284009251|emb|CBA76360.1| ribonucleoside-diphosphate reductase beta chain [Arsenophonus nasoniae] Length = 321 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 125/326 (38%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W K N W+P ++P+ +D+ W N LT +E+ + R Sbjct: 12 NWNRIEDDKDLEVWNKL---TTNFWLPEKIPLSNDIPTW---NTLTKEEKKLTIRVFTGL 65 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ N A+ P + +F EAVH+ ++ I ++L L D + + Sbjct: 66 TLLDTIQNNVGAPALMTDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDDAYQ 125 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA+ L++ + V E FY+GF Sbjct: 126 WSEENSALQKKAHLILEHYCN---------------THPLKKKIASVFLESFLFYSGFYL 170 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + I+ E + + +L Sbjct: 171 PMYWSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLIKYSDKEKDEIKDFAYLLLLN 230 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324 EI Y+ + VG ++++ + AN+ +G E LF T +P + Sbjct: 231 LYENEIKYSESLYDE--VGWT-EDVKKFLHYNANKALMNLGYESLFPETMTDVSPAILSA 287 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G + Sbjct: 288 LSPNANENHDFFSGSGSSYIIGKTIT 313 >gi|312173339|emb|CBX81594.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia amylovora ATCC BAA-2158] Length = 319 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 123/330 (37%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W N ++ DE+ + R Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---NSISADEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + AKA LQ+ + L+ V E FY+GF + Sbjct: 127 DNAPLQAKAQIILQHYYH--------------NDPLKKKI-ASVFLESFLFYSGFYLPVY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I++DE++H + + + +E QQ + +L E Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPQRKEELQQFAIELLLELYE 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327 E+AY VG ++++ + AN+ +G E LF NP + Sbjct: 232 NELAYTDALYSG--VGWQ-EDVKKFLHYNANKALMNLGYEALFPAEMTDVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTEDEDWD 318 >gi|296117839|ref|ZP_06836422.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium ammoniagenes DSM 20306] gi|295969070|gb|EFG82312.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium ammoniagenes DSM 20306] Length = 328 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 66/347 (19%), Positives = 129/347 (37%), Gaps = 35/347 (10%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 VN + + N + W+ N W+P ++P+ +D+ W++ +T Sbjct: 6 PVNAINNDAPLEGINWNDIGDSIDNDIWD---RLTTNFWLPEKIPVSNDVQSWRN---MT 59 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 E+ + ++L +++ H P+ AF E+VH+ ++ I Sbjct: 60 AQEQDATLKVFTGLTVLDTLQGTVGAVSLIPHAVTPQEEAVYTNIAFMESVHAKSYSNIF 119 Query: 136 TSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 +L E F RE + KA L + + +FV Sbjct: 120 MTLASTPEIDEAFRWARENEHMQYKARKILSEYAS---------------GEPEKMFVAS 164 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 V+ E FY+GF L + K+ A+ + I+RDE++H + I Q ++N Sbjct: 165 VMLESFLFYSGFYLPLRMASTGKITNAADIIRLIIRDEAIHG-YYIGYKYQNYLKNDKAR 223 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 Q + +L + E + + +G + ++++ AN+ + +G E +F Sbjct: 224 HAANQDEIVDLLLDLYDNESHFTEAVYDQ--IGWT-EDVKAFLRYNANKAMNNLGYEAIF 280 Query: 314 KYTENPFP--WMSEV-IDLKKEKNFFETRVTEYQQG-----AELKWD 352 E F M+ + + +FF + Y G + WD Sbjct: 281 PQEECKFNAGVMTSLDPSANENHDFFSGSGSSYVIGKAEETTDDDWD 327 >gi|190896432|gb|ACE96729.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896434|gb|ACE96730.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896436|gb|ACE96731.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896438|gb|ACE96732.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896440|gb|ACE96733.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896444|gb|ACE96735.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896446|gb|ACE96736.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896448|gb|ACE96737.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896450|gb|ACE96738.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896452|gb|ACE96739.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896454|gb|ACE96740.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896456|gb|ACE96741.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896458|gb|ACE96742.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896460|gb|ACE96743.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896462|gb|ACE96744.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896464|gb|ACE96745.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896466|gb|ACE96746.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896468|gb|ACE96747.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896470|gb|ACE96748.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896472|gb|ACE96749.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896474|gb|ACE96750.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896476|gb|ACE96751.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896478|gb|ACE96752.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896482|gb|ACE96754.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896484|gb|ACE96755.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896486|gb|ACE96756.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896488|gb|ACE96757.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896492|gb|ACE96759.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896494|gb|ACE96760.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896496|gb|ACE96761.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896498|gb|ACE96762.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896500|gb|ACE96763.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896502|gb|ACE96764.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896504|gb|ACE96765.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896506|gb|ACE96766.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 213 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 103/237 (43%), Gaps = 27/237 (11%) Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W++ LT DE+ I L FFA+S+ +V NI + + E R + Q Sbjct: 1 DLGHWEN---LTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57 Query: 124 EAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 E +HS + ++ + D E F+ VP + KA WAL++ Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWIDG------------ 105 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E + + + EG++F F I L + M G+ + I RDE LH +F Sbjct: 106 --GESFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + + ++ K +++ + ++ EA +E + +++P VG+N QY++ Sbjct: 164 LYSLLRK-------KLSEERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213 >gi|25027435|ref|NP_737489.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium efficiens YS-314] gi|259506419|ref|ZP_05749321.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium efficiens YS-314] gi|23492716|dbj|BAC17689.1| putative ribonucleotide reductase [Corynebacterium efficiens YS-314] gi|259165992|gb|EEW50546.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium efficiens YS-314] Length = 339 Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 58/319 (18%), Positives = 120/319 (37%), Gaps = 30/319 (9%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + N W+P ++P+ +D+ W N +++ E L R +++ ++ Sbjct: 40 DIWNRLTTNFWLPEKIPVSNDIQKW---NSMSEAEHLATLRVFTGLTLLDTIQGTVGAVS 96 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 + + L +F E+VH+ ++ I +L E F R + KA Sbjct: 97 MIPDATTHHEEAVLTNISFMESVHAKSYSNIFMTLASTPEINEAFRWSRHNEHLQYKAKR 156 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 L Y Q S+P+ + V+ E + FY+GF L + K+ A Sbjct: 157 ILDYYQQDSTPARKK--------------IASVMLESLLFYSGFYLPLRMASIGKLTNTA 202 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + + I+RDE++H + + ++ +L + E+ Y Sbjct: 203 DVIRLIIRDEAIHGYYIGYKYQKHIATLSPEKQATNHDEAVELLLDLYDNELEYTRHVYD 262 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEV-IDLKKEKNFFET 338 +G + ++++ AN+ +G E +F + F M+ + + +FF Sbjct: 263 D--LGWS-EDVSAFLRYNANKAMQNLGYESIFPVDQCKFDPGVMTSLDPSSNENHDFFSG 319 Query: 339 RVTEYQQG-----AELKWD 352 + Y G ++ WD Sbjct: 320 SGSSYVIGDVEATSDEDWD 338 >gi|52080345|ref|YP_079136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus licheniformis ATCC 14580] gi|52785724|ref|YP_091553.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus licheniformis ATCC 14580] gi|319645870|ref|ZP_08000100.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp. BT1B_CT2] gi|52003556|gb|AAU23498.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus licheniformis ATCC 14580] gi|52348226|gb|AAU40860.1| NrdF [Bacillus licheniformis ATCC 14580] gi|317391620|gb|EFV72417.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp. BT1B_CT2] Length = 325 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 119/308 (38%), Gaps = 20/308 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPLV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQI 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + + + D+ L V V E FY+GF L K++ Sbjct: 138 IVGLYEKI---------RQGDKISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E I+RDE++H + + +I + +E S +L E E+ Y + Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNQQTPEKKEELYAFSIDLLKELYENELEYTEDLYD 248 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 + + ++++++ AN+ +G E F+ E NP ++ + K +FF + Sbjct: 249 QVGLS---HDVKKFIRYNANKALMNLGFEAYFEEEEINPIV-LNGLNTKTKSHDFFSMKG 304 Query: 341 TEYQQGAE 348 Y++ Sbjct: 305 NGYKKATV 312 >gi|190896480|gb|ACE96753.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 213 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 102/237 (43%), Gaps = 27/237 (11%) Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W++ LT DE+ I L FFA+S+ +V NI + + E R + Q Sbjct: 1 DLGHWEN---LTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57 Query: 124 EAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 E +HS + ++ + D E F+ VP + KA WAL++ Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWIDG------------ 105 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E + + + EG++F F I L + M G+ + I RDE LH +F Sbjct: 106 --GESFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + + ++ + ++ + ++ EA +E + +++P VG+N QY++ Sbjct: 164 LYSLLRKKLGE-------ERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213 >gi|310764903|gb|ADP09853.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia sp. Ejp617] Length = 319 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 122/330 (36%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W N L +++ + R Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---NSLNAEQQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ A+ P + +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KA LQ+ + L+ V E FY+GF + Sbjct: 127 DNAPLQGKAQIILQHYYH--------------NDPLKKKI-ASVFLESFLFYSGFYLPVY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I++DE++H + + + L +E QQ + +L E Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPLRKEELQQFAIELLLELYE 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327 E+AY VG ++++ + AN+ +G E LF NP + Sbjct: 232 NELAYTEALYAG--VGWQ-KDVKKFLHYNANKALMNLGYEALFPADMTDVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTQDEDWD 318 >gi|190896442|gb|ACE96734.1| ribonucleotide reductase beta subunit [Populus tremula] gi|190896490|gb|ACE96758.1| ribonucleotide reductase beta subunit [Populus tremula] Length = 213 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 102/237 (43%), Gaps = 27/237 (11%) Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 DL W++ LT DE+ I L FF +S+ +V NI + + E R + Q Sbjct: 1 DLGHWEN---LTPDEKHFISHVLAFFVASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57 Query: 124 EAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 E +HS + ++ + D E F+ VP + KA WAL++ Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWIDG------------ 105 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E + + + EG++F F I L + M G+ + I RDE LH +F Sbjct: 106 --GESFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + + ++ K +++ + ++ EA +E + +++P VG+N QY++ Sbjct: 164 LYSLLRK-------KLSEERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213 >gi|319938784|ref|ZP_08013148.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus 1_2_62CV] gi|319811834|gb|EFW08100.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus 1_2_62CV] Length = 319 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 68/319 (21%), Positives = 122/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ +E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSPEEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSQSGVEAIRGDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + V V E FY+GF Sbjct: 123 WTNTNPYLQKKAEIINEIY---------------LNGNALEKKVASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + F++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQETFREWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEEGYTETLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDTADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|51869996|ref|YP_073549.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate China] gi|51858204|gb|AAU10888.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate China] Length = 374 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 85/320 (26%), Positives = 134/320 (41%), Gaps = 20/320 (6%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P Y WA E N HW E+ + DD+ WK L D E+ I + L F + Sbjct: 72 KPFHYPWAVELRSLHENMHWTEKEISLADDVTDWK-IGKLLDVEKKFITQILRLFTQLDV 130 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V N E R L A E H + + +LGL E + ++ + + Sbjct: 131 SVGQLYHNTFIPIFKNNEIRNMLCSFACREGTHQQAYALLNDTLGLPESD-YSAFLKYKQ 189 Query: 155 ITAKANWALQY-TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213 +T K ++ T T+ + +F+ V V EG+ + F +L+ R Sbjct: 190 MTDKTDFMSDMRTDTIGNVAFS--------------LVKAVYNEGVSLFAAFVMLLNFQR 235 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 M G+ + ++ +RDE++H+ + I E P + TK+F + T+ E LE Sbjct: 236 FGVMKGMGKVVEWSIRDENVHVEGLCKLFKTIVSEYPFILTKDFYKAVETLQQEVLKLET 295 Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 A+ + + L Y+++I RR Q+GL +NP W+S +I + Sbjct: 296 AFVDLVFIEDKLKNLKRVDVINYVKYILQRRTVQLGLSNKTDL-QNPILWVSWLISGRDV 354 Query: 333 KNFFETRVTEYQQGA-ELKW 351 NFFE RVTEY G E W Sbjct: 355 TNFFENRVTEYDVGGLEGDW 374 >gi|34419511|ref|NP_899524.1| aerobic ribonucleoside diphosphate reductase small subunit [Vibrio phage KVP40] gi|34333192|gb|AAQ64347.1| aerobic ribonucleoside diphosphate reductase small subunit [Vibrio phage KVP40] Length = 374 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 64/342 (18%), Positives = 132/342 (38%), Gaps = 22/342 (6%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 I K ++ L ++++ +K+G + + W P EV + D Sbjct: 3 KTIFNKNKVDHLGQPLFLGEDPNISRFETVKHGVFEQLTEKQLSFFWRPEEVDLTLDSQE 62 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + + + + + + +NL + + +S+ +A S+ ++ F E +H Sbjct: 63 F---DRMPEHWKHVFTQNLKYQSLLDSVQGRAPNIAFLPICSDNSLENWITTWDFSETIH 119 Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS--------------SPS 173 S ++ +I+ +L + +F+ SI A+A ++ L + Sbjct: 120 SRSYTHIMRNLYSNPSAVFDEIVLDKSIMARAEAVTEHYDKLIAETQKLNQLKTMNLDEA 179 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 + A +E L E + FY FA + M G A+ + I RDE L Sbjct: 180 HILMQESAVKEALYLCMHAVNALEAIRFYVSFACTFNFAEQGIMEGNAKVMKLIARDEQL 239 Query: 234 HLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKGFVG-LN 288 HL +I+ + E Q ++ + + E +AH +G V LN Sbjct: 240 HLKGTQALISIWQNYKDDPEMAEISLRLQPEAEKIFMQVVDQEKEWAHSLFSQGTVPGLN 299 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 A +Y++++A+ R +GL + ++P PW+ + ++ Sbjct: 300 AQILCEYVEYLADSRMRSVGLNSPYPRRKHPLPWIRKWLNSD 341 >gi|311068263|ref|YP_003973186.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus atrophaeus 1942] gi|310868780|gb|ADP32255.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus atrophaeus 1942] Length = 328 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 62/308 (20%), Positives = 122/308 (39%), Gaps = 20/308 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA Sbjct: 78 ADHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKFLQKKAQI 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + Q++ K D+ L V V E FY+GF L K++ Sbjct: 138 IVGLYQSI---------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E I+RDE++H + + +I + P E ++ S +L + E+ Y + Sbjct: 189 EIINLILRDEAIHGVYIGLLAQEIYNKQPEEKKAELREFSIELLEQLYENELEYTEDLYD 248 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 + + ++++++ AN+ +G + F+ E NP ++ + K +FF + Sbjct: 249 QVGLS---HDVKKFIRYNANKALMNLGFDSYFEEEEINPIV-LNGLNTKTKSHDFFSMKG 304 Query: 341 TEYQQGAE 348 Y++ Sbjct: 305 NGYKKATV 312 >gi|315641368|ref|ZP_07896443.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus italicus DSM 15952] gi|315482861|gb|EFU73382.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus italicus DSM 15952] Length = 321 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 125/319 (39%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L++ E+ ++ G Sbjct: 10 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSEPEKQLVGHVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L + + + + + P L F E+VH+ ++ I ++L + E+F Sbjct: 64 TLLDTLQSESGIDQLRKDARTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + AKA + + GT + + V E FY+GF Sbjct: 124 WTNTNPYLQAKAEKI--------NEIYKHGTPLQKK-------IASVFLETFLFYSGFYT 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + P E + +L E Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFQALPEAEQAELKDWMYGLLFE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y E G +G A + ++++ AN+ +G +PLF + NP M+ Sbjct: 229 LYENEENYTDELY--GEIGW-AEEVKTFLRYNANKALMNMGQDPLFPDSANDVNPIV-MN 284 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 285 GISTGTSNHDFFSQVGNGY 303 >gi|221105497|ref|XP_002169241.1| PREDICTED: similar to ribonucleoside-diphosphate reductase small chain [Hydra magnipapillata] Length = 363 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 79/353 (22%), Positives = 150/353 (42%), Gaps = 37/353 (10%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPL--KYGWAWEKYLSACNNHWMPTEVPM 61 + L A +++ ++ +LN + P+ K+ W+ Y + +W E+ Sbjct: 21 SRLLLEYDANDEKKKDSEEEILNKDLSRLVVKPINSKHKVIWDLYKKQKDAYWTAEEIDF 80 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 +D + + + + IKR L FFA ++S+V NI + + ++ E Q Sbjct: 81 SNDRHDFLKVDK---NIQHFIKRILAFFAGADSIVNINIKKKLSK-ITVKEAEIAYGFQQ 136 Query: 122 FEEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E HS + ++ + D EL N ++ V SI WA ++ + ++ Sbjct: 137 MMEDTHSEVYADMLIKIITDPVERDELINAFKTVASIKRMIQWAQRWINSKRRIGYS--- 193 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR---ANKMVGIAEQYQYIMRDESLHL 235 V + +FEG+ F FA I L + + M G+ + I +DE +H Sbjct: 194 -----------IVVFCIFEGLMFSGAFAGIYWLKKILGEDIMKGLIQSNNLIAKDEGMHT 242 Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295 FG + I + ++ ++ EA + ++ + + +G+N Y Sbjct: 243 IFGCVIYTFIIY-------RLSFEEICELMKEAVEICKSFTKDAICVDMIGMNVELMYNY 295 Query: 296 MQFIANRRCHQIGLEPLFKYTENP--FPWMSEVIDLKKEKNFFETRVTEYQQG 346 ++++A+R +G E +F T+ P F +M + L K+ NFFE R TEYQ+ Sbjct: 296 IEYVADRLMVYLGYEKIF-MTKIPDQFQFMDTIGFLNKD-NFFERRATEYQKA 346 >gi|488081|gb|AAA56996.1| ribonucleoside-diphosphate reductase small subunit [Drosophila melanogaster] Length = 214 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 106/236 (44%), Gaps = 25/236 (10%) Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSIT 156 +V + + E R + Q E VHS + +I + D + FN +P++ Sbjct: 1 LVERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVK 60 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 KA+WAL + + + + + EG++F FA I L + Sbjct: 61 RKADWALSWI-------------SSKSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGL 107 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 M G+ + I RDE LH +F + + HL + +++ ++ +A +E + Sbjct: 108 MPGLTFSNELISRDEGLHCDFAVLMFQ-------HLVQRPKRERIIEIIRDAVAIEQEFL 160 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + +P +G+N QY++F+A+R ++G+ ++ T+NPF +M E+I L + Sbjct: 161 TDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISLDGK 214 >gi|296330954|ref|ZP_06873429.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674472|ref|YP_003866144.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus subtilis subsp. spizizenii str. W23] gi|296151959|gb|EFG92833.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412716|gb|ADM37835.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus subtilis subsp. spizizenii str. W23] Length = 329 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 62/314 (19%), Positives = 123/314 (39%), Gaps = 22/314 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA Sbjct: 78 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQI 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + + D+ L V V E FY+GF L K++ Sbjct: 138 IVGLYKAIQKD---------DEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E I+RDE++H + + +I + E + + +L+E E+ Y + Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELRGFAIDLLNELYENELEYTEDLYD 248 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 + + ++++++ AN+ +G +P F+ + NP ++ + K +FF + Sbjct: 249 QVGLS---HDVKKFIRYNANKALMNLGFDPYFEEEDINPIV-LNGLNTKTKSHDFFSMKG 304 Query: 341 TEYQQGAE--LKWD 352 Y++ LK D Sbjct: 305 NGYKKATVEPLKDD 318 >gi|320539491|ref|ZP_08039160.1| putative truncated ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Serratia symbiotica str. Tucson] gi|320030616|gb|EFW12626.1| putative truncated ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein [Serratia symbiotica str. Tucson] Length = 309 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 56/289 (19%), Positives = 107/289 (37%), Gaps = 26/289 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W N W+P +VP+ +D+ W + LT E+ + R Sbjct: 14 NWNLIEDDKDLEVWN---RLTANFWLPEKVPLSNDIPSWAT---LTAKEQQLTLRVFTGL 67 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ A+ P +F EAVH+ ++ I ++L D + + Sbjct: 68 TLLDTIQNTVGAPALMADALTPHEEAVYSNISFMEAVHARSYSSIFSTLCQTSDVDDAYR 127 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 +E ++ KAN L + AD L + V E FY+GF Sbjct: 128 WSQENHALQKKANLILTHYH-------------ADDPLLMKV--ASVFLESFLFYSGFYL 172 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A + I+R E++H + + + ++ + + +LH+ Sbjct: 173 PMYWSSRAKLTNTAHLIRLIIRYEAVHGYYIGYKFQKGLERVDVIRRQQVKNVAFDLLHD 232 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 E+ Y + VG + ++ + AN+ +G E LF Sbjct: 233 LYDNEVCYTQDLYDG--VGWT-EDVKTFLHYNANKALMNLGYEALFPPR 278 >gi|117530173|ref|YP_851016.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis phage Ma-LMM01] gi|86990305|dbj|BAE79256.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis phage Ma-LMM01] gi|117165785|dbj|BAF36093.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis phage Ma-LMM01] gi|124270949|dbj|BAF45776.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage Ma-LMM02] gi|124270951|dbj|BAF45777.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage Ma-LMM03] gi|124270953|dbj|BAF45778.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage Ma-HPM05] Length = 348 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 78/359 (21%), Positives = 142/359 (39%), Gaps = 30/359 (8%) Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 L PI + +R+ +++ L +KY WA + N W+P + D+ Sbjct: 5 LPPIFNPSGDDSPQKRRLFGGNPTNIINLKDVKYKWASHLFTEMRANIWIPQATDLTPDI 64 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 + + + + R L + +SL + L + ++ PE + Q +E Sbjct: 65 NNYVT---MPPNMRRAFDGMLSYLTFLDSLQTRVLPL-LMPVITAPEVSICMGEQLSQEQ 120 Query: 126 VHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 VHS ++ YII ++ ++ ++RE P + + + + Sbjct: 121 VHSQSYAYIIETVIPTDKRDYIYELWREDPVLLKRCEYIQNLYDRYI--------HEMTM 172 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 E V + EG++F+ GF ++ M A+ + I RDE HL ++I Sbjct: 173 ENYTISMVSDFLLEGIYFFPGFRLFYAIANERYMSATADIIKLIERDEQTHLKLISNIIR 232 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 E +W + + +A EI + G G+NA + EQY +++ N R Sbjct: 233 TGLAEGTLMWD---TDEIIDLFRKAAEYEIEWGLHI-GLGVNGINATTIEQYAKYLCNIR 288 Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKKE-----KNFFETRVTEYQQGAEL--KWD 352 IGL +F+ Y+ NP+ + E NFFE+ V Y+ A++ WD Sbjct: 289 ARAIGLPTVFEGRQYSRNPYAHLERFAATTGEDSITRDNFFESGVI-YRNPAKVVDGWD 346 >gi|319645694|ref|ZP_07999925.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp. BT1B_CT2] gi|317392241|gb|EFV73037.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp. BT1B_CT2] Length = 330 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 66/314 (21%), Positives = 118/314 (37%), Gaps = 22/314 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L D E+ + L ++ N + I Sbjct: 24 FYEQNVKQFWLPEEISLNGDLLTWK---HLGDKEKDTYMKVLAGLTLLDTEQGNTGMPTI 80 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E ELF + + KA Sbjct: 81 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTEKITELFEWVKTNRYLQRKAAI 140 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + D L V V E FY+GF L K++ Sbjct: 141 IGGLYNAI---------EAGDDISLYKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQCG 191 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E I+RDE++H + + +I + + + +++ E EIAY E Sbjct: 192 EIINLIIRDEAIHGVYVGLLAQEIYNKKDEGTQHRLEMFALSLIEELYRNEIAYTEELYD 251 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 + + ++++++ N+ +G P F+ E NP ++ + K +FF + Sbjct: 252 QVGL---THDVKKFIRYNGNKALSNLGFNPYFEEEEINPIV-LNGLNTKTKSHDFFSMKG 307 Query: 341 TEYQQGAE--LKWD 352 Y++ LK D Sbjct: 308 NGYKKATVEPLKDD 321 >gi|304445906|pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase From Corynebacterium Ammoniagenes gi|304445907|pdb|3MJO|B Chain B, Small Subunit (R2f) Of Native Ribonucleotide Reductase From Corynebacterium Ammoniagenes Length = 296 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 55/290 (18%), Positives = 111/290 (38%), Gaps = 26/290 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P ++P+ +D+ W N +T E+L R Sbjct: 19 NWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGL 72 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ +++ AF E+VH+ ++ I +L E F Sbjct: 73 TLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFR 132 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ KA + Y D + + + E FY+GF Sbjct: 133 WSEENENLQRKAKIIMSYYN-------------GDDPLKKKV--ASTLLESFLFYSGFYL 177 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + L K+ A+ + I+RDES+H + Q + +E++ + ++++ Sbjct: 178 PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYD 237 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 EI Y + +G ++++++ AN+ + +G E LF E Sbjct: 238 LYENEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDE 284 >gi|9630287|ref|NP_046714.1| hypothetical protein SPBc2p162 [Bacillus phage SPBc2] gi|50812253|ref|NP_389886.2| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|75090792|sp|O64174|BNRDF_BPSPC RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|81637506|sp|O30601|YOSP_BACSU RecName: Full=SPBc2 prophage-derived ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|2522310|gb|AAB92486.1| YojQ/S [Bacillus subtilis subsp. subtilis str. 168] gi|3025640|gb|AAC13135.1| unknown [Bacillus phage SPbeta] gi|32468776|emb|CAB13896.2| SPbeta phage ribonucleoside-diphosphate reductase, beta subunit [Bacillus subtilis subsp. subtilis str. 168] Length = 329 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 64/308 (20%), Positives = 123/308 (39%), Gaps = 20/308 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F + + KA Sbjct: 78 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKKART 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + +T+ K D+ L V V E FY+GF L K++ Sbjct: 138 IVSVYKTI---------KKNDEISLFKGMVASVFLESFLFYSGFYYPLYFYGQGKLMQSG 188 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E I+RDE++H + + +I + KE + +L E E+ Y + Sbjct: 189 EIINLIIRDEAIHGVYVGLLAQEIYKKQTPQKQKELYAWALNLLQELYENELEYTEDVYD 248 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 + + AP ++++++ AN+ + +G + F+ + NP ++ + K +FF T+ Sbjct: 249 QVGL---APDVKKFIRYNANKALNNLGFDHWFEEEDVNPIV-INGLNTKTKSHDFFSTKG 304 Query: 341 TEYQQGAE 348 Y++ Sbjct: 305 NGYKKATV 312 >gi|332362636|gb|EGJ40434.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK49] Length = 332 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 22 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 75 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + V A+ + + F E+VH+ ++ I ++L + E+F Sbjct: 76 TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 135 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + + V E FY+GF Sbjct: 136 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 180 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 181 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYT 240 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 241 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 296 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 297 GISTGTSNHDFFSQVGNGY 315 >gi|255023762|ref|ZP_05295748.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J1-208] Length = 284 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 127/284 (44%), Gaps = 15/284 (5%) Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 K L++ E+ +G A+ +S I I ++++P A +E + Sbjct: 1 DAKQYPALSEQEKYAFDAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVI 59 Query: 127 HSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 H+ ++ Y++ S+ ++ +F + R P+I + + + + E Sbjct: 60 HNESYSYVLASITNLQEQNRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGE 111 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 L + + EG+ FY+GFA +L R NKM G + +I RDE H F +VI Sbjct: 112 TLVKALIQSSILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRA 171 Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 I ENP L T E + + A LE ++ E + +G G++ Y+++ AN+ Sbjct: 172 ILGENPELQTDELVEYTHDAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKML 230 Query: 305 HQIGLEPLFK-YTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 +G+ L+ +++N W+ D + + +FFE R + Y++ Sbjct: 231 GMLGIPELYPGHSDNTMTWIKAYADNFTETKTDFFEMRNSSYKK 274 >gi|193890961|gb|ACF28634.1| ribonucleotide reductase [Amphidinium carterae] Length = 213 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 27/237 (11%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ WE Y + W E+ + D W+S LT E+ IK L FFA+S+ +V Sbjct: 1 QHADLWEMYKKHEASFWTAEEIDLSKDNVDWES---LTSSEQHFIKHVLAFFAASDGIVL 57 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPS 154 N+ + PE R + Q E +HS T+ +I + E N +P+ Sbjct: 58 ENLAGQFACEIQVPEARAFYGFQIAMENIHSETYSLLIEQYIKEPQEKADILNAIETMPA 117 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + KA WA+Q+ Q + + V + EG+ F F I L + Sbjct: 118 VAEKAKWAVQWMQR--------------ENSFTERLVAFAAVEGILFSGSFCAIYWLKKR 163 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 M G+ + I RDE LH +F + +++ P +++ A + Sbjct: 164 GLMPGLTFSNELISRDEGLHADFACLIYRKLQNHLPE-------DVVHSIMRGAVEV 213 >gi|16078802|ref|NP_389621.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|221309618|ref|ZP_03591465.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|221313941|ref|ZP_03595746.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318864|ref|ZP_03600158.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. JH642] gi|221323136|ref|ZP_03604430.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. SMY] gi|321315508|ref|YP_004207795.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis BSn5] gi|1710395|sp|P50621|RIR2_BACSU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|1154633|emb|CAA92811.1| NrdF [Bacillus subtilis subsp. subtilis str. 168] gi|2634123|emb|CAB13623.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus subtilis subsp. subtilis str. 168] gi|116733911|gb|ABK20014.1| ribonucleotide-diphosphate reductase beta [synthetic construct] gi|291484287|dbj|BAI85362.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. natto BEST195] gi|320021782|gb|ADV96768.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis BSn5] Length = 329 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 124/314 (39%), Gaps = 22/314 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA Sbjct: 78 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQM 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + + D+ L V V E FY+GF L K++ Sbjct: 138 IVGLYKAIQKD---------DEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E I+RDE++H + + +I + E ++ + +L++ E+ Y + Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYD 248 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 + + ++++++ AN+ +G +P F+ + NP ++ + K +FF + Sbjct: 249 QVGLS---HDVKKFIRYNANKALMNLGFDPYFEEEDINPIV-LNGLNTKTKSHDFFSMKG 304 Query: 341 TEYQQGAE--LKWD 352 Y++ LK D Sbjct: 305 NGYKKATVEPLKDD 318 >gi|327458665|gb|EGF05013.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1057] Length = 319 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 125/319 (39%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNVIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + V A+ + + F E+VH+ ++ I ++L + E+F+ Sbjct: 63 TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFD 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + + V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|319947340|ref|ZP_08021573.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus australis ATCC 700641] gi|319746582|gb|EFV98842.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus australis ATCC 700641] Length = 319 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + V V E FY+GF Sbjct: 123 WTNTNPFLQKKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|308173699|ref|YP_003920404.1| ribonucleoside-diphosphate reductase minor subunit [Bacillus amyloliquefaciens DSM 7] gi|307606563|emb|CBI42934.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus amyloliquefaciens DSM 7] gi|328553367|gb|AEB23859.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus amyloliquefaciens TA208] gi|328911843|gb|AEB63439.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus amyloliquefaciens LL3] Length = 329 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 60/308 (19%), Positives = 122/308 (39%), Gaps = 20/308 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA+ Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAHT 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + + K D+ L V V E FY+GF L K++ Sbjct: 138 VVGLYRAI---------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E I+RDE++H + + +I + E ++ + +L E E+ Y + Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEAKKAELREFAIELLEELYHNELEYTEDLYD 248 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 + + ++++++ AN+ +G +P F+ + NP ++ + K +FF + Sbjct: 249 QVGLS---HDVKKFIRYNANKALMNLGFDPYFEEEDINPIV-LNGLNTKTKSHDFFSMKG 304 Query: 341 TEYQQGAE 348 Y++ Sbjct: 305 NGYKKATV 312 >gi|154686152|ref|YP_001421313.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus amyloliquefaciens FZB42] gi|154352003|gb|ABS74082.1| NrdF [Bacillus amyloliquefaciens FZB42] Length = 329 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 58/308 (18%), Positives = 121/308 (39%), Gaps = 20/308 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQM 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + + D+ L V V E FY+GF L K++ Sbjct: 138 IVGLYKAIQKD---------DEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E I+RDE++H + + +I + E ++ + +L++ E+ Y + Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYD 248 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 + + ++++++ AN+ +G +P F+ + NP ++ + K +FF + Sbjct: 249 QVGLS---HDVKKFIRYNANKALMNLGFDPYFEEEDINPIV-LNGLNTKTKSHDFFSMKG 304 Query: 341 TEYQQGAE 348 Y++ Sbjct: 305 NGYKKATV 312 >gi|322387902|ref|ZP_08061509.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus infantis ATCC 700779] gi|321141175|gb|EFX36673.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus infantis ATCC 700779] Length = 320 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 123/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVNALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + V V E FY+GF Sbjct: 123 WTDTNPYLQKKAQ--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ + +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKDWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|29375101|ref|NP_814254.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis V583] gi|227519132|ref|ZP_03949181.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis TX0104] gi|227553836|ref|ZP_03983885.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis HH22] gi|229547642|ref|ZP_04436367.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis TX1322] gi|229548395|ref|ZP_04437120.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis ATCC 29200] gi|255971023|ref|ZP_05421609.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1] gi|255973536|ref|ZP_05424122.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2] gi|256617388|ref|ZP_05474234.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC 4200] gi|256761391|ref|ZP_05501971.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3] gi|256852443|ref|ZP_05557819.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis T8] gi|256957628|ref|ZP_05561799.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5] gi|256959663|ref|ZP_05563834.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96] gi|256963238|ref|ZP_05567409.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis HIP11704] gi|257080134|ref|ZP_05574495.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1] gi|257080866|ref|ZP_05575227.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol] gi|257083550|ref|ZP_05577911.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1] gi|257085823|ref|ZP_05580184.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6] gi|257088966|ref|ZP_05583327.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188] gi|257415187|ref|ZP_05592181.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis AR01/DG] gi|257418242|ref|ZP_05595236.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11] gi|257420749|ref|ZP_05597739.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis X98] gi|293384855|ref|ZP_06630698.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis R712] gi|293389145|ref|ZP_06633612.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis S613] gi|294780704|ref|ZP_06746065.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis PC1.1] gi|300861776|ref|ZP_07107856.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TUSoD Ef11] gi|307272281|ref|ZP_07553541.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0855] gi|307275556|ref|ZP_07556697.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX2134] gi|307282794|ref|ZP_07562994.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0860] gi|307288831|ref|ZP_07568809.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0109] gi|307290616|ref|ZP_07570524.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0411] gi|312900212|ref|ZP_07759524.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0470] gi|312904832|ref|ZP_07763972.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0635] gi|312908153|ref|ZP_07767131.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis DAPTO 512] gi|312952106|ref|ZP_07770987.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0102] gi|312979089|ref|ZP_07790804.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis DAPTO 516] gi|29342560|gb|AAO80325.1| ribonucleoside-diphosphate reductase 2, beta subunit [Enterococcus faecalis V583] gi|227073409|gb|EEI11372.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis TX0104] gi|227177089|gb|EEI58061.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis HH22] gi|229306611|gb|EEN72607.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis ATCC 29200] gi|229307134|gb|EEN73121.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis TX1322] gi|255962041|gb|EET94517.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1] gi|255966408|gb|EET97030.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2] gi|256596915|gb|EEU16091.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC 4200] gi|256682642|gb|EEU22337.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3] gi|256712297|gb|EEU27329.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis T8] gi|256948124|gb|EEU64756.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5] gi|256950159|gb|EEU66791.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96] gi|256953734|gb|EEU70366.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis HIP11704] gi|256988164|gb|EEU75466.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1] gi|256988896|gb|EEU76198.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol] gi|256991580|gb|EEU78882.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1] gi|256993853|gb|EEU81155.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6] gi|256997778|gb|EEU84298.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188] gi|257157015|gb|EEU86975.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ARO1/DG] gi|257160070|gb|EEU90030.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11] gi|257162573|gb|EEU92533.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis X98] gi|291077859|gb|EFE15223.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis R712] gi|291081516|gb|EFE18479.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis S613] gi|294452314|gb|EFG20755.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis PC1.1] gi|295114163|emb|CBL32800.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Enterococcus sp. 7L76] gi|300848301|gb|EFK76058.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TUSoD Ef11] gi|306498330|gb|EFM67839.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0411] gi|306500300|gb|EFM69639.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0109] gi|306503650|gb|EFM72881.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0860] gi|306507661|gb|EFM76790.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX2134] gi|306511170|gb|EFM80180.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0855] gi|310625861|gb|EFQ09144.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis DAPTO 512] gi|310629888|gb|EFQ13171.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0102] gi|310631838|gb|EFQ15121.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0635] gi|311288123|gb|EFQ66679.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis DAPTO 516] gi|311292573|gb|EFQ71129.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0470] gi|315026267|gb|EFT38199.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX2137] gi|315028520|gb|EFT40452.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX4000] gi|315032246|gb|EFT44178.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0017] gi|315035532|gb|EFT47464.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0027] gi|315143982|gb|EFT87998.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX2141] gi|315146930|gb|EFT90946.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX4244] gi|315155004|gb|EFT99020.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0043] gi|315158779|gb|EFU02796.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0312] gi|315161036|gb|EFU05053.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0645] gi|315166222|gb|EFU10239.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1302] gi|315167729|gb|EFU11746.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1341] gi|315170811|gb|EFU14828.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1342] gi|315173869|gb|EFU17886.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1346] gi|315574921|gb|EFU87112.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0309B] gi|315576500|gb|EFU88691.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0630] gi|315582368|gb|EFU94559.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0309A] gi|327534208|gb|AEA93042.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus faecalis OG1RF] Length = 321 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 28/328 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W++ L+D E+ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ + + + + + P L F E+VH+ ++ I ++L + E+ +++ Sbjct: 63 TLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL-NTKKEIDDIF 121 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 N LQY + + GT + + V E FY+GF L Sbjct: 122 E-----WTNTNKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPL 169 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NK+ +AE + I+RDES+H + E P + + +L+E Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELY 229 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 E Y E +G + ++++ AN+ +G++PLF T NP M+ + Sbjct: 230 ENEERYTEELYDD--LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGI 285 Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352 +FF Y G +K D Sbjct: 286 STGTSNHDFFSQVGNGYLLGTVEAMKDD 313 >gi|315149360|gb|EFT93376.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0012] Length = 321 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 129/328 (39%), Gaps = 28/328 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W++ + L E+ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRTLSNL---EKTTVGYVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ + + + + + P L F E+VH+ ++ I ++L + E+ +++ Sbjct: 63 TLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL-NTKKEIDDIF 121 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 N LQY + + GT + + V E FY+GF L Sbjct: 122 E-----WTNTNKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPL 169 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NK+ +AE + I+RDES+H + E P + + +L+E Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELY 229 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 E Y E +G + ++++ AN+ +G++PLF T NP M+ + Sbjct: 230 ENEERYTEELYDD--LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGI 285 Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352 +FF Y G +K D Sbjct: 286 STGTSNHDFFSQVGNGYLLGTVEAMKDD 313 >gi|307268568|ref|ZP_07549940.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX4248] gi|306515057|gb|EFM83600.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX4248] Length = 321 Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats. Identities = 71/328 (21%), Positives = 131/328 (39%), Gaps = 28/328 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W++ L+D E+ + G F Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGF 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ + + + + + P L F E+VH+ ++ I ++L + E+ +++ Sbjct: 63 TLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL-NTKKEIDDIF 121 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 N LQY + + GT + + V E FY+GF L Sbjct: 122 E-----WTNTNKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPL 169 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NK+ +AE + I+RDES+H + E P + + +L+E Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELY 229 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 E Y E +G + ++++ AN+ +G++PLF T NP M+ + Sbjct: 230 ENEERYTEELYDD--LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGI 285 Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352 +FF Y G +K D Sbjct: 286 STGTSNHDFFSQVGNGYLLGTVEAMKDD 313 >gi|315223183|ref|ZP_07865044.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus anginosus F0211] gi|315187615|gb|EFU21369.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus anginosus F0211] Length = 319 Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 121/319 (37%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ +E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSPEEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSQSGVEAIRGDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + V V E FY+GF Sbjct: 123 WTNTNPYLQKKAEIINEIY---------------LNGNALEKKVASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + F++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQETFREWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G + LF T NP M+ Sbjct: 228 LYENEEGYTETLYDG--VGWT-EEVKTFLRYNANKALMNLGQDSLFPDTADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|322389171|ref|ZP_08062732.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 903] gi|321144076|gb|EFX39493.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 903] Length = 321 Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 11 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 65 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + V V E FY+GF Sbjct: 125 WTNTNPFLQKKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 170 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYT 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 230 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 285 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 286 GISTGTSNHDFFSQVGNGY 304 >gi|259907588|ref|YP_002647944.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia pyrifoliae Ep1/96] gi|224963210|emb|CAX54694.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia pyrifoliae Ep1/96] gi|283477430|emb|CAY73346.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia pyrifoliae DSM 12163] Length = 319 Score = 202 bits (514), Expect = 7e-50, Method: Composition-based stats. Identities = 62/330 (18%), Positives = 121/330 (36%), Gaps = 31/330 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W N L +++ + R Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSW---NSLNAEQQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A+ + +F EAVH+ ++ I ++L D + Sbjct: 67 DTIQNTLGAPALMADALTQHEEAVMSNISFMEAVHARSYSSIFSTLCNTSDVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + + KA LQ+ + L+ V E FY+GF + Sbjct: 127 DNAPLQGKAQIILQHYYH--------------NDPLKKKI-ASVFLESFLFYSGFYLPVY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I++DE++H + + + L +E QQ + +L E Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPLRKEELQQFAIELLLELYE 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327 E+AY VG ++++ + AN+ +G E LF NP + Sbjct: 232 NELAYTEALYAG--VGWQ-EDVKKFLHYNANKALMNLGYEALFPADMTDVNPAILAALSP 288 Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352 + + +FF + Y G + WD Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTQDEDWD 318 >gi|289423472|ref|ZP_06425274.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus anaerobius 653-L] gi|289156106|gb|EFD04769.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus anaerobius 653-L] Length = 337 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 67/304 (22%), Positives = 116/304 (38%), Gaps = 19/304 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+P EVP+ D+ W LT+ ER++ KR L ++ N+ + ++ Sbjct: 36 FWDQNVKQFWLPEEVPISKDIPSWA---ELTESERILYKRVLAGLTLLDTKQGNDGIPSM 92 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWA 162 N + + L E +H+ ++ I T+L + +LF E P + KA Sbjct: 93 MDLTENFQRKAVLSFMGTMEEIHAKSYSSIFTTLLSKHEIDDLFLWIEEEPLLQNKAKIV 152 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L+ + + P + L V E FY+GF L L KM+ E Sbjct: 153 LRQYKNVEDP-----------KSLYMSMATSVFLESFLFYSGFFFPLYLAGQGKMIASGE 201 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDESLH + + + E + E + +L E E Y Sbjct: 202 IISLILRDESLHGKYIGLLAQEKLREFSYDDRNELKDAVYRLLKELMENEEKYTRMLYEG 261 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 + ++++ AN +G E +K ++ + K +FF T+ Sbjct: 262 LGLE---DQVINFLRYNANSALVNLGFEEFYKVEPVNAIVLNGLSTETKTHDFFSTKGNG 318 Query: 343 YQQG 346 YQ+G Sbjct: 319 YQKG 322 >gi|309800432|ref|ZP_07694593.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus infantis SK1302] gi|308115948|gb|EFO53463.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus infantis SK1302] Length = 319 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 124/319 (38%), Gaps = 31/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P Q F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRADIRTPHEEAVYNIQ-FMESVHAKSYSSIFSTLNTKSEIEEIFE 121 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + V V E FY+GF Sbjct: 122 WTNTNPYLQKKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 166 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ + +L+ Sbjct: 167 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKDWMYDLLYT 226 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 227 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 282 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 283 GISTGTSNHDFFSQVGNGY 301 >gi|296876816|ref|ZP_06900864.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 15912] gi|296432318|gb|EFH18117.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus parasanguinis ATCC 15912] Length = 321 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 11 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 65 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + V V E FY+GF Sbjct: 125 WTNTNPFLQKKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 170 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 230 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 285 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 286 GISTGTSNHDFFSQVGNGY 304 >gi|306829459|ref|ZP_07462649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus mitis ATCC 6249] gi|304428545|gb|EFM31635.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus mitis ATCC 6249] Length = 320 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + V V E FY+GF Sbjct: 123 WTNTNPYLQRKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|327489434|gb|EGF21227.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1058] Length = 319 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + V A+ + + F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + V V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|331266449|ref|YP_004326079.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus oralis Uo5] gi|326683121|emb|CBZ00739.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus oralis Uo5] Length = 320 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + V V E FY+GF Sbjct: 123 WTNTNPYLQRKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|315153942|gb|EFT97958.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX0031] Length = 321 Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 28/328 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W++ L+D E+ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ + + + + + P L F E+VH+ ++ I ++L + E+ +++ Sbjct: 63 TFLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL-NTKKEIDDIF 121 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 N LQY + + GT + + V E FY+GF L Sbjct: 122 E-----WTNTNKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPL 169 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NK+ +AE + I+RDES+H + E P + + +L+E Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELY 229 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 E Y E +G + ++++ AN+ +G++PLF T NP M+ + Sbjct: 230 ENEERYTEELYDD--LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGI 285 Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352 +FF Y G +K D Sbjct: 286 STGTSNHDFFSQVGNGYLLGTVEAMKDD 313 >gi|322391986|ref|ZP_08065450.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus peroris ATCC 700780] gi|321145212|gb|EFX40609.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus peroris ATCC 700780] Length = 320 Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 123/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVNALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + V V E FY+GF Sbjct: 123 WTDTNPYLQKKAQ--------IINEIYQNGTPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ + +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPQDEQEKLKDWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|282598964|ref|YP_003358881.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Deftia phage phiW-14] gi|257219034|gb|ACV50049.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta [Deftia phage phiW-14] Length = 346 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 76/344 (22%), Positives = 139/344 (40%), Gaps = 31/344 (9%) Query: 22 KRMLNARSDVNQL----LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 R+ ++ S + Q+ P Y ++ + HW+ E + DD+ W++++ +DD Sbjct: 1 MRVADSESKLFQVSSTYKPFLYQEFYDLMTKHEDAHWVKQEAELGDDVNDWRNRS--SDD 58 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 ER IK L F + +VA+N N E +L+ A E +H + + Sbjct: 59 ERSFIKEILTVFTQGDVVVADNYKSIFIPAFKNNEVSNWLVGVAAREVIHQDAYAMANET 118 Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 GL +F +RE + + + + E L V E Sbjct: 119 FGL-PDSMFGRFREYQEMRERNDLMATQYD------------PSMVEGLAMGLVHTTFNE 165 Query: 198 GMWFYTGFAQILSLGR---------ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 G+ FA +L R + G+ + ++ +RDE +H+ + ++ E Sbjct: 166 GVCLMGAFANLLQFNRFDVPGFNGYRGRYKGLTKINKWSLRDEGIHVEGSSLLYRKVMGE 225 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 +P L T E +++ + E + K + + + Y++++ NRR Q+G Sbjct: 226 HPWLMTDEHKKQVYDLARAVVAAEDLFLDLAFKKYQLTMTKDESKAYVRYMMNRRLLQLG 285 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEK---NFFETRVTEYQQGAEL 349 + +F+ P PW+ E++ K NFFETRV YQ L Sbjct: 286 HKAIFEVQGIPCPWIEEILGGAGGKRDSNFFETRVDNYQASGAL 329 >gi|310830452|ref|YP_003965553.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] gi|309249919|gb|ADO59485.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus polymyxa SC2] Length = 342 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 74/341 (21%), Positives = 145/341 (42%), Gaps = 19/341 (5%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 N ++ + S + ++ ++ Y NHW+P+E+PM D + + L + Sbjct: 13 NKSNRIIEGESSGILNWDDIRLPQMYKLYRVLIGNHWIPSEIPMNVDKSDF---PMLPTN 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 + KR +G A +S+ V + +L++ +E +H+ ++ Y+++S Sbjct: 70 TQNTFKRIIGLLAVLDSMQTM-FVGDVREYLTDSSLEAVAAIIGQQEVIHNQSYSYVLSS 128 Query: 138 LG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 L ++ E+F ++ P + + ++ + E V +V Sbjct: 129 LVSYTEQLEIFEYWKNDPILLKR--------NLFIRDAYQAFRESPSPETFFKALVADMV 180 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++FY FA +L R KM+ ++ YI RDE+ H F ++ Q+ I+ P L T+ Sbjct: 181 LEGIFFYAAFAFFYNLARDQKMLATSQMISYIQRDENQHCYFFAELYKQLLIDFPQLNTE 240 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + + + EA E +A + G G++ Y++ IAN R +GL ++ Sbjct: 241 QNKTFVYNFMDEAVRHETEWAEYVL-DGIEGIDLDEFRGYIRHIANNRLRLMGLPAAYEG 299 Query: 316 TENPFPWMSEVID---LKKEKNFFETRVTEYQQGAEL-KWD 352 N PW+ D + FE + Y + ++ WD Sbjct: 300 VSNTMPWIRPFSDEALNDTLTDQFEAKPRTYTKASQDNDWD 340 >gi|328945482|gb|EGG39633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1087] Length = 319 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 125/319 (39%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + V A+ + + F E+VH+ ++ I ++L + E+F+ Sbjct: 63 TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFD 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + + V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|323479608|gb|ADX79047.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis 62] Length = 321 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 28/328 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W++ L+D E+ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ + + + + + P L F E+VH+ ++ I ++L + E+ +++ Sbjct: 63 TLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL-NTKKEIDDIF 121 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 N LQY + + GT + + V E FY+GF L Sbjct: 122 E-----WTNTNKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPL 169 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NK+ +AE + I+RDES+H + E P + + +L+E Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELY 229 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 E Y E +G + ++++ AN+ +G++PLF T NP M+ + Sbjct: 230 ENEEHYTEELYDD--LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGI 285 Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352 +FF Y G +K D Sbjct: 286 STGTSNHDFFSQVGNGYLLGTVEAMKDD 313 >gi|325694009|gb|EGD35927.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK150] Length = 319 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 125/319 (39%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + V A+ + + F E+VH+ ++ I ++L + E+F+ Sbjct: 63 TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFD 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + + V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|289167885|ref|YP_003446154.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis B6] gi|288907452|emb|CBJ22289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis B6] Length = 321 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 123/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 10 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 64 TLLDTMQSETGVQALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + G+ + V V E FY+GF Sbjct: 124 WTNTNPYLQKKAEIV--------NEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 229 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 284 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 285 GISTGTSNHDFFSQVGNGY 303 >gi|312867164|ref|ZP_07727374.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parasanguinis F0405] gi|311097293|gb|EFQ55527.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parasanguinis F0405] Length = 321 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 11 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 65 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 124 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + V V E FY+GF Sbjct: 125 WTNTNPFLQRKAE--------IINEIYLNGTPLEKK-------VASVFLETFLFYSGFFT 169 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 170 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 229 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 230 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 285 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 286 GISTGTSNHDFFSQVGNGY 304 >gi|42565480|gb|AAS21007.1| ribonucleoside-diphosphate reductase R2 [Hyacinthus orientalis] Length = 197 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 52/204 (25%), Positives = 81/204 (39%), Gaps = 20/204 (9%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 V ++ +L D + P+KY WE Y A + W EV + D W+ LT DE Sbjct: 8 VAEEPLLAPNPDRFCMFPIKYPEIWEMYKKAEASFWTAEEVDLSQDTRHWE---ALTADE 64 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R I L FFA+S+ +V N+ + + E R + Q E +HS + ++ S Sbjct: 65 RHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESY 124 Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D E F+ +P + KA WAL++ + V + Sbjct: 125 IKDPDEKNRLFHAIETIPCVAKKAEWALRWIDG--------------GKSFAQRVVAFAC 170 Query: 196 FEGMWFYTGFAQILSLGRANKMVG 219 EG++F I L + M G Sbjct: 171 VEGIFFSGVSCSIFWLKKRGLMPG 194 >gi|262283137|ref|ZP_06060904.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sp. 2_1_36FAA] gi|262261389|gb|EEY80088.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sp. 2_1_36FAA] Length = 319 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + V A+ + + F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + V V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEEGYTETLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDTADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|227505793|ref|ZP_03935842.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] gi|227197639|gb|EEI77687.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] Length = 318 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W+ N W+P ++P+ +DL W + +E+ R Sbjct: 9 NWNAVPDKKDAEIWD---RLTGNFWLPEKIPVSNDLPKW---GLMNAEEQWATMRVFAGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 + ++L +++ P L AF EAVH+ ++ I +L F Sbjct: 63 TALDTLQGAVGAISLMPDAVTPHEEAVLCNIAFMEAVHAKSYSNIFMTLSSTPEINRAFR 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E ++ K+ ++ + D ++ + E FY+GF Sbjct: 123 WAEESETLRYKSTRVREFY-------------EGDNSLMRKA--ASTLLESFLFYSGFYL 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L + A+ + I+RDE++H + Q + + + ++ + Sbjct: 168 PLRFASRGYLTNTADVIRLIIRDEAVHGYYIGYKYQQAVKQLNPAQQQGLKDSVFDLVFD 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324 EI Y + +G ++++++ AN+ + +G E LF E P S Sbjct: 228 LYDNEITYTEKIY--DALGWT-EDVKRFLRYNANKALNNLGYEGLFPSDECRVDPAILSS 284 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 D + +FF + Y G WD Sbjct: 285 LAPDANETHDFFSGSGSSYVIGKAEETQDDDWD 317 >gi|332686050|ref|YP_004455824.1| ribonucleotide reductase of class Ib (aerobic), subunit beta [Melissococcus plutonius ATCC 35311] gi|332370059|dbj|BAK21015.1| ribonucleotide reductase of class Ib (aerobic), beta subunit [Melissococcus plutonius ATCC 35311] Length = 323 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 120/319 (37%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + L WEK W+ T +P+ +DL W++ L++ E+ G Sbjct: 9 NWNSIEDLIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRT---LSELEKTTFAHVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + + + + + P L F E+VH+ ++ I ++L + E+FN Sbjct: 63 TLLDTVQSESGIDQLRKDARTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFN 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + G + V V E FY+GF Sbjct: 123 WIDTNQQLQYKAKRV--------NEIYKHGKPLQKK-------VANVFLETFLFYSGFYT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + + E + +L+E Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQRGFNGLEEQEQDELKNWMYDLLYE 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y E +G + ++++ AN+ +G+ PLF T NP M+ Sbjct: 228 LYENEEKYTEELY--DPLGWT-EDVKIFLRYNANKALMNLGMNPLFPDTANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|324993305|gb|EGC25225.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK405] gi|324995391|gb|EGC27303.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK678] gi|325697177|gb|EGD39064.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK160] gi|327461576|gb|EGF07907.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1] gi|327473300|gb|EGF18720.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK408] Length = 319 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + V A+ + + F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + + V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|157149762|ref|YP_001450838.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gordonii str. Challis substr. CH1] gi|157074556|gb|ABV09239.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 319 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + V A+ + + F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + V V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEEGYTETLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDTADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|293365329|ref|ZP_06612046.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus oralis ATCC 35037] gi|306825287|ref|ZP_07458629.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307703869|ref|ZP_07640810.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus oralis ATCC 35037] gi|315613100|ref|ZP_07888010.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis ATCC 49296] gi|291316779|gb|EFE57215.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus oralis ATCC 35037] gi|304432723|gb|EFM35697.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307622704|gb|EFO01700.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus oralis ATCC 35037] gi|315314662|gb|EFU62704.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis ATCC 49296] Length = 320 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + G+ + V V E FY+GF Sbjct: 123 WTNTNPYLQRKAE--------IINEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|270292678|ref|ZP_06198889.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus sp. M143] gi|270278657|gb|EFA24503.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus sp. M143] Length = 322 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRSDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + G+ + + V E FY+GF Sbjct: 123 WTNTNPYLQRKAE--------IINEIYLNGSPLEKK-------IASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|125717616|ref|YP_001034749.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK36] gi|323352633|ref|ZP_08087603.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis VMC66] gi|125497533|gb|ABN44199.1| Ribonucleoside-diphosphate reductase 2, beta subunit, putative [Streptococcus sanguinis SK36] gi|322121669|gb|EFX93415.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis VMC66] gi|325688330|gb|EGD30349.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK72] gi|325690076|gb|EGD32080.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK115] gi|332363056|gb|EGJ40843.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK355] Length = 319 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + V A+ + + F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + + V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|325973169|ref|YP_004250233.1| ribonucleoside-diphosphate reductase subunit beta [Mycoplasma suis str. Illinois] gi|323651771|gb|ADX97853.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma suis str. Illinois] Length = 330 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 127/311 (40%), Gaps = 22/311 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ E+P+ D +W+ LT+ E+ + + L ++ + I Sbjct: 28 FWDQNVRQFWVDEEIPLSGDKLVWQ--ARLTEKEKDVYVKVLVSLTLLDTHQGAIGMNRI 85 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 + + + L A E +H+ ++ I +L E ELF ++ PS+ K + Sbjct: 86 CLAVPDLPTKAVLQFMAMMEQMHAKSYSSIFCTLLSTEQINELFEWIKKEPSLQKKVDIV 145 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + Y + + DQE L V V E FY+GF +L L M+ E Sbjct: 146 VSYYENI-----------KDQESLYMAMVASVFLESFLFYSGFFYMLYLSSQGLMINSGE 194 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDE++H + ++ +++ ++ +++ ++L E EI Y + Sbjct: 195 IINLIIRDEAIHGLYIGNLASKLFSTFDSEKQEKLKKQVYSLLEELMENEIEYTEKVYSP 254 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETR 339 + Q++++ AN+ + LE + TE NP + + + K +FF T+ Sbjct: 255 INL---VGEVIQFLKYNANKALQNLDLEEKYDVTENDINPMIF-NGLNTSTKNHDFFSTK 310 Query: 340 VTEYQQGAELK 350 Y + ++ Sbjct: 311 GNGYIKTTHVE 321 >gi|325989612|ref|YP_004249311.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma suis KI3806] gi|323574697|emb|CBZ40353.1| Ribonucleoside-diphosphate reductase beta chain [Mycoplasma suis] Length = 330 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 127/311 (40%), Gaps = 22/311 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ E+P+ D +W+ LT+ E+ + + L ++ + I Sbjct: 28 FWDQNVRQFWVDEEIPLSGDKLVWQ--ARLTEKEKDVYVKVLVSLTLLDTHQGAIGMNRI 85 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 + + + L A E +H+ ++ I +L E ELF ++ PS+ K + Sbjct: 86 CLAVPDLPTKAVLQFMAMMEQMHAKSYSSIFCTLLSTEQINELFEWIKKEPSLQKKVDIV 145 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + Y + + DQE L V V E FY+GF +L L M+ E Sbjct: 146 VSYYENI-----------KDQESLYMAMVASVFLESFLFYSGFFYMLYLSSQGLMINSGE 194 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDE++H + ++ +++ ++ +++ ++L E EI Y + Sbjct: 195 IINLIIRDEAIHGLYIGNLASKLFSTFDSEKQEKLKKQVYSLLEELMENEIEYTEKIYSP 254 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETR 339 + Q++++ AN+ + LE + TE NP + + + K +FF T+ Sbjct: 255 INL---VGEVIQFLKYNANKALQNLDLEEKYDVTENDINPMIF-NGLNTSTKNHDFFSTK 310 Query: 340 VTEYQQGAELK 350 Y + ++ Sbjct: 311 GNGYIKTTHVE 321 >gi|307706628|ref|ZP_07643435.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus mitis SK321] gi|307618083|gb|EFN97243.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus mitis SK321] Length = 320 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + G+ + V V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|324990559|gb|EGC22495.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK353] Length = 319 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + V A+ + + F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + + V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLSFNELPEDEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|322412098|gb|EFY03006.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 319 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 69/330 (20%), Positives = 126/330 (38%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+D E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSDLEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + + V AI + + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + V E FY+GF Sbjct: 123 WTNNNKFLQKKAQIINEIYE---------------HGDALQKKVASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + F++ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETFREWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEEDYTKTLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G+ + D Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313 >gi|322376536|ref|ZP_08051029.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. M334] gi|321282343|gb|EFX59350.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. M334] Length = 320 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + G+ + V V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|323127635|gb|ADX24932.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 319 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 69/330 (20%), Positives = 126/330 (38%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+D E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSDIEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + + V AI + + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + V E FY+GF Sbjct: 123 WTNNNEFLQKKAQIINEIYE---------------HGDALQKKVASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + F++ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETFREWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEEDYTKSLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G+ + D Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313 >gi|322372696|ref|ZP_08047232.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C150] gi|321277738|gb|EFX54807.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C150] Length = 319 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 126/317 (39%), Gaps = 26/317 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ WEK W+ T +P+ +DL W+ L+ +E+ ++ + G Sbjct: 9 NWNEIEDAIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ + V AI + P L F E+VH+ ++ I ++L + E+ +++ Sbjct: 63 TLLDTMQSQTGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL-NTKSEIEDIF 121 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 S N LQ + + + GT + V E FY+GF L Sbjct: 122 EWTNS-----NEYLQTKAKIINDIYENGTPLQKK-------VASTFLETFLFYSGFFTPL 169 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NK+ +AE + I+RDES+H + E P + F++ +L+E Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQESFREWMYDLLYELY 229 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 E Y VG ++++ AN+ +G +PLF + NP M+ + Sbjct: 230 ENEELYTKSLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDSANDVNPIV-MNGI 285 Query: 327 IDLKKEKNFFETRVTEY 343 +FF Y Sbjct: 286 STGTSNHDFFSQVGNGY 302 >gi|307704819|ref|ZP_07641714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus mitis SK597] gi|307708708|ref|ZP_07645171.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus mitis NCTC 12261] gi|307709353|ref|ZP_07645811.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis SK564] gi|307615282|gb|EFN94492.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus mitis NCTC 12261] gi|307619936|gb|EFN99054.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus mitis SK564] gi|307621648|gb|EFO00690.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus mitis SK597] Length = 320 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNVEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + G+ + V V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|327468920|gb|EGF14392.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK330] Length = 319 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 123/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + V A+ + + F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + GT + + V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQNKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|156847976|ref|XP_001646871.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM 70294] gi|156117552|gb|EDO19013.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM 70294] Length = 351 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 65/332 (19%), Positives = 133/332 (40%), Gaps = 27/332 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 D+ +L L P+KY ++ Y W E+ D+ W + +T DE+ Sbjct: 25 DESILTENKRRFVLFPIKYHEIYDAYKKREALFWTAEELDFSKDIQNWND-DKITKDEKE 83 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 R L FAS++ + N+ + PE + + Q + +H + +I SL Sbjct: 84 YFIRLLALFASND-MDRENLTEHLSAECQTPEAKCFYGFQIMVDNIHQEVYGILIDSLVK 142 Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 D+ + +F +++ +I K +A + + + D F + L V Sbjct: 143 DDEKRTSMFEEIKDLTNIKEKIEYAKSWFE------------NEDNLFGEKLIAEAAVL- 189 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 G++ + + +LS + + G ++RD LH++F + HL + Sbjct: 190 GIFSLSAYVSVLSFQKGGLIPGFVTGVDNMLRDRGLHVDFCCLMY-------AHLKNQID 242 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + ++ +A +E + +P V L Q+++++A+ G E + T Sbjct: 243 SEIVQKIIVDAVEIEKKSLLKALPIIKVNLKIDEMNQFIEYVADSILVAFGNEKHYNAT- 301 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NP+ +M V+ L N + + Q+ +E Sbjct: 302 NPYEFMENVV-LPGNTNSLAKTIADAQKASEF 332 >gi|295698298|ref|YP_003602953.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus Riesia pediculicola USDA] gi|291156973|gb|ADD79418.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus Riesia pediculicola USDA] Length = 375 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 72/356 (20%), Positives = 135/356 (37%), Gaps = 25/356 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + + + + ++++ KY + W P E+ + D ++ Sbjct: 4 VFSKISNDPLKEPMFFGNHVNISRFDQQKYSIFETLTEKQLSFFWRPEEIDISKDRIDYQ 63 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 S L E+ + RNL + +S+ + + A +S PE ++ +F E +HS Sbjct: 64 S---LKLYEKKIFIRNLQYQILLDSIQSRSPNCAFLPIVSLPEVENWIETWSFSETIHSR 120 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----PSFTTGTKDAD-- 182 ++ YII ++ D +F+ I +A Y L +F G Sbjct: 121 SYTYIIRNIIDDPSLIFDKIVSNQEIIDRAKDISFYYDHLIQLIRLYQTFGEGIHKIHEK 180 Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 ++ L + E + FY FA + M G A+ + I RDE+L Sbjct: 181 KVTVSLRELKKSLYLCLISVNALESIRFYVSFACSFAFAEKELMEGNAKIIKLIARDEAL 240 Query: 234 HLNFGIDVINQIK--IENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 H+ +IN ++ E+ + KE + + + E +A G +GLN Sbjct: 241 HVTGTQHMINIMQSSKEDKEMIEISKECLMICQKIFLNVSDQEKRWADYLFSNGNLIGLN 300 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY 343 ++Y+ +I R IGL+ NP PW++ + ++ ET V+ Y Sbjct: 301 KKILKEYIDYITEVRMRAIGLKKDLIKKINPIPWINAWLSSDNIQSAPQETEVSSY 356 >gi|251782830|ref|YP_002997133.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391460|dbj|BAH81919.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 319 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 69/330 (20%), Positives = 126/330 (38%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+D E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSDIEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + + V AI + + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + V E FY+GF Sbjct: 123 WTNNNEFLQKKAQIINEIYE---------------HGDALQKKVASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + F++ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETFREWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEENYTKSLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G+ + D Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313 >gi|148994532|ref|ZP_01823712.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP9-BS68] gi|147927202|gb|EDK78238.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP9-BS68] Length = 319 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + G+ + V V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|328912184|gb|AEB63780.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus amyloliquefaciens LL3] Length = 305 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 63/309 (20%), Positives = 121/309 (39%), Gaps = 22/309 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L E+ + L ++ N + + Sbjct: 2 FYNQNVKQFWLPEEIALNGDLLTWKY---LGTKEQDTYMKVLAGLTLLDTEQGNTGMPIV 58 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F ++ + KA+ Sbjct: 59 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKQNKYLQKKAHT 118 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + + K D+ L V V E FY+GF L K++ Sbjct: 119 VVGLYRAI---------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMNSG 169 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM- 280 E I+RDE+LH + + +I + + KE + + +L + E+ Y + Sbjct: 170 EIVNLIIRDEALHGVYTGLLAQEIYSKQTEIKKKELYKWTIDLLLDLYENELDYTTDLYD 229 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETR 339 P G ++++++ AN+ + +G + F E NP ++ + K +FF + Sbjct: 230 PVGLTH----DVKKFIRYNANKALNNLGFDHYFHEEEINPVV-LNGLSTKTKSMDFFSQK 284 Query: 340 VTEYQQGAE 348 Y++ Sbjct: 285 GNSYRKATA 293 >gi|322374376|ref|ZP_08048890.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C300] gi|321279876|gb|EFX56915.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus sp. C300] Length = 320 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 123/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + G+ + V V E FY+GF Sbjct: 123 WTNTNPYLQRKAE--------IINEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQGKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|184154755|ref|YP_001843095.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus fermentum IFO 3956] gi|260663216|ref|ZP_05864108.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|183226099|dbj|BAG26615.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum IFO 3956] gi|260552408|gb|EEX25459.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|299782855|gb|ADJ40853.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum CECT 5716] Length = 333 Score = 199 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 70/324 (21%), Positives = 127/324 (39%), Gaps = 28/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + NQ+ + WEK W+ T +P+ +DL W+ L DD + + G Sbjct: 10 NWNQVSDMIDKATWEKL---TEQFWLDTRIPVSNDLDDWR---ELDDDHKWTVGHVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++L + + A+ + + P L F E+VH+ ++ I ++L + E+F+ Sbjct: 64 TLLDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFS 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +KA DA ++ L+ V E FY+GF Sbjct: 124 WSDSEEYLQSKAVKIGNLY------------LDAQEDPLKKKV-ANVFLETFLFYSGFYT 170 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + + ++ ++ L+E Sbjct: 171 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGMNQLTEKQQQDMKRWMYDFLYE 230 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y H + +G ++++ AN+ +G +PLF T NP M+ Sbjct: 231 LYDNEEKYTHVLYDQ--IGWT-DDVLVFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 286 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348 + +FF Y+ GA Sbjct: 287 GISTTTSNHDFFSQVGNGYRLGAV 310 >gi|168489010|ref|ZP_02713209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP195] gi|183572389|gb|EDT92917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP195] gi|332073523|gb|EGI84002.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA17570] Length = 320 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + G+ + V V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|56808544|ref|ZP_00366279.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus pyogenes M49 591] gi|209559615|ref|YP_002286087.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes NZ131] gi|209540816|gb|ACI61392.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Streptococcus pyogenes NZ131] Length = 319 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 68/330 (20%), Positives = 122/330 (36%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + V E FY+GF Sbjct: 123 WTNNNEFLQKKAQIINEIYE---------------HGDALQKKVASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + F+ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEEKYTKTLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G+ + D Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313 >gi|330004285|ref|ZP_08304843.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] gi|328536657|gb|EGF62979.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp. MS 92-3] Length = 380 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 78/352 (22%), Positives = 133/352 (37%), Gaps = 38/352 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 AN+ P+ G VNV +R D+ KY + + W P EV + Sbjct: 10 ANDATKEPMFLGNS-VNV-------SRYDIQ-----KYREFEKLIEKQLSFFWRPEEVDI 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + + L D ER + NL + +S+ + + + S PE ++ A Sbjct: 57 SQDRIDYMT--KLADHERHIFNSNLRYQTLLDSVQGRSPNVTLLPLASIPELETWIETWA 114 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS---------- 171 F E +HS ++ +II + D E+F+ I ++A+ L Sbjct: 115 FSETIHSRSYTHIIRGMVDDPSEIFDGIVTDEQIISRASSVSAEYDKLYQMVCAREHLGE 174 Query: 172 -------PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 S G Q L V E + FY FA + G + G A+ Sbjct: 175 DEFERLYASEFDGKPYPMQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKLLEGNAKIM 234 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK----SRTMLHEATLLEIAYAHETM 280 + I RDE+LH ++ ++ L K+ ++ + + E+ +A Sbjct: 235 RLIARDEALHCEGTERMLRNMRNGREGLLWKQIAEEEEPFVYQTMLDVAEQEMRWADYLF 294 Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK 330 G +GLNA +QY+++ N ++ L PLF +P PWM+ + Sbjct: 295 KDGSMIGLNAKILKQYVKYRTNLAMKRLHLNPLFDDVTFDPLPWMNSWLFTD 346 >gi|227514022|ref|ZP_03944071.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|227087608|gb|EEI22920.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] Length = 333 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 70/324 (21%), Positives = 126/324 (38%), Gaps = 28/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + NQ+ + WEK W+ T +P+ +DL W+ L DD + + G Sbjct: 10 NWNQVSDMIDKATWEKL---TEQFWLDTRIPVSNDLDDWR---ELDDDHKWTVGHVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++L + + A+ + + P L F E+VH+ ++ I ++L + E+F+ Sbjct: 64 TLLDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFS 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA DA ++ L+ V E FY+GF Sbjct: 124 WSDSEEYLQNKAVKIGNLY------------LDAQEDPLKKKV-ANVFLETFLFYSGFYT 170 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + + ++ ++ L+E Sbjct: 171 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGMNQLTEKQQQDMKRWMYDFLYE 230 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y H + +G ++++ AN+ +G +PLF T NP M+ Sbjct: 231 LYDNEEKYTHVLYDQ--IGWT-DDVLVFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 286 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348 + +FF Y+ GA Sbjct: 287 GISTTTSNHDFFSQVGNGYRLGAV 310 >gi|307244651|ref|ZP_07526755.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus stomatis DSM 17678] gi|306492032|gb|EFM64081.1| ribonucleoside-diphosphate reductase, beta subunit [Peptostreptococcus stomatis DSM 17678] Length = 328 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 67/304 (22%), Positives = 120/304 (39%), Gaps = 19/304 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+P EVP+ D+ W + L++ ER++ KR L ++ N+ + ++ Sbjct: 30 FWDENVKQFWLPEEVPISKDIPSW---SQLSESERVLYKRVLAGLTLLDTKQGNDGIPSM 86 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 N + + L E +H+ ++ I T+L + +LF E P + KA Sbjct: 87 MELTENFQRKAVLSFMGTMEEIHAKSYSSIFTTLLSKQEINDLFVWIEEEPLLQNKAKLV 146 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 L+ + +P + L V E FY+GF L L KM+ E Sbjct: 147 LRQYKNTHTP-----------KGLYMSMATSVFLESFLFYSGFFYPLFLAGQGKMISSGE 195 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDESLH + + + E + E ++K ++L E E Y Sbjct: 196 IISLILRDESLHGKYIGLLAQEKFNEFHYDDKNELKEKVYSLLKELMENEEKYTKLLYEG 255 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 + ++++ AN +G E +K ++ + K +FF T+ Sbjct: 256 SGLE---EQVINFLKYNANTALTNMGFEEFYKVEPVNAIVLNGLSTETKTHDFFSTKGNG 312 Query: 343 YQQG 346 YQ+G Sbjct: 313 YQKG 316 >gi|225860977|ref|YP_002742486.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae Taiwan19F-14] gi|298229749|ref|ZP_06963430.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255394|ref|ZP_06978980.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502819|ref|YP_003724759.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae TCH8431/19A] gi|225727952|gb|ACO23803.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae Taiwan19F-14] gi|298238414|gb|ADI69545.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae TCH8431/19A] gi|327389423|gb|EGE87768.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Streptococcus pneumoniae GA04375] Length = 320 Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + G+ + V V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|149013339|ref|ZP_01834070.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP19-BS75] gi|147762929|gb|EDK69876.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP19-BS75] Length = 320 Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + G+ + V V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|332361651|gb|EGJ39455.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1056] gi|332365967|gb|EGJ43723.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus sanguinis SK1059] Length = 319 Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 123/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + V A+ + + F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFA 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + GT + + V E FY+GF Sbjct: 123 WTNTNSYLQKKAE--------IINEIYLNGTALEKK-------IASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|15901045|ref|NP_345649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae TIGR4] gi|111657123|ref|ZP_01407908.1| hypothetical protein SpneT_02001649 [Streptococcus pneumoniae TIGR4] gi|14972661|gb|AAK75289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus pneumoniae TIGR4] Length = 320 Score = 199 bits (505), Expect = 8e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + G+ + V V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|228904848|ref|ZP_04068902.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] gi|228854862|gb|EEM99466.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis IBL 4222] Length = 343 Score = 199 bits (505), Expect = 8e-49, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 124/309 (40%), Gaps = 16/309 (5%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y W+ E+P+ D +W + L D++ + K+ LG ++ + + Sbjct: 30 YNQMRQQFWLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLVS 86 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163 H+ +P+ + + A E +H+ ++ +I +L +E +F+ E P + KA+ Sbjct: 87 LHMEDPQKKAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADIIT 146 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + + L P D D + L V V E FY+GF L L ++ E Sbjct: 147 GHYRKLLKP-------DVDPKELYMAIVASVFLESFLFYSGFFYPLFLAGQGQLTASGEI 199 Query: 224 YQYIMRDESLHL-NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDE++H GI + + +E +++ +L E+ Y ++ Sbjct: 200 IALILRDEAIHGVTGGIFAQEIYENQLTEAEQQEVDKEAIQLLEMLYANELDYTNDVY-A 258 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETRVT 341 +++++ AN+ +G + F NP + + K+ +FF + Sbjct: 259 PLGKDMIEEVNKFLRYNANKAMMNLGYDQYFDDEYVNPIVQ-NGLQTKTKQHDFFSVKGN 317 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 318 GYVKAINVE 326 >gi|156564205|ref|YP_001429715.1| nrd beta subunit [Bacillus phage 0305phi8-36] gi|154622902|gb|ABS83782.1| nrd beta subunit [Bacillus phage 0305phi8-36] Length = 352 Score = 199 bits (505), Expect = 8e-49, Method: Composition-based stats. Identities = 79/308 (25%), Positives = 137/308 (44%), Gaps = 18/308 (5%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 ++ + N W P E+ M++D +W + LT E+ R A +SL I+ Sbjct: 47 WYDISQTLEANFWRPVEIKMKEDEKMW---DSLTPIEQDTFLRVGTALACLDSLQVKAIL 103 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKA 159 I R +N A +EA H+ ++ YI +SL + + FN + P + + Sbjct: 104 EVI-RFTTNSALANISAFIAQQEATHTTSYSYITSSLVRLPVQNQYFNETMKHPVLAKRN 162 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 L + + ++ + L + V + EG++FY+GFA L KM+ Sbjct: 163 KLVLDVYEDFA--------ENPSLQNLFRMLVQSINLEGIYFYSGFAFFYWLASQQKMMK 214 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + YI RDE H F +I ++ ENP L T+E Q L EA E +A E Sbjct: 215 SSTMISYIQRDEMQHAYFIGLLIRRLLTENPELNTQENAQYIVDSLKEAVATEKEWAGEI 274 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK---EKNFF 336 + GL+ + Y++++AN+R Q+G++ +++ NP PW+ D + + F Sbjct: 275 L-ADIEGLDLEEFDHYIEYLANKRVRQLGMDNIYEERGNPMPWIQVFSDEMMEHTKTDQF 333 Query: 337 ETRVTEYQ 344 E + +Y Sbjct: 334 ENKSRDYS 341 >gi|322385107|ref|ZP_08058754.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus cristatus ATCC 51100] gi|321270731|gb|EFX53644.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus cristatus ATCC 51100] Length = 321 Score = 199 bits (505), Expect = 8e-49, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 125/319 (39%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + V A+ + + F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + G+ + + V E FY+GF Sbjct: 123 WTNTNPYLQRKAE--------IINEIYLNGSPLEKK-------IASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|320546423|ref|ZP_08040738.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus equinus ATCC 9812] gi|320448808|gb|EFW89536.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus equinus ATCC 9812] Length = 320 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 68/330 (20%), Positives = 127/330 (38%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+D E+ ++ + G Sbjct: 10 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + + V AI + P L F E+VH+ ++ I ++L + +F Sbjct: 64 TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEAIFE 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + + KA + + + G + + E FY+GF Sbjct: 124 WTNKNEFLQKKA--------KIINDIYENGDALQKK-------IASTFLETFLFYSGFFT 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E E + +L++ Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDKQDELRDWMYDLLYQ 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + VG ++++ AN+ +G +PLF T NP M+ Sbjct: 229 LYENEENYTKSLYDE--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G+ +K D Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGSVEAMKDD 314 >gi|146318863|ref|YP_001198575.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis 05ZYH33] gi|146321071|ref|YP_001200782.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis 98HAH33] gi|223932819|ref|ZP_03624816.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591] gi|253751944|ref|YP_003025085.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis SC84] gi|253753767|ref|YP_003026908.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis P1/7] gi|253755355|ref|YP_003028495.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis BM407] gi|330833008|ref|YP_004401833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis ST3] gi|145689669|gb|ABP90175.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 05ZYH33] gi|145691877|gb|ABP92382.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 98HAH33] gi|223898528|gb|EEF64892.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591] gi|251816233|emb|CAZ51860.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus suis SC84] gi|251817819|emb|CAZ55572.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus suis BM407] gi|251820013|emb|CAR46187.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus suis P1/7] gi|292558520|gb|ADE31521.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus suis GZ1] gi|319758306|gb|ADV70248.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis JS14] gi|329307231|gb|AEB81647.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis ST3] Length = 319 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 68/317 (21%), Positives = 124/317 (39%), Gaps = 26/317 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ LT +E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLTAEEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++L + V A+ + P F E+VH+ ++ I ++L + E+ +++ Sbjct: 63 TLLDTLQSETGVQALRNDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTL-NTKSEIEDIF 121 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 S N LQ + + + TGT + V V E FY+GF L Sbjct: 122 EWTNS-----NEYLQRKAKIINEIYETGTPLEKK-------VASVFLETFLFYSGFFTPL 169 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NK+ +AE + I+RDES+H + E + + +L++ Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDKLRDWMYDLLYQLY 229 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 E Y VG ++++ AN+ +G +PLF + NP M+ + Sbjct: 230 ENEEGYTRSLY--DAVGWT-EEVLTFLRYNANKALMNLGQDPLFPDSADDVNPII-MNGI 285 Query: 327 IDLKKEKNFFETRVTEY 343 +FF Y Sbjct: 286 STGTSNHDFFSQVGNGY 302 >gi|15903110|ref|NP_358660.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae R6] gi|116517162|ref|YP_816517.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae D39] gi|148985789|ref|ZP_01818917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP3-BS71] gi|148990437|ref|ZP_01821595.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP6-BS73] gi|148999044|ref|ZP_01826476.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP11-BS70] gi|149008157|ref|ZP_01831676.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP18-BS74] gi|149026429|ref|ZP_01836566.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP23-BS72] gi|168483243|ref|ZP_02708195.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1873-00] gi|168486506|ref|ZP_02711014.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1087-00] gi|168491101|ref|ZP_02715244.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC0288-04] gi|168493105|ref|ZP_02717248.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC3059-06] gi|168577270|ref|ZP_02723064.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae MLV-016] gi|169833110|ref|YP_001694622.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae Hungary19A-6] gi|182684087|ref|YP_001835834.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae CGSP14] gi|194397329|ref|YP_002037788.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae G54] gi|225854653|ref|YP_002736165.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae JJA] gi|225856856|ref|YP_002738367.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae P1031] gi|225858968|ref|YP_002740478.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae 70585] gi|303255568|ref|ZP_07341620.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae BS455] gi|303260588|ref|ZP_07346554.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP-BS293] gi|303262722|ref|ZP_07348661.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP14-BS292] gi|303265256|ref|ZP_07351167.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS397] gi|303267603|ref|ZP_07353445.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS457] gi|303269940|ref|ZP_07355678.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS458] gi|307067834|ref|YP_003876800.1| ribonucleotide reductase subunit beta [Streptococcus pneumoniae AP200] gi|307127225|ref|YP_003879256.1| ribonucleoside-diphosphate reductase subunit beta [Streptococcus pneumoniae 670-6B] gi|15458689|gb|AAK99870.1| Nonessential ribonucleoside-diP reductase 2, subunit beta, class I, function unknown [Streptococcus pneumoniae R6] gi|116077738|gb|ABJ55458.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae D39] gi|147755114|gb|EDK62169.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP11-BS70] gi|147760396|gb|EDK67375.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae SP18-BS74] gi|147922093|gb|EDK73216.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP3-BS71] gi|147924289|gb|EDK75383.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP6-BS73] gi|147929260|gb|EDK80261.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP23-BS72] gi|168995612|gb|ACA36224.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae Hungary19A-6] gi|172043347|gb|EDT51393.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1873-00] gi|182629421|gb|ACB90369.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae CGSP14] gi|183570430|gb|EDT90958.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC1087-00] gi|183574343|gb|EDT94871.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC0288-04] gi|183576617|gb|EDT97145.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae CDC3059-06] gi|183577169|gb|EDT97697.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae MLV-016] gi|194356996|gb|ACF55444.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus pneumoniae G54] gi|225720498|gb|ACO16352.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae 70585] gi|225724090|gb|ACO19943.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae JJA] gi|225725515|gb|ACO21367.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae P1031] gi|301794279|emb|CBW36700.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae INV104] gi|301800116|emb|CBW32717.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae OXC141] gi|301801954|emb|CBW34682.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae INV200] gi|302597474|gb|EFL64568.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae BS455] gi|302636154|gb|EFL66650.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP14-BS292] gi|302638301|gb|EFL68770.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae SP-BS293] gi|302640522|gb|EFL70931.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS458] gi|302642869|gb|EFL73174.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS457] gi|302645227|gb|EFL75463.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus pneumoniae BS397] gi|306409371|gb|ADM84798.1| Ribonucleotide reductase, beta subunit [Streptococcus pneumoniae AP200] gi|306484287|gb|ADM91156.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae 670-6B] gi|332074795|gb|EGI85267.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA41301] gi|332075112|gb|EGI85583.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA17545] gi|332200632|gb|EGJ14704.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA41317] gi|332201651|gb|EGJ15721.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA47368] gi|332203034|gb|EGJ17102.1| ribonucleotide reductase, small chain family protein [Streptococcus pneumoniae GA47901] Length = 320 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 121/319 (37%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + L+ V E FY+GF Sbjct: 123 WTNTNPYLQKKAEIVNEIY--------------LNGSPLEKKV-ASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|148543559|ref|YP_001270929.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri DSM 20016] gi|184152966|ref|YP_001841307.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri JCM 1112] gi|227363481|ref|ZP_03847603.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri MM2-3] gi|325681909|ref|ZP_08161427.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri MM4-1A] gi|148530593|gb|ABQ82592.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactobacillus reuteri DSM 20016] gi|183224310|dbj|BAG24827.1| ribonucleotide diphosphate reductase beta subunit [Lactobacillus reuteri JCM 1112] gi|227071495|gb|EEI09796.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri MM2-3] gi|324978553|gb|EGC15502.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri MM4-1A] Length = 339 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 68/324 (20%), Positives = 122/324 (37%), Gaps = 28/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +D+ W+ L DD + + G Sbjct: 16 NWNEVSDMIDKATWEKL---TEQFWLDTRIPVANDMDDWR---ELDDDHQWTVGHVFGGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + A+ + P L F E+VH+ ++ I ++L + E+F Sbjct: 70 TLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIKEIFE 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA D Q+ L+ V E FY+GF Sbjct: 130 WSDTEEYLQNKAVKIANMY------------LDPSQDPLKKKV-ANVFLETFLFYSGFYT 176 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + + ++ + L+E Sbjct: 177 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGLRDRTEKQQQDMKDWMYNFLYE 236 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y H + VG ++++ AN+ +G +PLF T NP M+ Sbjct: 237 LYDNEEKYTH--LLYDQVGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 292 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348 + +FF Y+ GA Sbjct: 293 GISTSTSNHDFFSQVGNGYRMGAV 316 >gi|221231890|ref|YP_002511042.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae ATCC 700669] gi|220674350|emb|CAR68896.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pneumoniae ATCC 700669] Length = 320 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 124/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALREDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + + G+ + V V E FY+GF Sbjct: 123 WTNTNPYLQKKAE--------IVNEIYLNGSPLEKK-------VASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|149004132|ref|ZP_01828935.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP14-BS69] gi|237649545|ref|ZP_04523797.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae CCRI 1974] gi|237822455|ref|ZP_04598300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae CCRI 1974M2] gi|147757865|gb|EDK64875.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pneumoniae SP14-BS69] Length = 320 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 121/319 (37%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V A+ + P F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVQALRADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + KA + + L+ V E FY+GF Sbjct: 123 WTNTNPYLQKKAEIVNEIY--------------LNGSPLEKKV-ASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ ++ +L+ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYT 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG + ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEEGYTESLYDG--VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|75758223|ref|ZP_00738348.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494277|gb|EAO57368.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 342 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 124/309 (40%), Gaps = 16/309 (5%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y W+ E+P+ D +W + L D++ + K+ LG ++ + + Sbjct: 29 YNQMRQQFWLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLVS 85 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163 H+ +P+ + + A E +H+ ++ +I +L +E +F+ E P + KA+ Sbjct: 86 LHMEDPQKKAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADIIT 145 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + + L P D D + L V V E FY+GF L L ++ E Sbjct: 146 GHYRKLLKP-------DVDPKELYMAIVASVFLESFLFYSGFFYPLFLAGQGQLTASGEI 198 Query: 224 YQYIMRDESLHL-NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDE++H GI + + +E +++ +L E+ Y ++ Sbjct: 199 IALILRDEAIHGVTGGIFAQEIYENQLTEAEQQEVDKEAIQLLEMLYANELDYTNDVY-A 257 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETRVT 341 +++++ AN+ +G + F NP + + K+ +FF + Sbjct: 258 PLGKDMIEEVNKFLRYNANKAMMNLGYDQYFDDEYVNPIVQ-NGLQTKTKQHDFFSVKGN 316 Query: 342 EYQQGAELK 350 Y + ++ Sbjct: 317 GYVKAINVE 325 >gi|269865568|ref|XP_002651969.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063399|gb|EED42087.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 251 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 20/230 (8%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E FN +PSI KA WA ++ A V + EG Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWI--------------ASDTSFDTRCVAFACVEG 188 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 ++F FA I L + M G+ + I RDE LH +F + I + Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNK 238 >gi|302023955|ref|ZP_07249166.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus suis 05HAS68] Length = 320 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 68/317 (21%), Positives = 124/317 (39%), Gaps = 26/317 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ LT +E+ ++ + G Sbjct: 10 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLTAEEKDLVGKVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++L + V A+ + P F E+VH+ ++ I ++L + E+ +++ Sbjct: 64 TLLDTLQSETGVQALRNDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTL-NTKSEIEDIF 122 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 S N LQ + + + TGT + V V E FY+GF L Sbjct: 123 EWTNS-----NEYLQRKAKIINEIYETGTPLEKK-------VASVFLETFLFYSGFFTPL 170 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NK+ +AE + I+RDES+H + E + + +L++ Sbjct: 171 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDKLRDWMYDLLYQLY 230 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 E Y VG ++++ AN+ +G +PLF + NP M+ + Sbjct: 231 ENEEGYTRSLY--DAVGWT-EEVLTFLRYNANKALMNLGQDPLFPDSADDVNPII-MNGI 286 Query: 327 IDLKKEKNFFETRVTEY 343 +FF Y Sbjct: 287 STGTSNHDFFSQVGNGY 303 >gi|222153355|ref|YP_002562532.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus uberis 0140J] gi|222114168|emb|CAR42683.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus uberis 0140J] Length = 319 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 120/319 (37%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA A+ + LQ E FY+GF Sbjct: 123 WTNNNEFLQKKAKIINDIY--------------ANGDALQKKV-ASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E + F++ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDKQESFREWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEEEYTKTLY--DPVGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|194468106|ref|ZP_03074092.1| Ribonucleoside-diphosphate reductase [Lactobacillus reuteri 100-23] gi|194452959|gb|EDX41857.1| Ribonucleoside-diphosphate reductase [Lactobacillus reuteri 100-23] Length = 339 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 68/324 (20%), Positives = 122/324 (37%), Gaps = 28/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +D+ W+ L DD + + G Sbjct: 16 NWNEVSDMIDKATWEKL---TEQFWLDTRIPVANDMDDWR---ELDDDHQWTVGHVFGGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + A+ + P L F E+VH+ ++ I ++L + E+F Sbjct: 70 TLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIKEIFE 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA D Q+ L+ V E FY+GF Sbjct: 130 WSDTEEYLQNKAVKIANMY------------LDPSQDPLKKKV-ANVFLETFLFYSGFYT 176 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + + ++ + L+E Sbjct: 177 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGLRDRTEKQQQDMKDWMYNFLYE 236 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y H + VG ++++ AN+ +G +PLF T NP M+ Sbjct: 237 LYDNEEKYTH--LLYDQVGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 292 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348 + +FF Y+ GA Sbjct: 293 GISTSTSNHDFFSQVGNGYRMGAV 316 >gi|227545165|ref|ZP_03975214.1| ribonucleoside-diphosphate reductase [Lactobacillus reuteri CF48-3A] gi|300909160|ref|ZP_07126621.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri SD2112] gi|227184848|gb|EEI64919.1| ribonucleoside-diphosphate reductase [Lactobacillus reuteri CF48-3A] gi|300893025|gb|EFK86384.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus reuteri SD2112] Length = 339 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 68/324 (20%), Positives = 122/324 (37%), Gaps = 28/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +D+ W+ L DD + + G Sbjct: 16 NWNEVSDMIDKATWEKL---TEQFWLDTRIPVANDMDDWR---ELDDDHQWTVGHVFGGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + A+ + P L F E+VH+ ++ I ++L + E+F Sbjct: 70 TLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIKEIFE 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA D Q+ L+ V E FY+GF Sbjct: 130 WSDTEEYLQNKAVKIANMY------------LDPSQDPLKKKV-ANVFLETFLFYSGFYT 176 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + + ++ + L+E Sbjct: 177 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGLRDRTEKQQQDMKDWMYNFLYE 236 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y H + VG ++++ AN+ +G +PLF T NP M+ Sbjct: 237 LYDNEEKYTH--LLYDQVGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 292 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348 + +FF Y+ GA Sbjct: 293 GISTSTSNHDFFSQVGNGYRMGAV 316 >gi|15675308|ref|NP_269482.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes M1 GAS] gi|21910586|ref|NP_664854.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS315] gi|28895723|ref|NP_802073.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes SSI-1] gi|71910937|ref|YP_282487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS5005] gi|94988801|ref|YP_596902.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS9429] gi|94992686|ref|YP_600785.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS2096] gi|306826388|ref|ZP_07459706.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes ATCC 10782] gi|13622486|gb|AAK34203.1| ribonucleotide diphosphate reductase small subunit [Streptococcus pyogenes M1 GAS] gi|21904787|gb|AAM79657.1| putative ribonucleoside-diphosphate reductase 2 beta subunit [Streptococcus pyogenes MGAS315] gi|28810972|dbj|BAC63906.1| putative ribonucleotide diphosphate reductase, small subunit [Streptococcus pyogenes SSI-1] gi|71853719|gb|AAZ51742.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS5005] gi|94542309|gb|ABF32358.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS9429] gi|94546194|gb|ABF36241.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS2096] gi|304431419|gb|EFM34410.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes ATCC 10782] Length = 319 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 70/330 (21%), Positives = 124/330 (37%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA A+ + LQ E FY+GF Sbjct: 123 WTNNNEFLQEKARIINDIY--------------ANGDALQKKV-ASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + F+ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEEKYTKTLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G+ + D Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313 >gi|326536452|ref|YP_004300883.1| NrdB aerobic ribonucleoside diphosphate reductase small subunit [Aeromonas phage 65] gi|312262798|gb|ADQ53054.1| NrdB aerobic ribonucleoside diphosphate reductase small subunit [Aeromonas phage 65] Length = 376 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 63/344 (18%), Positives = 131/344 (38%), Gaps = 24/344 (6%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S + + + +V + +K ++ + W PTE+ M D Sbjct: 3 STVFNTNIVDHTNQHMFFGEEPNVQRFDTMKTRVFYDLMDRQLSFFWRPTEIDMSKDSIQ 62 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE-AV 126 + L+D + + +NL + +S+ L + H+S+ ++ E + Sbjct: 63 FHQ---LSDHAKHVYTQNLFVQSLLDSIQGRGPNLVLLPHVSDVTLENFITAWTMVEGTI 119 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS--------------SP 172 HS ++ +++ ++ + E+F+ P I +A +Y + Sbjct: 120 HSDSYTHMVRAVYPNPTEVFDQVMLTPEIMKRAEAITKYYDAVLLESDKLSAMKFLNLDE 179 Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDE 231 S +E L E + FY F S M G A+ ++I RDE Sbjct: 180 SVLNSQLTKLKESLYLCVHTINALEAIRFYVSFICNFSFPEFSGTMEGSAKIMKFIARDE 239 Query: 232 SLHLNFGIDVINQIK--IENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKGFVG- 286 +LHL +I++ + ++P + K + K+ ++ E E +A M + Sbjct: 240 NLHLKATQTIISRWQTGKDDPEMVEIAKRLEGKAVSIFEEVVAQEKEWAEYLMGDKSLNG 299 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330 LN Y++++A+ R GL + +NP PW+++ ++ Sbjct: 300 LNRDVLCNYIEYLADNRMRSAGLPSSYAKRKNPLPWVTKWLNSD 343 >gi|228476905|ref|ZP_04061550.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus salivarius SK126] gi|228251479|gb|EEK10624.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus salivarius SK126] Length = 319 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 123/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ WEK W+ T +P+ +DL W+ L+ +E+ ++ + G Sbjct: 9 NWNEIEDAIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSQTGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + GT + V E FY+GF Sbjct: 123 WTNSNEYLQTKA--------KIINDIYENGTPLQKK-------VASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + F++ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQESFREWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEELYTKSLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDSANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|94990703|ref|YP_598803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10270] gi|94544211|gb|ABF34259.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10270] Length = 320 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 70/330 (21%), Positives = 124/330 (37%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 10 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 64 TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA A+ + LQ E FY+GF Sbjct: 124 WTNNNEFLQEKARIINNIY--------------ANGDALQKKV-ASTYLETFLFYSGFFT 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + F+ +L++ Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQ 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF T NP M+ Sbjct: 229 LYENEEKYTKTLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G+ + D Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGSVEAMSDD 314 >gi|116490256|ref|YP_809800.1| ribonucleotide-diphosphate reductase subunit beta [Oenococcus oeni PSU-1] gi|290889638|ref|ZP_06552728.1| hypothetical protein AWRIB429_0118 [Oenococcus oeni AWRIB429] gi|116090981|gb|ABJ56135.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Oenococcus oeni PSU-1] gi|290480836|gb|EFD89470.1| hypothetical protein AWRIB429_0118 [Oenococcus oeni AWRIB429] Length = 337 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 117/328 (35%), Gaps = 27/328 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 DK+ D + + W+ T +P+ +D+ W+S L E Sbjct: 3 DKKNQFTHYDAINWNKVIDPIDKATWEKLTEQFWLDTRIPISNDMKDWRS---LGPVEHK 59 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + G ++L + + + ++ P R L F E+VH+ ++ I +L Sbjct: 60 LYDHVFGGLTMLDTLQSQDGMASLLDAAVTPHERAVLNNIKFMESVHAKSYSSIFETLDT 119 Query: 141 DE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E+F+ + + KAN D + L+ V E Sbjct: 120 PAEIDEIFDWASKNEQLQYKANKINSVYH--------------DPDPLKRKI-ASVFLET 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 FY+GF L NKM +AE + I+RDES+H + E K+ Sbjct: 165 FLFYSGFYTPLYFVGHNKMANVAEIIKLIIRDESVHGTYIGYKFQLAYKELTEQEQKDLN 224 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KY 315 + +L++ E Y H+ + + ++++ N+ +GLEP+F Sbjct: 225 SWAYDLLYDLYDNEEKYTHQLYDE--IDW-FDDVMIFLRYNGNKALMNLGLEPMFADGAE 281 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEY 343 NP M+ + +FF Y Sbjct: 282 DVNPVV-MNGISTSTANHDFFSQVGNGY 308 >gi|313884792|ref|ZP_07818546.1| ribonucleoside-diphosphate reductase, beta subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619991|gb|EFR31426.1| ribonucleoside-diphosphate reductase, beta subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 363 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 117/319 (36%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W+ L+ E+ M+ + G Sbjct: 10 NWNDIEDVIDKLTWEKL---TEQFWLDTRIPVSNDLDDWR---RLSKAEQDMVGKVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + + R L F E+VH+ ++ I +L + +F Sbjct: 64 TLLDTVQSEQGAIVLLPDARTSHERSVLSNIHFMESVHAKSYSTIFITLNTNAEIDAIFE 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 I K++ + Q TGT + V+ E FY+GF Sbjct: 124 WTDTHELIQFKSDKINRIYQ--------TGTPLQKK-------AASVLLESFLFYSGFYA 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + +E +Q + E Sbjct: 169 PLWYLGNNKLPNVAEIIKLILRDESVHGTYIGYKFQLGYNALSETDQEELKQWVFNLCFE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + +G ++++ AN+ +G +PLF T NP M+ Sbjct: 229 LYSNEEKYTSYIYDE--LGWT-EEVNTFVRYNANKALQNLGFDPLFADTAEDVNPIV-MN 284 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 285 GISTGTSNHDFFSQVGNGY 303 >gi|22536982|ref|NP_687833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae 2603V/R] gi|25010891|ref|NP_735286.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae NEM316] gi|76788606|ref|YP_329564.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae A909] gi|76799231|ref|ZP_00781405.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 18RS21] gi|77405557|ref|ZP_00782648.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae H36B] gi|77408849|ref|ZP_00785576.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae COH1] gi|77413113|ref|ZP_00789313.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 515] gi|22533837|gb|AAM99705.1|AE014229_6 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus agalactiae 2603V/R] gi|23095270|emb|CAD46480.1| Unknown [Streptococcus agalactiae NEM316] gi|76563663|gb|ABA46247.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus agalactiae A909] gi|76585414|gb|EAO61998.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 18RS21] gi|77160814|gb|EAO71925.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 515] gi|77172535|gb|EAO75677.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae COH1] gi|77175864|gb|EAO78642.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae H36B] gi|319744839|gb|EFV97177.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae ATCC 13813] Length = 319 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 121/319 (37%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + G + V E FY+GF Sbjct: 123 WTNNNEFLQEKA--------RIINDIYANGNALQKK-------VASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + F+ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEEKYTKTLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|325977861|ref|YP_004287577.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177789|emb|CBZ47833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 320 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 67/330 (20%), Positives = 126/330 (38%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ +E+ ++ + G Sbjct: 10 NWNEIEDIIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + + V AI + P L F E+VH+ ++ I ++L + +F Sbjct: 64 TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEAIFE 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + G + V E FY+GF Sbjct: 124 WTNSNDCLQKKA--------KIINDIYENGDALQKK-------VASTFLETFLFYSGFFT 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E F++ +L++ Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDNFREWMYDLLYQ 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF T NP M+ Sbjct: 229 LYENEENYTKSLYDG--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G+ ++ D Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGSVEAMQDD 314 >gi|19746348|ref|NP_607484.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS8232] gi|50914444|ref|YP_060416.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10394] gi|71903783|ref|YP_280586.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS6180] gi|94994624|ref|YP_602722.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10750] gi|139473584|ref|YP_001128300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes str. Manfredo] gi|19748543|gb|AAL97983.1| ribonucleotide diphosphate reductase small subunit [Streptococcus pyogenes MGAS8232] gi|50903518|gb|AAT87233.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10394] gi|71802878|gb|AAX72231.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS6180] gi|94548132|gb|ABF38178.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10750] gi|134271831|emb|CAM30066.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes str. Manfredo] Length = 319 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 70/330 (21%), Positives = 124/330 (37%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA A+ + LQ E FY+GF Sbjct: 123 WTNNNEFLQEKARIINNIY--------------ANGDALQKKV-ASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + F+ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEEKYTKTLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G+ + D Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313 >gi|312864696|ref|ZP_07724927.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] gi|311099823|gb|EFQ58036.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] Length = 319 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 122/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L++ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSEAEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V AI + L F E+VH+ ++ I ++L + E+F+ Sbjct: 63 TLLDTMQSQTGVEAIRGDIRTQHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFD 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + G + V E FY+GF Sbjct: 123 WTNNNEYLQKKAE--------IINEIYLHGGALQKK-------VASTFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E EF+ +L++ Sbjct: 168 PLYYLGNNKLSNVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQSEFRDWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + VG ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEELYTKTLYDE--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|158079504|ref|YP_001504317.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C] gi|157890348|dbj|BAF81476.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C] Length = 327 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 70/317 (22%), Positives = 125/317 (39%), Gaps = 26/317 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + W+K W+ T VP+ +D+ W L+D E+ +I + G Sbjct: 11 NWNKIDDVIDQATWKKL---TEQFWLDTRVPVGNDVNDWA---KLSDMEQDLINKVFGGL 64 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ + + V ++ + L AF EAVH+ ++ I ++ E+ N++ Sbjct: 65 TLLDTVQSESGVHSLLDDVRTQHEEAVLNNIAFMEAVHAKSYSTIFSTF-NTPTEIDNIF 123 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 V N LQY + + + GT + V+ E FY+GF L Sbjct: 124 EWVA-----TNKRLQYKANIINDIYRNGTPLQKK-------SASVLLESFLFYSGFYTPL 171 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 KMV AE + I+RDES+H + + P KE +Q + + Sbjct: 172 RYLGEAKMVNTAEIIKLIIRDESVHGTYIGYKYQLGFNQLPETEQKEMEQWVIDLAFKLW 231 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 E Y E + +G ++++ N+ +G+ PLF T NP M+ + Sbjct: 232 ENETQYTAELYSE--IGWT-KDVNTFLEYNLNKALANLGMNPLFPTTSADVNPIV-MNGI 287 Query: 327 IDLKKEKNFFETRVTEY 343 +FF Y Sbjct: 288 STTTSNHDFFSQVGNGY 304 >gi|312862767|ref|ZP_07723007.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus vestibularis F0396] gi|322516573|ref|ZP_08069487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus vestibularis ATCC 49124] gi|311101627|gb|EFQ59830.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus vestibularis F0396] gi|322124843|gb|EFX96267.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus vestibularis ATCC 49124] Length = 320 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 122/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDAIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSQTGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + GT + V E FY+GF Sbjct: 123 WTNSNKYLQTKA--------KIINDIYENGTPLQKK-------VASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + F++ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQESFREWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEELYTKSLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDSANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|55821276|ref|YP_139718.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus thermophilus LMG 18311] gi|55823189|ref|YP_141630.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus thermophilus CNRZ1066] gi|116628014|ref|YP_820633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus thermophilus LMD-9] gi|55737261|gb|AAV60903.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus thermophilus LMG 18311] gi|55739174|gb|AAV62815.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus thermophilus CNRZ1066] gi|116101291|gb|ABJ66437.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Streptococcus thermophilus LMD-9] gi|312278606|gb|ADQ63263.1| Ribonucleoside-diphosphate reductase class Ib beta subunit [Streptococcus thermophilus ND03] Length = 320 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 123/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ WEK W+ T +P+ +DL W+ L+ +E+ ++ + G Sbjct: 9 NWNEIEDAIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSQTGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + GT + V E FY+GF Sbjct: 123 WTNSNKYLQTKA--------KIINDIYENGTALQKK-------VASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + F++ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEKEQESFREWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF + NP M+ Sbjct: 228 LYENEELYTKSLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDSANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|24379140|ref|NP_721095.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus mutans UA159] gi|290580850|ref|YP_003485242.1| putative ribonucleotide reductase small subunit [Streptococcus mutans NN2025] gi|24377045|gb|AAN58401.1|AE014910_5 putative ribonucleotide reductase, small subunit [Streptococcus mutans UA159] gi|254997749|dbj|BAH88350.1| putative ribonucleotide reductase small subunit [Streptococcus mutans NN2025] Length = 319 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 118/319 (36%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAAEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + + V AI + P L F E+VH+ ++ I ++L + +F Sbjct: 63 TLLDTMQSQSGVEAIRGDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEGIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + ++ E FY+GF Sbjct: 123 WTNNNEYLQKKAKIINEIYENGNALQKKV---------------ASTFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E EF+ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQSEFRDWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEELYTQTLY--DPVGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|269468252|gb|EEZ79942.1| ribonucleotide-diphosphate reductase subunit beta [uncultured SUP05 cluster bacterium] Length = 319 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 69/297 (23%), Positives = 127/297 (42%), Gaps = 23/297 (7%) Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 L +E+ + NL + +S+ + +A +S PE ++ +F E +HS Sbjct: 2 DFAKLLPNEKHIFISNLQYQILLDSVQGRSPNIAFLPIVSLPELENWIETWSFSETIHSR 61 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-- 182 ++ +II ++ + G +F+ + I +A ++ L + G D Sbjct: 62 SYTHIIRAIVNEPGVVFDDIMKTDKIIQRAESVSKHYDELIKCTQAYLLHGEGKLQIDGK 121 Query: 183 ---------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 + L + + E + FY FA + M G A+ + I RDE+L Sbjct: 122 NADVDLYCLKRQLYLTVMSVNILEAVRFYVSFACSFAFAERKVMEGNAKIIKMIARDEAL 181 Query: 234 HLNFGIDVINQIKIE----NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288 HL ++N ++ + KE + + M EA E +A G +GLN Sbjct: 182 HLTGTQHMLNLMRDGKDDPDMEKIAKECENEVIQMFKEACEQEKDWAEYLFRDGSMIGLN 241 Query: 289 APSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKEKNF-FETRVTEY 343 A +QY+++I N R + +GL+P+F ++ NP PW++ +D + ET +T Y Sbjct: 242 ADILKQYLEYITNVRMNALGLKPIFDEHVTNPLPWINSWLDSDNVQVAPQETEITSY 298 >gi|227510692|ref|ZP_03940741.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513708|ref|ZP_03943757.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus buchneri ATCC 11577] gi|227522501|ref|ZP_03952550.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus hilgardii ATCC 8290] gi|227083027|gb|EEI18339.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus buchneri ATCC 11577] gi|227090323|gb|EEI25635.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus hilgardii ATCC 8290] gi|227189813|gb|EEI69880.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 318 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 60/303 (19%), Positives = 115/303 (37%), Gaps = 26/303 (8%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + W+ T +P+ +DL+ W++ L D + ++ G ++L + + ++ Sbjct: 22 WEKLTEQFWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGMASLR 78 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163 + + P L F E+VH+ ++ I ++L E E+F+ + KA Sbjct: 79 KDVQTPHETAVLNNIQFMESVHAKSYSSIFSTLNTPEQIDEIFDWSDTEEFLQNKALKIR 138 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + P + V E FY+GF L NK+ +AE Sbjct: 139 DIYENNPDP--------------LKKKIASVFLETFLFYSGFYTPLWYLGHNKIPNVAEI 184 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + I+RDES+H + + P ++ + +L++ E Y H + Sbjct: 185 IKLILRDESVHGTYIGYKFQIGFNQLPKTKQEDLKNWLYDLLYKLYANEEKYTH--LLYD 242 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340 G ++++ AN+ +G +PLF T NP M+ + +FF Sbjct: 243 QTGWT-DDVLVFIRYNANKALMNLGQDPLFPDTAEDVNPVV-MNGISTSTANHDFFSQVG 300 Query: 341 TEY 343 Y Sbjct: 301 NGY 303 >gi|77410697|ref|ZP_00787056.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae CJB111] gi|77163233|gb|EAO74185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae CJB111] Length = 319 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 121/319 (37%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + + AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSETGIEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + G + V E FY+GF Sbjct: 123 WTNNNEFLQEKA--------RIINDIYANGNALQKK-------VASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + F+ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEEKYTKTLYDG--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|118586508|ref|ZP_01543952.1| ribonucleoside-diphosphate reductase 2, beta subunit [Oenococcus oeni ATCC BAA-1163] gi|118433072|gb|EAV39794.1| ribonucleoside-diphosphate reductase 2, beta subunit [Oenococcus oeni ATCC BAA-1163] Length = 337 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 117/328 (35%), Gaps = 27/328 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 DK+ D + + W+ T +P+ +D+ W+S + E Sbjct: 3 DKKNQFTHYDAINWNKVIDPIDKATWEKLTEQFWLDTRIPISNDMKDWRSLGLV---EHK 59 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + G ++L + + + ++ P R L F E+VH+ ++ I +L Sbjct: 60 LYDHVFGGLTMLDTLQSQDGMASLLDAAVTPHERAVLNNIKFMESVHAKSYSSIFETLDT 119 Query: 141 DE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 E+F+ + + KAN D + L+ V E Sbjct: 120 PAEIDEIFDWASKNEQLQYKANKINSVYH--------------DPDPLKRKI-ASVFLET 164 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 FY+GF L NKM +AE + I+RDES+H + E KE Sbjct: 165 FLFYSGFYTPLYFVGHNKMANVAEIIKLIIRDESVHGTYIGYKFQLAYKELTEQEQKELN 224 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KY 315 + +L++ E Y H+ + + ++++ N+ +GLEP+F Sbjct: 225 SWAYDLLYDLYDNEEKYTHQLYDE--IDW-FDDVMIFLRYNGNKALMNLGLEPMFADGAE 281 Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEY 343 NP M+ + +FF Y Sbjct: 282 DVNPVV-MNGISTSTANHDFFSQVGNGY 308 >gi|154283275|ref|XP_001542433.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1] gi|150410613|gb|EDN06001.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1] Length = 255 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 23/215 (10%) Query: 2 ANNTGLSPIQAGEKRVN-----VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56 + P + +K + D+ +L + L PLKY W+ Y A + W Sbjct: 54 TETSARKPEEGEKKALTGVKALEADEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTA 113 Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 E+ + DL W N L DDER I L FFA+S+ +V N+V + PE R + Sbjct: 114 EEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCF 171 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPS 173 Q E +HS T+ +I + + + F+ +P I KA+WA+++ + Sbjct: 172 YGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIETIPCIRKKADWAIRWIE------ 225 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 D D F Q L F V EG++F FA I Sbjct: 226 ------DKDSTFAQRLVAFAAV-EGIFFSGSFASI 253 >gi|332523715|ref|ZP_08399967.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus porcinus str. Jelinkova 176] gi|332314979|gb|EGJ27964.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus porcinus str. Jelinkova 176] Length = 319 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 68/330 (20%), Positives = 129/330 (39%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+D E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + ++F Sbjct: 63 TLLDTMQSETGVEAIRADIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEDIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + G + V E FY+GF Sbjct: 123 WTNNNEFLQKKA--------KIINDIYANGNALQKK-------VASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E + F++ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQESFREWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E +Y + VG ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEESYTKTLYDQ--VGWTDEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G+ ++ D Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMQDD 313 >gi|38639969|ref|NP_943924.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1] gi|33414658|gb|AAQ17701.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1] Length = 376 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 63/316 (19%), Positives = 117/316 (37%), Gaps = 25/316 (7%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +K+ + + W P EV + D + N L++ E+ + +NL + + +S+ Sbjct: 31 VKHPAIDKLTEKQLSFFWRPEEVDLSKDAIDY---NQLSEAEQHVFTQNLKYQSLLDSVQ 87 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 L +S+ ++ +F E +HS ++ +I+ +L +D +F+ I Sbjct: 88 GRAPNLVFLPIVSDVALETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDSKIM 147 Query: 157 AKANWALQYTQTLSS--------------PSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 A+A QY L P +E L E + FY Sbjct: 148 ARATSVTQYYDNLIKELKTYDLLTQSVFSPELRVAQLTKVKEALYLAMHAVNALEAIRFY 207 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQ 258 FA S G M G A+ + I RDE LHL +I + E + Sbjct: 208 VSFACTFSFGERGIMEGNAKIMRLIARDEQLHLKGTQYLIRAWQNAEDDSEMYEIAKRLE 267 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316 K+ + E E +A + + + L+ S Y+ ++ R GL + Sbjct: 268 HKAVQIFLEVAEQEKEWARDLLGNVTIPGLSLSSMLDYIDYLTVSRMRSAGLPAPEELNI 327 Query: 317 --ENPFPWMSEVIDLK 330 ++P PW+ + ++ Sbjct: 328 GMKHPLPWIRKWLNSD 343 >gi|325103985|ref|YP_004273639.1| ribonucleotide reductase [Pedobacter saltans DSM 12145] gi|324972833|gb|ADY51817.1| ribonucleotide reductase [Pedobacter saltans DSM 12145] Length = 324 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 75/320 (23%), Positives = 131/320 (40%), Gaps = 18/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + + + W+ +E+ D + S L+ +E+ IKR+L A Sbjct: 7 RINYKPFEYPEVLDFTNAINKSFWVHSEIDFTADTQDFHS--HLSTNEKESIKRSLLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V + +Y HL PE A E HS + ++ LG + F Sbjct: 65 QIEVNV-KSFWGNLYNHLPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNNE--FEKVI 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E+P I + + S + D + +++ L +F ++ E + ++ FA ILS Sbjct: 122 EIPVIKKRIAYL--------SNALKDTKSDDKKAYIKSLILFTILIENVSLFSQFAIILS 173 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 R M ++ + DE LH N GI +IN+IK E P + +Q+ ++ E+ Sbjct: 174 FTRFQGVMKNVSNIIAWTSIDEQLHANAGIYIINKIKEEFPEYIDEAVEQEIYDIVTESI 233 Query: 270 LLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325 +E G + +N +M++ + QIG + L+ +E +P W E Sbjct: 234 NIEDEILGWIFENGDLEHINRRDLLNFMKYRIDVSLQQIGFKKLYNVSETEYSPMVWFEE 293 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 I +FF R EY + Sbjct: 294 EIFANSLDDFFAKRPVEYTK 313 >gi|229552273|ref|ZP_04440998.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus LMS2-1] gi|258539683|ref|YP_003174182.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus Lc 705] gi|229314345|gb|EEN80318.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus LMS2-1] gi|257151359|emb|CAR90331.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus rhamnosus Lc 705] Length = 326 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 67/330 (20%), Positives = 125/330 (37%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + WEK W+ T +P+ +DL W+S L+ DE+ ++ G Sbjct: 9 NWNAIEDEVDKATWEKL---TEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++L + + + ++ +++ + L F E+VH+ ++ I ++L E+F+ Sbjct: 63 TLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFD 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KAN S+ V E FY+GF Sbjct: 123 WTNHNEHLQYKANKINDIYHNGSALQKKI---------------ASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ Q +L++ Sbjct: 168 PLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQQQLQDWMYDLLYD 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y ++ K ++++ AN+ +G E F T NP M+ Sbjct: 228 LYENEEKYTNDLYAK--TKWT-DEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y+ G ++ D Sbjct: 284 GISTSTANHDFFSQVGNGYRLGQVEAMEDD 313 >gi|258508470|ref|YP_003171221.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus GG] gi|257148397|emb|CAR87370.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus rhamnosus GG] gi|259649782|dbj|BAI41944.1| ribonucleotide reductase beta subunit [Lactobacillus rhamnosus GG] Length = 326 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 67/330 (20%), Positives = 125/330 (37%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + WEK W+ T +P+ +DL W+S L+ DE+ ++ G Sbjct: 9 NWNAIEDEVDKATWEKL---TEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++L + + + ++ +++ + L F E+VH+ ++ I ++L E+F+ Sbjct: 63 TLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFD 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KAN S+ V E FY+GF Sbjct: 123 WTNHNEHLQYKANKINDIYHNGSALQKKI---------------ASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ Q +L++ Sbjct: 168 PLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQQQLQDWMYDLLYD 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y ++ K ++++ AN+ +G E F T NP M+ Sbjct: 228 LYENEEKYTNDLYAK--TKWT-DEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y+ G ++ D Sbjct: 284 GISTSTANHDFFSQVGNGYRLGQVEAMEDD 313 >gi|163791218|ref|ZP_02185634.1| ribonucleotide-diphosphate [Carnobacterium sp. AT7] gi|159873488|gb|EDP67576.1| ribonucleotide-diphosphate [Carnobacterium sp. AT7] Length = 320 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 124/318 (38%), Gaps = 28/318 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK + W T +P+ +DL W L E+ M+ + G Sbjct: 9 NWNNIEDMIDKLTWEKLVE---QFWTDTRIPVSNDLDDWA---RLPKAEKDMVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + V A+ + F E++H+ ++ I ++L + E+F Sbjct: 63 TLLDTLQSQDGVQALKPFIRTQHEEAVYNNIQFMESMHAKSYSAIFSTLNSKVEIDEIFQ 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 N LQ + + + GT+ + V V+ E FY+GF Sbjct: 123 WTNT--------NDLLQIKASTINDIYQNGTELQRK-------VASVMLESFLFYSGFFA 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + + P +E + + +L + Sbjct: 168 PLHYLGNNKLPNVAEIIKLILRDESVHGTYIGYKFQIAYNQLPDNEKEEMKNWTYELLFK 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325 E+ YA + +G + ++++ AN+ +G +PLF T N M+ Sbjct: 228 LYQNEVKYAEYLYDE--IGWT-ERVKVFLRYNANKALQNLGFDPLFPDTANDVDPVIMNG 284 Query: 326 VIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 285 ISTGTSNHDFFSQVGNGY 302 >gi|332292139|ref|YP_004430748.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170225|gb|AEE19480.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 425 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 139/338 (41%), Gaps = 18/338 (5%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R KR N L P +Y ++ + +++W+ TE D+ +K++ +T Sbjct: 93 RDEQAQKRKTNIFEKRINLKPYEYPQLYDYVPAIRHSYWIHTEYNFTSDIQDFKTR--IT 150 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 D ER IK + + E V IY + PE A E H+ + +++ Sbjct: 151 DVERSAIKNTMLAISQIEVAV-KGFWGDIYHKMPKPEVGAVGATFAESEVRHADAYSHLL 209 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 LGL++ F + ++ P + + + + + ++E+ + + +F + Sbjct: 210 EILGLNKE--FKLLKKKPVMMKRVQYL--------ETALKNAKSEDNKEYSESILLFSLF 259 Query: 196 FEGMWFYTGFAQILSLGRANKM-VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 E + ++ F I++ + M GI+ + ++E +H +FGID+I IK ENP + Sbjct: 260 IEHVSLFSQFLIIMAFNKHKNMLKGISNVVEATSKEEQIHGDFGIDIIKIIKAENPEWFD 319 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLF 313 E + M EA E G + ++++ N+ IG+EP+F Sbjct: 320 AEHSATVQEMCKEAFKAESNIVDWIFEAGELDFLPKALVNEFIKDRFNKSLTSIGIEPVF 379 Query: 314 KYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQGAE 348 + E W + I K +FF R Y + A+ Sbjct: 380 EVDETLLKDAEWFDDEIIGTKHGDFFVKRSVNYTKRAQ 417 >gi|213419183|ref|ZP_03352249.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 305 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 55/292 (18%), Positives = 107/292 (36%), Gaps = 26/292 (8%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P + KA L + E L+ V E FY+GF + Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPMY 171 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKLFALDLLMELYD 231 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP 319 EI Y + G + ++ + AN+ +G E LF NP Sbjct: 232 NEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNP 280 >gi|294661479|ref|YP_003579932.1| NrdB ribonucleotide reductase B subunit [Klebsiella phage KP15] gi|292660640|gb|ADE34888.1| NrdB ribonucleotide reductase B subunit [Klebsiella phage KP15] Length = 402 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 66/354 (18%), Positives = 128/354 (36%), Gaps = 36/354 (10%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L+ + ++D + V + K+ + W P EV + D Sbjct: 13 LTVMNTNPDHNHLDQPMFFGEDTGVARYESQKHKVFESLTQKQLSFFWRPEEVDLSTDRM 72 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + L + E+++ NL + +++ LA S+ ++ AF E + Sbjct: 73 QYA---KLPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSMETWIETWAFSETI 129 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF- 185 HS ++ +I +L +D F+ +I ++ +Y TL T QE Sbjct: 130 HSRSYTHIQRNLHIDPSVQFDQILRNEAIMKRSASMTRYYDTLIDECHKLKTIMMLQEQV 189 Query: 186 ---------------------------LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 L E + FY F+ + KM Sbjct: 190 SGYKPNDPAVVYYNEQYAKQATKCKEALYLCMHAVNALEAIRFYVSFSFTFNFAEQGKME 249 Query: 219 GIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIA 274 G A+ + I RDE+LH I Q+ ++P + + ++++ + E E Sbjct: 250 GNAKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMVEISRRLKKEATAIFLEVYEQEKE 309 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 +A G V ++ S Y++ + ++R +GL+ F NP+PWM++ + Sbjct: 310 WAEHLFSVGDVEGVSLKSTIAYIEHLTDQRMRAVGLDSPFTPIPNPYPWMNKWL 363 >gi|45478633|ref|NP_995489.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|52788092|ref|YP_093920.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis] gi|145597234|ref|YP_001154698.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Pestoides F] gi|162417832|ref|YP_001604568.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis Angola] gi|229896974|ref|ZP_04512133.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit [Yersinia pestis Pestoides A] gi|45357286|gb|AAS58680.1| putative ribonucleoside-diphosphate reductase beta subunit [Yersinia pestis biovar Microtus str. 91001] gi|52538021|emb|CAG27446.1| putative ribonucleoside-diphosphate reductase beta subunit [Yersinia pestis] gi|145213002|gb|ABP42407.1| ribonucleoside-diphosphate reductase class Ia beta subunit [Yersinia pestis Pestoides F] gi|162350804|gb|ABX84753.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis Angola] gi|229700010|gb|EEO88050.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit [Yersinia pestis Pestoides A] Length = 380 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 75/349 (21%), Positives = 131/349 (37%), Gaps = 38/349 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 AN+ P+ G+ VNV AR D KY + + W P EV + Sbjct: 10 ANDATKEPMFLGQS-VNV-------ARYDQQ-----KYRDFEKLIEKQLSFFWRPEEVDI 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + + L + ER + NL + +S+ + + +S PE ++ + Sbjct: 57 TTDRIDFNT--KLQEHERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPELETWVETWS 114 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-------- 173 F E +HS ++ +II + D +F+ I ++A L + Sbjct: 115 FSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIISRAVSISSEYDRLYEMTCARQHLGE 174 Query: 174 ---------FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 G Q L V E + FY FA + G + G + Sbjct: 175 DEFERLYVSEFDGKPYPLQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKLLEGNTKIM 234 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETM 280 ++I RDE+LH +I ++ L K E + + + E+ +A Sbjct: 235 RFIARDEALHCEGTERMIRFMRTGREGLMWKMIAAEEESFIYQTMMDVAGQEMRWADYLF 294 Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVI 327 G +GLNA + Y+++ N ++GL PLF ++P WM++ + Sbjct: 295 KDGSMIGLNADILKSYVKYRTNLAMRRLGLRPLFPEIKDDPLVWMNKWL 343 >gi|328957625|ref|YP_004375011.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] gi|328673949|gb|AEB29995.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] Length = 320 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 62/318 (19%), Positives = 121/318 (38%), Gaps = 28/318 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK + W T +P+ +DL W L +E+ M+ + G Sbjct: 9 NWNNIEDMIDKLTWEKLVE---QFWTDTRIPLSNDLDDWA---RLPKNEKDMVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L + + V ++ + + F E++H+ ++ I ++L L+ E+F Sbjct: 63 TLLDTLQSQDGVQSLKQSIRTQHEEAVYNNIQFMESMHAKSYSAIFSTLNSKLEIDEIFQ 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA+ + V+ E FY+GF Sbjct: 123 WTNTDELLQLKASTINDIYHNGTDLQRKV---------------ASVMLESFLFYSGFFA 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + + P +E + + +L + Sbjct: 168 PLHYLGNNKLPNVAEIIKLILRDESVHGTYIGYKFQIAFNQLPDDEKEEIKNWTYELLFK 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325 E+ YA + +G + ++++ AN+ +G +PLF T N M+ Sbjct: 228 LYQNEVKYAEYLYDE--IGWT-ERVKVFLRYNANKALQNLGFDPLFPDTANDVDPVIMNG 284 Query: 326 VIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 285 ISTGTSNHDFFSQVGNGY 302 >gi|157311531|ref|YP_001469574.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage Phi1] gi|149380735|gb|ABR24740.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage Phi1] Length = 386 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 61/329 (18%), Positives = 119/329 (36%), Gaps = 35/329 (10%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P E+ + D + + D E+ NL + +S+ Sbjct: 31 RHQVFEELIEKQLSFFWRPEEISLATDRIQY---LNMGDVEKRFFTENLKYQTLLDSIQG 87 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A +S+P +L F E +HS ++ +I+ + +D F+ + P+I Sbjct: 88 RAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMK 147 Query: 158 KANWALQYTQTL---------------------------SSPSFTTGTKDADQEFLQDLF 190 +A QY + + F TK + Sbjct: 148 RAESIGQYYDDVLYWIRKYENAKEDLRYWEERDDHTALDDARRFFEDTKRDLMASIYLCA 207 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--- 247 E + FY FA S + G A+ ++I RDE LHL +I Q + Sbjct: 208 HCVNALEAIRFYVSFACTFSFAERGLLEGNAKIMKFIARDEQLHLKGTQYIIRQWQTGAD 267 Query: 248 -ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCH 305 + +E + ++ + + E + G + L+ + Y++++A+ R Sbjct: 268 GDEWKQIAEELEGEATKIFLDVVEQEKEWVDHLFAMGAIPNLSPEILKTYVEYLADSRMR 327 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 GL+ F +P PWM + ++ + +N Sbjct: 328 AAGLKSPFSVRRHPLPWMRKWLNSDEVQN 356 >gi|327198722|emb|CCA61423.1| unnamed protein product [Diadromus pulchellus ascovirus 4a] Length = 395 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 75/379 (19%), Positives = 138/379 (36%), Gaps = 67/379 (17%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y + K+ +HW+P EVPM DD+ W N L D+++ + FF Sbjct: 7 RSYYKPFQYEQFYNKWKVHERSHWLPAEVPMHDDVHDWN--NRLDDNQKKFLTNIFRFFT 64 Query: 91 SSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 + VA + PE ++ A EAVH + ++I +LG+ E + + Sbjct: 65 QGDVDVAGAYCSEYLPNFCETPEIAMFMCSVAAREAVHIDAYSHLIETLGMPES-TYREF 123 Query: 150 REVPSITAKANWALQY----TQTLSSPSFTTG---------------------------- 177 E + K ++ ++ +L SF T Sbjct: 124 LEYHEMKEKQDYIKKFQHGNYGSLKDDSFMTKLGVCISMLVLVVLFALGVDVLVWFSSLL 183 Query: 178 --------------TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + + + +F EGM ++ F +LS M G+ + Sbjct: 184 PAVMLASSHIHRYRQRLIKEHIAAGIALFSGFTEGMQLFSSFTMLLSFPMNGLMKGMGQI 243 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPH-----------LWTKEFQQKSRTMLHEATLLE 272 + + DE+ H + I + EN + + + + E LE Sbjct: 244 VSWSIVDETQHTDGMITLFKIFVDENTECRCNPILGCNCIRPDVLRDTVKKIALEMVRLE 303 Query: 273 IAYA-----HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEV 326 + + F+ ++ +QY++FIAN+R + + F ++NP P + Sbjct: 304 DEFINLAYDEYADDEVFMNISKTKLKQYIRFIANKRMEAMRYDHPFPEASDNPLPEFEIM 363 Query: 327 IDLKKEKNFFETRVTEYQQ 345 I+ NFFE R T+Y + Sbjct: 364 INAPINTNFFENRSTDYAR 382 >gi|306833073|ref|ZP_07466204.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus bovis ATCC 700338] gi|304424782|gb|EFM27917.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus bovis ATCC 700338] Length = 320 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 67/330 (20%), Positives = 126/330 (38%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ +E+ ++ + G Sbjct: 10 NWNEIEDIIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + + V AI + P L F E+VH+ ++ I ++L + +F Sbjct: 64 TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEAIFE 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + G + V E FY+GF Sbjct: 124 WTNSNDYLQKKA--------KIINDIYENGNALQKK-------VASTFLETFLFYSGFFT 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E F++ +L++ Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDNFREWMYDLLYQ 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF T NP M+ Sbjct: 229 LYENEENYTKSLYDG--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G+ ++ D Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGSVEAMQDD 314 >gi|149369595|ref|ZP_01889447.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified eubacterium SCB49] gi|149357022|gb|EDM45577.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified eubacterium SCB49] Length = 424 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 66/337 (19%), Positives = 145/337 (43%), Gaps = 22/337 (6%) Query: 21 DKRMLNARSDVNQ----LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +KR ++D+ + L P +Y +E + +++W+ TE D+ +K++ L + Sbjct: 93 NKRTQERKTDIFERRISLKPYEYPQLYEYVPAIRHSYWIHTEFNFTSDIQDFKTR--LNE 150 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 ER IK + + E V + ++ + PE A E H+ + +++ Sbjct: 151 VERSAIKNTMLAISQIEVAV-KSFWGDLHLRMPKPEIGAVGSTFAESEVRHADAYSHLLE 209 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 LGL++ F ++ P I + + + D ++E+ + + +F + Sbjct: 210 ILGLNKE--FKALKKKPVIMKRVQYL--------ESALRNSKSDDNEEYAEAVLLFSLFI 259 Query: 197 EGMWFYTGFAQILSLGRANKM-VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 E + ++ F I++ + M G++ + ++E +H +FGID+I +K E+P +T Sbjct: 260 EHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEEQIHGDFGIDLILILKDEHPEWFTP 319 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC-EQYMQFIANRRCHQIGLEPLFK 314 E+ + + + +A E+ +G + + ++++ N+ IG+E +F Sbjct: 320 EYHENIKRLCLDAYEAEVDLVDWIFEEGELDFLPKTVINEFLKNRFNKSLESIGVEKVFD 379 Query: 315 YTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348 E W + I K +FF R Y + + Sbjct: 380 VDEALVIQTEWFDDEIIGTKHGDFFVKRSVNYSKRTQ 416 >gi|288904913|ref|YP_003430135.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus gallolyticus UCN34] gi|306830970|ref|ZP_07464132.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288731639|emb|CBI13196.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus gallolyticus UCN34] gi|304426993|gb|EFM30103.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 320 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 67/330 (20%), Positives = 126/330 (38%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ +E+ ++ + G Sbjct: 10 NWNEIEDIIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + + V AI + P L F E+VH+ ++ I ++L + +F Sbjct: 64 TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEAIFE 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + G + V E FY+GF Sbjct: 124 WTNSNDYLQKKA--------KIINDIYENGDALQKK-------VASTFLETFLFYSGFFT 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E F++ +L++ Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDNFREWMYDLLYQ 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y VG ++++ AN+ +G +PLF T NP M+ Sbjct: 229 LYENEENYTKSLYDG--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G+ ++ D Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGSVEAMQDD 314 >gi|238695114|ref|YP_002922308.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE] gi|220029250|gb|ACL78185.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE] Length = 388 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 120/329 (36%), Gaps = 35/329 (10%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P E+ + D + + D E+ NL + +S+ Sbjct: 33 RHQVFEELIEKSLSFFWRPEEISLATDRIQY---LNMGDVEKRFFTENLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A +S+P +L F E +HS ++ +I+ + +D F+ + P+I Sbjct: 90 RAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMK 149 Query: 158 KANWALQYTQTL---------------------------SSPSFTTGTKDADQEFLQDLF 190 +A +Y + + F TK + Sbjct: 150 RAESIGKYYDDVLYWIRKYENAKEDLRYWEERDDQTALDDARRFFEDTKRDLMASIYLCA 209 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--- 247 E + FY FA S + G A+ ++I RDE LHL +I Q + Sbjct: 210 HCVNALEAIRFYVSFACTFSFAERGLLEGNAKIMKFIARDEQLHLKGTQYIIRQWQTGVD 269 Query: 248 -ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCH 305 + +E + ++ + + E + G + L+ + Y++++A+ R Sbjct: 270 GDEWKQIAEELEGEATKIFLDVVEQEKEWVDHLFAMGAIPNLSPEILKTYVEYLADSRMR 329 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 GL+ F +P PWM + ++ + +N Sbjct: 330 AAGLKSPFSVRRHPLPWMRKWLNSDEVQN 358 >gi|295397900|ref|ZP_06807962.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] gi|294973880|gb|EFG49645.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] Length = 323 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 120/318 (37%), Gaps = 28/318 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W++ L+ E+ MI + G Sbjct: 13 NWNDIEDMIDKLTWEKL---TEQFWLDTRIPLSNDLDTWRT---LSAREQDMIGKVFGGL 66 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++L + + + ++ + F E+VH+ ++ I ++L + ++F Sbjct: 67 TLLDTLQSEDGMESLKASIRTQHEEAVYNNIQFMESVHAKSYSSIFSTLNTPKEIDKIFA 126 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 RE I KAN Q + V E FY+GF Sbjct: 127 WTRENEFIQYKANRINGIYQNGTDLQRKV---------------ASVFLESFLFYSGFYA 171 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L K+ +AE + I+RDES+H + + ++ Q + ++L E Sbjct: 172 PLWYLGNGKLPNVAEIIKLILRDESVHGTYIGYKFQIAFNQLSKEEQEDMQNWAFSLLFE 231 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325 E Y+ +G + ++++ AN+ +G +PLF T + M+ Sbjct: 232 LYENEAKYSEYIYDD--LGWT-EDVKIFLRYNANKALQNLGFDPLFPDTADDVDPIVMNG 288 Query: 326 VIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 289 ISTGTSNHDFFSQVGNGY 306 >gi|313890786|ref|ZP_07824411.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313120887|gb|EFR44001.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 319 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 69/330 (20%), Positives = 127/330 (38%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+D E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + ++F Sbjct: 63 TLLDTMQSETGVEAIRADIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEDIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA A+ + LQ E FY+GF Sbjct: 123 WTNNNEFLQKKAKIINDIY--------------ANGDALQKKV-ASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E + F++ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELNEEEQESFREWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + VG ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEENYTKTLYDQ--VGWTDEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G+ ++ D Sbjct: 284 GISTGTSNHDFFSQVGNGYLLGSVEAMQDD 313 >gi|199598384|ref|ZP_03211803.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus HN001] gi|199590703|gb|EDY98790.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus HN001] Length = 326 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 67/330 (20%), Positives = 125/330 (37%), Gaps = 32/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + WEK W+ T +P+ +DL W+S L+ DE+ ++ G Sbjct: 9 NWNAIEDEVDKATWEKL---TEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++L + + + ++ +++ + L F E+VH+ ++ I ++L E+F+ Sbjct: 63 TLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFD 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KAN S+ V E FY+GF Sbjct: 123 WTNHNEHLQYKANKINDIYHNGSALQKKI---------------ASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P ++ Q +L++ Sbjct: 168 PLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPAAEQQQLQDWMYDLLYD 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y ++ K ++++ AN+ +G E F T NP M+ Sbjct: 228 LYENEEKYTNDLYAK--TKWT-DEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y+ G ++ D Sbjct: 284 GISTSTANHDFFSQVGNGYRLGQVEAMEDD 313 >gi|221316490|ref|ZP_03598295.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 347 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 74/336 (22%), Positives = 129/336 (38%), Gaps = 15/336 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +RM + S + + +E W+P EV M D W + + + E+ + Sbjct: 20 ERMFDDVSGILFWDDIINQVYYELIKEMREVFWIPDEVSMSKDKVQWAT--EMNEMEQEL 77 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 +G A +S+ +A Y ++ + + + A E +H+ ++ YI++S+ Sbjct: 78 FLNAIGILAVLDSIATYFDNVAAY-YIRDSAIKALMAFVAAMETIHNESYTYILSSVSS- 135 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 K N + L F ++ E V EG+ F Sbjct: 136 -----KAVSLDVFERPKKNEFMIRRNKLMMDLFDEFIQNPTPETFAKGLVAMSGLEGLCF 190 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 GF R KM G QYI RDE H F ++ I + P L T+EF + Sbjct: 191 VNGFTPFYHFNRNGKMFGTGTVIQYIQRDEMKHSYFQTILVRDILTQYPELNTEEFSEFV 250 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 E LE + E + K ++ ++Y+ + AN +GL+ +F +NP P Sbjct: 251 YDFFTELVQLEREF-CEDLYKNTPDIDIEEVKEYIGYRANLILDNLGLDQIFSAKKNPMP 309 Query: 322 WMSEV---IDLKKEKNFFETRVTEYQQGAEL--KWD 352 W++ +++FFE + Y + E WD Sbjct: 310 WITAFDPDNLNNTKRDFFEDKEVNYGKANEQKNDWD 345 >gi|33620698|ref|NP_891801.1| aerobic NDP reductase small subunit [Enterobacteria phage RB49] gi|33438568|gb|AAL15125.2| aerobic NDP reductase small subunit [Enterobacteria phage RB49] Length = 386 Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 119/329 (36%), Gaps = 35/329 (10%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P E+ + D + + D E+ NL + +S+ Sbjct: 31 RHQVFEELIEKQLSFFWRPEEISLATDRIQY---LNMGDVEKRFFTENLKYQTLLDSIQG 87 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A +S+P +L F E +HS ++ +I+ + +D F+ + P+I Sbjct: 88 RAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTHIMRNCFIDPASEFDQIIDNPAIMK 147 Query: 158 KANWALQYTQTL---------------------------SSPSFTTGTKDADQEFLQDLF 190 +A +Y + + F TK + Sbjct: 148 RAESIGKYYDDVLYWIRKYENAKEDLRYWEERDDQTALDDARRFFEDTKRDLMASIYLCA 207 Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--- 247 E + FY FA S + G A+ ++I RDE LHL +I Q + Sbjct: 208 HCVNALEAIRFYVSFACTFSFAERGLLEGNAKIMKFIARDEQLHLKGTQYIIRQWQTGVD 267 Query: 248 -ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCH 305 + +E + ++ + + E + G + L+ + Y++++A+ R Sbjct: 268 GDEWKQIAEELEGEATKIFLDVVEQEKEWVDHLFAMGAIPNLSPEILKTYVEYLADSRMR 327 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 GL+ F +P PWM + ++ + +N Sbjct: 328 AAGLKSPFSVRRHPLPWMRKWLNSDEVQN 356 >gi|323650974|ref|YP_004243617.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. natto] gi|323461614|dbj|BAJ77030.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. natto] Length = 347 Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats. Identities = 74/334 (22%), Positives = 129/334 (38%), Gaps = 13/334 (3%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 +RM + S + + +E W+P EV M D W + + + E+ + Sbjct: 20 ERMFDDVSGILFWDDIINQVYYELIKEMREVFWIPDEVSMSKDKVQWAT--EMNEMEQEL 77 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 +G A +S+ +A Y ++ + + + A E +H+ ++ YI++S+ Sbjct: 78 FLNAIGILAVLDSIATYFDNVAAY-YIRDSAIKALMAFVAAMETIHNESYTYILSSVSS- 135 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 K N + L F ++ E V EG+ F Sbjct: 136 -----KAVSLDVFERPKKNEFMIRRNKLMMDLFDEFIQNPTPETFAKGLVAMSGLEGLCF 190 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 GF R KM G QYI RDE H F ++ I + P L T+EF + Sbjct: 191 VNGFTPFYHFNRNGKMFGTGTVIQYIQRDEMKHSYFQTILVRDILTQYPELNTEEFSEFV 250 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 E LE + E + K ++ ++Y+ + AN +GL+ +F +NP P Sbjct: 251 YDFFTELVQLEREF-CEDLYKNTPDIDIEEVKEYIGYRANLILDNLGLDQIFAAKKNPMP 309 Query: 322 WMSEV---IDLKKEKNFFETRVTEYQQGAELKWD 352 W++ +++FFE + Y + E K D Sbjct: 310 WITAFDPDNLNNTKRDFFEDKEVNYGKANEQKND 343 >gi|1710396|sp|P50644|RIR2_EHV4 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|515833|emb|CAA53101.1| ribonucleoside-diphosphate reductase [Equid herpesvirus 4] Length = 320 Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats. Identities = 66/305 (21%), Positives = 119/305 (39%), Gaps = 18/305 (5%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 L + N W+ T++P+ DDL L ER + F ++++ LV N Sbjct: 27 PDIEHLRLLSVANRWLDTDLPISDDLKD---VAKLAPAEREFYRFLFAFLSAADDLVNLN 83 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 + + + + Y + Q E HS + I L ++ Y Sbjct: 84 L-GDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDATARARYVASVVKDVAI 142 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 + + + Q K + + + + ++ ++ EG++F + FA I L N V Sbjct: 143 DLKVSWLQA----------KVRECKSVAEKYILMILIEGVFFASSFASIAYLRTHNLFVV 192 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + I RDE++H N + N + K + + EA +E + Sbjct: 193 TCQSNDLISRDEAIHTNASCCIYNNYLGG----FEKPAPTRIYALFSEAVNIECEFLLSH 248 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 PK L+ + Y+++ A+R +IGL PLF + P + + ++K NFFE R Sbjct: 249 APKSSHLLDIEAIICYVRYSADRLLGEIGLSPLFNAPKPPPSFPLAFMTVEKHTNFFERR 308 Query: 340 VTEYQ 344 T Y Sbjct: 309 STAYS 313 >gi|9629745|ref|NP_045237.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 4] gi|2605963|gb|AAC59535.1| 20 [Equid herpesvirus 4] Length = 320 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 66/305 (21%), Positives = 119/305 (39%), Gaps = 18/305 (5%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 L + N W+ T++P+ DDL L ER + F ++++ LV N Sbjct: 27 PDIEHLRLLSVANRWLDTDLPISDDLKD---VAKLAPAEREFYRFLFAFLSAADDLVNLN 83 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 + + + + Y + Q E HS + I L ++ Y Sbjct: 84 L-GDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDATARARYVASVVKDVAI 142 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 + + + Q K + + + + ++ ++ EG++F + FA I L N V Sbjct: 143 DLKVSWLQA----------KVRECKSVAEKYILMILIEGVFFASSFASIAYLRTHNLFVV 192 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + I RDE++H N + N + K + + EA +E + Sbjct: 193 TCQSNDLISRDEAIHTNASCCIYNNYLGG----FEKPAPTRIYALFSEAVNIECEFLLSH 248 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 PK L+ + Y+++ A+R +IGL PLF + P + + ++K NFFE R Sbjct: 249 APKSTHLLDIEAIICYVRYSADRLLGEIGLSPLFNAPKPPPSFPLAFMTVEKHTNFFERR 308 Query: 340 VTEYQ 344 T Y Sbjct: 309 STAYS 313 >gi|254796877|ref|YP_003081714.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia risticii str. Illinois] gi|254590113|gb|ACT69475.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia risticii str. Illinois] Length = 286 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 72/294 (24%), Positives = 127/294 (43%), Gaps = 18/294 (6%) Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 M DD+ W K T E+ ++ + FF ++ V + + PE L Sbjct: 1 MADDVQDWHHKICST--EKNLLTQIFRFFTQADVEVHDCYMRHYAGVFKPPEVCMMLTAF 58 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 A E +H + +++ ++G+ E E + + + + K + D Sbjct: 59 ANMETIHIAAYAHLLDTVGMPETE-YLAFTKYRQMKEKCEYL------------KAFKMD 105 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 + E + L V+ EG+ + FA +L+ R NKM G+ + Y +RDE+LH N Sbjct: 106 SPTEIAKTLAVYGAFTEGLQLFASFAILLNFPRFNKMKGMGQIIAYSVRDETLHSNSITK 165 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFI 299 + +EN K + + R + E A+ G V L A ++Y+++I Sbjct: 166 LFRTFLLENDIDKLK-LEAEIREICDAMVHHEDAFIDLAFEMGDVEGLKASEVKEYIRYI 224 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352 AN R Q+G +++ NP W+ V++ + NFFE + TEY + A + WD Sbjct: 225 ANLRLKQLGFSEIYEQKVNPLLWLEAVLNTVEHTNFFENKATEYSKAATKGTWD 278 >gi|269864946|ref|XP_002651751.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|269865852|ref|XP_002652068.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|269866233|ref|XP_002652201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220062966|gb|EED41855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063214|gb|EED41988.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063944|gb|EED42305.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 226 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 28/235 (11%) Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSS 171 + Q E +HS + +I +L D+ E FN +PSI KA WA ++ Sbjct: 1 MFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWI----- 55 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 A V + EG++F FA I L + M G+ + I RDE Sbjct: 56 ---------ASDTSFDTRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDE 106 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 LH +F + I + ++ EA +E + E++P +G+N Sbjct: 107 GLHTDFACLLHKYINNKCT---------VIEDIVREAVAIEQEFLSESLPVSLIGMNCKL 157 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 QY++F+A+R +G + ++ + NPF +M E I L+ + NFFE R YQ+G Sbjct: 158 MCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 210 >gi|81428551|ref|YP_395551.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus sakei subsp. sakei 23K] gi|78610193|emb|CAI55242.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus sakei subsp. sakei 23K] Length = 318 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 119/319 (37%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + NQ+ WEK W+ T +P+ +DL W+S L D+E+ ++ G Sbjct: 9 NWNQVEDQIDKATWEKL---TEQFWLDTRIPLSNDLDDWRS---LPDNEKWIVGHVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++L + + + ++ ++ P L F E+VH+ ++ I ++L E+F+ Sbjct: 63 TLLDTLQSQDGMASLKANIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTPNEIDEIFD 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KAN Q S V E FY+GF Sbjct: 123 WTNTNEYLQYKANKINSIYQNGSPLQQKI---------------ASVFLETFLFYSGFYT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E +E Q +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELAKAEQEELQNWMYDLLYD 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y HE G Y+++ AN+ +G LF T NP ++ Sbjct: 228 LYANEEKYTHEVYDG--TGWT-EEVLTYLRYNANKALMNLGQGALFPDTAEDVNPVV-LN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GMSTSTANHDFFSQVGNGY 302 >gi|195977892|ref|YP_002123136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974597|gb|ACG62123.1| ribonucleotide reductase of class Ib (aerobic) beta subunit NrdF [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 319 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 65/317 (20%), Positives = 121/317 (38%), Gaps = 26/317 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAVEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ + + V AI + + P L F E+VH+ ++ I ++L + Sbjct: 63 TLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKE------ 116 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E N LQ + + + G+ + V E FY+GF L Sbjct: 117 IEDIFEWTNNNLFLQNKAKIINDIYKNGSALQKK-------VASTYLETFLFYSGFFTPL 169 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NK+ +AE + I+RDES+H + E + + +L++ Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSDSEQESLRDWMYDLLYQLY 229 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 E Y + VG ++++ AN+ +G +PLF T NP M+ + Sbjct: 230 ENEEQYTKTLYDE--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MNGI 285 Query: 327 IDLKKEKNFFETRVTEY 343 +FF Y Sbjct: 286 STGTSNHDFFSQVGNGY 302 >gi|310722637|ref|YP_003969460.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5] gi|306021480|gb|ADM80014.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5] Length = 376 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 124/316 (39%), Gaps = 25/316 (7%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +K+ + + W P EV + D+ + + LT+ E+ + +NL + + +S+ Sbjct: 31 VKHPVIDKLTEKQLSFFWRPEEVDLSKDMIDF---SRLTEAEQYVFTQNLKYQSLLDSVQ 87 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 L +S+ ++ +F E +HS ++ +I+ +L ++ E+F+ I Sbjct: 88 GRAPNLTFLPMVSDIALETWITTWSFSETIHSRSYTHIMRNLYVNPTEVFDRIMLDEKIM 147 Query: 157 AKANWALQYTQTLSSPSFT--------------TGTKDADQEFLQDLFVFYVVFEGMWFY 202 +A QY L T +E L E + FY Sbjct: 148 KRATAVTQYYDDLIREKRTYDMLCCQVFPAGLQVQQLTKVKEALYLAKHAVNALEAIRFY 207 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHLWT--KEFQ 258 FA S M G A+ + I RDE LHL I + ++P + K + Sbjct: 208 VSFACTFSFAERGLMEGNAKIMKLIARDEQLHLKGTQYQIRTWQNGEDDPEMVDIAKRLE 267 Query: 259 QKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGL---EPLFK 314 K+ + +A E +A + + + L+ S Y+ ++ R GL E L Sbjct: 268 SKAVQIFLDAAEQEKEWARDLLSRVSIPSLSLQSMLDYIDYLTASRMQSAGLPIPEELNV 327 Query: 315 YTENPFPWMSEVIDLK 330 +++P PW+ + ++ + Sbjct: 328 PSKHPLPWIRKWLNSE 343 >gi|225868773|ref|YP_002744721.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. zooepidemicus] gi|225702049|emb|CAW99658.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. zooepidemicus] Length = 319 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 65/317 (20%), Positives = 121/317 (38%), Gaps = 26/317 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSAVEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ + + V AI + + P L F E+VH+ ++ I ++L + Sbjct: 63 TLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKE------ 116 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E N LQ + + + G+ + V E FY+GF L Sbjct: 117 IEDIFEWTNNNLFLQNKAKIINDIYENGSALQKK-------VASTYLETFLFYSGFFTPL 169 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NK+ +AE + I+RDES+H + E + + +L++ Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSESEQESLRDWMYDLLYQLY 229 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 E Y + VG ++++ AN+ +G +PLF T NP M+ + Sbjct: 230 ENEEQYTKTLYDE--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MNGI 285 Query: 327 IDLKKEKNFFETRVTEY 343 +FF Y Sbjct: 286 STGTSNHDFFSQVGNGY 302 >gi|12084869|ref|NP_073334.1| ribonucleotide reductase subunit 2 [Meleagrid herpesvirus 1] gi|11095873|gb|AAG30080.1|AF282130_43 UL40 ribonucleotide reductase small subunit [Meleagrid herpesvirus 1] gi|12025152|gb|AAG45778.1|AF291866_45 UL40 ribonucleotide reductase, small subunit [Meleagrid herpesvirus 1] Length = 355 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 64/309 (20%), Positives = 117/309 (37%), Gaps = 27/309 (8%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W TE + DDL L++DE+ + F ++++ LV N Sbjct: 63 PDIGNLRSLSIMNRWTETEFVIADDLED---VGKLSEDEKNFYRFLFTFLSAADDLVNLN 119 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSI 155 I ++ + + Y Q EAVHS + I L ++ Y P+I Sbjct: 120 I-DSLLSLFTQKDIHHYYFEQECIEAVHSRAYSIIQLMLFSNDQAARQEYVTSTLRSPAI 178 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 +K W + + A+ + + ++ ++ EG++F FA I L N Sbjct: 179 LSKLEWLER--------------RVAECTSIAEKYILMILIEGIFFTASFAAIAYLRVNN 224 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 V + I RDE++H+ + K + T+ EA LE + Sbjct: 225 LFVVTCQINNLISRDEAIHVEASCCIFKNYLAGP-----KPTTARIHTLFKEAVRLECEF 279 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 P+ +N + Y+++ A+R + + P++ + P + ++ NF Sbjct: 280 LRTAAPRTSNIINIDAICSYVRYSADRLLRALDILPIYDEPKPPADFPLVLMSAASNTNF 339 Query: 336 FETRVTEYQ 344 FE R T Y Sbjct: 340 FERRNTAYS 348 >gi|312262463|gb|ADQ52758.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage PX29] Length = 376 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 61/316 (19%), Positives = 121/316 (38%), Gaps = 25/316 (7%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +K+ + + + W P EV + D + + L++ E+ + +NL + + +S+ Sbjct: 31 VKHPAIDKLTERSLSFFWRPEEVDLSKDAIDY---SRLSEQEQYVFTQNLKYQSLLDSVQ 87 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 L +S+ ++ +F E +HS ++ +I+ +L +D +F+ I Sbjct: 88 GRAPNLVFLPIVSDVALETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDAKIM 147 Query: 157 AKANWALQYTQTLS--------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 A+A QY L SP +E + E M FY Sbjct: 148 ARATSVTQYYDDLISELKTYDLLRQSVFSPELRVAQLTNVKEAMYLAMHAVNALEAMRFY 207 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQ 258 FA S G M G A+ + I RDE LHL +I + + + + Sbjct: 208 VSFACTFSFGERGLMEGNAKIMRLIARDEQLHLKGTQYLIRAWQNGDDDSEMVDIARRLE 267 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316 K+ ++ E E +A + + + L+ Y+ ++ R +GL + Sbjct: 268 SKAVSIFIEVAEQEKEWAKDLLGNVSIPGLSLAEMIDYIDYLTGSRMRSVGLPVPDEVNV 327 Query: 317 --ENPFPWMSEVIDLK 330 ++P PW+ + ++ Sbjct: 328 PIKHPLPWIRKWLNSD 343 >gi|225870271|ref|YP_002746218.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. equi 4047] gi|225699675|emb|CAW93380.1| putative ribonucleoside-diphosphate reductase beta chain [Streptococcus equi subsp. equi 4047] Length = 319 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 67/328 (20%), Positives = 124/328 (37%), Gaps = 28/328 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+ E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---RLSAVEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ + + V AI + + P L F E+VH+ ++ I ++L + Sbjct: 63 TLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKE------ 116 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E N LQ + + + G+ + V E FY+GF L Sbjct: 117 IEDIFEWTNNNVFLQNKAKIINDIYENGSALQKK-------VASTYLETFLFYSGFFTPL 169 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NK+ +AE + I+RDES+H + E + + +L++ Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSESEQESLRDWMYDLLYQLY 229 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 E Y + VG ++++ AN+ +G +PLF T NP M+ + Sbjct: 230 ENEEQYTKTLYDE--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MNGI 285 Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352 +FF Y G + D Sbjct: 286 STGTSNHDFFSQVGNGYLLGTVEAMTDD 313 >gi|329117318|ref|ZP_08246035.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parauberis NCFD 2020] gi|326907723|gb|EGE54637.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus parauberis NCFD 2020] Length = 321 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 66/319 (20%), Positives = 123/319 (38%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLPAKEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ + V AI + P L F E+VH+ ++ I ++L + E+F+ Sbjct: 63 TLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFD 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + G + V E FY+GF Sbjct: 123 WTNSNEFLQNKA--------KIINDIYENGDALQKK-------VASTYLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E ++F++ +L++ Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEKQEDFKEWMYDLLYQ 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y + VG ++++ AN+ +G +PLF T NP M+ Sbjct: 228 LYENEENYTKSLYDQ--VGWTEEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTGTSNHDFFSQVGNGY 302 >gi|261885428|ref|ZP_06009467.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 282 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 125/293 (42%), Gaps = 20/293 (6%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLP-LKYGWAWEKYLSACNNHW-----MPTEVPM 61 I ++D+++ P KY WA L + W P EV Sbjct: 4 KKIYNPSSNETLNDRKVFGGNPHGILTSPKAKYTWA----LKLLGSLWKQIPGFPKEVDT 59 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 DD+ + LT ++ M S +S NN+ I +++ PE L RQA Sbjct: 60 TDDVRDYAC--NLTTAKKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAILARQA 117 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 +EEA HS ++ ++ ++ + ++ M + + K ++ + L+ + Sbjct: 118 YEEANHSKSYAVMVEAICDNTDLIYEMEKYDDVLRKKNDYISSVYEELAG--------EV 169 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 E L V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++ Sbjct: 170 TDEKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNM 229 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 IN ++ E P L+T E + K M +A LEI + +G E+ Sbjct: 230 INSVRKERPDLFTSEVEAKIYEMFKKAGDLEIEWGKYITGNQIMGFTDDIIEE 282 >gi|125745092|ref|YP_001033969.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 2] gi|327488446|sp|Q77MS0|RIR2_GAHVM RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|7673151|gb|AAF66775.1|AF147806_39 ribonucleotide reductase small subunit [Gallid herpesvirus 2] gi|10180745|gb|AAG14233.1|AF243438_48 UL40 ribonucleotide reductase small subunit-like protein [Gallid herpesvirus 2] gi|104304005|gb|ABF72280.1| HSV-1 UL40-like protein [Gallid herpesvirus 2] gi|148806369|gb|ABR13125.1| UL40 [Gallid herpesvirus 2] gi|194346388|gb|ACF49570.1| UL40 [synthetic construct] gi|194750382|gb|ACF94859.1| UL40 [Gallid herpesvirus 2] gi|237626230|gb|ACR02753.1| UL40 [synthetic construct] gi|237626404|gb|ACR02926.1| UL40 [synthetic construct] Length = 343 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 62/309 (20%), Positives = 117/309 (37%), Gaps = 27/309 (8%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W TE + DDL + LT++ER + F ++++ LV N Sbjct: 51 PDIGHLRALSIMNRWTETEFVISDDLRD---VSMLTEEERYFYRFLFTFLSAADDLVNLN 107 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155 I + S + Y Q EAVHS + + + L E P+I Sbjct: 108 I-DNLLGLFSQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAI 166 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 +K +W + + + + ++ ++ EG++F FA I L N Sbjct: 167 QSKLDWL--------------NKRVIECSSIAEKYILMILIEGIFFSASFAAIAYLRINN 212 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 V + I RDE++H+ + + K + + + EA +E A+ Sbjct: 213 LFVVTCQINNLISRDEAIHVEASCCIFKNYL-----MGPKPSIGRVQELFKEAVQIECAF 267 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 P+ L+ + Y+++ A+R ++ + P++ + + ++ NF Sbjct: 268 LRTAAPRNSQLLDVEAICSYVRYSADRLLKELDMPPIYNEPKPTADFPLALMTASNNTNF 327 Query: 336 FETRVTEYQ 344 FE R T Y Sbjct: 328 FERRNTAYS 336 >gi|261868068|ref|YP_003255990.1| ribonucleoside-diphosphate reductase subunit beta [Aggregatibacter actinomycetemcomitans D11S-1] gi|293389919|ref|ZP_06634253.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|261413400|gb|ACX82771.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D11S-1] gi|290950453|gb|EFE00572.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 329 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 68/322 (21%), Positives = 136/322 (42%), Gaps = 19/322 (5%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 + ++ P +Y E + +++W+ TE D+ +++ ++D ER +I + + Sbjct: 11 TPRFEIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDFRT--HISDVERAVITKTMLA 68 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 + E V +Y + PE E H + +++ LGL+ E+F Sbjct: 69 ISQIEVSV-KRFWGNLYNYFPKPEIEDVGGSFLESEIRHKDAYSFLLEKLGLN--EMFRN 125 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 R+ +I A+ + +F + Q+F+ L +F + E + ++ F + Sbjct: 126 VRQYKAIMARIEYM---------EAFMRKKDVSQQDFVLSLVMFSLFVEHISLFSQFVIM 176 Query: 209 LSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 +S + N GI+ + ++E +H FGI + + ++ E P L+T EF + + + + Sbjct: 177 MSFNKHKNLFKGISNAVEATSKEEEIHGRFGISLYHLLREEQPELFTDEFYAELKELAEQ 236 Query: 268 ATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WM 323 A E A G + + + E Y+ N +GLEP++ + W Sbjct: 237 AFNAEKAILDWIFEDGELSFLSKATVENYIANRYNNSLVTLGLEPIYNISPAQLKETEWF 296 Query: 324 SEVIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 297 DIEILSTKETDFFNKRSTDYSK 318 >gi|166367085|ref|YP_001659358.1| ribonucleoside-diphosphate reductase beta chain [Microcystis aeruginosa NIES-843] gi|166089458|dbj|BAG04166.1| ribonucleoside-diphosphate reductase beta chain [Microcystis aeruginosa NIES-843] Length = 283 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 75/293 (25%), Positives = 125/293 (42%), Gaps = 24/293 (8%) Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 LTD+ER L + +S+ NI + ++ PE + Q +EA+H+ Sbjct: 3 EYGHLTDEERYAYDGILSYLTFLDSVQTCNI-PHLKGSVTAPEISLCMAEQISQEAMHNQ 61 Query: 130 TFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 ++QY+I ++ E GE+++ +R + + + Q T E Sbjct: 62 SYQYLIETIIPSERRGEVYDFWRTDKVLKDRCQFIASLYQQYIDKQTT--------ESYF 113 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 V + E ++FY GF +L M G A+ ++ I RDE H+ +I + Sbjct: 114 IALVADYLLESLYFYNGFIFFYNLASRQLMSGSADVFKMINRDELSHVRLYQKLIPEAMA 173 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 H ++ M A E + + + +G+ S EQY +++AN R I Sbjct: 174 TFSHSV-----EQIYEMFDTAVKHECRWTNHIVGNDILGITEYSTEQYTKYLANIRLKAI 228 Query: 308 GLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 GLEPL+ KY ++P+ + D KK + NFFE VT Y + L WD Sbjct: 229 GLEPLYREEKYNKSPYNHLERFSDTKKEGHTKANFFEATVTSYVMSSGLTGWD 281 >gi|293411957|ref|ZP_06654682.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|309797907|ref|ZP_07692288.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|220980068|emb|CAP72260.1| Ribonucleoside-diphosphate reductase subunit beta [Escherichia coli LF82] gi|291469512|gb|EFF12001.1| ribonucleoside-diphosphate reductase [Escherichia coli B354] gi|308118515|gb|EFO55777.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia coli MS 145-7] gi|323934216|gb|EGB30640.1| ribonucleotide reductase [Escherichia coli E1520] Length = 380 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 76/352 (21%), Positives = 134/352 (38%), Gaps = 38/352 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 AN+ P+ G+ VNV AR D KY + + W P EV + Sbjct: 10 ANDATKEPMFLGQS-VNV-------ARYDQQ-----KYRDFEKLIERQLSFFWRPEEVDI 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + + L D ER + NL + +S+ + + +S PE ++ + Sbjct: 57 SSDRIDFNT--KLRDHERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPELETWVETWS 114 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS---FTTGT 178 F E +HS ++ +II + D +F+ I +A L + + G Sbjct: 115 FSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIINRAISISAEYDRLYGMTCERQSLGE 174 Query: 179 KDADQ--------------EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 K+ ++ L V E + FY FA + G + G + Sbjct: 175 KEFERLYVNEYGWEPYPLHRQLFRTLVSINALEAIRFYVSFACTFAFGERKLLEGNTKIM 234 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEF----QQKSRTMLHEATLLEIAYAHETM 280 ++I RDE+LH +I ++ L KE + + E+ +A Sbjct: 235 RFIARDEALHCEGTERMIRFMRTGREGLLWKEIAADEENVIYDTMKSVAEQEMNWADYLF 294 Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330 G +GLNA + Y+++ N +++GL+ LF T +P WM++ + Sbjct: 295 KDGSMIGLNADILKTYVKYRTNLAMNRLGLKALFPEVTTDPLVWMNKWLLTD 346 >gi|255535950|ref|YP_003096321.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Flavobacteriaceae bacterium 3519-10] gi|255342146|gb|ACU08259.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Flavobacteriaceae bacterium 3519-10] Length = 324 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 128/316 (40%), Gaps = 18/316 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y + + + W+ +EV D+ ++S L E+ +K L A E Sbjct: 11 KPFEYPEIMQFVEAINKSFWVHSEVDFTADVQDFQS--QLEPHEKNAVKNALLAIAQIEV 68 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V +Y HL PE A E HS + ++ LG ++ FN E+P+ Sbjct: 69 SV-KTFWGNLYNHLPKPELNGLGSTFAECEFRHSEAYSRLLEVLGYNDA--FNHVVEIPA 125 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR- 213 I + ++ S +E++ L +F ++ E + ++ FA ILS R Sbjct: 126 IKKRIDFL--------SNVLKHANSTTPKEYVSSLLLFSILIENVSLFSQFAIILSFTRF 177 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 M ++ + DE +H N GI +IN+I+ E P L T + T++ + LE Sbjct: 178 KGYMKNVSNIIAWTSVDEQIHANAGIYLINKIREEQPDLLTDSDIEDIYTLVDHSIELEA 237 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSEVIDL 329 G ++ + +M++ + +IG++ + + + P W E + Sbjct: 238 EILDWIFEMGEIDNVSKENLLNFMKYRVDDSLKKIGMQTRYNVSGDEYRPMVWFEEEVFA 297 Query: 330 KKEKNFFETRVTEYQQ 345 +FF R +Y + Sbjct: 298 NSMDDFFAKRPVDYTK 313 >gi|41387638|gb|AAS01682.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2] Length = 343 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 62/309 (20%), Positives = 116/309 (37%), Gaps = 27/309 (8%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W TE + DDL + LT++ER + F ++++ LV N Sbjct: 51 PDIGHLRALSIMNRWTETEFVISDDLRD---VSMLTEEERYFYRFLFTFLSAADDLVNLN 107 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155 I + S + Y Q EAVHS + + + L E P+I Sbjct: 108 I-DNLLGLFSQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAI 166 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 +K +W + + + + ++ ++ EG++F FA I L N Sbjct: 167 QSKLDWL--------------NKRVIECSSIAEKYILMILIEGIFFSASFAAIAYLRINN 212 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 V + I RDE++H+ + + K + + + EA +E A+ Sbjct: 213 LFVVTCQINNLISRDEAIHVEASCCIFKNYL-----MGPKPSIGRVQELFKEAVQIECAF 267 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 P L+ + Y+++ A+R ++ + P++ + + ++ NF Sbjct: 268 LRTAAPHNSQLLDVEAICSYVRYSADRLLKELDMPPIYNEPKPTADFPLALMTASNNTNF 327 Query: 336 FETRVTEYQ 344 FE R T Y Sbjct: 328 FERRNTAYS 336 >gi|261599112|ref|YP_003257364.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497769|gb|ACX84218.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 357 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 136/326 (41%), Gaps = 18/326 (5%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D P +Y WA+E + N HW+ TE+ MQ D+ W LTD E+ +I L F Sbjct: 6 DRLNFKPFEYQWAYEYWFKQQNAHWLHTEINMQSDIYDWNK--NLTDQEKNVIGDILKGF 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 A +E+ V N I + PE + E +H+ + Y+ LGLD F+ + Sbjct: 64 AQTETEVGNYWSEMIPKWFPIPEIKMMGQAFGSFETIHAAAYSYLNDILGLD---NFHAF 120 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E I K + + K +E + + +F EG+ ++ FA +L Sbjct: 121 LEDDVIMNKLKSLMDVRNSDHG-------KYNKEEIARSVALFSAAAEGVQLFSSFAVLL 173 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 S ++N++ G+ +Q + +RDESLH G + EN L + ++ + A Sbjct: 174 SFRKSNRLKGVGQQIIFSVRDESLHSEAGCKIFRTFCEENKGL-KEIVERSVYHGVDLAL 232 Query: 270 LLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325 E + + + + + +M+ AN + ++G + + W Sbjct: 233 KNEFVFIDKIFGGRDLCTIKREELKNFMKDRANMKLRELGFFDSYHVDRRMLDNMNWFYI 292 Query: 326 VIDLKKEKNFFETRVTEYQQGAELKW 351 I +++ +FF+ R T Y + E W Sbjct: 293 TISGEQQTDFFDNRETGYSKPNE-DW 317 >gi|18466786|ref|NP_569593.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16506102|emb|CAD09988.1| putative ribonucleoside-diphosphate reductase beta subunit [Salmonella enterica subsp. enterica serovar Typhi str. CT18] Length = 380 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 74/349 (21%), Positives = 130/349 (37%), Gaps = 38/349 (10%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 AN+ P+ G+ VNV AR D KY + + W P EV + Sbjct: 10 ANDATKEPMFLGQS-VNV-------ARYDQQ-----KYRDFEKLIEKQLSFFWRPEEVDI 56 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D + + L + ER + NL + +S+ + + +S PE ++ + Sbjct: 57 TTDRIDFNT--KLQEHERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPELETWVETWS 114 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-------- 173 F E +HS ++ +II + D +F+ I ++A L + Sbjct: 115 FSETIHSRSYTHIIRGMVDDPSIVFDGIVTDEEIISRAVSISSEYDRLYEMTCARQHLGE 174 Query: 174 ---------FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 G Q L V E + FY FA + G + G + Sbjct: 175 DEFERLYISEFDGKPYPLQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKLLEGNTKIM 234 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETM 280 ++I RDE+LH +I ++ L K E + + + E+ +A Sbjct: 235 RFIARDEALHCEGTERMIRFMRTGREGLMWKMIAAEEESFIYQTMMDVAGQEMRWADYLF 294 Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVI 327 G +GLNA + Y+++ N ++GL LF ++P WM++ + Sbjct: 295 KDGSMIGLNADILKSYVKYRTNLAMRRLGLRQLFPEIKDDPLVWMNKWL 343 >gi|270291189|ref|ZP_06197412.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus acidilactici 7_4] gi|304385474|ref|ZP_07367819.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus acidilactici DSM 20284] gi|270280585|gb|EFA26420.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus acidilactici 7_4] gi|304328681|gb|EFL95902.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus acidilactici DSM 20284] Length = 317 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 62/303 (20%), Positives = 113/303 (37%), Gaps = 26/303 (8%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + W+ T +P+ +DL+ W+ L +D + ++ G ++L + + + A+ Sbjct: 21 WEKLTEQFWLDTRIPISNDLSDWR---ELDEDHQWVVGHVFGGLTLLDTLQSQDGMAALR 77 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163 + + P L F E+VH+ ++ I +L E+F + K + Sbjct: 78 KDVRTPHETAVLNNIQFMESVHAKSYSSIFETLNTPTEIDEIFEWSDSEEFLQNKTKFIY 137 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 D L+ V E FY+GF L NK+ +AE Sbjct: 138 DLYHD-------------DGHPLKKKIS-SVFLETFLFYSGFFTPLYYLGHNKLNNVAEI 183 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + I+RDES+H + + +E + L++ E Y H+ + Sbjct: 184 IKLILRDESVHGTYIGYKFQLGMKDLGENEQQELKDWMYNFLYDLYANEEKYVHKVYDQ- 242 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340 VG + ++ AN+ +G +PLF TE NP M+ + +FF Sbjct: 243 -VGWT-EEVLTFTRYNANKALMNLGQDPLFPDTEADVNPIV-MNGISTGTSNHDFFSQVG 299 Query: 341 TEY 343 Y Sbjct: 300 NGY 302 >gi|327440528|dbj|BAK16893.1| ribonucleotide reductase, beta subunit [Solibacillus silvestris StLB046] Length = 320 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 64/305 (20%), Positives = 118/305 (38%), Gaps = 21/305 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W P E+ + D+ WK + + K+ G +++ N + I Sbjct: 22 FWDQQWKQIWFPEEIAVSKDVKQWKEF-----EHQDTYKKVFGGLTLLDTVQTNIGMNEI 76 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 ++ + + + L EA+H+ ++ YI T+L + E+F ++ + KAN Sbjct: 77 AKYTPDFQEKAVLTVFGSFEAIHAKSYSYIFTTLCTNTEIDEVFEWVQKNEFLQYKANRI 136 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + T K+ D E L V+ E FY+GF L LG + AE Sbjct: 137 GEVY---------TAIKEDDPESLWKAMFASVMLESFLFYSGFFYPLYLGGQGVLRNSAE 187 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H I +E L + E+ Y + + Sbjct: 188 VISLILRDESIHGVAVGFFAQNIFKTFTEEKQQELTLWGYEYLLDLYQNEMKYTDDLYAE 247 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + P ++Y+++ AN+ +GL+ +F E NP M+ + + +FF + + Sbjct: 248 TGLS---PEVKKYVRYNANKALMNLGLDTMFPDEEVNPVV-MNGISNTGSTYDFFSQKGS 303 Query: 342 EYQQG 346 Y Sbjct: 304 TYAVA 308 >gi|126650012|ref|ZP_01722245.1| ribonucleotide-diphosphate [Bacillus sp. B14905] gi|126593184|gb|EAZ87146.1| ribonucleotide-diphosphate [Bacillus sp. B14905] Length = 322 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 118/305 (38%), Gaps = 21/305 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W P E+ + D+ WKS + + K+ +++ N + + Sbjct: 22 FWDQQWKQIWFPEEIAVSKDIKQWKSF-----EHQDTYKKVFAGLTLLDTVQTNIGMNRV 76 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 + + + + L EA+H+ ++ YI T+L +E ELF ++ + KAN Sbjct: 77 AAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEYLQYKANKI 136 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 ++ ++ D E L V+ E FY+GF L LG + AE Sbjct: 137 ADIYNSI---------EEGDSESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAE 187 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H + + + Q +L + E+ Y + + Sbjct: 188 IISLILRDESIHGVAVGFFAQNLYKQFSKEKQESLQLWGYELLLDLYQNEMKYTEDIYAE 247 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + P + Y+++ AN+ +G E +F E NP M+ + + +FF + Sbjct: 248 TGLS---PEVKAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKGA 303 Query: 342 EYQQG 346 Y + Sbjct: 304 TYAKA 308 >gi|321309596|ref|YP_004191925.1| ribonucleotide reductase subunit beta [Mycoplasma haemofelis str. Langford 1] gi|319801440|emb|CBY92086.1| ribonucleotide reductase of class Ib (aerobic), beta subunit [Mycoplasma haemofelis str. Langford 1] Length = 327 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 64/311 (20%), Positives = 122/311 (39%), Gaps = 22/311 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ E+P+ D +W LT++E+ + K+ L ++ + + I Sbjct: 25 FWNQNVRQFWIDEEIPLSGDKLIWA--AELTENEKDVYKKVLVGLTLLDTHQGSLGMTNI 82 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA 162 + NP L E +H+ ++ I ++L + ELF + P + K Sbjct: 83 AMSIDNPHATAVLQFMGMMEQMHAKSYSTIFSTLATSQEIEELFKWSEQNPELQKKMEII 142 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + + + D E L V V E FY+GF +L L M+ E Sbjct: 143 SHHYENI-----------QDDESLYMAMVASVFLESFLFYSGFYYMLLLAGKGMMINSGE 191 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDE++H + + +I KE ++K +L E EI Y K Sbjct: 192 IINLIIRDEAIHGLYIGVLSMEIFKTFNEEKQKEMKEKVICLLRELMANEIKYTELIYSK 251 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETR 339 + +++++ AN+ +G E + T+ NP + + + K +FF T+ Sbjct: 252 IGL---VEDVNRFLEYNANKALQNLGFENEYSTTDKDINPIVF-NGLKTTTKSHDFFSTK 307 Query: 340 VTEYQQGAELK 350 Y + +++ Sbjct: 308 GNGYIKTTKVE 318 >gi|169827410|ref|YP_001697568.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus sphaericus C3-41] gi|168991898|gb|ACA39438.1| Ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus sphaericus C3-41] Length = 318 Score = 192 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 118/305 (38%), Gaps = 21/305 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W P E+ + D+ WKS + + K+ +++ N + + Sbjct: 18 FWDQQWKQIWFPEEIAVSKDIQQWKSF-----EHQDTYKKVFAGLTLLDTVQTNIGMNRV 72 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 + + + + L EA+H+ ++ YI T+L +E ELF ++ + KAN Sbjct: 73 AAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEYLQYKANKI 132 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 ++ ++ D E L V+ E FY+GF L LG + AE Sbjct: 133 ADIYNSI---------EEGDAESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAE 183 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H + + + Q +L + E+ Y + + Sbjct: 184 IISLILRDESIHGVAVGFFAQNLYKQFSKEKQEALQLWGYELLLDLYQNEMKYTEDIYAE 243 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + P + Y+++ AN+ +G E +F E NP M+ + + +FF + Sbjct: 244 TGLS---PEVKAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKGA 299 Query: 342 EYQQG 346 Y + Sbjct: 300 TYAKA 304 >gi|260583950|ref|ZP_05851698.1| ribonucleoside-diphosphate reductase, beta subunit [Granulicatella elegans ATCC 700633] gi|260158576|gb|EEW93644.1| ribonucleoside-diphosphate reductase, beta subunit [Granulicatella elegans ATCC 700633] Length = 336 Score = 192 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 65/329 (19%), Positives = 122/329 (37%), Gaps = 30/329 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D NQ+ + WEK W+ T +P+ +DL W++ L+ E+ ++ + G Sbjct: 26 DWNQVEDMIDKMTWEKL---TEQFWLDTRIPVSNDLDDWRT---LSPAEKDVVGKVFGGL 79 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + ++ F E+VH+ ++ I ++L + E+F Sbjct: 80 TLLDTLQSEEGASLMKDYVRTQHEEAVWNNIQFMESVHAKSYSTIFSTLHTKAEIEEIFE 139 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + Q+ + V + E FY+GF Sbjct: 140 WTNNNEFLQYKAQKINEIYQS---------------RDALKMKVASTMLETFLFYSGFFT 184 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + Q E P + + + E Sbjct: 185 PLYYLGNNKLANVAEIIKLIIRDESVHGTYTGYKFQQGYNELPLEEQETLKMWVYQLCLE 244 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325 E+ Y + VG + ++++ AN+ +G +PLF T M+ Sbjct: 245 LYQNEVKYTQSIYDQ--VGWT-EKVKVFIRYNANKALQNLGFDPLFPDTAEDVDPIVMNG 301 Query: 326 VIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y G ++ D Sbjct: 302 ISTGTSNHDFFSQVGNGYLLGTVEAMEDD 330 >gi|28377561|ref|NP_784453.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum WCFS1] gi|254555734|ref|YP_003062151.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum JDM1] gi|300769755|ref|ZP_07079637.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179714|ref|YP_003923842.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270393|emb|CAD63296.1| ribonucleoside-diphosphate reductase, beta chain [Lactobacillus plantarum WCFS1] gi|254044661|gb|ACT61454.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum JDM1] gi|300492663|gb|EFK27849.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045205|gb|ADN97748.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus plantarum subsp. plantarum ST-III] Length = 336 Score = 192 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 63/303 (20%), Positives = 115/303 (37%), Gaps = 25/303 (8%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + W+ T +P+ +D+A W+ L DD R ++ G ++L + + + A+ Sbjct: 34 WEKLTEQFWLDTRIPVSNDMADWR---ELDDDHRWVVGHVFGGLTLLDTLQSQDGLQALR 90 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163 R++ L F E+VH+ ++ I +L + E+F+ + AKA W Sbjct: 91 RNVLTSHETAVLNNIQFMESVHAKSYSTIFETLNTPDEINEIFDWSDSEEFLQAKAQWIY 150 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + + V V E FY+GF L N++ +AE Sbjct: 151 KLYDNIDEDPLKQK-------------VANVFLETFLFYSGFYTPLYYLGHNQLPNVAEI 197 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + I+RDES+H + + EF+ L++ E Y H + Sbjct: 198 IKLILRDESVHGTYIGYKFQLGFKDRSEKQQAEFKDWMFDFLYKLYENEENYIH--LVYD 255 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340 +G + + ++ AN+ +G + LF T NP M+ + +FF Sbjct: 256 QIGWS-DEVLTFSRYNANKALMNLGQDALFPDTAEDVNPVV-MNGISTGTSNHDFFSQVG 313 Query: 341 TEY 343 Y Sbjct: 314 NGY 316 >gi|296316020|ref|YP_003662484.1| ribonucleotide reductase subunit 2 [Bovine herpesvirus 5] gi|40456143|gb|AAR86121.1| UL40 ribonucleotide reductase small subunit [Bovine herpesvirus 5] Length = 315 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 122/319 (38%), Gaps = 35/319 (10%) Query: 38 KYGWAWE--------KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 KY + +E + N W+ TE P+ DD L+ E + F Sbjct: 13 KYKYFYEAECPDIDHLRSLSVANRWLETEFPLADDAKD---VARLSGAELEFYRFLFAFL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + + Y + Q E VHS + I L ++ Y Sbjct: 70 SAADDLVNVNL-GNLSELFTQKDILHYYIEQESIEVVHSRVYSAIQLLLFKNDAVARAGY 128 Query: 150 REV----PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 E P++ K +W + + A E + + +V ++ EG++F + F Sbjct: 129 VEDALSDPAVRRKVDWLER--------------RVAAAESVAEKYVLMILIEGIFFSSSF 174 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N V + I RDE++H + N + + R + Sbjct: 175 AAIAYLRTHNLFVVTCQTNDLISRDEAVHTTASCCIFNNYLGGE-----RPPPDRVRKLF 229 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 EA +E + P+G L+ + Y+++ A+R I L PLF + Sbjct: 230 REAVEIEREFIWSRAPRGSHILDVEAISAYVEYSADRLLAAIHLPPLFGTPPPGTDFPLA 289 Query: 326 VIDLKKEKNFFETRVTEYQ 344 ++ +K NFFE R T Y Sbjct: 290 LMTAEKHTNFFERRSTTYT 308 >gi|332638431|ref|ZP_08417294.1| ribonucleotide-diphosphate reductase subunit beta [Weissella cibaria KACC 11862] Length = 320 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 115/319 (36%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ WEK W+ T +P+ +DL W+ +T++E ++ G Sbjct: 9 NWNEVEDAIDKATWEKL---TEQFWLDTRIPLSNDLDDWR---KMTEEEHYLVGHVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++L + + + ++ R + L F E+VH+ ++ I +L E+F+ Sbjct: 63 TLLDTLQSQDGMASLKRSVRTQHEEAVLNNIEFMESVHAKSYSSIFETLNTPAEIDEIFS 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA Q QT V E FY+GF Sbjct: 123 WTNTNDFLQYKAQRINQIYQTGDDLQKKV---------------ASVFLETFLFYSGFYT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E E + +L + Sbjct: 168 PLWYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQLGFNELTEDQQSEMKMWMYDLLLD 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 E Y +G S ++++ AN+ +G +PLF NP M+ Sbjct: 228 LYNNEEQYTKHLYDG--IGWT-ESVLTFLRYNANKALMNLGQDPLFPDGAEDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTTTSNHDFFSQVGNGY 302 >gi|58700135|ref|ZP_00374651.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58533347|gb|EAL57830.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] Length = 225 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 11/234 (4%) Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 L + E +H + Y++ ++G+ E E + + + ++ K + L+ F Sbjct: 1 MMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDAMRKKYEYMLE---------F 50 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 K + + L VF EG+ + FA +L+ R KM G+ + + RDE+LH Sbjct: 51 EESKKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRFGKMKGMGQIIAWSARDETLH 110 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCE 293 N I + N EN +W EF+++ + LE + G V L+A Sbjct: 111 TNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELEDEFIKLAFDLGDVEGLSAEEVR 170 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 Y++++ANRR Q+GLE ++ +NP PW+ E+++ + NFFE RVTEY + A Sbjct: 171 NYIRYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEHTNFFENRVTEYSRAA 224 >gi|216905873|ref|YP_002333501.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 9] gi|216410027|dbj|BAH02445.1| small subunit of ribonucleotide reductase [Equid herpesvirus 9] Length = 321 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 117/305 (38%), Gaps = 18/305 (5%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ T++P+ DDL LT ER + F ++++ LV N Sbjct: 28 PDIEHLRSLSVANRWLDTDLPISDDLKD---VAKLTPAEREFYRFLFAFLSAADDLVNLN 84 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 + + + + Y + Q E HS + I L ++ + A+ Sbjct: 85 L-GDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDA----------AARARY 133 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 ++ + K + + + ++ ++ EG++F + FA I L N V Sbjct: 134 VASIIGDAAIKRKVAWLQAKVRECGSVAEKYILMILIEGLFFASSFASIAYLRTHNLFVV 193 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + I RDE++H + N + K ++ + EA +E + Sbjct: 194 TCQSNDLISRDEAIHTRASCCIYNNYLGG----FEKPEPKRIYELFSEAVNIECEFLLSH 249 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 P+ L+ Y+++ A+R +IGL PLF + + + ++K NFFE R Sbjct: 250 APQNSHLLDIGEIISYVRYSADRLLGEIGLSPLFNAPKPSTSFPLAFMTVEKHTNFFERR 309 Query: 340 VTEYQ 344 T Y Sbjct: 310 STAYS 314 >gi|13358428|ref|NP_078636.1| Ribonucleotide reductase small subunit [Lymphocystis disease virus 1] Length = 378 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 80/314 (25%), Positives = 122/314 (38%), Gaps = 18/314 (5%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P Y WA E N HW E+ + DD++ WK+ LT E+ I + L F Sbjct: 71 VFKPFHYSWAVEIRALHENIHWTEKELSLADDVSDWKT-GKLTLFEKDFIIQILRLFTQL 129 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + N E R L A E H + + +LGL E E Sbjct: 130 DVSVGHIYHNIFIPIFKNNELRNMLCSFACREGTHQQAYALLNDTLGLPETEYST----- 184 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 L Y + + + K + + + V EG+ + FA +L+ Sbjct: 185 ---------FLNYKEMTNKTIYMNDMKTDNLSEIALSLIKAVYNEGVVLFASFAMLLNFQ 235 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 R M G+ + ++ +RDE++H+ + E + T+EF R + E LE Sbjct: 236 RFGTMKGMGKVIEWSIRDENIHVEGLCKLFKTFISEYSFILTEEFFSAVRKIQAEVLQLE 295 Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIG-LEPLFKYTENPFPWMSEVIDL 329 + GL Y+++I RR Q+G LE NP W+S +I Sbjct: 296 TDFIILLFTNITEIKGLTKLCMINYVKYILQRRTEQLGLLESTEVLLTNPIDWISWLIAG 355 Query: 330 KKEKNFFETRVTEY 343 + NFFE RVTEY Sbjct: 356 RNITNFFENRVTEY 369 >gi|170017903|ref|YP_001728822.1| ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20] gi|169804760|gb|ACA83378.1| Ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20] Length = 324 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 71/317 (22%), Positives = 127/317 (40%), Gaps = 25/317 (7%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + WEK W+ T +P+ +DL W+ ++D ER + G Sbjct: 13 NWNNIEDELDKATWEKL---TQQFWLDTRIPISNDLRTWR--GNMSDQERQTLNLVFGGL 67 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 + ++L + + + ++ + N + L F E+VH+ ++ I +L ++ E+ ++ Sbjct: 68 TTLDTLQSQDGMASLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETL-NEKSEIEAIF 126 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 S N LQY + + TGT + + V E FY+GF L Sbjct: 127 DWADS-----NEFLQYKANRINDIYQTGTPLEKK-------IASVFLETFLFYSGFYTPL 174 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NKM+ +AE + I+RDES+H + + P + Q +L+E Sbjct: 175 YFLGHNKMLNVAEIIKLIIRDESVHGTYIGYKFQIGFNKLPESESTALQSWMYDLLYELY 234 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326 E Y HE +G ++++ AN+ +G EP+F NP M+ + Sbjct: 235 ENEEKYTHELYDD--LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGI 290 Query: 327 IDLKKEKNFFETRVTEY 343 +FF Y Sbjct: 291 STSTANHDFFSGVGNGY 307 >gi|27467432|ref|NP_764069.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis ATCC 12228] gi|57866341|ref|YP_187991.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis RP62A] gi|251810165|ref|ZP_04824638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis BCM-HMP0060] gi|282875687|ref|ZP_06284558.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis SK135] gi|293368193|ref|ZP_06614822.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W2(grey)] gi|27314975|gb|AAO04111.1|AE016745_210 ribonucleoside-diphosphate reductase minor subunit [Staphylococcus epidermidis ATCC 12228] gi|57636999|gb|AAW53787.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus epidermidis RP62A] gi|251806217|gb|EES58874.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis BCM-HMP0060] gi|281295714|gb|EFA88237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis SK135] gi|291317616|gb|EFE58033.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W2(grey)] gi|329723280|gb|EGG59810.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU144] gi|329736749|gb|EGG73014.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU028] gi|329737954|gb|EGG74178.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU045] Length = 322 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 70/331 (21%), Positives = 128/331 (38%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LTD E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDSEKNTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + I H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + K++ ++ L K+A V V E F Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIVENYHKLWG-------KEASIYDQYIARVSSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF L L KM E + I+ DES+H F ++ E ++ Q+ Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L+E E++Y H + A Y+++ N+ +G EP F+ E NP Sbjct: 226 YKLLNELYDNEVSYTHLLYDDIGL---AEDVLNYVRYNGNKALSNLGFEPYFEEREFNPI 282 Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTSTKNHDFFSVKGDGYTLALNVE 311 >gi|327409820|ref|YP_004347240.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus] gi|326784994|gb|AEA07128.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus] Length = 319 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 69/311 (22%), Positives = 129/311 (41%), Gaps = 24/311 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y +HW+P EV D W+ L+ +E+ K L FFA + LV N+V Sbjct: 20 YYQKLKKSHWIPEEVDTSKDAQDWQ---LLSKEEKSFAKLILAFFAQFDGLVVENLVRHF 76 Query: 105 YRHLS--NPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKAN 160 + +S E + + QA E +H+ T+ +I L + + SI A+ Sbjct: 77 QQEVSSFAKEIEWFYILQAANELIHNETYMNLINVLLPPSKRAKALDAISNYASIRKIAD 136 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 W ++ L + + + EG+ F FA + +N++ G+ Sbjct: 137 WVEKWMN--------------PAVPLPERIIAFAALEGVIFTGAFAAVYYFTISNRLKGL 182 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 ++I RDE+LH F + N + E ++ + Q++ +L A + ++ Sbjct: 183 RTANEWISRDEALHKKFAEVLYNFLVDEL-KVFERVSQERCHEILTSAIEAVTDFIKYSL 241 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 V ++A YM+ + + E ++ EN +M +I L+ + NFFE + Sbjct: 242 RLDNVNIDADRMLGYMKRAVDDLATGLKYEKVYN-AENTLDYML-LIGLENKGNFFEGVI 299 Query: 341 TEYQQGAELKW 351 T+Y +G ++ Sbjct: 300 TDYSKGMDMGD 310 >gi|242242101|ref|ZP_04796546.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis W23144] gi|242234414|gb|EES36726.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis W23144] gi|319401190|gb|EFV89405.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus epidermidis FRI909] Length = 322 Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats. Identities = 70/331 (21%), Positives = 128/331 (38%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LTD E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDSEKNTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + I H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + K++ ++ L K+A V V E F Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIVENYHKLWG-------KEASIYDQYIARVSSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF L L KM E + I+ DES+H F ++ E ++ Q+ Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L+E E++Y H + A Y+++ N+ +G EP F+ E NP Sbjct: 226 YKLLNELYDNEVSYTHLLYDDIGL---ADDVLNYVRYNGNKALSNLGFEPYFEEREFNPI 282 Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTSTKNHDFFSVKGDGYTLALNVE 311 >gi|239636654|ref|ZP_04677656.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus warneri L37603] gi|239598009|gb|EEQ80504.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus warneri L37603] gi|330683860|gb|EGG95634.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus epidermidis VCU121] Length = 324 Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats. Identities = 68/331 (20%), Positives = 126/331 (38%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ L++ E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSEAEKNTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + I H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + K++ ++ L K+A V V E F Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIIENYHKLWG-------KEASIFDQYIARVSSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF L L KM E + I+ DES+H F ++ E + Q+ Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEKQRADQEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L E E++Y H + A Y+++ N+ +G EP F+ E NP Sbjct: 226 YKLLKELYDNEVSYTHLLYDDIGL---AEDVLNYVKYNGNKALSNLGFEPYFEEREFNPI 282 Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYTLALNVE 311 >gi|326804582|ref|YP_004327453.1| Ribonucleotide-diphosphate reductase beta subunit [Salmonella phage Vi01] gi|301795232|emb|CBW37950.1| Ribonucleotide-diphosphate reductase beta subunit [Salmonella phage Vi01] Length = 367 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 72/321 (22%), Positives = 128/321 (39%), Gaps = 16/321 (4%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 + + + + + + Y + W P EV + D A + + L+ E+ + Sbjct: 20 PFFGDPVSIQRYDKVAWPFVQKWYEKGLSQFWRPEEVDVTKDKADFAT---LSAAEQHIY 76 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 NL +S+ A S PE + +L +EA+HS ++ +I+ + D Sbjct: 77 FSNLKRQTMLDSIQGAAPFEAFGPWASTPEAQFAILEWTRQEAIHSLSYTHILRNTVNDP 136 Query: 143 GELFNMYREVPSITAKANWALQYTQT--------LSSPSFTTGTKDADQEFLQDLFVFYV 194 G +F+ +V I A Y ++ +FT + Sbjct: 137 GIVFDHVLDVQEIVDCAGQISVYYDDMVRYSGMRMAGRAFTREDIMNAKRAFWRALFAAN 196 Query: 195 VFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH-- 251 EG+ FY FA + + NKM G A+ + I RDE HL +N++ + +P Sbjct: 197 SLEGVRFYVSFACSWAFMQFLNKMEGNAKIIRQIARDEQDHLILTQTFLNRLPLLDPDFG 256 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE 310 + +E + + M + E +A+ G +GLNA Q + ++A R IG Sbjct: 257 IIREELRGEMTQMYVDVVNQEKEWANYLFKDGSMLGLNANILHQMVDWLATHRMGAIGHP 316 Query: 311 -PLFKYTENPFPWMSEVIDLK 330 P +NP PW++E +D K Sbjct: 317 YPGQARKDNPVPWINEWLDNK 337 >gi|51557509|ref|YP_068343.1| ribonucleotide reductase subunit 2 [Suid herpesvirus 1] gi|1710400|sp|P50645|RIR2_SUHVK RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|437737|emb|CAA50977.1| ribonucleotide reductase [Suid herpesvirus 1] gi|525265|emb|CAA56776.1| ribonucleotid reductase, small subunit [Suid herpesvirus 1] gi|40253968|tpg|DAA02163.1| TPA_exp: small subunit of ribonucleotide reductase [Suid herpesvirus 1] gi|1090510|prf||2019240B ribonucleotide reductase:SUBUNIT=small Length = 303 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 61/305 (20%), Positives = 122/305 (40%), Gaps = 18/305 (5%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ T++P+ DD L++ E + F ++++ LV N Sbjct: 10 PDMDHLRSLSVANRWLETDLPLGDDAKD---VAALSEPELEFYRFLFAFLSAADDLVNVN 66 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 + ++ + + Y + Q E VHS + I L +R + + Sbjct: 67 L-GSLSELFTQKDILHYYIEQECIEVVHSRVYSAIQLML----------FRGDAAARERY 115 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 A + + ++ A+ + + ++ ++ EG++F + FA I L N V Sbjct: 116 VRAALRDEAIRRKVEWLDSRVAECASVAEKYLLMILIEGIFFASSFASISYLRTHNLFVV 175 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + +I RDE++H + + N + P + + + + EA +E + Sbjct: 176 TCQSNDFISRDEAIHTSASCCIYNNYLGDAP----RPDEARIHQLFAEAVEIECEFLRAR 231 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 P+ + L+ P+ Y+++ A+R IG PLF + ++ +K NFFE R Sbjct: 232 APRDSLLLDLPAIISYVRYSADRLLQAIGASPLFGAPAPAADFPMALMVAEKHTNFFERR 291 Query: 340 VTEYQ 344 T Y Sbjct: 292 STNYT 296 >gi|227529511|ref|ZP_03959560.1| ribonucleoside-diphosphate reductase [Lactobacillus vaginalis ATCC 49540] gi|227350596|gb|EEJ40887.1| ribonucleoside-diphosphate reductase [Lactobacillus vaginalis ATCC 49540] Length = 339 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 67/330 (20%), Positives = 126/330 (38%), Gaps = 30/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L D + + G Sbjct: 16 NWNEVSDMIDKATWEKL---TEQFWLDTRIPVSNDLDDWR---ELDTDHQWTVGHVFGGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + A+ + + L F E+VH+ ++ I ++L E E+F+ Sbjct: 70 TLLDTVQSEAGLTALKQDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPEEINEIFD 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA ++ +++ L+ V E FY+GF Sbjct: 130 WSDSEEYLQNKAVQIANIY------------RNPEEDPLKKKV-ANVFLETFLFYSGFYT 176 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + + ++ + L+E Sbjct: 177 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGMHDRTEKQQQDMKDWMYNFLYE 236 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y H + VG ++++ AN+ +G +PLF T NP M+ Sbjct: 237 LYDNEEKYTH--LLYDQVGWT-EDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 292 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF Y+ GA + D Sbjct: 293 GISTSTANHDFFSQVGNGYRLGAVEAMNDD 322 >gi|163786628|ref|ZP_02181076.1| ribonucleoside-diphosphate reductase , beta subunit 1 [Flavobacteriales bacterium ALC-1] gi|159878488|gb|EDP72544.1| ribonucleoside-diphosphate reductase , beta subunit 1 [Flavobacteriales bacterium ALC-1] Length = 429 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 138/337 (40%), Gaps = 22/337 (6%) Query: 21 DKRMLNARSDVN----QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 D++ N ++++ L P +Y + + +++W+ +E D+ +K++ LT Sbjct: 98 DEQARNRKTNIFEKRINLKPYEYPALNDYVDAIRHSYWIHSEFNFTSDIQDFKTR--LTV 155 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 E+ IK + + E V + IY + PE A E H + +++ Sbjct: 156 VEQNAIKNTMLAISQIEVAV-KSFWGEIYNKMPKPEIGAVGATFAESEVRHHDAYSHLLE 214 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 LGL+ F ++ P I + ++ + + ++E+ + + +F + Sbjct: 215 ILGLNNE--FKHLKKKPVIMKRVHYL--------ETALKNAKSEDNKEYAESILLFSLFI 264 Query: 197 EGMWFYTGFAQILSLGRANKM-VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 E + ++ F I++ + M G++ + ++E++H +FGID+I IK ENP + Sbjct: 265 EHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEENIHGDFGIDIIKIIKAENPTWFDA 324 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC-EQYMQFIANRRCHQIGLEPLFK 314 E + R + EA E G + ++++ N IG+E +F Sbjct: 325 EHNEIVRELCREAFASESELVDWIFEAGELEFLPKDVINEFLKNRFNNSLESIGIEKVFD 384 Query: 315 YTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348 E W + I K +FF R Y + + Sbjct: 385 VDETLLTQTEWFDDEIIGTKHGDFFVKRSINYSKRTK 421 >gi|312869696|ref|ZP_07729843.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus oris PB013-T2-3] gi|311094745|gb|EFQ53042.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus oris PB013-T2-3] Length = 339 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 63/319 (19%), Positives = 120/319 (37%), Gaps = 28/319 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +D+ W++ L +D + + G Sbjct: 16 NWNEISDMIDKATWEKL---TEQFWLDTRIPVSNDMDDWRN---LDEDHQWTVGHVFGGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + A+ + L F E+VH+ ++ I ++L + E+FN Sbjct: 70 TLLDTVQSEAGLTALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIDEIFN 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + ++ L+ V E FY+GF Sbjct: 130 WSDTEEYLQNKATKIANMY------------LNPAEDPLKKKV-ANVFLETFLFYSGFYT 176 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L N++ +AE + I+RDES+H + E ++ + L+E Sbjct: 177 PLYYLGHNELNNVAEIIKLILRDESVHGTYIGYKFQVGLHERTEKQQQDMKDWLYNFLYE 236 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y H K +G ++++ AN+ +G +PLF T NP M+ Sbjct: 237 LYDNEEKYTHLLYDK--IGWT-DDVLTFIRYNANKALMNLGQDPLFPDTAADVNPVV-MN 292 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 293 GISTSTSNHDFFSQVGNGY 311 >gi|223043034|ref|ZP_03613082.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus capitis SK14] gi|314933044|ref|ZP_07840410.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus caprae C87] gi|222443888|gb|EEE49985.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus capitis SK14] gi|313654363|gb|EFS18119.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus caprae C87] Length = 322 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 126/331 (38%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LTD E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDSEKETFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + I H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + K++ + L K+A V V E F Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIIDNYHKLWG-------KEASIFDQYIARVSSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF L L KM E + I+ DES+H F ++ E ++ Q+ Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L+E E++Y H + Y+++ N+ +G EP F+ E NP Sbjct: 226 YKLLNELYDNEVSYTHLLYDDIGL---TEDVLNYVRYNGNKALSNLGFEPYFEEREFNPI 282 Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTSTKNHDFFSVKGDGYTLALNVE 311 >gi|242372965|ref|ZP_04818539.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W1] gi|242349291|gb|EES40892.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis M23864:W1] Length = 322 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 126/331 (38%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ L+D ER K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSDSERETFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + I H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + K++ + L K+A V V E F Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIIDNYHKLWG-------KEASIFDQYIARVSSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF L L KM E + I+ DES+H F ++ E ++ Q+ Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L+E E++Y H + Y+++ N+ +G EP F+ E NP Sbjct: 226 YKLLNELYDNEVSYTHLLYDDIGL---TEDVLNYVRYNGNKALSNLGFEPYFEEREFNPI 282 Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTSTKNHDFFSVKGDGYTLALNVE 311 >gi|301066519|ref|YP_003788542.1| ribonucleotide reductase subunit beta [Lactobacillus casei str. Zhang] gi|300438926|gb|ADK18692.1| Ribonucleotide reductase, beta subunit [Lactobacillus casei str. Zhang] Length = 326 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 117/319 (36%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + WEK W+ T +P+ +DL W+S L DE+ ++ G Sbjct: 9 NWNAIEDEVDKATWEKL---TEQFWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++L + + + ++ +++ + L F E+VH+ ++ I ++L E+F+ Sbjct: 63 TLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFD 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KAN S+ V E FY+GF Sbjct: 123 WTNHNEHLQYKANKINDIYHNGSALQKKI---------------ASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + + +L + Sbjct: 168 PLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQQTLKDWMYDLLFD 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y ++ K ++++ AN+ +G E F T NP M+ Sbjct: 228 LYENEEKYTNDLYAK--TNWT-DEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTSTANHDFFSQVGNGY 302 >gi|90407600|ref|ZP_01215781.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp. CNPT3] gi|90311303|gb|EAS39407.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp. CNPT3] Length = 424 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 77/338 (22%), Positives = 140/338 (41%), Gaps = 18/338 (5%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R R N L P +Y E + +++W+ TE D+ +K L+ Sbjct: 92 RNEHSKDRKHNIFEKRINLKPYEYPEILEYVDAIRHSYWIHTEFNFTSDIQDFK--VRLS 149 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 ER +IKR + + E V IY + PE A E H + +++ Sbjct: 150 HPEREVIKRTMLAISQIEVSV-KTFWGNIYTKMPKPEIGSVGATFAESEVRHHDAYSHLL 208 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 LGL++ F+ E P I + + + + ++E+ + + +F + Sbjct: 209 EILGLNDE--FSKLEENPDIMTRVRYL--------ESALKHANSEDNKEYSESILLFSLF 258 Query: 196 FEGMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 E + ++ F I+S + N + GI+ + ++E LH NFGID+I IK ENP + Sbjct: 259 IEHVSLFSQFLIIMSFNKYKNMLKGISNVVEATSKEEQLHGNFGIDLIQIIKQENPSWFN 318 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLF 313 +E+QQ RT+ +A E +G + +++++ N+ I +E +F Sbjct: 319 EEYQQSVRTLCLQAFKSESKIIDWIYAEGELDFIPKAQVKEFIKNRFNQSLQSIDIEKVF 378 Query: 314 KYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348 + E W + I K +FF R Y + ++ Sbjct: 379 EIDEKLLEKTEWFDDEIIGTKHGDFFVKRSINYNKRSK 416 >gi|259046997|ref|ZP_05737398.1| ribonucleoside-diphosphate reductase 2, beta subunit [Granulicatella adiacens ATCC 49175] gi|259036316|gb|EEW37571.1| ribonucleoside-diphosphate reductase 2, beta subunit [Granulicatella adiacens ATCC 49175] Length = 346 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 62/318 (19%), Positives = 119/318 (37%), Gaps = 28/318 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D NQ+ + WEK W+ T +P+ +DL W++ L+ E+ ++ + G Sbjct: 36 DWNQVEDMIDKLTWEKL---TEQFWLDTRIPVSNDLDDWRT---LSPAEKDVVGKVFGGL 89 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + ++ F E+VH+ ++ I ++L + ++F Sbjct: 90 TLLDTLQSEEGASLMKDYVRTQHEEAVWNNIQFMESVHAKSYSTIFSTLHTKAEIEDIFE 149 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + Q+ + + V + E FY+GF Sbjct: 150 WTNNNEYLQFKAKKINEIYQS---------------KDALKMKVASTMLETFLFYSGFFT 194 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + Q E +E + + E Sbjct: 195 PLYYLGNNKLANVAEIIKLIIRDESVHGTYTGYKFQQGYNELSEQEQEEMKMWVYNLCLE 254 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325 E+ Y + VG + ++++ AN+ +G +PLF T M+ Sbjct: 255 LYQNEVKYTQSIYDQ--VGWT-EKVKVFIRYNANKALQNLGFDPLFPDTAEDVDPIVMNG 311 Query: 326 VIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 312 ISTGTSNHDFFSQVGNGY 329 >gi|116494955|ref|YP_806689.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus casei ATCC 334] gi|191638466|ref|YP_001987632.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus casei BL23] gi|227535043|ref|ZP_03965092.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631445|ref|ZP_04674476.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116105105|gb|ABJ70247.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactobacillus casei ATCC 334] gi|190712768|emb|CAQ66774.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus casei BL23] gi|227187358|gb|EEI67425.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525910|gb|EEQ64911.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327382498|gb|AEA53974.1| hypothetical protein LC2W_1641 [Lactobacillus casei LC2W] gi|327385696|gb|AEA57170.1| hypothetical protein LCBD_1674 [Lactobacillus casei BD-II] Length = 326 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 117/319 (36%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + WEK W+ T +P+ +DL W+S L DE+ ++ G Sbjct: 9 NWNAIEDEVDKATWEKL---TEQFWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++L + + + ++ +++ + L F E+VH+ ++ I ++L E+F+ Sbjct: 63 TLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFD 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KAN S+ V E FY+GF Sbjct: 123 WTNHNEHLQYKANKINDIYHNGSALQKKI---------------ASVFLETFLFYSGFFT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P + + +L + Sbjct: 168 PLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQQTLKDWMYDLLFD 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y ++ K ++++ AN+ +G E F T NP M+ Sbjct: 228 LYENEEKYTNDLYAK--TNWT-DEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTSTANHDFFSQVGNGY 302 >gi|50313261|ref|YP_053065.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 1] gi|132625|sp|P28847|RIR2_EHV1B RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|42795147|gb|AAS45904.1| small subunit of ribonucleotide reductase [Equid herpesvirus 1] gi|49617004|gb|AAT67277.1| ribonucleotide reductase RR2 [Equid herpesvirus 1] Length = 321 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 118/305 (38%), Gaps = 18/305 (5%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ T++P+ DDL LT ER + F ++++ LV N Sbjct: 28 PDIEHLRSLSVANRWLDTDLPISDDLKD---VAKLTPAEREFYRFLFAFLSAADDLVNLN 84 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 + + + + Y + Q E HS + I L ++ + A+ Sbjct: 85 L-GDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDA----------AARARY 133 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 ++ + K + + + ++ ++ EG++F + FA I L N V Sbjct: 134 VASIIGDAAIGRKVAWLQAKVRECGSVAEKYILMILIEGLFFASSFASIAYLRTHNLFVV 193 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + I RDE++H + N + K ++ + EA +E + Sbjct: 194 TCQSNDLISRDEAIHTRASCCIYNNYLGG----FEKPEPKRIYELFSEAVNIECEFLLSH 249 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 P+ L+ + Y+++ A+R +IGL PLF + + + ++K NFFE R Sbjct: 250 APQYSHLLDIGAIISYVRYSADRLLGEIGLSPLFNAPKPSPSFPLAFMTVEKHTNFFERR 309 Query: 340 VTEYQ 344 T Y Sbjct: 310 STAYS 314 >gi|227891214|ref|ZP_04009019.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus salivarius ATCC 11741] gi|227867088|gb|EEJ74509.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus salivarius ATCC 11741] Length = 326 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 29/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L WEK W+ T +P+ +DL+ W+ N +D++ ++ + G Sbjct: 9 NWNALEDEIDKATWEKL---TEQFWLDTRIPLSNDLSDWREFN---EDDKDIVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 ++L + + + ++ + + + F E+VH+ ++ I ++L + E+F+ Sbjct: 63 TLLDTLQSQDGMSSLKKDVRTQHEEAVMNNIEFMESVHAKSYSSIFSTLNTPKEIEEIFD 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 N LQY + + G+ + V V E FY+GF Sbjct: 123 WTNS--------NEILQYKANRINEIYQNGSPLQKK-------VASVFLETFLFYSGFYT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E +EF +L+E Sbjct: 168 PLYWLGHNKLANVAEIIKLILRDESVHGTYIGYKFQLGFNELSDDEQEEFTSWMYDLLYE 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFP-WMS 324 E Y H K VG ++++ AN+ +G++PLF Y +N P M+ Sbjct: 228 LYENEEKYTHLLYDK--VGWT-DDVLVFLRYNANKALMNLGMDPLFADGYAQNVNPVVMN 284 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 285 GISTSTSNHDFFSQVGNGY 303 >gi|90962208|ref|YP_536124.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus salivarius UCC118] gi|301300452|ref|ZP_07206652.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821402|gb|ABE00041.1| Ribonucleoside-diphosphate reductase beta chain [Lactobacillus salivarius UCC118] gi|300214875|gb|ADJ79291.1| Ribonucleoside-diphosphate reductase beta chain [Lactobacillus salivarius CECT 5713] gi|300851949|gb|EFK79633.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 326 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 29/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L WEK W+ T +P+ +DL+ W+ N +D++ ++ + G Sbjct: 9 NWNALEDEIDKATWEKL---TEQFWLDTRIPLSNDLSDWREFN---EDDKDVVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 ++L + + + ++ + + + F E+VH+ ++ I ++L + E+F+ Sbjct: 63 TLLDTLQSQDGMSSLKKDVRTQHEEAVMNNIEFMESVHAKSYSSIFSTLNTPKEIEEIFD 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 N LQY + + G+ + V V E FY+GF Sbjct: 123 WTNS--------NEILQYKANRINEIYQNGSPLQKK-------VASVFLETFLFYSGFYT 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E +EF +L+E Sbjct: 168 PLYWLGHNKLANVAEIIKLILRDESVHGTYIGYKFQLGFNELSDDEQEEFTSWMYDLLYE 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFP-WMS 324 E Y H K VG ++++ AN+ +G++PLF Y +N P M+ Sbjct: 228 LYENEEKYTHLLYDK--VGWT-DDVLVFLRYNANKALMNLGMDPLFADGYAQNVNPVVMN 284 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 285 GISTSTSNHDFFSQVGNGY 303 >gi|259502687|ref|ZP_05745589.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM 16041] gi|259169332|gb|EEW53827.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM 16041] Length = 339 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 120/319 (37%), Gaps = 28/319 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W++ L +D + + G Sbjct: 16 NWNEVSDMIDKATWEKL---TEQFWLDTRIPVSNDLDDWRN---LDEDHQWTVGHVFGGL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ + + A+ + L F E+VH+ ++ I ++L + E+FN Sbjct: 70 TLLDTVQSEAGMTALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNSPDEIDEIFN 129 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + ++ L+ V E FY+GF Sbjct: 130 WSDTEEYLQNKATKIANMY------------LNPAEDPLKKKV-ANVFLETFLFYSGFYT 176 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L N++ +AE + I+RDES+H + E ++ + L+E Sbjct: 177 PLYYLGHNELNNVAEIIKLILRDESVHGTYVGYKFQVGLHERTEKQQQDMKDWMYNFLYE 236 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y H K +G ++++ AN+ +G +PLF T NP M+ Sbjct: 237 LYDNEEKYTHLLYDK--IGWT-DDVLTFIRYNANKALMNLGQDPLFPDTATDVNPVV-MN 292 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 293 GISTSTSNHDFFSQVGNGY 311 >gi|331701739|ref|YP_004398698.1| ribonucleoside-diphosphate reductase [Lactobacillus buchneri NRRL B-30929] gi|329129082|gb|AEB73635.1| Ribonucleoside-diphosphate reductase [Lactobacillus buchneri NRRL B-30929] Length = 318 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 59/303 (19%), Positives = 112/303 (36%), Gaps = 26/303 (8%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + W+ T +P+ +DL+ W++ L D + ++ G ++L + + ++ Sbjct: 22 WEKLTEQFWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGMASLR 78 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163 + + L F E+VH+ ++ I ++L + E+F+ + KA Sbjct: 79 KDVQTQHETAVLNNIQFMESVHAKSYSSIFSTLNTPDQIDEIFDWSDSEEFLQNKALKIR 138 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 P V V E FY+GF L NK+ +AE Sbjct: 139 DIYANEPDP--------------LKKKVASVFLETFLFYSGFYTPLWYLGHNKIPNVAEI 184 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + I+RDES+H + + P ++ + L++ E Y H + Sbjct: 185 IKLILRDESVHGTYIGYKFQIGYNQLPKEKQEDMKNWIYDFLYKLYGNEEKYTH--ILYD 242 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340 G ++++ AN+ +G +PLF T NP M+ + +FF Sbjct: 243 QTGWT-EDVLTFIRYNANKALMNLGQDPLFPDTAEDVNPVV-MNGISTSTANHDFFSQVG 300 Query: 341 TEY 343 Y Sbjct: 301 NGY 303 >gi|86140897|ref|ZP_01059456.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Leeuwenhoekiella blandensis MED217] gi|85832839|gb|EAQ51288.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Leeuwenhoekiella blandensis MED217] Length = 427 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 76/337 (22%), Positives = 140/337 (41%), Gaps = 22/337 (6%) Query: 21 DKRMLNARSDVN----QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +KR L ++++ L P +Y E + +++W+ TE D+ +K+ GL++ Sbjct: 96 NKRALERKTNIFEKRINLKPYEYPELNEYVAAIRHSYWIHTEFNFTSDIQDFKT--GLSE 153 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 ER IK + + E V ++ L PE A E H + +++ Sbjct: 154 VERSAIKNTMLAISQIEVAV-KTFWGDVHHRLPKPEIAAVGATFAESEVRHHDAYSHLLE 212 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 LGL+ E F ++ P I + ++ S D D+E+ + + +F + Sbjct: 213 ILGLN--EEFKELKKKPVIMKRVHYL--------ETSLKHAKSDDDREYTESILLFALFI 262 Query: 197 EGMWFYTGFAQILSLGRANKM-VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 E + ++ F I++ + M GI+ + ++E +H +FG+D+IN IK ENP + + Sbjct: 263 EHVSLFSQFLIIMAFNKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKENPEWFDE 322 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFK 314 E + M + E KG + ++++ N+ IGLE LF Sbjct: 323 EHNNLIKEMCLNSFEAESKVVDWIFEKGELDFLPKAVINEFLKNRFNKSLEAIGLEKLFD 382 Query: 315 YTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348 E W + I K +FF R Y + + Sbjct: 383 IDEALLQETEWFDDEIIGTKHGDFFVKRSINYSKRTQ 419 >gi|281491477|ref|YP_003353457.1| ribonucleoside-diphosphate reductase subunit beta [Lactococcus lactis subsp. lactis KF147] gi|281375195|gb|ADA64708.1| Ribonucleoside-diphosphate reductase, beta chain [Lactococcus lactis subsp. lactis KF147] Length = 325 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 121/319 (37%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D N + + WEK + W+ T VP+ +DL W+ L ER + Sbjct: 17 DWNSIEDSIDKYTWEKL---TSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGL 70 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L + + + P+ F E+VH+ ++ I ++L + ELFN Sbjct: 71 TLLDTLQSVDGAEVLKHDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFN 130 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + +GT + V V E FY+GF Sbjct: 131 WVDTNVYMQTKAE--------IINKIYESGTPLQKK-------VASVFLETCLFYSGFYT 175 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NKM+ AE + I+RDES+H + E EF+ +L++ Sbjct: 176 PLRYLGNNKMINSAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDEQGEFRDWMYELLYQ 235 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y+H K VG ++++ AN+ +G +PLF T NP M+ Sbjct: 236 LYENEEKYSHLLYDK--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTAADVNPVV-MN 291 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 292 GISTSSSNHDFFSQVGNSY 310 >gi|299537049|ref|ZP_07050352.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus fusiformis ZC1] gi|298727290|gb|EFI67862.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus fusiformis ZC1] Length = 322 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 61/305 (20%), Positives = 117/305 (38%), Gaps = 21/305 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W P E+ + D+ WKS + + K+ +++ N + + Sbjct: 22 FWDQQWKQIWFPEEIAVSKDIKQWKSF-----EHQDTYKKVFAGLTLLDTVQTNIGMNRV 76 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 + + + + L EA+H+ ++ YI T+L +E ELF ++ + KAN Sbjct: 77 AAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEFLQYKANKI 136 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 ++ ++ + E L V+ E FY+GF L LG + AE Sbjct: 137 ADIYNSI---------EEGNPESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAE 187 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDES+H + + +E +L + E+ Y + + Sbjct: 188 IISLILRDESIHGVAVGFFAQNLFKQFSKEKQEELHLWGYELLLDLYQNEMKYTDDIYAE 247 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + P Y+++ AN+ +G E +F E NP M+ + + +FF + Sbjct: 248 TGLS---PEVRAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKGA 303 Query: 342 EYQQG 346 Y + Sbjct: 304 TYAKA 308 >gi|282599256|ref|YP_003358568.1| NrdB ribonucleotide reductase subunit beta [Shigella phage phiSboM-AG3] gi|226973562|gb|ACO94315.1| NrdB ribonucleotide reductase subunit beta [Shigella phage phiSboM-AG3] Length = 367 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 68/304 (22%), Positives = 121/304 (39%), Gaps = 16/304 (5%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + + Y + W P EV + D A + + LT E+ + + NL +S+ Sbjct: 37 PFVQKWYEKGLSQFWRPEEVDITKDKADYAT---LTPAEKRIYESNLKRQTMLDSIQGAA 93 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 A S PE + +L +EA+HS ++ +I+ + D G +F+ +V I A Sbjct: 94 PFEAFGPWASTPEMQFAVLEWTRQEAIHSLSYTHILRNTVNDPGIVFDHVLDVAEIVDCA 153 Query: 160 NWALQYTQT--------LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + + ++ +FT + EG+ FY FA + Sbjct: 154 HQISTHYDDMVRYSGMRMAGRAFTREDIMNAKRAFWRALFAANTLEGIRFYVSFACSWAF 213 Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP--HLWTKEFQQKSRTMLHEA 268 + KM G A+ + I RDE HL ++N++ +P + +E + + M + Sbjct: 214 TQFQKKMEGNAKIIRQIARDEQDHLILTQTLLNRLPGMDPDFEIIREELRGEMTQMFLDV 273 Query: 269 TLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEV 326 E +A G +GLNA + ++ R IG P E P PW++E Sbjct: 274 GNQEKQWADYLFQDGSMLGLNAKILHHMVDWLLTHRMGAIGHPYPGEPRKECPVPWINEW 333 Query: 327 IDLK 330 ++ K Sbjct: 334 LNNK 337 >gi|257373022|ref|YP_003175796.1| ribonucleotide reductase [Halomicrobium mukohataei DSM 12286] gi|257167746|gb|ACV49438.1| ribonucleotide reductase [Halomicrobium mukohataei DSM 12286] Length = 336 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 141/325 (43%), Gaps = 18/325 (5%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S+ QL P +Y E + N++W+ TE D+ +K T E+ +IKR + Sbjct: 17 SERTQLKPYEYPDVLEYKDAIRNSYWVHTEFNFSGDVQDFKVNT--TPAEKAVIKRTMLA 74 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 A E IY + E + A E H + +++ LG+ E F Sbjct: 75 IAQIEV-QVKTFWADIYDEMPKAEVGNVGMTFAESEVRHMDAYSHLLDILGITED--FEE 131 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 +VP+I + ++ +Y D QE++ L +F E + ++ F + Sbjct: 132 VTDVPAIEERIDYLDEY--------LEKSESDDTQEYVMSLLLFSTFVEHVSLFSQFLIM 183 Query: 209 LSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 S + K GIA + ++E +H FG++++ I+ ENP L+ ++F+++ + + Sbjct: 184 TSFDKHEKKFKGIANAVEATSKEEQIHGLFGVELVETIREENPDLFDEDFEEEVQAACQQ 243 Query: 268 ATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WM 323 A E+ +G + + +++ N+ +G+EP+F+ E+ W Sbjct: 244 AFEAEMKILDWIFGEGELEFLPRAHVDAFLRDRFNQSLENVGVEPIFEPDEDLLEETRWF 303 Query: 324 SEVIDLKKEKNFFETRVTEYQQGAE 348 E I + K+ +FF R T Y + A+ Sbjct: 304 DEDIMMTKDNDFFSKRSTTYNKHAQ 328 >gi|73663294|ref|YP_302075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495809|dbj|BAE19130.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 322 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 125/331 (37%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LTD E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDPEKEAFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + I H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + K++ + L K+A V V E F Sbjct: 113 NYLLDKWVIEEPHLKYKSDKIINNYHKLWG-------KEASIYDQYIARVSSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF L L KM E + I+ DES+H F ++ E + Q+ Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGMDAQSLRNELSESEKLQADQEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L + E+AY H + A Y+++ N+ +G +P F+ E NP Sbjct: 226 YKLLDDLYKNEVAYTHSLYDDIGL---AEDVLNYVRYNGNKALSNLGFDPYFEEREFNPI 282 Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYTLALNVE 311 >gi|116493227|ref|YP_804962.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus pentosaceus ATCC 25745] gi|116103377|gb|ABJ68520.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Pediococcus pentosaceus ATCC 25745] Length = 317 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 62/303 (20%), Positives = 113/303 (37%), Gaps = 26/303 (8%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + W+ T +P+ +DL+ W+ L +D + ++ G ++L + + + A+ Sbjct: 21 WEKLTEQFWLDTRIPISNDLSDWR---ELDEDHKWVVGHVFGGLTLLDTLQSQDGMAALR 77 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163 + + P L F E+VH+ ++ I +L E+F + K Sbjct: 78 KDIRTPHETAVLNNIQFMESVHAKSYSSIFETLNTPSEIDEIFAWSDSEEFLQNKTKRIY 137 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + D+ L+ V E FY+GF L N++ +AE Sbjct: 138 ELYHD-------------DEHPLKKKIS-SVFLETFLFYSGFFTPLYYLGHNQLNNVAEI 183 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + I+RDES+H + E +E + L++ E Y H + Sbjct: 184 IKLILRDESVHGTYIGYKFQLGLKELGENEQQEIKDWMYNFLYDLYDNEEKYVHTLYDQ- 242 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340 VG + ++ AN+ +G +PLF TE NP M+ + +FF Sbjct: 243 -VGWT-DEVLTFTRYNANKALMNLGQDPLFPDTEADVNPIV-MNGISTGTSNHDFFSQVG 299 Query: 341 TEY 343 Y Sbjct: 300 NGY 302 >gi|15672956|ref|NP_267130.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus lactis subsp. lactis Il1403] gi|12723917|gb|AAK05072.1|AE006332_1 ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis subsp. lactis Il1403] gi|326406518|gb|ADZ63589.1| ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis subsp. lactis CV56] Length = 325 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 121/319 (37%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D N + + WEK + W+ T VP+ +DL W+ L ER + Sbjct: 17 DWNSIEDSIDKYTWEKL---TSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGL 70 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L + + + P+ F E+VH+ ++ I ++L + ELFN Sbjct: 71 TLLDTLQSVDGAEVLKHDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFN 130 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + +GT + V V E FY+GF Sbjct: 131 WVDTNVYMQTKAE--------IINKIYESGTPLQKK-------VASVFLETCLFYSGFYT 175 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NKM+ AE + I+RDES+H + E EF+ +L++ Sbjct: 176 PLRYLGNNKMINSAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDEQGEFRDWMYELLYQ 235 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y+H K VG ++++ AN+ +G +PLF T NP M+ Sbjct: 236 LYENEEKYSHLLYDK--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTAADVNPVV-MN 291 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 292 GISTSSSNHDFFSQVGNSY 310 >gi|326800312|ref|YP_004318131.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21] gi|326551076|gb|ADZ79461.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21] Length = 327 Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats. Identities = 69/309 (22%), Positives = 128/309 (41%), Gaps = 19/309 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE D+ +WK LT + + K+ LG ++L ++ + I Sbjct: 20 FWEQNIRQFWIDTEYIPSKDIDVWK---KLTPEMQETYKKALGGLTLLDTLQSHTGMPKI 76 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + L EA+H+ ++ I T++ ELF ++ + KA Sbjct: 77 LDHIDGLQSKAVLSYMCMMEAIHAKSYSTIFTTVASTPEINELFEWVQDNKYLQFKAATI 136 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 QY ++L K E L V+ E FY+GF L L +MV A+ Sbjct: 137 DQYYRSLDK-------KKVSNEELYMSLAASVLLESFLFYSGFFIPLWLAGQGQMVASAD 189 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I+ DES+H F + I + +E ++K +L E+ Y E Sbjct: 190 IIKKIVADESIHGVFVGLLAQDIFRKLS--NQEEVKKKVVDLLMLLYENELKYTEEIYTD 247 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + ++Y+++ AN+ +G E LF+ E NP ++ + + +FF + T Sbjct: 248 VGLTA---EVKEYVRYNANKALMNLGFEELFEVKEVNPIV-LNGLNLETTQHDFFSKKST 303 Query: 342 EYQQGAELK 350 Y++ ++ Sbjct: 304 NYEKATQIS 312 >gi|256848140|ref|ZP_05553584.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus coleohominis 101-4-CHN] gi|256715200|gb|EEU30177.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus coleohominis 101-4-CHN] Length = 333 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 120/324 (37%), Gaps = 28/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L D + + G Sbjct: 10 NWNEVSDMIDKATWEKL---TEQFWLDTRIPVSNDLDDWR---ELDTDHQWTVGHVFGGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 ++L + + A+ + L F E+VH+ ++ I ++L + E+F+ Sbjct: 64 TLLDTLQSQAGLTALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIREIFD 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA D + L+ V E FY+GF Sbjct: 124 WSDSEEYLQNKAVKIGNIY------------LDESVDPLKKKV-ANVFLETFLFYSGFYT 170 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + + ++ + L+E Sbjct: 171 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGMRQLTEKQQQDMKDWMYNFLYE 230 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y H + +G ++++ AN+ +G +PLF T NP M+ Sbjct: 231 LYDNEGNYTH--LLYDQIGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 286 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348 + +FF Y+ GA Sbjct: 287 GISTTTSNHDFFSQVGNGYRLGAV 310 >gi|32491358|ref|NP_871612.1| ribonucleotide-diphosphate reductase subunit beta [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166565|dbj|BAC24755.1| nrdF [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 324 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 56/322 (17%), Positives = 115/322 (35%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P ++P+ +D+ WK L+ +E+ + R Sbjct: 15 NWNRIEDEKDLEVWNH---VTTNFWLPEKIPLSNDIQSWK---MLSKEEKKLTIRIFTGL 68 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L +I + + F EAVH+ ++ I ++L + + Sbjct: 69 TLLDTLQNIIGAPSIMMDAKTMHEKAVISNIGFMEAVHARSYSSIFSTLCSTTEVDSAYF 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + + K N + ++ L+ V E FY+GF Sbjct: 129 WSEKNKFLQNKVNIISKIY--------------LEKNSLKKKI-ASVFLESFLFYSGFYL 173 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ ++ + I+RDE++H + + I K + + +L++ Sbjct: 174 PMFYSSRGKLTNTSDLIRLIIRDEAVHGYYIGYKFQKDLISLNEKEKKNIKDFAFNLLYK 233 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 EI Y++ N ++ + AN+ +G E F E NP + Sbjct: 234 LYENEINYSYSLYKDIIPIKN---IISFLNYNANKSLMNLGYEQYFPDDESLVNPDILSA 290 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + + +FF + Y G Sbjct: 291 LTPNSNENHDFFSGSGSSYVMG 312 >gi|10834911|ref|NP_066872.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 3] gi|5102912|dbj|BAA78729.1| UL40 protein [Marek's disease virus serotype 2 MDV2] gi|5689312|dbj|BAA82936.1| UL40 product homolog [Marek's disease virus serotype 2 MDV2] gi|10800005|dbj|BAB16550.1| UL40 protein [Gallid herpesvirus 3] Length = 353 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 63/309 (20%), Positives = 114/309 (36%), Gaps = 27/309 (8%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W TE + +DL L+++E+ + F ++++ LV N Sbjct: 61 PDIGHLRALSIMNRWTETEFVVAEDLGD---VAKLSEEEKNFYRFLFTFLSAADDLVNLN 117 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSI 155 I + + Y Q EAVHS + I L ++ Y E P I Sbjct: 118 I-DNLLGLFEQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSSARAKYVQSALESPVI 176 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 +K W + + + + ++ ++ EG++F FA+I L N Sbjct: 177 QSKLEWLDRRI--------------LECTSIPEKYILMILTEGIFFSASFARIAYLRTNN 222 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 V + I RDE++H+ + N K + + + EA LE A+ Sbjct: 223 LFVVTCQINNLISRDEAIHVEASCCIFKNYIAGN-----KPSTARIQALFSEAVDLECAF 277 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 P+ L+ S Y+++ A+R + + P++ + ++ NF Sbjct: 278 LRAAAPRDSRLLDIGSICSYVRYSADRLLRMLDVPPIYGEPSPAADFPLSLMSASNNTNF 337 Query: 336 FETRVTEYQ 344 FE R T Y Sbjct: 338 FERRSTAYS 346 >gi|255018022|ref|ZP_05290148.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL F2-515] Length = 267 Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 15/266 (5%) Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DE 142 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 2 IIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQ 60 Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 +F + R P+I + + + + E L + + EG+ FY Sbjct: 61 NRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFY 112 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262 +GFA +L R NKM G + +I RDE H F +VI I ENP L T+E + + Sbjct: 113 SGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTH 172 Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFP 321 A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N Sbjct: 173 EAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMT 231 Query: 322 WMSEVID--LKKEKNFFETRVTEYQQ 345 W+ D + + +FFE R + Y++ Sbjct: 232 WIKAYADNFTETKTDFFEMRNSSYKK 257 >gi|116333244|ref|YP_794771.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus brevis ATCC 367] gi|116098591|gb|ABJ63740.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactobacillus brevis ATCC 367] Length = 331 Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 59/302 (19%), Positives = 111/302 (36%), Gaps = 24/302 (7%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + W+ T +P+ +DL W++ L D + ++ G ++L + + + A+ Sbjct: 24 WEKLTEQFWLDTRIPVSNDLDDWRT---LDTDHQWVVGHVFGGLTLLDTLQSQDGMAALR 80 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163 R + P L F E+VH+ ++ I ++L + E+F + K Sbjct: 81 RDIRTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFQWSDSEEFLQNKTKRIY 140 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 D+ L+ V E FY+GF L NK+ +AE Sbjct: 141 DLYHD-------------DEHPLKKKIS-SVFLETFLFYSGFFTPLYYLGHNKLNNVAEI 186 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + I+RDES+H + E ++ + L++ E Y H + Sbjct: 187 IKLILRDESVHGTYIGYKFQLGMKELTDAEQQQMKDWMYDFLYQLYDNEEKYTHTLYDQ- 245 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFFETRVT 341 +G ++++ AN+ +G +PLF T M+ + +FF Sbjct: 246 -IGWT-EKVLTFIRYNANKALMNLGQDPLFPDTAEDVDPVVMNGISTSTANHDFFSQVGN 303 Query: 342 EY 343 Y Sbjct: 304 GY 305 >gi|257125877|ref|YP_003163991.1| ribonucleoside-diphosphate reductase [Leptotrichia buccalis C-1013-b] gi|257049816|gb|ACV39000.1| Ribonucleoside-diphosphate reductase [Leptotrichia buccalis C-1013-b] Length = 335 Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 63/308 (20%), Positives = 127/308 (41%), Gaps = 17/308 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE D+ W N L +L LG ++L ++ + I Sbjct: 22 FWEQNLKQFWIDTEYIPSKDIDSW---NSLEPAMKLAYLHVLGGLTLLDTLQSHTGMPKI 78 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + R L E +H+ ++ I T++ E F +E P + KAN Sbjct: 79 IDHIESLQNRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFRWVQENPHLQYKANKI 138 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y Q +++P +A + + V E FY+GF L L +MV + Sbjct: 139 DTYYQKMNNP-------EASKRDIAMALAASVYLETYLFYSGFFLPLWLAGQGEMVASCD 191 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I+ DES+H F + ++ + + + + ++++ E Y E Sbjct: 192 IIKKIIADESIHGVFVGLLFQELYNSFSEEEKADMRAELKKLMYDLYENETRYTDEIYGD 251 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVT 341 + N ++Y+++ AN+ +G E F+ +N P + ++++ + +FF + T Sbjct: 252 LGLTGN---VKEYIRYNANKALMNLGFEEEFEV-KNVNPIVLNGLNVETTQHDFFSKKST 307 Query: 342 EYQQGAEL 349 Y++ E+ Sbjct: 308 NYEKALEV 315 >gi|256422447|ref|YP_003123100.1| ribonucleotide reductase [Chitinophaga pinensis DSM 2588] gi|256037355|gb|ACU60899.1| ribonucleotide reductase [Chitinophaga pinensis DSM 2588] Length = 324 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 125/320 (39%), Gaps = 18/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 Q P +Y + + + W+ EV D + S L ER ++ +L A Sbjct: 7 RLQYKPFEYPEVLQFTEAINKSFWVHAEVDFTADTQDFHS--HLNPAERTAVRNSLLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V + +Y HL PE A E HS + ++ LG + F Sbjct: 65 QIEVAV-KSFWGNLYNHLPKPEMNGLGSTFAECEFRHSEAYSRLVEVLGYN--SQFEKLV 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 EVP I + + S + + +E+ L +F ++ E + ++ FA ILS Sbjct: 122 EVPVIRQRIEYL--------SDALSNAKSTDTREYTISLILFSILIENVSLFSQFAIILS 173 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 R M ++ + DE +H N GI +IN+I+ E P ++ + + ++ E+ Sbjct: 174 FTRFKGLMKNVSNIIAWTSVDEQIHANAGIYLINKIREEYPEMFDEATITRVSNLVKESI 233 Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325 +E +G ++ +M++ A+ +I L LF + P W E Sbjct: 234 EVESNILDWIFSEGKIDTVSKEHLVNFMKYRADDSLKKINLPALFNISTEDNKPMLWFEE 293 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 + +FF R +Y + Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313 >gi|251792578|ref|YP_003007304.1| ribonucleoside-diphosphate reductase subunit beta [Aggregatibacter aphrophilus NJ8700] gi|247533971|gb|ACS97217.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter aphrophilus NJ8700] Length = 329 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 132/320 (41%), Gaps = 19/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 ++ P +Y E + +++W+ TE D+ +++ ++D ER +I + + + Sbjct: 13 RFEIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDFRT--HISDVERAVITKTMLAIS 70 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y + PE E H + +++ LGL+ E+F R Sbjct: 71 QIEVSV-KRFWGNLYNYFPKPEIEDVGGSFLESEIRHKDAYSFLLEKLGLN--EMFLNVR 127 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + +I A+ + +F + Q+F+ L +F + E + ++ F ++S Sbjct: 128 QYKAIMARIEYM---------EAFMRRKDVSQQDFVLSLIMFSLFVEHISLFSQFVIMMS 178 Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + N GI+ + ++E +H FGI + + ++ E P L+T F + + + +A Sbjct: 179 FNKHKNLFKGISNAIEATSKEEEIHGRFGITLYSILREEQPELFTDAFFTELKELADQAF 238 Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325 E + G + + + E Y+ N +GLEP + W Sbjct: 239 TAEKEILNWIFEDGELDFLSKATVENYIANRYNNSLQALGLEPAYNINPEQLKETEWFDI 298 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 299 EILSTKETDFFNKRSTDYSK 318 >gi|315658919|ref|ZP_07911786.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus lugdunensis M23590] gi|315496043|gb|EFU84371.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus lugdunensis M23590] Length = 322 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 127/331 (38%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LTDDER KR Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDDERNTFKR 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + I H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + KA+ ++ L K+A V V E F Sbjct: 113 NYLLDTWVIEEPHLKYKADKIIENYHKLWG-------KEASIYDQYIARVSSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF L L KM E + I+ DES+H F ++ E ++ ++ Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGIDAQSLRNELSENEKQQADKEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L + E++Y H + Y+++ N+ +G +P F+ + NP Sbjct: 226 YVLLEDLYSNEVSYTHMLYDDIGL---TEDVLNYVKYNGNKALSNLGFDPYFEEKDFNPI 282 Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYTLALNVE 311 >gi|260889741|ref|ZP_05901004.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia hofstadii F0254] gi|260860347|gb|EEX74847.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia hofstadii F0254] Length = 335 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 62/308 (20%), Positives = 126/308 (40%), Gaps = 17/308 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE D+ W N L +L LG ++L ++ + I Sbjct: 23 FWEQNLKQFWIDTEYIPSKDIDSW---NSLEPAMKLAYLHVLGGLTLLDTLQSHTGMPKI 79 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + R L E +H+ ++ I T++ E F +E P + KAN Sbjct: 80 IDHIESLQNRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFRWVQENPHLQYKANKI 139 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y Q +++P +A + + V E FY+GF L L +MV + Sbjct: 140 DAYYQKMNNP-------EASKREIAMALAASVYLETYLFYSGFFLPLWLAGQGEMVASCD 192 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I+ DES+H F + ++ + + + + ++++ E Y E Sbjct: 193 IIKKIIADESIHGVFVGLLFQELYNSFSEEEKADMRAELKKLMYDLYENETRYTDEIYGD 252 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVT 341 + ++Y+++ AN+ +G E F+ +N P + ++++ + +FF + T Sbjct: 253 LGL---TGDVKEYIRYNANKALMNLGFEEEFEV-KNVNPIVLNGLNVETTQHDFFSKKST 308 Query: 342 EYQQGAEL 349 Y++ E+ Sbjct: 309 NYEKALEV 316 >gi|289551411|ref|YP_003472315.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus lugdunensis HKU09-01] gi|289180942|gb|ADC88187.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus lugdunensis HKU09-01] Length = 322 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 127/331 (38%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LTDDER KR Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTDDERNTFKR 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + I H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYAFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + KA+ ++ L K+A V V E F Sbjct: 113 NYLLDTWVIEEPHLKYKADKIIENYHKLWG-------KEASIYDQYIARVSSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF L L KM E + I+ DES+H F ++ E ++ ++ Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGIDAQSLRNELSENEKQQADKEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L + E++Y H + Y+++ N+ +G +P F+ + NP Sbjct: 226 YVLLEDLYSNEVSYTHMLYDDIGL---TEDVLNYVKYNGNKALSNLGFDPYFEEKDFNPI 282 Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYTLALNVE 311 >gi|270339459|ref|YP_003331539.1| ribonucleotide reductase subunit 2 [Felid herpesvirus 1] gi|254940175|gb|ACT88318.1| ribonucleotide reductase subunit 2 [Felid herpesvirus 1] Length = 331 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 62/309 (20%), Positives = 114/309 (36%), Gaps = 26/309 (8%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ T++P+ DD+ L++ E + F ++++ LV N Sbjct: 38 PDINMLRSLSIANRWLETDLPIGDDIKD---VTTLSESELDFYRFLFTFLSAADDLVNLN 94 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSI 155 + + + + Y + Q E VHS + I L + E Y P + Sbjct: 95 L-GNLSELFTQKDILHYYIEQECIEVVHSRVYSAIQLLLFKCDAEARTAYVDSMITKPEL 153 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K W T+ + E + + ++ ++ EG++F FA I L N Sbjct: 154 ARKVEWL--------------RTRIGECESIAEKYILMILIEGIFFVASFAAIAYLRTHN 199 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 + + I RDE++H + N K ++ ++ EA LE + Sbjct: 200 IFIVTCQTNDLISRDEAIHTTASCCIYNNYLPAQI----KPSTERIHSLFREAVELECEF 255 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 P+ LN Y+++ A+R I + P+F + + ++K NF Sbjct: 256 ISTCAPRCSNLLNVADICNYVRYSADRLLGIIKVAPIFNVPPPHPDFPLAFMVIEKHTNF 315 Query: 336 FETRVTEYQ 344 FE T Y Sbjct: 316 FERHSTTYS 324 >gi|293374706|ref|ZP_06621014.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sanguinis PC909] gi|325840602|ref|ZP_08167083.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sp. HGF1] gi|292646620|gb|EFF64622.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sanguinis PC909] gi|325490251|gb|EGC92584.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter sp. HGF1] Length = 321 Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats. Identities = 74/317 (23%), Positives = 130/317 (41%), Gaps = 24/317 (7%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 Y + + YL W+P E+P+ +D ++W + L ++ +L +R LG ++ + Sbjct: 15 YQFYDDLYLKQTEQFWLPEEIPVSEDKSIWDT---LDENIKLTYERILGGLTLLDTEQST 71 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSIT 156 + I N + L A E++H+ ++ I +L E ELFN E + Sbjct: 72 -GIQKIAEKSDNLFIKSILALFAGFESIHARSYSTIFQTLCTTERIEELFNWVEETKPLQ 130 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 K + ++ + AD+E L V + EG+ FY+GF L L K Sbjct: 131 EKVDQIMRSYYGV-----------ADKESLFMSMVGCLCLEGICFYSGFYLPLWLAGQGK 179 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 MV E I+RDE LH Q+ E + +Q++ M+ E +E+ Y+ Sbjct: 180 MVNSGEIINLILRDEKLHTVGVGFFAQQLLSEFDESIQAKLKQQAVEMMQEIYEVEVEYS 239 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEK 333 + Y+Q+ N + L PLF E NP ++ + K Sbjct: 240 KVLYENLDMI---DDVVSYIQYNVNYALQCLNLNPLFDIVESDINPIV-LNGISTETKNH 295 Query: 334 NFFETRVTEYQQGAELK 350 +FF T+ Y + +++ Sbjct: 296 DFFSTKGNGYIKTTKVE 312 >gi|295134784|ref|YP_003585460.1| ribonucleotide reductase [Zunongwangia profunda SM-A87] gi|294982799|gb|ADF53264.1| ribonucleotide reductase [Zunongwangia profunda SM-A87] Length = 324 Score = 189 bits (479), Expect = 8e-46, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 131/320 (40%), Gaps = 18/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + + + W+ +EV D+ + S LT E+ ++K++L A Sbjct: 7 RLNYKPFEYPGVLDFTDAINQSFWVHSEVDFTADVQDFHS--HLTTGEKDVVKKSLLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V + +Y+HL PE A E HS + ++ LG + F Sbjct: 65 QIEVAV-KSFWGDLYKHLPKPEFNGLGSTFAECEFRHSQAYSRLLEVLGYNNE--FAKVV 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 EVP+I + + + + + ++++ L +F ++ E + ++ FA +LS Sbjct: 122 EVPAIKKRIAYLTE--------ALEHTKAEDPKDYVSSLILFSILIENVSLFSQFAIVLS 173 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 R M ++ + DE +H N GI +INQI+ E P + +E +K ++ + Sbjct: 174 FNRFKGVMKNVSNIIAWTSVDEQIHANAGIYIINQIREEYPDYFNEEMTRKLTDVVTRSI 233 Query: 270 LLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325 +E G + +N + +M+F + IGL + T P W E Sbjct: 234 EVEEEILDWIFENGQLENINKKNLMDFMKFRLDDSLKSIGLPKQYNITAAEYQPMLWFEE 293 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 + +FF R +Y + Sbjct: 294 EVFANSLDDFFARRPVDYTK 313 >gi|70727160|ref|YP_254076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus haemolyticus JCSC1435] gi|68447886|dbj|BAE05470.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus haemolyticus JCSC1435] Length = 322 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 127/331 (38%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LT+DE+ KR Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKR 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + I H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + K++ ++ L K+A V V E F Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIIENYHKLWG-------KEASIYDQYIARVSSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF L L KM E + I+ DES+H F ++ E ++ ++ Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSENEKQKADKEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L + E++Y H + Y+Q+ N+ +G EP F+ E NP Sbjct: 226 YKLLEDLYANEVSYTHMLYDDIGLS---EDVLNYVQYNGNKALSNLGFEPYFEEKEFNPI 282 Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYTLALNVE 311 >gi|300934659|ref|ZP_07149915.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium resistens DSM 45100] Length = 332 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 62/354 (17%), Positives = 123/354 (34%), Gaps = 34/354 (9%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 + E K R ++ E + N W+P +VP+ +DL W Sbjct: 1 MTIAESVTPPKAKYNPRVRIRPINWNKVQDDKDLEVWQRLTANFWLPEKVPLSNDLKDW- 59 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 NGL+D ER + R +++ A ++ + AF ++VH+ Sbjct: 60 --NGLSDIERTLTMRVFTGLTLLDTMQATVGEISQIQDAQTEHEEAVYTNIAFMQSVHAR 117 Query: 130 TFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 ++ + ++L + + + L++ E Sbjct: 118 SYSSVFSTLANTPSINAAYEWAVNNDVLQQRCRSVLEHY---------------FGEDPL 162 Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 V + + Y GF L + A+ + I+RD+++H + + + Sbjct: 163 KRKVSATLLSSVLLYAGFYLPLHFSTRGVLTNTADMIRLILRDKAVHGYYSGYKFQR-GL 221 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQ 306 EN T E + + +L + LE+ Y+ E P G + +++++ AN+ Sbjct: 222 ENHPERTAELSEFTHALLEKLFELEVLYSAELYEPLGLMP----DVVKFVKYNANKALMN 277 Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 +G P F E +P + + +FF + Y G A+ WD Sbjct: 278 LGYHPHFAAEETDVSPEILSALTPGADENHDFFSGSGSSYIMGKAEETADTDWD 331 >gi|297567587|ref|YP_003686558.1| hypothetical protein Mesil_3232 [Meiothermus silvanus DSM 9946] gi|297567764|ref|YP_003686735.1| hypothetical protein Mesil_3416 [Meiothermus silvanus DSM 9946] gi|296852036|gb|ADH65050.1| hypothetical protein Mesil_3232 [Meiothermus silvanus DSM 9946] gi|296852213|gb|ADH65227.1| hypothetical protein Mesil_3416 [Meiothermus silvanus DSM 9946] Length = 323 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 59/306 (19%), Positives = 110/306 (35%), Gaps = 20/306 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ E+P+ DD W + L +ER ++ L ++L + + Sbjct: 17 FWDQNVRQFWVDEEIPLADDKLTWTT---LAPEERETYEKVLVGLTLLDTLQGGVGMPLL 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 + + + + + L E +H+ ++ I ++L LF P + AK Sbjct: 74 VQTMESAQVKAVLSFMGAMEQMHAKSYSLIFSTLSPLPRIETLFRWAEGHPLLQAKVARV 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + + + L V+ E FY+GF L L ++V E Sbjct: 134 EGRYRGVFAGDAG----------LYLALANSVLLESYLFYSGFYYPLLLAGEGRLVNSGE 183 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 I+RDE++H + + Q+ P + R L + + LE AY E Sbjct: 184 IISLILRDEAIHGVYVGMLAQQVYARLPEGEQSRLRTALREDLEKLSALEEAYTEELYA- 242 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDL-KKEKNFFETRV 340 ++ ++ A++ +G P F E P + I L K +FF T+ Sbjct: 243 --PIGRVEEVRRFCRYNADKALMNLGQPPYFGVRAEEVNPVVLAGISLRTKNHDFFSTKG 300 Query: 341 TEYQQG 346 Y + Sbjct: 301 NGYVKA 306 >gi|322515075|ref|ZP_08068083.1| ribonucleoside-diphosphate reductase beta subunit [Actinobacillus ureae ATCC 25976] gi|322118955|gb|EFX91132.1| ribonucleoside-diphosphate reductase beta subunit [Actinobacillus ureae ATCC 25976] Length = 326 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 131/320 (40%), Gaps = 19/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y E + +++W+ TE D+ ++ + D ER ++ R + + Sbjct: 10 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAMLAIS 67 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +YR+ PE A E H + +++ LGL+ E+F+ + Sbjct: 68 QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 124 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 ++ + + + SF EF+ L +F + E + + F ++S Sbjct: 125 DIEPLMNRIRYM---------ESFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 175 Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + N GI+ + ++E +H FGI + ++ E+ L+T EF ++ +T+ +A Sbjct: 176 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEELKTLSTQAF 235 Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325 E +G + + + E Y++ N +GLEP + W Sbjct: 236 EAECGILDWIFEEGDLSFISREAVENYIRSRYNNSLMTLGLEPPYDVNPELLKETEWFDI 295 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 296 EILSTKETDFFNKRSTDYSK 315 >gi|257464834|ref|ZP_05629205.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus minor 202] gi|257450494|gb|EEV24537.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus minor 202] Length = 326 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 131/320 (40%), Gaps = 19/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y E + +++W+ TE D+ +++ +TD ER ++ R + + Sbjct: 10 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--TITDHERHVLTRAMLAIS 67 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +YR+ PE A E H + +++ LGL+ E+F+ + Sbjct: 68 QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 124 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 ++ + + + SF EF+ L +F + E + + F ++S Sbjct: 125 DIEPLMNRIRYM---------ESFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 175 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + N GI+ + ++E +H FGI + ++ E+ L+T F ++ +T+ ++A Sbjct: 176 FNKYKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPAFFEELQTLANQAF 235 Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325 E +G + + + Y++ N +GLEP W Sbjct: 236 EAEKGILDWIFEEGDLSFISKETVLNYIKSRYNNSLVTLGLEPPHNINPELLKETAWFDI 295 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 296 EILSTKETDFFNKRSTDYSK 315 >gi|116511803|ref|YP_809019.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus lactis subsp. cremoris SK11] gi|125624347|ref|YP_001032830.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus lactis subsp. cremoris MG1363] gi|116107457|gb|ABJ72597.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactococcus lactis subsp. cremoris SK11] gi|124493155|emb|CAL98119.1| ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis subsp. cremoris MG1363] gi|300071131|gb|ADJ60531.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus lactis subsp. cremoris NZ9000] Length = 325 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 121/319 (37%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D N + + WEK + W+ T VP+ +DL W+ L ER + Sbjct: 17 DWNSIEDSIDKYTWEKL---TSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGL 70 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L + + + P+ F E+VH+ ++ I ++L + ELFN Sbjct: 71 TLLDTLQSVDGAEVLKHDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFN 130 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + + + +GT + V V E FY+GF Sbjct: 131 WVDTNVYMQTKAE--------IINKIYESGTALQKK-------VASVFLETCLFYSGFYT 175 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NKM+ AE + I+RDES+H + E EF+ +L++ Sbjct: 176 PLLYLGNNKMINSAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDEQSEFRDWMYELLYK 235 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y+H K VG ++++ AN+ +G +PLF T NP M+ Sbjct: 236 LYENEENYSHLLYDK--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTAADVNPVV-MN 291 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 292 GISTSSSNHDFFSQVGNSY 310 >gi|228475302|ref|ZP_04060026.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis SK119] gi|228270678|gb|EEK12092.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis SK119] Length = 322 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 125/331 (37%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LT+DE+ KR Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKR 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + I H ++ + E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMQMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + K++ + L K+A V V E F Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIISNYHKLWG-------KEASIFDQYMARVSSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF L L KM E + I+ DES+H F ++ E ++ ++ Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSENEKQKADKEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L E E++Y H + Y+Q+ N+ +G EP F+ E NP Sbjct: 226 YKLLEELYKNEVSYTHMLYDDIGL---TEDVLNYVQYNGNKALSNLGFEPYFEEKEFNPI 282 Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTSTKNHDFFSVKGDGYTLALNVE 311 >gi|3183695|emb|CAA07027.1| ribonucleotide reductase small subunit [Felid herpesvirus 1] Length = 331 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 62/309 (20%), Positives = 114/309 (36%), Gaps = 26/309 (8%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W+ T++P+ DD+ L++ E + F ++++ LV N Sbjct: 38 PDINMLRSLSIANRWLETDLPIGDDIKD---ITTLSESELDFYRFLFTFLSAADDLVNLN 94 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSI 155 + + + + Y + Q E VHS + I L + E Y P + Sbjct: 95 L-GNLSELFTQKDILHYYIEQECIEVVHSRVYSAIQLLLFKCDAEARTAYVDSMITKPEL 153 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K W T+ + E + + ++ ++ EG++F FA I L N Sbjct: 154 ARKVEWL--------------RTRIGECESIAEKYILMILIEGIFFVASFAAIAYLRTHN 199 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 + + I RDE++H + N K ++ ++ EA LE + Sbjct: 200 IFIVTCQTNDLISRDEAIHTTASCCIYNNYLPAQI----KPSTERIHSLFREAVELECEF 255 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 P+ LN Y+++ A+R I + P+F + + ++K NF Sbjct: 256 ISTCAPRCSNLLNVADICNYVRYSADRLLGIIKVAPIFNVPPPHPNFPLAFMVIEKHTNF 315 Query: 336 FETRVTEYQ 344 FE T Y Sbjct: 316 FEKHSTTYS 324 >gi|294877483|ref|XP_002768004.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus ATCC 50983] gi|239870142|gb|EER00722.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus ATCC 50983] Length = 247 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 58/233 (24%), Positives = 105/233 (45%), Gaps = 29/233 (12%) Query: 109 SNPECRQYLLRQAFEEAVHSHT-FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 ++ E + Y EA+++ ++ +F +PS+ KA WAL + Sbjct: 19 TSTETKHY------REALYATAEHSNTFIEDAQEKERIFEAIETIPSVQHKAEWALAWIN 72 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 D + V Y EG+ F F + L + M G+ + I Sbjct: 73 --------------DDNCFAERLVAYACVEGILFSGSFCALFWLKKRGLMPGLTFSNELI 118 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 RDE LH +FG + N +K +T+ +++ ++ A +E + + +P G +G+ Sbjct: 119 SRDEGLHTDFGCLLYNMLK------FTRLPEERVEDIVRSAVNVEREFITDALPVGLIGM 172 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 NA +Y++F+A+R +G ++ + NPF WM+ +I L+ + NFFE RV Sbjct: 173 NAELMGRYIEFVADRLLVALGYAKIYN-SANPFDWMT-MISLQGKTNFFEKRV 223 >gi|262038309|ref|ZP_06011695.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia goodfellowii F0264] gi|261747660|gb|EEY35113.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia goodfellowii F0264] Length = 334 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 65/308 (21%), Positives = 127/308 (41%), Gaps = 17/308 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE D+ W S L + +L + LG ++L ++ + I Sbjct: 22 FWEQNLKQFWIDTEYIPSKDIDSWHS---LEPEMKLAYLQVLGGLTLLDTLQSHTGMPKI 78 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + +CR L E +H+ ++ I T++ E FN +E + KAN Sbjct: 79 IDHIESLQCRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFNWVQENEHLQYKANKI 138 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y Q +++P A + + V E FY+GF L L +MV + Sbjct: 139 DYYYQKMNNP-------KATKREIYMALCASVYLETYLFYSGFFLPLWLAGQGEMVASCD 191 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I+ DES+H F + +I + +++ + ++H+ E Y E Sbjct: 192 IIKKIIADESIHGVFVGLLSQEIYATFSEEEKESVRKELKELMHDLYENEARYTDEVYGD 251 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + ++Y+++ AN+ +G E F+ + NP ++ + + +FF + T Sbjct: 252 VGLTA---DVKEYIRYNANKALMNLGFEEEFEVKDVNPIV-LNGLNVETTQHDFFSKKST 307 Query: 342 EYQQGAEL 349 Y++ E+ Sbjct: 308 NYEKALEV 315 >gi|261494146|ref|ZP_05990649.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310312|gb|EEY11512.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 325 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 68/320 (21%), Positives = 129/320 (40%), Gaps = 19/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y E + +++W+ TE D+ +++ + D ER ++ R + + Sbjct: 9 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--TINDHERHVLTRAMLAIS 66 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +YR+ PE A E H + +++ LGL+ E+F+ Sbjct: 67 QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIH 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E+ + + + SF EF+ L +F + E + + F ++S Sbjct: 124 EIEPLMNRIRYM---------ESFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMS 174 Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + N GI+ + ++E +H FGI + ++ E+ L+T EF + +T+ ++A Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAF 234 Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325 E +G + + E Y++ N +GLEP W Sbjct: 235 EAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLEPPHDIDPELLKETEWFDI 294 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 295 EILSTKETDFFNKRSTDYSK 314 >gi|53728876|ref|ZP_00348266.1| COG0208: Ribonucleotide reductase, beta subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207635|ref|YP_001052860.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus pleuropneumoniae L20] gi|165975603|ref|YP_001651196.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149418|ref|YP_001967943.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249851|ref|ZP_07336055.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251971|ref|ZP_07338142.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247133|ref|ZP_07529185.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249355|ref|ZP_07531349.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251676|ref|ZP_07533581.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253912|ref|ZP_07535764.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256172|ref|ZP_07537959.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258366|ref|ZP_07540107.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260605|ref|ZP_07542297.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262736|ref|ZP_07544363.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096427|gb|ABN73255.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875704|gb|ABY68752.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914549|gb|ACE60801.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649401|gb|EFL79586.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651418|gb|EFL81570.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306856382|gb|EFM88533.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858649|gb|EFM90711.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860873|gb|EFM92881.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863116|gb|EFM95058.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865353|gb|EFM97249.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867550|gb|EFM99397.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869682|gb|EFN01467.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871881|gb|EFN03598.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 325 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 129/320 (40%), Gaps = 19/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y E + +++W+ TE D+ ++ + D ER ++ R + + Sbjct: 9 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAMLAIS 66 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +YR+ PE A E H + +++ LGL+ E+F+ + Sbjct: 67 QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 ++ + + + SF EF+ L +F + E + + F ++S Sbjct: 124 DIEPLMNRIRYM---------ESFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 174 Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + N GI+ + ++E +H FGI + ++ E+ L+T EF + +T+ +A Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILREEHSELFTPEFFEDLKTLSSQAF 234 Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325 E +G + + E Y++ N +GLEP + W Sbjct: 235 EAECGILDWIFEEGDLSFISREEVENYIRSRYNNSLMTLGLEPPYDVNPELLKETEWFDI 294 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 295 EILSTKETDFFNKRSTDYSK 314 >gi|314936969|ref|ZP_07844316.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis subsp. hominis C80] gi|313655588|gb|EFS19333.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus hominis subsp. hominis C80] Length = 322 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 125/331 (37%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LT+DE+ KR Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKR 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + I H ++ + E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTTDLRKKAVYSFMQMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + K++ + L K+A V V E F Sbjct: 113 NYLLDTWVIEEPHLKYKSDKIISNYHKLWG-------KEASIFDQYMARVSSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF L L KM E + I+ DES+H F ++ E ++ ++ Sbjct: 166 YSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSENEKQKADKEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L E E++Y H + Y+Q+ N+ +G EP F+ E NP Sbjct: 226 YKLLEELYKNEVSYTHMLYDDIGL---TEDVLNYVQYNGNKALSNLGFEPYFEEKEFNPI 282 Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTSTKNHDFFSVKGDGYTLALNVE 311 >gi|240950330|ref|ZP_04754600.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus minor NM305] gi|240295141|gb|EER45960.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus minor NM305] Length = 326 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 130/320 (40%), Gaps = 19/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y E + +++W+ TE D+ +++ +TD ER ++ R + + Sbjct: 10 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--TITDHERHVLTRAMLAIS 67 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +YR+ PE A E H + +++ LGL+ E+F+ + Sbjct: 68 QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 124 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 ++ + + + SF EF+ L +F + E + + F ++S Sbjct: 125 DIEPLMNRIRYM---------ESFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 175 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + N GI+ + ++E +H FGI + ++ E+ L+T F ++ +T+ +A Sbjct: 176 FNKYKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPAFFEELQTLASQAF 235 Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325 E +G + + + Y++ N +GLEP W Sbjct: 236 EAEKGILDWIFEEGDLSFISKETVLNYIKSRYNNSLVTLGLEPPHDINPELLKETAWFDI 295 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 296 EILSTKETDFFNKRSTDYSK 315 >gi|307244959|ref|ZP_07527056.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854124|gb|EFM86332.1| Ribonucleoside-diphosphate reductase, beta subunit 1 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 325 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 129/320 (40%), Gaps = 19/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y E + +++W+ TE D+ ++ + D ER ++ R + + Sbjct: 9 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAMLAIS 66 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +YR+ PE A E H + +++ LGL+ E+F+ + Sbjct: 67 QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 ++ + + + SF EF+ L +F + E + + F ++S Sbjct: 124 DIEPLMNRIRYM---------ESFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 174 Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + N GI+ + ++E +H FGI + ++ E+ L+T EF + +T+ +A Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIVLYEILREEHSELFTPEFFEDLKTLSSQAF 234 Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325 E +G + + E Y++ N +GLEP + W Sbjct: 235 EAECGILDWIFEEGDLSFISREEVENYIRSRYNNSLMTLGLEPPYDVNPELLKETEWFDI 294 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 295 EILSTKETDFFNKRSTDYSK 314 >gi|222475861|ref|YP_002564382.1| ribonucleotide reductase [Halorubrum lacusprofundi ATCC 49239] gi|222454232|gb|ACM58496.1| ribonucleotide reductase [Halorubrum lacusprofundi ATCC 49239] Length = 336 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 68/325 (20%), Positives = 134/325 (41%), Gaps = 18/325 (5%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S+ QL P +Y + + N++W+ TE D+ +K T E+ +IKR + Sbjct: 17 SERTQLKPYEYNDFLDYKDAIRNSYWVHTEFNFSGDVQDFKVNT--TPAEKTVIKRTMLA 74 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 A E IY + E + A E H + +++ LG+ F Sbjct: 75 IAQIEV-QVKTFWSDIYEEMPKAEIGSVGMTFAESEVRHMDAYSHLLDVLGITGD--FEE 131 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 EVP++ + + G D + ++ + +F + E + ++ F + Sbjct: 132 VTEVPAVKDRIEYL--------DECLERGQSDDTKGYVMSILLFSMFVEHVSLFSQFLIM 183 Query: 209 LSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 S + K GIA + ++E +H FG+++++ I+ ENP L+ EF+ + R Sbjct: 184 TSFDKYEKKFKGIANAVEATSKEEQIHGLFGVELVDTIREENPGLFDDEFEAEIREACRR 243 Query: 268 ATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WM 323 A E+ +G + ++++ N+ +G+ P+F+ ++ W Sbjct: 244 AYEAEMGMLDWIFGEGELQFLPREYVNEFLKDRFNQSLENVGVYPMFETDDDLLDETRWF 303 Query: 324 SEVIDLKKEKNFFETRVTEYQQGAE 348 E I + K+ +FF R T Y + + Sbjct: 304 DEDIMMTKDNDFFSKRSTTYNKHTQ 328 >gi|224475873|ref|YP_002633479.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus carnosus subsp. carnosus TM300] gi|222420480|emb|CAL27294.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus carnosus subsp. carnosus TM300] Length = 324 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 68/331 (20%), Positives = 125/331 (37%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ LT +E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LTPEEQDTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + I H + + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTKDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + K++ + L + K+A V V E F Sbjct: 113 NYLLDTWVLEEPHLKFKSDKIVGNYHKLWA-------KEASVYDQYIARVSSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF L L +M E + I+ DES+H F ++ E + Q Sbjct: 166 YSGFYYPLYLAGQGRMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSENEKQRADQHM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L E E++Y H+ + A Y+++ N+ +G EP F+ E NP Sbjct: 226 YKLLEELYKNEVSYTHKLYDDIGL---AEDVLNYVRYNGNKALSNLGFEPYFEEREFNPI 282 Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTSTKNHDFFSVKGDGYTLALNVE 311 >gi|330718304|ref|ZP_08312904.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc fallax KCTC 3537] Length = 326 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 70/317 (22%), Positives = 125/317 (39%), Gaps = 26/317 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + WEK W+ T VP+ +DL W+ + +E+ ++ G Sbjct: 13 NWNNIEDELDKATWEKL---TQQFWLDTRVPISNDLRNWRDT---SAEEKKVLNLVFGGL 66 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 + ++L + + + + + N + L F E+VH+ ++ I +L D+ E+ ++ Sbjct: 67 TTLDTLQSQDGMAELKKDAVNQKEEAVLNNIQFMESVHAKSYSSIFETL-NDKAEIEAVF 125 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 A + LQY + + GT + V V E FY+GF L Sbjct: 126 E-----WADNDEYLQYKAQRINDIYHNGTPLQKK-------VASVFLETFLFYSGFYTPL 173 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NKM+ +AE + I+RDES+H + + E Q +L E Sbjct: 174 YFVGHNKMLNVAEIIKLIIRDESVHGTYIGYKFQIGFNQLSEDEQSELQSWMYDLLFELY 233 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326 E + HE + +G S ++++ AN+ +G EP+F NP M+ + Sbjct: 234 ENEEKFTHELYDE--IGWT-DSVMTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGI 289 Query: 327 IDLKKEKNFFETRVTEY 343 +FF Y Sbjct: 290 STSTANHDFFSGVGNGY 306 >gi|227537625|ref|ZP_03967674.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum ATCC 33300] gi|300771015|ref|ZP_07080892.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobacterium spiritivorum ATCC 33861] gi|227242511|gb|EEI92526.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum ATCC 33300] gi|300762288|gb|EFK59107.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobacterium spiritivorum ATCC 33861] Length = 328 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 132/313 (42%), Gaps = 19/313 (6%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 +A + W+ TE D+ WK GL+ D + K+ LG ++L ++ Sbjct: 16 DYALMFWEQNIKQFWIDTEYIPSKDIDSWK---GLSWDMKECYKKALGGLTLLDTLQSHT 72 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITA 157 + I H+ + + + L EA+H+ ++ I T++ ++F + + Sbjct: 73 GMPKIIDHIDSLQNKAVLSYMCMMEAIHAKSYSTIFTTVSTTNEINDVFGWVEQNKHLQF 132 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 KA +Y +++ D E L V+ E FY+GF L L +M Sbjct: 133 KAQTIDKYYRSIDKE-------DPTDEELFMALGASVLLESFLFYSGFFLPLWLCGQGQM 185 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 V A+ + I+ DES+H F + I P +E + + T+L+E E+ Y Sbjct: 186 VASADIIKKIIADESIHGVFVGLIAQDIFRRIP--NKEEVKARFLTLLNELYENELKYTE 243 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFF 336 E + ++Y+++ N+ +G +P+F+ + NP ++ + + +FF Sbjct: 244 EIYTVVGLTA---EVKEYVRYNGNKALMNLGFDPIFEVKQVNPIV-LNGLNTETTQHDFF 299 Query: 337 ETRVTEYQQGAEL 349 + T Y++ E+ Sbjct: 300 SKKSTNYEKATEI 312 >gi|319954718|ref|YP_004165985.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237] gi|319423378|gb|ADV50487.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237] Length = 424 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 69/338 (20%), Positives = 140/338 (41%), Gaps = 18/338 (5%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R KR N L P +Y +E + +++W+ +E D+ +K++ LT Sbjct: 92 RNEQSQKRKSNIFEKRINLKPYEYPELYEYVPAIRHSYWIHSEFNFTSDIQDFKTR--LT 149 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 D E+ IK + + E V IY + PE A E H+ + +++ Sbjct: 150 DTEQSAIKNTMLAISQIEVAV-KGFWGDIYHKMPKPEIGSVGATFAESEVRHADAYSHLL 208 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 LGL+ F ++ P+I + + + + ++++ + + +F + Sbjct: 209 EILGLNNE--FKNLKKKPAIMKRVQYL--------ETALKNAKSEDNKDYAESILLFSLF 258 Query: 196 FEGMWFYTGFAQILSLGRANKM-VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 E + ++ F I++ + M G++ + ++E +H +FGID+I IK ENP + Sbjct: 259 IEHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEEQIHGDFGIDIIKIIKKENPDWFD 318 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS-CEQYMQFIANRRCHQIGLEPLF 313 ++ + + M +A + E + KG + ++++ N IG+E +F Sbjct: 319 ADYHKTIQQMCKDAFIAESSVVDWIFEKGELDFLPKDVVNEFIKNRFNNSLESIGIEKIF 378 Query: 314 KYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348 + E W + I K +FF R Y + + Sbjct: 379 EVNEELIAETEWFDDEIIGTKHGDFFVKRSINYSKRTQ 416 >gi|304373620|ref|YP_003858365.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB16] gi|299829576|gb|ADJ55369.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB16] Length = 391 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 60/354 (16%), Positives = 129/354 (36%), Gaps = 36/354 (10%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L+ + +++ + V + K+ + W P E+ + D Sbjct: 2 LTVMNTNPDHKHLEQPMFFGEDTGVARYEEQKHRVFENLTEKQLSFFWRPEEIDLSIDRM 61 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + + E+++ NL + +++ LA S+ ++ AF E + Sbjct: 62 QYA---KMPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSMETWIETWAFSETI 118 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-------------- 172 HS ++ +I +L +D + F+ +I ++ +Y L + Sbjct: 119 HSRSYTHIQRNLHIDPSKEFDKILRNEAIMKRSASMTKYYDDLIAECHELKNIVLKIEML 178 Query: 173 -----------SFTTGTKDADQEF---LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 + K+ ++ L E + FY F + KM Sbjct: 179 TSHGYPDESIAEYEKKRKEQMRKCKIALYLCMHAVNALEAIRFYVSFTFTFNFAEQGKME 238 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIA 274 G A+ + I RDE+LH I ++ E +++++ + E E Sbjct: 239 GNAKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMAEIAFQYEEEATQIFLEVYEQEKE 298 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 +A G V ++ S Y++ + ++R +GL+ FK + NP+PWM++ + Sbjct: 299 WAEHLFSIGDVDGVSLKSTIAYIEHLTDQRMRAVGLQSPFKPSPNPYPWMNKWL 352 >gi|296111477|ref|YP_003621859.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc kimchii IMSNU 11154] gi|295833009|gb|ADG40890.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc kimchii IMSNU 11154] Length = 325 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 72/317 (22%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + WEK W+ T +P+ +DL W+ ++D ER + G Sbjct: 13 NWNTIEDELDKATWEKL---TQQFWLDTRIPISNDLKNWR--GNMSDQERQTMNLVFGGL 67 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 + ++L + + + + + N + L F E+VH+ ++ I +L ++ E+ Sbjct: 68 TTLDTLQSQDGMAQLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETL-NEKSEI---- 122 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E A N LQY + + TGT + + V E FY+GF L Sbjct: 123 -EAIFDWADTNEFLQYKANRINDIYQTGTSLQKK-------IASVFLETFLFYSGFYTPL 174 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NKM+ +AE + I+RDES+H + + P + Q +L+E Sbjct: 175 YFLGHNKMLNVAEIIKLIIRDESVHGTYIGYKFQIGFNKLPLAEQESLQSWMYDLLYELY 234 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326 E Y HE +G + ++++ AN+ +G EP+F NP M+ + Sbjct: 235 ENEEKYTHELYDD--LGWS-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGI 290 Query: 327 IDLKKEKNFFETRVTEY 343 +FF Y Sbjct: 291 STSTANHDFFSGVGNGY 307 >gi|300776394|ref|ZP_07086252.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC 35910] gi|300501904|gb|EFK33044.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC 35910] Length = 371 Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 66/316 (20%), Positives = 122/316 (38%), Gaps = 18/316 (5%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P +Y + + + W+ +EV D+ + S L E+ +K L A E Sbjct: 58 KPFEYPEVLQFVEAINKSFWVHSEVDFTADVQDFHS--QLEPHEKHAVKNALLAIAQIEV 115 Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 V +Y HL PE A E HS + ++ LG ++ F E+P+ Sbjct: 116 SV-KTFWGNLYNHLPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDE--FLNVIEIPA 172 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR- 213 + + + + +E++ L +F ++ E + ++ FA ILS R Sbjct: 173 VKGRIEFL--------GNALKHANSATPKEYVSALLLFSILVENVSLFSQFAIILSFTRF 224 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273 M ++ + DE +H N GI +IN+I+ E P L T + T++ E+ E Sbjct: 225 KGFMKNVSNIIAWTSVDEQIHANAGIYLINKIREEQPDLLTDSDIEDIYTLVDESIAREG 284 Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSEVIDL 329 G ++ +M++ + +I ++ + T P W E + Sbjct: 285 DILSWIFELGEIDNVSKEDLLNFMKYRVDDSLKKINMKTRYNITPEQYRPMVWFEEEVFA 344 Query: 330 KKEKNFFETRVTEYQQ 345 +FF R +Y + Sbjct: 345 NSLDDFFAKRPVDYTK 360 >gi|300173988|ref|YP_003773154.1| ribonucleoside-diphosphate reductase subunit beta [Leuconostoc gasicomitatum LMG 18811] gi|299888367|emb|CBL92335.1| ribonucleoside-diphosphate reductase, beta subunit [Leuconostoc gasicomitatum LMG 18811] Length = 325 Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 70/317 (22%), Positives = 121/317 (38%), Gaps = 25/317 (7%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + WEK W+ T +P+ +DL W+ ++D ER + G Sbjct: 13 NWNTIEDELDKATWEKL---TQQFWLDTRIPISNDLKTWR--GNMSDQERQTMNLVFGGL 67 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 + ++L + + + + + N + L F E+VH+ ++ I +L Sbjct: 68 TTLDTLQSQDGMAQLKLDVVNQKEEAVLNNIQFMESVHAKSYSSIFETLNEKTE------ 121 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E A N LQY + + TG+ + + V E FY+GF L Sbjct: 122 IEAIFDWADTNEFLQYKANRINGIYQTGSPLQKK-------IASVFLETFLFYSGFYTPL 174 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 NKM+ +AE + I+RDES+H + + P E Q +L+E Sbjct: 175 YFLGHNKMLNVAEIIKLIIRDESVHGTYIGYKFQIGFNQLPAEEKSELQSWMYDLLYELY 234 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326 E Y H+ +G ++++ AN+ +G EP+F NP M+ + Sbjct: 235 ENEEKYTHQLYDD--LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGADDVNPVV-MNGI 290 Query: 327 IDLKKEKNFFETRVTEY 343 +FF Y Sbjct: 291 STSTANHDFFSGVGNGY 307 >gi|15923722|ref|NP_371256.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus Mu50] gi|15926409|ref|NP_373942.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus N315] gi|21282423|ref|NP_645511.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MW2] gi|49482989|ref|YP_040213.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MRSA252] gi|49485604|ref|YP_042825.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MSSA476] gi|57651569|ref|YP_185668.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus COL] gi|82750436|ref|YP_416177.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus RF122] gi|87162072|ref|YP_493420.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194508|ref|YP_499303.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267192|ref|YP_001246135.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus JH9] gi|150393241|ref|YP_001315916.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus JH1] gi|151220913|ref|YP_001331735.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus str. Newman] gi|156979060|ref|YP_001441319.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus Mu3] gi|161508997|ref|YP_001574656.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141144|ref|ZP_03565637.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315835|ref|ZP_04839048.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731358|ref|ZP_04865523.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253732821|ref|ZP_04866986.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH130] gi|255005523|ref|ZP_05144124.2| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424852|ref|ZP_05601279.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257427520|ref|ZP_05603919.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257430151|ref|ZP_05606535.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus 68-397] gi|257432852|ref|ZP_05609212.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus E1410] gi|257435756|ref|ZP_05611804.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus M876] gi|257794947|ref|ZP_05643926.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9781] gi|258418263|ref|ZP_05682528.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A9763] gi|258421560|ref|ZP_05684485.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9719] gi|258430755|ref|ZP_05688467.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A9299] gi|258441753|ref|ZP_05691025.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A8115] gi|258445806|ref|ZP_05693983.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A6300] gi|258449617|ref|ZP_05697719.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A6224] gi|258452940|ref|ZP_05700934.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A5948] gi|258454017|ref|ZP_05701989.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A5937] gi|262049516|ref|ZP_06022386.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus aureus D30] gi|262052319|ref|ZP_06024522.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus aureus 930918-3] gi|269202352|ref|YP_003281621.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ED98] gi|282894500|ref|ZP_06302729.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A8117] gi|282903362|ref|ZP_06311253.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C160] gi|282905140|ref|ZP_06312998.1| ribonucleoside-diphosphate reductase beta subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282908118|ref|ZP_06315949.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910377|ref|ZP_06318181.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282913572|ref|ZP_06321361.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus M899] gi|282918525|ref|ZP_06326262.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C427] gi|282922028|ref|ZP_06329725.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9765] gi|282923491|ref|ZP_06331171.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C101] gi|282926597|ref|ZP_06334227.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A10102] gi|283957564|ref|ZP_06375017.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|284023753|ref|ZP_06378151.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus 132] gi|293500617|ref|ZP_06666468.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293509565|ref|ZP_06668276.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus M809] gi|293524151|ref|ZP_06670838.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus M1015] gi|294849402|ref|ZP_06790145.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754] gi|295406453|ref|ZP_06816259.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819] gi|295427309|ref|ZP_06819944.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275141|ref|ZP_06857648.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MR1] gi|297208541|ref|ZP_06924970.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245179|ref|ZP_06929053.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796] gi|297590338|ref|ZP_06948977.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MN8] gi|300912633|ref|ZP_07130076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH70] gi|304381650|ref|ZP_07364299.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|4490610|emb|CAB38643.1| ribonucleotide reductase minor subunit [Staphylococcus aureus] gi|13700623|dbj|BAB41920.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus aureus subsp. aureus N315] gi|14246501|dbj|BAB56894.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus aureus subsp. aureus Mu50] gi|14329710|emb|CAC40668.1| ribonucleotide-diphosphate reductase beta chain [Staphylococcus aureus] gi|21203860|dbj|BAB94559.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus aureus subsp. aureus MW2] gi|49241118|emb|CAG39796.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus aureus subsp. aureus MRSA252] gi|49244047|emb|CAG42473.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus aureus subsp. aureus MSSA476] gi|57285755|gb|AAW37849.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus COL] gi|82655967|emb|CAI80371.1| ribonucelotide diphosphate reductase beta chain [Staphylococcus aureus RF122] gi|87128046|gb|ABD22560.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202066|gb|ABD29876.1| ribonucleotide-disphosphate reductase beta chain, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740261|gb|ABQ48559.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Staphylococcus aureus subsp. aureus JH9] gi|149945693|gb|ABR51629.1| Ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus JH1] gi|150373713|dbj|BAF66973.1| ribonucleotide-diphosphate reductase beta chain [Staphylococcus aureus subsp. aureus str. Newman] gi|156721195|dbj|BAF77612.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus aureus subsp. aureus Mu3] gi|160367806|gb|ABX28777.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724883|gb|EES93612.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253729186|gb|EES97915.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH130] gi|257272422|gb|EEV04545.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257275713|gb|EEV07186.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257279348|gb|EEV09949.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus 68-397] gi|257282267|gb|EEV12402.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus E1410] gi|257284947|gb|EEV15066.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus M876] gi|257788919|gb|EEV27259.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9781] gi|257839056|gb|EEV63535.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A9763] gi|257842486|gb|EEV66910.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9719] gi|257849427|gb|EEV73397.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A9299] gi|257852222|gb|EEV76149.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A8115] gi|257855382|gb|EEV78320.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A6300] gi|257857125|gb|EEV80024.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A6224] gi|257859451|gb|EEV82305.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A5948] gi|257863882|gb|EEV86638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus A5937] gi|259159759|gb|EEW44800.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus aureus 930918-3] gi|259162352|gb|EEW46924.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus aureus D30] gi|262074642|gb|ACY10615.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ED98] gi|269940309|emb|CBI48686.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus aureus subsp. aureus TW20] gi|282314359|gb|EFB44749.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C101] gi|282317659|gb|EFB48031.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C427] gi|282322604|gb|EFB52926.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus M899] gi|282325769|gb|EFB56077.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282327783|gb|EFB58065.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331965|gb|EFB61476.1| ribonucleoside-diphosphate reductase beta subunit [Staphylococcus aureus subsp. aureus Btn1260] gi|282591490|gb|EFB96562.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A10102] gi|282593686|gb|EFB98678.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9765] gi|282596317|gb|EFC01278.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus C160] gi|282763213|gb|EFC03344.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A8117] gi|283470026|emb|CAQ49237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus ST398] gi|283791015|gb|EFC29830.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|285816434|gb|ADC36921.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus aureus 04-02981] gi|290921114|gb|EFD98175.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus aureus subsp. aureus M1015] gi|291095622|gb|EFE25883.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291467662|gb|EFF10177.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus M809] gi|294823934|gb|EFG40360.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754] gi|294968598|gb|EFG44621.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819] gi|295128697|gb|EFG58328.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886796|gb|EFH25700.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177850|gb|EFH37099.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796] gi|297576637|gb|EFH95352.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus MN8] gi|298694063|gb|ADI97285.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp. aureus ED133] gi|300886879|gb|EFK82081.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH70] gi|302332442|gb|ADL22635.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus JKD6159] gi|302750629|gb|ADL64806.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339753|gb|EFM05698.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438843|gb|ADQ77914.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus TCH60] gi|312829224|emb|CBX34066.1| ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129414|gb|EFT85407.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus CGS03] gi|315194351|gb|EFU24743.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus CGS00] gi|315196404|gb|EFU26755.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus CGS01] gi|320139937|gb|EFW31798.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320141974|gb|EFW33802.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus MRSA177] gi|323438919|gb|EGA96654.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus O11] gi|323441867|gb|EGA99507.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus aureus O46] gi|329313453|gb|AEB87866.1| Ribonucleoside-diphosphate reductase class Ib beta subunit [Staphylococcus aureus subsp. aureus T0131] gi|329724628|gb|EGG61135.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 21172] gi|329728537|gb|EGG64970.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 21189] Length = 323 Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 125/331 (37%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ L++ E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + + H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + K++ + L K+A V V E F Sbjct: 113 NYLLDEWVLEEPHLKYKSDKIVANYHKLWG-------KEASIYDQYMARVTSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 ++GF L L KM E + I+ DES+H F ++ E ++ Q+ Sbjct: 166 FSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L++ L E +Y + Y+++ N+ +G EP F+ E NP Sbjct: 226 YKLLNDLYLNEESYTKMLYDDLGI---TEDVLNYVKYNGNKALSNLGFEPYFEEREFNPI 282 Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYVLALNVE 311 >gi|66391516|ref|YP_239041.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB43] gi|62288604|gb|AAX78587.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB43] Length = 391 Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 61/354 (17%), Positives = 128/354 (36%), Gaps = 36/354 (10%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 L+ + +++ + V + K+ + W P EV + D Sbjct: 2 LTVMNTNPDHKHLEQPMFFGEDTGVARYEEQKHRVFETLTEKQLSFFWRPEEVDLSIDRM 61 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + + E+++ NL + +++ LA S+ ++ AF E + Sbjct: 62 QYA---KMPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSMETWIETWAFSETI 118 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-------------- 172 HS ++ +I +L +D + F+ +I ++ +Y L + Sbjct: 119 HSRSYTHIQRNLHIDPAKEFDKILRNEAIMKRSASMTKYYDDLIAECHELKNIVLKIEMM 178 Query: 173 -----------SFTTGTKDADQEF---LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 + K+ ++ L E + FY F + KM Sbjct: 179 TSHGYPDESIAEYEQKRKEQMRKCKVALYLCMHAVNALEAIRFYVSFTFTFNFAEQGKME 238 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIA 274 G A+ + I RDE+LH I ++ E +++++ + E E Sbjct: 239 GNAKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMAEIAYQYEEEATQIFLEVYEQEKE 298 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 +A G V + S Y++ + ++R +GL+ FK + NP+PWM++ + Sbjct: 299 WAEHLFSIGDVDGVTLKSTIAYIEHLTDQRMRAVGLQSPFKPSPNPYPWMNKWL 352 >gi|76803441|ref|YP_327710.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Natronomonas pharaonis DSM 2160] gi|76559256|emb|CAI50863.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Natronomonas pharaonis DSM 2160] Length = 336 Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 140/325 (43%), Gaps = 18/325 (5%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 S+ QL P +Y + + N++W+ TE D+ +++ T E+ +IKR + Sbjct: 17 SERTQLKPYEYADFLDYKDAIRNSYWVHTEFNFSGDVQDFRTNT--TPAEKTVIKRTMLA 74 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 A E IY + E + A E H + +++ LG+ E F Sbjct: 75 IAQIEV-QVKTFWADIYDEMPKTEVGNVGMTFAESEVRHMDAYSHLLDILGITED--FEE 131 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 +VP+I + + +Y D QE++ + +F E + ++ F + Sbjct: 132 VTDVPAIEDRIEYLDKY--------LEKSESDDKQEYVMSILLFSTFVEHVSLFSQFLIM 183 Query: 209 LSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 +S + K GIA + ++E +H FG++++ I+ ENP L+ ++F+++ + Sbjct: 184 MSFDKYKKKFKGIANAVEATSKEEQIHGLFGVELVETIREENPDLFDEDFEEEVQAACQR 243 Query: 268 ATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WM 323 A E+ +G + + +++ N+ +G+EP+F+ + W Sbjct: 244 AFEAEMKILDWIFGEGELEFLPRTHVDAFLRDRFNQSLENVGVEPIFEPDDGLLEETRWF 303 Query: 324 SEVIDLKKEKNFFETRVTEYQQGAE 348 E I + K+ +FF R T Y + A+ Sbjct: 304 DEDIMMTKDNDFFSKRSTTYNKHAQ 328 >gi|282916074|ref|ZP_06323837.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus D139] gi|283769895|ref|ZP_06342787.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus H19] gi|282320022|gb|EFB50369.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus D139] gi|283460042|gb|EFC07132.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus aureus subsp. aureus H19] Length = 323 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 125/331 (37%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ L++ E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + + H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + K++ + L K+A V V E F Sbjct: 113 NYLLDEWVLEEPHLKYKSDKIVANYHKLWG-------KEASIYDQYMARVTSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 ++GF L L KM E + I+ DES+H F ++ E ++ Q+ Sbjct: 166 FSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L++ L E +Y + Y+++ N+ +G EP F+ E NP Sbjct: 226 YKLLNDLYLNEESYTKMLYDDLGI---TEDVLNYVKYNGNKALSNLGFEPYFEEREFNPI 282 Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYVLALNVE 311 >gi|167856024|ref|ZP_02478769.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus parasuis 29755] gi|219871494|ref|YP_002475869.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus parasuis SH0165] gi|167852863|gb|EDS24132.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus parasuis 29755] gi|219691698|gb|ACL32921.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus parasuis SH0165] Length = 325 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 65/320 (20%), Positives = 127/320 (39%), Gaps = 19/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 Q+ P +Y E + +++W+ TE D+ +++ + D ER ++ R + + Sbjct: 9 RIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--NINDHERHVLTRAMLAIS 66 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y + PE A E H + +++ LGL+ ++F Sbjct: 67 QVEVNV-KRFWGELYHYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--DMFTQIT 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E+ + + + F +F+ L +F + E + + F ++S Sbjct: 124 EIEPLMKRIRYM---------EDFMREKDTGKGQFVLSLVLFSLFVEHISLFGQFIIMMS 174 Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + N GI+ + ++E +H FGI + + E+ L+T EF ++ +T+ +A Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGRFGIALYEILSDEHSELFTPEFFEELKTLSQQAF 234 Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325 E +G + + + E Y+ N +GLEP + W Sbjct: 235 EAERGILDWIFEEGDLSFISRKTVENYIMNRYNNSLSILGLEPPYDVDPELLKETEWFDI 294 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 295 EIISTKETDFFNKRSTDYSK 314 >gi|703073|gb|AAA80557.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2] Length = 354 Score = 185 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 62/309 (20%), Positives = 115/309 (37%), Gaps = 28/309 (9%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + N W TE + DDL L +E+ + F ++++ LV N Sbjct: 63 PDIGNLRSLSIMNRWTETEFVIADDLED---VGKL-KNEKNFYRFLFTFLSAADDLVNLN 118 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSI 155 I ++ + + Y Q EAVHS + I L ++ Y P+I Sbjct: 119 I-DSLLSLFTQKDIHHYYFEQECIEAVHSRAYSIIQLMLFSNDQAARQEYVTSTLRSPAI 177 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 +K W + + A+ + + ++ ++ EG++F FA I L N Sbjct: 178 LSKLEWLER--------------RVAECTSIAEKYILMILIEGIFFTASFAAIAYLRVNN 223 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 V + I RDE++H+ + K + T+ EA +E + Sbjct: 224 LFVVTCQINNLISRDEAIHVEASCCIFKNYLAGP-----KPTTARIHTLFKEAVTVECEF 278 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 P+ +N + Y+++ A+R + + P++ + P + ++ NF Sbjct: 279 LRTAAPRTSNIINIDAICSYVRYSADRLLRALDILPIYDEPKPPADFPLVLMSAASNTNF 338 Query: 336 FETRVTEYQ 344 FE R T Y Sbjct: 339 FERRNTAYS 347 >gi|258423381|ref|ZP_05686272.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9635] gi|257846442|gb|EEV70465.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus A9635] Length = 323 Score = 185 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 125/331 (37%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ L++ E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + + H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + K++ + L K+A V V E F Sbjct: 113 NYLLDVWVLEEPHLKYKSDKIVANYHKLWG-------KEASIYDQYMARVTSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 ++GF L L KM E + I+ DES+H F ++ E ++ Q+ Sbjct: 166 FSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L++ L E +Y + Y+++ N+ +G EP F+ E NP Sbjct: 226 YKLLNDLYLNEESYTKMLYDDLGI---TEDVLNYVKYNGNKALSNLGFEPYFEEREFNPI 282 Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYVLALNVE 311 >gi|47213107|emb|CAF89527.1| unnamed protein product [Tetraodon nigroviridis] Length = 369 Score = 185 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 6/149 (4%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + P++Y W+ Y A + W EV + DL W+S L DDER Sbjct: 1 EEPLLKENPRRFVIFPIQYQDLWQMYKKAEASFWTAEEVDLSKDLQHWES---LKDDERF 57 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I L FFA+S+ +V N+V + + E R + Q E +HS + +I + Sbjct: 58 FISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIK 117 Query: 141 DEGEL---FNMYREVPSITAKANWALQYT 166 + E FN +P + KA+WAL + Sbjct: 118 EPSEREYLFNAIETLPCVKKKADWALNWI 146 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 323 AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVM 355 >gi|261496013|ref|ZP_05992423.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308263|gb|EEY09556.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica serotype A2 str. OVINE] Length = 325 Score = 185 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 68/320 (21%), Positives = 129/320 (40%), Gaps = 19/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 + P +Y E + +++W+ TE D+ +++ + D ER ++ R + + Sbjct: 9 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--TINDHERHVLTRAMLAIS 66 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +YR+ PE A E H + +++ LGL+ E+F+ Sbjct: 67 QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIH 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E+ + + + SF EF+ L +F + E + + F ++S Sbjct: 124 EIEPLMNRIRYM---------ESFMKDKDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMS 174 Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + N GI+ + ++E +H FGI + ++ E+ L+T EF + +T+ ++A Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAF 234 Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325 E +G + + E Y++ N +GLEP W Sbjct: 235 EAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLEPPHDIDPEFLKETEWFDI 294 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 295 EILSTKETDFFNKRSTDYSK 314 >gi|116617385|ref|YP_817756.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096232|gb|ABJ61383.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 325 Score = 185 bits (471), Expect = 7e-45, Method: Composition-based stats. Identities = 65/324 (20%), Positives = 123/324 (37%), Gaps = 22/324 (6%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 + N ++ + W+ T +P+ +DL W+ +++ ER + Sbjct: 3 HINNGSYTAINWNNIEDELDKATWEKLTQQFWLDTRIPISNDLRTWR--GNMSEQERQTM 60 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 G + ++L + + + + +N + L F E+VH+ ++ I +L ++ Sbjct: 61 NLVFGGLTTLDTLQSQDGMAQLKLDATNQKEEAVLNNIQFMESVHAKSYSSIFETL-NEK 119 Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 E+ ++ S N LQY + + G+ + + V E FY Sbjct: 120 VEIEKIFEWADS-----NEFLQYKANRINDIYHNGSALQKK-------IASVFLETFLFY 167 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262 +GF L NKM+ +AE + I+RDES+H + + E Q Sbjct: 168 SGFYTPLYFLGHNKMLNVAEIIKLIIRDESVHGTYIGYKFQIGFNKISAEERTELQSWMY 227 Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP 319 +L+E E Y HE +G ++++ AN+ +G EP+F NP Sbjct: 228 DLLYELYENEEKYTHELYDD--LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNP 284 Query: 320 FPWMSEVIDLKKEKNFFETRVTEY 343 M+ + +FF Y Sbjct: 285 VV-MNGISTSTANHDFFSGVGNGY 307 >gi|82492124|gb|ABB77921.1| ribonucleotide reductase beta chain [Environmental halophage 1 AAJ-2005] Length = 358 Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats. Identities = 69/347 (19%), Positives = 139/347 (40%), Gaps = 20/347 (5%) Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 +S E++ + D + + + L P +Y + + N++W+ E D+ Sbjct: 19 MSEANKPERKDDTDSQSDIF--TARQHLKPYEYTDFLDYVDAVRNSYWVHDEFNFDGDIQ 76 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 ++ T E+ IKR + A E IY + E + A E Sbjct: 77 DYRVNT--TPAEQTTIKRTMLAIAQIEV-QVKTFWSDIYEDMPKAEVGNVGMTFAESEVR 133 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 H + +++ LG+++ F EVP++ + + +Y G+ + QE + Sbjct: 134 HMDAYSHLLDVLGIEDE--FEQITEVPAVQQRIEYLDEY--------LEMGSSENKQESV 183 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 + +F E + ++ F + S + K GIA + ++E +H FG +++ I Sbjct: 184 MGILMFSTFVEHVSLFSQFLIMTSFDKHEKKFKGIANAVEATSKEEQIHGLFGQELVETI 243 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRC 304 + ENP L+ +F + + +A E + G + + +++ N+ Sbjct: 244 REENPDLFDDDFTDEIQDACQQAYEAESEILDWILEDGELDFLPREHIDAFLKDRFNQSL 303 Query: 305 HQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQGAE 348 G++P+F E+ W E I + KE +FF R T Y + + Sbjct: 304 DNAGVDPVFDPDEDVVDETRWFDEDIMMTKENDFFSKRSTTYNKHTQ 350 >gi|329729655|gb|EGG66056.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus aureus subsp. aureus 21193] Length = 323 Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 125/331 (37%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ TE + D+A WK+ L++ E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVETEFKVSKDIASWKT---LSETEQDTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144 L ++ A++ + + H ++ + A E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSET 112 Query: 145 LF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 + E P + K++ + L K+A V V E F Sbjct: 113 NYLLDEWVLEEPHLKYKSDKIVANYHKLWG-------KEASIYDQYMARVTSVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 ++GF L L KM E + I+ DES+H F ++ E ++ Q+ Sbjct: 166 FSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L++ L E +Y + Y+++ N+ +G EP F+ E NP Sbjct: 226 YKLLNDLYLNEESYTKMLYDDLGI---TEDVLNYVKYNGNKALSNLGFEPYFEEREFNPI 282 Query: 321 PWMSEVID-LKKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 283 --IENALDTTTKNHDFFSVKGDGYVLALNVE 311 >gi|229823057|ref|ZP_04449126.1| hypothetical protein GCWU000282_00352 [Catonella morbi ATCC 51271] gi|229787496|gb|EEP23610.1| hypothetical protein GCWU000282_00352 [Catonella morbi ATCC 51271] Length = 336 Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats. Identities = 61/318 (19%), Positives = 114/318 (35%), Gaps = 28/318 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 D N++ + WEK W+ T +P+ +DL W++ L+ ER ++ + G Sbjct: 26 DWNKVEDMIDKLTWEKL---TEQFWLDTRIPVSNDLDDWRT---LSMAERDVVAKAFGGL 79 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 ++L + + + F E+VH+ ++ I ++L + E+F Sbjct: 80 TLLDTLQSEEGAALMKDFVRTQHEEAVWNNIQFMESVHAKSYSTIFSTLNTKAEIEEIFE 139 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + KA + Q+ + + E FY+GF Sbjct: 140 WTNTNEQLQYKAKKINEIYQSGHG---------------LKIKAASTMLETFLFYSGFFT 184 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ +AE + I+RDES+H + E P E + + + Sbjct: 185 PLYYLGNNKLANVAEIIKLIIRDESVHGTYTGYKFQLGYNELPEDQQAELKMWVYELCMD 244 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325 E Y + VG + ++++ AN+ +G +PLF T M+ Sbjct: 245 LYQNEAKYTQSLYDQ--VGWT-EKVKVFIRYNANKALQNLGFDPLFPDTAEDVDPIVMNG 301 Query: 326 VIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 302 ISTGTSNHDFFSQVGNGY 319 >gi|227431268|ref|ZP_03913322.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353030|gb|EEJ43202.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 327 Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats. Identities = 65/324 (20%), Positives = 123/324 (37%), Gaps = 22/324 (6%) Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82 + N ++ + W+ T +P+ +DL W+ +++ ER + Sbjct: 5 HINNGSYTAINWNNIEDELDKATWEKLTQQFWLDTRIPISNDLRTWR--GNMSEQERQTM 62 Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 G + ++L + + + + +N + L F E+VH+ ++ I +L ++ Sbjct: 63 NLVFGGLTTLDTLQSQDGMAQLKLDATNQKEEAVLNNIQFMESVHAKSYSSIFETL-NEK 121 Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 E+ ++ S N LQY + + G+ + + V E FY Sbjct: 122 VEIEKIFEWADS-----NEFLQYKANRINDIYHNGSALQKK-------IASVFLETFLFY 169 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262 +GF L NKM+ +AE + I+RDES+H + + E Q Sbjct: 170 SGFYTPLYFLGHNKMLNVAEIIKLIIRDESVHGTYIGYKFQIGFNKISAEERTELQSWMY 229 Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP 319 +L+E E Y HE +G ++++ AN+ +G EP+F NP Sbjct: 230 DLLYELYENEEKYTHELYDD--LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNP 286 Query: 320 FPWMSEVIDLKKEKNFFETRVTEY 343 M+ + +FF Y Sbjct: 287 VV-MNGISTSTANHDFFSGVGNGY 309 >gi|28393533|gb|AAO42187.1| putative ribonucleoside-diphosphate reductase small chain [Arabidopsis thaliana] Length = 243 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 23/196 (11%) Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 +T KA WA+++ + + V + EG++F F I L + Sbjct: 51 VTKKAEWAMKWING--------------SQSFAERIVAFACVEGIFFSGSFCSIFWLKKR 96 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 M G+ + I RDE LH +F + + ++ TK + + + ++ +A +E Sbjct: 97 GLMPGLTFSNELISRDEGLHCDFACLIYSLLR-------TKFDEDRLKAIVCDAVEIERE 149 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 + + + VG+N QY++F+A+R +G ++ T NPF WM E+I L+ + N Sbjct: 150 FVCDALSCALVGMNRELMSQYIEFVADRLLAALGCGKVYGVT-NPFDWM-ELISLQGKTN 207 Query: 335 FFETRVTEYQQGAELK 350 FFE RV EYQ+ + + Sbjct: 208 FFEKRVGEYQKASVMS 223 >gi|319891738|ref|YP_004148613.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus pseudintermedius HKU10-03] gi|317161434|gb|ADV04977.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Staphylococcus pseudintermedius HKU10-03] gi|323465093|gb|ADX77246.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus pseudintermedius ED99] Length = 320 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 121/330 (36%), Gaps = 28/330 (8%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + W+ TE + D+A WKS LT+ E+ K+ Sbjct: 6 WNTQEDMTNMF----------WRQNIAQMWVETEFKVSKDIASWKS---LTEAEQDTFKK 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDE 142 L ++ A++ + I H + + E +H+ ++ +I T+L + Sbjct: 53 ALAGLTGLDTHQADDGMPLIMLHTQDLRKKAVYSFMGMMEQIHAKSYSHIFTTLLPSKET 112 Query: 143 GELFN-MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 EL + E P + K+ + L K+A V V E F Sbjct: 113 DELLDVWVLEEPHLKYKSEKIVGTYHKLWG-------KEASIYDQYMARVASVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 ++GF L L +M E + I+ DES+H F ++ E ++ ++ Sbjct: 166 FSGFYYPLYLAGQGRMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEKQKADKEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 +L + E +Y + Y+++ N+ +G EP F+ E P Sbjct: 226 YQLLEDLYANEASYTRSLYDPIGL---TDDVMNYVRYNGNKALSNLGFEPYFEEREFS-P 281 Query: 322 WMSEVIDL-KKEKNFFETRVTEYQQGAELK 350 + +D K +FF + Y ++ Sbjct: 282 IIENALDTSTKNHDFFSVKGDGYVLALNVE 311 >gi|269123322|ref|YP_003305899.1| Ribonucleoside-diphosphate reductase [Streptobacillus moniliformis DSM 12112] gi|268314648|gb|ACZ01022.1| Ribonucleoside-diphosphate reductase [Streptobacillus moniliformis DSM 12112] Length = 333 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 131/307 (42%), Gaps = 15/307 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE D+ W S L+ + R K+ LG ++L ++ + I Sbjct: 22 FWEQNLRQFWIDTEYIPSKDIDSWHS---LSPEMRETYKKVLGGLTLLDTLQSHTGMPKI 78 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + +CR L E++H+ ++ I T++ E E+F ++ + KAN Sbjct: 79 IDHIESLQCRSVLSYMCMMESIHAKSYSTIFTTVASTEEINEIFRWVQDNQYLQFKANKI 138 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 +Y Q L++P +A + V V E FY+GF L L +MV ++ Sbjct: 139 DEYYQCLNNP-------NATPREIYMALVASVFLESYLFYSGFFLPLWLSGHGQMVASSD 191 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I+ DES+H F + +I E + + +++ + +E E+ + E Sbjct: 192 IIKKIIADESIHGVFVGKLAQEIFEEMSFVEKESVKKEIMNLFYELYENELKFTDEIYSD 251 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 + ++Y+++ N+ +G + F+ E ++ + + +FF + T Sbjct: 252 VGL---TSEVKEYIRYNGNKALMNLGFKEEFEIKEVNAIVLNGLNVETTQHDFFSKKSTN 308 Query: 343 YQQGAEL 349 Y++ E+ Sbjct: 309 YEKTLEV 315 >gi|227502192|ref|ZP_03932241.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC 49725] gi|227077016|gb|EEI14979.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC 49725] Length = 337 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 57/334 (17%), Positives = 120/334 (35%), Gaps = 36/334 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D W + + ER + R Sbjct: 28 NWNRIWDDKDLEVWN---RLTSNFWLPEKVPLSNDRNDW---SCMDPAERDLTIRVFTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ A ++ + AF +AVH+ ++ I ++L E + + Sbjct: 82 TLLDTVQATVGEISQIQDARTEHEEAVYTNIAFMQAVHARSYSSIFSTLASTEEIEKSYA 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + P + +A + + + V + + Y GF Sbjct: 142 WAVDNPVLQQRATSVMVHY---------------YGDDPLKRKVASTLLSSLLLYAGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L K+ A+ + I+RD+++H + + +E ++ + ++ + Sbjct: 187 PLHFSVHGKLTNTADMIRLILRDKAVHGYYSGYKFQRGLDHATEARREEMREFTFDLVRK 246 Query: 268 ATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323 LE+ Y+ E P G ++++ AN+ +G LF Y E NP Sbjct: 247 LYDLEMRYSGELYEPYGL----MDDVATFVRYNANKALMNLGYPNLFPYEECQVNPKILA 302 Query: 324 SEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G ++ WD Sbjct: 303 ALTPGSDENHDFFSGSGSSYIIGKAVETSDADWD 336 >gi|294505968|ref|YP_003570026.1| Ribonucleoside-diphosphate reductase beta subunit [Salinibacter ruber M8] gi|294342296|emb|CBH23074.1| Ribonucleoside-diphosphate reductase beta subunit [Salinibacter ruber M8] Length = 324 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 137/321 (42%), Gaps = 18/321 (5%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + L P +Y E + ++W+ E + D+ ++ TD ER +IK+ + Sbjct: 6 ERVNLKPYEYPHLLEFKTAIRQSYWVHDEFSFEGDVQDFR--VNCTDAERSVIKKTMLAI 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 A E V IY L PE + A E H + +++ LGL++ F Sbjct: 64 AQVEVAV-KTFWADIYDRLPVPEVGAVGMTFAESEVRHLDAYSHLLELLGLNDA--FERI 120 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E+P++ + + L+S TG++D ++ F + +F + E + ++ F +L Sbjct: 121 EEIPALIDRVEY-------LNSALEGTGSRD-ERAFAHSILLFSIFIEHVSLFSQFLIML 172 Query: 210 SLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 S + K G+A + ++E +H FG++++N I+ E+P + F+Q+ R EA Sbjct: 173 SFDKHEKRFKGVANAVEATSKEEQIHGLFGVELMNIIREEHPEWFGPAFEQEVRAACEEA 232 Query: 269 TLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMS 324 E G + P + +++ N + ++P+F+ W Sbjct: 233 YDAEQKVLDWIFADGELDFLPRPVVDAFLRDKFNESLKNVDVDPIFEVDPEHLGETRWFY 292 Query: 325 EVIDLKKEKNFFETRVTEYQQ 345 E I L K +FF R T Y + Sbjct: 293 EEILLTKGNDFFSKRSTSYSK 313 >gi|323341317|ref|ZP_08081561.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus ruminis ATCC 25644] gi|323091194|gb|EFZ33822.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus ruminis ATCC 25644] Length = 317 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 63/319 (19%), Positives = 120/319 (37%), Gaps = 30/319 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L WEK W+ T +P+ +DL WK + ++E ++++ G Sbjct: 9 NWNVLDDALDKAVWEKL---TEQFWLDTRIPLSNDLNDWK---KMKEEEHALVEKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 ++L + + + A+ + L F E+VH+ ++ I ++L E+F Sbjct: 63 TLLDTLQSVDGMSALKKDALTSHEAAVLNNIEFMESVHAKSYSSIFSTLNTPAEIEEIFE 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + + KA + + V E FY+GF Sbjct: 123 WTEKNEYLQYKAEKICAIYR---------------GDDALMKKAASVFLESFLFYSGFYA 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L N++ +AE + I+RDES+H + ++ + + +L++ Sbjct: 168 PLYFLGHNRLNNVAEIIKLILRDESVHGTYIGYKFQIRYRALAEEEQEKLKFEIVNLLYD 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E Y HE + +G ++++ AN+ +G EPLF+ T NP M+ Sbjct: 228 LYQNEEKYTHELYDE--LGWT-EDVGIFLRYNANKALMNLGFEPLFEETATDVNPVV-MN 283 Query: 325 EVIDLKKEKNFFETRVTEY 343 + +FF Y Sbjct: 284 GISTSTSNHDFFSQVGNGY 302 >gi|313206313|ref|YP_004045490.1| ribonucleotide reductase [Riemerella anatipestifer DSM 15868] gi|312445629|gb|ADQ81984.1| ribonucleotide reductase [Riemerella anatipestifer DSM 15868] gi|315023179|gb|EFT36190.1| ribonucleotide reductase [Riemerella anatipestifer RA-YM] gi|325336242|gb|ADZ12516.1| ribonucleoside-diphosphate reductase beta chain [Riemerella anatipestifer RA-GD] Length = 324 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 122/320 (38%), Gaps = 18/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + + + W+ +EV D+ + S L E+ +K L A Sbjct: 7 RINYKPFEYPEVMQYIEAINKSFWVHSEVDFTADIQDFHS--QLEPHEKNAVKNALLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y HL PE A E HS + ++ LG + F Sbjct: 65 QIEVSV-KTFWGNLYNHLPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNNE--FLNVI 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E P+I + ++ +E++ L +F ++ E + ++ FA ILS Sbjct: 122 ENPAIRKRIDFLT--------DVLRNSNSSTPKEYVSSLLLFSILIENVSLFSQFAIILS 173 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 R M ++ + DE +H N GI +IN+IK E P L +E + ++ + Sbjct: 174 FTRFKGYMKNVSNIIAWTSVDEQIHANAGIYIINKIKEEQPELLQEEDIEAIYNIVKTSV 233 Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325 LE G L+ +M++ + +IG+ +F TE P W E Sbjct: 234 ELEAEILDWIFEMGDLDHLSKKQLLSFMKYRIDDSLKRIGMASMFNITEEEYKPMVWFEE 293 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 + +FF R +Y + Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313 >gi|326692188|ref|ZP_08229193.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc argentinum KCTC 3773] Length = 325 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 63/301 (20%), Positives = 117/301 (38%), Gaps = 22/301 (7%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + W+ T +P+ +DL W+ ++ E+ + G + ++L + + + + Sbjct: 27 WEKLTQQFWLDTRIPISNDLRHWR--GNMSPQEQKTMNLVFGGLTTLDTLQSQDGLAQLK 84 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 N + L F E++H+ ++ I +L ++ E+ E A N LQY Sbjct: 85 FDSLNQKEEAVLNNIQFMESIHAKSYSSIFETL-NEKSEI-----EAIFDWADNNEFLQY 138 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 + + TGT + + V E FY+GF L N+M+ +AE + Sbjct: 139 KANRINDIYQTGTSLQKK-------IASVFLETFLFYSGFYTPLYFLGHNRMLNVAEIIK 191 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 I+RDES+H + + E Q +L++ E Y HE + Sbjct: 192 LIIRDESVHGTYIGYKFQIGFNQLSEDEQAELQAWMYDLLYDLYENEEKYTHELYDD--L 249 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTE 342 G ++++ AN+ +G EP+F NP M+ + +FF Sbjct: 250 GW-YEQVMTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGLSTSTANHDFFSGVGNG 307 Query: 343 Y 343 Y Sbjct: 308 Y 308 >gi|34763895|ref|ZP_00144797.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886329|gb|EAA23602.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 245 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 11/239 (4%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59 M + E ++ ++++ +++ L ++Y WA + Y + N W+P +V Sbjct: 1 MKVAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60 Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D +++ LT ER L F +S+ NNI I H++ PE L Sbjct: 61 DLTQDKNDYEN---LTVPEREAYDGILSFLIFLDSIQTNNI-PNISDHVTAPEVNLLLAI 116 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 Q F+EA+HS ++QYII S+ + R++ + + L + + + Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQS------RDLIYDKWRDDKVLFERNSFIAKIYQDFID 170 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + E + + + E ++FY GF L NKMVG ++ + I RDE H+ Sbjct: 171 EQSDENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLF 229 >gi|306834752|ref|ZP_07467817.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium accolens ATCC 49726] gi|304569364|gb|EFM44864.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium accolens ATCC 49726] Length = 337 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 57/334 (17%), Positives = 120/334 (35%), Gaps = 36/334 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D W + + ER + R Sbjct: 28 NWNRIWDDKDLEVWN---RLTSNFWLPEKVPLSNDRNDW---SRMDPAERDLTIRVFTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ A ++ + AF +AVH+ ++ I ++L E + + Sbjct: 82 TLLDTVQATVGEISQIQDARTEHEEAVYTNIAFMQAVHARSYSSIFSTLASTEEIEKSYA 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + P + +A + + + V + + Y GF Sbjct: 142 WAVDNPVLQQRATSVMVHY---------------YGDDPLKRKVASTLLSSLLLYAGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L K+ A+ + I+RD+++H + + +E ++ + ++ + Sbjct: 187 PLHFSVHGKLTNTADMIRLILRDKAVHGYYSGYKFQRGLDHATEDRREEMREFTFDLVRK 246 Query: 268 ATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323 LE+ Y+ E P G ++++ AN+ +G LF Y E NP Sbjct: 247 LYDLEMRYSGELYEPYGL----MDDVATFVRYNANKALMNLGYPNLFPYEECQVNPKILA 302 Query: 324 SEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G ++ WD Sbjct: 303 ALTPGSDENHDFFSGSGSSYIIGKAVETSDADWD 336 >gi|325955614|ref|YP_004239274.1| ribonucleotide reductase [Weeksella virosa DSM 16922] gi|323438232|gb|ADX68696.1| ribonucleotide reductase [Weeksella virosa DSM 16922] Length = 324 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 123/320 (38%), Gaps = 18/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + W+ +EV D + S L ER IK +L A Sbjct: 7 RINYKPFEYPEILTFTEAINKAFWVHSEVDFTADTQDFHSHLNL--AERTAIKHSLLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V IY H PE A E HS + ++ LG ++ F Sbjct: 65 QIEVAV-KTFWGDIYDHFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNDD--FQTLL 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 ++P I + ++ S + + ++ L +F ++ E + ++ FA ILS Sbjct: 122 DIPVIKGRVDYL--------SNALKDAKSSDRKSYVISLILFSILIENVSLFSQFAIILS 173 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 R M ++ + DE +H N GI ++N+IK E P +++E Q+ + ++ + Sbjct: 174 FTRFKGYMKNVSNIIAWTSVDEQIHANAGIYIVNKIKEEFPDFFSEETIQEIKNVVTHSI 233 Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325 +E +G + + +M++ + +IG ++ T P W E Sbjct: 234 EVESQILDWIFEQGEIETIKKKDLLNFMKYRVDESMLKIGFGKIYNITAEQYQPMVWFEE 293 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 + +FF R +Y + Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313 >gi|258544274|ref|ZP_05704508.1| ribonucleoside-diphosphate reductase, beta subunit [Cardiobacterium hominis ATCC 15826] gi|258520512|gb|EEV89371.1| ribonucleoside-diphosphate reductase, beta subunit [Cardiobacterium hominis ATCC 15826] Length = 325 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 66/321 (20%), Positives = 125/321 (38%), Gaps = 19/321 (5%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 Q+ P +Y E + +++W+ TE D+ +K+ +T ER + R + Sbjct: 8 RRIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYKTV--ITPRERTALTRAMLAI 65 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 + E V +YR+ PE A E H + +++ LG++ E+F+ Sbjct: 66 SQVEVSV-KRFWGDLYRYFPKPEIDDVGGTFAESEIRHKDAYSFLLEKLGMN--EMFSQI 122 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E P++ + + F + F+ L +F + E + + F I+ Sbjct: 123 TEYPALMRRIEYM---------EDFMRDKDIGRERFVLSLVMFSLFVEHISLFGQFLIIM 173 Query: 210 SLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 S + N GI+ + ++E +H FGI + I+ E+P L+T +F + + + + A Sbjct: 174 SFNKHRNLFKGISNAVEATSKEEEIHGRFGIALYGIIRDEHPRLFTPDFYDELQQLANHA 233 Query: 269 TLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMS 324 E G + + E Y+ N +G+ + W Sbjct: 234 LEAERGILRWIFEDGDLDFITLDTVENYITNRYNNSLEILGINAPYLVDTKKLRETEWFD 293 Query: 325 EVIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 294 IEILSGKEGDFFYKRSTDYSK 314 >gi|83814991|ref|YP_444284.1| ribonucleoside-diphosphate reductase, beta subunit [Salinibacter ruber DSM 13855] gi|83756385|gb|ABC44498.1| ribonucleoside-diphosphate reductase, beta subunit [Salinibacter ruber DSM 13855] Length = 324 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 72/321 (22%), Positives = 137/321 (42%), Gaps = 18/321 (5%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + L P +Y E + ++W+ E + D+ ++ TD ER +IK+ + Sbjct: 6 ERVNLKPYEYPHLLEFKTAIRQSYWVHDEFSFEGDVQDFR--VNCTDAERSVIKKTMLAI 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 A E V IY L PE + A E H + +++ LGL++ F Sbjct: 64 AQVEVAV-KTFWADIYDRLPVPEVGAVGMTFAESEVRHLDAYSHLLELLGLNDA--FERI 120 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E+P++ + + L+S TG++D ++ F + +F + E + ++ F +L Sbjct: 121 EEIPALIDRVEY-------LNSALEGTGSRD-ERAFAHSILLFSIFIEHVSLFSQFLIML 172 Query: 210 SLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 S + K G+A + ++E +H FG++++N I+ E+P + F+Q+ R EA Sbjct: 173 SFDKHEKRFKGVANAVEATSKEEQIHGLFGVELMNIIREEHPEWFGPAFEQEVRAACEEA 232 Query: 269 TLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMS 324 E G + P + +++ N + ++P+F+ W Sbjct: 233 YDAEQKVLDWIFADGELDFLPRPVVDAFLRDKFNESLKNVDVDPIFEVDPEHLGETRWFY 292 Query: 325 EVIDLKKEKNFFETRVTEYQQ 345 E + L K +FF R T Y + Sbjct: 293 EEVLLTKGNDFFSKRSTSYSK 313 >gi|222150734|ref|YP_002559887.1| ribonucleoside-diphosphate reductase minor subunit [Macrococcus caseolyticus JCSC5402] gi|222119856|dbj|BAH17191.1| ribonucleoside-diphosphate reductase minor subunit [Macrococcus caseolyticus JCSC5402] Length = 322 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 116/331 (35%), Gaps = 30/331 (9%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N + D+ + + + W+ +E + D+A WK LTDDE+ Sbjct: 6 WNTQEDMTNMF----------WRQNISQMWVESEFKVSKDIASWK---ELTDDEKFTFNH 52 Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL---D 141 L ++ A++ + I H + + E +H+ ++ +I T+L Sbjct: 53 ALAGLTGLDTHQADDGMPLIGLHTQDLRKKAVYSFMGMMEQIHAKSYSHIFTTLLPSAET 112 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 L N P + K+ + L K+A V V E F Sbjct: 113 NDLLDNWVVNEPHLKFKSEKIVSRYHKLWG-------KEATIYDQYMARVASVFLETFLF 165 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF L L +M E + I+ DES+H F ++ E ++ Sbjct: 166 YSGFYYPLYLAGQGRMTTSGEIIRKILLDESIHGVFTGLDAQSLRNEMTEDEKIRADKEM 225 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L E E +Y + + Y+Q+ N+ +G EP F+ NP Sbjct: 226 YDLLKELYANEESYTKMLYDRVGL---TEDVLNYVQYNGNKALANLGFEPYFEEKGFNPI 282 Query: 321 PWMSEVIDL-KKEKNFFETRVTEYQQGAELK 350 + ++ K +FF + Y ++ Sbjct: 283 --IENALNTSTKNHDFFSVKGDGYVIALNVE 311 >gi|149277655|ref|ZP_01883795.1| ribonucleotide-diphosphate [Pedobacter sp. BAL39] gi|149231343|gb|EDM36722.1| ribonucleotide-diphosphate [Pedobacter sp. BAL39] Length = 327 Score = 182 bits (463), Expect = 5e-44, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 127/307 (41%), Gaps = 17/307 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE D+ WKS L+ + + + KR LG ++L ++ + + Sbjct: 20 FWEQNLRQFWVDTEYIPSKDIDSWKS---LSPEIQQVYKRALGGLTLLDTLQSHTGMPKL 76 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + L EA+H+ ++ I T++ ELF+ + KA+ Sbjct: 77 LDHIDGLQNKAVLSFMCMMEAIHAKSYSTIFTTVNSTPEINELFDWVENNKLLQFKASTI 136 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 +Y + L P E L V+ E FY+GF L L +MV A+ Sbjct: 137 DKYYRALDVP-------KVSNEVLFMGLAASVLLESFLFYSGFFMPLWLAGQGQMVASAD 189 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I+ DES+H F + + + P ++ + K +L E E+ Y E + Sbjct: 190 IIKKIVADESIHGVFVGLLAQDVYKKLP--NPEKCKAKLEALLMELYENELKYTDELYTE 247 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 + ++Y+++ AN+ +G E LF+ ++ + + +FF + T Sbjct: 248 VGLTA---EVKEYVRYNANKAMMNLGFEELFEVKPINAIVLNGLNVETTQHDFFSKKSTN 304 Query: 343 YQQGAEL 349 Y++ E+ Sbjct: 305 YEKSMEV 311 >gi|213966196|ref|ZP_03394381.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] gi|213951131|gb|EEB62528.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium amycolatum SK46] Length = 334 Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 53/341 (15%), Positives = 115/341 (33%), Gaps = 31/341 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 ++ AR ++ E + N W+P +VP+ +DLA W+ LTD ER + Sbjct: 14 RKDPAARLRPINWNRVQDDKDLEVWNRLTANFWLPEKVPLSNDLADWR---RLTDLEREL 70 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 + +++ A+ ++ + AF +AVH+ ++ + ++L Sbjct: 71 TMKVFTGLTMLDTVQASVGEISQIQDARTEHEEAVYTNIAFMQAVHAKSYSSVFSTLSNT 130 Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 + + A++ L++ + + Sbjct: 131 PDIDAAYQWAVTNDILQARSKAVLKHY---------------YGDVPLKRKAAATLLSSF 175 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 Y GF L + A+ + I+RD+++H + + ++ + Sbjct: 176 SLYAGFYLPLHFASRGILTNTADMVRLILRDKAVHGYYSGYKFQRGVETYDTATQRQMKA 235 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-- 317 +L E LE+ Y+ + ++++ AN+ +G F + E Sbjct: 236 FVFELLDELYQLELRYSEALYQPLGLY---DDVANFIRYNANKALMNLGYPQRFNHDETA 292 Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 P + + +FF + Y G A+ WD Sbjct: 293 FKPEILAALTPGSDENHDFFSGSGSAYVIGKAEDTADEDWD 333 >gi|38232564|gb|AAR15079.1| ribonucleotide reductase R2 subunit variant [Aedes albopictus] Length = 219 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 22/204 (10%) Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 FN +P + KA+WAL + + Q + V + EG++F F Sbjct: 24 FNAIDNLPCVKKKADWALNWI-------------SSKQANFGERVVAFAAVEGIFFSGSF 70 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L + M G+ + I RDE LH +F + L K Q++ ++ Sbjct: 71 ASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFKY-------LVQKPSQERVIEII 123 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 EA L+E + + +P +G+N QY++F+A+R ++G++ ++ T+NPF +M E Sbjct: 124 REAVLIEQEFLTKALPVDLLGMNCELMSQYIEFVADRLLLELGIDKIYN-TKNPFSFM-E 181 Query: 326 VIDLKKEKNFFETRVTEYQQGAEL 349 I L+ + NFFE +V EYQ+ + Sbjct: 182 FISLEGKTNFFEKKVGEYQKWGVM 205 >gi|329767978|ref|ZP_08259489.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341] gi|328838463|gb|EGF88071.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341] Length = 322 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 58/311 (18%), Positives = 109/311 (35%), Gaps = 19/311 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE + D+ W L D ER K+ L ++ + + + Sbjct: 16 YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKEREAYKKVLAGLTGLDTQQGDKGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANW 161 H + + E +H+ ++ I TSL + + P + KA Sbjct: 74 SLHTEDMRKQAVYSFMGMMEQIHAKSYSTIFTSLIPSQETDYLLDEWVPSNPELQFKAKL 133 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 Y L P T L V V E FY+GF L L K+ Sbjct: 134 IEDYYMKLFKPEVPT-------YDLYMARVASVFLESYIFYSGFFYPLYLAGQGKVTTSG 186 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E + I+ DE++H +F ++ + +++ +L + E+ Y + Sbjct: 187 EIIRKILLDETIHGSFTGFDAQELFKTLTPEEQERAEKEMYKLLLDLYENELKYTKDIYD 246 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETR 339 + + + Y+++ ANR +G F+ E NP + ++ K +FF + Sbjct: 247 EIGLY---EDVKDYVEYNANRALANLGYPGYFEDKEINPI--IENAMNTNTKNHDFFSVK 301 Query: 340 VTEYQQGAELK 350 Y ++ Sbjct: 302 GDGYVVSMNVE 312 >gi|299779174|ref|YP_003734368.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage IME08] gi|298105903|gb|ADI55547.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage IME08] Length = 389 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 69/353 (19%), Positives = 140/353 (39%), Gaps = 26/353 (7%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 + N +S + + + + + + ++ E + W P EV Sbjct: 5 LTNENNMSTVFNTTPVDVLVEPMFFGSGLGIARYDIQRHKVFEELCEKQLSFFWRPEEVN 64 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + D A + N L ++ + NL + + +S+ A+ +S+P ++ Sbjct: 65 LMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQGRAPSAALQALISDPSLDTWVATW 121 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS------- 173 F E +HS ++ +I+ +L D ++F+ +I +A +Y + + Sbjct: 122 TFSETIHSRSYTHIMRNLYTDPSKVFDEILLDDAIMKRAESIGRYYDDVIDKTRLYQNAL 181 Query: 174 -----FTTGTKDADQEFLQDLFVFY---VVFEGMWFYTGFAQILSLGRA-NKMVGIAEQY 224 F+ G K A E ++ L++ E + FY FA + + M G A+ Sbjct: 182 EEYHEFSEGVKQAKYELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIM 241 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEIAYAHETM 280 ++I RDE LHL +I Q+++ +E +Q++ + E E +A Sbjct: 242 KFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEKEWATHLF 301 Query: 281 PKGFVG-LNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330 G LN + ++ ++ R Q GL P+ T +P+PW+ E ++ Sbjct: 302 KDGTCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDAPTRHPYPWIREYLNSD 354 >gi|297243045|ref|ZP_06926983.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD] gi|296889256|gb|EFH27990.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD] Length = 364 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 119/326 (36%), Gaps = 25/326 (7%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N ++ K W N W+P +VP+ +D+ W+S LTD ER R Sbjct: 55 NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 108 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++ A L H + AF +++H+ ++ I ++L E E+ Y Sbjct: 109 TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAY 167 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 R WA+ + +++ + + + + Y GF L Sbjct: 168 R----------WAVGNDVLQQRVTTVLCEYESEDPLKRKI--AATMLSSLLLYAGFYLPL 215 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 KM+ A+ + I+RD+++H + + K ++ + +L Sbjct: 216 YFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDTLY 275 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID 328 LE+ Y+ + + ++++ AN+ +G + E + P + + Sbjct: 276 DLEVEYSGQIYEGFDFHDDVF---DFVRYNANKALMNLGYPAKYSEEETHVSPEILAALS 332 Query: 329 --LKKEKNFFETRVTEYQQGAELKWD 352 + +FF + Y G ++ D Sbjct: 333 PAADENHDFFSGSGSSYIMGKSVETD 358 >gi|167947199|ref|ZP_02534273.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 241 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 80/205 (39%), Positives = 119/205 (58%), Gaps = 4/205 (1%) Query: 9 PIQAG--EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66 P+ A K VN DDKR++N +DVNQL P KY WAWE +L+A NHW P ++ M D+ Sbjct: 38 PVAAPLDTKPVNPDDKRVVNGLTDVNQLAPFKYPWAWEYFLNANKNHWTPLDINMAQDVH 97 Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126 + + LT +ER + + L + +S+ L NI LA+ +S PE + Y RQ +EEA+ Sbjct: 98 DYH--HKLTLEERHIYENVLSYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEAL 155 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 H+ T+Q+ I ++GLD+ E++N YR VP I K A + ++ +D + FL Sbjct: 156 HTWTYQHCIETIGLDQVEIYNRYRVVPEINGKIQIANRRLHSILRSDVDLSNRDELENFL 215 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSL 211 F +FEG+WFY GF+ I +L Sbjct: 216 MAYLFFAGIFEGVWFYNGFSPIFAL 240 >gi|308235083|ref|ZP_07665820.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella vaginalis ATCC 14018] gi|311115217|ref|YP_003986438.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella vaginalis ATCC 14019] gi|310946711|gb|ADP39415.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella vaginalis ATCC 14019] Length = 364 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 119/326 (36%), Gaps = 25/326 (7%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N ++ K W N W+P +VP+ +D+ W+S LTD ER R Sbjct: 55 NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 108 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++ A L H + AF +++H+ ++ I ++L E E+ Y Sbjct: 109 TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAY 167 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 R WA+ + +++ + + + + Y GF L Sbjct: 168 R----------WAVGNDVLQQRVTTVLCEYESEDPLKRKI--AATMLSSLLLYAGFYLPL 215 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 KM+ A+ + I+RD+++H + + K ++ + +L Sbjct: 216 YFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDTLY 275 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID 328 LE+ Y+ + + ++++ AN+ +G + E + P + + Sbjct: 276 DLEVEYSGQIYEGFDFHDDVF---DFVRYNANKALMNLGYPAKYSEEETHVSPEILAALS 332 Query: 329 --LKKEKNFFETRVTEYQQGAELKWD 352 + +FF + Y G ++ D Sbjct: 333 PAADENHDFFSGSGSSYIMGKSVETD 358 >gi|312130784|ref|YP_003998124.1| ribonucleotide reductase [Leadbetterella byssophila DSM 17132] gi|311907330|gb|ADQ17771.1| ribonucleotide reductase [Leadbetterella byssophila DSM 17132] Length = 324 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 119/320 (37%), Gaps = 18/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + +W+ +EV D + S L+ ER +K +L A Sbjct: 7 RINYKPFEYPEILTFTSAINKAYWVHSEVDFTADTQDFHS--HLSPAERSAVKNSLLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y H PE A E HS + ++ LG + F Sbjct: 65 QIEVAV-KTFWGNLYDHFPKPEFNGLGTTFAECEFRHSEAYSRLLEVLGYNNE--FQKLL 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E+P I + + + ++++ L +F ++ E + ++ FA ILS Sbjct: 122 EIPVIKQRVEYL--------GGVLKDTRSEDRKKYVISLILFTILIENVSLFSQFAIILS 173 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 R M ++ + DE +H N GI ++N I+ E P + E + + E+ Sbjct: 174 FTRFKGYMKNVSNIIAWTSVDEQIHANGGIYIVNTIRDEFPDFFDPETITQIEDTVRESI 233 Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325 +E +G + + +M+F + +IG PLF + P W E Sbjct: 234 EVEERILDWIFSEGEIEIIKKKDLLNFMKFRIDDSMKKIGFSPLFHVSSADYQPIAWFEE 293 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 + +FF R +Y + Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313 >gi|283782686|ref|YP_003373440.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella vaginalis 409-05] gi|283441437|gb|ADB13903.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella vaginalis 409-05] Length = 359 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 119/326 (36%), Gaps = 25/326 (7%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N ++ K W N W+P +VP+ +D+ W+S LTD ER R Sbjct: 50 NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 103 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++ A L H + AF +++H+ ++ I ++L E E+ Y Sbjct: 104 TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSE-EIDEAY 162 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 R WA+ + +++ + + + + Y GF L Sbjct: 163 R----------WAVGNDVLQQRVTTVLCEYESEDPLKRKI--AATMLSSLLLYAGFYLPL 210 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 KM+ A+ + I+RD+++H + + K ++ + +L Sbjct: 211 YFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDTLY 270 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVID 328 LE+ Y+ + + ++++ AN+ +G + E + P + + Sbjct: 271 DLEVEYSGQIYEGFDFHDDVF---DFVRYNANKALMNLGYPAKYSEEETHVSPEILAALS 327 Query: 329 --LKKEKNFFETRVTEYQQGAELKWD 352 + +FF + Y G ++ D Sbjct: 328 PAADENHDFFSGSGSSYIMGKSVETD 353 >gi|158518255|gb|AAC48087.2| Hypothetical protein F58F9.1 [Caenorhabditis elegans] Length = 500 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 19/210 (9%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L ++ + P+ + WE Y A W EV + D++ W+ LT DER Sbjct: 307 EPLLAPNNNRFVVHPIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWE---ILTSDERQF 363 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I L FFA+S+ +V N+ + E R + Q E +HS + ++ + D Sbjct: 364 ISSILAFFAASDGIVTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRD 423 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E FN I AKA+W L++ ++P + EG Sbjct: 424 DAERNILFNAITTFKFIKAKADWCLRWISDHNAP-------------FSERLAAVAAVEG 470 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 ++F + FA I L + + G+ + I Sbjct: 471 IFFSSSFAAIFWLKKRGLLPGLTHSNELIS 500 >gi|161622513|ref|YP_001595352.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage JS98] gi|160213819|gb|ABX11158.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage JS98] Length = 379 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 67/316 (21%), Positives = 129/316 (40%), Gaps = 26/316 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEELCEKQLSFFWRPEEVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A+ +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAALQALISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDEAIMK 148 Query: 158 KANWALQYTQTLSSPS------------FTTGTKDADQEFLQDLFVFY---VVFEGMWFY 202 +A +Y + + F G K A E ++ L++ E + FY Sbjct: 149 RAESIGRYYDDVIEKTRLYQNALEEYHEFGEGVKQAKYELMRSLYLCLHVINALEAIRFY 208 Query: 203 TGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEF 257 FA + + M G A+ ++I RDE LHL +I Q+++ +E Sbjct: 209 VSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQEC 268 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLE-PLFKY 315 +Q++ + E E +A G LN + ++ ++ R Q GL P+ Sbjct: 269 EQEAVDIFMEVNRQEKEWAAHLFKDGTCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDA 328 Query: 316 -TENPFPWMSEVIDLK 330 T +P+PW+ E ++ Sbjct: 329 PTRHPYPWIREYLNSD 344 >gi|295397108|ref|ZP_06807219.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] gi|294974650|gb|EFG50366.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] Length = 338 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 65/306 (21%), Positives = 111/306 (36%), Gaps = 26/306 (8%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + + W+ T +P+ +D W+ LT +ER ++ + + ++L + + Sbjct: 42 WEKLTSQFWLDTRIPVSNDRDDWR---ILTKEERDVVNKAFAGLTALDTLQSEEGANVMR 98 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163 + L F E+VH+ ++ I SL E+F+ A N L Sbjct: 99 DAVRTQHEEAVLNNILFMESVHAKSYSTIFISLNTTREIDEIFDW--------ANNNEYL 150 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 QY + + GT + V V E FY+GF L NK+ +AE Sbjct: 151 QYKARRINEIYQNGTGLQQK-------VASVFLETYLFYSGFYAPLWYLGNNKLENVAEI 203 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + I+RDES+H + + E + +L + E Y E + Sbjct: 204 IKLIIRDESVHGTYLGYKFQLGYNQLSIDEQNELKDWMYALLFDLMENEEKYTEEIYTQ- 262 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK--YTENPFPWMSEVIDLK-KEKNFFETRV 340 VG ++ + AN+ +G EP + EN P + I +FF Sbjct: 263 -VGWTKE-VNTFVHYNANKALQNLGFEPFYPDGTAENVNPIVMNGISTDSSNHDFFSQVG 320 Query: 341 TEYQQG 346 Y G Sbjct: 321 NSYLMG 326 >gi|9629834|ref|NP_045318.1| ribonucleotide reductase subunit 2 [Bovine herpesvirus 1] gi|266916|sp|Q01319|RIR2_BHV1C RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|330772|gb|AAA46063.1| ribonucleotide reductase small subunit [Bovine herpesvirus 1] gi|995642|emb|CAA90928.1| UL40 [Bovine herpesvirus 1] gi|1149578|emb|CAA88899.1| UL40 [Bovine herpesvirus 1] gi|2653307|emb|CAA06093.1| ribonucleotide reductase small subunit [Bovine herpesvirus type 1.1] Length = 314 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 72/320 (22%), Positives = 122/320 (38%), Gaps = 38/320 (11%) Query: 38 KYGWAWE--------KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 KY + +E + N W+ TE P+ DD L+ E + F Sbjct: 13 KYKYFYETECPDLDHLRSLSVANRWLETEFPLADDAKD---VARLSGAELEFYRFLFAFL 69 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + + Y + Q E VHS + I L ++ Y Sbjct: 70 SAADDLVNVNL-GDLSELFTQKDILHYYIEQESIEVVHSRVYSAIQLLLFRNDAVARAGY 128 Query: 150 RE----VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 E P++ K +W + + A E + + +V ++ EG++F + F Sbjct: 129 VEGALGDPAVRRKVDWLER--------------RVAAAESVAEKYVLMILIEGIFFSSSF 174 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRTM 264 A I L N V + I RDE++H + N + E P + + Sbjct: 175 AAIAYLRTHNLFVVTCQTNDLISRDEAVHTAASCCIFDNYLGGERP------PPARIYEL 228 Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 EA L A P+G L+ + Y+++ A+R I L PLF + Sbjct: 229 FREAWKL-SASLFGCAPRGSHILDVEAISAYVEYSADRLLAAIQLPPLFGTPPPGTDFPL 287 Query: 325 EVIDLKKEKNFFETRVTEYQ 344 ++ +K NFFE R T Y Sbjct: 288 ALMTAEKHTNFFERRSTNYT 307 >gi|294669615|ref|ZP_06734682.1| hypothetical protein NEIELOOT_01516 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308528|gb|EFE49771.1| hypothetical protein NEIELOOT_01516 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 296 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 53/256 (20%), Positives = 102/256 (39%), Gaps = 23/256 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P E+ + D + + L + E+ + NL + +S+ Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEIDVSRDRIDYAN---LPEHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ + I A Sbjct: 90 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVQNEYIIA 149 Query: 158 KANWALQYTQTLSSPS-----FTTGTKDA-----------DQEFLQDLFVFYVVFEGMWF 201 +A Y L + GT + ++ L + V E + F Sbjct: 150 RAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVTVSLRELKKKLYLCLMCVNVLEAIRF 209 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEF 257 Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E Sbjct: 210 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNLMRAGVDDPEMAEIAVEL 269 Query: 258 QQKSRTMLHEATLLEI 273 Q + + +A E Sbjct: 270 QDECFKLFKKAAEQEK 285 >gi|238695377|ref|YP_002922570.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage JS10] gi|220029513|gb|ACL78447.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage JS10] Length = 379 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 67/316 (21%), Positives = 130/316 (41%), Gaps = 26/316 (8%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEELCEKQLSFFWRPEEVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A+ +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAALQALISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDEAIMK 148 Query: 158 KANWALQYTQTLSSPS------------FTTGTKDADQEFLQDLFVFY---VVFEGMWFY 202 +A +Y + + F+ G K A E ++ L++ E + FY Sbjct: 149 RAESIGRYYDDVIEKTRLYQNALEEYHEFSEGVKQAKYELMRSLYLCLHVINALEAIRFY 208 Query: 203 TGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----TKEF 257 FA + + M G A+ ++I RDE LHL +I Q+++ +E Sbjct: 209 VSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQEC 268 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLE-PLFKY 315 +Q++ + E E +A G LN + ++ ++ R Q GL P+ Sbjct: 269 EQEAVDIFMEVNRQEKEWAGHLFKDGTCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDA 328 Query: 316 -TENPFPWMSEVIDLK 330 T +P+PW+ E ++ Sbjct: 329 PTRHPYPWIREYLNSD 344 >gi|298253146|ref|ZP_06976938.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1] gi|297532541|gb|EFH71427.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1] Length = 331 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 55/328 (16%), Positives = 115/328 (35%), Gaps = 29/328 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N ++ K W N W+P +VP+ +D+ W+S LTD ER R Sbjct: 22 NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 75 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 ++ A L H + AF +++H+ ++ I ++L E E + Sbjct: 76 TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSEEIDEAYR 135 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + + L ++ E + + + Y GF Sbjct: 136 WAVGNDVLQQRVTTVLCEYES---------------EDPLKRKIAATMLSSLLLYAGFYL 180 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM+ A+ + I+RD+++H + + K ++ + +L Sbjct: 181 PLYFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDT 240 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEV 326 LE+ Y+ + + ++++ AN+ +G + E + P + Sbjct: 241 LYDLEVEYSGQIYEGFDFHDDVF---DFVRYNANKALMNLGYPAKYSEEETHVSPEILAA 297 Query: 327 ID--LKKEKNFFETRVTEYQQGAELKWD 352 + + +FF + Y G ++ D Sbjct: 298 LSPAADENHDFFSGSGSSYIMGKSVETD 325 >gi|328958552|ref|YP_004375938.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] gi|328674876|gb|AEB30922.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] Length = 318 Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 67/325 (20%), Positives = 131/325 (40%), Gaps = 31/325 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + W+K A + W+ T VP+ +DLA W+ L+ E+ +IK+ +G Sbjct: 9 NWNKIEDELDDYVWDK---ATSQFWLDTRVPISNDLADWR---ELSSVEQEVIKKVVGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFN 147 A ++L + V A+ + + L F E++H+ ++ I+TSL E+++ Sbjct: 63 ALLDTLQSEKGVNAMREDVRTHKEAAILNNFLFMESIHAKSYGTILTSLNSIKSINEIYD 122 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +QY + + TG + + + EG+ +Y+ F Sbjct: 123 WMNN--------DERMQYKAKRINDIYKTGNALQKK-------IASIFLEGILYYSNFFA 167 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L +NK+ +AE + I+RDES+H + E P + +L + Sbjct: 168 PLWYRGSNKLANLAELIKLIIRDESVHGTYLGYKFQLTYNELPEEEQNKLLDWMYPLLED 227 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWM 323 E+AY E + A + ++++ AN+ +G + + NP M Sbjct: 228 LMENELAYTEEIYSHIGI---AEDVKTFVRYNANKSLQNMGFPAYYDNADLADVNPIV-M 283 Query: 324 SEVIDLKKEKNFFETRVTEYQQGAE 348 + + +FF Y G Sbjct: 284 NGISIETSNHDFFSQVGAGYLMGDA 308 >gi|30984468|ref|NP_851900.1| ribonucleotide reductase subunit 2 [Macacine herpesvirus 1] gi|28804676|dbj|BAC58080.1| ribonucleotide reductase small subunit [Cercopithecine herpesvirus 1] gi|30844282|gb|AAP41458.1| small subunit of ribonucleotide reductase [Macacine herpesvirus 1] Length = 338 Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 129/350 (36%), Gaps = 36/350 (10%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKY------GWAWEKYLSACNNHWMPTEVPM 61 +P A +++ + A + V P +Y + N W+ +E+ Sbjct: 5 APTDAAVPGGSLERREPAGAAAAVTP-DPERYFYTTQCPDINHLRSLSILNRWLESELVF 63 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D +GLTDDE + F ++++ LV N+ + + Y + Q Sbjct: 64 AGDEED---VHGLTDDELNFYRFLFTFLSAADDLVTENL-GGLSGLFPQKDILHYYVEQE 119 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSITAKANWALQYTQTLSSPSFTTG 177 E VHS + I L + + Y P+I K W Q Sbjct: 120 AIEVVHSRVYSIIQLVLFHNNEQARREYVSRTIHHPAIRVKVEWLEARVQAC-------- 171 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 E + + F+ ++ EG++F FA I L N + + I RDE++H Sbjct: 172 ------ESVPEKFILMILIEGIFFAASFAAIGFLRTNNLLRVTCQSNDLISRDEAVHTTA 225 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA---PSCEQ 294 + N + K ++ + EA +EI + P L+A + E Sbjct: 226 SCYIYNNYLGGH----RKPTAERVYRLFREAVDIEIGFIRSQAPANSRVLDAAALDAIEN 281 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 Y++F A+R I ++PLF + ++ +K NFFE R T Y Sbjct: 282 YVRFSADRLLVLIKMKPLFGAPAPAPSFPLSLMSTEKHTNFFECRSTAYA 331 >gi|269121363|ref|YP_003309540.1| ribonucleoside-diphosphate reductase [Sebaldella termitidis ATCC 33386] gi|268615241|gb|ACZ09609.1| Ribonucleoside-diphosphate reductase [Sebaldella termitidis ATCC 33386] Length = 331 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 125/308 (40%), Gaps = 17/308 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE D+ W N L + R K+ LG ++L ++ + + Sbjct: 20 FWEQNLKQFWIDTEYIPSKDIDSW---NSLEQEMREAYKKALGGLTLLDTLQSHTGMPKV 76 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 H+ + + + L E +H+ ++ I T++ E+FN +E + KA Sbjct: 77 IDHIDSLQNKSVLSYMCMMETIHAKSYSTIFTTVATTPEINEIFNWVQENEYLQFKARTI 136 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L KDA E + V+ E FY+GF L L +M + Sbjct: 137 DSYYRKLDK-------KDATDEEIFMALSSSVLLETFLFYSGFFLPLWLAGQGQMGASCD 189 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I+ DES+H F + + + + ++ + +++ E+ Y E + Sbjct: 190 IIKKIIADESIHGVFVGLLAQEFFKKFTPEDQQRIEKNLKELMYVLYENELKYTDEVYTE 249 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341 + ++Y+++ AN+ +G + F+ E NP ++ + + +FF + T Sbjct: 250 IGLS---GDVKEYIRYNANKALMNLGFDEEFEVKEVNPIV-LNGLNVETTQHDFFSKKST 305 Query: 342 EYQQGAEL 349 Y++ E+ Sbjct: 306 NYEKALEI 313 >gi|317495971|ref|ZP_07954333.1| ribonucleotide reductase [Gemella moribillum M424] gi|316913875|gb|EFV35359.1| ribonucleotide reductase [Gemella moribillum M424] Length = 322 Score = 179 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 58/315 (18%), Positives = 107/315 (33%), Gaps = 27/315 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE + D+ W L D ER K+ L ++ + + + Sbjct: 16 YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKERDAYKKVLAGLTGLDTQQGDKGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANW 161 H + + E +H+ ++ I TSL + + + KA Sbjct: 74 SLHTEDMRKQAVYSFMGMMEQMHAKSYSTIFTSLIPSKETDYLLDEWVPNNEELQYKAQL 133 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 Y + L V V E FY+GF L L K+ Sbjct: 134 IESYY-------LKLFKPEVPTYDLYMARVASVFLESYIFYSGFFYPLYLAGQGKLTTSG 186 Query: 222 EQYQYIMRDESLHLNF----GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 E + I+ DE++H +F ++ + E KE T+L + E+ Y Sbjct: 187 EIIRKILLDETIHGSFTGFDAQEIFKTLTPEEQEKANKEM----YTLLLDLYENELKYTK 242 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNF 335 + + + + Y+++ ANR +G F+ E NP + ++ K +F Sbjct: 243 DIYGEIGL---FEEVKDYVEYNANRALANLGYPGYFEDKEINPI--IENAMNTSTKNHDF 297 Query: 336 FETRVTEYQQGAELK 350 F + Y ++ Sbjct: 298 FSVKGDGYVVSMNVE 312 >gi|68161126|gb|AAY86994.1| ribonucleotide reductase M2b [Ictalurus punctatus] Length = 192 Score = 179 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 25/214 (11%) Query: 132 QYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 +I + D E FN +P + KA+WALQ+ D + F + Sbjct: 1 SLLINTYIRDLKERDYLFNAIETLPYVKRKADWALQWI------------SDTNSTFAER 48 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 L F V EG++F FA I L + M G+ + I RDE LH NF + +Q++ Sbjct: 49 LVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTYSNELISRDEGLHCNFACLIYSQLQK- 106 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 K + + ++ +A +E + E +P +G+N+ +QY++F+A+R +G Sbjct: 107 ------KPSADRVKDIITKAVRIEQEFLTEALPVDLIGINSYLMKQYIEFVADRLLTDLG 160 Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342 + +++ ENPF +M E I L+ + NFFE RV E Sbjct: 161 IPKVYE-AENPFDFM-EFISLEGKTNFFEKRVAE 192 >gi|241888586|ref|ZP_04775893.1| ribonucleoside-diphosphate reductase, beta subunit [Gemella haemolysans ATCC 10379] gi|241864609|gb|EER68984.1| ribonucleoside-diphosphate reductase, beta subunit [Gemella haemolysans ATCC 10379] Length = 322 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 58/311 (18%), Positives = 109/311 (35%), Gaps = 19/311 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE + D+ W L D ER K+ L ++ + + + Sbjct: 16 YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKEREAYKKVLAGLTGLDTQQGDKGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANW 161 H + + E +H+ ++ I TSL + + P + KA Sbjct: 74 SLHTEDMRKQAVYSFMGMMEQIHAKSYSTIFTSLIPSQETDYLLDEWVPSNPELQYKAKL 133 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 Y L P T L V V E FY+GF L L K+ Sbjct: 134 IEDYYMKLFKPEVPT-------YDLYMARVASVFLESYIFYSGFFYPLYLAGQGKVTTSG 186 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E + I+ DE++H +F ++ + +++ +L + E+ Y + Sbjct: 187 EVIRKILLDETIHGSFTGFDAQEVFKTLTAEEQERAEKEMYKLLLDLYENELVYTKDIYS 246 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETR 339 + + + Y+++ ANR +G F+ E NP + ++ K +FF + Sbjct: 247 EIGLY---EEVKDYVEYNANRALANLGYPGYFEDKEINPI--IENAMNTNTKNHDFFSVK 301 Query: 340 VTEYQQGAELK 350 Y ++ Sbjct: 302 GDGYVVSMNVE 312 >gi|88861512|ref|ZP_01136127.1| ribonucleotide-diphosphate reductase beta subunit [Pseudoalteromonas tunicata D2] gi|88816487|gb|EAR26327.1| ribonucleotide-diphosphate reductase beta subunit [Pseudoalteromonas tunicata D2] Length = 219 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 14/222 (6%) Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 H + +++ ++G+ E E ++ + + + K ++ ++ ++ Sbjct: 1 HVAAYSHLLDTIGMPESE-YSAFMKYKEMKDKYDYM------------QGFNVNSKEDIA 47 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + VF EG+ + FA +L+ R NKM G+ + + +RDE+LH N I + + Sbjct: 48 KTVAVFSAFTEGLQLFASFAILLNFPRHNKMKGMGQIVTWSVRDETLHCNSMIRIFKEFI 107 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCH 305 ENP +WT +++ E A+ G GL A + Y++FIANRR Sbjct: 108 KENPEIWTPTLKKELYEACRIIVEHEDAFIDLAFEMGPMEGLTAQEVKDYIRFIANRRLI 167 Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 Q+GLEP++ +NP W+ +++ + NFFE R TEY + + Sbjct: 168 QLGLEPIYDVQKNPLTWLDTMLNAVEHMNFFEGRATEYSKAS 209 >gi|88801652|ref|ZP_01117180.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter irgensii 23-P] gi|88782310|gb|EAR13487.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter irgensii 23-P] Length = 424 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 66/323 (20%), Positives = 133/323 (41%), Gaps = 18/323 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 L P Y E + +++W+ TE D+ +K+ L++ E+ IK + + Sbjct: 107 RLNLKPYDYPALTEYVDAIRHSYWIHTEFNYTSDIQDFKAY--LSETEKSAIKNTMLAIS 164 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V IY+ + PE A E H + +++ LGL+ F + Sbjct: 165 QIEVAV-KTFWGDIYKKMPKPEIGAVGSTFAESEVRHHDAYSHLLEILGLNNE--FENLK 221 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + P + + N+ + + ++EF + + +F + E + ++ F I++ Sbjct: 222 KNPVMMRRVNYL--------EGALKNVKSEDNKEFSESIILFSLFIEHVSLFSQFLIIMA 273 Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + N + GI+ + ++E +H +FGID+I IK ENP + ++ + M EA Sbjct: 274 FNKHKNVLKGISNVVEATSKEEQIHGDFGIDIIKIIKEENPDWFDEDHSLMVQEMCEEAF 333 Query: 270 LLEIAYAHETMPKGFVGLNAPSC-EQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325 + E KG + + +++++ N+ IG+ +F+ W + Sbjct: 334 ISESKIIDWIFEKGELDFLPKNVIKEFIKNRFNKSLGSIGIAKIFEIDATLLAQTDWFDD 393 Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348 I K +FF R Y + + Sbjct: 394 EIIGTKHGDFFVKRSINYSKRTK 416 >gi|332031690|gb|EGI71130.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex echinatior] Length = 210 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 22/211 (10%) Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 LFN +P + KANWAL + + + V + EG++F Sbjct: 7 RDFLFNAIETLPCVRKKANWALNWINH-------------ESATFPERVVAFAAVEGIFF 53 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 FA I L + M G+ + I RDE LH +F + H+ K ++ Sbjct: 54 SGSFAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFK-------HIVQKPSFERV 106 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 ++++ +A +E + + +P +G+N Y++F+A+R +G E ++ +ENPF Sbjct: 107 KSIVMDAVEIEKEFLTQALPVELIGMNRTFMCNYIEFVADRLFVALGFEKVYN-SENPFS 165 Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 +M I + + NFFE +V EY++ ++ D Sbjct: 166 FMD-FISMMGKTNFFEKKVGEYKKFGVMEED 195 >gi|326783253|ref|YP_004323801.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33] gi|310005200|gb|ADO99589.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33] Length = 296 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 70/281 (24%), Positives = 113/281 (40%), Gaps = 24/281 (8%) Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 +S+ +A + S PE +L F E +HS ++ YII ++ D E+F+ Sbjct: 1 MLDSVQGRGPGMAFIPYCSLPELEASMLVWEFMEMIHSRSYTYIIKNVYPDPSEVFDTIL 60 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGT-----------------KDADQEFLQDLFVFY 193 E I +A+ + + + T + + L Sbjct: 61 EDEKILDRASSVTESYDDFINHAHQYDTSTMWELAKDGHYAGQFDRRELKRKLYRAVANV 120 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE---NP 250 + EG+ FYT FA + G M G A+ I RDES HL +++N+ + Sbjct: 121 NILEGIRFYTSFACSFAFGENKLMEGSAKILSLIARDESQHLVLTQNILNKWRDGDDPEM 180 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGL 309 + KE Q +M A E +A G +GLN Y+++IANRR I + Sbjct: 181 DIIAKEEQSWVMSMFQRAVDEEKMWAEYLFKNGSMIGLNERLLHNYVEWIANRRMKAICI 240 Query: 310 EPLF--KYTENPFPWMSEVIDLKKEKNF-FETRVTEYQQGA 347 +P+F NP PW ++ K ++N ET + Y G Sbjct: 241 KPMFDIPAKNNPLPWTEHWLNSKGQQNAPQETEIESYVIGG 281 >gi|241895721|ref|ZP_04783017.1| ribonucleotide-diphosphate reductase subunit beta [Weissella paramesenteroides ATCC 33313] gi|241871088|gb|EER74839.1| ribonucleotide-diphosphate reductase subunit beta [Weissella paramesenteroides ATCC 33313] Length = 318 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 63/314 (20%), Positives = 114/314 (36%), Gaps = 29/314 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + W+ T +P+ +DL W+ +T+ E ++ G ++L + + + ++ Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KMTEQEHYLVGHVFGGLTLLDTLQSQDGMASLK 78 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163 + L F E+VH+ ++ I +L E+F+ + KAN Sbjct: 79 QATRTQHELAVLNNIEFMESVHAKSYSSIFETLHTPAEIDEIFDWTNSNEFLQYKANRIN 138 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 Q Q S V E FY+GF L NK+ +AE Sbjct: 139 QVYQNGSQLQRKV---------------ASVFLETFLFYSGFYTPLWYLGHNKLNNVAEI 183 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + I+RDES+H + E E + +L + E Y + Sbjct: 184 IKLILRDESVHGTYIGYKFQLGFNELSTDEQNELKTWLYDLLLDLYGNEEKYTKLLYDE- 242 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340 +G S ++++ AN+ +G +PLF NP M+ + +FF Sbjct: 243 -IGWT-ESVLTFLRYNANKALMNLGQDPLFPDGAEDVNPIV-MNGISTTTSNHDFFSQVG 299 Query: 341 TEYQQGA--ELKWD 352 Y+ G ++ D Sbjct: 300 NGYRLGQVEAMEDD 313 >gi|325284717|ref|YP_004264180.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus MRP] gi|324316206|gb|ADY27320.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus MRP] Length = 348 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 108/305 (35%), Gaps = 22/305 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y + W P E+P+ +D +WKS L++ ER + ++L + A+ Sbjct: 24 FYEKYTSQLWFPEEIPLSNDAIVWKS---LSEAERWTYIHASAGLNALDTLQGEVGMPAL 80 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWA 162 + + + Q E +H+ ++ + + +E E+F R P + K Sbjct: 81 RHLVDGHIRKATIQFQGMMEDIHAKSYSLMNKTFLTTSEEREVFEWVRTQPQLQNKIAMI 140 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + D L V + E FY+GF L L +MV E Sbjct: 141 REIYDN----------PDVSNLGLWKKMVVSCMLETALFYSGFFYPLYLAGQGRMVSAGE 190 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I+ DE++H + + + E L + E+AY Sbjct: 191 IFNLIIMDEAVHGVYVALLAQEKFAEMNEAEQAYALAWYEETLMKLYRNELAYTEMLYAD 250 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340 + ++++++ N +G+E F+ E NP + I K +FF + Sbjct: 251 VGL---VDEVKKFIRYNCNVLADNLGVERSFEDEEINPI--VRNGIKAKGTTHDFFSAKG 305 Query: 341 TEYQQ 345 Y + Sbjct: 306 NSYAK 310 >gi|38638230|ref|NP_944413.1| ribonucleotide reductase subunit 2 [Psittacid herpesvirus 1] gi|81987371|sp|Q6UDJ1|RIR2_PSHV1 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|34500236|gb|AAQ73719.1| unknown [Psittacid herpesvirus 1] Length = 313 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 64/309 (20%), Positives = 120/309 (38%), Gaps = 24/309 (7%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 E + N+W E+ D + LT+DE K F A+++ LV N Sbjct: 18 PDMRELRDLSIANNWNEFELCYARDEKD---VDCLTEDECDFYKFVFCFLAAADDLVNVN 74 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSI 155 + + + + Y Q E VHS T+ + ++ + Y + +I Sbjct: 75 L-DNLVTLFPQKDIQHYYAEQIRIETVHSRTYSAVQLVFFRNDAIARDRYVLEAVKDGAI 133 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K +W + + D+ L + ++ ++ EG++F + FA I L R + Sbjct: 134 RRKIDWLSRIQN------------EGDELTLPEKYILMILIEGIFFVSSFAAISYLRRHS 181 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 + I RDE++H + N +P K ++ + EA +E + Sbjct: 182 IFQVTCQSNDLISRDETIHTTASCCIYNNWLKGHP----KPSVKRIHQLFKEAVEIECDF 237 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 PK ++ + + +++F ANR IG+ ++ + ++ L+K NF Sbjct: 238 LVARAPKAARLIDIDAIQSFVRFTANRWLSMIGVPTIYDDPAPDPTFPLALMSLEKNVNF 297 Query: 336 FETRVTEYQ 344 FE R T Y Sbjct: 298 FEHRSTAYS 306 >gi|330858746|ref|YP_004415121.1| putative ribonucleotide reductase B subunit [Shigella phage Shfl2] gi|327397680|gb|AEA73182.1| putative ribonucleotide reductase B subunit [Shigella phage Shfl2] Length = 389 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 124/326 (38%), Gaps = 36/326 (11%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMK 148 Query: 158 KANWALQYTQTLSSPSFT-------------------------TGTKDADQEFLQDLFVF 192 +A +Y + + TK A + L Sbjct: 149 RAESIGRYYDDVLVKTREYQNAVEDYEGILSEGFRKEELGKVVECTKRALMKSLYLCLHV 208 Query: 193 YVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 E + FY FA + + M G A+ ++I RDE LHL +I Q+++ Sbjct: 209 INALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDG 268 Query: 252 LW----TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQ 306 +E +Q++ + E E +A G V LN S ++ ++ R Q Sbjct: 269 DEWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQ 328 Query: 307 IGLE-PLFKY-TENPFPWMSEVIDLK 330 GL P+ ++P+PW+ E ++ Sbjct: 329 CGLPCPITDAPVKHPYPWIREYLNSD 354 >gi|94985875|ref|YP_605239.1| ribonucleotide-diphosphate reductase subunit beta [Deinococcus geothermalis DSM 11300] gi|94556156|gb|ABF46070.1| Ribonucleoside-diphosphate reductase [Deinococcus geothermalis DSM 11300] Length = 319 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 59/305 (19%), Positives = 105/305 (34%), Gaps = 25/305 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y+ W E+P+ D A W+ L+ ER R + ++L + + Sbjct: 19 FYIQQQAQLWFSEEIPIASDAADWR---ALSPAERTCYTRVSAGLNAMDTLQGEVGMPLL 75 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162 + + + L AF E VH+ ++ + +E E F P + K Sbjct: 76 AAGEDDHQRKATLAMFAFMENVHARSYSMANKTFLSASEEREAFEWIEMQPHLQRK---- 131 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 T + ++ + + E FY+GF L L KM + E Sbjct: 132 -----------ITVFRRLYEEGDALTRMLASCLLETALFYSGFFYPLYLAGQGKMSHMGE 180 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I DE+LH ++ + + P + + + E E AY E + Sbjct: 181 VFTLICADEALHGSYVGLLFQERFAALPQGEQAAVRARFEQLAREFYENECAYTDEVYAE 240 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV- 340 + A + ++++ N C +GLE LF E NP +FF + Sbjct: 241 VGL---ASEVKTFVRYNFNICCDNLGLERLFPEEEVNPLVLNGIRATGGTTHDFFSIKGA 297 Query: 341 TEYQQ 345 Y + Sbjct: 298 GGYAK 302 >gi|47213105|emb|CAF89525.1| unnamed protein product [Tetraodon nigroviridis] Length = 198 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 22/197 (11%) Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 P KA+WAL + + + V + EG++F FA I L Sbjct: 10 PHRWKKADWALNWIGNQ-------------KASYGERVVAFAAVEGIFFSGSFAAIFWLK 56 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 + M G+ + I RDE LH +F + HL K Q ++ A +E Sbjct: 57 KRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLLHKPSAQTVGAIIRNAVEIE 109 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + E +P +G+N ++Y++F+A+R ++G ++ ENPF +M E I L+ + Sbjct: 110 QEFLTEALPVKLIGMNCQLMKRYIEFVADRLLLELGFAKIY-RAENPFDFM-ENISLEGK 167 Query: 333 KNFFETRVTEYQQGAEL 349 NFFE RV EYQ+ + Sbjct: 168 TNFFEKRVGEYQRMGVM 184 >gi|17567153|ref|NP_508269.1| hypothetical protein F19G12.2 [Caenorhabditis elegans] gi|10864352|gb|AAG24065.1| Hypothetical protein F19G12.2 [Caenorhabditis elegans] Length = 668 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 103/230 (44%), Gaps = 25/230 (10%) Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFT 175 E +HS + ++ + D+ E FN I AKA+W L++ ++P Sbjct: 443 TIIAVENIHSEMYAKLLEAYIRDDAERNILFNAITTFKFIKAKADWCLRWISDHNAP--- 499 Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 + + EG++F + FA I L + + G+ + I LH Sbjct: 500 ----------FSERLAAFAAVEGIFFSSSFAAIFWLKKRGLLPGLTHSNELISM-FLLHP 548 Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295 N N + K + + +++E+ L+E + E++P +G+N +Y Sbjct: 549 NCFFSTFNLQRR------RKPAESRITEIINESVLVEQDFVRESLPTNLIGMNQHMMCKY 602 Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ++F+A+ ++G + T+NPF +M E I ++ + NFFE RV+EYQ+ Sbjct: 603 VEFVADLLLEELGYSKRYN-TKNPFDFM-ENISIEGKTNFFEKRVSEYQR 650 >gi|319440691|ref|ZP_07989847.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium variabile DSM 44702] Length = 335 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 55/331 (16%), Positives = 117/331 (35%), Gaps = 30/331 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W+ +N W+P ++P+ +DL W+ L+DDER + R Sbjct: 26 NWNRIEDAKDLEVWQ---RLTSNFWLPEKMPLSNDLPDWR---ALSDDERTLTARVFTGL 79 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ A ++ + AF +AVH+ ++ + +++ Sbjct: 80 TLLDTVQATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCS--------- 130 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 I WA+ + + D + + + + Y GF L Sbjct: 131 --SAEIEDAYTWAIDNRRLQPRATAVMAHYAGDDPLKRKV--ASTLLSSLLLYAGFYLPL 186 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 M+ A+ + I+RD+++H + + +P E + + E Sbjct: 187 WYSSRGVMMNTADMIRLILRDKAVHGYYSGYKYQRGLDAHPERV-AEMEDFTYRFTAELL 245 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 LE Y+ + G + + ++ + A++ +G P ++ P + Sbjct: 246 ALENEYSRDLYSLGSLDYAG--VDAFVHYNADKALMNLGYGPQYEDAAAGVEPEIIAALT 303 Query: 327 IDLKKEKNFFETRVTEYQQGA-----ELKWD 352 D + +FF + Y G E WD Sbjct: 304 PDSSETHDFFSGSGSSYVMGRAEVTEEDDWD 334 >gi|76163066|gb|AAX30834.2| SJCHGC08068 protein [Schistosoma japonicum] Length = 230 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 19/205 (9%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 + ++ + +L L P++Y W Y A + W EV + D W+S L Sbjct: 33 SKDEIELEPLLKPNPHRFVLFPIEYHDIWHFYKKAVASFWTVEEVDLSKDFTHWES---L 89 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134 ER I L FFA+S+ +V N++ + + PE R + Q E +HS + + Sbjct: 90 KVGERHFISYVLAFFAASDGIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLL 149 Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 I + D E FN + + KA WAL + + + V Sbjct: 150 IDTYIKDSKERDFLFNAISNLTCVAKKAQWALDWI-------------GDSKSTFAERLV 196 Query: 192 FYVVFEGMWFYTGFAQILSLGRANK 216 + EG++F FA I L + Sbjct: 197 AFAAVEGVFFSGSFAAIFWLKSEDL 221 >gi|329769048|ref|ZP_08260470.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325] gi|328839539|gb|EGF89115.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325] Length = 322 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 58/311 (18%), Positives = 110/311 (35%), Gaps = 19/311 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W+ TE + D+ W L D ER K+ L ++ + + + Sbjct: 16 YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKERDAYKKVLAGLTGLDTQQGDKGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANW 161 H + + E +H+ ++ I TSL + + + KAN Sbjct: 74 SLHTEDMRKQAVYSFMGMMEQMHAKSYSTIFTSLIPSKETDYLLDEWVPNNAELQYKANL 133 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 Y L P T L V V E FY+GF L L K+ Sbjct: 134 IESYYMKLFKPEVKT-------YDLYMARVASVFLESYIFYSGFFYPLYLAGQGKVTTSG 186 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E + I+ DE++H +F +I ++ +++ +L + E+ Y + Sbjct: 187 EIIRKILLDETIHGSFTGFDAQEIFKTLTKEEQEKAKKEMYKLLLDLYENELKYTQDIYG 246 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETR 339 + + + Y+++ ANR +G F+ + NP + ++ K +FF + Sbjct: 247 EIGLY---DEVKDYVEYNANRALANLGYPGYFEDKDINPI--IENAMNTSTKNHDFFSVK 301 Query: 340 VTEYQQGAELK 350 Y ++ Sbjct: 302 GDGYVVSMNVE 312 >gi|312865304|ref|ZP_07725532.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] gi|311099415|gb|EFQ57631.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] Length = 316 Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats. Identities = 68/307 (22%), Positives = 120/307 (39%), Gaps = 28/307 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A W+ T VP+ +DL WK L+D E+ ++K+ +G A ++L + + AI Sbjct: 20 WDKATAQFWLDTRVPVSNDLLDWKQ---LSDLEKTVVKKAVGGLALLDTLQSEEGLYAIK 76 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL 163 ++ + F E++H+ T+ I+ SL D +++ P + KA Sbjct: 77 KNARTQKELAVFSDFNFMESIHAKTYGTILISLNTFKDIEAIYDWMDNDPRMQFKAQRVN 136 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 Y Q S + V + EG+ +Y+ F L NK+ +AE Sbjct: 137 DYYQNGSPLQ---------------VMVASIFLEGILYYSNFFIPLWYRGQNKLANLAEL 181 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + ++RDES+H + Q E +FQ+ L E E AY E Sbjct: 182 IKLVIRDESVHGTYLGYKFRQGFDELSPEDQADFQKWMYGFLDELLENEFAYTEEVYSDI 241 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFETR 339 + + ++++ AN+ +G F+ NP M+ + +FF Sbjct: 242 GLE---DDIKTFVKYNANKSLQNMGFGIYFENATANDVNPIV-MNGISIETANHDFFSQV 297 Query: 340 VTEYQQG 346 Y G Sbjct: 298 GAGYLMG 304 >gi|124487872|gb|ABN12019.1| putative ribonucleotide reductase R2 subunit [Maconellicoccus hirsutus] Length = 249 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 24/233 (10%) Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYRE 151 +V +N+V + + PE R + Q +HS + +I SL D E FN Sbjct: 1 IVNDNLVKRFSQEVQVPEARAFFGFQISNAGIHSEMYSVLIESLIKDANEKNLIFNTIET 60 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 VP + K +W L+ D+ V + EG++F G A I L Sbjct: 61 VPCVKKKKDWVLRRIAD-------------DRVTFPLKVVAFATVEGIFFAGGAAAIFWL 107 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 M G+ + I + ESL+ +F + + L + ++ ++ EA ++ Sbjct: 108 QEKGVMPGLTLSNELIRKGESLYTDFACLLFKR-------LVQRPSVEEITEIIREAVII 160 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 E ++ + +P +G++ Y++F+A+R + +F NPF +M Sbjct: 161 EQEFSTKGLPVSLIGMDCELMTTYIEFVADRLLQALNCPKVFGV-PNPFGFME 212 >gi|295398337|ref|ZP_06808379.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] gi|294973476|gb|EFG49261.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] Length = 317 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 70/309 (22%), Positives = 125/309 (40%), Gaps = 28/309 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A W+ T VP+ +DL WK L+ E+ ++K+ +G A ++L + + A+ Sbjct: 20 WDKATAQFWLDTRVPVSNDLLEWK---KLSTMEKEIVKKAVGGLALLDTLQSEEGLYALK 76 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL 163 +H + R L F E++H+ T+ I+ SL D E+++ P + KA Sbjct: 77 KHARTQKERAVLSNFMFMESIHAKTYGTILISLNTFKDIEEIYDWMNNDPMMQFKAEKI- 135 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + + GT + V V EG+ +Y+ F L NK+ +AE Sbjct: 136 -------NNIYQNGTPIQVK-------VASVFLEGILYYSNFFIPLWYRGQNKLANLAEL 181 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + ++RDES+H + Q E + F Q + L E E A+ E + Sbjct: 182 IKLVIRDESVHGTYLGYKFRQDFEELTQDEQEAFTQWMYSFLEELLEKEFAFTEELYTEI 241 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNFFETR 339 + A + ++++ AN+ +G F+ NP M+ + +FF Sbjct: 242 GL---AEDIKTFVKYNANKSLQNMGFGIYFENALAKDVNPIV-MNGISIETSNHDFFSQV 297 Query: 340 VTEYQQGAE 348 Y G Sbjct: 298 GAGYLMGNA 306 >gi|9632793|ref|NP_049841.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage T4] gi|1172940|sp|P11156|RIR2_BPT4 RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Protein B2; AltName: Full=Ribonucleotide reductase gi|5354417|gb|AAD42624.1|AF158101_211 NrdB aerobic NDP reductase, small subunit [Enterobacteria phage T4] gi|15342|emb|CAA27757.1| small subunit B2 [Enterobacteria phage T4] gi|299780589|gb|ADJ39951.1| aerobic NDP reductase small subunit [Enterobacteria phage T4T] Length = 388 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 67/350 (19%), Positives = 130/350 (37%), Gaps = 36/350 (10%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNH-WMPTEVPMQDDLALWKSKN 72 V+V ++ M ++ +E+ + + W P EV + D A + N Sbjct: 7 TNPVDVLNEPMFFGSGLGLARYDIQRHRVFEELIERQISFFWRPEEVNLMMDAAQF---N 63 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L ++ + NL + + +S+ + +S+P ++ F E +HS ++ Sbjct: 64 KLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYT 123 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT------------------------ 168 +I+ +L D ++F+ +I +A +Y Sbjct: 124 HIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLVKTREWENAKDMVEYYKDQGLI 183 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYI 227 L+ K + L E + FY FA + + M G A+ ++I Sbjct: 184 LADKDVEQRAKRDLMKSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFI 243 Query: 228 MRDESLHLNFGIDVINQIKIENPHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 RDE LHL +I Q++ +E +Q++ + E E +A G Sbjct: 244 ARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDG 303 Query: 284 FVG-LNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330 V LN S ++ ++ R Q GL P+ ++P+PW+ E ++ Sbjct: 304 DVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYLNSD 353 >gi|269866693|ref|XP_002652360.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220062665|gb|EED41696.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 211 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 28/220 (12%) Query: 130 TFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 + +I +L D+ E FN +PSI KA WA ++ A Sbjct: 1 MYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWI--------------ASDTSF 46 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V + EG++F FA I L + M G+ + I RDE LH +F + I Sbjct: 47 DTRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYIN 106 Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306 + ++ EA +E + E++P +G+N QY++F+A+R Sbjct: 107 NKCT---------VIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFA 157 Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 +G + ++ + NPF +M E I L+ + NFFE R YQ+G Sbjct: 158 LGEKKIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 195 >gi|228861159|ref|YP_002854182.1| ribonucleotide reductase B subunit [Enterobacteria phage RB51] gi|227438833|gb|ACP31145.1| ribonucleotide reductase B subunit [Enterobacteria phage RB51] Length = 392 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 65/329 (19%), Positives = 124/329 (37%), Gaps = 39/329 (11%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMK 148 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF----------------------------LQDL 189 +A +Y + + AD E+ L Sbjct: 149 RAESIGRYYDDVIEKTRYWQNAKADIEYQKEINADEDDIKDAIEHEMYWKRELMRSLYLC 208 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 E + FY FA + + M G A+ ++I RDE LHL +I Q+++ Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLG 268 Query: 249 NPHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303 KE +Q++ + E E +A G V LN S ++ ++ R Sbjct: 269 TDGDEWVKIAKECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSR 328 Query: 304 CHQIGLE-PLFKY-TENPFPWMSEVIDLK 330 Q GL P+ ++P+PW+ E ++ Sbjct: 329 MKQCGLPCPITDAPVKHPYPWIREYLNSD 357 >gi|32709431|gb|AAP86734.1| NrdB [Enterobacteria phage T2H] Length = 392 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 64/329 (19%), Positives = 125/329 (37%), Gaps = 39/329 (11%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMK 148 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQD----------------------------L 189 +A +Y + + AD E+ ++ Sbjct: 149 RAESIGRYYDDVIEKTRYWQNAKADIEYKKEINADEDDIKDAIEHEMYWKRELMRSLYLC 208 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 E + FY FA + + M G A+ ++I RDE LHL +I Q+++ Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLG 268 Query: 249 NPHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303 KE +Q++ + E E +A G V LN S ++ ++ R Sbjct: 269 TDGDEWVKIAKECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSR 328 Query: 304 CHQIGLE-PLFKY-TENPFPWMSEVIDLK 330 Q GL P+ ++P+PW+ E ++ Sbjct: 329 MKQCGLPCPITDAPVKHPYPWIREYLNSD 357 >gi|32709437|gb|AAP86737.1| NrdB [Enterobacteria phage TuIa] Length = 391 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 64/328 (19%), Positives = 122/328 (37%), Gaps = 38/328 (11%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEELIEKSLSFFWRPEEVNLMLDSAQF---NKLPQFQQDIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + LS+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMALLSDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF---------------------------LQDLF 190 +A +Y + + + E L Sbjct: 149 RAESIGKYYDDVLVKTRHWENAKENYECSIGSCQQNDIEMYEEIMFNAKHDLMKSLYLCL 208 Query: 191 VFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 E + FY FA + + M G A+ ++I RDE LHL +I Q++ Sbjct: 209 HVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGT 268 Query: 250 PHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRC 304 KE +Q++ + E E +A G +N S ++ ++ R Sbjct: 269 DGDEWVQIAKECEQEAVDIFMEVNSQEKEWAAHLFKDGTCPGINTQSMCAFVDYLTVSRM 328 Query: 305 HQIGLE-PLFKY-TENPFPWMSEVIDLK 330 Q GL P+ T++P+PW+ E ++ Sbjct: 329 KQCGLPCPITDAPTKHPYPWIREYLNSD 356 >gi|10957415|ref|NP_051641.1| ribonucleotide-diphosphate reductase subunit beta [Deinococcus radiodurans R1] gi|6460844|gb|AAF12548.1|AE001826_17 ribonucleoside-diphosphate reductase, beta chain [Deinococcus radiodurans R1] Length = 354 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 55/305 (18%), Positives = 106/305 (34%), Gaps = 22/305 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y + W P E+P+ +D WK+ L+D+ER + ++L + + Sbjct: 43 FYAKYTSQLWFPEEIPLTNDALAWKT---LSDEERWTYIHASAGLNALDTLQGEVGMPRL 99 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162 + + L Q E +H+ ++ + + +E E+F R P + K Sbjct: 100 RDLVDGHIRKATLQFQGMMEDIHARSYSLMNKTFLTASEEREVFEWVRTQPQLQHKIAVI 159 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 + D + V + E FY+GF L L +MV E Sbjct: 160 QGVYRD----------PDVSDLGVWKKLVVSCMLETALFYSGFFYPLYLAGQGQMVSAGE 209 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282 + I+ DE+LH + + + + Q L E+AY + Sbjct: 210 IFNLIILDEALHGVYVALLAQEKFATMNAAEQADAQAWFDDTLQALYSNELAYTEQLYAN 269 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340 + +++++F N + L F + NP + I + +FF + Sbjct: 270 VGL---TGEVKKFIRFNFNVLADNLALPRPFGDEDINPI--VQNGIQARGTTHDFFSAKG 324 Query: 341 TEYQQ 345 + Y + Sbjct: 325 SSYSK 329 >gi|260102934|ref|ZP_05753171.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus DSM 20075] gi|111610216|gb|ABH11600.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus helveticus CNRZ32] gi|260083260|gb|EEW67380.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus DSM 20075] Length = 340 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 59/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 24 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ A+ +A ++ + AF AVH+ ++ I ++L E Sbjct: 81 FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E ++ A+A + Y TG + + G Y Sbjct: 141 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 185 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF L K+ A+ + I+RD+ +H + + E ++ Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 245 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 L + LE Y HE + + A + +G + F E +P Sbjct: 246 FLDKLIDLEKKYLHELYGD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 302 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + + +FF + Y G + WD Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339 >gi|48696469|ref|YP_024511.1| putative ribonucleotide reductase minor subunit [Staphylococcus phage K] gi|37729163|gb|AAO47530.1| ORF81 [Staphylococcus phage K] gi|119658118|gb|ABL87153.1| putative ribonucleotide reductase minor subunit [Staphylococcus phage 812] gi|182627942|gb|ACB89104.1| gp ORF111 [Staphylococcus phage A5W] Length = 349 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 59/311 (18%), Positives = 108/311 (34%), Gaps = 18/311 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + + W P E + DL+ W N LT+ E+ K+ L ++ + + Sbjct: 32 YWEQGISQFWTPEEFDVSRDLSSW---NSLTESEKNTYKKVLAGLTGLDTKQGGEGMNLV 88 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANW 161 H P+ + E +H+ ++ +I T+L ++ + E + KA + Sbjct: 89 SYHEPRPKYQAVFAFMGGMEEIHAKSYSHIFTTLLSNKETSYLLDTWVEENDFLKVKAQF 148 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 Y L P+ T + V E FY+GF L L +M Sbjct: 149 IGYYYDQLLKPNPTIFDR-------YMAKVASAFLESALFYSGFYYPLLLAGRGQMTQSG 201 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 I +DE+ H + K+ +++ +L E+AY H Sbjct: 202 AIIYKITQDEAYHGSAVGLTAQYDYNLLTEEEKKQADKETYELLDILYTNEVAYTHSLYD 261 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340 + Y+Q+ NR +G E F NP +D + +FF + Sbjct: 262 PLELS---EDVINYVQYNFNRALQNLGREDYFNPEPYNPIVENQTNVDRLRNVDFFSGK- 317 Query: 341 TEYQQGAELKW 351 +Y++ +K Sbjct: 318 ADYEKSTNIKD 328 >gi|328464295|gb|EGF35725.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus helveticus MTCC 5463] Length = 335 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 59/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ A+ +A ++ + AF AVH+ ++ I ++L E Sbjct: 76 FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E ++ A+A + Y TG + + G Y Sbjct: 136 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 180 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF L K+ A+ + I+RD+ +H + + E ++ Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 L + LE Y HE + + A + +G + F E +P Sbjct: 241 FLDKLIDLEKKYLHELYGD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + + +FF + Y G + WD Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334 >gi|161508077|ref|YP_001578044.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus helveticus DPC 4571] gi|160349066|gb|ABX27740.1| ribonucleoside-diphosphate reductase [Lactobacillus helveticus DPC 4571] Length = 340 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 59/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 24 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ A+ +A ++ + AF AVH+ ++ I ++L E Sbjct: 81 FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E ++ A+A + Y TG + + G Y Sbjct: 141 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 185 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF L K+ A+ + I+RD+ +H + + E ++ Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 245 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 L + LE Y HE + + A + +G + F E +P Sbjct: 246 FLDKLIDLEKKYLHELYGD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYISPE 302 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + + +FF + Y G + WD Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339 >gi|238852996|ref|ZP_04643394.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 202-4] gi|282851729|ref|ZP_06261093.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 224-1] gi|238834391|gb|EEQ26630.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 202-4] gi|282557132|gb|EFB62730.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 224-1] Length = 335 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 76 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E ++ A+A + Y TG + + G Y Sbjct: 136 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 180 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF L K+ A+ + I+RD+ +H + + E ++ Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 L + LE Y HE + + A + +G + F E +P Sbjct: 241 FLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + + +FF + Y G + WD Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334 >gi|293380788|ref|ZP_06626833.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 214-1] gi|290922652|gb|EFD99609.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 214-1] Length = 335 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 76 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E ++ A+A + Y TG + + G Y Sbjct: 136 EAHEWVVNNDTLQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 180 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF L K+ A+ + I+RD+ +H + + E ++ Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 L + LE Y HE + + A + +G + F E +P Sbjct: 241 FLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G + WD Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETTDDDWD 334 >gi|256849455|ref|ZP_05554887.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus crispatus MV-1A-US] gi|262046124|ref|ZP_06019087.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus MV-3A-US] gi|256713571|gb|EEU28560.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus crispatus MV-1A-US] gi|260573454|gb|EEX30011.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus MV-3A-US] Length = 335 Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 76 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E ++ A+A + Y TG + + G Y Sbjct: 136 EAHEWVVNNDTLQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 180 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF L K+ A+ + I+RD+ +H + + E ++ Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 L + LE Y HE + + A + +G + F E +P Sbjct: 241 FLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + + +FF + Y G + WD Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334 >gi|300362830|ref|ZP_07059004.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus gasseri JV-V03] gi|300353120|gb|EFJ68994.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus gasseri JV-V03] Length = 340 Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 24 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 81 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E ++ A+A + Y TG + + G Y Sbjct: 141 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 185 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF L K+ A+ + I+RD+ +H + + E ++ Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 245 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 L + LE Y HE + + A + +G + F E +P Sbjct: 246 FLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYISPE 302 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + + +FF + Y G + WD Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339 >gi|225869037|ref|YP_002744985.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus equi subsp. zooepidemicus] gi|225702313|emb|CAX00111.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus equi subsp. zooepidemicus] Length = 337 Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 112/322 (34%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + NQL K W N W+P +VP+ +DL W+S L +D + +I R Sbjct: 28 NWNQLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF A+H+ ++ I ++L + E + Sbjct: 82 TLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHD 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ +A + Y TG + + G Y GF Sbjct: 142 WVVSTESLQERARVLIPYY---------TGNDPLKSKVAAAMMP------GFLLYGGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM ++ + I+RD+ +H + Q E + +L++ Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFVFDLLYQ 246 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E A ++ + A + +G + F E +P + Sbjct: 247 LIDLEKAYLRELYDG---FDLADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325 >gi|312984313|ref|ZP_07791656.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus CTV-05] gi|310894278|gb|EFQ43357.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus CTV-05] Length = 335 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 76 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E ++ A+A + Y TG + + G Y Sbjct: 136 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 180 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF L K+ A+ + I+RD+ +H + + E ++ Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 L + LE Y HE + + A + +G + F E +P Sbjct: 241 FLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGYDTPFTAEETYISPE 297 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + + +FF + Y G + WD Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334 >gi|228473186|ref|ZP_04057941.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275336|gb|EEK14128.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga gingivalis ATCC 33624] Length = 319 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 117/320 (36%), Gaps = 23/320 (7%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + W+ +EV D+ +KS L+ E+ +KR L A Sbjct: 7 RENYKPFEYPEVMKFVDMMHQTFWVHSEVEFTADIQDFKS--NLSLVEKEAVKRALLGIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y PE A E HS + ++ LG + F Sbjct: 65 QVEVAV-KTFWGDLYDVFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNNE--FEALL 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 EVP + +Y + ++ + F ++ E ++ FA ILS Sbjct: 122 EVPIFKERNTILKEY------------LAKNRENAMERILFFTLIIENASLFSQFATILS 169 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 R M +A + DE +H N GI ++ I ENP TK ++++ + E Sbjct: 170 FTRFKGYMKNVANIIAWTSVDEQVHANAGIYILKTIFDENPEFRTKA-KKEATEFIREYI 228 Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325 LLE +G + + YM++ + Q+ L F T P W E Sbjct: 229 LLEDKMLDWIFEEGELEFFSKKDLANYMRYRLDDALTQLDLGKPFGITAEEAKPMLWFEE 288 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 + + + +FF R T Y + Sbjct: 289 EVFVNELDDFFAKRPTAYTK 308 >gi|195977665|ref|YP_002122909.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974370|gb|ACG61896.1| ribonucleotide reductase of class Ib (aerobic) beta subunit NrdF [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 337 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 112/322 (34%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + NQL K W N W+P +VP+ +DL W+S L +D + +I R Sbjct: 28 NWNQLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF A+H+ ++ I ++L + E + Sbjct: 82 TLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHD 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ +A + Y TG + + G Y GF Sbjct: 142 WVVSTESLQERARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM ++ + I+RD+ +H + Q E + +L++ Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFVFDLLYQ 246 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E A ++ + A + +G + F E +P + Sbjct: 247 LIDLEKAYLRELYDG---FDLADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325 >gi|256820037|ref|YP_003141316.1| ribonucleotide reductase [Capnocytophaga ochracea DSM 7271] gi|315225453|ref|ZP_07867266.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea F0287] gi|256581620|gb|ACU92755.1| ribonucleotide reductase [Capnocytophaga ochracea DSM 7271] gi|314944551|gb|EFS96587.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea F0287] Length = 319 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 72/320 (22%), Positives = 120/320 (37%), Gaps = 23/320 (7%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y E + + W+ +EV D+ +KS LT E+ +KR L A Sbjct: 7 RENYKPFEYPEVMEFVNAMHKSFWVHSEVEFTADIQDFKS--ELTPVEKEAVKRALLGIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y PE A E HS + ++ LG + F Sbjct: 65 QVEVSV-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLL 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 EVP ++N +Y + ++ + F ++ E ++ FA ILS Sbjct: 122 EVPVFKERSNVLKEY------------LAKNRENAMERILFFTLIIENASLFSQFATILS 169 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 R + +A + DE LH N GI ++ +I ENP + K ++ + T + Sbjct: 170 FTRFKGFLKNVANIIAWTSVDEQLHANAGIYILKKIFEENPEMKAKA-EEDATTFIRSYI 228 Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSE 325 LE +G + + YM++ + Q+GL F + P W E Sbjct: 229 TLEDKMLDWIFEQGELEFFSKKDLSNYMRYRLDDSLTQLGLGKPFGISGEEAKPMMWFEE 288 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 + + +FF R T Y + Sbjct: 289 EVFSNELDDFFAKRPTAYTK 308 >gi|227878534|ref|ZP_03996468.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus JV-V01] gi|227861868|gb|EEJ69453.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus JV-V01] Length = 352 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 36 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 92 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 93 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 152 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E ++ A+A + Y TG + + G Y Sbjct: 153 EAHEWVVNNDTLQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 197 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF L K+ A+ + I+RD+ +H + + E ++ Sbjct: 198 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 257 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 L + LE Y HE + + A + +G + F E +P Sbjct: 258 FLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 314 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G + WD Sbjct: 315 VFAQLSAQADENHDFFSGNGSSYVMGTGEETTDDDWD 351 >gi|294338139|emb|CBJ93977.1| Probable ribonucleotide reductase (small subunit) [Campylobacter phage CP220] Length = 369 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 70/308 (22%), Positives = 131/308 (42%), Gaps = 16/308 (5%) Query: 37 LKYGWAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 +KY +E W EV D A + N L + + R L +S+ Sbjct: 31 IKYP-IFETLFKKMAGFDWQEDEVQCTKDQADF---NVLNEAMKHSYTRVLNKLIFLDSI 86 Query: 96 VANNIVLAIYRHLSNPECRQYLLR-QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 ++ I ++NPE + Q FE + HS ++ +I+ S+ + ++F+ E+P Sbjct: 87 QGRGLLQTIGSIVTNPELEVCMTEWQRFEISRHSRSYTHILRSVYANPSKIFDESFEIPE 146 Query: 155 ITAKANWALQ-YTQTLSSPS-FTTGTKDADQEFLQ--DLFVFYVVFEGMWFYTGFAQILS 210 + A+ + Y + + + + G D ++ ++ ++ V + EG+ FY+GFA I S Sbjct: 147 LLELADSISKPYEEAFEAVTKYHLGLIDTEEVKVKVLNMLVEINILEGVRFYSGFATIWS 206 Query: 211 LG-RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE---FQQKSRTMLH 266 + M + Q I RDE+LHL ++I + + + Sbjct: 207 MHYSQGLMERTGKILQLICRDENLHLAITQNLIKILSRSPEEGFINAWNSIKDNITDRYL 266 Query: 267 EATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMS 324 EA E + KG F+G+ + Y++++ N+R IG + +F +NP PW+ Sbjct: 267 EAADQEFKWIDYLFSKGAFLGMTPELAKNYIKYLINKRLKAIGFKEVFAGFNKNPIPWVE 326 Query: 325 EVIDLKKE 332 I+ K Sbjct: 327 TYINYDKN 334 >gi|116326446|ref|YP_803166.1| ribonucleotide reductase B subunit [Enterobacteria phage RB32] gi|32709425|gb|AAP86731.1| NrdB [Enterobacteria phage RB32] gi|115344039|gb|ABI95048.1| ribonucleotide reductase B subunit [Enterobacteria phage RB32] Length = 392 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 64/329 (19%), Positives = 123/329 (37%), Gaps = 39/329 (11%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELTEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFTTGT----------------------------KDADQEFLQDL 189 +A +Y + + K A + L Sbjct: 149 RAESIGRYYDDVLVKTREWENAKEFVELAKESPDADFRLNRAIKQEAEAKCALMKSLYLC 208 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 E + FY FA + + M G A+ ++I RDE LHL +I Q++ Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSG 268 Query: 249 NPHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303 +E +Q++ + E E +A G V LN S ++ ++ R Sbjct: 269 TDGDEWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSR 328 Query: 304 CHQIGLE-PLFKY-TENPFPWMSEVIDLK 330 Q GL P+ ++P+PW+ E ++ Sbjct: 329 MKQCGLPCPITDAPVKHPYPWIREYLNSD 357 >gi|225869986|ref|YP_002745933.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus equi subsp. equi 4047] gi|225699390|emb|CAW92836.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus equi subsp. equi 4047] Length = 337 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 112/322 (34%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + NQL K W N W+P +VP+ +DL W+S L +D + +I R Sbjct: 28 NWNQLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF A+H+ ++ I ++L + E + Sbjct: 82 TLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHD 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ +A + Y TG + + G Y GF Sbjct: 142 WVVSTESLQERARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM ++ + I+RD+ +H + Q E + +L++ Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFVFDLLYQ 246 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E A ++ + A + +G + F E +P + Sbjct: 247 LIDLEKAYLRELYDG---FDLADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325 >gi|322411231|gb|EFY02139.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 337 Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 111/322 (34%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L K W N W+P +VP+ +DL W+S L +D + +I RN Sbjct: 28 NWNHLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRNYTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF A+H+ ++ I ++L E E Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHE 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ +A + Y TG + + G Y GF Sbjct: 142 WVVSTQSLQERARVLIPYY---------TGNDPLKSKVAAAMMP------GFLLYGGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM ++ + I+RD+ +H + Q E + +L+E Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAGLSPEKQTEMKTFVFDLLYE 246 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E A ++ + A + +G E F E +P + Sbjct: 247 LIDLEKAYLKELYDG---FDLAEDAIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQ 303 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325 >gi|217071966|gb|ACJ84343.1| unknown [Medicago truncatula] Length = 206 Score = 172 bits (436), Expect = 7e-41, Method: Composition-based stats. Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 23/214 (10%) Query: 7 LSPIQAGEK---RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 + ++ G R ++ +L ++ + P++Y WE Y A + W EV + Sbjct: 1 MGSLENGTPKKIREEETEEPILMKQTQRFCMFPVRYKQLWEMYKKAEASFWTAEEVDLSY 60 Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 D+ W + L+D E+ I L FFA+S+ +V N+ + PE R + Q Sbjct: 61 DVQHWAT---LSDSEKHFISHVLAFFATSDGIVLENLAARFLNDVQIPEARAFYGFQIAI 117 Query: 124 EAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 E +HS + ++ + D E FN +P + KA WAL + + Sbjct: 118 ENIHSEMYSLLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWINS------------ 165 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + V + EG++F L Sbjct: 166 --STSFAERLVGFACVEGIFFSEASVPYFGLKER 197 >gi|323467364|gb|ADX71051.1| Ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus helveticus H10] Length = 340 Score = 172 bits (436), Expect = 7e-41, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 31/337 (9%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 24 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 81 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E ++ A+A + Y TG + + G Y Sbjct: 141 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 185 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF L K+ A+ + I+RD+ +H + + E ++ Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFN 245 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 L + LE Y HE + + A + +G + F E +P Sbjct: 246 FLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGYDSPFTAEETYISPE 302 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + + +FF + Y G + WD Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339 >gi|146329200|ref|YP_001209518.1| ribonucleotide reductase, beta subunit [Dichelobacter nodosus VCS1703A] gi|146232670|gb|ABQ13648.1| ribonucleotide reductase, beta subunit [Dichelobacter nodosus VCS1703A] Length = 325 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 69/320 (21%), Positives = 130/320 (40%), Gaps = 19/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 Q+ P +Y E + +++W+ TE D+ +K+ ++D ER + R++ + Sbjct: 9 RIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYKT--AISDAERTALTRSMLAIS 66 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y + E A E H + +++ LG++ ELF Sbjct: 67 QIEVSV-KRFWGDLYHYFPKAEIDDVGGTFAESEVRHKDAYSFLLEQLGMN--ELFTQIT 123 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +P++ A+ + +F +QE + L +F + E + + F ++S Sbjct: 124 HIPALMARIEYM---------EAFMRNKDKNNQELVLSLVLFSLFVEHISLFGQFLIMMS 174 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + N GI+ + ++E +H FGI + + IK E+P L+T F +T+ +A Sbjct: 175 FNKYRNLFKGISNAVEATSKEEEIHGRFGIALYHIIKEEHPDLFTDSFYHHLKTLADQAL 234 Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325 E + G + + E Y+ N +G+E + E W Sbjct: 235 AAERGILNWIFENGDLPFLQQKTVENYIVNRYNNSLSVLGIESPYTVDEERLKETQWFDI 294 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 I KE +FF R T+Y + Sbjct: 295 EILSGKENDFFYKRSTDYSK 314 >gi|255325476|ref|ZP_05366578.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium tuberculostearicum SK141] gi|255297414|gb|EET76729.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium tuberculostearicum SK141] Length = 362 Score = 172 bits (435), Expect = 9e-41, Method: Composition-based stats. Identities = 62/361 (17%), Positives = 128/361 (35%), Gaps = 35/361 (9%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 +N+ L+ I D + A + N++ K W N W+P +VP+ Sbjct: 26 SNSAELTSISVTPPSYRHDPSARIRA-INWNRVSDDKDLEVWN---RLTANFWLPEKVPL 81 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 +DL W+ +T +ER + R + +++ A + + A Sbjct: 82 SNDLPAWQ---KMTPEERNLTMRVFTGLTTLDTVQATVGEICQIQDARTEHEEAVYTNIA 138 Query: 122 FEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 F ++VH+ ++ + ++L + E + + A+A L + Sbjct: 139 FMQSVHARSYSSVFSTLSSTKEIDEAYRWAVNNDLLQARAKKVLAHY----------FGP 188 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D + + + ++ Y GF L + A+ + I+RD+++H + Sbjct: 189 DPLKRKVSSTLLSSLLL-----YAGFYLPLHFSVHATLTNTADMIRLILRDKAVHGYYSG 243 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + L KE + ++L E LE+ Y+ E + ++++ Sbjct: 244 YKYQRGLESTTPLRQKEMHDFTISLLEELYALELDYSGELYEPLGL---MDDVAVFVRYN 300 Query: 300 ANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKW 351 AN+ +G F E NP + + +FF + Y G ++ W Sbjct: 301 ANKALMNLGYPDYFPPEETEVNPEILAALAPGADENHDFFSGSGSSYVIGTAEETSDDDW 360 Query: 352 D 352 D Sbjct: 361 D 361 >gi|294338336|emb|CBJ94375.1| Probable ribonucleotide reductase (small subunit) [Campylobacter phage CPt10] Length = 369 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 126/308 (40%), Gaps = 16/308 (5%) Query: 37 LKYGWAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 +KY +E W EV D A + N L + + R L +S+ Sbjct: 31 IKYP-IFETLFKKMAGFDWQEDEVQCTKDQADF---NVLNEAMKHSYTRVLNKLIFLDSI 86 Query: 96 VANNIVLAIYRHLSNPECRQYLLR-QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154 ++ I ++NPE + Q FE + HS ++ +I+ S+ + ++F+ E+P Sbjct: 87 QGRGLLQTIGSIVTNPELEVCMTEWQRFEISRHSRSYTHILRSVYANPSKIFDESFEIPV 146 Query: 155 ITAKANWA----LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 + A+ + + ++ + + + ++ + + EG+ FY+GFA I S Sbjct: 147 LLELADSISKPYEEAFEAVTKYHLGLIDIEDVKVKVLNMLIEINILEGVRFYSGFATIWS 206 Query: 211 LG-RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE---FQQKSRTMLH 266 + M + Q I RDE+LHL ++I + + + Sbjct: 207 MHYSQGLMERTGKILQLICRDENLHLAITQNLIKILSRSPEEGFINAWNSIKDNITDRYL 266 Query: 267 EATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMS 324 EA E + KG F+G+ + Y++++ N+R IG + +F +NP PW+ Sbjct: 267 EAADQEFKWIDYLFSKGAFLGMTPELAKNYIKYLINKRLKAIGFKEVFAGFNKNPIPWVE 326 Query: 325 EVIDLKKE 332 I+ K Sbjct: 327 TYINYDKN 334 >gi|291290450|dbj|BAI83245.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage AR1] Length = 392 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 64/329 (19%), Positives = 123/329 (37%), Gaps = 39/329 (11%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF----------------------------LQDL 189 +A +Y + + AD E+ L Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLC 208 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 E + FY FA + + M G A+ ++I RDE LHL +I Q++ Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSG 268 Query: 249 NPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303 +E +Q++ + E E +A G V LN S ++ ++ R Sbjct: 269 TDGDQWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSR 328 Query: 304 CHQIGLE-PLFKY-TENPFPWMSEVIDLK 330 Q GL P+ ++P+PW+ E ++ Sbjct: 329 MKQCGLPCPITDAPVKHPYPWIREYLNSD 357 >gi|172039808|ref|YP_001799522.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium urealyticum DSM 7109] gi|171851112|emb|CAQ04088.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium urealyticum DSM 7109] Length = 334 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 118/323 (36%), Gaps = 32/323 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W L N W+P +VP+ +DL W N L+D ER + R Sbjct: 26 NWNRVQDEKDLEVW---LRLTANFWLPEKVPLSNDLPDW---NRLSDLERTLTMRVFTGL 79 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A ++ + AF +AVH+ ++ + ++L + ++ Sbjct: 80 TLLDTMQATVGEISQIQDALTEHEEAVYTNIAFMQAVHARSYSSVFSTLSSTPAINDAYD 139 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + + + L + E V + + Y GF Sbjct: 140 WAVKNEVLQTRCRKVLVHY---------------FGEDPLKRKVSATLLSSVLLYAGFYL 184 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L + A+ + I+RD+++H + + +P E + +L E Sbjct: 185 PLHFSTRGVLSNTADMIRLILRDKAVHGYYSGYKFQRGIERHPE-RAAELSDFTHELLEE 243 Query: 268 ATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323 LE+ Y+ E P G E+++++ AN+ +G P++ +E +P Sbjct: 244 LYQLELEYSTELYEPFGL----MADVERFVKYNANKALMNLGYTPIYPGSETSVSPEILS 299 Query: 324 SEVIDLKKEKNFFETRVTEYQQG 346 + + +FF + Y G Sbjct: 300 ALTPGADENHDFFSGSGSSYIIG 322 >gi|331703804|ref|YP_004400491.1| ribonucleoside diphosphate reductase 2 betachain [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256383837|gb|ACU78407.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256384668|gb|ACU79237.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455270|gb|ADH21505.1| ribonucleoside-diphosphate reductase, beta subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328802359|emb|CBW54513.1| Ribonucleoside diphosphate reductase 2 betachain [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 339 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 58/326 (17%), Positives = 115/326 (35%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W N W+P ++P+ +DL+ W+S L+ + + ++ R Sbjct: 30 NWNVINDEKDLEVWN---RITQNFWLPEKIPVSNDLSSWRS---LSSEWQQLVTRTFTGL 83 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A H + AF VH+ ++ I ++L E E Sbjct: 84 TLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 143 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + ++ +A + Y TGT + L G Y GF Sbjct: 144 WVVKTETLQKRAKALIPYY---------TGTDPLKSKVAAALMP------GFLLYGGFYL 188 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L K+ ++ + I+RD+ +H + + + P E ++ +L+E Sbjct: 189 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLPVEKQAEMKEFVFKLLYE 248 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E + ++ + A + +G + F E P + Sbjct: 249 LIDLETAYLKELYAGFDI---VDDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 305 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + +FF + Y G ++ Sbjct: 306 LSARADENHDFFSGNGSSYVMGVSVE 331 >gi|32709423|gb|AAP86730.1| NrdB [Enterobacteria phage RB27] Length = 392 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 64/329 (19%), Positives = 123/329 (37%), Gaps = 39/329 (11%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF----------------------------LQDL 189 +A +Y + + AD E+ L Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLC 208 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 E + FY FA + + M G A+ ++I RDE LHL +I Q++ Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSG 268 Query: 249 NPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303 +E +Q++ + E E +A G V LN S ++ ++ R Sbjct: 269 TDGDQWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSR 328 Query: 304 CHQIGLE-PLFKY-TENPFPWMSEVIDLK 330 Q GL P+ ++P+PW+ E ++ Sbjct: 329 MKQCGLPCPITDAPVKHPYPWIREYLNSD 357 >gi|251781888|ref|YP_002996190.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390517|dbj|BAH80976.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126699|gb|ADX23996.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 337 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 110/322 (34%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L K W N W+P +VP+ +DL W+S L +D + +I R Sbjct: 28 NWNHLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRTYTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF A+H+ ++ I ++L E E Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHE 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ +A + Y TG + + G Y GF Sbjct: 142 WVVSTQSLQERARVLIPYY---------TGNDPLKSKVAAAMMP------GFLLYGGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM ++ + I+RD+ +H + Q E + +L+E Sbjct: 187 PFYLSARGKMSNTSDIIRLILRDKVIHNYYSGYKYQQKVAGLSPEKQAEMKTFVFDLLYE 246 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E A ++ + A + +G E F E +P + Sbjct: 247 LIDLEKAYLKELYDG---FDLAEDAIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQ 303 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325 >gi|56807592|ref|ZP_00365501.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus pyogenes M49 591] Length = 311 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 109/322 (33%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L K W N W+P +VP+ +DL W+S L +D + +I R Sbjct: 2 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 55 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF +H+ ++ I ++L E E Sbjct: 56 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 115 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ +A + Y TG + + G Y GF Sbjct: 116 WVVSTQSLQDRARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 160 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM ++ + I+RD+ +H + Q E + +L+E Sbjct: 161 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 220 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E A ++ + A + +G E F E +P + Sbjct: 221 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYESPFTDEETRVSPEVFAQ 277 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 278 LSARADENHDFFSGNGSSYVMG 299 >gi|171779436|ref|ZP_02920400.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282053|gb|EDT47484.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 316 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 76/338 (22%), Positives = 134/338 (39%), Gaps = 34/338 (10%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 MLN + + + W+K A W+ T VP+ +DL W+ L+D E+ ++K Sbjct: 1 MLNKTMNWQLIEDELDEYVWDK---ATAQFWLDTRVPVSNDLLDWR---KLSDMEKEVVK 54 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLD 141 + +G A ++L + + A+ ++ + R L F E++H+ T+ I+ SL D Sbjct: 55 KAVGGLALLDTLQSEEGLYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKD 114 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 E++N + KA + + GT + V V EG+ + Sbjct: 115 IEEIYNWMNNDRRMQFKARKI--------NEIYQNGTP-------MQVKVASVFLEGILY 159 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+ F L NK+ +AE + ++RDES+H + Q E + F Sbjct: 160 YSNFFIPLWYRGQNKLANLAELIKLVIRDESVHGTYLGYKFRQDFNELAITEQENFTNWM 219 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---- 317 + L E E AY E + + + ++++ AN+ +G + FK Sbjct: 220 YSFLEELLDNEFAYTEEVYSEIGL---VEDIKTFVKYNANKSLQNMGFDIYFKDASANDV 276 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE---LKWD 352 NP M+ + +FF Y G L D Sbjct: 277 NPIV-MNGISIETANHDFFSQVGAGYLMGEAEEMLDDD 313 >gi|146301802|ref|YP_001196393.1| ribonucleotide reductase [Flavobacterium johnsoniae UW101] gi|146156220|gb|ABQ07074.1| ribonucleotide reductase [Flavobacterium johnsoniae UW101] Length = 324 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 123/320 (38%), Gaps = 18/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + + +W+ TEV D + L+ E+ +K +L A Sbjct: 7 RVNYKPFEYPEVLQFTEAINKAYWVHTEVDFTADTQDFH--AHLSLAEKTAVKNSLLAIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V + IY H PE A E HS + ++ LG ++ F Sbjct: 65 QIEVAV-KSFWGNIYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDE--FEKLL 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 +VP I + ++ S +++++ L +F ++ E + ++ FA +LS Sbjct: 122 DVPVIRRRVDYL--------SNVLKDTKSQDNRKYMVSLILFSILIENVSLFSQFAILLS 173 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 R M ++ + DE +H N GI +IN+I+ E P + +E R + ++ Sbjct: 174 FTRFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDYFDEETLALVRETVKDSI 233 Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325 +E +G + + +M+F + QI + +F + W E Sbjct: 234 AVESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIPVIFDVKVEDYKALAWFEE 293 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 + +FF R EY + Sbjct: 294 EVFANSLDDFFAKRPVEYTK 313 >gi|209558898|ref|YP_002285370.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes NZ131] gi|209540099|gb|ACI60675.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit [Streptococcus pyogenes NZ131] Length = 337 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 109/322 (33%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L K W N W+P +VP+ +DL W+S L +D + +I R Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF +H+ ++ I ++L E E Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ +A + Y TG + + G Y GF Sbjct: 142 WVVSTQSLQDRARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM ++ + I+RD+ +H + Q E + +L+E Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E A ++ + A + +G E F E +P + Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYESPFTDEETRVSPEVFAQ 303 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325 >gi|228861541|ref|YP_002854562.1| ribonucleotide reductase B subunit [Enterobacteria phage RB14] gi|227438557|gb|ACP30870.1| ribonucleotide reductase B subunit [Enterobacteria phage RB14] Length = 392 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 65/329 (19%), Positives = 124/329 (37%), Gaps = 39/329 (11%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELTEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF----------------------------LQDL 189 +A +Y + + AD E+ L Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLC 208 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 E + FY FA + + M G A+ ++I RDE LHL +I Q++ Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSG 268 Query: 249 NPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303 +E +Q++ + E E +A G V LN S ++ ++ R Sbjct: 269 TDGDQWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSR 328 Query: 304 CHQIGLE-PLFKY-TENPFPWMSEVIDLK 330 Q GL P+ ++P+PW+ E ++ Sbjct: 329 MKQCGLPCPITDAPVKHPYPWIREYLNSD 357 >gi|9625893|ref|NP_040141.1| ribonucleotide reductase subunit 2 [Human herpesvirus 3] gi|132630|sp|P09247|RIR2_VZVD RecName: Full=Ribonucleoside-diphosphate reductase small chain; Short=R2; AltName: Full=Ribonucleotide reductase small subunit gi|259645448|sp|Q4JQV7|RIR2_VZVO RecName: Full=Ribonucleoside-diphosphate reductase small chain; Short=R2; AltName: Full=Ribonucleotide reductase small subunit gi|60007|emb|CAA27901.1| ribonucleotide reductase (small subunit) [Human herpesvirus 3 strain Dumas] gi|46981429|gb|AAT07700.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|46981500|gb|AAT07776.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|66865986|gb|AAY57634.1| ORF18 [Human herpesvirus 3] gi|66866058|gb|AAY57705.1| ORF18 [Human herpesvirus 3] gi|83721826|emb|CAI44861.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|90992817|gb|ABE03036.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|91980319|gb|ABE67126.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481816|gb|ABF21518.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481890|gb|ABF21591.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94481964|gb|ABF21664.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482038|gb|ABF21737.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482112|gb|ABF21810.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482186|gb|ABF21883.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482260|gb|ABF21956.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482334|gb|ABF22029.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482408|gb|ABF22102.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482482|gb|ABF22175.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|94482556|gb|ABF22248.1| small subunit ribonucleotide reductase [Human herpesvirus 3] gi|111184743|gb|ABH08451.1| ribonucleotide reductase small subunit [Human herpesvirus 3] gi|157965778|gb|ABW06924.1| ribonucleotide reductase small subunit [Human herpesvirus 3] Length = 306 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 66/309 (21%), Positives = 123/309 (39%), Gaps = 29/309 (9%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 + +N W+ ++ ++DD ++ + LT+DE + + F ++++ LV N Sbjct: 16 PDINNLRALSISNRWLESDFIIEDD---YQYLDCLTEDELIFYRFIFTFLSAADDLVNVN 72 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG----ELFNMYREVPSI 155 + ++ + S + Y + Q E VH+ + I L + + N+ PSI Sbjct: 73 L-GSLTQLFSQKDIHHYYIEQECIEVVHARVYSQIQLMLFRGDESLRVQYVNVTINNPSI 131 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K W + K D + + ++ ++ EG++F + FA I L Sbjct: 132 QQKVQWLEE--------------KVRDNPSVAEKYILMILIEGIFFVSSFAAIAYLRNNG 177 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 V + I RDE++H + + N E P + + + EA +E A+ Sbjct: 178 LFVVTCQFNDLISRDEAIHTSASCCIYNNYVPEKPAIT------RIHQLFSEAVEIECAF 231 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 PK + +N + QY++F A+R I + LF + + K NF Sbjct: 232 LKSHAPKTRL-VNVDAITQYVKFSADRLLSAINVPKLFNTPPPDSDFPLAFMIADKNTNF 290 Query: 336 FETRVTEYQ 344 FE T Y Sbjct: 291 FERHSTSYA 299 >gi|326336655|ref|ZP_08202823.1| ribonucleoside-diphosphate reductase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691125|gb|EGD33096.1| ribonucleoside-diphosphate reductase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 319 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 116/320 (36%), Gaps = 23/320 (7%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + W+ +EV D+ +KS L+ E+ +KR L A Sbjct: 7 RENYKPFEYPEVMKFVDMMHQTFWVHSEVEFTADIQDFKS--NLSLIEKEAVKRALLGIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y PE A E HS + ++ LG + F Sbjct: 65 QVEVAV-KTFWGDLYDIFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNNE--FETLL 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 EVP + +Y + ++ + F ++ E ++ FA ILS Sbjct: 122 EVPIFKERNGVLKEY------------LAKNRENAMERILFFTLIIENASLFSQFATILS 169 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 R M +A + DE +H N GI ++ I ENP TK ++++ + E Sbjct: 170 FTRFKGYMKNVANIIAWTSIDEQVHANAGIYILKTIFEENPEFRTKA-KEEATQFIREYI 228 Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325 LLE +G + YM++ + Q+ L F T P W E Sbjct: 229 LLEDKMLDWIFEEGELDFFTKKDLANYMRYRLDDALTQLDLGKPFGITAEEAKPMLWFEE 288 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 + + + +FF R T Y + Sbjct: 289 EVFVNELDDFFAKRPTAYTK 308 >gi|15674552|ref|NP_268726.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes M1 GAS] gi|71910160|ref|YP_281710.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS5005] gi|94987981|ref|YP_596082.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS9429] gi|94989855|ref|YP_597955.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10270] gi|94991863|ref|YP_599962.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS2096] gi|13621658|gb|AAK33447.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes M1 GAS] gi|71852942|gb|AAZ50965.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS5005] gi|94541489|gb|ABF31538.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS9429] gi|94543363|gb|ABF33411.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10270] gi|94545371|gb|ABF35418.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS2096] Length = 337 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 109/322 (33%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L K W N W+P +VP+ +DL W+S L +D + +I R Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF +H+ ++ I ++L E E Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ +A + Y TG + + G Y GF Sbjct: 142 WVVSTQSLQDRARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM ++ + I+RD+ +H + Q E + +L+E Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E A ++ + A + +G E F E +P + Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYESPFTDEETRVSPEVFAQ 303 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325 >gi|32709433|gb|AAP86735.1| NrdB [Enterobacteria phage U5] Length = 391 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 63/328 (19%), Positives = 122/328 (37%), Gaps = 38/328 (11%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELIEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQE---------------------------FLQDLF 190 +A +Y + + + E L Sbjct: 149 RAESIGRYYDDVLVKTREWENAKENYESSIGSCQQNDIEMYEEIMFNAKRDLMKSLYLCL 208 Query: 191 VFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 E + FY FA + + M G A+ ++I RDE LHL +I Q++ Sbjct: 209 HVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGT 268 Query: 250 PHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRC 304 +E +Q++ + E E +A G V LN S ++ ++ R Sbjct: 269 DGDEWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRM 328 Query: 305 HQIGLE-PLFKY-TENPFPWMSEVIDLK 330 Q GL P+ ++P+PW+ E ++ Sbjct: 329 KQCGLPCPITDAPVKHPYPWIREYLNSD 356 >gi|42561374|ref|NP_975825.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492872|emb|CAE77467.1| ribonucleoside-diphosphate reductase 2 beta chain [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321363|gb|ADK70006.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 339 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 58/326 (17%), Positives = 115/326 (35%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W N W+P ++P+ +DL+ W+S L+ + + ++ R Sbjct: 30 NWNVINDEKDLEVWN---RITQNFWLPEKIPVSNDLSSWRS---LSSEWQQLVTRTFTGL 83 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A H + AF VH+ ++ I ++L E E Sbjct: 84 TLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 143 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + ++ +A + Y TGT + L G Y GF Sbjct: 144 WVVKTETLQKRAKALIPYY---------TGTDPLKSKVAAALMP------GFLLYGGFYL 188 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L K+ ++ + I+RD+ +H + + + P E ++ +L+E Sbjct: 189 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLPVEKQTEMKEFVFKLLYE 248 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E + ++ + A + +G + F E P + Sbjct: 249 LIDLETAYLKELYAGFDI---VDDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 305 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + +FF + Y G ++ Sbjct: 306 LSARADENHDFFSGNGSSYVMGVSVE 331 >gi|21909837|ref|NP_664105.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS315] gi|28896468|ref|NP_802818.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes SSI-1] gi|50913718|ref|YP_059690.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10394] gi|21904023|gb|AAM78908.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes MGAS315] gi|28811719|dbj|BAC64651.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes SSI-1] gi|50902792|gb|AAT86507.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10394] Length = 337 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 109/322 (33%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L K W N W+P +VP+ +DL W+S L +D + +I R Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF +H+ ++ I ++L E E Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ +A + Y TG + + G Y GF Sbjct: 142 WVVSTQSLQDRARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM ++ + I+RD+ +H + Q E + +L+E Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E A ++ + A + +G + F E +P + Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYDSPFTDEETRVSPEVFAQ 303 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325 >gi|304373441|ref|YP_003856650.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma hyorhinis HUB-1] gi|304309632|gb|ADM22112.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma hyorhinis HUB-1] gi|330723642|gb|AEC46012.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma hyorhinis MCLD] Length = 344 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 59/333 (17%), Positives = 119/333 (35%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W + + N W+P ++P+ +DL W++ L+ + +I R Sbjct: 35 NWNVINDNKDLEVWNRVVQ---NFWLPEKIPVSNDLETWRT---LSPTWKRVITRTFTGL 88 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A + + AF VH+ ++ I ++L E E Sbjct: 89 TLLDTIQATIGDVAQIPYSQTDHEQVIYANFAFMVGVHARSYGTIFSTLCTSEEIEEAHE 148 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ A+A + Y TG + + G Y GF Sbjct: 149 WVINTKSLQARAQALIPYY---------TGKDPLKSKVAAAMMP------GFLLYGGFYL 193 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L +K+ ++ + I+RD+ +H + + + P +E ++ +L+E Sbjct: 194 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVEKLPLKKQEEMKKFVFDLLYE 253 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE Y +E + + A ++ + A + +G + F E P + Sbjct: 254 LIDLEKTYLNELYSEVGL---AEEAIKFSVYNAGKFLQNLGYDSPFTEEETRIEPEIFNQ 310 Query: 325 EVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + +FF + Y G + WD Sbjct: 311 LSARADENHDFFSGNGSSYVMGVSEETEDEDWD 343 >gi|213021870|ref|ZP_03336317.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 277 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 25/265 (9%) Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172 ++ AF E +HS ++ +II ++ D +F+ I +A Y L Sbjct: 6 LETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEM 65 Query: 173 S-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 + GT + ++ L + E + FY FA + Sbjct: 66 TSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAEREL 125 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E Sbjct: 126 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQE 185 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331 +A G +GLN QY+++I N R +GL+ F+ NP PW++ + Sbjct: 186 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDN 245 Query: 332 EKNF-FETRVTEY---QQGAELKWD 352 + E V+ Y Q +E+ D Sbjct: 246 VQVAPQEVEVSSYLVGQIDSEVDTD 270 >gi|94993745|ref|YP_601843.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS10750] gi|94547253|gb|ABF37299.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS10750] Length = 337 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 109/322 (33%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L K W N W+P +VP+ +DL W+S L +D + +I R Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF +H+ ++ I ++L E E Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ +A + Y TG + + G Y GF Sbjct: 142 WVVSTQSLQDRARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM ++ + I+RD+ +H + Q E + +L+E Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E A ++ + A + +G E F E +P + Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQ 303 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325 >gi|227833718|ref|YP_002835425.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] gi|227454734|gb|ACP33487.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium aurimucosum ATCC 700975] Length = 341 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 62/361 (17%), Positives = 128/361 (35%), Gaps = 35/361 (9%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 +N+ L+ I D + A + N++ K W N W+P +VP+ Sbjct: 5 SNSAELTSISVTPPSYRHDPSARIRA-INWNRVSDDKDLEVWN---RLTANFWLPEKVPL 60 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 +DL W+ +T +ER + R + +++ A + + A Sbjct: 61 SNDLPAWQ---RMTPEERNLTMRVFTGLTTLDTVQATVGEICQIQDARTEHEEAVYTNIA 117 Query: 122 FEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 F ++VH+ ++ + ++L + E + + A+A L + Sbjct: 118 FMQSVHARSYSSVFSTLSSTKEIDEAYRWAVNNDLLQARAKKVLAHY----------FGP 167 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D + + + ++ Y GF L + A+ + I+RD+++H + Sbjct: 168 DPLKRKVSSTLLSSLLL-----YAGFYLPLHFSVHATLTNTADMIRLILRDKAVHGYYSG 222 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + L KE + ++L E LE+ Y+ E + ++++ Sbjct: 223 YKYQRGLESTTPLRQKEMHDFTISLLEELYALELDYSGELYEPLGL---MDDVAVFVRYN 279 Query: 300 ANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKW 351 AN+ +G F E NP + + +FF + Y G ++ W Sbjct: 280 ANKALMNLGYPDYFPPEETEVNPEILAALAPGADENHDFFSGSGSSYVIGTAEETSDDDW 339 Query: 352 D 352 D Sbjct: 340 D 340 >gi|146322252|ref|YP_001174719.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis] gi|145968743|gb|ABQ00021.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis] Length = 316 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 133/338 (39%), Gaps = 34/338 (10%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 MLN + + + W+K A W+ T VP+ +DL W+ L+D E+ ++K Sbjct: 1 MLNKTMNWQLIEDELDEYVWDK---ATAQFWLDTRVPVSNDLLDWR---KLSDMEKEVVK 54 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLD 141 + +G A ++L + + A+ ++ + R L F E++H+ T+ I+ SL D Sbjct: 55 KAVGGLALLDTLQSEEGLYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKD 114 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 E++ + KA + + GT + V V EG+ + Sbjct: 115 IEEIYTWMNNDRRMQFKAKKI--------NEIYQNGTP-------MQVKVASVFLEGILY 159 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+ F L NK+ +AE + ++RDES+H + Q E + F Sbjct: 160 YSNFFIPLWYRGQNKLANLAELIKLVIRDESVHGTYLGYKFRQDFNELSITEQENFTNWM 219 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---- 317 + L E E AY E + + + ++++ AN+ +G + FK Sbjct: 220 YSFLEELLDNEFAYTEEVYSEIGL---VEDIKTFVKYNANKSLQNMGFDIYFKDASANDV 276 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE---LKWD 352 NP M+ + +FF Y G L D Sbjct: 277 NPIV-MNGISIETANHDFFSQVGAGYLMGEAEEMLDDD 313 >gi|139474322|ref|YP_001129038.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes str. Manfredo] gi|134272569|emb|CAM30835.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus pyogenes str. Manfredo] Length = 337 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 109/322 (33%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L K W N W+P +VP+ +DL W+S L +D + +I R Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF +H+ ++ I ++L E E Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ +A + Y TG + + G Y GF Sbjct: 142 WVVSTQSLQDRARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM ++ + I+RD+ +H + Q E + +L+E Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E A ++ + A + +G + F E +P + Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYDSPFTDEETRISPEVFAQ 303 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325 >gi|38234491|ref|NP_940258.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium diphtheriae NCTC 13129] gi|38200754|emb|CAE50457.1| ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium diphtheriae] Length = 341 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 55/338 (16%), Positives = 121/338 (35%), Gaps = 37/338 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+ K W+ N W+P +VP+ +DL W++ +T R ++ R Sbjct: 25 NWNRTQDAKDNEVWQ---RLTANFWLPEKVPLSNDLPTWRT---MTPVYRELVTRTFTGL 78 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L A+ ++ + AF +AVH+ ++ + +++ + + + Sbjct: 79 TLLDTLQASVGEISQIPDAHTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSTEIDDAYT 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + +A +++ V + + Y GF Sbjct: 139 WAISNPLLQRRATRVIEHY---------------YGSDPLKRKVASTLLSSLLLYAGFYL 183 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L L K++ A+ + I+RD+++H + + P E + + ++ E Sbjct: 184 PLWLSTRGKLMNTADMIRLILRDKAVHGYYSGYKYQRGLELKPERAN-EMAEFTYSLCDE 242 Query: 268 ATLLEIAYAHETM-----PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319 +E AY + GL ++ + A++ +G EP ++ +P Sbjct: 243 LLDMEKAYTADLYAPADQANALEGLTLDGVMSFVYYNADKALMNLGYEPAYEEQAAHVSP 302 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + + +FF + Y G E WD Sbjct: 303 EIIAALTPESNETHDFFSGSGSAYIIGTAEETTEEDWD 340 >gi|86156146|gb|ABC86791.1| ribonucleotide reductase beta subunit [Borrelia turicatae] Length = 321 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 66/334 (19%), Positives = 128/334 (38%), Gaps = 26/334 (7%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 M + N+L G+ + W+ E+P+ DD +W N L DER + Sbjct: 1 MNMNREAINWNRLNN---GYTKMFWDQNIRQFWVDEEIPISDDKLVW---NSLDIDERDV 54 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 ++ LG ++ + + I + N + L E +H+ ++ I +SL Sbjct: 55 YEKVLGGLTLLDTEQGSVGMPRIALAIDNLAYKPVLGFMGAMEHMHAKSYSSIFSSLSNI 114 Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 E +F+ + + K + L + D+ L V E Sbjct: 115 ERIDYIFDWVKTYRNFQDKLDLILGKYNNIH-----------DRMSLYKALCTSVFLETF 163 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 FY+GF L L KM+ E I+RDES+H F + + + + + Sbjct: 164 LFYSGFFYPLYLAGQGKMINSGEIINLILRDESVHGVFVGLLAQEEFNKMTSREQEFAYK 223 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-- 317 ++ +L LE AY + + + + ++++ A++ +G EP F + Sbjct: 224 EAMFILDRLYDLEKAYTKDLYSSIGLE---SAVDVFVRYNADKALMNLGFEPTFNIQDID 280 Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NP ++ + K +FF T+ Y + +++ Sbjct: 281 VNPLV-LNGLRTDTKTHDFFSTKGNGYIKPMKIE 313 >gi|293572347|ref|ZP_06683339.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] gi|291607581|gb|EFF36911.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] Length = 316 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 133/338 (39%), Gaps = 34/338 (10%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 MLN + + + W+K A W+ T VP+ +DL W+ L+D E+ ++K Sbjct: 1 MLNKTMNWQLIEDELDEYVWDK---ATAQFWLDTRVPVSNDLLDWR---KLSDMEKEVVK 54 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLD 141 + +G A ++L + + A+ ++ + R L F E++H+ T+ I+ SL D Sbjct: 55 KAVGGLALLDTLQSEEGLYALKKNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKD 114 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 E++ + KA + + GT + V V EG+ + Sbjct: 115 IEEIYTWMNNDRRMQFKAKKI--------NEIYQNGTP-------MQVKVASVFLEGILY 159 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+ F L NK+ +AE + ++RDES+H + Q E + + Sbjct: 160 YSNFFIPLWYRGQNKLANLAELIKLVIRDESVHGTYLGYKFRQDFNELSITEQENYTNWM 219 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---- 317 + L E E AY E + + + ++++ AN+ +G + FK Sbjct: 220 YSFLEELLDNEFAYTEEVYSEIGL---VEDIKTFVKYNANKSLQNMGFDIYFKDASANDV 276 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE---LKWD 352 NP M+ + +FF Y G L D Sbjct: 277 NPIV-MNGISIETANHDFFSQVGAGYLMGEAEEMLDDD 313 >gi|57014145|gb|AAT68710.2| ribonucleoside reductase beta subunit [Borrelia hermsii] Length = 321 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 62/330 (18%), Positives = 126/330 (38%), Gaps = 26/330 (7%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 + N+L W+ W+ E+P+ DD +W + +G +ER + ++ Sbjct: 5 REAINWNRLNNSYTKMFWD---QNIRQFWVDEEIPISDDKLVWNTLDG---EERDVYEKV 58 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEG 143 LG ++ + + I + N + + L E +H+ ++ I +SL Sbjct: 59 LGGLTLLDTEQGSVGMPRIALAIDNLDYKPVLGFMGAMEHMHAKSYSSIFSSLSNIDRID 118 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + + K + L ++ D+ L V E FY+ Sbjct: 119 HIFGWVKTYRNFQDKLDLILGKYNSIH-----------DRMSLYKALCTSVFLETFLFYS 167 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF L L KMV E I+RDES+H F + + + Q+++ Sbjct: 168 GFFYPLYLAGQGKMVNSGEIINLILRDESVHGVFVGLLAQEEFNKMTFKEQAFAQREATL 227 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 +L LE AY + + + + ++++ A++ +G + F + NP Sbjct: 228 ILERLYYLESAYTKDLYSSIGLE---GAVDVFVRYNADKALMNLGFDSAFNIRDIDVNPL 284 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++ + K +FF T+ Y + +++ Sbjct: 285 V-LNGLRTNTKTHDFFSTKGNGYIKPMKVE 313 >gi|294155961|ref|YP_003560345.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma crocodyli MP145] gi|291600208|gb|ADE19704.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma crocodyli MP145] Length = 340 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 49/331 (14%), Positives = 109/331 (32%), Gaps = 26/331 (7%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ N + + E + N W+P ++P+ +D+ W++ L+D+ + Sbjct: 19 ERNGFNGKMRAVNWNIINDDKDLEVWNRVTQNFWLPEKIPVSNDIPSWRT---LSDEWQT 75 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 +I R +++ A +A + + AF AVH+ ++ I ++L Sbjct: 76 LITRTFTGLTMLDTIQATVCDIAQIPNALTDHEQVIYANFAFMVAVHARSYGTIFSTLCS 135 Query: 141 DE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E + +A + Y E V + G Sbjct: 136 SDQIEEAHEWVIANEELQERARILIPYYH---------------CEDPLKSKVAAALMPG 180 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 Y GF L +K+ ++ + I+RD+ +H + + + E + Sbjct: 181 FLLYGGFYLPFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSDKRKAELK 240 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE- 317 + +L+ E + + A ++ + A + +G + F E Sbjct: 241 EFVFELLYRLIDAEKKFLTKLYEG---FDLAEDAIRFSVYNAGKFLQNLGYDSPFTDEET 297 Query: 318 --NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 P + + +FF + Y G Sbjct: 298 RIEPEIFAQLSARADENHDFFSGNGSSYVMG 328 >gi|20809684|gb|AAH28932.1| Similar to ribonucleotide reductase protein r2 class I [Homo sapiens] Length = 172 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 9/168 (5%) Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 + + V + EG++F FA I L + M G+ + I RDE LH +F + Sbjct: 1 EATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMF 60 Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302 HL K +++ R ++ A +E + E +P +G+N +QY++F+A+R Sbjct: 61 K-------HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADR 113 Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 114 LMLELGFSKVF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 159 >gi|213962351|ref|ZP_03390614.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga sputigena Capno] gi|213955017|gb|EEB66336.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga sputigena Capno] Length = 319 Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 119/320 (37%), Gaps = 23/320 (7%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y E + + W+ +EV D+ +KS L+ E+ +KR L A Sbjct: 7 RENYKPFEYPEVMEFVNAMHKSFWVHSEVEFTADIQDFKS--NLSTVEQEAVKRALLGIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y PE A E HS + ++ LG + F Sbjct: 65 QVEVSV-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLL 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 EVP + N +Y + ++ + F ++ E ++ FA ILS Sbjct: 122 EVPIFKERNNILKEY------------LAKNRENAMERILFFTLIIENASLFSQFATILS 169 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 R + +A + DE LH N GI ++ +I E P + T + ++ + Sbjct: 170 FTRFKGYLKNVANIIAWTSIDEQLHANAGIYILKKIFEERPEMKTIA-EHEATNFIRNYI 228 Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSE 325 LLE +G + + YM++ + Q+GL+ F + P W E Sbjct: 229 LLEDKMLDWIFEQGELEFFSKKDLANYMRYRLDDSLTQLGLDKPFNISGDEAKPMMWFEE 288 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 + + +FF R T Y + Sbjct: 289 EVFSNELDDFFAKRPTAYTK 308 >gi|312962626|ref|ZP_07777115.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas fluorescens WH6] gi|311283001|gb|EFQ61593.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas fluorescens WH6] Length = 136 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 88/136 (64%), Positives = 108/136 (79%) Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 M G+AEQ+QYI+RDES+HLNFGIDVINQIKIENPHLW E ++++ M+ + T LEI YA Sbjct: 1 MTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYA 60 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336 +TMP+G +G+NA E Y++FIANRR QIGL+ + T NPFPWMSE++DLKKEKNFF Sbjct: 61 RDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFF 120 Query: 337 ETRVTEYQQGAELKWD 352 ETRV EYQ G L WD Sbjct: 121 ETRVIEYQTGGALSWD 136 >gi|13242410|ref|NP_077433.1| ribonucleotide reductase subunit 2 [Cercopithecine herpesvirus 9] gi|11036562|gb|AAG27191.1|AF275348_11 ribonucleotide reductase, small subunit [Cercopithecine herpesvirus 9] Length = 311 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 64/305 (20%), Positives = 116/305 (38%), Gaps = 18/305 (5%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 E + +N W+ T+ ++DD ++ LT++E K F ++++ LV N Sbjct: 18 PDINELRSLSISNRWLETDFTLEDD---YQYIKCLTEEELSFYKFIFTFLSAADDLVNVN 74 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 I ++ + Y L Q E VHS + I L L EG++F R + A Sbjct: 75 I-GSLITLFKQKDIHHYYLEQECIEVVHSRIYSQI--QLMLFEGDIFERLRYTEATIQDA 131 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 + + + + ++ ++ EG++F + FA I V Sbjct: 132 --------YIKAKVDWLEYNVQMNPLIGEKYILMIIIEGIFFTSSFAAISYFRNNGLFVV 183 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + + I RDE++H + + N K + + EA +E + Sbjct: 184 MCQLNDLISRDEAVHTSASCCIYNNYISYK----EKPAIPRIHQLFMEAVNIECNFISAY 239 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 PK +N + QY+++ A+R I + LF + + +K NFFE Sbjct: 240 APKNQRIINIDAILQYVRYNADRLLSAINIPVLFNAPAPKADFPLAFMTAEKHTNFFERH 299 Query: 340 VTEYQ 344 T Y Sbjct: 300 STAYT 304 >gi|85726187|gb|ABC79616.1| ribonucleotide reductase beta subunit [Borrelia hermsii DAH] Length = 321 Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats. Identities = 61/325 (18%), Positives = 123/325 (37%), Gaps = 26/325 (8%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 + N+L W+ W+ E+P+ DD +W + +G +ER + ++ Sbjct: 5 REAINWNRLNNSYTKMFWD---QNIRQFWVDEEIPISDDKLVWNTLDG---EERDVYEKV 58 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEG 143 LG ++ + + + + N + + L E +H+ ++ I +SL Sbjct: 59 LGGLTLLDTEQGSVGMPRLALAIDNLDYKPVLGFMGAMEHMHAKSYSSIFSSLSNIDRID 118 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + + K + L ++ D+ L V E FY+ Sbjct: 119 HIFGWVKTYRNFQDKLDLILGKYNSIH-----------DRMSLYKALCTSVFLETFLFYS 167 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF L L KMV E I+RDES+H F + + + Q+++ Sbjct: 168 GFFYPLYLAGQGKMVNSGEIINLILRDESVHGVFVGLLAQEEFNKMTFKEQAFAQREATL 227 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 +L LE AY + + + + ++++ A++ +G + F + NP Sbjct: 228 ILERLYYLESAYTKDLYSSIGLE---GAVDVFVRYNADKALMNLGFDSAFNIRDIDVNPL 284 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQ 345 ++ + K +FF T+ Y + Sbjct: 285 V-LNGLRTNTKTHDFFSTKGNGYIK 308 >gi|57867410|ref|YP_189075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus epidermidis RP62A] gi|57638068|gb|AAW54856.1| ribonucleoside-diphosphate reductase 2, beta subunit [Staphylococcus epidermidis RP62A] Length = 340 Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats. Identities = 55/307 (17%), Positives = 111/307 (36%), Gaps = 18/307 (5%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 A + W E DL++WK+ L+ DE+ + L ++ + Sbjct: 19 ALTYWKQNVKQMWTEEEFKPSKDLSVWKT---LSADEQETYVKALSGLTGLDTTQGTEGM 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + H R + E +H ++ +I TSL + + + VP+ + Sbjct: 76 PLLAFHYPEEIWRGVFAFMSMMENIHHKSYSHIFTSLLERKDTHYYLKEWVPA----NKY 131 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + T+ +++ + + + + E F++GF L L KMV Sbjct: 132 LNKKTKLITTNYYKLLKPNPTDREIYVAMASSIFLESFLFFSGFYYPLYLAGQGKMVHSG 191 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E + I+ DE++H + I + ++ +++ + + E+ YA Sbjct: 192 EIIRKIILDETIHGSGTGYAAQVIFDKFSKEEQEDIRKELMELFDQLYFNEVEYAASLYD 251 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL----KKEKNFFE 337 K + +Y+Q+ NR +G E +F NP P+ V + +FF Sbjct: 252 KLGL---TEDVIRYIQYNGNRALMNLGWETVF----NPEPFNPIVENGLRTDTTNHDFFS 304 Query: 338 TRVTEYQ 344 + Y Sbjct: 305 VKGDGYT 311 >gi|297622357|ref|YP_003703791.1| ribonucleotide reductase [Truepera radiovictrix DSM 17093] gi|297163537|gb|ADI13248.1| ribonucleotide reductase [Truepera radiovictrix DSM 17093] Length = 324 Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats. Identities = 61/321 (19%), Positives = 119/321 (37%), Gaps = 19/321 (5%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + L P +Y + +++W+ TE + +D+ ++ G+ + ER ++ R L Sbjct: 5 RRSTLRPAEYPEFLAYRDAIRHSYWLHTEYNLTEDVNDYR--VGVREAERQVLTRALLAI 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 A E V +YR PE A E H + +++ LGL + F Sbjct: 63 AQVEVAV-KTFWGDLYRKFPKPEVGAVGYTFAESEVRHQDAYAHLLELLGLTDA--FARL 119 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E P++ + + + ++ + +F E + + F + Sbjct: 120 HEAPALGER---------LAVLDAHLVPVRQDGRDDAFSVALFSAFVEHVSLFGQFLILK 170 Query: 210 SLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 + + + G+A + ++E +H FG ++ ++ E P + F + R +A Sbjct: 171 AFNQATGRFKGVANIVEATSKEEQIHGMFGYKLVETLRRERPEWFGAAFSARLRAACVDA 230 Query: 269 TLLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 E A G + E +MQ N +G PL++ P W Sbjct: 231 ERAERAILRWICEAGALPFLPLAQLEAFMQARFNGALVALGEAPLWEVDPALLAPTRWFE 290 Query: 325 EVIDLKKEKNFFETRVTEYQQ 345 E + K+ +FF R T Y + Sbjct: 291 EELLSSKQVDFFHKRPTAYAK 311 >gi|269941513|emb|CBI49911.1| ribonucleoside-diphosphate reductase subunit [Staphylococcus aureus subsp. aureus TW20] Length = 340 Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats. Identities = 55/307 (17%), Positives = 111/307 (36%), Gaps = 18/307 (5%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 A + W E DL++WK+ L+ DE+ + L ++ + Sbjct: 19 ALTYWKQNVKQMWTEEEFKPSKDLSVWKT---LSADEQETYVKALSGLTGLDTTQGTEGM 75 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + H R + E +H ++ +I TSL + + + VP+ + Sbjct: 76 PLLAFHYPEEIWRGVFAFMSMMENIHHKSYSHIFTSLLERKDTHYYLKEWVPA----NKY 131 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + T+ +++ + + + + E F++GF L L KMV Sbjct: 132 LNKKTKLITTNYYKLLKPNPTDREIYVAMASSIFLESFLFFSGFYYPLYLAGQGKMVHSG 191 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E + I+ DE++H + I + ++ +++ + + E+ YA Sbjct: 192 EIIRKIILDETIHGSGTGYAAQVIFEKFSKEEQEDIRKELMELFDQLYFNEVEYAASLYD 251 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL----KKEKNFFE 337 K + +Y+Q+ NR +G E +F NP P+ V + +FF Sbjct: 252 KLGL---TEDVIRYIQYNGNRALMNLGWETVF----NPEPFNPIVENGLRTDTTNHDFFS 304 Query: 338 TRVTEYQ 344 + Y Sbjct: 305 VKGDGYT 311 >gi|83319806|ref|YP_424093.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283692|gb|ABC01624.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 339 Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats. Identities = 58/326 (17%), Positives = 113/326 (34%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W N W+P ++P+ +DL W+S L+ + + ++ R Sbjct: 30 NWNVINDEKDLEVWN---RITQNFWLPEKIPVSNDLPSWRS---LSAEWQQLVTRTFTGL 83 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A H + AF VH+ ++ I ++L E E Sbjct: 84 TLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 143 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + S+ +A + Y GT + L G Y GF Sbjct: 144 WVVKTESLQKRAKALIPYYA---------GTDPLKSKVAAALMP------GFLLYGGFYL 188 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L K+ ++ + I+RD+ +H + + + E ++ +L+E Sbjct: 189 PFYLSSRAKLPNTSDIVRLILRDKVIHNYYSGYKYQKKVAKLSVEKQAEMKEFVFKLLYE 248 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E + A ++ + A + +G + F E P + Sbjct: 249 LIDLETAYLKELYAGFDI---ADDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 305 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + +FF + Y G ++ Sbjct: 306 LSARADENHDFFSGNGSSYVMGVSVE 331 >gi|255724184|ref|XP_002547021.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404] gi|240134912|gb|EER34466.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404] Length = 252 Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats. Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 5/151 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +L + P+KY W Y A + W EV + DL W N L D+ER Sbjct: 89 EEPLLQENKRRYVMFPIKYHEIWNFYKKAEASFWTCEEVDLSKDLDDWN--NKLNDNERY 146 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + R L FFA+S+ +V N++ + +PE + + Q E +HS + +I + Sbjct: 147 FVSRVLAFFAASDGIVGENLIENFSAEVQSPEAKSFYGFQIMMENIHSEMYSLLIETYVK 206 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQT 168 D E FN +P IT KA WA+++ Q Sbjct: 207 DPQEADFLFNAIENIPCITKKAEWAIKWIQD 237 >gi|184156148|ref|YP_001844488.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum IFO 3956] gi|227515317|ref|ZP_03945366.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|260662379|ref|ZP_05863274.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|183227492|dbj|BAG28008.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum IFO 3956] gi|227086331|gb|EEI21643.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC 14931] gi|260553070|gb|EEX26013.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|299783625|gb|ADJ41623.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum CECT 5716] Length = 316 Score = 169 bits (427), Expect = 8e-40, Method: Composition-based stats. Identities = 57/309 (18%), Positives = 117/309 (37%), Gaps = 28/309 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A W+ T VP+ +D W++ LTD E+ +I + +G A ++L + V + Sbjct: 20 WDKATAQFWLDTRVPVSNDRGDWRT---LTDSEKGVINKVVGGLALLDTLQSEEGVNVMR 76 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWAL 163 + + E++H+ ++ I+++L + F+ P + K Sbjct: 77 EDARTRKEVGVINDFLMMESIHAKSYGTILSTLNDQKTIDDTFHWMNNDPRMQYKVRRIN 136 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + Q ++ + V V EG+ +Y+ F L NK+ ++E Sbjct: 137 EIYQNGNN---------------LEKKVASVFLEGILYYSNFFTPLWYRGNNKLANLSEV 181 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + ++RDES+H + Q E F+ +L + E A+ Sbjct: 182 IKLVIRDESVHGTYLGYKFQQAFAELTPDEQTRFRAWMDDLLADLLENEFAFTEVVYAPI 241 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFETR 339 + +Q++++ AN+ + +G +F + NP M+ + +FF Sbjct: 242 QM---VEDVKQFVRYNANKAMNNMGFAAIFNHAAIEDINPIV-MNGISTETANHDFFSQV 297 Query: 340 VTEYQQGAE 348 Y G Sbjct: 298 GAGYLMGNA 306 >gi|302190764|ref|ZP_07267018.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus iners AB-1] gi|309804064|ref|ZP_07698145.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 11V1-d] gi|309804878|ref|ZP_07698940.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 09V1-c] gi|309807870|ref|ZP_07701802.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 01V1-a] gi|309809732|ref|ZP_07703586.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners SPIN 2503V10-D] gi|312871305|ref|ZP_07731403.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 3008A-a] gi|312872703|ref|ZP_07732768.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2062A-h1] gi|312873302|ref|ZP_07733357.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2052A-d] gi|312874885|ref|ZP_07734904.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2053A-b] gi|315654122|ref|ZP_07907038.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus iners ATCC 55195] gi|325912248|ref|ZP_08174645.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners UPII 143-D] gi|325913678|ref|ZP_08176040.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners UPII 60-B] gi|329919824|ref|ZP_08276775.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners SPIN 1401G] gi|308163832|gb|EFO66098.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 11V1-d] gi|308165817|gb|EFO68038.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 09V1-c] gi|308168972|gb|EFO71058.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 01V1-a] gi|308169911|gb|EFO71950.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners SPIN 2503V10-D] gi|311089630|gb|EFQ48055.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2053A-b] gi|311091182|gb|EFQ49571.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2052A-d] gi|311091745|gb|EFQ50124.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 2062A-h1] gi|311093319|gb|EFQ51665.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LEAF 3008A-a] gi|315488818|gb|EFU78464.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus iners ATCC 55195] gi|325475907|gb|EGC79076.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners UPII 143-D] gi|325477037|gb|EGC80187.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners UPII 60-B] gi|328937171|gb|EGG33599.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners SPIN 1401G] Length = 337 Score = 169 bits (427), Expect = 8e-40, Method: Composition-based stats. Identities = 61/322 (18%), Positives = 117/322 (36%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P ++P+ +DL W N L+ D + +I R Sbjct: 28 NWNKIDDDKDLEVWN---RVTQNFWLPEKIPVSNDLPSW---NSLSKDWQQLITRTFTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A+ +A ++ + AF AVH+ ++ I ++L + E N Sbjct: 82 TLLDTIQASIGDVAQIKNAQTDHEQAIYANFAFMVAVHARSYGTIFSTLCNSDQIDEAHN 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 ++ A+A + Y TG + + G Y GF Sbjct: 142 WVINNEALQARAKALIPYY---------TGNDPLKSKVAAAMMP------GFLLYGGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ A+ + I+RD+ +H + Q + E + +L++ Sbjct: 187 PFYLSSRNKLPNTADIIRLILRDKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFVFALLYK 246 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEV 326 LE AY E + A ++ + A + +G + F E + P + Sbjct: 247 LIDLEKAYLRELYKGFDI---AEDAIRFSIYNAGKFLQNLGYDSPFTEAETHIAPEVLAQ 303 Query: 327 ID--LKKEKNFFETRVTEYQQG 346 + + +FF + Y G Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325 >gi|311741268|ref|ZP_07715092.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium pseudogenitalium ATCC 33035] gi|311303438|gb|EFQ79517.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium pseudogenitalium ATCC 33035] Length = 341 Score = 169 bits (427), Expect = 8e-40, Method: Composition-based stats. Identities = 62/361 (17%), Positives = 128/361 (35%), Gaps = 35/361 (9%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 +N+ L+ I D + A + N++ K W N W+P +VP+ Sbjct: 5 SNSAELTSISVTPPSYRHDPSARIRA-INWNRVSDDKDLEVWN---RLTTNFWLPEKVPL 60 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 +DL W+ +T +ER + R + +++ A + + A Sbjct: 61 SNDLPAWQ---KMTPEERNLTMRVFTGLTTLDTVQATVGEICQIQDARTEHEEAVYTNIA 117 Query: 122 FEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 F ++VH+ ++ + ++L + E + + A+A L + Sbjct: 118 FMQSVHARSYSSVFSTLSSTKEIDEAYRWAVNNDLLQARAKKVLAHY----------FGP 167 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D + + + ++ Y GF L + A+ + I+RD+++H + Sbjct: 168 DPLKRKVSSTLLSSLLL-----YAGFYLPLHFSVHATLTNTADMIRLILRDKAVHGYYSG 222 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + L KE + ++L E LE+ Y+ E + ++++ Sbjct: 223 YKYQRGLESTTPLRQKEMHDFTISLLEELYALELDYSGELYEPLGL---MDDVAVFVRYN 279 Query: 300 ANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKW 351 AN+ +G F E NP + + +FF + Y G ++ W Sbjct: 280 ANKALMNLGYPDYFPPEETEVNPEILAALAPGADENHDFFSGSGSSYVIGTAEETSDDDW 339 Query: 352 D 352 D Sbjct: 340 D 340 >gi|329738368|gb|AEB97332.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 1] Length = 310 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 60/308 (19%), Positives = 116/308 (37%), Gaps = 25/308 (8%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 E + N+W E+ D + LT +E K F A+++ L+ + Sbjct: 16 DDIRELRDLSIANNWNEFELCYSRDEKD---VDLLTPEELDFYKFVFAFLAAADDLINLD 72 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE----VPSI 155 I + + + + Y Q E VHS T+ + L + + Y P+I Sbjct: 73 I-GNLMTLFPHKDIQHYYAEQIRIETVHSRTYSLVQMILFKGDLHARDRYVTEAIKDPAI 131 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K +W + L + ++ ++ EG++F FA I L R N Sbjct: 132 KKKIDWL-------------NRVQVETDLTLPEKYILMILLEGIFFVASFAAIAFLRRRN 178 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 V + + I RDE++H + N ++ K ++ + EA +E + Sbjct: 179 IFVVMCQSNDLISRDEAVHTTASCRIYNNWLGDHK----KPSAKRIHQLFKEAIEIECNF 234 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 P+ ++ + + ++++ +R IG+ +F + ++ + K NF Sbjct: 235 LASRAPQASRLIDLEAIQSFVRYSGDRLLTAIGVPTIFDEPPPDPSFPLTLMSIDKNVNF 294 Query: 336 FETRVTEY 343 FE R T Y Sbjct: 295 FEHRSTAY 302 >gi|71903000|ref|YP_279803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS6180] gi|71802095|gb|AAX71448.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus pyogenes MGAS6180] Length = 337 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 61/322 (18%), Positives = 109/322 (33%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L K W N W+P +VP+ +DL W+S L +D + +I R Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF +H+ ++ I ++L E E Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ ++ + Y TG + + G Y GF Sbjct: 142 WVVSTQSLQDRSRVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM ++ + I+RD+ +H + Q E + +L+E Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E A ++ + A + +G + F E +P + Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYDSPFTDEETRISPEVFAQ 303 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325 >gi|19745563|ref|NP_606699.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes MGAS8232] gi|19747686|gb|AAL97198.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes MGAS8232] Length = 337 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 61/322 (18%), Positives = 109/322 (33%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L K W N W+P +VP+ +DL W+S L +D + +I R Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF +H+ ++ I ++L E E Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ ++ + Y TG + + G Y GF Sbjct: 142 WVVSTQSLQDRSRVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM ++ + I+RD+ +H + Q E + +L+E Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E A ++ + A + +G + F E +P + Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325 >gi|306827912|ref|ZP_07461179.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes ATCC 10782] gi|304429831|gb|EFM32873.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus pyogenes ATCC 10782] Length = 337 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 61/322 (18%), Positives = 109/322 (33%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N L K W N W+P +VP+ +DL W+S L +D + +I R Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF +H+ ++ I ++L E E Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ +A + Y TG + + G Y GF Sbjct: 142 WVVSTQSLQDRARVLIPYY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 186 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L KM ++ + I+RD+ +H + Q + + +L+E Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAKMKAFVFDLLYE 246 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E A ++ + A + +G + F E +P + Sbjct: 247 LIDLEKAYLRELYAG---FDLAEDAIRFSLYNAGKFLQNLGYDSPFTDEETRVSPEVFAQ 303 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325 >gi|259500785|ref|ZP_05743687.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM 13335] gi|259167479|gb|EEW51974.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM 13335] Length = 339 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 61/322 (18%), Positives = 117/322 (36%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P ++P+ +DL W N L+ D + +I R Sbjct: 30 NWNKIDDDKDLEVWN---RVTQNFWLPEKIPVSNDLPSW---NSLSKDWQQLITRTFTGL 83 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A+ +A ++ + AF AVH+ ++ I ++L + E N Sbjct: 84 TLLDTIQASIGDVAQIKNAQTDHEQAIYANFAFMVAVHARSYGTIFSTLCNSDQIDEAHN 143 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 ++ A+A + Y TG + + G Y GF Sbjct: 144 WVINNEALQARAKALIPYY---------TGNDPLKSKVAAAMMP------GFLLYGGFYL 188 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L NK+ A+ + I+RD+ +H + Q + E + +L++ Sbjct: 189 PFYLSSRNKLPNTADIIRLILRDKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFVFALLYK 248 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEV 326 LE AY E + A ++ + A + +G + F E + P + Sbjct: 249 LIDLEKAYLRELYKGFDI---AEDAIRFSIYNAGKFLQNLGYDSPFTEAETHIAPEVLAQ 305 Query: 327 ID--LKKEKNFFETRVTEYQQG 346 + + +FF + Y G Sbjct: 306 LSARADENHDFFSGNGSSYVMG 327 >gi|313665031|ref|YP_004046902.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma leachii PG50] gi|312949985|gb|ADR24581.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma leachii PG50] Length = 339 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 112/326 (34%), Gaps = 29/326 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W N W+P ++P+ +DL W+S L+ + + ++ R Sbjct: 30 NWNVINDEKDLEVWN---RITQNFWLPEKIPVSNDLPSWRS---LSAEWQQLVTRTFTGL 83 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A H + AF VH+ ++ I ++L E E Sbjct: 84 TLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 143 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + S+ +A + Y GT + L G Y GF Sbjct: 144 WVVKTESLQKRAKALIPYYA---------GTDPLKSKVAAALMP------GFLLYGGFYL 188 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L K+ ++ + I+RD+ +H + + + E ++ +L+E Sbjct: 189 PFYLSSRAKLPNTSDIVRLILRDKVIHNYYSGYKYQKKVAKLSVEKQAEMKEFVFKLLYE 248 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE Y E + A ++ + A + +G + F E P + Sbjct: 249 LIDLETDYLKELYAGFDI---ADDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 305 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + +FF + Y G ++ Sbjct: 306 LSARADENHDFFSGNGSSYVMGVSVE 331 >gi|13508061|ref|NP_110010.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma pneumoniae M129] gi|2500211|sp|P75461|RIR2_MYCPN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|1674208|gb|AAB96162.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma pneumoniae M129] gi|301633274|gb|ADK86828.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma pneumoniae FH] Length = 339 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 57/357 (15%), Positives = 122/357 (34%), Gaps = 39/357 (10%) Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 +SP++ +K+ + + + + N + K W N W+P ++P+ +D+ Sbjct: 11 SVSPLEYAQKKFQGNLRSV-----NWNLVDDEKDLEVWN---RITQNFWLPEKIPVSNDI 62 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 WK L+ + + +I + +++ A + + + AF Sbjct: 63 PSWKQ---LSKEWQDLITKTFTGLTLLDTIQATIGDIKQIDYALTDHEQVIYANFAFMVG 119 Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 VH+ ++ I ++L E E + S+ +A + Y TG Sbjct: 120 VHARSYGTIFSTLCTSEQITEAHEWVVKTESLQKRAKALIPYY---------TGKDPLKS 170 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + L G Y GF L ++ ++ + I+RD+ +H + Sbjct: 171 KVAAALMP------GFLLYGGFYLPFYLSSRKQLPNTSDIIRLILRDKVIHNYYSGYKFQ 224 Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 + + E ++ +++E LE AY E + ++ + A + Sbjct: 225 RKVEKMSKEKQAEMKRFVFDLMYELIELEKAYLKELYEGFGI---VEDAIKFSIYNAGKF 281 Query: 304 CHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 +G + F E P + + +FF + Y G + WD Sbjct: 282 LQNLGYDSPFTEEETRIKPEIFAQLSARADENHDFFSGNGSSYVMGISEETEDKDWD 338 >gi|25010526|ref|NP_734921.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae NEM316] gi|23094879|emb|CAD46097.1| unknown [Streptococcus agalactiae NEM316] Length = 336 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 58/322 (18%), Positives = 114/322 (35%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W N W+P ++P+ +DL W++ L D + +I R Sbjct: 27 NWNKLNDDKDLEVWN---RVTQNFWLPEKIPVSNDLNSWRT---LDADWQQLITRTFTGL 80 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +S+ A +A +H + AF A+H+ ++ I ++L + E Sbjct: 81 TLLDSVQATVGDIAQIKHSQTDHEQVIYANFAFMVAIHARSYGTIFSTLCTSQQIEEAHE 140 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + S+ A++ + + TG + + G Y GF Sbjct: 141 WVVDTESLQARSRILIPFY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 185 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L K+ ++ + I+RD+ +H + Q + E + +L++ Sbjct: 186 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVAKLSVEKQAEMKTFVFDLLYQ 245 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY +E A ++ + A + +G + F E +P + Sbjct: 246 LIDLEKAYLYELYDG---FDLAEDAIRFSNYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 302 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 303 LSARADENHDFFSGNGSSYIMG 324 >gi|50365347|ref|YP_053772.1| ribonucleotide-diphosphate reductase subunit beta [Mesoplasma florum L1] gi|50363903|gb|AAT75888.1| ribonucleoside-diphosphate reductase beta chain [Mesoplasma florum L1] Length = 340 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 58/330 (17%), Positives = 115/330 (34%), Gaps = 31/330 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W N W+P ++P+ +DL W++ LT + + +I R Sbjct: 31 NWNVVNDEKDLEVWN---RITQNFWLPEKIPVSNDLTSWRT---LTPEWQELITRTFTGL 84 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A + + AF AVH+ ++ I ++L E E Sbjct: 85 TLLDTIQATVGDVAQVPNSLTDHEQVIYTNFAFMVAVHARSYGSIFSTLCSSEQIEEAHE 144 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 ++ +A + Y + + L+ + G Y GF Sbjct: 145 WVINTETLQERAKALIPYY--------------VNDDPLKSKV-AAALMPGFLLYGGFYL 189 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L K+ ++ + I+RD+ +H + + + E ++ +L+E Sbjct: 190 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEKQAEMKEFVFKLLYE 249 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY E + A ++ + A + +G + F E P + Sbjct: 250 LIDLEKAYLKELYEDFGL---ADDAIRFSVYNAGKFLQNLGYDSPFTEEETRIEPEIFTQ 306 Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352 + +FF + Y G E + D Sbjct: 307 LSARADENHDFFSGNGSSYIMGVSEETEDD 336 >gi|260904664|ref|ZP_05912986.1| ribonucleoside-diphosphate reductase beta chain [Brevibacterium linens BL2] Length = 341 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 114/334 (34%), Gaps = 36/334 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +D+ W+ LT ER + R Sbjct: 32 NWNRVGDEKDLEVWN---RLTANFWLPEKVPLSNDIPAWQ---RLTQVERTLTMRVFTGL 85 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ A + + AF ++VH+ ++ + ++L + + + Sbjct: 86 TMLDTVQATVGEICQIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLSTTVEIDDAYR 145 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + + LQ+ + L Y GF Sbjct: 146 WAVGNDLLQQRCKKVLQHYYGDDPLKRKVSSTLLSSLLL---------------YAGFYL 190 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L + A+ + I+RD+++H + + +E ++ + +L + Sbjct: 191 PLHFSVHATLTNTADMIRLILRDKAVHGYYSGYKYQRGIENQTSARQEEMREFTYELLED 250 Query: 268 ATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323 LE+AY+ E P G ++++ AN+ +G F E NP Sbjct: 251 LYELELAYSGELYEPLGL----MDDVAVFVRYNANKALMNLGYPARFNSDETQVNPEILA 306 Query: 324 SEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G ++ WD Sbjct: 307 ALAPGADENHDFFSGSGSSYVIGKGEDTSDDDWD 340 >gi|332878859|ref|ZP_08446574.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683210|gb|EGJ56092.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 319 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 68/320 (21%), Positives = 116/320 (36%), Gaps = 23/320 (7%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y E + + W+ +EV D+ +KS L+ E+ IKR L A Sbjct: 7 RESYKPFEYPEVMEFVNAMHKSFWVHSEVEFTADVQDFKS--NLSAVEQEAIKRALLGIA 64 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y PE A E HS + ++ LG + F Sbjct: 65 QVEVSV-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLL 121 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 EVP + +Y + ++ + F ++ E ++ FA +LS Sbjct: 122 EVPVFKERNTVLKEY------------LAKNRENAMERILFFTLIIENASLFSQFATVLS 169 Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 R + +A + DE LH N GI ++ +I E P + K + + + Sbjct: 170 FARFKGYLKNVANIIAWTSVDEQLHANAGIYILKKIFEERPEMKAKA-EADATDFIRNYI 228 Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325 +LE +G + YM++ + Q+GL F + + P W E Sbjct: 229 VLEDKMLDWIFEQGELDFFGKKDLANYMRYRLDDSLTQLGLTKPFNISADEAKPMMWFEE 288 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 + + +FF R T Y + Sbjct: 289 EVFSNELDDFFAKRPTAYTK 308 >gi|22536601|ref|NP_687452.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae 2603V/R] gi|76788476|ref|YP_329136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae A909] gi|76798641|ref|ZP_00780867.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 18RS21] gi|77406064|ref|ZP_00783140.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae H36B] gi|77407720|ref|ZP_00784475.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae COH1] gi|77411308|ref|ZP_00787657.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae CJB111] gi|77414130|ref|ZP_00790296.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 515] gi|22533438|gb|AAM99324.1|AE014211_1 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus agalactiae 2603V/R] gi|76563533|gb|ABA46117.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus agalactiae A909] gi|76586006|gb|EAO62538.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 18RS21] gi|77159800|gb|EAO70945.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae 515] gi|77162644|gb|EAO73606.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae CJB111] gi|77173719|gb|EAO76833.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae COH1] gi|77175344|gb|EAO78137.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus agalactiae H36B] gi|319744439|gb|EFV96796.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus agalactiae ATCC 13813] Length = 336 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 58/322 (18%), Positives = 114/322 (35%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W N W+P ++P+ +DL W++ L D + +I R Sbjct: 27 NWNKLNDDKDLEVWN---RVTQNFWLPEKIPVSNDLNSWRT---LDADWQQLITRTFTGL 80 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +S+ A +A +H + AF A+H+ ++ I ++L + E Sbjct: 81 TLLDSVQATVGDIAQIKHSQTDHEQVIYANFAFMVAIHARSYGTIFSTLCTSQQIEEAHE 140 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + S+ A++ + + TG + + G Y GF Sbjct: 141 WVVDTESLQARSRILIPFY---------TGDDPLKSKVAAAMMP------GFLLYGGFYL 185 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L K+ ++ + I+RD+ +H + Q + E + +L++ Sbjct: 186 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVAKLSVEKQAEMKTFVFDLLYQ 245 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE AY +E A ++ + A + +G + F E +P + Sbjct: 246 LIDLEKAYLYELYDG---FDLAEDAIRFSIYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 302 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 303 LSARADENHDFFSGNGSSYIMG 324 >gi|203288309|ref|YP_002223359.1| ribonucleoside-diphosphate reductase, beta subunit [Borrelia recurrentis A1] gi|203288575|ref|YP_002223482.1| ribonucleoside-diphosphate reductase beta subunit [Borrelia duttonii Ly] gi|201084282|gb|ACH93870.1| ribonucleoside-diphosphate reductase beta subunit [Borrelia duttonii Ly] gi|201085529|gb|ACH95102.1| ribonucleoside-diphosphate reductase, beta subunit [Borrelia recurrentis A1] Length = 321 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 63/329 (19%), Positives = 123/329 (37%), Gaps = 26/329 (7%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 R + N+L G+ + W+ E+P+ DD +W + L+ DER + Sbjct: 1 MRKNREAINWNRLNN---GYTKMFWDQNIRQFWVDEEIPISDDKLVWNT---LSVDERDV 54 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--G 139 ++ LG ++ + + I + N + + L E +H+ ++ I +SL Sbjct: 55 YEKVLGGLTLLDTEQGSVGMPRIALAIDNLDYKPILGFMGAMEHMHAKSYSSIFSSLSNI 114 Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 +F+ + + K L + D+ L V E Sbjct: 115 DRIDYIFDWVKTYRNYQEKLELILGKYNNIH-----------DRMSLYQALCTSVFLETF 163 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 FY+GF L L KMV E I+RDES+H F + + + + + Sbjct: 164 LFYSGFFYPLYLAGQGKMVNSGEIINLILRDESVHGVFVGLLAQEEFDKMTMKEQELAYK 223 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-- 317 + +L + LE Y E + + + ++++ A++ +G + F + Sbjct: 224 EMLLILEKLYSLEREYTKELYSCVGLE---SAVDVFVRYNADKALMNLGFDTKFNIKDTD 280 Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 NP ++ + K +FF T+ Y + Sbjct: 281 VNPLV-LNGLRTDTKTHDFFSTKGNGYIK 308 >gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254039813|gb|ACT56609.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254040683|gb|ACT57479.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 125 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 124/124 (100%), Positives = 124/124 (100%) Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN Sbjct: 2 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 61 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE Sbjct: 62 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 121 Query: 349 LKWD 352 LKWD Sbjct: 122 LKWD 125 >gi|57790965|ref|YP_182369.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 1] gi|5918981|gb|AAD56212.1|AF168792_13 ribonucleotide reductase small subunit [Gallid herpesvirus 1] Length = 310 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 60/308 (19%), Positives = 116/308 (37%), Gaps = 25/308 (8%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 E + N+W E+ D + LT +E K F A+++ L+ + Sbjct: 16 DDIRELRDLSIANNWNEFELCYSRDEKD---VDLLTPEELDFYKLVFAFLAAADDLINLD 72 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE----VPSI 155 I + + + + Y Q E VHS T+ + L + + Y P+I Sbjct: 73 I-GNLMTLFLHKDIQHYYAEQIRIETVHSRTYSLVQMILFKGDLHARDRYVTEAIKDPAI 131 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 K +W + L + ++ ++ EG++F FA I L R N Sbjct: 132 KKKIDWL-------------NRVQVETDLTLPEKYILMILLEGIFFVASFAAIAFLRRRN 178 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 V + + I RDE++H + N ++ K ++ + EA +E + Sbjct: 179 IFVVMCQSNDLISRDEAVHTTASCRIYNNWLGDHK----KPSAKRIHQLFKEAIEIECNF 234 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 P+ ++ + + ++++ +R IG+ +F + ++ + K NF Sbjct: 235 LASRAPQASRLIDLEAIQSFVRYSGDRLLTAIGVPTIFDEPPPDPSFPLTLMSIDKNVNF 294 Query: 336 FETRVTEY 343 FE R T Y Sbjct: 295 FEHRSTAY 302 >gi|12045084|ref|NP_072895.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma genitalium G37] gi|255660230|ref|ZP_05405639.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma genitalium G37] gi|1350602|sp|P47471|RIR2_MYCGE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|3844832|gb|AAC71450.1| ribonucleoside-diphosphate reductase, beta chain [Mycoplasma genitalium G37] gi|166078981|gb|ABY79599.1| ribonucleoside-diphosphate reductase, beta chain [synthetic Mycoplasma genitalium JCVI-1.0] Length = 340 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 52/332 (15%), Positives = 104/332 (31%), Gaps = 26/332 (7%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 K + E + N W+P ++P+ +D+ WK L+ D + + Sbjct: 20 KNNFQGNLRSVNWNLVDDEKDLEVWNRIVQNFWLPEKIPVSNDIPSWK---KLSKDWQDL 76 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I + +++ A + H + AF VH+ ++ I ++L Sbjct: 77 ITKTFTGLTLLDTIQATIGDICQIDHALTDHEQVIYANFAFMVGVHARSYGTIFSTLCTS 136 Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 E S+ +A + Y TG + L G Sbjct: 137 EQINAAHEWVVNTESLQKRAKALIPYY---------TGNDPLKSKVAAALMP------GF 181 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 Y GF L ++ ++ + I+RD+ +H + + + P KE + Sbjct: 182 LLYGGFYLPFYLSSRKQLPNTSDIIRLILRDKVIHNYYSGYKYQRKLEKLPLAKQKEMKA 241 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-- 317 +++ LE Y E + ++ + A + +G + F E Sbjct: 242 FVFELMYRLIELEKDYLKELYEGFGI---VDDAIKFSVYNAGKFLQNLGYDSPFTAAETR 298 Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 P + + +FF + Y G Sbjct: 299 IKPEIFAQLSARADENHDFFSGNGSSYVMGVS 330 >gi|31544249|ref|NP_852827.1| ribonucleoside-diphosphate reductase subunit beta [Mycoplasma gallisepticum str. R(low)] gi|26398734|sp|Q9XC20|RIR2_MYCGA RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit gi|5565932|gb|AAD45275.1|AF152114_3 ribonucleoside-diphosphate reductase beta chain [Mycoplasma gallisepticum] gi|31541093|gb|AAP56395.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma gallisepticum str. R(low)] gi|284930288|gb|ADC30227.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma gallisepticum str. R(high)] Length = 339 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 52/333 (15%), Positives = 113/333 (33%), Gaps = 29/333 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + ++ + + N + K W N W+P ++P+ +DL W N LT + Sbjct: 19 ANGQKGVMRSINWNVINDPKDLEVW---TRVTQNFWLPEKIPVSNDLKSW---NELTPEW 72 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + ++ R +++ +A + + +F VH+ ++ I ++L Sbjct: 73 KQLVTRTFTGLTLLDTIQCTLGDIAQIPNSLTDHEQFVYANFSFMVGVHARSYGTIFSTL 132 Query: 139 GLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 + E + A+A + + Y + L+ + Sbjct: 133 NTSDEIEEAHEWVINNEKLQARAKFLVPYY--------------TSDDPLKSKI-AAALM 177 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 G Y GF L K+ ++ + I+RD+ +H + + P +E Sbjct: 178 PGFLLYGGFYLPFYLAARGKLPNTSDIIRLILRDKVIHNYYSGYKYRLKVQKLPKEKQEE 237 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +++ +L++ LE + E + A + + A + G E F Sbjct: 238 YKKFVFEILYKLIELEKDFLRELYDGFGL---ADEAIAFSLYNAGKFLQNCGYESPFTPE 294 Query: 317 E---NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 E +P + + +FF + Y G Sbjct: 295 ETKISPEVFAQLSARADENHDFFSGNGSSYIMG 327 >gi|262184725|ref|ZP_06044146.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium aurimucosum ATCC 700975] Length = 306 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 115/319 (36%), Gaps = 31/319 (9%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL W+ +T +ER + R + +++ A + Sbjct: 8 EVWNRLTANFWLPEKVPLSNDLPAWQ---RMTPEERNLTMRVFTGLTTLDTVQATVGEIC 64 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANW 161 + AF ++VH+ ++ + ++L + E + + A+A Sbjct: 65 QIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLSSTKEIDEAYRWAVNNDLLQARAKK 124 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 L + D + + + ++ Y GF L + A Sbjct: 125 VLAHY----------FGPDPLKRKVSSTLLSSLLL-----YAGFYLPLHFSVHATLTNTA 169 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + + I+RD+++H + + L KE + ++L E LE+ Y+ E Sbjct: 170 DMIRLILRDKAVHGYYSGYKYQRGLESTTPLRQKEMHDFTISLLEELYALELDYSGELYE 229 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFET 338 + ++++ AN+ +G F E NP + + +FF Sbjct: 230 PLGL---MDDVAVFVRYNANKALMNLGYPDYFPPEETEVNPEILAALAPGADENHDFFSG 286 Query: 339 RVTEYQQG-----AELKWD 352 + Y G ++ WD Sbjct: 287 SGSSYVIGTAEETSDDDWD 305 >gi|269865524|ref|XP_002651954.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063427|gb|EED42101.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 205 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 25/201 (12%) Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 FN +PSI KA WA ++ A V + EG++F F Sbjct: 14 FNAIENIPSIRKKALWAQKWI--------------ASDTSFDTRCVAFACVEGIFFSGSF 59 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L + M G+ + I RDE LH +F + I + ++ Sbjct: 60 AAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNKCT---------VIEDIV 110 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 EA +E + E++P +G+N QY++F+A+R +G + ++ + NPF +M E Sbjct: 111 REAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-E 168 Query: 326 VIDLKKEKNFFETRVTEYQQG 346 I L+ + NFFE R YQ+G Sbjct: 169 NISLQGKTNFFERREANYQKG 189 >gi|284931055|gb|ADC30993.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma gallisepticum str. F] Length = 339 Score = 165 bits (419), Expect = 6e-39, Method: Composition-based stats. Identities = 52/333 (15%), Positives = 112/333 (33%), Gaps = 29/333 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 + ++ + + N + K W N W+P ++P+ +DL W N LT + Sbjct: 19 ANGQKGVMRSINWNVINDPKDLEVW---TRVTQNFWLPEKIPVSNDLKSW---NELTPEW 72 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + ++ R +++ +A + + +F VH+ ++ I ++L Sbjct: 73 KQLVTRTFTGLTLLDTIQCTLGDIAQIPNSLTDHEQFVYANFSFMVGVHARSYGTIFSTL 132 Query: 139 GLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 + E + A+A + + Y + L+ + Sbjct: 133 NTSDEIEEAHEWVINNEKLQARAKFLVPYY--------------TSDDPLKSKI-AAALM 177 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 G Y GF L K+ ++ + I+RD+ +H + + P +E Sbjct: 178 PGFLLYGGFYLPFYLAARGKLPNTSDIIRLILRDKVIHNYYSGYKYRLKVQKLPKEKQEE 237 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 +++ +L + LE + E + A + + A + G E F Sbjct: 238 YKKFVFEILDKLIELEKDFLRELYDGFGL---ADEAIAFSLYNAGKFLQNCGYESPFTPE 294 Query: 317 E---NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 E +P + + +FF + Y G Sbjct: 295 ETKISPEVFAQLSARADENHDFFSGNGSSYIMG 327 >gi|68535290|ref|YP_249995.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium jeikeium K411] gi|68262889|emb|CAI36377.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium jeikeium K411] Length = 338 Score = 165 bits (419), Expect = 6e-39, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 123/335 (36%), Gaps = 34/335 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ +N W+P +VP+ +DL W N LTD ER + + Sbjct: 25 NWNRLDDQKDLEIWQ---RLTSNFWLPEKVPLSNDLPTW---NALTDAERELTTKVFTGL 78 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A ++ + AF +AVH+ ++ + +++ E + Sbjct: 79 TLLDTVQATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSEEINAAYT 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P++ +A +Q+ + V + + Y GF Sbjct: 139 WAIGNPALQRRATAVMQHY---------------YGDDPLKRKVAATLLSSLLLYAGFYL 183 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L ++ A+ + I+RD+++H + + +P + E ++ + T++ E Sbjct: 184 PLWFSCRGTLMNTADMIRLILRDKAVHGYYSGYKFQRGLEAHPE-RSAELEEFTFTLVEE 242 Query: 268 ATLLEIAYAHETMPKGFVGLNA--PSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPW 322 LE Y+ + + + ++ + A++ +G P ++ P Sbjct: 243 LLELEKEYSGDLYGETLPDEKSLIDGVMAFVHYNADKALMNLGYPPQYEEEAAKTEPEII 302 Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + D + +FF + Y G E WD Sbjct: 303 AALAPDSNETHDFFSGSGSSYVIGRAESTEEDDWD 337 >gi|225434341|ref|XP_002276454.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 841 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 9/169 (5%) Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 + + + EG++F F I L + M G+ + I R E LH +F + Sbjct: 666 SSTLFAERLIAFACVEGIFFSGSFCAIFWLKKKGLMPGLTFSNELISRYEGLHCDFACLL 725 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 + ++ + P QK ++HEA +E + E +P +G+ A Y++F+ + Sbjct: 726 YSLLQKQLPW-------QKVHHIVHEAMEIETQFICEALPCALIGMKATLMSHYIKFVVD 778 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 R +G E + ENPF WM E I L+ NFF+ R+ +YQ+ + + Sbjct: 779 RLLVALGYERKYNV-ENPFDWM-EFIFLQGNANFFQRRMGDYQKASIMS 825 >gi|260578497|ref|ZP_05846410.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium jeikeium ATCC 43734] gi|258603378|gb|EEW16642.1| ribonucleoside-diphosphate reductase R2-2, beta subunit [Corynebacterium jeikeium ATCC 43734] Length = 338 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 121/335 (36%), Gaps = 34/335 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ +N W+P +VP+ +DL W N LTD ER + + Sbjct: 25 NWNRLDDQKDLEIWQ---RLTSNFWLPEKVPLSNDLPTW---NALTDAERELTTKVFTGL 78 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A ++ + AF +AVH+ ++ + +++ E + Sbjct: 79 TLLDTVQATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSEEINAAYT 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P++ +A +Q+ + V + + Y GF Sbjct: 139 WAIGNPALQRRATAVMQHY---------------YGDDPLKRKVAATLLSSLLLYAGFYL 183 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L ++ A+ + I+RD+++H + + +P + E ++ + ++ E Sbjct: 184 PLWFSCRGTLMNTADMIRLILRDKAVHGYYSGYKFQRGLEAHPE-RSAELEEFTFALVEE 242 Query: 268 ATLLEIAYAHETMPKGFVGLNA--PSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPW 322 LE Y+ + + ++ + A++ +G P ++ P Sbjct: 243 LLELEKEYSGDLYGGTLPDEKSLIDGVMAFVHYNADKALMNLGYPPQYEEEAAKTEPEII 302 Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + D + +FF + Y G E WD Sbjct: 303 AALAPDSNETHDFFSGSGSSYVIGRAESTEEDDWD 337 >gi|313892092|ref|ZP_07825688.1| ribonucleoside-diphosphate reductase, beta subunit [Dialister microaerophilus UPII 345-E] gi|329121529|ref|ZP_08250153.1| ribonucleotide-diphosphate reductase subunit beta [Dialister micraerophilus DSM 19965] gi|313119484|gb|EFR42680.1| ribonucleoside-diphosphate reductase, beta subunit [Dialister microaerophilus UPII 345-E] gi|327469444|gb|EGF14914.1| ribonucleotide-diphosphate reductase subunit beta [Dialister micraerophilus DSM 19965] Length = 338 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 113/333 (33%), Gaps = 34/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W N W+P +PM +D+ W + L+DD + ++ R Sbjct: 29 NWNVMNDDKDLEVWN---RVTQNFWLPENIPMSNDIPSWNT---LSDDWKQLVTRTFTGL 82 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A+ +A ++ + AF VH+ ++ I ++L E E Sbjct: 83 TLLDTVQASIGDIAQIKNSVTDHEQVIYANFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 142 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 ++ A+A + Y TG + L G Y GF Sbjct: 143 WVVNNDALQARAKLLIPYY---------TGDDPLRSKVAAALMP------GFLLYGGFYL 187 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L K+ ++ + I+RD+ +H + Q + E ++ ++ E Sbjct: 188 PFYLASRAKLPNTSDMIRLILRDKVIHNYYSGYKYQQKIAKENDARKAEMKKFVFDLMEE 247 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324 LE Y + + A ++ + A + +G + F E P + Sbjct: 248 EIELEKIYLRDLYKGFDI---ADDAIRFSVYNAGKFLQNLGYDSPFSEEETHIAPEVFAQ 304 Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + +FF + Y G + WD Sbjct: 305 LSARADENHDFFSGSGSSYVIGTTEETTDEDWD 337 >gi|293556439|ref|ZP_06675017.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] gi|291601403|gb|EFF31677.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] Length = 316 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 70/309 (22%), Positives = 126/309 (40%), Gaps = 28/309 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A W+ T VP+ +DL WK+ L+D E+ ++K+ +G A ++L + + A+ Sbjct: 20 WDKATAQFWLDTRVPVSNDLLDWKN---LSDVEKKVVKKAVGGLALLDTLQSEEGLYALK 76 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWAL 163 ++ + + L F E++H+ T+ I+ SL D E+++ P + KA Sbjct: 77 KNARTQKEKAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYDWMNNDPKMQFKAEKI- 135 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + + GT + V V EG+ +Y+ F L NK+ +AE Sbjct: 136 -------NEVYQNGTP-------MQVKVASVFLEGILYYSNFFIPLWYRGQNKLANLAEL 181 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + ++RDES+H + Q E EF T L+E E AY E + Sbjct: 182 IKLVIRDESVHGTYLGYKFRQDFEELTLEEKDEFTNWMYTFLNELLKNEFAYTEEVYSEI 241 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK----YTENPFPWMSEVIDLKKEKNFFETR 339 + + ++++ AN+ +G F+ NP M+ + +FF Sbjct: 242 GL---VEDIKTFVKYNANKSLQNMGFGIYFEDALVNDVNPIV-MNGISIETANHDFFSQV 297 Query: 340 VTEYQQGAE 348 Y G Sbjct: 298 GAGYLMGGA 306 >gi|254362523|ref|ZP_04978626.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica PHL213] gi|153094123|gb|EDN75022.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia haemolytica PHL213] Length = 293 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 118/296 (39%), Gaps = 19/296 (6%) Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 + TE D+ +++ + D ER ++ R + + E V +Y + PE Sbjct: 1 LHTEFNFTGDIQDYRT--TINDHERHVLTRAMLAISQVEVNV-KRFWGELYCYFPKPEMD 57 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 A E H + +++ LGL+ E+F+ E+ + + + SF Sbjct: 58 DVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIHEIEPLMNRIRYM---------ESF 106 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESL 233 EF+ L +F + E + + F ++S + N GI+ + ++E + Sbjct: 107 MKDKDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMSFNKHKNLFKGISNAVEATSKEEEI 166 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-NAPSC 292 H FGI + ++ E+ L+T EF + +T+ ++A E +G + + Sbjct: 167 HGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAFEAERGILDWIFEEGDLSFITKATV 226 Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQ 345 E Y++ N +GLEP W I KE +FF R T+Y + Sbjct: 227 ENYIKNRYNNSLSILGLEPPHDIDPELLKETEWFDIEILSTKETDFFNKRSTDYSK 282 >gi|9628063|ref|NP_042657.1| ribonucleotide reductase, small subunit [Equid herpesvirus 2] gi|82013696|sp|Q66662|RIR2_EHV2 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|695233|gb|AAC13848.1| ribonucleotide reductase, small subunit [Equid herpesvirus 2] Length = 305 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 58/302 (19%), Positives = 108/302 (35%), Gaps = 20/302 (6%) Query: 47 LSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYR 106 N W P+++ + D+A L + K F A +E LV NI A+ Sbjct: 21 QETWQNRWFPSQISLTSDVA---CLQSLNPRDLEFYKFLFSFLAMAEKLVNFNI-QALVA 76 Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166 + + Y Q E +H + I+ + V + A + Sbjct: 77 DFHSHDLEHYYTEQEAMENIHGKVYANILNMFFKN---------NVGEMQKYAREIVGDE 127 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + + G + + + VF ++ EG++F + F I +L M G+ Y Sbjct: 128 ALAAKLHWLHGRVSEAKTRAEKVLVF-LLIEGIFFISSFYSIATLRVRGLMNGVCMANDY 186 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 I RDE +H + N + + K + + EA +E + +G Sbjct: 187 ISRDEWVHTRAAALLFNTLVPDE----EKPSPEWIGALFREAVEVEYNFI-LAKGRGVSH 241 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 +N ++++ A+R I + P++ T+ P K NFFE ++Y Sbjct: 242 VNVADINRFLEATADRILKSINVGPVYG-TQPPPNCPLVYTGCLKNVNFFERESSDYTTA 300 Query: 347 AE 348 + Sbjct: 301 VD 302 >gi|293363858|ref|ZP_06610594.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma alligatoris A21JP2] gi|292552348|gb|EFF41122.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma alligatoris A21JP2] Length = 340 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 52/322 (16%), Positives = 107/322 (33%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W N W+P ++P+ +D+ W++ L+D+ + +I R Sbjct: 31 NWNIIDDDKDLEVWN---RITQNFWLPEKIPVSNDIPSWRT---LSDEWQTLITRTFTGL 84 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A + + AF AVH+ ++ I ++L E E Sbjct: 85 TMLDTIQATVCDIAQIPNSLTDHEQVIYANFAFMVAVHARSYGTIFSTLCSSEQIEEAHE 144 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + + +A L Y E V + G Y GF Sbjct: 145 WVIDNEDLQERARLLLPYYHN---------------EDPLKSKVAAALMPGFLLYGGFYL 189 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L +K+ ++ + I+RD+ +H + + E + +L + Sbjct: 190 PFWLSARSKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVARLSEARKAEMKTFVFELLDK 249 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 + E + + A ++ + A + +G + F E P + Sbjct: 250 LIVAEKKFLTKLYEG---FDLADDAIRFSVYNAGKFLQNLGYDSPFTEEETRIEPEIFAQ 306 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 307 LSARADENHDFFSGNGSSYVMG 328 >gi|222834323|gb|EEE72800.1| predicted protein [Populus trichocarpa] Length = 146 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 81/119 (68%), Positives = 99/119 (83%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG Sbjct: 25 HKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPNG 84 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 LT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +Q Sbjct: 85 LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 143 >gi|152991848|ref|YP_001357569.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp. NBC37-1] gi|151423709|dbj|BAF71212.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp. NBC37-1] Length = 337 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 145/341 (42%), Gaps = 22/341 (6%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 + +D+K + + KY W Y N W P+EV + K+ Sbjct: 8 NPQGEEILDEKIYGGSPTGFVDFNRSKYRWDSNIYDLMNANTWFPSEVNTSTEK---KNF 64 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 LTD+E+ + K + ++S + R +N + + Q +E HS ++ Sbjct: 65 EALTDNEQSIYKMTFAQLSFNDSAQ-EEYLSDFRRLANNRLVKSVISLQIMQEVNHSKSY 123 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 ++ + G E E+FN+Y K + AL + F + + + Sbjct: 124 AVLLDACGNSE-EVFNLY--------KYDAALNKKNLQVAEQFAKYIDGGSADKMLLSAM 174 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES-LHLNFGIDVINQIKIENP 250 V EG++F GF+ I LG +K+ G + ++I RDE HL ++ I+ EN Sbjct: 175 ASVNLEGIYFLLGFSYIYLLG--DKVPGARDMIKFIARDELNTHLPLFANIFKTIQKENN 232 Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGL 309 + M+ +A +E+ Y H + + +G+ EQ + AN R +IGL Sbjct: 233 --IATSTIDAAYKMIQDAVKIELEYGHYLLDQFPIMGVTHELMEQTVYNYANDRLKKIGL 290 Query: 310 EPLFKYTENPF--PWMSEVIDLKK-EKNFFETRVTEYQQGA 347 +P+F + + +++ +++ + + NFFE+ V+ Y + + Sbjct: 291 DPIFDESATTYLQKLVTKHLEMNEVKSNFFESNVSNYAKSS 331 >gi|15829010|ref|NP_326370.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma pulmonis UAB CTIP] gi|14089954|emb|CAC13712.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (RIBONUCLEOTIDE REDUCTASE) [Mycoplasma pulmonis] Length = 341 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 116/333 (34%), Gaps = 29/333 (8%) Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78 +++ R + N++ K W C N W+P ++P+ +DL W+S L Sbjct: 21 LNNFRGKMRSVNWNKIDDEKDLEVWN---RVCQNFWLPEKIPVSNDLETWRS---LDPIW 74 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + +I R +++ A +A H + AF A+H+ ++ I ++L Sbjct: 75 QKVITRTFTGLTLLDTIQATIGDIAQLPHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTL 134 Query: 139 GLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 E E S+ +A + + TG + L Sbjct: 135 CSTEQINEAHEWVINTKSLQDRAKILIPFY---------TGKDPLKSKVAAALMP----- 180 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 G Y GF L K+ ++ + I+RD+ +H + + + KE Sbjct: 181 -GFLLYGGFYLPFYLSSRMKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVEKLSLEKQKE 239 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 ++ +L++ LE Y +E + + A ++ + A + +G + F Sbjct: 240 MKEFVFDLLYKLIDLEKKYLYELYEEIGL---AEDAIKFSLYNAGKFLQNLGYDSPFTSE 296 Query: 317 ENPFP---WMSEVIDLKKEKNFFETRVTEYQQG 346 E + + +FF + Y G Sbjct: 297 ETKIDAEIFSQLSARADENHDFFSGNGSSYVMG 329 >gi|308814593|ref|YP_003934867.1| ribonucleotide reductase B subunit [Shigella phage SP18] gi|308206185|gb|ADO19584.1| ribonucleotide reductase B subunit [Shigella phage SP18] Length = 392 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 64/329 (19%), Positives = 129/329 (39%), Gaps = 39/329 (11%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P EV + D A + N L + ++ + NL + + +S+ Sbjct: 32 RHKVFEELTEKQLSFFWRPEEVNLMMDGAQF---NKLPEHQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A+ +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPAAALAALVSDPSLDTWIQTWTFSETIHSRSYTHIMRNLYTDPAKVFDEILLDDAIMK 148 Query: 158 KANWALQYTQTLSSPSFTT-----------GTKDADQ-----------------EFLQDL 189 +A Y + + + T +AD+ + L Sbjct: 149 RAESIGHYYDDVLNKTRQWQNQIAFVELAKETPEADERLERAIKQESIAKRALMKSLYLC 208 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 E + FY FA + + M G A+ ++I RDE LHL ++ Q++ Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYILRQLQTG 268 Query: 249 -NPHLWTK---EFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303 + W K E + ++ + E E +A G + L+ +++ ++ R Sbjct: 269 VDGDEWVKIAHECEAEAAAIFMEVNRQEKEWAVHLFKDGGLPGLSVEILNRFIDYLTVSR 328 Query: 304 CHQIGL--EPLFKYTENPFPWMSEVIDLK 330 Q GL E + + T++P PW+ E ++ Sbjct: 329 MKQCGLPCEIVLESTKHPIPWIREYLNSD 357 >gi|303232548|ref|ZP_07319234.1| ribonucleoside-diphosphate reductase, beta subunit [Atopobium vaginae PB189-T1-4] gi|302481335|gb|EFL44409.1| ribonucleoside-diphosphate reductase, beta subunit [Atopobium vaginae PB189-T1-4] Length = 351 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 57/324 (17%), Positives = 106/324 (32%), Gaps = 29/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +P+ +DL W + L + + +I R Sbjct: 42 NWNRIADDKDLEVWN---RVTQNFWLPENIPVSNDLPSWNT---LDERWQQLIIRTFTGL 95 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A+ +A RH + AF AVH+ ++ I ++L E E Sbjct: 96 TLLDTVQASVGDVAQIRHAITDIEQANYANFAFMVAVHARSYGTIFSTLCSSEQIDEAQA 155 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 ++ A+A + Y Q+ V + G Y GF Sbjct: 156 WVVHNDALQARAQALIPYY---------------TQDDALKSKVAAALMPGFLLYGGFYL 200 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L K+ ++ + I+RD+ +H + Q ++ +L+ Sbjct: 201 PFYLSARGKLPNTSDMIRLILRDKVIHNYYSGYKYQQKLKRLAADEQAAMKEFVFDLLYH 260 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE Y E A + + A + +G + F E P + Sbjct: 261 LIDLEKTYLRELYDG---FDLADDAIAFSLYNAGKFLQNLGYDSPFTAQETHIEPEVFAQ 317 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348 + +FF + Y G Sbjct: 318 LSARADENHDFFSGSGSSYVIGTA 341 >gi|85057306|ref|YP_456222.1| ribonucleotide-diphosphate reductase subunit beta [Aster yellows witches'-broom phytoplasma AYWB] gi|84789411|gb|ABC65143.1| ribonucleoside-diphosphate reductase beta chain [Aster yellows witches'-broom phytoplasma AYWB] Length = 350 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 66/349 (18%), Positives = 131/349 (37%), Gaps = 25/349 (7%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 ++ + + K ++ N L KY Y + W P ++ +Q DLA W Sbjct: 1 MKTKNPQPQTNSKIHFQG-ANWNVLED-KYTHF--FYEQNLSQFWRPEDISLQGDLAAW- 55 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE--CRQYLLRQAFEEA-V 126 + LT +E+ RNL ++ + + I R L E + L E V Sbjct: 56 --SELTIEEKTAYSRNLLVLTFLDTYQGDLGMPIIARSLEEHEHQKKATLNFMGAMENAV 113 Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTT------GT 178 H+ ++ I S ++ +LF + S+ ++ + L + Sbjct: 114 HAKSYSNIFMSYLTNKEINQLFLWGNQQKSLQTMMQVIVKVYEALEDQIYLKKQTSLQFI 173 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + ++ V E FY+GF L K++ E I+RDES+H + Sbjct: 174 ELEFKKTQWKAMAVSVFLETWLFYSGFYYPLYFYGQGKLMQSGEIINLIIRDESIHGVY- 232 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP-SCEQYMQ 297 + ++ E L+ K +Q +T L + + + LN ++++ Sbjct: 233 ---VGRLATELYQLFDKPTKQTLKTWLDDLMQQLYQTKTSLVNAIYHKLNLEDDVNKFVR 289 Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345 + AN+ +G + F +EN P + ++ + + + F + YQ+ Sbjct: 290 YNANKALMNLGFDAFFP-SENVNPVIINGLNTETKTMDNFSMKGNGYQK 337 >gi|51518029|ref|YP_067954.1| BaRF1 [Macacine herpesvirus 4] gi|18025480|gb|AAK95424.1| BaRF1 [Macacine herpesvirus 4] Length = 302 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 67/294 (22%), Positives = 107/294 (36%), Gaps = 20/294 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W + + D K L + + K F A +E LV NI + + Sbjct: 23 NRWFAAHIVLTKDCGCLK---LLNERDLEFYKFLFTFLAMAEKLVNFNI-DELVTSFESH 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 + Y Q E VH T+ I+ L + N Y E A+ L + Sbjct: 79 DIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAE----------AIMADGALQA 128 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 K A L + + +++ EG++F + F I L M G+ YI RDE Sbjct: 129 KISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGVCLANNYISRDE 188 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 LH + N + + Q + + A +E A+ E G ++ + Sbjct: 189 LLHTRAASLLYNSMTA----PADRPGAQWIQELFRTAVEVETAFI-EARGWGVTLVDVQA 243 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 Q+++ A+R IGL PL+ T P + K+ NFFE +Y Sbjct: 244 IRQFLEATADRILGDIGLPPLYG-TPPPRDCPLTYMTSIKQTNFFEQESADYTM 296 >gi|269302771|gb|ACZ32871.1| ribonucleoside-diphosphate reductase beta subunit, truncated [Chlamydophila pneumoniae LPCoLN] Length = 159 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 92/143 (64%), Positives = 113/143 (79%), Gaps = 2/143 (1%) Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 KRV V K ++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LWKS + Sbjct: 11 KRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS-DE 69 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HTF Y Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHTFLY 129 Query: 134 IITSLGLDEGELFNMYREVPSIT 156 I SLGLDEGE+FN Y E SI Sbjct: 130 ICESLGLDEGEVFNAYNERASIF 152 >gi|213023521|ref|ZP_03337968.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 256 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 93/266 (34%), Gaps = 23/266 (8%) Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 1 TLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYA 60 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P + KA L + E L+ V E FY+GF Sbjct: 61 WSEENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWL 105 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 106 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKLFALDLLME 165 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324 EI Y + G + ++ + AN+ +G E LF NP + Sbjct: 166 LYDNEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAA 222 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 223 LSPNADENHDFFSGSGSSYVMGKTVE 248 >gi|314121808|ref|YP_004063927.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage vB_EcoM-VR7] gi|313151565|gb|ADR32621.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage vB_EcoM-VR7] Length = 392 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 64/329 (19%), Positives = 128/329 (38%), Gaps = 39/329 (11%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P EV + D A + N L + ++ + NL + + +S+ Sbjct: 32 RHKVFEELTEKQLSFFWRPEEVNLMMDGAQF---NKLPEHQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 A+ +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPAAALAALVSDPSLDTWIQTWTFSETIHSRSYTHIMRNLYTDPAKVFDEILLDDAIMK 148 Query: 158 KANWALQYTQTLSSPSFTT-----------GTKDADQ-----------------EFLQDL 189 +A Y + + + T + DQ + L Sbjct: 149 RAESIGYYYDDVLNKTRQWQNQIAFVELAKETPEVDQRLERAIKQEAIAKRALMKSLYLC 208 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 E + FY FA + + M G A+ ++I RDE LHL ++ Q++ Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYILRQLQTG 268 Query: 249 -NPHLWTK---EFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRR 303 + W K E + ++ + E E +A G + L+ +++ ++ R Sbjct: 269 VDGDEWVKIAHECEAEAAAIFMEVNRQEKEWAVHLFKDGGLPGLSVEILNRFIDYLTVSR 328 Query: 304 CHQIGL--EPLFKYTENPFPWMSEVIDLK 330 Q GL E + + T++P PW+ E ++ Sbjct: 329 MKQCGLPCEIVLESTKHPIPWIREYLNSD 357 >gi|312162814|ref|YP_003933799.1| ribonucleotide reductase subunit 2 [Saimiriine herpesvirus 1] gi|308096447|gb|ADO13787.1| ribonucleotide reductase subunit 2 [Saimiriine herpesvirus 1] Length = 338 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 70/350 (20%), Positives = 122/350 (34%), Gaps = 29/350 (8%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 A +T L P+ + +D + + + N W+ TE+ Sbjct: 4 AESTALFPVSSPCPEEVGNDYPVPTCPHPERYFYTSQCPDINHLRSLSILNRWLETELVF 63 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 D LT E + F ++++ LV N+ + + Y + Q Sbjct: 64 AGDEED---VAALTPGELGFYRFLFTFLSAADDLVTENL-GNLAALFPQKDILHYYVEQE 119 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSITAKANWALQYTQTLSSPSFTTG 177 EAVH+ + + L + Y P+I K W Sbjct: 120 CIEAVHARVYGIVQLVLFANNEASRREYVAHTINHPAIRDKVEWLE-------------- 165 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 + + + + ++ ++ EG++F FA I L N + + I RDE++H Sbjct: 166 ARVGECSSVAEKYILMILIEGVFFAASFAAIAFLRTNNLLRVTCQSNDLISRDEAIHTTA 225 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP---SCEQ 294 + N P K + + EA +EI + H P+ L+A + Sbjct: 226 SCYIYNNYLTGYP----KPSTDRIHYLFREAVEIEIRFIHSQAPRDSHILDAAALRQIDN 281 Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 Y+ F A+R I L PLF + ++ +K NFFE+R T Y Sbjct: 282 YVHFCADRLLKMIKLPPLFDAPAPDCSFPLALMFTEKHTNFFESRSTAYA 331 >gi|39938541|ref|NP_950307.1| ribonucleotide-diphosphate reductase subunit beta [Onion yellows phytoplasma OY-M] gi|39721650|dbj|BAD04140.1| ribonucleotide reductase beta subunit [Onion yellows phytoplasma OY-M] Length = 350 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 66/330 (20%), Positives = 127/330 (38%), Gaps = 24/330 (7%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 ++ N L KY Y + W P ++ +Q DLA W + LT +E+ RNL Sbjct: 19 ANWNVLED-KYTHF--FYEQNLSQFWRPEDISLQGDLAAW---SELTLEEKTAYSRNLLV 72 Query: 89 FASSESLVANNIVLAIYRHLSNPE--CRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--G 143 ++ + + I R L E + L E VH+ ++ I S ++ Sbjct: 73 LTFLDTYQGDLGMPVIARSLEEHEHQKKATLNFMGAMENAVHAKSYSNIFMSYLTNKEIN 132 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTT------GTKDADQEFLQDLFVFYVVFE 197 +LF + S+ ++ + L + ++ ++ V E Sbjct: 133 QLFLWGNQQTSLQTMMQVIVKVYEALEDQIYLKKQSSLQFSELEFKKTQWQAMAVSVFLE 192 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 FY+GF L K++ E I+RDES+H + + ++ E L+ K Sbjct: 193 TWLFYSGFYYSLYFYGQGKLMQSGEIINLIIRDESIHGVY----VGRLATEIYQLFDKPT 248 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP-SCEQYMQFIANRRCHQIGLEPLFKYT 316 QQ +T L + + + LN +++++ AN+ +G + F + Sbjct: 249 QQTLKTWLDDLMQQLYQAQTSLVHAIYHKLNLEDDVNKFVRYNANKALMNLGFDAFFP-S 307 Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345 EN P + ++ + + + F + YQ+ Sbjct: 308 ENVNPVIINGLNTETKTMDNFSMKGNGYQK 337 >gi|237784654|ref|YP_002905359.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium kroppenstedtii DSM 44385] gi|237757566|gb|ACR16816.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium kroppenstedtii DSM 44385] Length = 350 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 56/347 (16%), Positives = 124/347 (35%), Gaps = 46/347 (13%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+L K W+ N W+P +VP+ +D++ W N L DD R + + Sbjct: 25 NWNRLQDPKDLEVWQ---RLTGNFWLPEKVPLSNDISSW---NSLPDDLRQLTVKIFTGL 78 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ A ++ + AF ++VH+ ++ + ++L + + Sbjct: 79 TLLDTVQATVGEVSQIPDGRTEHEQAVYTNIAFMQSVHARSYSSVFSTLCSTPEITDAYG 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + + +A +++ +D + + + ++ Y GF Sbjct: 139 WATQNTVLQRRATTVMKHYYA----------RDPLKRKVAATLLSSLLL-----YAGFYL 183 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L L K++ A+ + I+RD+++H + + +P E Q+ + +++ E Sbjct: 184 PLWLSCRAKLMNTADMIRLILRDKAVHGYYSGYKFQRGLDAHPERKN-ELQEFTYSLVDE 242 Query: 268 ATLLEIAYAHETMPKGFVGLNAPS--------------CEQYMQFIANRRCHQIGLEPLF 313 LE Y+ E N+ ++ + AN+ +G L+ Sbjct: 243 LLNLEKIYSGELYGGITAPNNSHKSAESSFTSRPNFAGVMAFVYYNANKALMNLGYPALY 302 Query: 314 K---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + P + + + +FF Y G E WD Sbjct: 303 EDEAERTEPDILAALTPEASETHDFFSGSGASYVIGKTEATEESDWD 349 >gi|300859142|ref|YP_003784125.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium pseudotuberculosis FRC41] gi|300686596|gb|ADK29518.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium pseudotuberculosis FRC41] gi|302206836|gb|ADL11178.1| Ribonucleoside-diphosphate reductase subunit beta [Corynebacterium pseudotuberculosis C231] gi|302331398|gb|ADL21592.1| Ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium pseudotuberculosis 1002] gi|308277088|gb|ADO26987.1| Ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium pseudotuberculosis I19] Length = 340 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 49/334 (14%), Positives = 117/334 (35%), Gaps = 33/334 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + E + +N W+P +VP+ +D+ W+ G+ ++ R ++ R Sbjct: 25 NWNHTEDPKDMEVWQRLTSNFWLPEKVPLSNDIPTWR---GMGENYRTLVTRTFTGLTLL 81 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150 +++ A ++ + AF +AVH+ ++ + ++L + E ++ Sbjct: 82 DTVQATVGEISQIPDARTEHEQAVYTNIAFMQAVHARSYSSVFSTLCSSAEIDEAYSWAV 141 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 P + +A+ + + + V + + Y GF L Sbjct: 142 SNPLLQQRASSVMSHY---------------YGDDPLKRKVASTLLSSLLLYAGFYLPLW 186 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 L +++ A+ + I+RD+++H + + P E + + + E Sbjct: 187 LSTRGQLMNTADMIRLILRDKAVHGYYSGYKYQRGLDAKPQ-RKDEMEDFTYSFCDELLA 245 Query: 271 LEIAYAHETMPKGFVGL----NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323 LE Y+ + ++ + A++ +G P ++ +P Sbjct: 246 LEKDYSADLYASVDTLEEPRPTIDGVMAFVYYNADKALMNLGYAPAYELQAAHVSPEIIA 305 Query: 324 SEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + + +FF + Y G E WD Sbjct: 306 ALTPESNETHDFFSGSGSSYIIGRAENTTESDWD 339 >gi|83722609|ref|YP_443887.1| ribonucleotide reductase subunit 2 [Papiine herpesvirus 2] gi|75905762|gb|ABA29294.1| UL40 [Papiine herpesvirus 2] Length = 339 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 73/355 (20%), Positives = 128/355 (36%), Gaps = 44/355 (12%) Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKY------GWAWEKYLSACNNHWMP 56 + P + G V D + + P +Y + N W+ Sbjct: 9 PAAAIQPRERGAAAAAVHDHPVPD---------PERYFYTTQCPDINHLRSLSILNRWLE 59 Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116 +E+ D GLTD+E + F ++++ LV N+ + + Y Sbjct: 60 SELVFAGDEED---VAGLTDEELNFYRFLFTFLSAADDLVTENL-GGLSGLFPQKDILHY 115 Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR----EVPSITAKANWALQYTQTLSSP 172 + Q E VHS + I L ++ + Y P+I K +W Q Sbjct: 116 YVEQEAIEVVHSRVYSIIQLVLFRNDEQARREYVARTIHHPAIRVKVDWLEARVQAC--- 172 Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 E + + F+ ++ EG++F FA I + N + + I RDE+ Sbjct: 173 -----------ESVPEKFILMILIEGIFFAASFAAIAYMRTNNLLRVTCQSNDLISRDEA 221 Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS- 291 +H + N + K ++ + EA +EI + P L+A + Sbjct: 222 VHTTASCYIYNNYLAGH----RKPEPERVYRLFREAVEIEIGFIRSQAPADSRILDAAAL 277 Query: 292 --CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 E Y++F A+R I ++PLF + ++ +K NFFE R T Y Sbjct: 278 AAIENYVRFSADRLLALIEMKPLFGAPAPAPSFPLNLMSTEKHTNFFERRSTAYA 332 >gi|83642896|ref|YP_438184.1| ORF60 [Ovine herpesvirus 2] gi|61971010|gb|AAX58095.1| ORF60 [Ovine herpesvirus 2] gi|78127895|gb|ABB22279.1| ribonucleotide-reductase small subunit-like protein [Ovine herpesvirus 2] Length = 305 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 64/304 (21%), Positives = 109/304 (35%), Gaps = 20/304 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 ++ N W P ++ + D+ K L++ E K F +E+LV NI Sbjct: 16 FFDLTQETFQNRWFPAQINLTADV---KCLGSLSEKEVAFYKYLFTFLGMAETLVNFNID 72 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + + + Y Q E VH + I+ L + + A A Sbjct: 73 ELVAG-FEIHDVKHYYCEQMAMECVHGKVYFNILNMLFKN---------NIAETRAFAES 122 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 L+ + G + + + +FY++ EG++F + F I L M G+ Sbjct: 123 VLEDEPLRKKLQWLEGKIKTAESAAEKVLIFYLI-EGIFFISSFYCIGLLRVKGVMPGVC 181 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 YI RDE LH + N + + K + + EA +E + Sbjct: 182 MANDYISRDELLHTRAAALLYNTVIPQEG----KPSEAWIIDLFKEAVSIEDEFIR-AKS 236 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 +N ++++ A+R + IGL FK +E P K +FFE T Sbjct: 237 GEVGFVNVADIRRFLEATADRLLNSIGLPVHFK-SEPPKSCPLTYTGCIKNVSFFEREST 295 Query: 342 EYQQ 345 EY Sbjct: 296 EYST 299 >gi|311993225|ref|YP_004010091.1| aerobic NDP reductase, small subunit [Enterobacteria phage CC31] gi|284178063|gb|ADB81729.1| aerobic NDP reductase, small subunit [Enterobacteria phage CC31] Length = 379 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 125/328 (38%), Gaps = 38/328 (11%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + W P EV + D A ++ L ++ + NL + + +S+ Sbjct: 20 RHRTFEELIEKQLSFFWRPEEVNLMTDRAQFE---KLPVGQQNVFLDNLKYQSLLDSIQG 76 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P + F E +HS ++ +I+ +L D ++F+ +I Sbjct: 77 RAPAAVLSALISDPSLDTWNQTWTFSETIHSRSYTHIMRNLLNDPAKVFDEIVLDEAIMK 136 Query: 158 KANWALQYTQTLSSPS------------------------FTTGTKDADQEFLQDLFVFY 193 +A Y + + + DA +E ++ L++ Sbjct: 137 RAETIGHYYDDVILKTRLWENAKERYEESLGSCQQNDIEMYEGYVIDAKRELMKALYLCL 196 Query: 194 VV---FEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI-- 247 V E + FY FA + + M G ++ ++I RDE LHL +I Q+++ Sbjct: 197 HVINGLEAIRFYVSFACTFNFHKNMEIMEGNSKIMKFIARDEQLHLKGTQYIIRQLQLGT 256 Query: 248 --ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRC 304 E +E +Q++ + E E +A G V L+ ++ ++ R Sbjct: 257 DGEEWVQIARECEQEAVDIFMEINRQEKEWAVHLWRDGGVPGLSVKILHDFIDYLTVSRM 316 Query: 305 HQIGLE-PLFKY-TENPFPWMSEVIDLK 330 GL P+ +P PW+ E ++ Sbjct: 317 RSCGLPCPITDAPVRHPIPWIREYLNSD 344 >gi|240047145|ref|YP_002960533.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma conjunctivae HRC/581] gi|239984717|emb|CAT04689.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma conjunctivae] Length = 344 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 53/322 (16%), Positives = 114/322 (35%), Gaps = 29/322 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W + + N W+P ++P+ +DL W+S L+ + +I R Sbjct: 35 NWNVINDPKDLEVWNRVVQ---NFWIPEKIPVSNDLDTWRS---LSPVWQRLITRTFTGL 88 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ A +A +H + AF VH+ ++ I ++L E E Sbjct: 89 TLLDTIQATIGDVAQIQHSLTDHEQVIYANFAFMVGVHARSYGTIFSTLCTSEEIEEAHE 148 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +A + + + L+ ++ G Y GF Sbjct: 149 WVINNKKLQERAKALIPFY--------------VSDDPLKSKVAAAMMP-GFLLYGGFYL 193 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L +K+ ++ + I+RD+ +H + + + +E + +L++ Sbjct: 194 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKYQRKVEKLSPEKQQEMKDFVFDLLYK 253 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE Y +E + + A ++ + A + +G + F E P + Sbjct: 254 LIDLEKEYLYELYEEVDL---AEPAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 310 Query: 325 EVIDLKKEKNFFETRVTEYQQG 346 + +FF + Y G Sbjct: 311 LSARADENHDFFSGNGSSYVMG 332 >gi|48696741|ref|YP_024565.1| ORF20 [Ostreid herpesvirus 1] gi|81986458|sp|Q6R7K3|RIR2_OSHVF RecName: Full=Ribonucleoside-diphosphate reductase small chain gi|41352405|gb|AAS00912.1| ORF20 [Ostreid herpesvirus 1] Length = 579 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 74/334 (22%), Positives = 145/334 (43%), Gaps = 36/334 (10%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D + + + D L P Y + ++ W TE+ + D+ W+ ++++ER Sbjct: 60 DHHKDIVGKYDHALLKPAVYQQLRDFATKMESSSWQQTEIDAESDIPTWEQ---ISENER 116 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 +++ L FFA ++LV + I + PEC+ ++ Q E VH + + +L Sbjct: 117 DCVRKVLAFFAVGDTLVKDRIAI-FADEFPLPECKDFIDWQTVNEGVHQRVYNNYLDALV 175 Query: 140 LDE---GELFNMYR--EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 D+ +L N Y+ E I K +W + + + ++ V V Sbjct: 176 KDKIYLADLVNAYKDPEFAPIKKKVDWLGKII-------------SVENDSRGEMVVGQV 222 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 E + F FA +L RA M + ++I RDE+LH F +++ + Sbjct: 223 CTEAIMFAASFAILLKF-RAPYMRALVLGNEFIRRDETLHFRFYAELLRLMP-------D 274 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 + ++ +L EAT +E+ +A +P+G + Q+++ N+ C + + P++ Sbjct: 275 RPSDERIAELLTEATEIELEFAEYVVPEGVKYITKDRLIQHVKANTNQVCEMLDINPIYF 334 Query: 315 YTE-----NPFPWMSEVIDLKKEKNFFETRVTEY 343 + +P +M+ + +K NFFE + TEY Sbjct: 335 DQKGNVLLSPLLYMNTLESEQKI-NFFEGKATEY 367 >gi|327198239|ref|YP_004306815.1| putative ribonucleotide reductase B subunit [Pseudomonas phage KPP10] gi|297591765|dbj|BAJ09185.1| putative ribonucleotide reductase B subunit [Pseudomonas phage KPP10] Length = 339 Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 126/319 (39%), Gaps = 19/319 (5%) Query: 36 PLKYGWAWEK-YLSACNNHWMPTEVPMQDDLALWKSKNGL------TDDERLMIKRNLGF 88 P Y WA E + A + HW + + DD + S +GL ++ + ++ + L Sbjct: 12 PFVYPWAVEAARVHAIDMHWDVHQADLTDDKQQYFSTSGLGTNQVPHENHKWLLDKTLSM 71 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 F + V + ++ N E R +L+ A E VH + G +G+ Sbjct: 72 FTEMDRTVGE-GYTKLLPYIKNNEIRNWLITAASREVVHQRAYALAAEEFGFTDGD---- 126 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 ++ S + + S++ + + EG+ + F + Sbjct: 127 WKAFASYKEMRDKLEVMGENRIDASWSE------PLQAACILAQLLTGEGVGLFGAFTVL 180 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 L++ R K++G + Q+ + DE+ H+ I V+ ++ + Q+ R ++ + Sbjct: 181 LNMKRCGKLIGFNDINQWSLADETDHVEKNIRVLKAMRKDLTPEENAILDQEIRYLIEDY 240 Query: 269 TLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 E+ Y KG L +Y+ ++ R + L + ENP PWM +I Sbjct: 241 REAEVKYLVLAFEKGPQHDLTFEQTVEYIDYLCRLRLFECELLKEHQVGENPLPWMEWMI 300 Query: 328 DLKKEKNFFETRVTEYQQG 346 + + NFFE +VT+Y Sbjct: 301 NAARHDNFFEKKVTDYSHS 319 >gi|15606660|ref|NP_214040.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5] gi|18202109|sp|O67475|RIR2_AQUAE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; AltName: Full=Ribonucleotide reductase small subunit; Contains: RecName: Full=Aae nrdB intein; AltName: Full=Aae RIR2 intein gi|2983879|gb|AAC07431.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5] Length = 696 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 57/285 (20%), Positives = 123/285 (43%), Gaps = 23/285 (8%) Query: 10 IQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67 I + ++++ +++ +L +KY WA++ Y N W+P E+ M +D Sbjct: 14 IFNPQGDREASKRKIIKGNPTNIFELNEIKYSWAFDLYKLMGFTNFWIPEEIQMLEDRKQ 73 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127 +++ L+D E+ + L F + +S + + R ++ PE + Q F+E+VH Sbjct: 74 YETV--LSDYEKRAYELVLSFLIALDSFQVDML-KEFGRMITAPEVEMAITAQEFQESVH 130 Query: 128 SHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 ++++Q+I+ S+ E++N +RE + + + + + + ++E Sbjct: 131 AYSYQFILESVVDPVKADEIYNYWREDERLLER--------NKVIAELYNEFIRKPNEEN 182 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 + + E ++FY+GFA +LGR KM +Q +YI RDE + + + Sbjct: 183 FIKATIGNYILESLYFYSGFAFFYTLGRQGKMRNTVQQIKYINRDELCFIEGTEVLTKRG 242 Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 ++ L + + +E T P +V + Sbjct: 243 FVDFRELREDDLVAQ--------YDIETGEISWTKPYAYVERDYE 279 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292 H+ ++IN ++ ENP L+T E ++ A EI + +G+N Sbjct: 576 CHVTLFRNIINTLRKENPELFTPEIEKWIVEYFKYAVNEEIKWGQYVTQNQILGINDVLI 635 Query: 293 EQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELK 350 E+Y++++ N R QIG +P++ TENP W+ E + + +FF+ + Y + ELK Sbjct: 636 ERYIKYLGNLRITQIGFDPIYPEVTENPLKWIDEFRKINNTKTDFFQAKPQTYSKANELK 695 Query: 351 W 351 W Sbjct: 696 W 696 >gi|56694763|ref|YP_164483.1| ribonucleotide reductase subunit 2 [Cercopithecine herpesvirus 2] gi|52843315|gb|AAU88106.1| small subunit of ribonucleotide reductase [Cercopithecine herpesvirus 2] Length = 325 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 70/322 (21%), Positives = 118/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ +E+ D GLTD+E + F Sbjct: 19 PERYFYTTQCPDINHLRSLSILNRWLESELVFAGDEED---VGGLTDEELNFYRFLFTFL 75 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI----ITSLGLDEGEL 145 ++++ LV N+ + + Y + Q E VHS + I + G E Sbjct: 76 SAADDLVTENL-GGLSGLFPQKDILHYYVEQEAIEVVHSRVYSIIQLVLFRNDGQARREY 134 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I K +W Q E + + F+ ++ EG++F F Sbjct: 135 VARTIHHPAIRVKVDWLEARVQAC--------------ESVPEKFILMILIEGIFFAASF 180 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K ++ + Sbjct: 181 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLAGHH----KPEPERVYRLF 236 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 EA +EI + P L+A + E Y++F A+R I ++PLF + Sbjct: 237 REAVEIEIGFIRSQAPADSRILDAAALAAIENYVRFSADRLLALIRMKPLFGAPAPAPSF 296 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ +K NFFE R T Y Sbjct: 297 PLSLMSTEKHTNFFECRSTAYA 318 >gi|66391280|ref|YP_238601.1| ORF025 [Staphylococcus phage Twort] gi|62637210|gb|AAX92321.1| ORF025 [Staphylococcus phage Twort] Length = 349 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 115/318 (36%), Gaps = 18/318 (5%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 + A + A + W+P + + D++ W N LTD E+ K+ L ++ + Sbjct: 26 EDEMANNFWELATTSFWLPEDFDISRDVSSW---NKLTDIEKDTYKKVLAGLTGLDTKQS 82 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPS 154 + I H Q F E++H+ ++ +I T+L L++ + + P Sbjct: 83 VEGMSLIAHHEPRTRFAQVYTAFDFYESIHAKSYSHIFTTLLLNKETNYLLNEWVEQEPH 142 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + KA + + + L P+ +T + V E FY+GF L L Sbjct: 143 LKKKAQYIGYFYEKLEQPNPSTFDR-------YMAKVASAFLESALFYSGFYYPLLLSGQ 195 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 MV I +DE+ H E + +L E++ Sbjct: 196 GVMVQSGTTIYKITQDEAYHGVGVGYTAQLDYQELTEEEQSKADALMYELLEVLYENEVS 255 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK 333 Y+H K + +Y+Q+ NR +G + F NP +D Sbjct: 256 YSHMLYDKLGL---TEDVIRYVQYNFNRALANLGFDDYFNPEPFNPIVNNQTNVDKLSNA 312 Query: 334 NFFETRVTEYQQGAELKW 351 +FF T+ +Y++ K Sbjct: 313 DFFSTKN-DYKRSMNTKD 329 >gi|323145837|gb|ADX32078.1| hypothetical protein [Pseudomonas phage P3_CHA] gi|323146023|gb|ADX32263.1| hypothetical protein [Pseudomonas phage PAK_P3] Length = 344 Score = 162 bits (410), Expect = 7e-38, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 126/319 (39%), Gaps = 19/319 (5%) Query: 36 PLKYGWAWEK-YLSACNNHWMPTEVPMQDDLALWKSKNGL------TDDERLMIKRNLGF 88 P Y WA E + A + HW + + DD + S +GL ++ + ++ + L Sbjct: 17 PFVYPWAVEAARVHAIDMHWDVHQADLTDDKQQYFSTSGLGTNQVPHENHKWLLDKTLSM 76 Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 F + V + ++ N E R +L+ A E VH + G +G+ Sbjct: 77 FTEMDRTVGE-GYTKLLPYIKNNEIRNWLITAASREVVHQRAYALAAEEFGFTDGD---- 131 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 ++ S + + S++ + + EG+ + F + Sbjct: 132 WKAFASYKEMRDKLEVMGENRIDASWSE------PLQAACILAQLLTGEGVGLFGAFTVL 185 Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 L++ R K++G + Q+ + DE+ H+ I V+ ++ + Q+ R ++ + Sbjct: 186 LNMKRCGKLIGFNDINQWSLADETDHVEKNIRVLKAMRKDLTPEENSILDQEIRYLIEDY 245 Query: 269 TLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 E+ Y KG L +Y+ ++ R + L + ENP PWM +I Sbjct: 246 REAEVKYLVLAFEKGPQHDLTFEQTVEYIDYLCRLRLFECELLKEHQVGENPLPWMEWMI 305 Query: 328 DLKKEKNFFETRVTEYQQG 346 + + NFFE +VT+Y Sbjct: 306 NAARHDNFFEKKVTDYSHS 324 >gi|148700272|gb|EDL32219.1| mCG1034315 [Mus musculus] Length = 213 Score = 162 bits (410), Expect = 7e-38, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 6/153 (3%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + E V +++ +L S + P++Y W Y A + W EV + +L W Sbjct: 64 ETEENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQARASFWTGEEVDLSKNLPHW-- 121 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 N L DE+ I L FFA+S+ +V N+V + + PE + Q E VHS Sbjct: 122 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPETHCFYGFQILIENVHSEM 180 Query: 131 FQYIITSLGLDEGEL---FNMYREVPSITAKAN 160 + +I + D + FN +P + KA+ Sbjct: 181 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKAD 213 >gi|82503214|ref|YP_401656.1| BaRF1 [Human herpesvirus 4] gi|139424488|ref|YP_001129453.1| BaRF1 [Human herpesvirus 4 type 2] gi|238055355|sp|P0CAP6|RIR2_EBVB9 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|238055356|sp|P0CAP7|RIR2_EBVA8 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|238055357|sp|P0C701|RIR2_EBVG RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|1334857|emb|CAA24843.1| unnamed protein product [Human herpesvirus 4] gi|23893602|emb|CAD53406.1| ribonucleoside-diphosphate reductase small chain [Human herpesvirus 4] gi|64173256|gb|AAY41106.1| unknown [Human herpesvirus 4] gi|82703964|gb|ABB89233.1| BaRF1 [Human herpesvirus 4] Length = 302 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 66/294 (22%), Positives = 110/294 (37%), Gaps = 20/294 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W + + D K L + + K F A +E LV NI + + Sbjct: 23 NRWFAAHIVLTKDCGCLK---LLNERDLEFYKFLFTFLAMAEKLVNFNI-DELVTSFESH 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 + Y Q E VH T+ I+ L + N Y E A+ + L + Sbjct: 79 DIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAE----------AIMADEALQA 128 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 K A L + + +++ EG++F + F I L M GI YI RDE Sbjct: 129 KISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDE 188 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 LH + N + + + + + A +E A+ E +G ++ + Sbjct: 189 LLHTRAASLLYNSMTAKA----DRPRATWIQELFRTAVEVETAFI-EARGEGVTLVDVRA 243 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +Q+++ A+R IG PL+ T P + K+ NFFE ++Y Sbjct: 244 IKQFLEATADRILGDIGQAPLYG-TPPPKDCPLTYMTSIKQTNFFEQESSDYTM 296 >gi|308178758|ref|YP_003918164.1| ribonucleoside-diphosphate reductase subunit beta [Arthrobacter arilaitensis Re117] gi|307746221|emb|CBT77193.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter arilaitensis Re117] Length = 341 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 116/331 (35%), Gaps = 30/331 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+++ K W N W+P +VP+ +DL W+ LT +ER + R Sbjct: 32 NWNRVVDDKDLEVWN---RLTANFWLPEKVPLSNDLPAWE---KLTQEERTLTMRVFTGL 85 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ A + + AF +AVH+ ++ + ++L E+ + Y Sbjct: 86 TMLDTVQATVGEICQIQDSQTEHEEAVYTNIAFMQAVHARSYSSVFSTLTSTP-EIDSAY 144 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 R WA+ D + + + + Y GF L Sbjct: 145 R----------WAIANDMLQERCKKVLTHYYGDDPLKRKVSSTLLSS--LLLYAGFYLPL 192 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + A+ + I+RD+++H + + + ++ + +L E Sbjct: 193 HFSVHATLTNTADMIRLILRDKAVHGYYSGYKYQRGLETQSPATQENMREFTYALLEELY 252 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326 LE+ Y+ E + ++++ AN+ +G F E NP + Sbjct: 253 ELELQYSGELYEPLGL---MDDVAVFVRYNANKALMNLGYPARFTPEETNVNPEILAALA 309 Query: 327 IDLKKEKNFFETRVTEYQQG-----AELKWD 352 + +FF + Y G ++ WD Sbjct: 310 PGADENHDFFSGSGSSYIIGKAEDTSDDDWD 340 >gi|323304329|gb|EGA58102.1| Rnr2p [Saccharomyces cerevisiae FostersB] Length = 229 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 5/151 (3%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 ++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENERF 132 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I + Sbjct: 133 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 192 Query: 141 DEGEL---FNMYREVPSITAKANWALQYTQT 168 D E FN +P I KA WAL++ Q Sbjct: 193 DPKESEFLFNAIHTIPEIGEKAEWALRWIQD 223 >gi|144575330|gb|AAZ53597.2| ribonucleoside-diphosphate reductase beta chain [Mycoplasma hyopneumoniae 7448] Length = 314 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 52/324 (16%), Positives = 112/324 (34%), Gaps = 29/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W N W+P ++P+ +DL W++ L+ + ++ R Sbjct: 5 NWNIINDPKDLEVW---TRIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 58 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 +++ A +A +H + AF VH+ ++ I ++L E E N Sbjct: 59 TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 118 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +A + + E V + G Y GF Sbjct: 119 WVINNEKLQKRARILIPFYV---------------GEDPLKSKVAAALMPGFLLYGGFYL 163 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L +K+ ++ + I+RD+ +H + + + E ++ + +L++ Sbjct: 164 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 223 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE Y ++ + + A S ++ + A + +G + F E P + Sbjct: 224 LIELEKDYLYDLYSEVGL---AESAIKFSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 280 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348 + +FF + Y Sbjct: 281 LSARADENHDFFSGNGSSYVMALA 304 >gi|326536370|ref|YP_004300811.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133] gi|299483451|gb|ADJ19545.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133] Length = 382 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 120/333 (36%), Gaps = 19/333 (5%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + N+D + V + +K+ E + W P EV + D A + Sbjct: 7 QNEFNIDQPMFFGDDTGVARYEIVKHEKFEELTTKQLSFFWRPEEVNLTTDKAQFDKLWE 66 Query: 74 LTD-DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 + + NLG+ +S+ + + S+ +++ F E +HS ++ Sbjct: 67 TNRGHLQTIFTDNLGYQILMDSVQGRAPAIVLASICSDVALETWIMTWTFSETIHSRSYT 126 Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF-----------TTGTKDA 181 +II +L D ++F+ I A+A + L T G Sbjct: 127 HIIRNLYSDPSKIFDGVLANKEIMARATSICERYDLLHKLIILYQADKIRGVATPGQLRE 186 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGID 240 ++ L E + FY F + K M G + Q+I RDE+LH Sbjct: 187 VKKALYLCLHAINALEAIRFYVSFISTWNFFENMKIMEGNMKIMQFIARDENLHHQGTRY 246 Query: 241 VINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295 ++ Q+ +E ++++ M E E A+A G GL ++ Sbjct: 247 ILQQMNKGIDGTEWREIALDCKEEAEAMFLEVRAQERAWATYVYRNGHPDGLTTDLVHEF 306 Query: 296 MQFIANRRCHQIGLE-PLFKYTENPFPWMSEVI 327 + + +GL P+ + +P PW+++ + Sbjct: 307 IDYQLVPAMKNVGLNCPIERPKRHPLPWVNKYL 339 >gi|71893573|ref|YP_279019.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma hyopneumoniae J] gi|72080562|ref|YP_287620.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma hyopneumoniae 7448] Length = 339 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 52/324 (16%), Positives = 112/324 (34%), Gaps = 29/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W N W+P ++P+ +DL W++ L+ + ++ R Sbjct: 30 NWNIINDPKDLEVW---TRIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 83 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF VH+ ++ I ++L E E N Sbjct: 84 TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 143 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +A + + E V + G Y GF Sbjct: 144 WVINNEKLQKRARILIPFYV---------------GEDPLKSKVAAALMPGFLLYGGFYL 188 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L +K+ ++ + I+RD+ +H + + + E ++ + +L++ Sbjct: 189 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 248 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE Y ++ + + A S ++ + A + +G + F E P + Sbjct: 249 LIELEKDYLYDLYSEVGL---AESAIKFSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 305 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348 + +FF + Y Sbjct: 306 LSARADENHDFFSGNGSSYVMALA 329 >gi|319957101|ref|YP_004168364.1| ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM 16511] gi|319419505|gb|ADV46615.1| Ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM 16511] Length = 337 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 77/338 (22%), Positives = 141/338 (41%), Gaps = 23/338 (6%) Query: 21 DKRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 D+++ +Y W+ Y N W P+EV ++ + + LTD+E+ Sbjct: 16 DEKIYGGNPTGFVDFNRPRYKWSVNLYDLMNANTWFPSEVNTANEKKHF---DLLTDNEQ 72 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 + K + ++S + R +N + L Q +E HS ++ ++ + G Sbjct: 73 AIYKLTFAQLSFNDSAQ-EEYLSDFRRLANNRLVKAALSLQIMQEVNHSKSYAVLLDAAG 131 Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 + E+F++Y K + AL + F E + + V EG+ Sbjct: 132 -NSDEVFDLY--------KHDAALNRKNQRIANQFARYIDGNSAEEMLLSAMASVNLEGI 182 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKIENPHLWTKEFQ 258 +F GF+ I LG +K+ G + ++I RDE + HL ++ I EN Sbjct: 183 YFLLGFSYIYVLG--DKVPGARDMIKFIARDEINTHLPLFANIFKTIYKENK--IPASIV 238 Query: 259 QKSRTMLHEATLLEIAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 K+ M+ EA +E+ Y + +GL E+ + AN R ++IGLEP+F+ T Sbjct: 239 DKAYEMIQEAVDIELEYGKYLLENYPIMGLTDELMEKTVYNYANDRLNKIGLEPIFEETP 298 Query: 318 NPF--PWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352 + + + + + NFFE+ V Y + + D Sbjct: 299 QTYLQKLVEKHLKMNDVRSNFFESNVANYAKNSLDLDD 336 >gi|284504289|ref|YP_003407004.1| ribonucleotide reductase small chain [Marseillevirus] gi|282935727|gb|ADB04042.1| ribonucleotide reductase small chain [Marseillevirus] Length = 280 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 66/289 (22%), Positives = 122/289 (42%), Gaps = 25/289 (8%) Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS--NPECRQYLLRQAF 122 ++ W + LT E+ +K L FFA + +V N+V + +S E + + QA Sbjct: 1 MSDW---SKLTKGEKKFVKLELAFFAQFDGIVVENLVRNFQQEVSSYAKEIEWFYILQAA 57 Query: 123 EEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E +H+ T+ +I +L + + PSI ANW ++ Sbjct: 58 NELIHNETYMNLIDNLLPSPKKREKALDAISNYPSIRLIANWVERWMDRRI--------- 108 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 L + + + EG+ F FA I N++ G+ + ++I +DE+LH F Sbjct: 109 -----PLPERIIAFAALEGVIFTGSFAAIHYFTITNRLKGLRKANEWISKDEALHQRFAE 163 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 V I ++ + + Q++ + +L A + H+ + V ++A YM+ Sbjct: 164 AVYRYI-VDVIKAFPRVSQERVQEILGSAIDAVSPFIHDCLRFKNVNIDAERMIGYMKNA 222 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 A+ +G E F + +M +I + + NFFE V +Y +G E Sbjct: 223 ADGLAFSLGYEKFFNSDSS-LDYML-LIGMDNKTNFFEEVVADYAKGLE 269 >gi|144227519|gb|AAZ44308.2| ribonucleoside-diphosphate reductase beta chain [Mycoplasma hyopneumoniae J] Length = 353 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 52/324 (16%), Positives = 112/324 (34%), Gaps = 29/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W N W+P ++P+ +DL W++ L+ + ++ R Sbjct: 44 NWNIINDPKDLEVW---TRIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 97 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF VH+ ++ I ++L E E N Sbjct: 98 TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 157 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +A + + E V + G Y GF Sbjct: 158 WVINNEKLQKRARILIPFYV---------------GEDPLKSKVAAALMPGFLLYGGFYL 202 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L +K+ ++ + I+RD+ +H + + + E ++ + +L++ Sbjct: 203 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 262 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE Y ++ + + A S ++ + A + +G + F E P + Sbjct: 263 LIELEKDYLYDLYSEVGL---AESAIKFSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 319 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348 + +FF + Y Sbjct: 320 LSARADENHDFFSGNGSSYVMALA 343 >gi|323342959|ref|ZP_08083190.1| ribonucleotide-diphosphate reductase subunit beta [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463023|gb|EFY08218.1| ribonucleotide-diphosphate reductase subunit beta [Erysipelothrix rhusiopathiae ATCC 19414] Length = 358 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 58/336 (17%), Positives = 122/336 (36%), Gaps = 23/336 (6%) Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 N D + + Y + W P ++ +Q DL LW S L++D +L R Sbjct: 11 ANREYDGANWNEHEDNFTQTFYEQNLSQFWRPEDISLQPDLNLWAS---LSEDVKLAYGR 67 Query: 85 NLGFFASSESLVANNIVLAIYRHL--SNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLD 141 NL ++ + + + R + + + L A E VH+ ++ I + + Sbjct: 68 NLLVLTFLDTYQGDIGMPVVSRSIDHKYHQRKSVLNFMAAMENAVHAKSYSNIFMTYMKN 127 Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF--------LQDLFV 191 E +L+ + ++ + Y + L ++ D + V Sbjct: 128 EEIDDLYRWGEQNKNMQNILALIIGYYENLDRLTYRKQYADLGEPVDDFEFDVAQWKAMV 187 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 V E FY+GF L K++ E I+RDES+H + ++ ++ + Sbjct: 188 ASVFLESCLFYSGFYYPLYFYGQGKLMQAGEIINLILRDESIHGLYIGNLAMELYRKFDA 247 Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 + T L E+ + + ++++ AN+ +G + Sbjct: 248 ETQASLYEWLTTYLDAIYEEEVELIEAIYDPVELS---HDVKIFVRYNANKAMMNLGFDA 304 Query: 312 LFKYTE-NPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345 ++Y E NP + ++ + + + F + YQ+ Sbjct: 305 YYEYEEVNPV--VLNGLNTETKTMDNFSMKGNGYQK 338 >gi|46519447|gb|AAT00095.1| JM118 [Macaca fuscata rhadinovirus] Length = 314 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 64/324 (19%), Positives = 107/324 (33%), Gaps = 30/324 (9%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86 D L + N W P+++ + +D L+ +R + Sbjct: 12 ESPDRF-LYASDHPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLF 67 Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL----DE 142 F +ESLV NI + + SN + Y Q E +H + I+ D Sbjct: 68 TFLGMAESLVNFNI-EDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDL 126 Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 E ++ K +W ++ + + ++V EG++F Sbjct: 127 MTYAKKIVEDATLAKKIDWL--------------HSRVRKATTRAEKVLLFLVIEGIYFI 172 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262 + F I M G+ YI RDE LH + N + + Sbjct: 173 SSFYSIGLFRLRGVMRGVCLANDYISRDELLHTRAAGLLYNTMISRDES----PSVAYIH 228 Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 + EA +E + + +G +N EQ++Q A+R I + PLF P Sbjct: 229 GLFREAVEIETLFIR-SKSRGVTMVNVGDIEQFLQATADRILKSINVPPLFGARP-PNAC 286 Query: 323 MSEVIDLKKEKNFFETRVTEYQQG 346 K NFFE +EY Sbjct: 287 PLSYTSA-KSVNFFERDNSEYVTS 309 >gi|308233466|ref|ZP_07664203.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium vaginae DSM 15829] gi|328943412|ref|ZP_08240877.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium vaginae DSM 15829] gi|327491381|gb|EGF23155.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium vaginae DSM 15829] Length = 339 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 60/353 (16%), Positives = 117/353 (33%), Gaps = 29/353 (8%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M + + + P DK + N++ K W N W+P +P Sbjct: 1 MQSASNVQPTSQSPVDFAYADKGCNMRAVNWNRIQDEKDLEVWN---RVTQNFWLPENIP 57 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +DL W N L + +I R +++ A +A RH + Sbjct: 58 VSNDLPSW---NELDSSWQQLIIRTFTGLTLLDTVQATVGDVAQIRHALTDIEQANYANF 114 Query: 121 AFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 AF AVH+ ++ + ++L E E ++ +A + Y TG+ Sbjct: 115 AFMVAVHARSYGTVFSTLCSSEQIDEAQAWVVNNDALQKRAKALIPYY---------TGS 165 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238 + L G Y GF L +K+ ++ + I+RD+ +H + Sbjct: 166 DPLKSKVAAALMP------GFLLYGGFYLPFYLSARSKLPNTSDMIRLILRDKVIHNYYS 219 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298 Q + + + ++++ LE AY + A ++ + Sbjct: 220 GYKFQQKVRKLTSDEQQTVKDFVFDLMYQLIDLEKAYLQDLYKD---FDLADDAIRFSLY 276 Query: 299 IANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 A + +G + F E +P + + +FF + Y G Sbjct: 277 NAGKFLQNLGYDSPFSEQETYISPEVFAQLSARADENHDFFSGSGSSYVIGTS 329 >gi|255683173|ref|YP_003084381.1| UL40 [Duck enteritis virus] gi|158343199|gb|ABW35292.1| ribonucleotide reductase subunit 2 [Anatid herpesvirus 1] gi|208401182|gb|ACI26683.1| UL40 [Anatid herpesvirus 1] gi|254839988|gb|ACT83534.1| UL40 [Anatid herpesvirus 1] Length = 355 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 67/314 (21%), Positives = 123/314 (39%), Gaps = 23/314 (7%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 E + N W+ +E+ DD A + LT E + F ++++ LV N Sbjct: 62 QEMNELRSLSIVNRWLESELVFLDDAAD---VDKLTPSELDFYRFIFTFLSAADDLVNCN 118 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 + + + + Y + Q EAVHS + I L ++ TA+A Sbjct: 119 L-GNLMGLFEEKDIQHYYVEQESIEAVHSRVYSIIQLILFKNDA------------TARA 165 Query: 160 NWALQYTQ--TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217 + + + ++ S + + E + + ++ ++ EG++F FA I + N Sbjct: 166 EYVKKAIRETSIRSKVKWISERVEECEDIPEKYILMILIEGLFFAASFAAIAYMRTRNIF 225 Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277 V + I RDE++H + N ++ + K + + EA LE + Sbjct: 226 VVTCQANTMISRDETIHTKASCVIYN----KHLQKYKKPSTCRIYKLFSEAVKLECEFLR 281 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFE 337 P ++ + Y++F A+R IGL PLF + + ++ NFFE Sbjct: 282 ARAPSDSAIIDTEAICSYVRFNADRLLSDIGLAPLFDEPPPKHDFPLAFMATSQQTNFFE 341 Query: 338 TRVTEYQQGAELKW 351 R T Y G+ L Sbjct: 342 RRNTTYA-GSVLND 354 >gi|54020059|ref|YP_115670.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma hyopneumoniae 232] gi|53987232|gb|AAV27433.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma hyopneumoniae 232] Length = 353 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 52/324 (16%), Positives = 112/324 (34%), Gaps = 29/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W N W+P ++P+ +DL W++ L+ + ++ R Sbjct: 44 NWNIINDPKDLEVW---TRIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 97 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A +A +H + AF VH+ ++ I ++L E E N Sbjct: 98 TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 157 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +A + + E V + G Y GF Sbjct: 158 WVINNEKLQKRARILIPFYV---------------GEDPLKSKVAAALMPGFLLYGGFYL 202 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L +K+ ++ + I+RD+ +H + + + E ++ + +L++ Sbjct: 203 PFYLSARSKLPNTSDVIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 262 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE Y ++ + + A S ++ + A + +G + F E P + Sbjct: 263 LIELEKDYLYDLYSEVGL---AESAIKFSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 319 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348 + +FF + Y Sbjct: 320 LSARADENHDFFSGNGSSYVMALA 343 >gi|197294249|ref|YP_001798790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Phytoplasma australiense] gi|171853576|emb|CAM11447.1| Ribonucleotide reductase, beta subunit [Candidatus Phytoplasma australiense] Length = 344 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 61/329 (18%), Positives = 125/329 (37%), Gaps = 21/329 (6%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 ++ NQL +Y Y + W P ++ +Q DLA W N L+D+E+ RNL Sbjct: 12 ANWNQLED-EYTHF--FYEQNLSQFWRPEDISLQGDLAAW---NHLSDEEKTTYTRNLLV 65 Query: 89 FASSESLVANNIVLAIYRHL--SNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG-- 143 ++ + + I + + + + L E VH+ ++ I TS +E Sbjct: 66 LTFLDTYQGDLGIPVIANSMDENKHQKKATLNFMGAMENAVHAKSYSNIFTSYLSNEDIN 125 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSF------TTGTKDADQEFLQDLFVFYVVFE 197 +LF + ++ + + L + + ++ Q+ V E Sbjct: 126 QLFVWGEKQVNLQNIMKIIFRVYEDLEYNIYLKKYQLSEFSELQYQKNQWKAMAISVFLE 185 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 FY+GF L K++ E I+RDES+H + + ++ KE Sbjct: 186 TWLFYSGFYYPLYFYGQGKLMQAGEIINLIIRDESIHGVYIGRLATELYHLFDDDTKKEL 245 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + ++ E K + ++++++ AN+ +G + F E Sbjct: 246 KTWLDATMKTLYKEQMELVKEVYSK--LSYLEEDVQKFVRYNANKALMNLGFDAFFPE-E 302 Query: 318 NPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345 N P + ++ + + + F + YQ+ Sbjct: 303 NVNPVVLNGLNTETKTMDNFSMKGNGYQK 331 >gi|227876139|ref|ZP_03994257.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC 35243] gi|227843295|gb|EEJ53486.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC 35243] Length = 333 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 115/333 (34%), Gaps = 35/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W +N W+P +VP+ +DL W N L+D ER + R Sbjct: 25 NWNNITDEKDREIWN---RLTSNFWLPEKVPLSNDLPSW---NQLSDMERNVTMRVFTGL 78 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A ++ + + AF +AVH+ ++ I ++L + Sbjct: 79 TMLDTVQATVGEISQIQDGITEHEQAIYANIAFMQAVHARSYSSIFSTLSNTPEIDAAYT 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +A LQ+ E V + + Y GF Sbjct: 139 WAVNNDLLQERAKMVLQHY---------------YGEDSLKRKVASTLLSSLLLYAGFYL 183 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L ++ A+ + I+RD+++H + + +P E + + +L + Sbjct: 184 PLYFSARGILMNTADMIRLILRDKAVHGYYSGYKYQRGLDLHPE-RAAEMEDFTFQLLDD 242 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMS 324 LE+ Y+ E + ++++ AN+ +G F E + Sbjct: 243 LYELELKYSGEIYEPTGL---MDDVAVFVRYNANKAMMNLGYPTRFAPEETEVKADILAA 299 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 ++ +FF + Y G+ WD Sbjct: 300 LAPGSEETHDFFSGSGSSYVIGSAESTSDEDWD 332 >gi|59912|emb|CAA24930.1| unnamed protein product [Human herpesvirus 2] Length = 337 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 117/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 31 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELGFYRFLFAFL 87 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 88 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAY 146 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I K +W + + + + + F+ ++ EG++F F Sbjct: 147 VARTINHPAIRVKVDWLE--------------ARVRECDSVPEKFILMILIEGVFFAASF 192 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N ++ K + + Sbjct: 193 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGDH----AKPEAARVYRLF 248 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 EA +EI + P L+ + E Y++F A+R I ++PL+ + Sbjct: 249 REAVDIEIGFIRSQAPTDSSILSPGALAAIENYVRFSADRLLGLIHMQPLYSAPAPDASF 308 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 309 PLSLMSTDKHTNFFECRSTSYA 330 >gi|330861133|emb|CBX71396.1| ribonucleoside-diphosphate reductase 2 subunit beta [Yersinia enterocolitica W22703] Length = 239 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 50/254 (19%), Positives = 97/254 (38%), Gaps = 28/254 (11%) Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYT 166 S P +F EAVH+ ++ I ++L + D E + E + KA+ LQ+ Sbjct: 3 SPPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSEENGPLQKKADIILQHY 62 Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 + + L+ V E FY+GF + ++ A+ + Sbjct: 63 N--------------NDDPLKKKI-ASVFLESFLFYSGFYLPMYWSSRARLTNTADLIRL 107 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 I+RDE++H + + + + +E + + +L + EI Y VG Sbjct: 108 IIRDEAVHGYYIGYKFQKGLEKLDNNRRQEIKNFAFDLLQDLYDNEIHYTESLYDG--VG 165 Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEY 343 ++++ + AN+ +G E LF ++ NP + + + +FF + Y Sbjct: 166 WT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSPNADENHDFFSGSGSSY 224 Query: 344 QQGAEL-----KWD 352 G + WD Sbjct: 225 VIGKAVNTEDEDWD 238 >gi|306819415|ref|ZP_07453122.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35239] gi|307701705|ref|ZP_07638721.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris FB024-16] gi|304647707|gb|EFM45025.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus mulieris ATCC 35239] gi|307613208|gb|EFN92461.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris FB024-16] Length = 333 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 115/333 (34%), Gaps = 35/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W +N W+P +VP+ +DL W N L+D ER + R Sbjct: 25 NWNNITDEKDREIWN---RLTSNFWLPEKVPLSNDLPSW---NQLSDMERSVTMRVFTGL 78 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A ++ + + AF +AVH+ ++ I ++L + Sbjct: 79 TMLDTVQATVGEISQIQDGITEHEQAIYANIAFMQAVHARSYSSIFSTLSNTPEIDAAYT 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +A LQ+ E V + + Y GF Sbjct: 139 WAVNNDLLQERAKMVLQHY---------------YGEDSLKRKVASTLLSSLLLYAGFYL 183 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L ++ A+ + I+RD+++H + + +P E + + +L + Sbjct: 184 PLYFSARGILMNTADMIRLILRDKAVHGYYSGYKYQRGLDLHPE-RAAEMEDFTFQLLDD 242 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMS 324 LE+ Y+ E + ++++ AN+ +G F E + Sbjct: 243 LYELELKYSGEIYEPTGL---MDDVAVFVRYNANKAMMNLGYPTRFAPEETEVKADILAA 299 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 ++ +FF + Y G+ WD Sbjct: 300 LAPGSEETHDFFSGSGSSYVIGSAESTSDEDWD 332 >gi|269976951|ref|ZP_06183925.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] gi|269934782|gb|EEZ91342.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus mulieris 28-1] Length = 333 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 115/333 (34%), Gaps = 35/333 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W +N W+P +VP+ +DL W N L+D ER + R Sbjct: 25 NWNNITDEKDREIWN---RLTSNFWLPEKVPLSNDLPSW---NQLSDMERSVTMRVFTGL 78 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A ++ + + AF +AVH+ ++ I ++L + Sbjct: 79 TMLDTVQATVGEISQIQDGITEHEQAIYANIAFMQAVHARSYSSIFSTLSNTPEIDAAYT 138 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + +A LQ+ E V + + Y GF Sbjct: 139 WAVNNDLLQERAKMVLQHY---------------YGEDSLKRKVASTLLSSLLLYAGFYL 183 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L ++ A+ + I+RD+++H + + +P E + + +L + Sbjct: 184 PLYFSARGILMNTADMIRLILRDKAVHGYYSGYKYQRGLDLHPERV-AEMEDFTFQLLDD 242 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMS 324 LE+ Y+ E + ++++ AN+ +G F E + Sbjct: 243 LYELELKYSGEIYEPTGL---MDDVAVFVRYNANKAMMNLGYPTRFAPEETEVKADILAA 299 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 ++ +FF + Y G+ WD Sbjct: 300 LAPGSEETHDFFSGSGSSYVIGSAESTSDEDWD 332 >gi|68069763|ref|XP_676793.1| ribonucleotide reductase small subunit [Plasmodium berghei strain ANKA] gi|56496646|emb|CAI04349.1| ribonucleotide reductase small subunit, putative [Plasmodium berghei] Length = 158 Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 9/153 (5%) Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG+ F F I + NK+ G+ + I RDE LH +F + + ++ + P Sbjct: 1 EGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE----- 55 Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G +F ++ Sbjct: 56 --EVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HS 112 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +NPF WM +I L+ + NFFE RV +YQ+ + Sbjct: 113 KNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 144 >gi|18653874|ref|NP_570808.1| small ribonucleotide reductase [Macacine herpesvirus 5] gi|4494972|gb|AAD21394.1| small ribonucleotide reductase [Macaca mulatta rhadinovirus 17577] Length = 314 Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 104/312 (33%), Gaps = 29/312 (9%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 + N W P+++ + +D L+ +R + F +ESLV Sbjct: 23 HPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLFTFLGMAESLVNF 79 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL----DEGELFNMYREVPS 154 NI + + SN + Y Q E +H + I+ D E + Sbjct: 80 NI-EDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDLMIYAKKIVEDAT 138 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K +W ++ + + ++V EG++F + F I Sbjct: 139 LAKKIDWL--------------HSRVRKATTRAEKVLLFLVIEGIYFISSFYSIGLFRLR 184 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 M G+ YI RDE LH + N + + + EA +E Sbjct: 185 GIMRGVCLANDYISRDELLHTRAASLLYNTMISRDES----PSVAYIHGLFREAVEIETL 240 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 + + + +N EQ++Q A+R I + PLF P K N Sbjct: 241 FIR-SKSRDVTMVNVGDIEQFLQATADRILKSINIPPLFGARP-PNACPLSYTSA-KSVN 297 Query: 335 FFETRVTEYQQG 346 FFE +EY Sbjct: 298 FFERDNSEYVTS 309 >gi|307107666|gb|EFN55908.1| hypothetical protein CHLNCDRAFT_57791 [Chlorella variabilis] Length = 849 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 61/331 (18%), Positives = 115/331 (34%), Gaps = 69/331 (20%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP-----------------------T 57 K +L+ D + PLK W +Y A + P Sbjct: 556 PKPLLDENPDRYCMFPLKEDRVWSQYKKAEAS--RPSGQAPNDPLCMAHTTFWTTFWTAE 613 Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 +V D W+ + L ER + L + A+S+ L+ +N+V + E R + Sbjct: 614 DVDFSSDARDWQDR--LAPGERSFLSSVLAYLAASDRLIQHNVVARFMIDVELAEARAFY 671 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV----PSITAKANWALQYTQTLSSPS 173 Q F++ VH+ I+ +L + E P+ AKA W ++ ++ + Sbjct: 672 AFQLFKKNVHTEMVSAILAALFAGKEEQLAAVLRTVLALPAFQAKAAWVRKWINRQATAA 731 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 + L I RDE + Sbjct: 732 AALPPLLLPRGLLPG-------------------------------TGHATDLISRDEGV 760 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293 H+ + + ++ + +++ ++ EA E A+ +P GL A + E Sbjct: 761 HVESAGVMYSLLRSKLTD-------SQAQGIVGEAVEAERAFVCGQLPLEATGLEAGAME 813 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324 +Y+Q++ +R +G PL++ NP PW+ Sbjct: 814 EYLQYVGDRLLGALGHAPLYRVAANPLPWLE 844 >gi|194246584|ref|YP_002004223.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Phytoplasma mali] gi|193806941|emb|CAP18373.1| Ribonucleoside-diphosphate reductase, beta chain [Candidatus Phytoplasma mali] Length = 348 Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats. Identities = 58/326 (17%), Positives = 116/326 (35%), Gaps = 21/326 (6%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + + Y + W P ++ +Q DL WK L+ E+ + +NL Sbjct: 12 NWNQFEDPYTHFFYEQNLSQFWRPEDISLQGDLQTWKD---LSKFEKNVYSKNLLILTFL 68 Query: 93 ESLVANNIVLAIYRHLSNPE--CRQYLLRQAFEEA-VHSHTFQYIITSL--GLDEGELFN 147 ++ ++ + I E + L E VH+ ++ I +L + +LF Sbjct: 69 DTYQGDSGMFIISSSFKKEEHQKKATLNFMGAMENAVHAKSYSNIFMTLLNSKEIDDLFV 128 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD------QEFLQDLFVFYVVFEGMWF 201 + + + L F D + +++ V V E F Sbjct: 129 WGGNQKYLQNIIGKIIDVYEDLEKKIFQRKYNDENITDLIFKKYQWKAMVTSVFLETWLF 188 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 Y+GF L K++ E I+RDES+H + + I L E + Sbjct: 189 YSGFYYPLFFYSQGKLMQSGEIINLIIRDESVHGVYIARLALNIYNSFDKLIKDELSKWM 248 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L +IA + ++ +++++ AN+ +G P F+ E NP Sbjct: 249 YDLLKYFYQEQIALVKSVYNEHYLI---NDVNKFVRYNANKALMNLGFNPYFEKEEVNPV 305 Query: 321 PWMSEVIDLKKEK-NFFETRVTEYQQ 345 + ++ + + + F + YQ+ Sbjct: 306 --ILNGLNTETKTMDNFSMKGNGYQK 329 >gi|9629310|ref|NP_044510.1| ribonucleotide reductase subunit 2 [Human herpesvirus 2] gi|61231410|sp|P69520|RIR2_HHV23 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|61231418|sp|P69521|RIR2_HHV2H RecName: Full=Ribonucleoside-diphosphate reductase small chain; Short=R2; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|330200|gb|AAA45807.1| 38K protein [Human herpesvirus 2] gi|1869863|emb|CAB06726.1| ribonucleotide reductase small subunit [Human herpesvirus 2] gi|224613173|dbj|BAH24264.1| ribonucleotide reductase small subunit [Human herpesvirus 2] gi|224613175|dbj|BAH24265.1| ribonucleotide reductase small subunit [Human herpesvirus 2] Length = 337 Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 116/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 31 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELGFYRFLFAFL 87 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 88 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAY 146 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I K +W + + + + + F+ ++ EG++F F Sbjct: 147 VARTINHPAIRVKVDWLE--------------ARVRECDSIPEKFILMILIEGVFFAASF 192 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 193 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPEAARVYRLF 248 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 EA +EI + P L+ + E Y++F A+R I ++PL+ + Sbjct: 249 REAVDIEIGFIRSQAPTDSSILSPGALAAIENYVRFSADRLLGLIHMQPLYSAPAPDASF 308 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 309 PLSLMSTDKHTNFFECRSTSYA 330 >gi|12642668|gb|AAK00340.1| ribonucleotide reductase small subunit [Bovine herpesvirus 2] Length = 313 Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 71/322 (22%), Positives = 121/322 (37%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ +E+ D + L+ E + F Sbjct: 7 PERYFYTSECPDINRLRSLSILNRWLESELVFAGDEED---VDRLSPGELDFYRFLFTFL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV + + + Y + Q E VHS + I L ++ +Y Sbjct: 64 SAADDLVTEEL-GRLSGLFYQKDILHYYVEQECIEVVHSRVYSIIQMVLFKNDDAARRIY 122 Query: 150 RE----VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + D + + F+ ++ EG++F F Sbjct: 123 VARTVGHPAIHAKVDWLE--------------ARVRDCPSVPEKFILMILIEGIFFAASF 168 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L +N + + I RDE++H + N +P K + R + Sbjct: 169 AAIAFLRTSNLLKVTCQSNDLISRDEAVHTTASCCIYNNYIGAHP----KPPPTRVRQLF 224 Query: 266 HEATLLEIAYAHETMPKGFVGLN---APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 EA +EIA+ MP+ L+ S E Y++F A+R IG +PLF + Sbjct: 225 LEAVDIEIAFIRAKMPRDGQVLSESAVASIENYVRFSADRLLCLIGDQPLFNAPPPDANF 284 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 285 PLRLMSTDKHTNFFECRSTAYA 306 >gi|297745764|emb|CBI15820.3| unnamed protein product [Vitis vinifera] Length = 269 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 9/169 (5%) Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 + + + EG++F F I L + M G+ + I R E LH +F + Sbjct: 94 SSTLFAERLIAFACVEGIFFSGSFCAIFWLKKKGLMPGLTFSNELISRYEGLHCDFACLL 153 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 + ++ + P QK ++HEA +E + E +P +G+ A Y++F+ + Sbjct: 154 YSLLQKQLPW-------QKVHHIVHEAMEIETQFICEALPCALIGMKATLMSHYIKFVVD 206 Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 R +G E + ENPF WM E I L+ NFF+ R+ +YQ+ + + Sbjct: 207 RLLVALGYERKYNV-ENPFDWM-EFIFLQGNANFFQRRMGDYQKASIMS 253 >gi|7330057|gb|AAF60046.1|AF210726_67 small ribonuclease reductase [Rhesus monkey rhadinovirus H26-95] Length = 304 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 104/312 (33%), Gaps = 29/312 (9%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 + N W P+++ + +D L+ +R + F +ESLV Sbjct: 13 HPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLFTFLGMAESLVNF 69 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL----DEGELFNMYREVPS 154 NI + + SN + Y Q E +H + I+ D E + Sbjct: 70 NI-EDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDLMIYAKKIVEDAT 128 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K +W ++ + + ++V EG++F + F I Sbjct: 129 LAKKIDWL--------------HSRVRKATTRAEKVLLFLVIEGIYFISSFYSIGLFRLR 174 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 M G+ YI RDE LH + N + + + EA +E Sbjct: 175 GIMRGVCLANDYISRDELLHTRAASLLYNTMISRDES----PSVAYIHGLFREAVEIETL 230 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 + + + +N EQ++Q A+R I + PLF P K N Sbjct: 231 FIR-SKSRDVTMVNVGDIEQFLQATADRILKSINIPPLFGARP-PNACPLSYTSA-KSVN 287 Query: 335 FFETRVTEYQQG 346 FFE +EY Sbjct: 288 FFERDNSEYVTS 299 >gi|311993498|ref|YP_004010363.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj9] gi|295917455|gb|ADG60126.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj9] Length = 379 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 61/332 (18%), Positives = 123/332 (37%), Gaps = 21/332 (6%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 + + N+D + V + +K+ E + W P EV + D + + + Sbjct: 7 QAKFNIDQPMFFGPDTGVARYEIVKHQKFEELTTKQLSFFWRPEEVNLTTDKSQF---DK 63 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L ++ NLG+ +S+ + + S+ +++ F E +HS ++ + Sbjct: 64 LWAPYQIQFTDNLGYQILMDSVQGRAPAIVLASICSDVALETWIMTWTFSETIHSRSYTH 123 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTL--------SSPSFTTGTKDADQE- 184 II +L D ++F+ I A+A + L + T + +E Sbjct: 124 IIRNLFSDPSKIFDGVLANKEIMARATSICERYDLLHKLIILYQADKIRGVATPEQLREV 183 Query: 185 --FLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDV 241 L E + FY F + K M G + Q+I RDE+LH + Sbjct: 184 KKALYMCLHAINALEAIRFYVSFISTWNFFENMKIMEGNMKIMQFIARDENLHHQGTRYI 243 Query: 242 INQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYM 296 + Q+ + E + ++ + E E A+A G GL ++ Sbjct: 244 LQQMNKGIDGTEWREIALECKAEAEELFIEVRNQERAWASYVYRDGCPPGLTVELVHDFI 303 Query: 297 QFIANRRCHQIGLE-PLFKYTENPFPWMSEVI 327 + + +GL P+ + +P PW+++ + Sbjct: 304 DYQLVPAMNNVGLTCPVQRPKRHPLPWVNKYL 335 >gi|290766061|gb|ADD60039.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1] Length = 340 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 34 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 90 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 91 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 149 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 150 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 195 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 196 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 251 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 252 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 311 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 312 PLSLMSTDKHTNFFECRSTSYA 333 >gi|222478371|gb|ACM62263.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1] Length = 340 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 34 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 90 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 91 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 149 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 150 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 195 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 196 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 251 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 252 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 311 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 312 PLSLMSTDKHTNFFECRSTSYA 333 >gi|114318828|gb|ABI63502.1| UL40 [Human herpesvirus 1] gi|290766139|gb|ADD60116.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1] Length = 340 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 34 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 90 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 91 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 149 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 150 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 195 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 196 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 251 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 252 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 311 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 312 PLSLMSTDKHTNFFECRSTSYA 333 >gi|9629421|ref|NP_044642.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1] gi|132622|sp|P10224|RIR2_HHV11 RecName: Full=Ribonucleoside-diphosphate reductase small chain; Short=R2; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit; Flags: Precursor gi|59540|emb|CAA32303.1| ribonucleotide reductase small subunit [Human herpesvirus 1] Length = 340 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 34 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 90 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 91 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 149 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 150 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 195 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 196 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 251 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 252 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 311 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 312 PLSLMSTDKHTNFFECRSTSYA 333 >gi|71894414|ref|YP_278522.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma synoviae 53] gi|71851202|gb|AAZ43811.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma synoviae 53] Length = 339 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 54/324 (16%), Positives = 110/324 (33%), Gaps = 29/324 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W N W+P ++P+ +DL W N + + ++ R Sbjct: 30 NWNFVNDPKDLEVWN---RVTQNFWLPEKIPVSNDLKSW---NEMDKSWQELLVRTFTGL 83 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ A +A + + AF VH+ ++ I ++L D + Sbjct: 84 TLLDTIQATLGDIAQIPNSLTDHEQVIYANFAFMVGVHARSYGTIFSTLSNSDDIEKAHE 143 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + A+A + + Y ++ L+ + G Y GF Sbjct: 144 WVINNEKLQARAKFLVPYY--------------TSKDPLKSKI-AAALMPGFLLYGGFYL 188 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L K+ ++ + I+RD+ LH + Q + P E+++ + +++E Sbjct: 189 PFYLSARGKLPNTSDIIRLILRDKVLHNYYSGYKYRQKVEKLPKEKQAEYKEFTFKIMYE 248 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE + E + A + + A + G E F E +P + Sbjct: 249 LIELEKDFLRELYDGFGL---ADEAIAFSLYNAGKFLQNCGYESPFTPEETKISPEVFAQ 305 Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348 + +FF + Y G Sbjct: 306 LSARADENHDFFSGNGSSYVMGVS 329 >gi|156843271|ref|XP_001644704.1| hypothetical protein Kpol_1056p47 [Vanderwaltozyma polyspora DSM 70294] gi|156115352|gb|EDO16846.1| hypothetical protein Kpol_1056p47 [Vanderwaltozyma polyspora DSM 70294] Length = 361 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 54/309 (17%), Positives = 122/309 (39%), Gaps = 22/309 (7%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 E + + +L L+P+K+ ++ Y W E+ D+ W K Sbjct: 32 EVEESQSKEPILMENKSRFVLMPIKFHTVYDGYKKREALFWPAEEIDFSHDIINWGKKA- 90 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 +D ++ +IK++L F SS L + + I + PE + + + E +H + Sbjct: 91 -SDHDKSIIKKSLAFLCSS-VLGSFYLPEHISSEVQIPEAKCFYGFEIMVENIHGEVYSL 148 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 I L + E+ M+++V + A + + SF D + + V + Sbjct: 149 AIDQLVHNTDEIKKMFKDVDN----AKFIER------KKSFAERWFDKESSLFAEKLVAF 198 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 E ++ F I+SL + + + G+ + I++D +H +F + + +++K Sbjct: 199 SSIEAIFSLVSFFSIMSLEKKDIIPGLISGIKLILKDHIVHCDFQMSIYSELKK------ 252 Query: 254 TKEFQQKSRTMLHEATLLEIA-YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 + ++ EA +E+ + K + ++++ +R G + Sbjct: 253 -RLDPGIIERIVTEAVEIELETLEDDYFNKQLDKETKADIKNVIEYVGDRVLMGFGNQKH 311 Query: 313 FKYTENPFP 321 F ++ NP+ Sbjct: 312 F-HSANPYD 319 >gi|281207436|gb|EFA81619.1| hypothetical protein PPL_05610 [Polysphondylium pallidum PN500] Length = 1292 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 26/227 (11%) Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + +D+ W+ L D+ER +I LGFF S ++ NI+ + PE R + Q Sbjct: 60 LLNDVRDWQC--KLDDNERYLISNILGFFVSIAGIINENIITHFMSEVQIPEARTFYSMQ 117 Query: 121 AFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 E + S + +I + D E FN +P + K W L+ Sbjct: 118 IAMENIQSEKYSLLIDAYIKDTDEKSKIFNAIESIPCVKRKCEWLLKSMN---------- 167 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 + + L + + + E + + F IL + + M ++E Y +I+ +E H F Sbjct: 168 ----NSKSLAERLIAFAAVESILYSASFCVILWFHKRSLMPKLSEYYSFIVSNEYTHCEF 223 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 G + ++ L K + +++ +A E Sbjct: 224 GRLLYSK-------LINKLDTEMIESIIRDAVDCEKQIMESETGDSI 263 >gi|10140982|ref|NP_065559.1| ribonucleotide-reductase, small subunit [Alcelaphine herpesvirus 1] gi|81984051|sp|O36410|RIR2_ALHV1 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|2338023|gb|AAC58107.1| ribonucleotide-reductase, small subunit [Alcelaphine herpesvirus 1] Length = 305 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 59/306 (19%), Positives = 111/306 (36%), Gaps = 20/306 (6%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 + +E N W P ++ + D+ K + +++ + K F +E+LV Sbjct: 13 HPGFFELTQETFQNRWFPAQINLSVDV---KCLSLMSEADVNFYKYLFTFLGMAETLVNF 69 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 NI + + + Y Q E VH + I+ L + + + Sbjct: 70 NI-DELLVDFECHDIKHYYCEQMAMECVHGKVYFNILNMLFKN---------NLAATWEF 119 Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 A L+ + + + + +FY + EG++F + F I L M Sbjct: 120 AEAVLKDEALQKKLEWLESKIKMAKTKAEKVLIFY-LIEGVFFISSFYCIGLLRVKGVMP 178 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 G+ YI RDE LH + N + + + + ++ EA +E A+ E Sbjct: 179 GVCMANDYISRDELLHTRAAALLYNTMIPKE----ERPSSEWVVSLFKEAVEIECAFI-E 233 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFET 338 K ++ +++ A+R + I L +K ++ P K +FFE Sbjct: 234 AKTKQVTFVSMDDIRAFLEATADRLLNSIELPRYYK-SDPPQSCPLTYTGCIKNVSFFER 292 Query: 339 RVTEYQ 344 TEY Sbjct: 293 ESTEYS 298 >gi|26553540|ref|NP_757474.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma penetrans HF-2] gi|26453546|dbj|BAC43878.1| ribonucleotide diphosphate reductase subunit beta [Mycoplasma penetrans HF-2] Length = 339 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 52/328 (15%), Positives = 110/328 (33%), Gaps = 29/328 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + K W N W+P ++ + +DL W N L + + ++ R Sbjct: 30 NWNFINDDKDLEVWN---RITQNFWLPEKIAISNDLPSW---NKLDSNWQELVVRTFTGL 83 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +S+ A +A ++ + AF VH+ ++ I ++ + + Sbjct: 84 TLLDSIQATIGDVAQVKNSLTDHEQVIYTNFAFMVGVHARSYGSIFSTFCSSDQINSAHD 143 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 S+ +A + Y G + + G Y GF Sbjct: 144 WVVNCESLQKRAQVLIPYY---------IGDDPLKSKVAAAMMP------GFLLYGGFYL 188 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 LG N + + + I+RD+ +H + + + P E ++ +L++ Sbjct: 189 PFYLGAKNLLPNTLDIIRLILRDKVIHNYYSGYKYQKKVAKLPPEKQAEMKKFVFDLLYQ 248 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324 LE + +E + A ++ + A + +G + F E P ++ Sbjct: 249 VIDLEKEFLNELYAGFNIADQA---IKFSVYNAGKFLQNLGYDSPFTPEETEIKPEIFVQ 305 Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352 + +FF + Y G + D Sbjct: 306 LSARADENHDFFSGSGSSYIMGNVEETD 333 >gi|332672470|ref|YP_004421714.1| Ribonucleotide reductase, small subunit [Campylobacter phage NCTC12673] gi|327493647|gb|AEA86506.1| Ribonucleotide reductase, small subunit [Campylobacter phage NCTC12673] Length = 378 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 58/294 (19%), Positives = 118/294 (40%), Gaps = 20/294 (6%) Query: 38 KYGWAWEKYL-----SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 +Y W L W P E+ M + KS L + + IK NL F Sbjct: 27 RYDWYSHNQLESLDRKQQAQLWFPEEISM---IHEPKSFIELPEHNQRQIKANLTFQTLM 83 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 +S + + +++ L QA+ E +HS ++ +II S+ + ++F+ Y E Sbjct: 84 DSGQNRGLDNILIPLVTSSGLEGCLKTQAYFEYIHSRSYSHIIKSVFPNPTDVFDEYCEY 143 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL--- 209 P I + N + ++L D ++ + + + EG+ FY F Sbjct: 144 PEIKTRINDEIDTYESLEGSLEEN---DENKLKILEACLRIQFLEGVKFYVSFLTTYMIN 200 Query: 210 -SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP----HLWTKEFQQKSRTM 264 NK+ + + + I DE +HL ++ ++ E HL+ +K+R + Sbjct: 201 KYSAGGNKIPNLTKIIKLINNDEDIHLVIFSFILKTLRSEQHQGFSHLFDDSLSRKARKI 260 Query: 265 LHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + E+ +A + G + L + + +++F + R + G +P++ + Sbjct: 261 AKKVYQDELEWAKYLLSMGPIPGLTIENIDGFLKFFVDDRLKKCGFQPIWNAPK 314 >gi|257069911|ref|YP_003156166.1| ribonucleotide-diphosphate reductase subunit beta [Brachybacterium faecium DSM 4810] gi|256560729|gb|ACU86576.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Brachybacterium faecium DSM 4810] Length = 341 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 112/334 (33%), Gaps = 36/334 (10%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P +VP+ +DL W+ L + +R + R Sbjct: 32 NWNRVQDEKDLEVWN---RLTANFWLPEKVPLSNDLQAWQ---RLPEQDRTLTMRVFTGL 85 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 +++ A + + AF ++VH+ ++ + ++L + Sbjct: 86 TMLDTVQATVGEICQIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLTSTPEIDSAYR 145 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + + LQ+ + L Y GF Sbjct: 146 WAVNNDLLQERCKKVLQHYYGADPLKRKVSSTLLSSLLL---------------YAGFYL 190 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L + A+ + I+RD+++H + + +E ++ + +L E Sbjct: 191 PLHFSVRATLTNTADMIRLILRDKAVHGYYSGYKYQRGLAAATADKQEEMREFTVALLEE 250 Query: 268 ATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWM 323 LE+ Y+ E P G ++++ AN+ +G F+ E +P Sbjct: 251 LYALELEYSGELYEPLGL----MDDVAGFVRYNANKALMNLGYPARFEAHETVVSPEILA 306 Query: 324 SEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352 + + +FF + Y G ++ WD Sbjct: 307 ALAPGSDENHDFFSGSGSSYVIGKAEHTSDDDWD 340 >gi|227504052|ref|ZP_03934101.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] gi|227199382|gb|EEI79430.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC 6940] Length = 304 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 51/310 (16%), Positives = 113/310 (36%), Gaps = 26/310 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E + N W+P +VP+ +DL+ W+ +T ER + R + +++ A + Sbjct: 8 EVWNRLTANFWLPEKVPLSNDLSAWQ---KMTPSERNLTMRVFTGLTTLDTVQATVGEIC 64 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANW 161 + + AF ++VH+ ++ + ++L + E + + A+A Sbjct: 65 QIQDARTEHEQAVYTNIAFMQSVHARSYSSVFSTLSSTKEIDEAYRWAVNNDLLQARAKK 124 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 L + D + + + ++ Y GF L + A Sbjct: 125 VLTHYY----------GPDPLKRKVSSTLLSSLLL-----YAGFYLPLHFSVHATLTNTA 169 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 + + I+RD+++H + + + +E + + ++L E LE+ Y+ E Sbjct: 170 DMIRLILRDKAVHGYYSGYKYQRGLESSSPQRQQEMKNFTISLLEELYSLELEYSGELYE 229 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFET 338 + ++++ AN+ +G F E NP + + +FF Sbjct: 230 PLGL---MDDVAVFVRYNANKALMNLGYPDYFPPEETEVNPEILAALAPGADENHDFFSG 286 Query: 339 RVTEYQQGAE 348 + Y G Sbjct: 287 SGSSYVIGTA 296 >gi|162448128|ref|YP_001621260.1| ribonucleoside-diphosphate reductase subunit beta [Acholeplasma laidlawii PG-8A] gi|161986235|gb|ABX81884.1| ribonucleoside-diphosphate reductase, beta chain [Acholeplasma laidlawii PG-8A] Length = 369 Score = 155 bits (393), Expect = 6e-36, Method: Composition-based stats. Identities = 59/355 (16%), Positives = 138/355 (38%), Gaps = 27/355 (7%) Query: 7 LSPIQAGEKRVNVDD-KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 + + ++ +D KR+ ++ N+ + + Y + W P +V +Q DL Sbjct: 1 MDKKATKQSKIKLDPIKRVKYEGANWNEP---EDDYTQHFYEQNLSQFWRPEDVSLQPDL 57 Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP--ECRQYLLRQAFE 123 +W + L ++ + +NL ++ + + + R L + + + L Sbjct: 58 NVW---SVLPENIQDAYAKNLLVLTFLDTHQGDIGMPVVSRSLDDHFHQRKAVLNFMGAM 114 Query: 124 EA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 E VH+ ++ I + ++ ELF+ + ++ + + Y + L ++ + Sbjct: 115 ENAVHAKSYSNIFMTYMSNQKIDELFHWGEKHTNLQNIMSLIVGYYKELDRYNYLKQFES 174 Query: 181 ADQEFLQ--------DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 D + + V V E FY+GF L K++ E I+RDES Sbjct: 175 NDPGYSETDFNIAQFKAMVASVYLETWLFYSGFYYPLFFYGQGKLMQAGEIINLILRDES 234 Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292 +H + + ++ + ++ Q L E E E++ + Sbjct: 235 IHGLYVGRLAQEVFETFSNELQEQLTQWVHDFLLELY-HEQNELVESIYDAVELSH--DV 291 Query: 293 EQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345 + ++++ AN+ +G +P F+ + NP + ++ + + + F + YQ+ Sbjct: 292 KIFVRYNANKALMNLGFDPYFEPEDVNPV--VLNGLNTETKTMDNFSMKGNGYQK 344 >gi|1172944|sp|P06474|RIR2_HHV1K RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase 38 kDa subunit; AltName: Full=Ribonucleotide reductase small subunit gi|807641|gb|AAA66436.1| unknown protein [Human herpesvirus 1] Length = 340 Score = 155 bits (393), Expect = 7e-36, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 115/322 (35%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 34 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 90 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E HS + I L + + Y Sbjct: 91 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVAHSRVYNIIQLVLFHNNDQARREY 149 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 150 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 195 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 196 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 251 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 252 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 311 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 312 PLSLMSTDKHTNFFECRSTSYA 333 >gi|30960831|gb|AAP39226.1| UL40 [Human herpesvirus 1] Length = 307 Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 117/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 1 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 58 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K ++ + Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPERVYGLF 218 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALVAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300 >gi|30960813|gb|AAP39214.1| UL40 [Human herpesvirus 1] gi|30960819|gb|AAP39218.1| UL40 [Human herpesvirus 1] Length = 307 Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 117/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 1 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 58 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K ++ + Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPERVYGLF 218 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300 >gi|24943146|ref|NP_733908.1| ORF54 [Callitrichine herpesvirus 3] gi|13676697|gb|AAK38263.1|AF319782_57 ORF54 [callitrichine herpesvirus 3] Length = 302 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 105/294 (35%), Gaps = 20/294 (6%) Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 N W+ + + D + L + K F A +E LV NI + + Sbjct: 23 NRWVAVHISLVRDC---EGVRELNPRDLEFYKFLFTFLAMAEKLVNFNI-DELLPQFCSH 78 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 + Y Q E +H T+ I+ L + + Y A+ + + Sbjct: 79 DIEHYYTEQKAMENIHGETYANILNMLFDGDKKAVAQY---------ADEVIADKALQAK 129 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 + G ++ + + +F ++ EG++F + F I L M GI YI RDE Sbjct: 130 ICWLNGMVNSAVTKAEKILIF-LLIEGIFFISSFYSIAVLRTRGIMPGICLANNYISRDE 188 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 LH + N + ++ + + + A +E + E +G ++ Sbjct: 189 LLHTTAATLLYNSMTSKS----ERPQSEWIEALFRRAVDVEYNFI-EARGRGVTNIDLKG 243 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 +++ A+R +G+ ++ P + K NFFE +EY Sbjct: 244 IRDFLEATADRILGDLGMTAIYDTRPPP-DCPLTYMTSVKHTNFFEQENSEYTM 296 >gi|30960429|gb|AAP38958.1| UL40 [Human herpesvirus 1] gi|30960468|gb|AAP38984.1| UL40 [Human herpesvirus 1] Length = 307 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 1 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 58 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALVAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300 >gi|311992967|ref|YP_004009834.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj61] gi|295815256|gb|ADG36182.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj61] Length = 377 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 56/312 (17%), Positives = 118/312 (37%), Gaps = 22/312 (7%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K+ + A + W P E+ + D + +K L ++ NL + A +++ Sbjct: 32 KHPTIENLTVQALSFFWRPEEINLTTDSSQFK---KLHPRDQRTFTLNLLYQAIMDTVQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + + S+ ++ F E +HS ++ +II +L + E+F+ I A Sbjct: 89 SAPSEILGPICSDIGLDTWIQTWTFFETIHSRSYTHIIRNLYNNPTEIFDSVVLDDQIMA 148 Query: 158 KANWALQYTQTLS--------SPSFTTGTKDA---DQEFLQDLFVFYVVFEGMWFYTGFA 206 +A +Y L T++ ++ E + F+ F Sbjct: 149 RAASICKYYDELEIKWTLYSADKIRGIATEEQLYELKKAFYLCLHTINALEAIRFFVSFI 208 Query: 207 QILSLGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEFQQKS 261 + K M G ++ +I RDE+LH +I +++ E P +E ++++ Sbjct: 209 NTFNFFETQKVMEGNSKIMTFIARDENLHHQGTRYMIKRLQSGEEGPEWIKIAEECREEA 268 Query: 262 RTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE--PLFKYTEN 318 + E + G GL+ Y+ + R +++GL+ + N Sbjct: 269 TNIFLATNEQEKEWCKYVYQSGAPQGLSVGLVSDYIDYATVPRMNELGLDSSSIVAPKRN 328 Query: 319 PFPWMSEVIDLK 330 PFPW+++ + Sbjct: 329 PFPWLTKFLKSN 340 >gi|30960231|gb|AAP38826.1| UL40 [Human herpesvirus 1] gi|30960234|gb|AAP38828.1| UL40 [Human herpesvirus 1] gi|30960237|gb|AAP38830.1| UL40 [Human herpesvirus 1] gi|30960240|gb|AAP38832.1| UL40 [Human herpesvirus 1] gi|30960243|gb|AAP38834.1| UL40 [Human herpesvirus 1] gi|30960246|gb|AAP38836.1| UL40 [Human herpesvirus 1] gi|30960249|gb|AAP38838.1| UL40 [Human herpesvirus 1] gi|30960252|gb|AAP38840.1| UL40 [Human herpesvirus 1] gi|30960255|gb|AAP38842.1| UL40 [Human herpesvirus 1] gi|30960258|gb|AAP38844.1| UL40 [Human herpesvirus 1] gi|30960261|gb|AAP38846.1| UL40 [Human herpesvirus 1] gi|30960264|gb|AAP38848.1| UL40 [Human herpesvirus 1] gi|30960267|gb|AAP38850.1| UL40 [Human herpesvirus 1] gi|30960270|gb|AAP38852.1| UL40 [Human herpesvirus 1] gi|30960273|gb|AAP38854.1| UL40 [Human herpesvirus 1] gi|30960276|gb|AAP38856.1| UL40 [Human herpesvirus 1] gi|30960279|gb|AAP38858.1| UL40 [Human herpesvirus 1] gi|30960282|gb|AAP38860.1| UL40 [Human herpesvirus 1] gi|30960285|gb|AAP38862.1| UL40 [Human herpesvirus 1] gi|30960288|gb|AAP38864.1| UL40 [Human herpesvirus 1] gi|30960291|gb|AAP38866.1| UL40 [Human herpesvirus 1] gi|30960294|gb|AAP38868.1| UL40 [Human herpesvirus 1] gi|30960297|gb|AAP38870.1| UL40 [Human herpesvirus 1] gi|30960300|gb|AAP38872.1| UL40 [Human herpesvirus 1] gi|30960303|gb|AAP38874.1| UL40 [Human herpesvirus 1] gi|30960306|gb|AAP38876.1| UL40 [Human herpesvirus 1] gi|30960309|gb|AAP38878.1| UL40 [Human herpesvirus 1] gi|30960312|gb|AAP38880.1| UL40 [Human herpesvirus 1] gi|30960315|gb|AAP38882.1| UL40 [Human herpesvirus 1] gi|30960318|gb|AAP38884.1| UL40 [Human herpesvirus 1] gi|30960321|gb|AAP38886.1| UL40 [Human herpesvirus 1] gi|30960324|gb|AAP38888.1| UL40 [Human herpesvirus 1] gi|30960327|gb|AAP38890.1| UL40 [Human herpesvirus 1] gi|30960330|gb|AAP38892.1| UL40 [Human herpesvirus 1] gi|30960333|gb|AAP38894.1| UL40 [Human herpesvirus 1] gi|30960336|gb|AAP38896.1| UL40 [Human herpesvirus 1] gi|30960339|gb|AAP38898.1| UL40 [Human herpesvirus 1] gi|30960342|gb|AAP38900.1| UL40 [Human herpesvirus 1] gi|30960345|gb|AAP38902.1| UL40 [Human herpesvirus 1] gi|30960348|gb|AAP38904.1| UL40 [Human herpesvirus 1] gi|30960351|gb|AAP38906.1| UL40 [Human herpesvirus 1] gi|30960354|gb|AAP38908.1| UL40 [Human herpesvirus 1] gi|30960357|gb|AAP38910.1| UL40 [Human herpesvirus 1] gi|30960360|gb|AAP38912.1| UL40 [Human herpesvirus 1] gi|30960363|gb|AAP38914.1| UL40 [Human herpesvirus 1] gi|30960366|gb|AAP38916.1| UL40 [Human herpesvirus 1] gi|30960369|gb|AAP38918.1| UL40 [Human herpesvirus 1] gi|30960372|gb|AAP38920.1| UL40 [Human herpesvirus 1] gi|30960375|gb|AAP38922.1| UL40 [Human herpesvirus 1] gi|30960378|gb|AAP38924.1| UL40 [Human herpesvirus 1] gi|30960381|gb|AAP38926.1| UL40 [Human herpesvirus 1] gi|30960384|gb|AAP38928.1| UL40 [Human herpesvirus 1] gi|30960387|gb|AAP38930.1| UL40 [Human herpesvirus 1] gi|30960390|gb|AAP38932.1| UL40 [Human herpesvirus 1] gi|30960393|gb|AAP38934.1| UL40 [Human herpesvirus 1] gi|30960396|gb|AAP38936.1| UL40 [Human herpesvirus 1] gi|30960399|gb|AAP38938.1| UL40 [Human herpesvirus 1] gi|30960402|gb|AAP38940.1| UL40 [Human herpesvirus 1] gi|30960405|gb|AAP38942.1| UL40 [Human herpesvirus 1] gi|30960408|gb|AAP38944.1| UL40 [Human herpesvirus 1] gi|30960411|gb|AAP38946.1| UL40 [Human herpesvirus 1] gi|30960414|gb|AAP38948.1| UL40 [Human herpesvirus 1] gi|30960417|gb|AAP38950.1| UL40 [Human herpesvirus 1] gi|30960432|gb|AAP38960.1| UL40 [Human herpesvirus 1] gi|30960435|gb|AAP38962.1| UL40 [Human herpesvirus 1] gi|30960438|gb|AAP38964.1| UL40 [Human herpesvirus 1] gi|30960441|gb|AAP38966.1| UL40 [Human herpesvirus 1] gi|30960444|gb|AAP38968.1| UL40 [Human herpesvirus 1] gi|30960447|gb|AAP38970.1| UL40 [Human herpesvirus 1] gi|30960450|gb|AAP38972.1| UL40 [Human herpesvirus 1] gi|30960453|gb|AAP38974.1| UL40 [Human herpesvirus 1] gi|30960456|gb|AAP38976.1| UL40 [Human herpesvirus 1] gi|30960459|gb|AAP38978.1| UL40 [Human herpesvirus 1] gi|30960462|gb|AAP38980.1| UL40 [Human herpesvirus 1] gi|30960471|gb|AAP38986.1| UL40 [Human herpesvirus 1] gi|30960474|gb|AAP38988.1| UL40 [Human herpesvirus 1] gi|30960477|gb|AAP38990.1| UL40 [Human herpesvirus 1] gi|30960480|gb|AAP38992.1| UL40 [Human herpesvirus 1] gi|30960483|gb|AAP38994.1| UL40 [Human herpesvirus 1] gi|30960486|gb|AAP38996.1| UL40 [Human herpesvirus 1] gi|30960489|gb|AAP38998.1| UL40 [Human herpesvirus 1] gi|30960495|gb|AAP39002.1| UL40 [Human herpesvirus 1] gi|30960498|gb|AAP39004.1| UL40 [Human herpesvirus 1] gi|30960501|gb|AAP39006.1| UL40 [Human herpesvirus 1] gi|30960504|gb|AAP39008.1| UL40 [Human herpesvirus 1] gi|30960507|gb|AAP39010.1| UL40 [Human herpesvirus 1] gi|30960510|gb|AAP39012.1| UL40 [Human herpesvirus 1] gi|30960513|gb|AAP39014.1| UL40 [Human herpesvirus 1] gi|30960516|gb|AAP39016.1| UL40 [Human herpesvirus 1] gi|30960519|gb|AAP39018.1| UL40 [Human herpesvirus 1] gi|30960522|gb|AAP39020.1| UL40 [Human herpesvirus 1] gi|30960528|gb|AAP39024.1| UL40 [Human herpesvirus 1] gi|30960531|gb|AAP39026.1| UL40 [Human herpesvirus 1] gi|30960534|gb|AAP39028.1| UL40 [Human herpesvirus 1] gi|30960537|gb|AAP39030.1| UL40 [Human herpesvirus 1] gi|30960540|gb|AAP39032.1| UL40 [Human herpesvirus 1] gi|30960543|gb|AAP39034.1| UL40 [Human herpesvirus 1] gi|30960546|gb|AAP39036.1| UL40 [Human herpesvirus 1] gi|30960549|gb|AAP39038.1| UL40 [Human herpesvirus 1] gi|30960552|gb|AAP39040.1| UL40 [Human herpesvirus 1] gi|30960555|gb|AAP39042.1| UL40 [Human herpesvirus 1] gi|30960558|gb|AAP39044.1| UL40 [Human herpesvirus 1] gi|30960561|gb|AAP39046.1| UL40 [Human herpesvirus 1] gi|30960564|gb|AAP39048.1| UL40 [Human herpesvirus 1] gi|30960567|gb|AAP39050.1| UL40 [Human herpesvirus 1] gi|30960570|gb|AAP39052.1| UL40 [Human herpesvirus 1] gi|30960573|gb|AAP39054.1| UL40 [Human herpesvirus 1] gi|30960576|gb|AAP39056.1| UL40 [Human herpesvirus 1] gi|30960579|gb|AAP39058.1| UL40 [Human herpesvirus 1] gi|30960582|gb|AAP39060.1| UL40 [Human herpesvirus 1] gi|30960585|gb|AAP39062.1| UL40 [Human herpesvirus 1] gi|30960588|gb|AAP39064.1| UL40 [Human herpesvirus 1] gi|30960591|gb|AAP39066.1| UL40 [Human herpesvirus 1] gi|30960594|gb|AAP39068.1| UL40 [Human herpesvirus 1] gi|30960597|gb|AAP39070.1| UL40 [Human herpesvirus 1] gi|30960600|gb|AAP39072.1| UL40 [Human herpesvirus 1] gi|30960603|gb|AAP39074.1| UL40 [Human herpesvirus 1] gi|30960606|gb|AAP39076.1| UL40 [Human herpesvirus 1] gi|30960609|gb|AAP39078.1| UL40 [Human herpesvirus 1] gi|30960612|gb|AAP39080.1| UL40 [Human herpesvirus 1] gi|30960615|gb|AAP39082.1| UL40 [Human herpesvirus 1] gi|30960618|gb|AAP39084.1| UL40 [Human herpesvirus 1] gi|30960621|gb|AAP39086.1| UL40 [Human herpesvirus 1] gi|30960624|gb|AAP39088.1| UL40 [Human herpesvirus 1] gi|30960627|gb|AAP39090.1| UL40 [Human herpesvirus 1] gi|30960630|gb|AAP39092.1| UL40 [Human herpesvirus 1] gi|30960633|gb|AAP39094.1| UL40 [Human herpesvirus 1] gi|30960636|gb|AAP39096.1| UL40 [Human herpesvirus 1] gi|30960639|gb|AAP39098.1| UL40 [Human herpesvirus 1] gi|30960642|gb|AAP39100.1| UL40 [Human herpesvirus 1] gi|30960645|gb|AAP39102.1| UL40 [Human herpesvirus 1] gi|30960648|gb|AAP39104.1| UL40 [Human herpesvirus 1] gi|30960651|gb|AAP39106.1| UL40 [Human herpesvirus 1] gi|30960657|gb|AAP39110.1| UL40 [Human herpesvirus 1] gi|30960660|gb|AAP39112.1| UL40 [Human herpesvirus 1] gi|30960663|gb|AAP39114.1| UL40 [Human herpesvirus 1] gi|30960666|gb|AAP39116.1| UL40 [Human herpesvirus 1] gi|30960669|gb|AAP39118.1| UL40 [Human herpesvirus 1] gi|30960672|gb|AAP39120.1| UL40 [Human herpesvirus 1] gi|30960675|gb|AAP39122.1| UL40 [Human herpesvirus 1] gi|30960678|gb|AAP39124.1| UL40 [Human herpesvirus 1] gi|30960681|gb|AAP39126.1| UL40 [Human herpesvirus 1] gi|30960684|gb|AAP39128.1| UL40 [Human herpesvirus 1] gi|30960687|gb|AAP39130.1| UL40 [Human herpesvirus 1] gi|30960690|gb|AAP39132.1| UL40 [Human herpesvirus 1] gi|30960693|gb|AAP39134.1| UL40 [Human herpesvirus 1] gi|30960696|gb|AAP39136.1| UL40 [Human herpesvirus 1] gi|30960699|gb|AAP39138.1| UL40 [Human herpesvirus 1] gi|30960702|gb|AAP39140.1| UL40 [Human herpesvirus 1] gi|30960711|gb|AAP39146.1| UL40 [Human herpesvirus 1] gi|30960714|gb|AAP39148.1| UL40 [Human herpesvirus 1] gi|30960717|gb|AAP39150.1| UL40 [Human herpesvirus 1] gi|30960720|gb|AAP39152.1| UL40 [Human herpesvirus 1] gi|30960723|gb|AAP39154.1| UL40 [Human herpesvirus 1] gi|30960726|gb|AAP39156.1| UL40 [Human herpesvirus 1] gi|30960732|gb|AAP39160.1| UL40 [Human herpesvirus 1] gi|30960735|gb|AAP39162.1| UL40 [Human herpesvirus 1] gi|30960738|gb|AAP39164.1| UL40 [Human herpesvirus 1] gi|30960741|gb|AAP39166.1| UL40 [Human herpesvirus 1] gi|30960744|gb|AAP39168.1| UL40 [Human herpesvirus 1] gi|30960747|gb|AAP39170.1| UL40 [Human herpesvirus 1] gi|30960750|gb|AAP39172.1| UL40 [Human herpesvirus 1] gi|30960756|gb|AAP39176.1| UL40 [Human herpesvirus 1] gi|30960759|gb|AAP39178.1| UL40 [Human herpesvirus 1] gi|30960762|gb|AAP39180.1| UL40 [Human herpesvirus 1] gi|30960765|gb|AAP39182.1| UL40 [Human herpesvirus 1] gi|30960768|gb|AAP39184.1| UL40 [Human herpesvirus 1] gi|30960771|gb|AAP39186.1| UL40 [Human herpesvirus 1] gi|30960774|gb|AAP39188.1| UL40 [Human herpesvirus 1] gi|30960780|gb|AAP39192.1| UL40 [Human herpesvirus 1] gi|30960783|gb|AAP39194.1| UL40 [Human herpesvirus 1] gi|30960786|gb|AAP39196.1| UL40 [Human herpesvirus 1] gi|30960789|gb|AAP39198.1| UL40 [Human herpesvirus 1] gi|30960792|gb|AAP39200.1| UL40 [Human herpesvirus 1] gi|30960795|gb|AAP39202.1| UL40 [Human herpesvirus 1] gi|30960798|gb|AAP39204.1| UL40 [Human herpesvirus 1] gi|30960801|gb|AAP39206.1| UL40 [Human herpesvirus 1] gi|30960804|gb|AAP39208.1| UL40 [Human herpesvirus 1] gi|30960807|gb|AAP39210.1| UL40 [Human herpesvirus 1] gi|30960810|gb|AAP39212.1| UL40 [Human herpesvirus 1] gi|30960816|gb|AAP39216.1| UL40 [Human herpesvirus 1] gi|30960822|gb|AAP39220.1| UL40 [Human herpesvirus 1] gi|30960825|gb|AAP39222.1| UL40 [Human herpesvirus 1] gi|30960828|gb|AAP39224.1| UL40 [Human herpesvirus 1] gi|30960834|gb|AAP39228.1| UL40 [Human herpesvirus 1] gi|30960840|gb|AAP39232.1| UL40 [Human herpesvirus 1] gi|30960843|gb|AAP39234.1| UL40 [Human herpesvirus 1] gi|30960846|gb|AAP39236.1| UL40 [Human herpesvirus 1] gi|30960849|gb|AAP39238.1| UL40 [Human herpesvirus 1] gi|30960852|gb|AAP39240.1| UL40 [Human herpesvirus 1] gi|30960855|gb|AAP39242.1| UL40 [Human herpesvirus 1] gi|30960858|gb|AAP39244.1| UL40 [Human herpesvirus 1] Length = 307 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 1 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 58 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300 >gi|30960708|gb|AAP39144.1| UL40 [Human herpesvirus 1] Length = 307 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 1 PERYFYTSQCPDINHLRSLSIINRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 58 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300 >gi|30960729|gb|AAP39158.1| UL40 [Human herpesvirus 1] Length = 307 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 117/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 1 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 58 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + ++ + F+ ++ EG++F F Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECAYVPEKFILMILIEGIFFAASF 162 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300 >gi|30960420|gb|AAP38952.1| UL40 [Human herpesvirus 1] gi|30960423|gb|AAP38954.1| UL40 [Human herpesvirus 1] gi|30960426|gb|AAP38956.1| UL40 [Human herpesvirus 1] gi|30960465|gb|AAP38982.1| UL40 [Human herpesvirus 1] gi|30960525|gb|AAP39022.1| UL40 [Human herpesvirus 1] Length = 307 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 1 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 58 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLSGH----AKPPPDRVYGLF 218 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300 >gi|9629622|ref|NP_044898.1| ribonucleotide reductase subunit 2 [Murid herpesvirus 4] gi|6625623|gb|AAF19324.1|AF105037_56 60 [murid herpesvirus 4] gi|1850859|emb|CAA70275.1| ribonucleotide reductase, small subunit [Murid herpesvirus 4] gi|2317992|gb|AAB66450.1| ribonucleotide reductase small [murid herpesvirus 4] Length = 305 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 59/311 (18%), Positives = 111/311 (35%), Gaps = 28/311 (9%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 + E N W P+++P+ D+A L + +R K F +E LV Sbjct: 13 HAGFLELTTETWKNMWFPSQIPLSSDVA---GIAQLNETDREFYKFLFVFLGLAERLVNF 69 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE----GELFNMYREVPS 154 NI + + + + Y Q E +H + I+ + E P+ Sbjct: 70 NI-EDLVKEFNCHDATHYYAEQMAMENIHGKVYANILQLFFNGDMMKLKEYAVKVVADPT 128 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + AK +W T+ + + + + +++ EG++F + F I Sbjct: 129 LKAKLDWL--------------HTRVKNTKTRAEKVLIFLLIEGIFFISSFYSISLFRVR 174 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 + GI YI +DE LH + N + + + + EA +E + Sbjct: 175 GMLNGICLANDYISKDELLHTRAAAVLYNSLIP----AKERPDAAWIKRLFQEAVEVEYS 230 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 + K + ++++Q +R IG+EP++ + P K N Sbjct: 231 FIA-AKSKNVTLVVPGEIKKFLQATCDRILQSIGVEPIYG-SHAPVTCPLSYNGCIKSVN 288 Query: 335 FFETRVTEYQQ 345 FFE T+Y Sbjct: 289 FFEREGTDYST 299 >gi|30960705|gb|AAP39142.1| UL40 [Human herpesvirus 1] gi|30960777|gb|AAP39190.1| UL40 [Human herpesvirus 1] Length = 307 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 1 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 58 SAADDLVTENL-GGLSGLFEQKDIIHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300 >gi|30960654|gb|AAP39108.1| UL40 [Human herpesvirus 1] Length = 307 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 116/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 1 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N + + + Y + Q E VHS + I L + + Y Sbjct: 58 SAADDLVTEN-MGGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300 >gi|322500276|emb|CBZ35354.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 196 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 12/156 (7%) Query: 2 ANNTGLSPIQAGEKRV---------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52 N + P+ AG + + N +++ + L P++Y W KY + Sbjct: 39 TENLVMKPVAAGAEVLTADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESC 98 Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE Sbjct: 99 IWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPE 155 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148 R + Q E +HS T+ ++ + D E + Sbjct: 156 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRL 191 >gi|30960753|gb|AAP39174.1| UL40 [Human herpesvirus 1] Length = 307 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 66/322 (20%), Positives = 117/322 (36%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 1 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 58 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + I + I RDE++H + N + K + + Sbjct: 163 AAIAYLRTNNLLRVICQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300 >gi|30960837|gb|AAP39230.1| UL40 [Human herpesvirus 1] Length = 307 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 115/322 (35%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 1 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 58 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I K +W + + + + F+ ++ EG++F F Sbjct: 117 VAGTINHPAIRTKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPPPDRVYGLF 218 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300 >gi|30960492|gb|AAP39000.1| UL40 [Human herpesvirus 1] Length = 307 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 115/322 (35%), Gaps = 35/322 (10%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE+ D + L++ E + F Sbjct: 1 PERYFYTSQCPDINHLRSLSILNRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFL 57 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 58 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREY 116 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I AK +W + + + + F+ ++ EG++F F Sbjct: 117 VAGTINHPAIRAKVDWLE--------------ARVRECASVPEKFILMILIEGIFFAASF 162 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + + K + + Sbjct: 163 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYTNYLGGH----AKPPPDRVYGLF 218 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 +A +EI + P L+ + E Y++F A+R I ++PLF + Sbjct: 219 RQAVEIEIGFIRSQAPTDSHILSPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASF 278 Query: 323 MSEVIDLKKEKNFFETRVTEYQ 344 ++ K NFFE R T Y Sbjct: 279 PLSLMSTDKHTNFFECRSTSYA 300 >gi|262285102|gb|ACY41130.1| ribonucleotide reductase subunit 2 [Wood mouse herpesvirus] Length = 305 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 59/311 (18%), Positives = 108/311 (34%), Gaps = 28/311 (9%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 + E N W P+++P+ D+A L +R K F +E LV Sbjct: 13 HAGFLELTTETWKNRWFPSQIPLSSDVA---GIAQLNATDREFYKFLFVFLGLAEKLVNF 69 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE----GELFNMYREVPS 154 NI + + + + Y Q E +H + I+ + E P+ Sbjct: 70 NI-EDLVKEFNCHDATHYYAEQMAMENIHGKVYANILQLFFNGDMMKLKEYAVKVVADPT 128 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + AK +W T+ + + + + +++ EG++F + F I Sbjct: 129 LKAKLDWL--------------HTRVKNTKTRAEKVLIFLLIEGIFFISSFYSISLFRVR 174 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 + GI YI +DE LH + N + + + + EA +E A Sbjct: 175 GMLNGICLANDYISKDELLHTRAAAVLYNTLIP----AKERPDPAWIKRLFQEAVEVEYA 230 Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 + K + ++++Q +R IG+ L+ + P K N Sbjct: 231 FIA-AKSKNVTLVVPGEIKRFLQATCDRILQSIGVGALYG-SHAPVTCPLSYNGCIKSVN 288 Query: 335 FFETRVTEYQQ 345 FFE T+Y Sbjct: 289 FFEREGTDYST 299 >gi|291336894|gb|ADD96423.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426] Length = 147 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 67/146 (45%), Positives = 99/146 (67%) Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 +L+LGR NK+ G+++Q +Y +RDESLH+NFG +IN +K + P +WTK+F++++ + Sbjct: 1 MLLALGRQNKLPGLSDQIRYTLRDESLHINFGTYLINTLKEQYPTIWTKKFEEETIEHIK 60 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 +A LEI YAH+ +P+G +GLNA YM +I NRR IGL+ F+ NPFPW+SEV Sbjct: 61 KAVQLEINYAHDVLPRGILGLNADMFVDYMHYIGNRRLEGIGLDYRFESDTNPFPWLSEV 120 Query: 327 IDLKKEKNFFETRVTEYQQGAELKWD 352 +D NFFE +V +YQ L+ D Sbjct: 121 VDTGAMTNFFERKVKDYQNSGVLEDD 146 >gi|139472853|ref|YP_001129417.1| ORF60 [Human herpesvirus 8] gi|1718316|gb|AAC57145.1| ORF 60 [Human herpesvirus 8 type M] gi|2246534|gb|AAB62659.1| ORF 60 [Human herpesvirus 8] gi|87196889|gb|ABD28915.1| ORF60 [Human herpesvirus 8] gi|261853541|gb|ACY00463.1| ORF60 [Human herpesvirus 8] gi|312275208|gb|ADQ57945.1| core gene UL40 family protein [Human herpesvirus 8] Length = 305 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 57/307 (18%), Positives = 107/307 (34%), Gaps = 20/307 (6%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 + N W P+++P+ D++ + L+D ++ + F +E LV Sbjct: 13 HDGFLALTRETWQNRWFPSQIPLHLDVSH---VHQLSDADKDFYRFLFTFLGMAERLVNF 69 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 NI + + ++ + Y Q E +H + I+ + Y Sbjct: 70 NI-EDLVTNFNSHDVAHYYAEQVAMENIHGVVYANILKIFFNNSRGELLAYA-------- 120 Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 A L L ++ + +++ EG++F + F I M Sbjct: 121 AKIILD--PALCEKLEWLHSRVRKATTKAQKILMFLIVEGIYFISSFYSISLCRVRGIMP 178 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 G+ YI RDE LH + N + + K + + + EA +EI + Sbjct: 179 GVCLANDYISRDELLHTKAASMLYNTMV----EIQEKPSHAEVQALFREAVNIEIRFIQ- 233 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFET 338 G +N ++++ A+R I + P+F T P K NFFE Sbjct: 234 AKAAGVTLVNVVDIRRFLEATADRILRDIFVPPIFG-TPPPEACPLSYTGSFKAVNFFER 292 Query: 339 RVTEYQQ 345 ++Y Sbjct: 293 DNSDYTT 299 >gi|254992907|ref|ZP_05275097.1| ribonucleotide-diphosphate reductase subunit beta [Listeria monocytogenes FSL J2-064] Length = 229 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 14/214 (6%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 S + + Y + Y N+W+P EV M+ D + L++ E+ Sbjct: 28 GETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAFDAI 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEG 143 +G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++ Sbjct: 85 IGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQN 143 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 +F + R P+I + + + + E L + + EG+ FY+ Sbjct: 144 RVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFYS 195 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 GFA +L R NKM G + +I RDE H F Sbjct: 196 GFAYFYNLVRQNKMTGTGKIISFINRDELAHSKF 229 >gi|22550280|gb|AAN01603.1| ribonucleotide reductase small subunit [Human herpesvirus 2 strain G] Length = 342 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 65/325 (20%), Positives = 119/325 (36%), Gaps = 36/325 (11%) Query: 36 PLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 P +Y + N W+ TE + + + L++ E + F Sbjct: 31 PERYFYTSQCPDINHLRSLSILNRWLETETELVFVGDEEEDVSKLSEGELGFYRFLFAFL 90 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 ++++ LV N+ + + Y + Q E VHS + I L + + Y Sbjct: 91 SAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAY 149 Query: 150 R----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 P+I K +W + + + + + F+ ++ EG++F F Sbjct: 150 VARTITHPAIRVKVDWLE--------------ARVRECDSIPEKFILMILIEGVFFAASF 195 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 A I L N + + I RDE++H + N + K + + Sbjct: 196 AAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH----AKPEAARVYRLF 251 Query: 266 HEATLLEIAYAHETMPKGFVGLNAP---SCEQYMQFIANRRCHQIGLEPLFKYTENPFP- 321 EA +EI + P L+ + E Y++F A+R I ++PL+ + P P Sbjct: 252 REAVDIEIGFIRSQAPTDSSILSPGALAAIENYVRFSADRLLGLIHMQPLYSASA-PAPD 310 Query: 322 --WMSEVIDLKKEKNFFETRVTEYQ 344 + ++ K NFFE R T Y Sbjct: 311 ASFPLSLMSTDKHTNFFECRSTSYA 335 >gi|159146681|gb|ABW90785.1| ribonucleotide reductase subunit 2 [Leporid herpesvirus 4] Length = 316 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 64/324 (19%), Positives = 118/324 (36%), Gaps = 31/324 (9%) Query: 32 NQLLPLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 N +P +Y + N W+ +E+ D + L+ +E + Sbjct: 6 NNDIPERYFYTSECPDINRLRSLSILNRWLESELVFSGDERD---VDKLSPEELDFYRFL 62 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 F ++++ LV + + S + Y + Q E VHS + I L + Sbjct: 63 FTFLSAADDLVTEEL-GRLSSLFSQKDILHYYVEQECIEVVHSRVYSIIQMVLFKSDE-- 119 Query: 146 FNMYREVPSITAKANWALQYTQT--LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 TA+ N+ + + + D + + F+ ++ EG++F Sbjct: 120 ----------TARRNYVANTVHSSAIQPKVRWLEARVRDCPSVPEKFILMILIEGIFFAA 169 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 FA I L N + + I RDE++H + N + + K ++ + Sbjct: 170 SFAAIAFLRTHNILKVTCQSNDLISRDEAVHTTASCCLYNNYLGQ----YAKPPSERIKQ 225 Query: 264 MLHEATLLEIAYAHETMPKGFVGLN---APSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + A +EIA+ P L+ + E Y++F A+R IG LF Sbjct: 226 LFSNAVEIEIAFIKAKAPANSRILDGAAIAAIESYVRFSADRLLKLIGEPALFDEPPPND 285 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQ 344 + ++ +K NFFE R T Y Sbjct: 286 GFPLRLMSTEKHTNFFECRSTAYA 309 >gi|301750612|gb|ADK88940.1| ribonucleotide reductase subunit 2 [Leporid herpesvirus 4] Length = 316 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 64/324 (19%), Positives = 118/324 (36%), Gaps = 31/324 (9%) Query: 32 NQLLPLKY------GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 N +P +Y + N W+ +E+ D + L+ +E + Sbjct: 6 NNDIPERYFYTSECPDINRLRSLSILNRWLESELVFSGDERD---VDKLSPEELDFYRFL 62 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 F ++++ LV + + S + Y + Q E VHS + I L + Sbjct: 63 FTFLSAADDLVTEEL-GRLSSLFSQKDILHYYVEQECIEVVHSRVYSIIQMVLFKSDE-- 119 Query: 146 FNMYREVPSITAKANWALQYTQT--LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 TA+ N+ + + + D + + F+ ++ EG++F Sbjct: 120 ----------TARRNYVANTVHNSAIQAKVRWLEARVRDCPSVPEKFILMILIEGIFFAA 169 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 FA I L N + + I RDE++H + N + + K ++ + Sbjct: 170 SFAAIAFLRTHNILKVTCQSNDLISRDEAVHTTASCCLYNNYLGQ----YAKPPSERIKQ 225 Query: 264 MLHEATLLEIAYAHETMPKGFVGLN---APSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + A +EIA+ P L+ + E Y++F A+R IG LF Sbjct: 226 LFSNAVEIEIAFIKAKAPANSRILDGAAIAAIESYVRFSADRLLKLIGEPALFDEPPPND 285 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQ 344 + ++ +K NFFE R T Y Sbjct: 286 GFPLRLMSTEKHTNFFECRSTAYA 309 >gi|326803224|ref|YP_004321042.1| ribonucleoside-diphosphate reductase, beta subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650868|gb|AEA01051.1| ribonucleoside-diphosphate reductase, beta subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 337 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 111/331 (33%), Gaps = 30/331 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N+++ K W N W+P +P+ +DL W N L DD + +I R Sbjct: 28 NWNKIVDEKDLEVWN---RVTQNFWLPENIPVSNDLPSW---NELDDDWQQLITRTFTGL 81 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ ++ +A ++ + + AF VH+ ++ I ++L Sbjct: 82 TLLDTVQSSIGDVAQIKNSLTEQEQVIYANFAFMVGVHARSYGTIFSTLC---------- 131 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 I W + + P AD + + G Y GF Sbjct: 132 -TSEQIEEAHEWVVDNEALQARPKALIPFYTADDPLKSKI--AAALMPGFLLYGGFYLPF 188 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 L K+ ++ + I+RD+ +H + + E +Q +L + Sbjct: 189 YLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEKQAEMKQFVFDLLDKMI 248 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSEV 326 LE Y H+ + A ++ + A + +G E F E P + Sbjct: 249 GLEKTYLHQLYDGFGL---ADEAIRFSLYNAGKFLQNLGYESPFTKEETRIAPEVFAQLS 305 Query: 327 IDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + +FF + Y G + WD Sbjct: 306 ARADENHDFFSGSGSSYIIGTSEETLDEDWD 336 >gi|321496611|ref|YP_004207896.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru] gi|320332513|gb|ADW24401.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru] gi|320332596|gb|ADW24483.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru] Length = 307 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 62/317 (19%), Positives = 107/317 (33%), Gaps = 28/317 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L + + N W P ++P+ D L++ ++ K F +E Sbjct: 10 LYVVDHPGFLALTEETWKNRWFPYQIPLAVDAKD---VTKLSETDKEFYKFLFIFLGLAE 66 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV- 152 LV NI + + + + + Y Q E +H + I+ + Y Sbjct: 67 KLVNFNIDELLVG-IHSHDAKHYYDEQEAMENIHGKVYANILNLFFEGDKAKMRQYAHFV 125 Query: 153 ---PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 P + AK +W K + + + + +++ EG++F + F I Sbjct: 126 VGNPGLKAKLSWLHD--------------KVREATTIAEKVLVFLLIEGIFFVSSFYSIG 171 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 L G+ YI RDE LH + N + K + EA Sbjct: 172 LLRVRGICNGVCLANDYISRDELLHTRAAALLYNTLV----DPDRKPPVHWIHNLFREAV 227 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +EI + E +G +N +++ A+R QI L L+ P Sbjct: 228 DVEIRFIRER-GRGVTAVNIEDIISFLKATADRMLTQIKLPILYGELA-PSGCPLAFNAC 285 Query: 330 KKEKNFFETRVTEYQQG 346 K NFFE T+Y Sbjct: 286 VKNINFFEREGTDYSSS 302 >gi|46401830|ref|YP_006922.1| putative aerobic ribonucleoside diphosphate reductase, small subunit [Enterobacteria phage T5] gi|45775008|gb|AAS77140.1| putative aerobic ribonucleoside diphosphate reductase, small subunit [Enterobacteria phage T5] gi|51512032|gb|AAU05231.1| ribonucleotide reductase beta subunit [Enterobacteria phage T5] gi|59897231|gb|AAX12026.1| ribonucleoside diphosphate reductase I beta chain [Enterobacteria phage T5] Length = 381 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 70/316 (22%), Positives = 122/316 (38%), Gaps = 25/316 (7%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + + L A + W TE+ ++ D W L + + + NL + ++S + Sbjct: 30 VAHPELERLALLARSQFWTETEISLEADKKQW---PNLPREIQEITLLNLAWQTQTDSFI 86 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 + AI +S PE L + ++ E +HS + II ++ D E + + Sbjct: 87 SRAPEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAF 146 Query: 157 AKANWALQYTQTL---------------SSPSFTTGTKDADQEFLQDLFVFYVV---FEG 198 A+ +++ L + T + +E L Y E Sbjct: 147 ARIADSVELFDELYQLGQYFIAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGLEA 206 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 M FY FA +L + + GIA+ Q I +DE+LH +I + + E Sbjct: 207 MQFYASFACTFALAENDILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVDEAV 266 Query: 259 QKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFK 314 K+ L + EI + H + +GLNA E+Y+ F+ IG+E L Sbjct: 267 AKAPAQLLKTLKTEIEWGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVEWPSHLPV 326 Query: 315 YTENPFPWMSEVIDLK 330 T+NP PW+ +D Sbjct: 327 ITKNPIPWIMNWLDTT 342 >gi|182682906|ref|YP_001837030.1| putative aerobic ribonucleoside diphosphate reductase, small subunit [Enterobacteria phage EPS7] gi|182630618|gb|ACB97550.1| putative aerobic ribonucleoside diphosphate reductase, small subunit [Enterobacteria phage EPS7] Length = 381 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 71/316 (22%), Positives = 122/316 (38%), Gaps = 25/316 (7%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + + L + W TE+ ++ D W L D + + NL + ++S + Sbjct: 30 VAHPELERLALLQRSQFWTETEISLEADKKQW---PNLPRDIQEITLLNLAWQTQTDSFI 86 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 + AI +S PE L + ++ E +HS + II ++ D E + + Sbjct: 87 SRAPEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAF 146 Query: 157 AKANWALQYTQTL---------------SSPSFTTGTKDADQEFLQDLFVFYVV---FEG 198 A+ +++ L + T + +E L Y E Sbjct: 147 ARIADSVELFDELYLLGQYFLAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGLEA 206 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 M FY FA +L + + GIA+ Q I +DE+LH +I + + E Sbjct: 207 MQFYASFACTFALAENDILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVDEAL 266 Query: 259 QKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFK 314 K+ T L + EI + H + +GLNA E+Y+ F+ IG+E L Sbjct: 267 AKAPTQLLKTLKTEIEWGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVEWPSHLPV 326 Query: 315 YTENPFPWMSEVIDLK 330 T+NP PW+ +D Sbjct: 327 ITKNPIPWIMNWLDTT 342 >gi|32453719|ref|NP_861928.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage RB69] gi|32350538|gb|AAP76137.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage RB69] Length = 390 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 63/352 (17%), Positives = 129/352 (36%), Gaps = 38/352 (10%) Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73 ++V+V ++ M ++ +E+ + + W P EV + D A + N Sbjct: 7 TQQVDVLNEPMFFGSGLGLARYDIQRHKVFEELIEILSFFWRPEEVNLMLDSAQF---NK 63 Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L ++ + NL + + +S+ + +S+P ++ F E +HS ++ + Sbjct: 64 LPQFQQDICTNNLKYQSLLDSIQGRAPSAVLMALISDPSLDTWVATWTFSETIHSRSYTH 123 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT--------------- 178 I+ +L D ++F+ +I +A +Y + + Sbjct: 124 IMRNLYTDPSKVFDEIVLDEAIMKRAESIGKYYDDVLVKTRNWENAKEVYECSIGSCQQN 183 Query: 179 ------------KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQ 225 K + L E + FY FA + + M G A+ + Sbjct: 184 DIEMYEEIMFNAKRDLMKSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMK 243 Query: 226 YIMRDESLHLN----FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 +I RDE LHL ++ + + K +K T L + + +A Sbjct: 244 FIARDEQLHLRVLSTLSVNFNLVLMAMSGFKLLKNVNKKQLTFLWKLIVKYKEWAAHLFK 303 Query: 282 KGFVG-LNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330 G +N S ++ ++ R Q GL P+ T++P+PW+ E ++ Sbjct: 304 DGTCPGINTQSMCAFVDYLTVSRMKQCGLPCPITDAPTKHPYPWIREYLNSD 355 >gi|326632980|ref|YP_004306569.1| putative aerobic ribonucleoside diphosphate reductase small subunit [Enterobacteria phage SPC35] gi|321272174|gb|ADW80066.1| putative aerobic ribonucleoside diphosphate reductase small subunit [Enterobacteria phage SPC35] Length = 381 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 121/316 (38%), Gaps = 25/316 (7%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + + L + W TE+ ++ D W L + + + NL + ++S + Sbjct: 30 VAHPELERLALLQRSQFWTETEISLEADKKQW---GNLPREIQEITLLNLAWQTQTDSFI 86 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 + AI +S PE L + ++ E +HS + II ++ D E + + Sbjct: 87 SRAPEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAF 146 Query: 157 AKANWALQYTQTL---------------SSPSFTTGTKDADQEFLQDLFVFYVV---FEG 198 A+ +++ L + T + +E L Y E Sbjct: 147 ARIADSVELFDELYQLGQYFIAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGLEA 206 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 M FY FA +L + + GIA+ Q I +DE+LH +I + + E Sbjct: 207 MQFYASFACTFALAENDILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVNEAV 266 Query: 259 QKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFK 314 K+ L + EI + H + +GLNA E+Y+ F+ IG++ L Sbjct: 267 AKAPAQLLKTLKTEIEWGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVKWPSHLPV 326 Query: 315 YTENPFPWMSEVIDLK 330 T+NP PW+ +D Sbjct: 327 ITKNPIPWIMNWLDTT 342 >gi|13095637|ref|NP_076552.1| ribonucleotide reductase small subunit [Bovine herpesvirus 4] gi|12802587|gb|AAK07979.1|AF318573_59 ribonucleotide reductase small subunit [Bovine herpesvirus 4] Length = 305 Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats. Identities = 64/323 (19%), Positives = 115/323 (35%), Gaps = 40/323 (12%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 + + N W P++V + D+ KS L +R K F +ESLV Sbjct: 13 HQGFLKLLHETWQNRWFPSQVSLHGDVNHLKS---LNVQDREFYKFLFTFLGMAESLVNF 69 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-DEGELFN---MYREVPS 154 NI I + + + Y Q E +H+ ++ I+ D E++ M + Sbjct: 70 NI-EDIIKQFESHDMLHYYTEQMAMENIHARMYENILNMFFNNDPAEMYRYTQMIINDRA 128 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + K +W +++S+ + + +++ EG++F + F I L Sbjct: 129 LIRKLDWLHSRIKSVSNK--------------AEKVLLFLLVEGIFFVSSFYSIGLLRVR 174 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKSRTMLHEATLLE 272 G+ YI RDE LH + N + + PH+ + EA +E Sbjct: 175 GMFNGVCLANDYISRDELLHTRAAALLYNTMVSGADKPHML------WVHNLFKEAVEVE 228 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL---EPLFKYTENPFPWMSEVIDL 329 + G +N +++ A+R I L + P Sbjct: 229 HEFI-LVKSSGVSAVNVDDIRSFLEATADRILKSINLPPIYGTPPPPKCPLV----YTGC 283 Query: 330 KKEKNFFETRVTEYQQGAELKWD 352 K NFFE ++Y + +K D Sbjct: 284 VKNVNFFERDNSDYT--SSIKDD 304 >gi|219681363|ref|YP_002456127.1| putative ribonucleoside diphosphate reductase beta chain [Erwinia phage phiEa21-4] gi|327198492|ref|YP_004327080.1| ribonucleoside diphosphate reductase beta chain [Erwinia phage phiEa104] gi|199580630|gb|ACH89017.1| putative ribonucleoside diphosphate reductase beta chain [Erwinia phage phiEa21-4] gi|311875188|emb|CBX44448.1| ribonucleoside diphosphate reductase beta chain [Erwinia phage phiEa104] Length = 365 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 63/324 (19%), Positives = 130/324 (40%), Gaps = 13/324 (4%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 Y ++ Y W EV +++ +++ E + NL + ++S V+ Sbjct: 36 YPELFDLYKQQKAQDWSEDEVNLENSRIDFQTAAK---SEIEVCIENLLWQWEADSRVSR 92 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 NI+ + +SN E + +Q E +H+ T+ I+ D E+ + ++ + Sbjct: 93 NIITLLAPFISNNEFAAMVTKQTEIENLHALTYSEIVRQCISDPTEMIKRVMDNQAVLDR 152 Query: 159 ANWALQYTQTLS--SPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGR 213 ++ L G + D+ Q L F V EG+ F FA +L + Sbjct: 153 SSTIDDVMAELEILGAKKRLGYELDDEHIRQTLIKFMVSILALEGLEFIASFACTFALAQ 212 Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT-KEFQQKSRTMLHEATLLE 272 +G+A+ Q IM DE LH ++ + + + + + + +L E E Sbjct: 213 RGLFMGVAQLVQKIMLDEILHSKMDFAALDILLKDPVWFQSYQNCKGDVQRILDEVMENE 272 Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDL 329 +A +G VGLN ++++ + A + L+ + +NP P+M + +++ Sbjct: 273 SNWADYIFSEGRSVVGLNPTLLKEWVYYSAKPLYDFLNLDYNYPVVVKNPLPYMDKWMNI 332 Query: 330 KKEKNF-FETRVTEYQQGAELKWD 352 ++N E ++Y + D Sbjct: 333 DSQQNANQEQDNSQYLLNTMVNDD 356 >gi|207345015|gb|EDZ71971.1| YGR180Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 224 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 24/231 (10%) Query: 122 FEEAVHSHTFQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 E ++S + ++ + D + F +P + K + ++ Sbjct: 1 MMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKTAFIERWI------------- 47 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D + V + EG++ +A + L M G+A + I RD + +F Sbjct: 48 SNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSC 107 Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + HL TK + ++ EA +E Y ++P G++ S Y++F+ Sbjct: 108 LLF-------AHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFV 160 Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 A+ G E + NPF +M +V K FFE +V++YQ+ +++ Sbjct: 161 ADGLLQGFGNEKYYNAV-NPFEFMEDVATAGKTT-FFEKKVSDYQKASDMS 209 >gi|325171172|ref|YP_004251147.1| ribonucleoside diphosphate reductase, beta chain [Vibrio phage ICP1] gi|323512567|gb|ADX88022.1| ribonucleoside diphosphate reductase, beta chain [Vibrio phage ICP1] gi|323513935|gb|ADX89384.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2001_A] gi|323514163|gb|ADX89611.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2004_A] Length = 450 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 62/302 (20%), Positives = 134/302 (44%), Gaps = 13/302 (4%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 Y ++ + + W E+ + D ++S + T D ++ + L + ++SL + Sbjct: 37 YPELFKLFKLMKSLDWSEDEIRLHQDRMDFESVDQSTYD---VMIKTLSWQYEADSLASR 93 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 +IV ++N + Q +LR + EA+HS T+ II + ++F +T + Sbjct: 94 SIVTLFAPFITNSDLSQMMLRWSDNEALHSTTYSEIIRQCLKNPDDIFEEITSNKDVTER 153 Query: 159 ANWALQYTQTLS--SPSFTTGTKDADQEFLQDLFVFYVV----FEGMWFYTGFAQILSLG 212 + + L +T + ++ ++++ + +V E M F FA +L Sbjct: 154 SYKIAEAFSKLKTLGARYTLSKESVSEKEIREVILKTIVSLYCLEQMEFMASFACTFALA 213 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT-KEFQQKSRTMLHEATLL 271 +G+A Q IM DE++H +IN + + L T ++ + + ++ Sbjct: 214 EREIFLGVASLVQKIMIDETIHTRMDEAIINILLGDEVWLKTFEDIKPDIKEIVDSVYKQ 273 Query: 272 EIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVID 328 E++++ +G VGLN ++++Q+ + ++G+E F+ NP PWM +D Sbjct: 274 ELSWSEYIFSEGRSIVGLNTSLLKEWVQYKSQVVYKKLGIEQPFEDVINNPLPWMENWLD 333 Query: 329 LK 330 + Sbjct: 334 ID 335 >gi|323512793|gb|ADX88247.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2006_D] gi|323513021|gb|ADX88474.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2006_C] gi|323513246|gb|ADX88698.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2006_B] gi|323513473|gb|ADX88924.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2006_A] gi|323513704|gb|ADX89154.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage ICP1_2005_A] Length = 450 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 62/302 (20%), Positives = 134/302 (44%), Gaps = 13/302 (4%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 Y ++ + + W E+ + D ++S + T D ++ + L + ++SL + Sbjct: 37 YPELFKLFKLMKSLDWSEDEIRLHQDRMDFESVDQSTYD---VMIKTLSWQYEADSLASR 93 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 +IV ++N + Q +LR + EA+HS T+ II + ++F +T + Sbjct: 94 SIVTLFAPFITNSDLSQMMLRWSDNEALHSTTYSEIIRQCLKNPDDIFEEITSNKDVTER 153 Query: 159 ANWALQYTQTLS--SPSFTTGTKDADQEFLQDLFVFYVV----FEGMWFYTGFAQILSLG 212 + + L +T + ++ ++++ + +V E M F FA +L Sbjct: 154 SYKIAEAFSKLKTLGARYTLSKESVSEKEIREVILKTIVSLYCLEQMEFMASFACTFALA 213 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT-KEFQQKSRTMLHEATLL 271 +G+A Q IM DE++H +IN + + L T ++ + + ++ Sbjct: 214 EREIFLGVASLVQKIMIDETIHTRMDEAIINILLGDEVWLKTFEDIKPDIKEIVDSVYKQ 273 Query: 272 EIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVID 328 E++++ +G VGLN ++++Q+ + ++G+E F+ NP PWM +D Sbjct: 274 ELSWSEYIFSEGRSIVGLNTSLLKEWVQYKSQVVYKKLGIEQPFEDVINNPLPWMENWLD 333 Query: 329 LK 330 + Sbjct: 334 ID 335 >gi|213612729|ref|ZP_03370555.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 234 Score = 147 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 82/232 (35%), Gaps = 19/232 (8%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--- 182 + +II ++ D +F+ I +A Y L + GT + Sbjct: 123 YTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKT 182 Query: 183 --------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226 ++ L + E + FY FA + M G A+ + Sbjct: 183 VVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRL 234 >gi|320450283|ref|YP_004202379.1| ribonucleoside-diphosphate reductase subunit beta [Thermus scotoductus SA-01] gi|320150452|gb|ADW21830.1| ribonucleoside-diphosphate reductase, subunit beta [Thermus scotoductus SA-01] Length = 323 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 52/315 (16%), Positives = 119/315 (37%), Gaps = 18/315 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y + +++W+ TE D+ + + R +++R+L + E Sbjct: 11 PYEYPRLLAYRDAIRHSYWLHTEFSYAADVQDYALAG---PEVRSLVERSLLAISQVELS 67 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V Y PE + + A E H++ + +++ L L++ + +E Sbjct: 68 V-KLFWARTYEVFPKPEVAEVGMTFAESEVRHANAYAHLLDLLALEDRFAQALEKET--- 123 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA- 214 AL+ + + + + L +F E ++ F +++L + Sbjct: 124 ------ALRERHRHLTAVLGSAFRGDLRGHALALLLFSAFTEHASLFSQFYVLMALNKRL 177 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 + GI+ + ++E+LH FG++++ ++ E P L+ F +++ + E A Sbjct: 178 GRFKGISNAIEATSKEENLHGLFGVELLRILREERPDLFGPSFTEEALDRVEAFFRTEEA 237 Query: 275 YAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSEVIDLK 330 +G + +++++ N+ GL F + W + Sbjct: 238 LLEWIFARGDTEAVRGEEVLEFLKWRYNQVLALHGLPAPFPVRKECLRDTEWFDLELLAD 297 Query: 331 KEKNFFETRVTEYQQ 345 KE +FF R Y + Sbjct: 298 KEVDFFNKRSVAYAR 312 >gi|226331040|ref|ZP_03806558.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198] gi|225201835|gb|EEG84189.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198] Length = 182 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 23/190 (12%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P ++P+ +D+ W + LT E+ + R Sbjct: 13 NWNRIEDEKDLEVWN---RLTMNFWLPEKIPLSNDIPSWST---LTQAEKQLTIRVFTGL 66 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + P L F EAVH+ ++ I ++L L D E + Sbjct: 67 TLLDTIQNTVGAPTLMPDALTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDEAYR 126 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 E P + KA L+Y Q D++ L+ V E FY+GF Sbjct: 127 WSEENPYLQKKAEIILRYYQ--------------DEDPLKKKI-ASVFLESFLFYSGFYL 171 Query: 208 ILSLGRANKM 217 + K+ Sbjct: 172 PMYWSSRGKI 181 >gi|170587050|ref|XP_001898292.1| ribonucleotide reductase 2 [Brugia malayi] gi|158594687|gb|EDP33271.1| ribonucleotide reductase 2, putative [Brugia malayi] Length = 288 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 7/176 (3%) Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75 R + + +L + + P+K+ W+ Y A + W EV + D W++ L Sbjct: 40 RYESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDWEN---LN 96 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 D ER I R L FFA+S+ +V N+V + + PE R + Q E +HS + +I Sbjct: 97 DGERHFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENIHSEMYSKMI 156 Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 + D+ + +R+ L + +S DA QE+L + Sbjct: 157 DTYIRDQKQK--KFRKFCVTLCFLEINLSNYKKFTS--MFNACIDAKQEYLTEALP 208 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 79/203 (38%), Gaps = 18/203 (8%) Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 W + D ++ F+ + F+ +G+ + + ++ Sbjct: 78 WTVDEVDLSKDYRDWENLNDGERHFISRVLAFFAASDGIVNEN---LVNRFSQEVQVPEA 134 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPH-------------LWTKEFQQKSRTMLHE 267 Y + + E++H +I+ + +K +M + Sbjct: 135 RFFYGFQIMIENIHSEMYSKMIDTYIRDQKQKKFRKFCVTLCFLEINLSNYKKFTSMFNA 194 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 + Y E +P +G+N QY++++A+ ++ ++ +++NPF +M E I Sbjct: 195 CIDAKQEYLTEALPVDLIGINCKLMCQYIEYVADHLLTELHCAKIY-HSDNPFDFM-ERI 252 Query: 328 DLKKEKNFFETRVTEYQQGAELK 350 ++ + NFFE RV+EYQ+ L Sbjct: 253 SIEAKTNFFEKRVSEYQKAGVLS 275 >gi|332018842|gb|EGI59398.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex echinatior] Length = 176 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 3/146 (2%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 ++ + GL ++ N + +L + + P++Y W+ Y A + W EV Sbjct: 33 ISQDHGLKNGVQLKEDFNPKLEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASFWTIEEVS 92 Query: 61 MQD-DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + D W L DE+ I L FFA+S+ +V N++ + + PE R + Sbjct: 93 LHKQDKKDWNE--KLNSDEKRFISHVLAFFAASDGIVNENLIEKFSQEVKIPEARCFYGF 150 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGEL 145 Q E +HS + +I + D E Sbjct: 151 QIAIENIHSEMYSLLIETYISDPKEK 176 >gi|269867180|ref|XP_002652512.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220062330|gb|EED41544.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 196 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 6/150 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQT 168 + E FN +PSI KA WA ++ + Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIAS 172 >gi|32709417|gb|AAP86727.1| NrdB [Enterobacteria phage LZ2] Length = 313 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 101/282 (35%), Gaps = 36/282 (12%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELTEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFTTGT----------------------------KDADQEFLQDL 189 +A +Y + + K A + L Sbjct: 149 RAESIGRYYDDVLIKTREWENAKEFVELSKESPDADFRLNRAIKQEAEAKRALMKSLYLC 208 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 E + FY FA + + M G A+ ++I RDE LHL +I Q+++ Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLG 268 Query: 249 NPHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 +E +Q++ + E E +A G V Sbjct: 269 TDGDEWVKIAQECEQEAVDIFMEVNRQEKDWAVHLFKDGDVP 310 >gi|313607545|gb|EFR83848.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria monocytogenes FSL F2-208] Length = 187 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 4/177 (2%) Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231 ++ + E L + + EG+ FY+GFA +L R NKM G + +I RDE Sbjct: 2 DAYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDE 61 Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 H F +VI I ENP L T+E + + A LE ++ E + +G G++ Sbjct: 62 LAHSKFISEVIRAILGENPELQTEELVEYTHEAFRHAVELETEWSEEVL-QGIEGIDVEE 120 Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345 Y+++ AN+ +G+ L+ +++N W+ D + + +FFE R + Y++ Sbjct: 121 MVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTETKTDFFEMRNSSYKK 177 >gi|256844583|ref|ZP_05550068.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] gi|256613124|gb|EEU18328.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] Length = 276 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 89/259 (34%), Gaps = 20/259 (7%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 25 GKNMRAINWNDIKDEKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 81 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 82 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 141 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E ++ A+A + Y TG + + G Y Sbjct: 142 EAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 186 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF L K+ A+ + I+RD+ +H + + E ++ Sbjct: 187 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 246 Query: 264 MLHEATLLEIAYAHETMPK 282 L + LE Y HE Sbjct: 247 FLDKLIDLEKKYLHELYDD 265 >gi|291092706|gb|ADD74390.1| ribonucleotide reductase small subunit [uncultured virus] Length = 181 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 80/199 (40%), Gaps = 22/199 (11%) Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 K L FFA S+ +V N+V Y + E R + QA E +H+ + +I +L Sbjct: 1 DFFKCILAFFAPSDGIVGENLVTRFYEMVVYTEARYFYAFQAAMENIHAEVYSQLIKTLI 60 Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 +E E F+ + P IT K WA Q+ + + + V + V Sbjct: 61 PNEDEQRSIFSSFMTTPGITEKTRWAKQW-------------LERENLSFVERLVAFAVV 107 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG+ F FA I L + M G+ + I RDE LH +F + + H+ K Sbjct: 108 EGLLFSGSFASIFWLKKRGLMHGLTFSNELISRDEGLHCDFACLLYTK------HIVHKL 161 Query: 257 FQQKSRTMLHEATLLEIAY 275 ++ EA E + Sbjct: 162 PNNVIYNIVREAVHAESIF 180 >gi|256843983|ref|ZP_05549470.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] gi|256613888|gb|EEU19090.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] Length = 287 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 89/259 (34%), Gaps = 20/259 (7%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 +K E + N W+P ++P+ +D++ W N L+DD + +I R Sbjct: 36 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 92 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143 ++ ++ +A ++ + AF AVH+ ++ I ++L E Sbjct: 93 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 152 Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203 E ++ A+A + Y TG + + G Y Sbjct: 153 EAHEWVVNNDTLQARAKAVIPYY---------TGNDPLKSKVAAAIMP------GFLLYG 197 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 GF L K+ A+ + I+RD+ +H + + E ++ Sbjct: 198 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 257 Query: 264 MLHEATLLEIAYAHETMPK 282 L + LE Y HE Sbjct: 258 FLDKLIDLEKKYLHELYDD 276 >gi|269865675|ref|XP_002652006.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063328|gb|EED42049.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 183 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 6/150 (4%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142 Query: 142 EGEL---FNMYREVPSITAKANWALQYTQT 168 + E FN +PSI KA WA ++ + Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIAS 172 >gi|9631250|ref|NP_048031.1| small subunit of ribonucleotide reductase [Ateline herpesvirus 3] gi|4019286|gb|AAC95584.1| small subunit of ribonucleotide reductase [Ateline herpesvirus 3] Length = 305 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 61/303 (20%), Positives = 109/303 (35%), Gaps = 20/303 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 E N W P++VP+Q D+ + L + + K F +E LV NI Sbjct: 16 FLELTKETWKNRWFPSQVPLQGDV---CCVDLLNERDIEFYKFLFTFLGMAEKLVNINI- 71 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + + + Y Q E +H + I+ L + + + + A+ Sbjct: 72 EDLLGQFESHDISHYYAEQMAMENIHGKVYANILNMLFKN---------NITEVYSYAHD 122 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + G + + + +F ++ EG++F + F I L M GI Sbjct: 123 IMNDCALQEKIRWLNGRVTETSDKAEKILLF-LLVEGIFFISSFFSIGLLRVRGIMNGIC 181 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 YI RDE LH + + N + + + ++ + EA +E + Sbjct: 182 LANDYIARDEMLHTSAAALLYNTMTKPS----ERPPEKWIYELFREAVEVEFKFIS-AKV 236 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 G +N Q++Q A+R I L P++ P K NFFE + Sbjct: 237 HGVSHVNVHEIRQFLQATADRILESINLNPIYHSVP-PANCPLVYTSSTKSVNFFERDNS 295 Query: 342 EYQ 344 +Y Sbjct: 296 DYT 298 >gi|14970916|emb|CAC44510.1| putative ribonucleotide reductase small subunit [Sphaerechinus granularis] Length = 141 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 16/154 (10%) Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141 L FFA+S+ +V N+V + + E R + Q E +HS + +I + D Sbjct: 1 HVLAFFAASDGIVNENLVERFSQEVQIAEARCFYGFQIAIENIHSEMYSLLIDAYIKDAV 60 Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 LFN +P +T KA WAL + +D V + EG++ Sbjct: 61 QRDYLFNAVETMPCVTKKAQWALDWI-------------SSDSADFGTRIVAFAAVEGIF 107 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 F FA I L + M G+ + I RDE LH Sbjct: 108 FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLH 141 >gi|206968243|ref|ZP_03229199.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH1134] gi|228951833|ref|ZP_04113931.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957726|ref|ZP_04119470.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pakistani str. T13001] gi|229069003|ref|ZP_04202296.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus F65185] gi|206737163|gb|EDZ54310.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH1134] gi|228714115|gb|EEL65997.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus F65185] gi|228801969|gb|EEM48842.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807756|gb|EEM54277.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 193 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 12/187 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMR 229 I+R Sbjct: 187 IINLIIR 193 >gi|329575046|gb|EGG56598.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecalis TX1467] Length = 212 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 19/222 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + + WEK W+ T +P+ +DL W++ L+D E+ + G Sbjct: 9 NWNAIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 +++ + + + + + P L F E+VH+ ++ I ++L + E+ +++ Sbjct: 63 TLLDTVQSESGMDQLRNDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTL-NTKKEIDDIF 121 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 N LQY + + GT + + V E FY+GF L Sbjct: 122 E-----WTNTNKHLQYKAERINEIYKNGTPLEKK-------IASVFLETFLFYSGFYTPL 169 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 NK+ +AE + I+RDES+H + E P Sbjct: 170 YYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPE 211 >gi|196040724|ref|ZP_03108023.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus NVH0597-99] gi|196028514|gb|EDX67122.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus NVH0597-99] Length = 193 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 12/187 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKS-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMR 229 I+R Sbjct: 187 IINLIIR 193 >gi|229172092|ref|ZP_04299657.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus MM3] gi|228611435|gb|EEK68692.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus MM3] Length = 193 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 12/187 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMR 229 I+R Sbjct: 187 IINLIIR 193 >gi|149408186|ref|YP_001294620.1| hypothetical protein ORF027 [Pseudomonas phage PA11] Length = 322 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 62/325 (19%), Positives = 115/325 (35%), Gaps = 30/325 (9%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 Y A + + W E+ ++ D+ + +T+ E + L F E + Sbjct: 13 FDYPEAIQFAKVQSSIFWTDDEINVEKDIQDIR--VNMTEAEAHGVITTLRLFTLYELVA 70 Query: 97 ANNIVL-AIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154 + L + + P+ + F E VH+ + I +L L+ E + Y P Sbjct: 71 GRDYWLGRVLKTFPRPDIERMAATFGFFELNVHAPFYNKINEALMLNTDEFYLAYVNDPI 130 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL--G 212 + + + + + + L L F +V EG Y+ FA + Sbjct: 131 LKERMEFVDSLVE--------------EDDPLYSLGAFSMV-EGAVLYSSFAFLKHFQAK 175 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL---WTKEFQQKSRTMLHEAT 269 NK++ + + +RDE+LH G + N +K E + H Sbjct: 176 GKNKLMNVVRGINFSVRDENLHCEGGAWLYNTLKQEIKSEGGYINPNLEYDLANCAHTIA 235 Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN-PFPWMSEVI 327 E KG G+ A + +++ N Q+G+EP+F+ + N W + I Sbjct: 236 EHEFRIVDMIFEKGEMEGITAEQMKTFVKSRVNICLAQLGIEPVFEVSNNIVAEWFYDGI 295 Query: 328 DLKKEKNFFETRVTEYQQGAELKWD 352 + +FF Y + WD Sbjct: 296 NGVMFHDFFSGIGNSYNRS----WD 316 >gi|217958930|ref|YP_002337478.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH187] gi|222095086|ref|YP_002529146.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus Q1] gi|229138141|ref|ZP_04266739.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST26] gi|229195650|ref|ZP_04322416.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1293] gi|217065393|gb|ACJ79643.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH187] gi|221239144|gb|ACM11854.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus Q1] gi|228587899|gb|EEK45951.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus m1293] gi|228645486|gb|EEL01720.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus BDRD-ST26] Length = 193 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 12/187 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W E+ + D W L+ +E++ KR LG ++ + + Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162 HL N + + L E VH+ ++ +I T+L +E ++F P + KA Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y + L P + ++ L V V E FY+GF L L K+ E Sbjct: 134 TSYYRRLLKP-------EVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186 Query: 223 QYQYIMR 229 I+R Sbjct: 187 IINLIIR 193 >gi|302321458|gb|ADL16651.1| RNR2 [Abalone herpesvirus Victoria/AUS/2007] Length = 642 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 67/315 (21%), Positives = 128/315 (40%), Gaps = 34/315 (10%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 +Y + N W E+ DLA+W L + R IK L F A + +V Sbjct: 73 RYPVLADLADKLQANQWKANEIEPSKDLAVWVD---LPEPVRKCIKGALTFVAVGDIVVK 129 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 I + + EC ++ Q E+ H + +T+ ++ EL + ++ Sbjct: 130 EAIPMH-MSNFPLTECGKFFQEQLINESEHQKLYTKFLTTFAHNKEELETLMHAYTNVEE 188 Query: 158 KANWALQYTQTLSSPSFTTGTK--DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 A L+ L + + +G++ + + +L F +F M TG Sbjct: 189 FA--PLKAKVDLINEIYKSGSRAEQVLYQTVMELIGFCSLFSIMLMPTG----------- 235 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275 + + E Q + DE+LH +F + N + + +K + ++ +A +EIA+ Sbjct: 236 -LKTLIEGNQSVRNDETLHGSFYAALHNIMP-------DRASPEKVKEIIVKAVEIEIAF 287 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK------YTENPFPWMSEVIDL 329 A + + +N S + +++ AN C +G+EP++ +P +M+ L Sbjct: 288 AMSIVTEDLEHINPSSMQLHIKATANLCCEFLGVEPIYFDRWTKLPVVSPLSYMNNYETL 347 Query: 330 KKEKNFFETRVTEYQ 344 +K NFFE R +Y Sbjct: 348 QK-FNFFEVRNMDYS 361 >gi|46255232|ref|YP_006144.1| ribonucleoside-diphosphate reductase beta chain [Thermus thermophilus HB27] gi|46198081|gb|AAS82491.1| ribonucleoside-diphosphate reductase beta chain [Thermus thermophilus HB27] Length = 324 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 119/320 (37%), Gaps = 18/320 (5%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 P +Y + +++W+ TE Q DL + ER +++R L A Sbjct: 7 RLAYRPYEYPELLRFRDAIRHSYWVHTEFSFQSDLQD---HALADEKERSLVERALLAIA 63 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 E V +Y PE + L A E H++ + + L E F Sbjct: 64 QVELAV-KLFWARVYDRFPKPEIAEVGLTFAESEVRHANAYAH--LLELLGLEEAFGQAL 120 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210 E S AL+ + +E+ LF+F E + ++ F +++ Sbjct: 121 EGAS-------ALRDRAQALGEALRRAQGKDLREYALALFLFSAFTEHVSLFSQFYVLMA 173 Query: 211 LGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 L R + GI+ + ++E++H FG++++ ++ E+P + FQ+++ + Sbjct: 174 LNRRGNRYKGISNAIEATSKEENVHGLFGVELLRLLRTEHPEALGEGFQEEALRLAQGLF 233 Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325 E A G + ++++ N+ GL P F E W + Sbjct: 234 RAEEALLDWLFSAGEPALVGHRETLEFLKGRYNQVLALHGLPPPFPVDEKALRDTEWFTL 293 Query: 326 VIDLKKEKNFFETRVTEYQQ 345 + KE +FF R Y + Sbjct: 294 ELLADKEVDFFNKRSVAYAR 313 >gi|300362837|ref|ZP_07059008.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus gasseri JV-V03] gi|300353073|gb|EFJ68950.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus gasseri JV-V03] Length = 275 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 50/291 (17%), Positives = 94/291 (32%), Gaps = 28/291 (9%) Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131 N L+DD + +I R ++ ++ +A ++ + AF AVH+ ++ Sbjct: 2 NQLSDDWQQLITRTFTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSY 61 Query: 132 QYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 I ++L E E ++ A+A + Y TG + + Sbjct: 62 GTIFSTLCTSEQIEEAHEWVVNNDALQARAKAVIPYY---------TGNDPLKSKVAAAI 112 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 G Y GF L K+ A+ + I+RD+ +H + + Sbjct: 113 MP------GFLLYGGFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKL 166 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 E ++ L + LE Y HE + + A + +G Sbjct: 167 APAKQAEMKKFVFDFLDKLIDLEKKYLHELYDD---FDLVDDAIHFSLYNAGKFLQNLGY 223 Query: 310 EPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352 + F E +P + + +FF + Y G + WD Sbjct: 224 DSPFTAEETYISPEVFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 274 >gi|301331892|gb|ADK70922.1| U27.5 [Elephant endotheliotropic herpesvirus 2] Length = 301 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 64/303 (21%), Positives = 120/303 (39%), Gaps = 21/303 (6%) Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + Y + N W+ ++ +D +K L + + K F +E LV N+ Sbjct: 12 DFRQLYRTVTENRWLEGQISFLND---YKHILLLDEKTKEYYKFIFCFLGMAEHLVNFNL 68 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 I L +P+ Y + Q E VH+ T++ I+ ++ D E +I A+ Sbjct: 69 FDMI-ERLEDPDVIHYYIEQMSIECVHARTYRRIL-NIFYDNDEK--------AIMCAAD 118 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220 + L+ L SF T + + L + ++ EG++F + F I L G Sbjct: 119 FYLKDPALLKKISFLEKTI-RECDTLGKKIIVLILIEGIFFLSSFVSIAMLRTIG-FDGT 176 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 E YI RDES+H + + + ++ + +E + + Sbjct: 177 TEANTYICRDESIHTTAATKLY----LNYVTPENRPSYSFIYSLFSDVIRIEKEFIN-AK 231 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340 G +N ++ +A++ +I ++PL+ T+ P + ++K FFE R Sbjct: 232 VDGVGLINKKVIFDTLEGVADQLLARINMQPLY-ATQIPNNCPLPLSTIEKNVCFFEKRN 290 Query: 341 TEY 343 TEY Sbjct: 291 TEY 293 >gi|30348565|emb|CAC84357.1| RRsmall [Saimiriine herpesvirus 2] Length = 305 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 60/303 (19%), Positives = 107/303 (35%), Gaps = 20/303 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 E N W P++VP+Q D+ + L + + K F +E LV NI Sbjct: 16 FLELTKETWKNRWFPSQVPLQGDV---CCVDMLNERDLEFYKFLFTFLGMAEKLVNINI- 71 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + + + Y Q E +H + I++ L + + + + A Sbjct: 72 EDLLSQFDSHDVSHYYAEQMAMENIHGKVYANILSMLFKN---------NITEVYSYACD 122 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + + G + + + +F ++ EG++F + F I M GI Sbjct: 123 IMNDSALQEKLKWLNGRVTEASDKAEKILLF-LLVEGIFFISSFFSIGLFRVRGIMNGIC 181 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 YI RDE LH + + N + + + + EA +E + Sbjct: 182 LANDYIARDEMLHTSAAALLYNTMTK----SSERPSEDWIYKLFREAVEVEFKFIA-AKG 236 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 G +N Q++Q A+R I L P++ P K NFFE + Sbjct: 237 HGVSLVNVHEIRQFLQATADRILESINLNPIYGSLP-PENCPLAYTSSTKSVNFFERDNS 295 Query: 342 EYQ 344 +Y Sbjct: 296 DYT 298 >gi|221104331|ref|XP_002154681.1| PREDICTED: similar to ribonucleotide reductase small subunit, partial [Hydra magnipapillata] Length = 261 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 26/250 (10%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPL--KYGWAWEKYLSACNNHWMPTEVPM 61 + L A +++ ++ +LN + P+ K+ W+ Y + +W E+ Sbjct: 21 SRLLLEYDANDEKKKDSEEEILNKDLSRLVVKPINSKHKVIWDLYKKQKDAYWTAEEIDF 80 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 +D + + + + IKR L FFA ++S+V NI + + ++ E Q Sbjct: 81 SNDRHDFLKVDK---NIQHFIKRILAFFAGADSIVNINIKKKLSK-ITVKEAEIAYGFQQ 136 Query: 122 FEEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 E HS + ++ + D EL N ++ V SI WA ++ + ++ Sbjct: 137 MMEDTHSEVYADMLIKIITDPVERDELINAFKTVASIKRMIQWAQRWINSKRRIGYS--- 193 Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR---ANKMVGIAEQYQYIMRDESLHL 235 V + +FEG+ F FA I L + + M G+ + I +DE +H Sbjct: 194 -----------IVVFCIFEGLMFSGAFAGIYWLKKILGEDIMKGLIQSNNLIAKDEGMHT 242 Query: 236 NFGIDVINQI 245 FG + I Sbjct: 243 IFGCVIYTFI 252 >gi|9626016|ref|NP_040262.1| ribonucleotide reductase, small subunit [Saimiriine herpesvirus 2] gi|266917|sp|Q01038|RIR2_SHV21 RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleotide reductase small subunit gi|66391|pir||WMBEP5 ribonucleoside-diphosphate reductase (EC 1.17.4.1) small chain - saimiriine herpesvirus 1 (strain 11) gi|60381|emb|CAA45683.1| ribonucleotide reductase, small subunit [Saimiriine herpesvirus 2] gi|330989|gb|AAA46136.1| ribonucleotide reductase small subunit [Saimiriine herpesvirus 2] Length = 305 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 60/303 (19%), Positives = 106/303 (34%), Gaps = 20/303 (6%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 E N W P++VP+Q D+ + L + + K F +E LV NI Sbjct: 16 FLELTKETWKNRWFPSQVPLQGDV---CCVDMLNERDLEFYKFLFTFLGMAEKLVNINI- 71 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + + + Y Q E +H + I+ L + + + + A Sbjct: 72 EDLLSQFDSHDISHYYAEQMAMENIHGKVYANILNMLFKN---------NITEVYSYACD 122 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + + G + + + +F ++ EG++F + F I M GI Sbjct: 123 IMNDSALQEKLRWLNGRVTEASDKAEKILLF-LLVEGIFFISSFFSIGLFRVRGIMNGIC 181 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 YI RDE LH + + N + + + + EA +E + Sbjct: 182 LANDYIARDEMLHTSAAALLYNTMTK----SSERPSEDWIYKLFREAVEVEFKFIA-AKG 236 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 G +N Q++Q A+R I L P++ P K NFFE + Sbjct: 237 YGVSLVNVHEIRQFLQATADRILESINLNPIYGSLP-PENCPLAYTSSTKSVNFFERDNS 295 Query: 342 EYQ 344 +Y Sbjct: 296 DYT 298 >gi|221783|dbj|BAA00748.1| UL40 [Human herpesvirus 2] Length = 262 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 56/274 (20%), Positives = 101/274 (36%), Gaps = 26/274 (9%) Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E + F ++++ LV N+ + + Y + Q E VHS + I Sbjct: 1 ELGFYRFLFAFLSAADDLVTENL-GGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLV 59 Query: 138 LGLDEGELFNMYR----EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 L + + Y P+I K +W + + + + + F+ Sbjct: 60 LFHNNDQARRAYVARTINHPAIRVKVDWLE--------------ARVRECDSIPEKFILM 105 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 ++ EG++F FA I L N + + I RDE++H + N + Sbjct: 106 ILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYLGGH---- 161 Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS---CEQYMQFIANRRCHQIGLE 310 K + + EA +EI + P L+ + E Y++F A+R I ++ Sbjct: 162 AKPEAARVYRLFREAVDIEIGFIRSQAPTDSSILSPGALAAIENYVRFSADRLLGLIHMQ 221 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 PL+ + ++ K NFFE R T Y Sbjct: 222 PLYSAPAPDASFPLSLMSTDKHTNFFECRSTSYA 255 >gi|330941350|gb|EGH44202.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 109 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 66/109 (60%), Positives = 82/109 (75%) Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR Sbjct: 1 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 60 Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD Sbjct: 61 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 109 >gi|37651592|ref|NP_932466.1| hypothetical protein 44RRORF111c [Aeromonas phage 44RR2.8t] gi|66391913|ref|YP_238838.1| hypothetical protein PHG31p109 [Aeromonas phage 31] gi|34732892|gb|AAQ81430.1| hypothetical protein 44RRORF111c [Aeromonas phage 44RR2.8t] gi|62114750|gb|AAX63598.1| hypothetical protein PHG31p109 [Aeromonas phage 31] Length = 323 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 57/327 (17%), Positives = 102/327 (31%), Gaps = 32/327 (9%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 ++Y + W E + +D ++ LT E I L F E V Sbjct: 10 IRYPEFAALADEQMHAFWPWDEPVVDNDAQDLRT--KLTPGELNGITTVLKLFTIYERKV 67 Query: 97 ANNIVL-AIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154 + I R PE + + E H+ + + L LD+ + ++E Sbjct: 68 GEDYWTGRIARTFGRPEINRMATLFSAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKESEE 127 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-- 212 ++ + + K F + EG Y+ FA + Sbjct: 128 LSRRIQFVG---------------KSVSDPDDAKSFAAFTFIEGAVLYSSFAFLKHFQAQ 172 Query: 213 --RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH----LWTKEFQQKSRTMLH 266 + M I + DE H G + + E ++ + M H Sbjct: 173 ECGKDLMRNICRGVDLSVADEHHHSIGGAMLFRTLCREMMEHHKVDVREKLKDDIIAMAH 232 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSE 325 + E + G+ A +++ N +G +P+F+ NP W Sbjct: 233 QVYDHESGIIDLVFAEPIDGITADELRIFVKSRINLCLENLGYDPIFEIESNPIASWFYR 292 Query: 326 VIDLKKEKNFFETRVTEYQQGAELKWD 352 I+ KK +FF +EY + WD Sbjct: 293 TINAKKFHDFFTGSGSEYN----INWD 315 >gi|218296962|ref|ZP_03497648.1| ribonucleotide reductase [Thermus aquaticus Y51MC23] gi|218242665|gb|EED09201.1| ribonucleotide reductase [Thermus aquaticus Y51MC23] Length = 323 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 58/315 (18%), Positives = 120/315 (38%), Gaps = 18/315 (5%) Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 P +Y + +++W+ TE D+ + +++R+L A E Sbjct: 11 PYEYPGLLRFRDAIRHSYWVHTEFSYSADVQD---HALAEPPVQSLVERSLLAIAQVELS 67 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V +Y PE + + A E H++ + +++ LGL+ F Y E + Sbjct: 68 V-KLFWARVYDRFPKPEVAEVGMTFAESEVRHANAYAHLLDLLGLEG--RFARYLEEATP 124 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA- 214 AL+ + +E+ L +F E + ++ F +++L R Sbjct: 125 LRDRAGALE-------GVLARSKNASLEEYALSLLLFSAFVEHISLFSQFYALMALNRRA 177 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 N+ GIA + ++E++H FG++++ ++ E P L+ + F ++ E E A Sbjct: 178 NRFKGIANAVEATSKEENIHGLFGVELLRLLREERPELFGEAFVEEVLRAAQELFRAEEA 237 Query: 275 YAHETMPKGFVGLNA-PSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVIDLK 330 G ++++ N+ GL F+ + W + + Sbjct: 238 LVDWIFAGGDTPWVRGEEVLEFVKDRYNQVLALHGLPGPFQVRDEVLKDTAWFALELLAD 297 Query: 331 KEKNFFETRVTEYQQ 345 K+ +FF R Y + Sbjct: 298 KDVDFFNKRSVAYAR 312 >gi|327197767|ref|YP_004301465.1| gp132 [Brochothrix phage A9] gi|299810367|gb|ADJ53166.1| gp132 [Brochothrix phage A9] Length = 203 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 21/220 (9%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 +N ++R ++ + + + + W T VP+ +DL W++ L Sbjct: 1 MNETERRAKAGVYKAINWNEIEDNYDKQTWEKLNSQFWTATRVPVSNDLDDWRT---LDP 57 Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIY-RHLSNPECRQYLLRQAFEEAVHSHTFQYII 135 + + + G ++L + + +L++ +P R L F EA+H+ ++ I Sbjct: 58 VAKDLYGKVFGGLTLLDTLQSQDGMLSLLNNETQSPHMRAVLSNMLFMEAIHAQSYSTIF 117 Query: 136 TSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++L + +F+ + KA+ + Q + P + Sbjct: 118 STLMTPQEIANVFDFTHTNEHLQKKAHLINEVYQNGTVPQ---------------KMIAS 162 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 V E FY+GF L KM +AE + I+RDES+ Sbjct: 163 VFLESGLFYSGFYTPLYYLGNGKMANVAEVIRLILRDESV 202 >gi|291336893|gb|ADD96422.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426] Length = 172 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 102/158 (64%), Gaps = 1/158 (0%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90 VNQ+LP K+ W+ +L + N+W P E+ M D+ WK + L+DDE+L++KR LGFFA Sbjct: 15 VNQILPHKHKSVWDNFLKSVANNWSPAEINMSTDIKQWK-GDDLSDDEKLLVKRCLGFFA 73 Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150 SESLVANN++L + R +++ ECRQY+LRQA+EE++H+ T S GL E+F Y+ Sbjct: 74 GSESLVANNLLLTVARWVTDAECRQYILRQAYEESLHNWTVVTCCDSFGLKVSEVFEAYQ 133 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 + SI AK ++ + T ++ F+T T + + F + Sbjct: 134 NIESIKAKDDFLMGITTDVNRQGFSTKTSEGKRIFKKS 171 >gi|109290088|ref|YP_656337.1| hypothetical protein PHG25ORF102c [Aeromonas phage 25] gi|104345761|gb|ABF72661.1| hypothetical protein PHG25ORF102c [Aeromonas phage 25] Length = 332 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 55/318 (17%), Positives = 101/318 (31%), Gaps = 28/318 (8%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY + + W E + +D+ ++ LT E I L F E V Sbjct: 19 IKYPEFGKLADEQMHAFWPWDEPVVDNDIQDLRT--KLTPGELNGITTVLKLFTIYERKV 76 Query: 97 ANNIV-LAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154 + I PE + + E H+ + + L LD+ + ++E Sbjct: 77 GEDYWSGRIAHTFGRPEINRMATLFSAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKESEE 136 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-- 212 ++ + + K + F + EG Y+ FA + Sbjct: 137 LSRRIQFVG---------------KSVNDPDDAKSFAAFTFIEGAVLYSSFAFLKHFQAQ 181 Query: 213 --RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLH 266 + M I + DE H G + + E + ++ + M Sbjct: 182 ECGKDLMRNICRGVDLSVADEHHHSIGGAMLFQTLCREMKEKYGEDVRAKLKNDIINMAR 241 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSE 325 + E + G+ A +++ N +G EP+F+ NP W Sbjct: 242 QVFDHESGIIDLVFAEPIDGITADELRVFVKSRINLCLENLGYEPIFEIENNPIADWFYR 301 Query: 326 VIDLKKEKNFFETRVTEY 343 I+ KK +FF +EY Sbjct: 302 TINAKKFHDFFTGSGSEY 319 >gi|310722361|ref|YP_003969185.1| hypothetical protein phiAS4_ORF0167 [Aeromonas phage phiAS4] gi|306021204|gb|ADM79739.1| hypothetical protein phiAS4_ORF0167 [Aeromonas phage phiAS4] Length = 332 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 57/318 (17%), Positives = 101/318 (31%), Gaps = 28/318 (8%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 +KY + + W E + +D ++ LT E I L F E V Sbjct: 19 IKYPEFAKLADEQMHAFWPWDEPVVDNDAQDLRT--KLTPGELNGITTVLKLFTIYERKV 76 Query: 97 ANNIV-LAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154 + I R PE + A E H+ + + L LD+ + ++E Sbjct: 77 GEDYWSARIARTFGRPEINRMATLFAAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKESEE 136 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-- 212 ++ + + K F + EG Y+ FA + Sbjct: 137 LSRRIQFVG---------------KSVSDPDDAKSFAAFTFIEGAVLYSSFAFLKHFQAQ 181 Query: 213 --RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLH 266 + M I + DE H G + + E + ++ + M + Sbjct: 182 ECGKDLMRNICRGVDLSVADEHHHSIGGAMLFQTLCREMKEKYGEDVRAKLKNDIINMAY 241 Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSE 325 + E + G+ A +++ N +G EP+F+ NP W Sbjct: 242 QVFDHESGIIDLVFAEPIDGITADELRVFVKSRINLCLENLGYEPIFEIENNPIADWFYR 301 Query: 326 VIDLKKEKNFFETRVTEY 343 I+ KK +FF +EY Sbjct: 302 TINAKKFHDFFTGSGSEY 319 >gi|290992332|ref|XP_002678788.1| predicted protein [Naegleria gruberi] gi|284092402|gb|EFC46044.1| predicted protein [Naegleria gruberi] Length = 330 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 56/318 (17%), Positives = 117/318 (36%), Gaps = 32/318 (10%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNN-HWMPTEVP--MQDDLALWKSKNGLTDDE 78 + +L+ L P++Y WE Y + W + +++D++ + + + + Sbjct: 15 EEILSENPHRFTLFPIQYPKLWEIYKKRLASSIWSVEQFDQIIRNDIS---KLSEICNSD 71 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 IK L F ++ N+ A + + E + + + + +H + + L Sbjct: 72 HSFIKIILAFLVANC-KQKTNLWGAF-KDIQILEAKHFHGFRLAMKNIHYEMYCNLFEIL 129 Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 T ++ + + S T + + V E Sbjct: 130 --------------TEETERSELIEKMINSTMKKSQYTKKWLNSDNLFSERLIGLVCIEQ 175 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 ++ F I L + M + I RDE H NF + + +K +K Q Sbjct: 176 IFLSASFFSIFWLKKRGLMSALTISNDLIFRDEEFHSNFLYSLYSNLKH------SKLPQ 229 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 +++ EA +E + ++P + L+ S QY++ +++ G E LF +TEN Sbjct: 230 TLVHSLVKEAVDIEKEFIT-SLPTELIELDRNSMYQYVEVVSDNILISFGYEKLF-HTEN 287 Query: 319 PFPWMSEVIDLKKEKNFF 336 W+ +++ K FF Sbjct: 288 QCSWIQDMLMNKSG--FF 303 >gi|296082342|emb|CBI21347.3| unnamed protein product [Vitis vinifera] Length = 227 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 3/113 (2%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ ++ +L D + P++Y WE Y A + W EV + D W++ LT D Sbjct: 3 SIPEEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWEN---LTSD 59 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 E+ I L FFA+S+ +V N+ + + E R + Q E +HS Sbjct: 60 EKHFISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEI 112 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 58/99 (58%), Gaps = 2/99 (2%) Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311 L K +++ + ++ ++ +E + + +P VG+N+ QY++F+A+R +G Sbjct: 114 LRNKLSEERVKAIVADSVDIEREFVCDALPCALVGMNSALMSQYIEFVADRLLGALGYGK 173 Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 ++ + NPF WM E+I L+ + NFFE RV EYQ+ + + Sbjct: 174 MYNVS-NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 210 >gi|119360103|gb|ABL66780.1| At5g40942 [Arabidopsis thaliana] Length = 231 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 ++ ++ +L D + P++Y WE Y A + W EV + D W+ N LT+D Sbjct: 3 SMPEEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTND 60 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 ER IK L FFA+S+ +V N+ + E R + Q E +HS Sbjct: 61 ERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEI 113 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 87/207 (42%), Gaps = 27/207 (13%) Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF---YT 203 MY++ + A + + + + ++ F++ + F+ +G+ T Sbjct: 29 EMYKKAEASFWTAEEVDL---SQDNRDWENSLTNDERHFIKHVLAFFAASDGIVLENLST 85 Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 F + + A G E++H L TK + + + Sbjct: 86 RFMSDVQISEARAFYGFQIAI------ENIHSEIL-------------LRTKFDEDRLKA 126 Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM 323 ++ +A +E + + + VG+N QY++F+A+R +G ++ T NPF WM Sbjct: 127 IVCDAVEIEREFVCDALSCALVGMNRELMSQYIEFVADRLLAALGCGKVYGVT-NPFDWM 185 Query: 324 SEVIDLKKEKNFFETRVTEYQQGAELK 350 E+I L+ + NFFE RV EYQ+ + + Sbjct: 186 -ELISLQGKTNFFEKRVGEYQKASVMS 211 >gi|213646443|ref|ZP_03376496.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824706|ref|ZP_06544205.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 240 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 10/215 (4%) Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 Y E+ +T+ + + T T++ + ++ ++ L E + FY FA Sbjct: 20 AYYDELIEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNA-LEAIRFYVSFA 78 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSR 262 + M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ Sbjct: 79 CSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECY 138 Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 + +A E +A G +GLN QY+++I N R +GL+ F+ NP P Sbjct: 139 DLFVQAAQQEKEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIP 198 Query: 322 WMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 W++ + + E V+ Y Q +E+ D Sbjct: 199 WINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTD 233 >gi|326333061|ref|ZP_08199312.1| ribonucleoside-diphosphate reductase, beta subunit [Nocardioidaceae bacterium Broad-1] gi|325949135|gb|EGD41224.1| ribonucleoside-diphosphate reductase, beta subunit [Nocardioidaceae bacterium Broad-1] Length = 334 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 109/323 (33%), Gaps = 31/323 (9%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 Y A + + W E+P+++D + +TD E+ +K L F E ++ Sbjct: 20 FDYPMAEDLAKKQRSIFWTAEEIPVENDKQDF--LVNMTDAEQAAVKTTLKLFTIYELIL 77 Query: 97 ANNIV-LAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154 + ++ PE + +F E +H+ + + +L +D E ++ Y+ P Sbjct: 78 GGEVWGDRLFHAFPRPEIQMMTNAFSFAELNMHAPFYAKLNKTLMIDTEEFYDSYKNDPV 137 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI--LSLG 212 + + + + L + + E Y+ FA + G Sbjct: 138 LAERIAFVWDAIAD---------------DDLLYALSVFTLMENCVLYSNFAFLKHFQSG 182 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN--------PHLWTKEFQQKSRTM 264 N + + + RDE+LH G + N E + + R + Sbjct: 183 GKNLLQNVISGINFSARDENLHATGGAWLFNTTLDEYAATVPADKFEAERDDLFARVRGV 242 Query: 265 LHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PW 322 E G + + E +++ + + +EPLF NP W Sbjct: 243 AEHLYAHEARIVEMLFAHGPITGIEQADLEAFVRSRIDMTLENMRMEPLFGVEPNPVAEW 302 Query: 323 MSEVIDLKKEKNFFETRVTEYQQ 345 I+ + +FF+ EY + Sbjct: 303 FYAGINGTQFHDFFQVTGNEYNR 325 >gi|308183791|ref|YP_003927923.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047717|gb|ADO00260.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 242 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 54/250 (21%), Positives = 90/250 (36%), Gaps = 27/250 (10%) Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWAL 163 + + L E++H+ ++ I+TSL E+F P + KA Sbjct: 3 PDVRTRKEAAVLNDFLMMESIHAKSYGTILTSLNDQATVDEVFKWMNNNPRMQYKAKRIN 62 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 QT ++ V EG+ +YT F L NK+ ++E Sbjct: 63 DIYQTGNNLEKKV---------------ASVFLEGILYYTNFFTPLWYRGNNKLANLSEV 107 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PK 282 + ++RDES+H + E K F++ +L + E A+ E P Sbjct: 108 IKLVIRDESVHGTYLGYKFQLGYNELSATEQKTFKKWMDELLDDLLENEFAFTEEVYAPI 167 Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFET 338 G A +Q++ + AN+ +GLE F E NP M+ + +FF Sbjct: 168 GL----AEDVKQFVHYNANKALQNMGLESRFPNAEIKDINPIV-MNGISTETANHDFFSQ 222 Query: 339 RVTEYQQGAE 348 Y G Sbjct: 223 VGAGYLMGNA 232 >gi|194172964|ref|YP_002003608.1| ribonucleoside diphosphate reductase beta chain [Escherichia phage rv5] gi|114796002|gb|ABI79176.1| ribonucleoside diphosphate reductase beta chain [Escherichia phage rv5] Length = 362 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 60/326 (18%), Positives = 138/326 (42%), Gaps = 16/326 (4%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY +E Y W EV + ++ + + + T D ++ + L + ++S+ A Sbjct: 33 KYPQLFELYKKQKEQDWAEDEVDLSQSISDFVTCSKSTYD---VMVQTLMWQWEADSVAA 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 +I+ ++N E L++Q+ E +H+ T+ I+ + E+ +E ++ + Sbjct: 90 RSIICLFSPFITNSELFTLLMKQSEIEVLHALTYSEIVRQCLPNAREIIEEIQENQNVLS 149 Query: 158 KANWALQYTQTL--SSPSFTTGTKDADQEFLQDLFVFYVVF----EGMWFYTGFAQILSL 211 ++ ++Y Q L + ++ ++ + + E + F FA ++ Sbjct: 150 RSGVIVKYMQELEVIGAKYRLDPSSVKEDIVRKCILRALFALLALESIEFIASFACTFAV 209 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATL 270 V +A+ Q IM DE LH +I+ + + + E + + + +L E Sbjct: 210 AEQGIFVQVAQLVQKIMLDEMLHSKGDFAIIDILLNDPAWEKSFLEIKGELKEILDEVRT 269 Query: 271 LEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVI 327 E ++ +G +GLN+P ++++ + + G++ F T++P P+M + Sbjct: 270 KEYGWSDYIFSEGRAIIGLNSPLLKEWVDYNCSPIYDYYGIDKDFVPPTKDPLPFMQVWM 329 Query: 328 --DLKKEKNFFETRVTEYQQGAELKW 351 L++ N E T+Y+ + Sbjct: 330 KPSLQQTAN-QEMSNTDYRVNTTVND 354 >gi|328768069|gb|EGF78116.1| hypothetical protein BATDEDRAFT_37293 [Batrachochytrium dendrobatidis JAM81] Length = 356 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 54/322 (16%), Positives = 112/322 (34%), Gaps = 32/322 (9%) Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77 + D+ +L L P+++ W+ Y + N W EV M DDL ++ L+ Sbjct: 13 DTTDEPLLKPNPRRFVLFPIQFNEIWQAYKNLEANFWSAEEVEMSDDLNGFEQ---LSRK 69 Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137 E+ ++ + L I+ + PE R + Q ++ +HS I+ Sbjct: 70 EQSLMLQITSILCMGCGLNNEAILSRYSDEIQIPEARCFFGFQLMQKNIHSELSMVILDM 129 Query: 138 LG---LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT-----KDADQEFLQDL 189 +L ++ +++PS T WA + P T + Q L+D+ Sbjct: 130 FSESEKQRDDLLDVIQQLPSRTMWTEWARTHMTRSEEPFALRVTSLAIFQAIHQVSLRDI 189 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 F E + ++ + G+ I D+ +L+F + Sbjct: 190 IAFIAGPETSTLPV------TSSESHLLHGVVHAMHKIHHDQLQYLSFLALI-------Q 236 Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-------NAPSCEQYMQFIANR 302 +L + Q M A E + + + + ++F+ + Sbjct: 237 SNLVRRADTQLVHLMARAAVAAEHTLIDDVFNLSTGNILLCGKIVPKEALKGRIEFLTDM 296 Query: 303 RCHQIGLEPLFKYTENPFPWMS 324 +G ++ + ++P PW+S Sbjct: 297 CLTTMGYPAMY-HVQDPIPWIS 317 >gi|298256099|gb|ADI71328.1| ribonucleoside diphosphate reductase beta subunit-like protein [Epizootic haematopoietic necrosis virus] Length = 202 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 15/189 (7%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 88 DVEVGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T K ++ + + L + V+ EG+ + F +L+ Sbjct: 147 EEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193 Query: 213 RANKMVGIA 221 R KM G+ Sbjct: 194 RRGKMKGMG 202 >gi|298256097|gb|ADI71327.1| ribonucleoside diphosphate reductase beta subunit-like protein [European catfish virus] gi|298256101|gb|ADI71329.1| ribonucleoside diphosphate reductase beta subunit-like protein [European sheatfish virus] Length = 202 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 15/189 (7%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HWM TE+ ++DD+ WKS +T E+ + L F Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWMETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T K ++ + + L V+ EG+ + F +L+ Sbjct: 147 EEMTDKLDFMREMDCS-------------TLPGLARSLFRAVLNEGVSLFAAFVMLLTFQ 193 Query: 213 RANKMVGIA 221 R KM G+ Sbjct: 194 RRGKMKGMG 202 >gi|298256109|gb|ADI71333.1| ribonucleoside diphosphate reductase beta subunit-like protein [Short-finned eel ranavirus] Length = 202 Score = 128 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 74/189 (39%), Gaps = 15/189 (7%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T K ++ + + L V+ EG+ + F +++ Sbjct: 147 EEMTDKLDFMREMDCS-------------TLPGLARSLFRAVLNEGVSLFAAFVMLMTFQ 193 Query: 213 RANKMVGIA 221 R KM G+ Sbjct: 194 RRGKMKGMG 202 >gi|254230294|ref|ZP_04923683.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio sp. Ex25] gi|151937191|gb|EDN56060.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio sp. Ex25] Length = 242 Score = 128 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 78/208 (37%), Gaps = 22/208 (10%) Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQD 188 +F+ E I +A Y L + + G + ++ L Sbjct: 2 VFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHVLNGETVKVSLYDLKKKLYI 61 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 + E + FY FA + M G A+ + I RDE+LHLN +IN ++ Sbjct: 62 CLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLRNG 121 Query: 249 NPHL----WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRR 303 +E +Q + EA E +A G +GLN QY+++I N R Sbjct: 122 QDDFTFMQIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITNIR 181 Query: 304 CHQIGLEPLFK-YTENPFPWMSEVIDLK 330 +GL + T NP PW++ + Sbjct: 182 MQAVGLPAAYPEATTNPIPWINAWLSSD 209 >gi|122892861|gb|ABM67449.1| NrdB [Xanthomonas campestris] gi|122892863|gb|ABM67450.1| NrdB [Xanthomonas campestris] gi|122892865|gb|ABM67451.1| NrdB [Xanthomonas campestris] gi|122892867|gb|ABM67452.1| NrdB [Xanthomonas campestris] gi|122892869|gb|ABM67453.1| NrdB [Xanthomonas campestris] gi|122892871|gb|ABM67454.1| NrdB [Xanthomonas campestris] gi|122892873|gb|ABM67455.1| NrdB [Xanthomonas campestris] gi|122892875|gb|ABM67456.1| NrdB [Xanthomonas campestris] gi|122892877|gb|ABM67457.1| NrdB [Xanthomonas campestris] gi|122892879|gb|ABM67458.1| NrdB [Xanthomonas campestris] gi|122892881|gb|ABM67459.1| NrdB [Xanthomonas campestris] gi|122892883|gb|ABM67460.1| NrdB [Xanthomonas campestris] gi|122892885|gb|ABM67461.1| NrdB [Xanthomonas campestris] gi|122892887|gb|ABM67462.1| NrdB [Xanthomonas campestris] gi|122892889|gb|ABM67463.1| NrdB [Xanthomonas campestris] gi|122892891|gb|ABM67464.1| NrdB [Xanthomonas campestris] gi|122892893|gb|ABM67465.1| NrdB [Xanthomonas campestris] gi|122892895|gb|ABM67466.1| NrdB [Xanthomonas campestris] gi|122892897|gb|ABM67467.1| NrdB [Xanthomonas campestris] gi|122892899|gb|ABM67468.1| NrdB [Xanthomonas campestris] gi|122892901|gb|ABM67469.1| NrdB [Xanthomonas campestris] gi|122892903|gb|ABM67470.1| NrdB [Xanthomonas campestris] gi|122892905|gb|ABM67471.1| NrdB [Xanthomonas campestris] gi|122892907|gb|ABM67472.1| NrdB [Xanthomonas campestris] gi|122892909|gb|ABM67473.1| NrdB [Xanthomonas campestris] gi|122892911|gb|ABM67474.1| NrdB [Xanthomonas campestris] gi|122892913|gb|ABM67475.1| NrdB [Xanthomonas campestris] gi|122892915|gb|ABM67476.1| NrdB [Xanthomonas campestris] gi|122892917|gb|ABM67477.1| NrdB [Xanthomonas campestris] gi|122892919|gb|ABM67478.1| NrdB [Xanthomonas campestris] gi|122892921|gb|ABM67479.1| NrdB [Xanthomonas campestris] gi|122892923|gb|ABM67480.1| NrdB [Xanthomonas campestris] gi|122892925|gb|ABM67481.1| NrdB [Xanthomonas campestris] gi|122892927|gb|ABM67482.1| NrdB [Xanthomonas campestris] gi|122892929|gb|ABM67483.1| NrdB [Xanthomonas campestris] gi|122892931|gb|ABM67484.1| NrdB [Xanthomonas campestris] gi|122892933|gb|ABM67485.1| NrdB [Xanthomonas campestris] gi|122892935|gb|ABM67486.1| NrdB [Xanthomonas campestris] gi|122892937|gb|ABM67487.1| NrdB [Xanthomonas campestris] Length = 175 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 14/184 (7%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P EV M+ D + N L+ E+ +G A+ +S I + ++++P Sbjct: 1 PDEVDMKGDARQY---NELSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHA 56 Query: 116 YLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 +E +H+ ++ Y++ S+ D+ +F + R P+I + + Sbjct: 57 NAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDD----- 111 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 +D E L + + EG+ FY+GFA +L R N+M G + +I RDE Sbjct: 112 ---FMRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELA 168 Query: 234 HLNF 237 H F Sbjct: 169 HSKF 172 >gi|308490921|ref|XP_003107652.1| hypothetical protein CRE_13354 [Caenorhabditis remanei] gi|308250521|gb|EFO94473.1| hypothetical protein CRE_13354 [Caenorhabditis remanei] Length = 147 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 9/138 (6%) Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272 N + + Y RDE LH +F + + ++ K Q++ ++ +A +E Sbjct: 6 GNNTISSVFRLINYFFRDEGLHRDFACLLYSMLQ-------NKLTQERIFEIIKDAVCIE 58 Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + E +P +G+N QY++F+A+ ++G + L+ +NPF +M E I + + Sbjct: 59 QEFLTEALPVDMIGMNCRLMSQYIEFVADHLLAELGCDKLYNV-KNPFDFM-ENISIDGK 116 Query: 333 KNFFETRVTEYQQGAELK 350 NFFE RV+EYQ+ + Sbjct: 117 TNFFEKRVSEYQRPGVMS 134 >gi|66802406|ref|XP_629985.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4] gi|60463390|gb|EAL61578.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4] Length = 257 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 25/200 (12%) Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 N++ PL W+ Y N W+ E+ DD W+ LT+DER L FF + Sbjct: 80 NEISPL---DIWKMYKKTLANQWVVEEIESSDDGLDWEK--KLTNDERDFFSNVLAFFVA 134 Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNM 148 S ++ N+ + PE + + Q + +HS T+ +I + D + +LFN Sbjct: 135 SCGIINKNLN-RFMSKVQIPEAKCFYNYQIHIKYLHSETYSLLIETCIKDKNIKDKLFNA 193 Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208 +P + KA WAL++ E + V V FE ++F F I Sbjct: 194 IETIPCVKKKAEWALKWIN----------------ESFEKRLVALVAFESIFFSGSFRII 237 Query: 209 LSLGRANKMVGIAEQYQYIM 228 L + + M G+ + I Sbjct: 238 SLLKKRSLMQGLTFSNELIN 257 >gi|298256095|gb|ADI71326.1| ribonucleoside diphosphate reductase beta subunit-like protein [Cod iridovirus/15/04.11.92/DNK] gi|298256103|gb|ADI71330.1| ribonucleoside diphosphate reductase beta subunit-like protein [Pike-perch iridovirus] Length = 202 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 15/189 (7%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T K ++ + + L + V+ EG+ + F +L+ Sbjct: 147 EEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193 Query: 213 RANKMVGIA 221 R+ KM G+ Sbjct: 194 RSGKMKGMG 202 >gi|298256093|gb|ADI71325.1| ribonucleoside diphosphate reductase beta subunit-like protein [Bohle iridovirus] Length = 202 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 15/189 (7%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T K ++ + + L + V+ EG+ + F +L+ Sbjct: 147 GEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193 Query: 213 RANKMVGIA 221 R+ KM G+ Sbjct: 194 RSGKMKGMG 202 >gi|213864815|ref|ZP_03386934.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 170 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 20/179 (11%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYR 150 +++ ++ P L +F EAVH+ ++ I ++L + + Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126 Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 E P + KA L + E L+ V E FY+GF + Sbjct: 127 ENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESFLFYSGFWLPM 170 >gi|213585578|ref|ZP_03367404.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 189 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 20/189 (10%) Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 S PE ++ AF E +HS ++ +II ++ D +F+ I +A Y Sbjct: 1 SIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDE 60 Query: 169 LSSPS-----FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 L + GT + ++ L + E + FY FA + Sbjct: 61 LIEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFA 120 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEA 268 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A Sbjct: 121 ERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQA 180 Query: 269 TLLEIAYAH 277 E +A Sbjct: 181 AQQEKEWAD 189 >gi|298256105|gb|ADI71331.1| ribonucleoside diphosphate reductase beta subunit-like protein [Ranavirus maxima/9995205/DNK] Length = 202 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 15/189 (7%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T K ++ + + L + V+ EG+ + F +L+ Sbjct: 147 EEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193 Query: 213 RANKMVGIA 221 R+ KM G+ Sbjct: 194 RSGKMKGMG 202 >gi|289810170|ref|ZP_06540799.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 215 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 23/225 (10%) Query: 131 FQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 + I ++L + + E P + KA L + E L+ Sbjct: 1 YSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILAHY--------------VSDEPLKK 46 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V E FY+GF + K+ A+ + I+RDE++H + + Sbjct: 47 KI-ASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQK 105 Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 + +E + + +L E EI Y + G + ++ + AN+ +G Sbjct: 106 LSAIEREELKLFALDLLMELYDNEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLG 162 Query: 309 LEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 E LF NP + + + +FF + Y G ++ Sbjct: 163 YEALFPPEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVE 207 >gi|221309910|ref|ZP_03591757.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|221314233|ref|ZP_03596038.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319156|ref|ZP_03600450.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. JH642] gi|221323429|ref|ZP_03604723.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. SMY] Length = 195 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 15/187 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F + + KA Sbjct: 78 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKKART 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + +T+ K D+ L V V E FY+GF L K++ Sbjct: 138 IVSVYKTI---------KKNDEISLFKGMVASVFLESFLFYSGFYYPLYFYGQGKLMQSG 188 Query: 222 EQYQYIM 228 E I+ Sbjct: 189 EIINLII 195 >gi|298256107|gb|ADI71332.1| ribonucleoside diphosphate reductase beta subunit-like protein [Rana esculenta virus] Length = 202 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 15/189 (7%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 P +Y WA HW+ TE+ ++DD+ WKS +T E+ + L F Sbjct: 29 CFKPFRYAWAEAIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + V + + + E R L A EA+H + + +LG+ + E + + + Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T K ++ + + L + V+ EG+ + F +L+ Sbjct: 147 EEMTDKLDFMREMDCS-------------TLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193 Query: 213 RANKMVGIA 221 R+ KM G+ Sbjct: 194 RSGKMKGMG 202 >gi|322499081|emb|CBZ34153.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 269 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 8/119 (6%) Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291 LH +F + N H+ K +++ ++ +A +E + + +P +G+NA Sbjct: 145 GLHTDFACLLYN------SHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAEL 198 Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 QY++F+A+R +G E ++ T+ PF +M E+I L+ + NFFE +V EYQ+ + Sbjct: 199 MAQYIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 255 >gi|301629349|ref|XP_002943805.1| PREDICTED: ribonucleoside-diphosphate reductase subunit beta-like, partial [Xenopus (Silurana) tropicalis] Length = 120 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 55/92 (59%), Positives = 72/92 (78%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67 S + ++RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+AL Sbjct: 29 SAAASQQRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIAL 88 Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 WK NGLT+DER +++RNLGFF +++SL ANN Sbjct: 89 WKDPNGLTEDERRIVRRNLGFFTTADSLAANN 120 >gi|297520407|ref|ZP_06938793.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli OP50] Length = 225 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 3/163 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 23 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 81 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 82 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 139 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + +II ++ D +F+ I +A Y L + Sbjct: 140 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 182 >gi|328553048|gb|AEB23540.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus amyloliquefaciens TA208] Length = 195 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 65/187 (34%), Gaps = 15/187 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161 H+ + + L A E VH+ ++ I +L E E+F + + KA Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEKINEVFEWVKNNRFLQKKART 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221 + + + D L V V E FY+GF L K++ Sbjct: 138 IVLIYKAVQK---------NDDISLFKAMVASVFLESFLFYSGFYYPLYFYGQGKLMQSG 188 Query: 222 EQYQYIM 228 E I+ Sbjct: 189 EIINLII 195 >gi|269975299|gb|ACZ55523.1| ribonucleoside diphosphate reductase beta chain [Staphylococcus phage SA1] Length = 357 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 64/338 (18%), Positives = 125/338 (36%), Gaps = 23/338 (6%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 L L Y +E Y W E P + ++S ++ Sbjct: 8 FLGGERKTFDSLNKHYPKIFELYKQQKAQDWSEDEFPFEQSRLDFESVPA---SMSGVML 64 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L + +++ VA ++ A +S+ +++Q+ E +H+ T+ I+ + Sbjct: 65 EILKWQWEADTQVAKSLAFAFAPFISDDIYATAIMKQSEIENLHALTYSEIVRQCIKNPE 124 Query: 144 ELFNMYREVPSITAKA-----------NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 + + + ++ + + + Y + S + + Sbjct: 125 TILDEINQNIAVQDRLKTVNRVLEELLDEGINYRLSYVRDSLLDKDPLHFHKVILKGLFA 184 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 EG+ F FA +L +K GIA+ Q IM DE LH I+V+ + + Sbjct: 185 VTALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKETLRD--DE 242 Query: 253 WTKEFQQ---KSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQI 307 W K FQQ + + +L E E +++ +G VGLN +++ + A Sbjct: 243 WQKAFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYNAAPLYDMF 302 Query: 308 GLEPLF-KYTENPFPWMSEVIDLKKEKNF-FETRVTEY 343 G+ F E P +M + +++ KE+N E + Y Sbjct: 303 GIPRDFVAPKEPPLKYMIKKMEIDKEQNANQEQQNGAY 340 >gi|33340378|gb|AAQ14729.1|AF320576_197 putative ribonucleoside diphosphate reductase beta chain [Enterobacteria phage Felix 01] Length = 377 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 123/323 (38%), Gaps = 23/323 (7%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 Y +E Y W E P + ++S ++ L + +++ VA Sbjct: 43 YPKIFELYKQQKAQDWSEDEFPFEQSRLDFESVPA---SMSGVMLEILKWQWEADTQVAK 99 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 ++ A +S+ +++Q+ E +H+ T+ I+ + + + + ++ + Sbjct: 100 SLAFAFAPFISDDIYATAIMKQSEIENLHALTYSEIVRQCIKNPETILDEINQNVAVQDR 159 Query: 159 A-----------NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + + Y + S + + EG+ F FA Sbjct: 160 LKTVNRVLEELLDEGINYRLSYVRDSLLDKDPLHFHKVILKGLFAVTALEGISFMASFAC 219 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ---KSRTM 264 +L +K GIA+ Q IM DE LH I+V+ + + W K FQQ + + + Sbjct: 220 TFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKETLRD--DEWQKAFQQILPEIKVI 277 Query: 265 LHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFP 321 L E E +++ +G VGLN +++ + A G+ F E P Sbjct: 278 LDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYNAAPLYDMFGIPRDFVAPKEPPLK 337 Query: 322 WMSEVIDLKKEKNF-FETRVTEY 343 +M + +++ KE+N E + Y Sbjct: 338 YMIKKMEIDKEQNANQEQQNGAY 360 >gi|45268714|dbj|BAD12266.1| p53-inducible ribonucleotide reductase small subunit 2 short form gamma [Homo sapiens] Length = 139 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 9/120 (7%) Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE LH +F + L K +++ R ++ +A +E + E +P G +G+N Sbjct: 15 DEGLHCDFACLMFQY-------LVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNC 67 Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 68 ILMKQYIEFVADRLLVELGFSKVFQ-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 125 >gi|333001770|gb|EGK21336.1| ribonucleoside-diphosphate reductase 1 subunit beta domain protein [Shigella flexneri K-218] Length = 197 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 3/163 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + +II ++ D +F+ I +A Y L + Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165 >gi|38707874|ref|NP_944994.1| Ribonucleoside triphosphate reductase, beta chain [Enterobacteria phage Felix 01] gi|238801854|ref|YP_002922904.1| ribonucleoside triphosphate reductase, beta chain [Enterobacteria phage WV8] gi|33340477|gb|AAQ14828.1| putative ribonucleoside diphosphate reductase beta chain [Enterobacteria phage Felix 01] gi|216263067|gb|ACJ71935.1| ribonucleoside triphosphate reductase, beta chain [Enterobacteria phage WV8] Length = 357 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 64/338 (18%), Positives = 125/338 (36%), Gaps = 23/338 (6%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 L L Y +E Y W E P + ++S ++ Sbjct: 8 FLGGERKTFDSLNKHYPKIFELYKQQKAQDWSEDEFPFEQSRLDFESVPA---SMSGVML 64 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143 L + +++ VA ++ A +S+ +++Q+ E +H+ T+ I+ + Sbjct: 65 EILKWQWEADTQVAKSLAFAFAPFISDDIYATAIMKQSEIENLHALTYSEIVRQCIKNPE 124 Query: 144 ELFNMYREVPSITAKA-----------NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192 + + + ++ + + + Y + S + + Sbjct: 125 TILDEINQNVAVQDRLKTVNRVLEELLDEGINYRLSYVRDSLLDKDPLHFHKVILKGLFA 184 Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 EG+ F FA +L +K GIA+ Q IM DE LH I+V+ + + Sbjct: 185 VTALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKETLRD--DE 242 Query: 253 WTKEFQQ---KSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQI 307 W K FQQ + + +L E E +++ +G VGLN +++ + A Sbjct: 243 WQKAFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYNAAPLYDMF 302 Query: 308 GLEPLF-KYTENPFPWMSEVIDLKKEKNF-FETRVTEY 343 G+ F E P +M + +++ KE+N E + Y Sbjct: 303 GIPRDFVAPKEPPLKYMIKKMEIDKEQNANQEQQNGAY 340 >gi|221055321|ref|XP_002258799.1| Ribonucleotide reductase small subunit [Plasmodium knowlesi strain H] gi|193808869|emb|CAQ39572.1| Ribonucleotide reductase small subunit,putative [Plasmodium knowlesi strain H] Length = 335 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 49/309 (15%), Positives = 104/309 (33%), Gaps = 27/309 (8%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++ +L + P+KY W Y + W + D K + + Sbjct: 17 NNDDILKENQFRWVMFPIKYKTFWSYYKEVESLFWTAEDYNFDKDK---KFLESIDKNML 73 Query: 80 LMIKRNLGFFASSESLV---ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 + + + F++ + V I + + PE R + Q E +H + I Sbjct: 74 VKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYACIFE 133 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 + D + + N +Q L + T + + F L + Y+ Sbjct: 134 TYIPDAKQKRTII----------NKVIQLDSVLKKQKWLTELFETNIPFYNKLVLIYISK 183 Query: 197 EGMWFYTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 + F ++ + + + ++ I RDE LH +F + N HL K Sbjct: 184 --VLFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCN-------HLNNK 234 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 ++ A LE +A E + + + + +++++A+ + F Sbjct: 235 LKYERLLDYFKMAVKLEYQFAIEMLDLSVLKIKKEQVKSFLEYLADTMLVNLKHPKYFN- 293 Query: 316 TENPFPWMS 324 ++ PF W Sbjct: 294 SKYPFTWPE 302 >gi|323945044|gb|EGB41109.1| nrdB protein [Escherichia coli H120] Length = 197 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 3/163 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS + Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122 Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + +II ++ D +F+ I +A Y L + Sbjct: 123 YTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMT 165 >gi|82793227|ref|XP_727957.1| ribonucleotide reductase [Plasmodium yoelii yoelii str. 17XNL] gi|23484058|gb|EAA19522.1| ribonucleotide reductase, putative [Plasmodium yoelii yoelii] Length = 373 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 102/303 (33%), Gaps = 21/303 (6%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 + +L + P+KY W Y + W + D S + T + L Sbjct: 18 NDEILKENQFRWVMFPIKYKTFWNYYKEIESLFWTAEDHNFDKDKPFLNSMDKTTLSKLL 77 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 + I + + PE R + Q E +H+ + I S L Sbjct: 78 ELFCFYSLKDLHLRDEQAIITSKLLDIIQIPEGRAFYGFQMCMENIHNEVYACIFESYSL 137 Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 D + + + L+Y ++ +A+ F L + Y+ + Sbjct: 138 DSKQKKEII----------DKVLKYESVFKKQNWLYNEFEANIPFYNKLILLYISK--VL 185 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQY-IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 F GF+ + S + N ++ I RDE L +F + N HL K + Sbjct: 186 FNGGFSILASYCKENNILSSFTGVHAKIQRDEYLQGDFSVMCCN-------HLNNKLRYE 238 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319 A LE + + + F+ + +Q++Q++A+ + + ++ P Sbjct: 239 NVLNYFKAAVELEYNFCVDMLDFDFLKITKDQVKQFLQYLADTMLLNLKYPKHYN-SKYP 297 Query: 320 FPW 322 F W Sbjct: 298 FAW 300 >gi|156096873|ref|XP_001614470.1| ribonucleotide reductase small subunit [Plasmodium vivax SaI-1] gi|148803344|gb|EDL44743.1| ribonucleotide reductase small subunit, putative [Plasmodium vivax] Length = 335 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 48/309 (15%), Positives = 103/309 (33%), Gaps = 27/309 (8%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++ +L + P+KY W Y + W + D K + + Sbjct: 17 NNDDILKENQFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKDK---KFLESIDKNML 73 Query: 80 LMIKRNLGFFASSESLV---ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 + + + F++ + V I + + PE R + Q E +H + I Sbjct: 74 VKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYACIFE 133 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 + D + + N +Q L + T + + F L + Y+ Sbjct: 134 TYIPDAKQKRVII----------NKVIQLDSVLKKQKWLTELFETNIPFYNKLVLIYISK 183 Query: 197 EGMWFYTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 + F ++ + + + ++ I RDE LH +F + N HL K Sbjct: 184 --VLFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCN-------HLNNK 234 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + A LE ++ E + + + + +++++A+ + F Sbjct: 235 LKYESLLDYFKMAVELEYQFSMEMLELSVLKIKKEQVKSFLEYLADTMLVNLKHPKYFN- 293 Query: 316 TENPFPWMS 324 ++ PF W Sbjct: 294 SKYPFTWPE 302 >gi|32709427|gb|AAP86732.1| NrdB [Enterobacteria phage RB3] Length = 258 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 81/228 (35%), Gaps = 32/228 (14%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFTTGT----------------------------KDADQEFLQDL 189 +A +Y + + K A + L Sbjct: 149 RAESIGRYYDDVLIKTREWENAKEFVELAKESPDADFRLNRAIKQEAEAKRALMKSLYLC 208 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLN 236 E + FY FA + + M G A+ ++I RDE LHL Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDEQLHLK 256 >gi|13274105|emb|CAC33823.1| ribonucleotide reductase beta-subunit [Corynebacterium glutamicum] Length = 201 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 83/218 (38%), Gaps = 26/218 (11%) Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 + F E ++ KA L Y + D + + V+ E FY Sbjct: 1 NDAFRWSEENENLQRKAKIILSYY-------------EGDDPLKRKI--ASVILESFLFY 45 Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262 +GF + +K+ A+ + I+RDE++H + + + +E ++ + Sbjct: 46 SGFYLPMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTF 105 Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319 +L++ E Y+ + +G ++++++ AN+ + +G E LF E +P Sbjct: 106 DLLYDLYDNETQYSEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETKVSP 162 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352 + + + +FF + Y G WD Sbjct: 163 NILSALSPNADENHDFFSGSGSSYVIGKAENTEDDDWD 200 >gi|281181724|dbj|BAI58041.1| putative ribonucleoside-diphosphate reductase [Edwardsiella tarda] Length = 169 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 16/164 (9%) Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147 + +S+ + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ Sbjct: 3 YQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVTDPSLVFD 62 Query: 148 MYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD-----------QEFLQDLFV 191 I +A Y L + GT + ++ L + Sbjct: 63 DIVSNEEILKRARDISAYYDDLIETTGYYHLLGEGTHQINGKPVTVSLRELKKKLYLCLM 122 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 E + FY FA + M G A+ + I RDE+LHL Sbjct: 123 SVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 166 >gi|225619347|ref|YP_002720573.1| ribonucleoside-diphosphate reductase subunit beta [Brachyspira hyodysenteriae WA1] gi|225214166|gb|ACN82900.1| ribonucleoside-diphosphate reductase, beta subunit [Brachyspira hyodysenteriae WA1] Length = 356 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 63/324 (19%), Positives = 128/324 (39%), Gaps = 18/324 (5%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 + A + ++ N W EV + D + S L +D + K N+ + +S V + Sbjct: 31 HEVARKLKEASEGNTWFSKEVDYKSDKTRFSS---LPEDAQRAFKLNIAYQTLMDSGVTS 87 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY-IITSLGLDEGELFNMYREVPSITA 157 + R +++ R A EE +H+ ++ Y + G + + ++ + Sbjct: 88 GFSSILNRIVTSSIWSILYARIAIEENIHAESYSYGLSEVFGHEATDTLDLVYNDEFVKH 147 Query: 158 KAN---WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + L + + T D ++ + L + + E + F F ++ Sbjct: 148 RMEKEVELFGNVDELCNLENSPATLDEKKQAVLKLLIGIYLLESVKFPFSFLVTFTINNN 207 Query: 215 --NKMVGIAEQYQYIMRDES-LHLNFGIDVINQIKIENPHLWTKEFQ-----QKSRTMLH 266 N + G + + I DE H+ G +V+N ++ EN +T F+ + +R M Sbjct: 208 YDNAIAGFTKTIKLIAHDELNTHVPTGKNVMNILRKENEQGFTHLFKSGWFNETARAMAE 267 Query: 267 EATLLEIAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMS 324 EI +A G+N+ E ++++ A R +G+E + + + W + Sbjct: 268 FTVNEEIKWAKYLFDGYQVAGINSSVSEHFIKYWAGVRLRDLGVESPYNEKKSDVIDWFN 327 Query: 325 EVIDLKKE-KNFFETRVTEYQQGA 347 D+ K+ ET T YQ+GA Sbjct: 328 SYRDINKQNAALQETTNTSYQKGA 351 >gi|258597037|ref|XP_001347439.2| ribonucleotide reductase small subunit, putative [Plasmodium falciparum 3D7] gi|254922415|gb|AAN35352.2| ribonucleotide reductase small subunit, putative [Plasmodium falciparum 3D7] Length = 335 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 101/309 (32%), Gaps = 27/309 (8%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++ +L + P+KY W Y + W + D + + Sbjct: 17 NNDEILKENKFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKDKQ---YLENIDKNML 73 Query: 80 LMIKRNLGFFASSESLV---ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 + + + F++ + V I + + PE R + Q E +H + I Sbjct: 74 VKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYACIFE 133 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 + D + + N ++ L + T +++ + L + Y+ Sbjct: 134 TYIPDSKQKRVII----------NKVIELDSVLKKQKWLTEIFESNIPYYNKLVLLYISK 183 Query: 197 EGMWFYTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 + F ++ + + + ++ I RDE LH +F + N HL K Sbjct: 184 --VLFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCN-------HLVNK 234 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + A LE ++ E + + + +++++ + + + Sbjct: 235 LKYEHVLDYFKMAVDLEYQFSLEMLELNVLKIKKEQVRAFLEYLTDTMLTNLKYPKHYN- 293 Query: 316 TENPFPWMS 324 ++ PF W Sbjct: 294 SKYPFSWPE 302 >gi|55978391|ref|YP_145447.1| ribonucleoside-diphosphate reductase, beta subunit [Thermus thermophilus HB8] gi|55773564|dbj|BAD72004.1| ribonucleoside-diphosphate reductase, beta subunit [Thermus thermophilus HB8] Length = 294 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 112/296 (37%), Gaps = 18/296 (6%) Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114 M TE Q DL + ER +++R L A E V +Y PE Sbjct: 1 MHTEFSFQSDLQD---HALADEKERSLVERALLAIAQVELAV-KLFWARVYDRFPKPEIA 56 Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 + L A E H++ + + L E F E S AL+ + Sbjct: 57 EVGLTFAESEVRHANAYAH--LLELLGLEEAFGQALEGAS-------ALRDRAQALGEAL 107 Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESL 233 +E+ LF+F E + ++ F +++L R + GI+ + ++E++ Sbjct: 108 RRAQGKDLREYALALFLFSAFTEHVSLFSQFYVLMALNRRGNRYKGISNAIEATSKEENV 167 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292 H FG++++ ++ E+P + FQ+++ + E A G + Sbjct: 168 HGLFGVELLRLLRTEHPEALGEGFQEEALRLAQGLFRAEEALLDWLFSAGEPALVGHRET 227 Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQ 345 ++++ N+ GL P+F E W + + KE +FF R Y + Sbjct: 228 LEFLKGRYNQVLALHGLPPVFSVDEKALRDTEWFTLELLADKEVDFFNKRSVAYAR 283 >gi|297521777|ref|ZP_06940163.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli OP50] Length = 174 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 9/167 (5%) Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL 252 E + FY FA + M G A+ + I RDE+LHL ++N ++ ++P + Sbjct: 1 ALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEM 60 Query: 253 --WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGL 309 +E +Q+ + +A E +A G +GLN QY+++I N R +GL Sbjct: 61 AEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGL 120 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 + F+ NP PW++ + + E V+ Y Q AE+ D Sbjct: 121 DLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTD 167 >gi|323945045|gb|EGB41110.1| nrdB protein [Escherichia coli H120] gi|333002093|gb|EGK21659.1| ribonucleoside-diphosphate reductase 1 subunit beta domain protein [Shigella flexneri K-218] Length = 178 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 9/167 (5%) Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL 252 E + FY FA + M G A+ + I RDE+LHL ++N ++ ++P + Sbjct: 5 ALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEM 64 Query: 253 --WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGL 309 +E +Q+ + +A E +A G +GLN QY+++I N R +GL Sbjct: 65 AEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGL 124 Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQGAELKWD 352 + F+ NP PW++ + + E V+ Y Q AE+ D Sbjct: 125 DLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTD 171 >gi|238594383|ref|XP_002393469.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553] gi|215460986|gb|EEB94399.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553] Length = 184 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 2/111 (1%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 G+ + ++ +L L P++Y W+ Y A + W E+ + DL W Sbjct: 76 FVGDIELPESEEPLLKESKRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWN- 134 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 N + D+ER I L FFA+S+ +V N+V + E R + Q Sbjct: 135 -NRMNDNERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQI 184 >gi|66394974|ref|YP_240948.1| ORF025 [Staphylococcus phage G1] gi|62636996|gb|AAX92107.1| ORF025 [Staphylococcus phage G1] Length = 265 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 15/249 (6%) Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANWAL 163 H P+ + E +H+ ++ +I T+L ++ + E + KA + Sbjct: 7 HEPRPKYQAVFAFMGGMEEIHAKSYSHIFTTLLSNKETSYLLDTWVEENDFLKVKAQFIG 66 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 Y L P+ T + V E FY+GF L L +M Sbjct: 67 YYYDQLLKPNPTIFDR-------YMAKVASAFLESALFYSGFYYPLLLAGRGQMTQSGAI 119 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 I +DE+ H + K+ +++ +L E+AY H Sbjct: 120 IYKITQDEAYHGSAVGLTAQYDYNLLTEEEKKQADKETYELLDILYTNEVAYTHSLYDPL 179 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTE 342 + Y+Q+ NR +G E F NP +D + +FF + + Sbjct: 180 ELS---EDVINYVQYNFNRALQNLGREDYFNPEPYNPIVENQTNVDRLRNVDFFSGK-AD 235 Query: 343 YQQGAELKW 351 Y++ +K Sbjct: 236 YEKSTNIKD 244 >gi|50404173|gb|AAT76849.1| ribonucleotide reductase small subunit [Plasmodium falciparum] Length = 324 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 97/306 (31%), Gaps = 32/306 (10%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 ++ +L + P+KY W Y + W + D ++ Sbjct: 17 NNDEILKENKFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKDKQYLEN--------- 67 Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 I +N+ I + + PE R + Q E +H + I + Sbjct: 68 --IDKNMLVKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYACIFETYI 125 Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 D + + N ++ L + T +++ + L + Y+ + Sbjct: 126 PDSKQKRVII----------NKVIELDSVLKKQKWLTEIFESNIPYYNKLVLLYISK--V 173 Query: 200 WFYTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 F ++ + + + ++ I RDE LH +F + N HL K Sbjct: 174 LFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCN-------HLVNKLKY 226 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + A LE ++ E + + + +++++ + + + ++ Sbjct: 227 EHVLDYFKMAVDLEYQFSLEMLELNVLKIKKEQVRAFLEYLTDTMLTNLKYPKHYN-SKY 285 Query: 319 PFPWMS 324 PF W Sbjct: 286 PFSWPE 291 >gi|256111767|ref|ZP_05452742.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 3 str. Ether] Length = 190 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 64/185 (34%), Gaps = 8/185 (4%) Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227 + AD + + V E FY+GF + K+ A+ + I Sbjct: 2 LQRKSTLILDQYHADDPLKKKI--ASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLI 59 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 +RDE++H + + +E + + +L E E+ Y + Sbjct: 60 IRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLELYDNEVRYTEALYDGVGL-- 117 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ 344 ++++ + AN+ +G E LF NP + + + +FF + Y Sbjct: 118 -TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSPNADENHDFFSGSGSSYV 176 Query: 345 QGAEL 349 G + Sbjct: 177 IGKAV 181 >gi|265993236|ref|ZP_06105793.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 3 str. Ether] gi|262764106|gb|EEZ10138.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 3 str. Ether] Length = 189 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 64/184 (34%), Gaps = 8/184 (4%) Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228 + AD + + V E FY+GF + K+ A+ + I+ Sbjct: 2 QRKSTLILDQYHADDPLKKKI--ASVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLII 59 Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 RDE++H + + +E + + +L E E+ Y + Sbjct: 60 RDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLELYDNEVRYTEALYDGVGL--- 116 Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ++++ + AN+ +G E LF NP + + + +FF + Y Sbjct: 117 TEDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSPNADENHDFFSGSGSSYVI 176 Query: 346 GAEL 349 G + Sbjct: 177 GKAV 180 >gi|113951998|gb|AAP86736.2| NrdB [Enterobacteria phage T6] Length = 247 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 78/219 (35%), Gaps = 28/219 (12%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELIEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLFADPSKVFDEILLDEAIMK 148 Query: 158 KANWALQYTQT------------------------LSSPSFTTGTKDADQEFLQDLFVFY 193 +A +Y L+ K + L Sbjct: 149 RAESIGKYYDDVLLKTRAWENAKDMVKYYKDQGLILADKDVEQRAKRDLMKSLYLCLHVI 208 Query: 194 VVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDE 231 E + FY FA + + M G A+ ++I RDE Sbjct: 209 NALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDE 247 >gi|328958551|ref|YP_004375937.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] gi|328674875|gb|AEB30921.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium sp. 17-4] Length = 328 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 102/287 (35%), Gaps = 22/287 (7%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ WEK S W+ T +P+ ++ + W+ L ++ER + + L Sbjct: 19 NWNEIEDSLDHSTWEKLTSL---FWLDTRIPVTNEKSQWED---LPENERKVFLKTLAGL 72 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 AS + + + I + F E+VH+ + I+ + Sbjct: 73 ASVATFQSERGFMVIEEGEHTQQEAAIYNNIQFIESVHAKAYNTILIGFNEPKE------ 126 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 + I A N L+Y + TGT + V ++ EG+ Y+G L Sbjct: 127 VDDILIWADNNIELKYRLDRILEVYKTGTTLQKR-------VANLILEGVLTYSGLFTPL 179 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 + +AE + ++ +ESLH + E E + + + + Sbjct: 180 LYWTQKRFTSVAEIIKLVLTNESLHCFYISHKFQLGFSELSQQEQTELRDWTFDLFVDLV 239 Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 E+ Y + + + +++ AN +G + ++ + Sbjct: 240 NNELNYIEQIYYR---TDWLEEVKDFIRQQANNALKSLGFDTIYPES 283 >gi|323167150|gb|EFZ52868.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella sonnei 53G] Length = 177 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 8/140 (5%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W +N W+P +VP+ +D+ W++ LT E+ + R Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147 ++L ++ P L +F EAVH+ ++ I ++L D + Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123 Query: 148 MYREVPSITAKANWALQYTQ 167 E + KA Q+ + Sbjct: 124 WSEENAPLQRKAQIIQQHYR 143 >gi|269864962|ref|XP_002651756.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|269866721|ref|XP_002652369.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220062645|gb|EED41686.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063933|gb|EED42300.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 135 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 11/130 (8%) Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 M G+ + I RDE LH +F + I + ++ EA +E + Sbjct: 1 MPGLTFSNELISRDEGLHTDFACLLHKYINNKCT---------VIEDIVREAVAIEQEFL 51 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336 E++P +G+N QY++F+A+R +G + ++ + NPF +M E I L+ + NFF Sbjct: 52 SESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFF 109 Query: 337 ETRVTEYQQG 346 E R YQ+G Sbjct: 110 ERREANYQKG 119 >gi|213612975|ref|ZP_03370801.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 205 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 21/214 (9%) Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 + + E P + KA L + E L+ V E Sbjct: 2 KEVDAAYAWSEENPPLQRKAQIILAHY--------------VSDEPLKKKI-ASVFLESF 46 Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259 FY+GF + K+ A+ + I+RDE++H + + + +E + Sbjct: 47 LFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKL 106 Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YT 316 + +L E EI Y + G + ++ + AN+ +G E LF Sbjct: 107 FALDLLMELYDNEICYTEALYAE--TGW-VNDVKAFLCYNANKALMNLGYEALFPPEMAD 163 Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NP + + + +FF + Y G ++ Sbjct: 164 VNPAILAALSPNADENHDFFSGSGSSYVMGKTVE 197 >gi|153819185|ref|ZP_01971852.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio cholerae NCTC 8457] gi|126510271|gb|EAZ72865.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio cholerae NCTC 8457] Length = 171 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 6/138 (4%) Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL----WT 254 + FY FA + M G A+ + I RDE+LHL ++N ++ Sbjct: 1 IRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVA 60 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 +E +Q+S + EA E +A G +GLN QY+++I N R +GLEP + Sbjct: 61 EECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAY 120 Query: 314 K-YTENPFPWMSEVIDLK 330 T NP PW++ + Sbjct: 121 PAATNNPIPWINAWLSSD 138 >gi|90018206|gb|ABD83916.1| ribonucleotide reductase M2 polypeptide [Ictalurus punctatus] Length = 139 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 23/159 (14%) Query: 139 GLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195 D E FN +P + KA+WAL + G KDA + V + Sbjct: 1 IKDPKEREFLFNAVETLPCVKKKADWALNWI----------GNKDA---QFGERVVAFAA 47 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG++F FA I L + M G+ + I RDE LH +F + HL K Sbjct: 48 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK-------HLVNK 100 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 + ++++ A +E + + +P +G+N +Q Sbjct: 101 PSEATVKSIIVNAVQIEQEFLTQALPVKLIGMNCDLMKQ 139 >gi|113951985|gb|AAP86733.2| NrdB [Enterobacteria phage RB61] Length = 251 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 79/223 (35%), Gaps = 32/223 (14%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMK 148 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF----------------------------LQDL 189 +A +Y + + AD E+ L Sbjct: 149 RAESIGRYYDDVIEKTRYWQNAKADIEYQKEINADEDDIKDAIEHEMYWKRELMRSLYLC 208 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDE 231 E + FY FA + + M G A+ ++I RDE Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDE 251 >gi|167948644|ref|ZP_02535718.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 124 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 54/127 (42%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285 YIMRDE LH +FGI V QI +E Q R M E E AYA + + Sbjct: 1 YIMRDEVLHASFGIRVAKQIMLEEN---IAPDPQAIREMWDECEAAEDAYAGYILRDPIL 57 Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 G + +++ANRR QIGL + E PW+ E +L+KEKNFFET VTEYQ Sbjct: 58 GYSKDDHMGQFRYVANRRARQIGLSEPYPGAEATLPWLDEQANLRKEKNFFETTVTEYQT 117 Query: 346 GAELKWD 352 G L WD Sbjct: 118 GGALNWD 124 >gi|113951975|gb|AAP86729.2| NrdB [Enterobacteria phage RB23] Length = 251 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 79/223 (35%), Gaps = 32/223 (14%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHKVFEDLTEKQLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF----------------------------LQDL 189 +A +Y + + AD E+ L Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLC 208 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDE 231 E + FY FA + + M G A+ ++I RDE Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDE 251 >gi|300870141|ref|YP_003785012.1| ribonucleotide-diphosphate reductase subunit beta [Brachyspira pilosicoli 95/1000] gi|300687840|gb|ADK30511.1| ribonucleotide-diphosphate reductase beta subunit [Brachyspira pilosicoli 95/1000] Length = 359 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 65/351 (18%), Positives = 137/351 (39%), Gaps = 20/351 (5%) Query: 14 EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72 EK+ N++++R+ ++ + + A + ++ N W EV + D + S Sbjct: 7 EKKPNLENERIFFGDFGHYIRIDSVSHEIARKLKEASEGNTWFSKEVDYKSDKTRFSS-- 64 Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 L +D + K N+ + +S V + + R +++ R A EE +H+ ++ Sbjct: 65 -LPEDAQRAFKLNIAYQTLMDSGVTSGFSSILNRIVTSSIWSILYSRIAIEEVIHAESYS 123 Query: 133 YIITS----LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 Y ++ L + +L V K L + + T + ++ + Sbjct: 124 YGLSEVFGHLATETLDLVYNDEFVKHRMEKEVELFSCVDDLCNIENSNATLEEKKKAVLK 183 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGR--ANKMVGIAEQYQYIMRDES-LHLNFGIDVINQI 245 L + E + F F ++ + + G + + I DE H+ G +VI + Sbjct: 184 LLTGIYLLESVKFPFSFLVTFTINNSYNDAITGFTKTIKLIAHDELNTHVPTGKNVIGIL 243 Query: 246 KIENPHLWTKEFQ-----QKSRTMLHEATLLEIAYAHETMP-KGFVGLNAPSCEQYMQFI 299 + + + + F ++ M EI +A K G+N+ E ++++ Sbjct: 244 RKDANQGFKELFDSGWYNDMAKEMTEFTVNEEIKWAKYLFDGKEVSGINSSVSEHFIKYW 303 Query: 300 ANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGA 347 A R +G+E + + + W + D+ K+ ET T YQ+GA Sbjct: 304 AGVRLKDLGVETEYLKEPKSDIIDWFNAYRDINKQNAALQETTNTSYQKGA 354 >gi|113951972|gb|AAP86728.2| NrdB [Enterobacteria phage RB14] Length = 251 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 80/223 (35%), Gaps = 32/223 (14%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELTEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMK 148 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEF----------------------------LQDL 189 +A +Y + + AD E+ L Sbjct: 149 RAESIGRYYDDVLIKTRYWENAKADIEYQKEINADEDVIEDAIEHETYWKRELMKSLYLC 208 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDE 231 E + FY FA + + M G A+ ++I RDE Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFIARDE 251 >gi|148688625|gb|EDL20572.1| mCG1032193 [Mus musculus] Length = 150 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 20/145 (13%) Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 +P + KA+WAL++ + + V + EG++F FA IL L Sbjct: 1 MPCVKKKADWALRWI-------------GDKEAAYGERVVAFAAVEGIFFSGSFASILWL 47 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 + M G+ + I RDE LH +F + HL K +Q+ + ++ A + Sbjct: 48 KKRGLMPGLTFSNELISRDEGLHWDFACLMFK-------HLAHKPSEQRVKEIITTAVRI 100 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYM 296 E + E +P +G++ +QY+ Sbjct: 101 EQEFLTEALPVKLIGMSCTLMKQYI 125 >gi|157310978|ref|YP_001468974.1| putative ribonucleotide reductase [Corynebacterium phage P1201] gi|95832126|gb|ABF57526.1| putative ribonucleotide reductase [Corynebacterium phage P1201] Length = 237 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 82/237 (34%), Gaps = 18/237 (7%) Query: 117 LLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 + + F E VH+ ++ + ++L D F N A Q + + ++ Sbjct: 1 MKQIGFMEEVHAKSYSSVFSTLFGSEDIDGAFAWVEN--------NKATQVKKLVFDEAY 52 Query: 175 TTGTKDADQEFLQDLFV--FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 + + + V+ E FYTGF L K+ A+ + IMRDE Sbjct: 53 DISDYNDRRVEYYGAIIRASSVLLESFLFYTGFYLPLHFASQGKLTNTADLIRLIMRDEG 112 Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292 +H + ++ +++ + + EI E + Sbjct: 113 VHGYYLGYKFQKVMEGALPYERDAVKERVTNLACRLFVNEIPLIEEIYEPLGLSAQ---V 169 Query: 293 EQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 + ++++ N+ +GLE +F P +D ++ +FF + Y G Sbjct: 170 QTFLRYNLNKAMQNLGLENVFPAEMTRVEPRILSQLSVDSEETHDFFSGSGSSYVIG 226 >gi|209877300|ref|XP_002140092.1| ribonucleoside-diphosphate reductase beta subunit family protein [Cryptosporidium muris RN66] gi|209555698|gb|EEA05743.1| ribonucleoside-diphosphate reductase beta subunit family protein [Cryptosporidium muris RN66] Length = 357 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 52/313 (16%), Positives = 95/313 (30%), Gaps = 30/313 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD--LALWKSKNGLTDDE 78 + +L L P+KY W Y W + D + + + E Sbjct: 14 QETILLDNPFRWVLFPIKYNRLWNFYKKYEVVFWTAEVISYIKDLGIISEVDRRFVDSIE 73 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 L R +S++ + PE R Y E ++ F I + Sbjct: 74 LLFSSRVFISNTGLDSVLVAC---EFLSQIQVPEARGYFSFTICMENIYKEVFMNYIDVI 130 Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + E +E AK + L+ ++ + + L F E Sbjct: 131 RKYKSEN---IKEYDHKEAKMRYHLKLKDIITDNQHYQRKIEFANQLLDSSVPFS---EK 184 Query: 199 MWFYT----GFAQILSLGRAN-------KMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + YT F+ + L R + + + + I RDE F + + +K Sbjct: 185 LIIYTIIKRVFSSGIHLIRQSFFNKEGPVLEQLCDALDRIRRDELFQAEFCLSIARSMK- 243 Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 TK + +ML A +E + + + Y+ F A+ ++ Sbjct: 244 ------TKPSNEYIISMLENAITIEKGFIFSIFNLEILEIPREDIVAYLLFSADEILVEL 297 Query: 308 GLEPLFKYTENPF 320 F + NPF Sbjct: 298 KYPRHFNVS-NPF 309 >gi|153820502|ref|ZP_01973169.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio cholerae NCTC 8457] gi|126508955|gb|EAZ71549.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio cholerae NCTC 8457] Length = 155 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I Sbjct: 90 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 149 Query: 158 KANWA 162 +A Sbjct: 150 RAKDI 154 >gi|68068657|ref|XP_676239.1| ribonucleotide reductase small subunit [Plasmodium berghei strain ANKA] gi|56495842|emb|CAH97095.1| ribonucleotide reductase small subunit, putative [Plasmodium berghei] Length = 299 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 98/291 (33%), Gaps = 28/291 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 + P+KY W Y + W + D S + +T + L + Sbjct: 1 VMFPIKYKTFWNYYKE-ESLFWTAEDHNFDKDKPFLNSMDKITLSKLLELLYLHLC---- 55 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 I + + PE R + Q E +H+ + I S D + + Sbjct: 56 --DEQAIITSKLLDIIQIPEGRAFYGFQMCMENIHNEVYACIFESYSSDSKQKKEII--- 110 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SL 211 + L+Y ++ +A+ F L + Y+ + F GF+ + Sbjct: 111 -------DKVLKYESVFKKQNWLYSEFEANIPFYNKLILLYISK--VLFNGGFSILASHC 161 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 N + ++ I RDE L +F + N HL K + A L Sbjct: 162 KENNILSCFTGVHEKIQRDEYLQGDFSVMCCN-------HLNNKLKYESVLYYFKSAVEL 214 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322 E + + + F+ + +Q++Q++A+ + F ++ PF W Sbjct: 215 EYNFCVDMLDFNFLKITKEQVKQFLQYLADTMLLNLKYPKHFN-SKYPFTW 264 >gi|157135887|ref|XP_001663605.1| hypothetical protein AaeL_AAEL013412 [Aedes aegypti] gi|108870103|gb|EAT34328.1| conserved hypothetical protein [Aedes aegypti] Length = 244 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 6/106 (5%) Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117 EV + DLA W+ L E+ I L FF +S+ + N+V + L E R + Sbjct: 142 EVDLSKDLADWE---KLKSGEKHFISHVLAFFVASDGSMNENLVERFSQELQVTEARCFY 198 Query: 118 LRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKAN 160 Q E VHS + +I + D LFN +P + KA Sbjct: 199 GFQIAMENVHSEMYSLLIDTYIRDSKQREYLFNAIDNLPCVKKKAE 244 >gi|296127719|ref|YP_003634971.1| ribonucleotide reductase [Brachyspira murdochii DSM 12563] gi|296019535|gb|ADG72772.1| ribonucleotide reductase [Brachyspira murdochii DSM 12563] Length = 357 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 61/325 (18%), Positives = 127/325 (39%), Gaps = 19/325 (5%) Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 + A + ++ N W EV + D + S L +D + K N+ + +S V + Sbjct: 31 HEIARKLKEASEGNTWFSKEVDYKSDKTRFSS---LPEDAQRAFKLNIAYQTLMDSGVTS 87 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY-IITSLGLDEGELFNMYREVPSITA 157 + R +++ R A EE +H+ ++ Y + G E ++ + Sbjct: 88 GFSSILNRIVTSSIWSILYARIAIEENIHAESYSYGLSEVFGHQASETLDLVYNDEFVKH 147 Query: 158 KAN---WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + L + + + D ++ + L + + EG+ F F ++ + Sbjct: 148 RMEKEVELFGNVDELCNLENSNASLDEKKQAVLKLLIGIYLLEGIKFPFSFLVTFTINNS 207 Query: 215 --NKMVGIAEQYQYIMRDES-LHLNFGIDVINQIKIENPHLWTKEFQ-----QKSRTMLH 266 N + G + + I DE +H+ G +++ ++ E ++ F+ +R M Sbjct: 208 YDNAIAGFTKTIKLIAHDELNVHVPTGKNLMTILRKEAHQGFSHLFKNGWFYDTARAMTE 267 Query: 267 EATLLEIAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWM 323 EI +A K G+N+ E ++++ A R I +E + + + W Sbjct: 268 YTVNEEIKWAKYLFDGKEVSGINSSVSEHFIKYWAGIRLKDIDVETEYLSEKKSDIIDWF 327 Query: 324 SEVIDLKKE-KNFFETRVTEYQQGA 347 + D+ K+ ET T YQ+GA Sbjct: 328 NSYRDINKQNAALQETTNTSYQKGA 352 >gi|289677031|ref|ZP_06497921.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae pv. syringae FF5] Length = 151 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 49/85 (57%), Positives = 62/85 (72%) Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63 GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV M Sbjct: 67 AEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVNMTA 126 Query: 64 DLALWKSKNGLTDDERLMIKRNLGF 88 D+ALWK+ GLTDDER ++ RNLGF Sbjct: 127 DIALWKNPEGLTDDERRIVMRNLGF 151 >gi|256111772|ref|ZP_05452743.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 3 str. Ether] gi|265993237|ref|ZP_06105794.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 3 str. Ether] gi|262764107|gb|EEZ10139.1| ribonucleotide-diphosphate reductase subunit beta [Brucella melitensis bv. 3 str. Ether] Length = 138 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 13/144 (9%) Query: 17 VNVDDKRMLNARS------DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 +N+ K R + N++ K W N W+P +VP+ +D+ W++ Sbjct: 1 MNMQHKTATKGRPASVRAINWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET 57 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130 L E+ + R +++ + + P L +F EAVH+ + Sbjct: 58 ---LKPQEKQLTTRVFTGLTLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARS 114 Query: 131 FQYIITSLGLDEGELFNMYREVPS 154 + I ++L L + + YR Sbjct: 115 YSSIFSTLCLTPD-VDDAYRWSEE 137 >gi|258510152|ref|YP_003183586.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476878|gb|ACV57197.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 317 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 14/205 (6%) Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN-- 110 W P ++ D W+ G+ + ER +I R F + E V +++ I Sbjct: 36 TWDPRDIDFTKDKEDWQ---GMNEAERRVILRLCSLFVAGEEAVTLDLLPLIMAVAREGR 92 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 E YL FEEA H+ F+ + + + +L S+ K ++ + + L Sbjct: 93 LEEEMYLTTFLFEEAKHTEVFRRFLDEVAGETSDL--------SVFHKDHYRKIFYEYLP 144 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMR 229 + + + + +V EG+ TG+ +L + NK+ G+ + + + R Sbjct: 145 QAMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFYTALQKENKLPGLIQAIRLLQR 204 Query: 230 DESLHLNFGIDVINQIKIENPHLWT 254 DES H+ +G +++++ EN H+W Sbjct: 205 DESRHIGYGTYLLSRLISENAHIWD 229 >gi|295695705|ref|YP_003588943.1| ribonucleotide reductase [Bacillus tusciae DSM 2912] gi|295411307|gb|ADG05799.1| ribonucleotide reductase [Bacillus tusciae DSM 2912] Length = 296 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 14/203 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111 W P E+ D WK+ LT D++ +I + F + E V +++ I S Sbjct: 31 WDPKELDFTQDREDWKT---LTTDQKELILKLCSLFQAGEEAVTRDLLPLIRVVASEGRL 87 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 E YL FEEA H+ +F+ + + YR +I K N+ + + L Sbjct: 88 EEEMYLTTFLFEEAKHTESFRLFLDEV--------AEYRGDLAIYHKENYKKVFYEYLPQ 139 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIMRD 230 + + + + ++ EG+ TG+ +LGR KM G+ + +Y+ RD Sbjct: 140 AMERLIHDPSPEAQAEASVTYNMIVEGVLAETGYHGFSNALGRQGKMPGLLKAVEYLKRD 199 Query: 231 ESLHLNFGIDVINQIKIENPHLW 253 ES H+ +G +++++ EN ++W Sbjct: 200 ESRHIGYGTYLLSRLIAENENVW 222 >gi|218291056|ref|ZP_03495088.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1] gi|218239010|gb|EED06216.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1] Length = 317 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 86/204 (42%), Gaps = 14/204 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111 W P ++ D WK + + ER +I R F + E V +++ I Sbjct: 37 WDPRDIDFSKDKEDWK---AMNEAERRVILRLCSLFVAGEEAVTLDLLPLIMAVAREGRL 93 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 E YL FEEA H+ F+ + + + +L S K ++ + + L Sbjct: 94 EEEMYLTTFLFEEAKHTEVFRRFLDEVAGESSDL--------STFHKDHYRKIFYEYLPQ 145 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRD 230 + + + + +V EG+ TG+ +L + NK+ G+ + + + RD Sbjct: 146 AMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFYTALQKENKLPGLIQAIRLLQRD 205 Query: 231 ESLHLNFGIDVINQIKIENPHLWT 254 ES H+ +G +++++ EN ++W Sbjct: 206 ESRHIGYGTYLLSRLISENEYIWD 229 >gi|84997706|ref|XP_953574.1| ribonucleoside reductase [Theileria annulata] gi|65304571|emb|CAI72896.1| ribonucleoside reductase, putative [Theileria annulata] Length = 332 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/322 (15%), Positives = 113/322 (35%), Gaps = 30/322 (9%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +D+ +L + + P+++ W Y NN W + DD+ K L Sbjct: 16 NDEILLKENHNRWVMFPIEHDTFWILYKEVENNFWAAEDFIFTDDI---KLLYQLPKPIF 72 Query: 80 LMIKRNLGFFASSESLVANNIV---LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 + L F + ++ + V L + + E R + Q +E +H+ T + Sbjct: 73 NTLLNLLSFHINLDNKLICRPVDITLDLLSEVQIAEARAFYGFQLTDENIHTETISSMF- 131 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 +LFN + +++ + Y + + + + V+ Sbjct: 132 -------QLFNQQLDTNIVSSNTLFLSSYGM---DKIIWLYNECENNKCFFKRVLLLVIM 181 Query: 197 EGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 + + FY + L + + + I D +H F ++ K Sbjct: 182 K-LLFYCSINILRDYLLKEKLLPTFITAFDSITNDRIIHTRFAHCTFRLLQ-------NK 233 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 + + ++ +A LE + + F L+ + Y+++I N G + L+ Sbjct: 234 MLESEVLEIIKQALKLEYQFILQYFTIQFFNLSTNVIKSYLEWIGNNILLVCGYKTLY-T 292 Query: 316 TENPFPWMSEVI---DLKKEKN 334 +E W++ I +++K+ N Sbjct: 293 SEFDIDWLNHPIIDLNIQKQTN 314 >gi|74419022|gb|ABA03237.1| ribonucleoside diphosphate reductase small subunit [Enterobacteria phage LZ7] Length = 244 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 32/216 (14%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ E + + W P EV + D A + N L ++ + NL + + +S+ Sbjct: 32 RHRVFEELIEKSLSFFWRPEEVNLMMDAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQG 88 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + +S+P ++ F E +HS ++ +I+ +L D ++F+ +I Sbjct: 89 RAPSAVLMSLISDPSLDTWVATWTFSETIHSRSYTHIMRNLYADPSKVFDEIVLDKAIMK 148 Query: 158 KANWALQYTQTL----------------------------SSPSFTTGTKDADQEFLQDL 189 +A +Y + +S + K + L Sbjct: 149 RAESIGRYYDDVLDKTRIWENAKENFSYFAENEYDLEAYSNSLTHLEECKRDLMKSLYLC 208 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQY 224 E + FY FA + + M G A+ Sbjct: 209 LHVINALEAIRFYVSFACTFNFHKNMEIMEGHAKIM 244 >gi|146189565|emb|CAM91784.1| hypothetical protein [Platynereis dumerilii] Length = 87 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99 W+ Y A + W EV + D+A W+S L DER I L FFA+S+ +V N Sbjct: 1 PDIWQFYKRAEASFWTAEEVDLSKDVAQWES---LKKDERHFISHVLAFFAASDGIVNEN 57 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 +V + + E R + Q E +HS Sbjct: 58 LVERFSKEVQVTEARFFYGFQIAIENIHSE 87 >gi|156743708|ref|YP_001433837.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus castenholzii DSM 13941] gi|156235036|gb|ABU59819.1| ribonucleotide reductase [Roseiflexus castenholzii DSM 13941] Length = 295 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 108/257 (42%), Gaps = 16/257 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111 W P+++ D+ W++ LTDDER ++ R F + E V +++ + + Sbjct: 33 WNPSDIDFSQDMRDWQT---LTDDERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 89 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 E +L +EEA H+ F +T + G+L + + AN+ + L + Sbjct: 90 EEELFLTSFLWEEAKHTDFFNRFLTEVAGVTGDLSHYHT--------ANYRALIHEALPA 141 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRD 230 + + + ++ EG+ TG+ L R N M G + + +D Sbjct: 142 AMERLRDDPSPEAQAIASLTYNMIVEGVLAETGYHAYFTMLERRNLMPGTRKGIGLLKQD 201 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 ES H+ +G+ +++++ P LW ++ + +++ +++ A+A GL+ Sbjct: 202 ESRHIAYGVYLLSRLINAEPRLWDVVVERMNELVVYAMGVIDDAFACY--EVVPFGLSHD 259 Query: 291 SCEQYMQFIANRRCHQI 307 Q+ RR +I Sbjct: 260 DFMQFAMGQFERRLDRI 276 >gi|148656105|ref|YP_001276310.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus sp. RS-1] gi|148568215|gb|ABQ90360.1| ribonucleotide reductase [Roseiflexus sp. RS-1] Length = 297 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 105/257 (40%), Gaps = 16/257 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111 W P+++ D+ W++ LT DER ++ R F + E V +++ + + Sbjct: 32 WNPSDIDFSQDVRDWQT---LTADERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 E +L +EEA H+ F +T + G+L + + N+ + L + Sbjct: 89 EEELFLTSFLWEEAKHTDFFNRFLTEVTGVTGDLSHYHTS--------NYRALIHEALPA 140 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRD 230 + + + ++ EG+ TG+ L R + M G + + +D Sbjct: 141 AMGRLRDDPSPEAQAIASLTYNMIVEGVLAETGYHAYFTMLERRDLMPGTRKGIGLLKQD 200 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 ES H+ +G+ +++++ P LW ++ + +++ +++ A+A GL+ Sbjct: 201 ESRHIAYGVYLLSRLINAEPRLWDVIVERMNELVVYAMGVIDDAFACY--EVVPFGLSHD 258 Query: 291 SCEQYMQFIANRRCHQI 307 + RR +I Sbjct: 259 DFMHFAMGQFQRRLDRI 275 >gi|298247783|ref|ZP_06971588.1| ribonucleotide reductase [Ktedonobacter racemifer DSM 44963] gi|297550442|gb|EFH84308.1| ribonucleotide reductase [Ktedonobacter racemifer DSM 44963] Length = 293 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 100/245 (40%), Gaps = 19/245 (7%) Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83 L++R + +LP++ + K W P ++ + D W+ L +D R ++ Sbjct: 11 TLSSRGLRHDILPMR---LYHKAKKL--GTWDPRDIDLSQDCQDWQQ---LAEDPRTRLR 62 Query: 84 RNLGFFASSESLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 + F + E V +++ I E +L +EE H+ F+ I+ Sbjct: 63 NLILSFQAGEEAVTLDLLPLIMTVAREGRLEEELFLTTFLWEEGKHTEFFRRILD----- 117 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 E+ ++ + N ++ L T + + ++ ++ EG+ Sbjct: 118 --EVMQAEGDLHGVRTANNTRDLFSDDLPREMNLLLTDPSPVNQARASVLYNMIVEGVLA 175 Query: 202 YTGFAQILSL-GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 TG+ L + N M G+ + QYI RDES H+ +G+ +I+++ ++ LW + + Sbjct: 176 ETGYFSFFRLLTQNNIMPGLQQGIQYIKRDESRHIAYGVFLISRLVAQDKSLW-PIVEDR 234 Query: 261 SRTML 265 + Sbjct: 235 MNELF 239 >gi|294998842|gb|ADF58156.1| ribonucleoside-diphosphate reductase beta subunit [Pseudomonas phage JG004] Length = 348 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 60/308 (19%), Positives = 111/308 (36%), Gaps = 26/308 (8%) Query: 38 KYGWAWEK-YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 KY E W +E+ ++ D K L + +K L F E +V Sbjct: 30 KYPVIVELANQQLEEKLWFSSEMKVELDKLNLK--FKLEPHQLHAVKTVLQLFLKYELIV 87 Query: 97 ANNIVL-AIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154 + + R PE + E AVH+ + I LG+D + Y++ P Sbjct: 88 GEEFWMGKVVRTFPRPEVKLAASILCMMELAVHAEFYNQINVVLGMDTDADYVAYKDDPE 147 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + +W D++ + + +F + E ++ FA + S Sbjct: 148 LMGRMDWLES--------------VLGDEDDVLSVIIFS-LTETALLFSSFAILKSFQCN 192 Query: 215 NK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ--QKSRTMLHEATL 270 + IA DE LH ++INQ E +++ + +K R + Sbjct: 193 GYNDIPVIARGANQSAVDEDLHGVVSAEIINQYYAEIGRPLSEDTRRVEKIRQAIDHVYA 252 Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID 328 E +P G + +A + + ++++ N C ++GLE F+ + P W Sbjct: 253 HECRIVDMAIPGGELNGESAENYKAFVRYRLNVWCRRLGLEDHFENDDTPIKDWFEMNTY 312 Query: 329 LKKEKNFF 336 K +FF Sbjct: 313 AYKMIDFF 320 >gi|269865992|ref|XP_002652118.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063125|gb|EED41939.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 134 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 IK L FFA+S+ +V N+V + E + + Q + Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAMKT 126 >gi|326804460|ref|YP_004327264.1| ribonucleotide-diphosphate reductase beta subunit [Pseudomonas phage PAK_P1] gi|290873873|gb|ADD65076.1| ribonucleotide-diphosphate reductase beta subunit [Pseudomonas phage PAK_P1] Length = 348 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 66/325 (20%), Positives = 116/325 (35%), Gaps = 31/325 (9%) Query: 38 KYGWAWEK-YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 KY E W +E+ ++ D K L + +K L F E +V Sbjct: 30 KYPVIVELANQQLEEKLWFSSEMKVELDKLNLK--FKLEPHQLHAVKTVLQLFLKYELIV 87 Query: 97 ANNIVL-AIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154 + + R PE + E AVH+ + I LG+D + Y++ P Sbjct: 88 GEEFWMGKVVRTFPRPEVKLAASILCMMELAVHAEFYNQINVVLGMDTDADYVAYKDDPE 147 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + + W D++ + + +F + E ++ FA + S Sbjct: 148 LMGRMEWLES--------------VLGDEDDVLSVIIFS-LTETALLFSSFAILKSFQCN 192 Query: 215 NK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ--QKSRTMLHEATL 270 + IA DE LH ++INQ E +++ + +K R + Sbjct: 193 GYNDIPVIARGANQSAVDEDLHGVVSAEIINQYYAEIGRPLSEDTRRVEKIRQAIDHVYA 252 Query: 271 LEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID 328 E +P G + +A + + ++++ N C ++GLE F+ + P W Sbjct: 253 HECRIVDMAIPGGELNGESAENYKAFVRYRLNVWCRRLGLEDHFENDDTPIKDWFEMNTY 312 Query: 329 LKKEKNFFE-TRVTEYQQGAELKWD 352 K +FF EY EL WD Sbjct: 313 AYKMIDFFTPGMGMEY----ELGWD 333 >gi|269864086|ref|XP_002651449.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064500|gb|EED42605.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 130 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125 IK L FFA+S+ +V N+V + E + + Q + Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAMKT 126 >gi|156086328|ref|XP_001610573.1| ribonucleoside-diphosphate reductase beta subunit [Babesia bovis T2Bo] gi|154797826|gb|EDO07005.1| ribonucleoside-diphosphate reductase beta subunit, putative [Babesia bovis] Length = 329 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 105/292 (35%), Gaps = 37/292 (12%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76 + ++ +L ++ + P+ Y W Y N+ W + ++ + S L Sbjct: 16 LEQHNETLLKENANRWVMFPIHYDALWAMYKEIENSFWAAEDFRFANERDTYSS---LPT 72 Query: 77 DERLMIKRNLGF---FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 + R ++ + + + SE I L + PE R + Q E +HS F Sbjct: 73 ELRQLVVKLISYHNRLDRSEVARPATITLDLLADTQIPEARAFYGFQVSYENIHSELFGI 132 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 + +++ +VP AK W T++ + V Sbjct: 133 MSSAIPGT--------IDVPEADAKIEWL---------------TRNLTSTSCFYIKVIL 169 Query: 194 VVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252 F + F + L + K+ + + +D S+HL F + + +K+ Sbjct: 170 QCISKAIFRSAFGILADYLRNSKKLPTLLSALDTVAKDVSIHLKFAMAALEHLKL----- 224 Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304 + ++ +L+ A LE+AY +P +GL+ QY++ N+ Sbjct: 225 --RPTRETVMELLNSAYDLEMAYCRSVLPMDHMGLSEYHLSQYIKNNVNQCL 274 >gi|227902816|ref|ZP_04020621.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus acidophilus ATCC 4796] gi|227869479|gb|EEJ76900.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus acidophilus ATCC 4796] Length = 326 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 91/295 (30%), Gaps = 29/295 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + AW + W P VP+++D K L R + Sbjct: 10 NWNDMEDKVDKSAWARLNDII---WEPRHVPVKEDK---KEFLQLPSPVRCTLLHVFSAL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 + S L + + I PE L + E++ + ++ Y++ L E F+ Sbjct: 64 SFSSGLQMKSGIEQIKVDAITPEEAAVLNALQYLESIANKSYSYVLRELATPEEVDNAFD 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + K + + Q + G V+ E +++GF Sbjct: 124 WANNSPYLQKKIHILNKIYQRGDALQKKAG---------------NVILETALYHSGFFA 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L L KMV AE + +R S + + ++ + + E Sbjct: 169 PLYLFGQGKMVRTAEIIKLALRGTSFSGIYPGYKFRLGYKKLGKTEQEDLKHWIDNLYDE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319 E + + G + YM + N+ +G + T NP Sbjct: 229 LVKNEEKHIR--LLYKGTGWTEDAL-HYMYYSVNKAYLNLGFPGKYPDTSDTINP 280 >gi|163784572|ref|ZP_02179421.1| ribonucleotide-diphosphate [Hydrogenivirga sp. 128-5-R1-1] gi|159880158|gb|EDP73813.1| ribonucleotide-diphosphate [Hydrogenivirga sp. 128-5-R1-1] Length = 139 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 3/138 (2%) Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHE 267 ++ KM + + ++ DESLHL GI+ I I ENP + F + R + + Sbjct: 1 FAMKDTGKMKNVVSGVELVLIDESLHLQNGIEAILTIIEENPEIVDDIKFVENIRDTIID 60 Query: 268 ATLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 A LE+ Y + G++ E YM++IA+RR ++G +P F +NP ++ + Sbjct: 61 AVELELNYLKTKFGGTTIFGVSYKELEMYMKYIADRRLEELGFDPQFNIQQNPLKFLQKE 120 Query: 327 IDLKKEKNFFETRVTEYQ 344 D+KK NFFE TEY Sbjct: 121 -DVKKLTNFFEVSSTEYT 137 >gi|58338007|ref|YP_194592.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus acidophilus NCFM] gi|58255324|gb|AAV43561.1| ribonucleotide reductase [Lactobacillus acidophilus NCFM] Length = 311 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 91/295 (30%), Gaps = 29/295 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + AW + W P VP+++D K L R + Sbjct: 10 NWNDMEDKVDKSAWARLNDII---WEPRHVPVKEDK---KEFLQLPSPVRCTLLHVFSAL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 + S L + + I PE L + E++ + ++ Y++ L E F+ Sbjct: 64 SFSSGLQMKSGIEQIKVDAITPEEAAVLNALQYLESIANKSYSYVLRELATPEEVDNAFD 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + K + + Q + G V+ E +++GF Sbjct: 124 WANNSPYLQKKIHILNKIYQRGDALQKKAG---------------NVILETALYHSGFFA 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L L KMV AE + +R S + + ++ + + E Sbjct: 169 PLYLFGQGKMVRTAEIIKLALRGTSFSGIYPGYKFRLGYKKLGKTEQEDLKHWIDNLYDE 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319 E + + G + YM + N+ +G + T NP Sbjct: 229 LVKNEEKHIR--LLYKGTGWTEDAL-HYMYYSVNKAYLNLGFPGKYPDTSDTINP 280 >gi|71034151|ref|XP_766717.1| ribonucleotide-diphosphate reductase small subunit [Theileria parva strain Muguga] gi|68353674|gb|EAN34434.1| ribonucleotide-diphosphate reductase small subunit, putative [Theileria parva] Length = 326 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 47/301 (15%), Positives = 93/301 (30%), Gaps = 40/301 (13%) Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79 +D+ +L + + P+++ W Y NN W + DDL S L Sbjct: 20 NDEILLKENHNRWVMFPIEHDTFWIMYKEVENNFWAAEDFIFSDDL---NSLFKLPKPLF 76 Query: 80 LMIKRNLGFFASSESLVANNIV---LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136 + L F + ++ V L + + E R + Q +E +H+ T + Sbjct: 77 NSLFHLLSFHINLDNKWVCRPVDMTLELLSEVQIAEARAFYGFQLTDENIHTETIGTMFQ 136 Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196 L T+ T + ++ V VV Sbjct: 137 LLNQPLD-----------------------NTIGQDKITWLYNECEKNKCFFKRVLLVVI 173 Query: 197 EGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 + F F + L + + + +D +H F ++ K Sbjct: 174 SKLLFTATFNILRDYLVKEKLLPTFTLALDAVSKDRHIHTRFAHCTFTLLQ-------HK 226 Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN---APSCEQYMQFIANRRCHQIGLEPL 312 + ++ EA LE +A++ +P + + YM+++ N G L Sbjct: 227 MLESDVVQLIKEALKLEYDFANKFLPLSLMAITQMLTDVLRGYMEWVGNNVLMVCGYRTL 286 Query: 313 F 313 + Sbjct: 287 Y 287 >gi|294887656|ref|XP_002772196.1| ribonucleoside-diphosphate reductase small chain, putative [Perkinsus marinus ATCC 50983] gi|239876179|gb|EER04012.1| ribonucleoside-diphosphate reductase small chain, putative [Perkinsus marinus ATCC 50983] Length = 82 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 Y + W E+ + DL W++ LT +E+ IK L FFA+S+ +V N+ Sbjct: 1 YKQHEASFWTAEEIDLGQDLRDWET---LTKNEQHFIKNVLAFFAASDGIVMENLASKFS 57 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHT 130 + PE R + Q E +HS T Sbjct: 58 CEVQIPEARAFYGFQTGMETIHSET 82 >gi|29135241|ref|NP_803871.1| ORF305 [Pseudomonas phage phiKZ] gi|18996770|gb|AAL83206.1|AF399011_305 PHIKZ305 [Pseudomonas phage phiKZ] Length = 387 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 63/355 (17%), Positives = 127/355 (35%), Gaps = 31/355 (8%) Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 + I K + +L + + Y WE Y W E Sbjct: 3 TKSQLPKKIFNVAKSDYHLPEIILGDDPGLLDSIHTHYPKMWELYKRLKMLDWDELEFDF 62 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121 L +++ + T D M+ + L + ++S+ + +IV + +++ +R Sbjct: 63 STCLVEFETCDKSTYD---MMIKTLAWQWEADSVASRSIVNILSPVMTDSRVWAGYVRIN 119 Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS--PSFTTGTK 179 E VH+ T+ I+ + D + + V + + ++ Sbjct: 120 DNEDVHALTYSEIVRNSFKDPKVILDEILRVEEAQERMVAVARTMGEAHDAVHAYALNQV 179 Query: 180 DADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE-SLHL 235 DQE +F+F++ E + F FA ++GR IA + I +DE +H Sbjct: 180 PNDQELYNKVFMFFIALYFLERIQFMASFAVTFAIGRTGAFQQIAAAVKKIAQDEFEIHA 239 Query: 236 NFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSC 292 +G +VI + E L + + K +L E E+ + + +G G+NA Sbjct: 240 QYGQEVIRALLATERGKLAYSQCKDKIIELLWEIVKTEVTWINYLFSEGRELTGVNATKL 299 Query: 293 EQYMQFIANRRCHQI------------------GLEPLFKYTENPFPWMSEVIDL 329 ++ F AN + G + ++ +NP +M + +D+ Sbjct: 300 INWVLFNANAAATFLSIENDVVEQYQVEFKESAGFDFVWPE-KNPLLYMEDYLDI 353 >gi|312601198|gb|ADQ90453.1| Ribonucleoside-diphosphate reductase beta chain [Mycoplasma hyopneumoniae 168] Length = 223 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 76/231 (32%), Gaps = 23/231 (9%) Query: 123 EEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 VH+ ++ I ++L E E N + +A + + Sbjct: 1 MVGVHARSYGSIFSTLCSSEEIEEAHNWVINNEKLQKRARILIPFYV------------- 47 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 E V + G Y GF L +K+ ++ + I+RD+ +H + Sbjct: 48 --GEDPLKSKVAAALMPGFLLYGGFYLPFYLSARSKLPNTSDIIRLILRDKVIHNYYSGY 105 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 + + E ++ + +L++ LE Y ++ + + A S ++ + A Sbjct: 106 KFQKKVEKLSPEKQDEIKKFTFDLLYKLIELEKDYLYDLYSEVGL---AESAIKFSIYNA 162 Query: 301 NRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 + +G + F E P + + +FF + Y Sbjct: 163 GKFLQNLGYDSPFSKEETEIEPEIFSQLSARADENHDFFSGNGSSYVMALA 213 >gi|213420353|ref|ZP_03353419.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 150 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 16/144 (11%) Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS----- 173 AF E +HS ++ +II ++ D +F+ I +A Y L + Sbjct: 2 TWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHL 61 Query: 174 FTTGTKDAD-----------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 GT + ++ L + E + FY FA + M G A+ Sbjct: 62 LGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAK 121 Query: 223 QYQYIMRDESLHLNFGIDVINQIK 246 + I RDE+LHL ++N ++ Sbjct: 122 IIRLIARDEALHLTGTQHMLNLLR 145 >gi|270000178|gb|ACZ57936.1| m015L [Myxoma virus] Length = 103 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 2/92 (2%) Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 +++ +++ EA ++E + E +P +G+N QY++F+A+R ++G +F T Sbjct: 1 EERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSAT- 59 Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 NPF +M E I L+ + NFFE RV++YQ+ + Sbjct: 60 NPFDFM-ENISLEGKTNFFEKRVSDYQRMGVV 90 >gi|317122349|ref|YP_004102352.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885] gi|315592329|gb|ADU51625.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885] Length = 359 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 88/256 (34%), Gaps = 21/256 (8%) Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDV---NQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61 TG+S G S + L P++ + K W P + + Sbjct: 4 TGVSGAADGRPVAAEARHDAFVTTSRRGLNHDLPPMR---LYHKAKKF--GTWDPRAIDL 58 Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--PECRQYLLR 119 + D WK L D ++ + R + FA+ E V +++ I E +L Sbjct: 59 RQDKEDWK---LLNDAQKDALLRLVSLFAAGEESVTLDLLPLIMVIAREGRLEEEMFLTT 115 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 +EEA H+ + + + GE + Y Q L Sbjct: 116 FLWEEAKHTEFMRRFLDEVAGVSGEDLHHYHTPSYKKIFYEELPQAMNRLLDDP------ 169 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRDESLHLNFG 238 + + + ++ EG+ TG+ L R M G + + RDES HL +G Sbjct: 170 -SPAAQAEASVTYNLIVEGVLAETGYYAFYRTLQRQGVMPGFVQGIRNFQRDESRHLAYG 228 Query: 239 IDVINQIKIENPHLWT 254 + ++ ++ + +W Sbjct: 229 VFLLQRLVAADDSIWN 244 >gi|163848862|ref|YP_001636906.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus aurantiacus J-10-fl] gi|222526817|ref|YP_002571288.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus sp. Y-400-fl] gi|163670151|gb|ABY36517.1| ribonucleotide reductase [Chloroflexus aurantiacus J-10-fl] gi|222450696|gb|ACM54962.1| ribonucleotide reductase [Chloroflexus sp. Y-400-fl] Length = 297 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 108/263 (41%), Gaps = 22/263 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111 W P+ + + D+ W+ L D+ER ++ R F + E V +++ I Sbjct: 32 WNPSLIDLSRDIRDWEQ---LRDEERDLLLRLTALFQAGEEAVTLDLLPLIRTIAREGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 E YL FEEA H+ F I+ + + +L S A++ + L + Sbjct: 89 EEELYLTTFLFEEAKHTDFFARFISEVARVDPDL--------SRYHTASYRALIYEALPA 140 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRD 230 + + + ++ EG+ TG+ + L + M G E + + +D Sbjct: 141 ALHRLDHDPSPLNLAEASLTYNMIVEGVLAETGYHAYFTILDSQDIMPGTREGIRLLKQD 200 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290 ES H+ +G+ +++++ +P +W ++ + +L+ +++ +A + N Sbjct: 201 ESRHIAYGVYLLSRLIATDPQVWDHIVERMNELVLYAMGVIDEIFACY----DPMPFNLQ 256 Query: 291 SCEQYMQFIAN---RRCHQIGLE 310 E + F N RR +++ L Sbjct: 257 -IETFSTFALNQFQRRLNRLELA 278 >gi|171779598|ref|ZP_02920554.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281700|gb|EDT47134.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 138 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 8/133 (6%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ + WEK W+ T +P+ +DL W+ L+D E+ ++ + G Sbjct: 9 NWNEIEDVIDKSTWEKL---TEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 +++ + + V AI + P L F E+VH+ ++ I ++L + E+F Sbjct: 63 TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122 Query: 148 MYREVPSITAKAN 160 + K Sbjct: 123 WTNNNEYLQKKDQ 135 >gi|330949821|gb|EGH50081.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas syringae Cit 7] Length = 65 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 41/61 (67%), Positives = 47/61 (77%) Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 E Y++FIANRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L W Sbjct: 5 MEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSW 64 Query: 352 D 352 D Sbjct: 65 D 65 >gi|66957902|gb|AAY59065.1| ribonucleotide reductase small subunit [Tortoise herpesvirus] Length = 215 Score = 98.9 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 78/211 (36%), Gaps = 23/211 (10%) Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109 N W E DD+ + + L + + F ++++ V N+ + + Sbjct: 21 IKNRWAEDEFMYTDDIKDF---SRLDPEALDFYRFIFTFLSAADDKVNINL-DQLKQLFP 76 Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE----VPSITAKANWALQY 165 + Y Q E VHS T+ + +L ++ + Y E P+I K +W Sbjct: 77 QKDVHHYYATQEDIECVHSRTYAGVQLALFNNDDDARRRYIEANVSHPTIETKFDWL--- 133 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 TK + E + + ++ ++ EG++F FA I L + Sbjct: 134 -----------NTKIMENESVPEKYLLMILVEGIFFVASFASIAYLRNHGGFNSVCRSND 182 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 I RDE++H + N ++ + T E Sbjct: 183 LISRDEAIHTQASCCIFNNYLKDH-EMPTDE 212 >gi|313902757|ref|ZP_07836155.1| ribonucleotide reductase [Thermaerobacter subterraneus DSM 13965] gi|313467054|gb|EFR62570.1| ribonucleotide reductase [Thermaerobacter subterraneus DSM 13965] Length = 349 Score = 98.5 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 50/262 (19%), Positives = 95/262 (36%), Gaps = 24/262 (9%) Query: 1 MANNTGLSPIQAGEKRVNVDDKR-----MLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55 + G +P + G R V R ++R + L P++ + K W Sbjct: 5 VTPGAGAAP-EPGRGRPAVAAARHDAFTTTSSRGLNHDLPPMR---LYHKAKKF--GTWD 58 Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--PEC 113 P + + D W N L D ++ + R + FA+ E V +++ I E Sbjct: 59 PRAIDLSQDREDW---NLLNDAQKDALLRLVSLFAAGEESVTLDLLPLIMVIAREGRLEE 115 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 +L +EEA H+ + + + G + Y PS + + L Sbjct: 116 EMFLTTFLWEEAKHTEFMRRFLDEVAGVSGADLHHYHT-PSYRK------IFYEELPRAM 168 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRDES 232 + + + ++ EG+ TG+ L R M G + + RDES Sbjct: 169 NRLLEDPSPAAQAEASVTYNLIVEGVLAETGYYAFYRTLQRQGVMPGFIQGIRNFQRDES 228 Query: 233 LHLNFGIDVINQIKIENPHLWT 254 HL +G+ ++ ++ + +W Sbjct: 229 RHLAYGVFLLQRLVAADDAIWQ 250 >gi|332976575|gb|EGK13416.1| ribonucleotide-diphosphate reductase subunit beta [Desmospora sp. 8437] Length = 295 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 15/205 (7%) Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN-- 110 W P ++ D W + N + E+ M R F E V +++ I + Sbjct: 29 TWDPKDIDFSQDRKDWATFNEI---EKGMSLRLNSVFLGGEEAVTKDLLPLIQVIANEGR 85 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 E YL +EEA H F+ ++ LG+ SI N+ + + L Sbjct: 86 LEEEMYLTTFLWEEAKHVEVFRRMVDELGITGDL---------SIYHSDNYKKIFYEYLP 136 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ-ILSLGRANKMVGIAEQYQYIMR 229 + + + + ++ EGM TG+ +S R M G + ++Y+ R Sbjct: 137 EAMERLTRDPSPEAQAEASVTYNMIVEGMLAETGYHSTFMSYKRLGIMPGTVQAFEYLKR 196 Query: 230 DESLHLNFGIDVINQIKIENPHLWT 254 DES H+ +G+ +++++ E+ H+W Sbjct: 197 DESRHICYGVYLLSRLIAEHDHIWD 221 >gi|126649263|ref|XP_001388304.1| ribonucleotide reductase small subunit [Cryptosporidium parvum Iowa II] gi|126117398|gb|EAZ51498.1| ribonucleotide reductase small subunit [Cryptosporidium parvum Iowa II] Length = 339 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 45/320 (14%), Positives = 98/320 (30%), Gaps = 31/320 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG--LTDDE 78 ++ +L L P+KY W Y + W + +D + + L E Sbjct: 14 NESILLDNPFRWVLFPIKYSRLWSLYKKYEVSFWTAEVISPMEDKTKLMNMDEKLLDYIE 73 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 KR ++++ + + + PE R Y E ++ F + + Sbjct: 74 MAFAKRIYIDNTCLDTVL---LTCELLGQVQVPEARGYFSFTMCMENIYKELFMNYVEMI 130 Query: 139 GLDEGE-------------LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 ++ + N L + + G + Sbjct: 131 RKNKEKIERTDEVEKKDENNLNSKISKEEYEYNLEKKLNELEDFTKMKELVGNFYDEDTL 190 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRAN-----KMVGIAEQYQYIMRDESLHLNFGID 240 + ++YV+ + ++ + LS N + + I RDE + F + Sbjct: 191 FSEKLIYYVIIKKIFSSSIHLLRLSFSMRNISESELPTQLCDGLDRIRRDEQYQVEFCLS 250 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 + +K TK + +L +A +LE + + + + ++ F A Sbjct: 251 IAKSMK-------TKPSNDQVVNLLEQAIMLEKNFIFSIVDPQVLQIEREDIVAFLLFNA 303 Query: 301 NRRCHQIGLEPLFKYTENPF 320 + + F + NPF Sbjct: 304 DEILVDLKYPRQFNVS-NPF 322 >gi|219847941|ref|YP_002462374.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus aggregans DSM 9485] gi|219542200|gb|ACL23938.1| ribonucleotide reductase [Chloroflexus aggregans DSM 9485] Length = 297 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 108/261 (41%), Gaps = 18/261 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111 W P+ + D+ W N L+D+ER ++ R F + E V +++ I + Sbjct: 32 WNPSLLDFSRDIDDW---NRLSDEERDLLLRLTALFQAGEEAVTLDLLPLIKAIAHDGRL 88 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 E +L FEEA H+ F I+ + + +L PS A AL Sbjct: 89 EEELFLTTFLFEEAKHTDFFARFISEVARVDPDLSRY--HTPSYRALIYDALPRAMQRLE 146 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGIAEQYQYIMRD 230 + + + ++ EG+ TG+ + L N M G+ E + + +D Sbjct: 147 HDPSPF------NLAEASLTYNMIVEGVLAETGYHGYFTILDTHNLMPGVREGIRLLKQD 200 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA-HETMPKGFVGLNA 289 ES H+ +GI +++++ + +W ++ + ++H +++ + ++TMP G Sbjct: 201 ESRHIAYGIYLLSRLIAADRQIWDHIVERMNELVIHALGVIDEIFTSYDTMPFGL---QI 257 Query: 290 PSCEQYMQFIANRRCHQIGLE 310 + + RR +++ L Sbjct: 258 ETFSTFALNQFQRRLNRLELA 278 >gi|238584957|ref|XP_002390722.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553] gi|215454468|gb|EEB91652.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553] Length = 155 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 3/97 (3%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 G+ + ++ +L L P++Y W+ Y A + W E+ + DL W Sbjct: 62 FVGDVELPESEEPLLKESKRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWN- 120 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 N + D+ER I L FFA+S+ + N+V Sbjct: 121 -NRMNDNERHFISHVLAFFAASDGI-HENLVERFSNE 155 >gi|323167149|gb|EFZ52867.1| ribonucleoside-diphosphate reductase 2 subunit beta domain protein [Shigella sonnei 53G] Length = 150 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 6/145 (4%) Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 + K+ A+ + I+RDE++H + + + +E + + +L E Sbjct: 1 MYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLEL 60 Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSE 325 E+ Y E + A + ++ + AN+ +G EPLF NP + Sbjct: 61 YDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAAL 117 Query: 326 VIDLKKEKNFFETRVTEYQQGAELK 350 + + +FF + Y G ++ Sbjct: 118 SPNADENHDFFSGSGSSYVMGKAVE 142 >gi|70606887|ref|YP_255757.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus acidocaldarius DSM 639] gi|68567535|gb|AAY80464.1| hypothetical protein Saci_1112 [Sulfolobus acidocaldarius DSM 639] Length = 308 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 59/280 (21%), Positives = 109/280 (38%), Gaps = 24/280 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K Y W P+ + + D A W + L D ++ ++ F + E Sbjct: 25 LFPMK------LYQLGKKLFWDPSTIDLTQDRADW---DKLRDIDKFLMVNVTSKFGAGE 75 Query: 94 SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 VA ++ I + E YL + FEEA H F+ + ++G+ E + Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFIFEEAKHVEAFRRFLDAVGVKEDLVELTKDV 135 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 P N+A + + L + + + ++ + +V EG+ G+ + Sbjct: 136 SP------NYAKIFYEELPKAMWNLNRDPSPENQVRAAVTYNLVVEGVAAEGGYNIFKYI 189 Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 R N G+A+ YI DES H+ FG +I ++ E K + + A Sbjct: 190 TRTFNIFPGLAKMVNYIATDESRHIAFGTYLIARLIKEGGESVYKAAMEHINYLGPYAVG 249 Query: 271 LEIAYAHETMPKGF---VGLNAPSCEQYMQFIANRRCHQI 307 + ++ +P+G + LN +Y + + N R I Sbjct: 250 I---FSEPNVPQGVEIPLKLNPEVTVEYAKKLLNVRIQAI 286 >gi|67592960|ref|XP_665685.1| ribonucleotide reductase small subunit [Cryptosporidium hominis TU502] gi|54656484|gb|EAL35456.1| ribonucleotide reductase small subunit [Cryptosporidium hominis] Length = 369 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 46/320 (14%), Positives = 99/320 (30%), Gaps = 31/320 (9%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG--LTDDE 78 ++ +L L P+KY W Y + W + +D + + L E Sbjct: 14 NESILLDNPFRWVLFPIKYSRLWSLYKKYEVSFWTAEVISPMEDKTKLMNMDERLLDYIE 73 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 + KR ++++ + + + PE R Y E ++ F + L Sbjct: 74 MVFAKRIYIDNTCLDTVL---LTCELLGQVQVPEARGYFSFTMCMENIYKELFMNYVEML 130 Query: 139 GLDEGE-------------LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 ++ + N L + + G + Sbjct: 131 RKNKEKNEKTDEVEKKDENNLNSKISKEEYEYNLEKKLNELEDFTKMKELVGNFYDEDTL 190 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRAN-----KMVGIAEQYQYIMRDESLHLNFGID 240 + ++YV+ + ++ + LS N + + I RDE + F + Sbjct: 191 FSEKLIYYVIIKKIFSSSIHLLRLSFSMRNISESELPTQLCDGLDRIRRDEQYQVEFCLS 250 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 + +K TK + +L +A +LE + + + + ++ F A Sbjct: 251 IAESMK-------TKPSNDQVVNLLEQAIMLEKNFIFSIVDPQVLQIEREDIVAFLLFNA 303 Query: 301 NRRCHQIGLEPLFKYTENPF 320 + + F + NPF Sbjct: 304 DEILVDLKYPRQFNVS-NPF 322 >gi|289803661|ref|ZP_06534290.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 106 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 3/100 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132 +++ ++ P L +F EAVH+ ++ Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYS 106 >gi|295693640|ref|YP_003602250.1| ribonucleotide reductase [Lactobacillus crispatus ST1] gi|295031746|emb|CBL51225.1| Ribonucleotide reductase [Lactobacillus crispatus ST1] Length = 311 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 91/296 (30%), Gaps = 29/296 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + AW + W P VP+++D K L + + G Sbjct: 10 NWNDMEDRVDKSAWSRLNDII---WEPRNVPVREDK---KEFLQLDKPVQDALLHAFGAL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFN 147 + S L N + I PE L + E++ + + Y+I L ++ N Sbjct: 64 SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNTAKDVIN 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + P + K + Q + V+ E +++GF Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKK---------------AANVILETALYHSGFYA 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L L KMV AE + +R S + + E ++ + Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFGGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDM 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 E + E M KG + Y+ + N+ +G + T NP Sbjct: 229 LIDNEKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281 >gi|262047451|ref|ZP_06020407.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus MV-3A-US] gi|260572221|gb|EEX28785.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus MV-3A-US] Length = 311 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 91/296 (30%), Gaps = 29/296 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + AW + W P VP+++D K L + + G Sbjct: 10 NWNDMEDRVDKSAWSRLNDII---WEPRNVPVREDK---KEFLQLDKPVQDALLHAFGAL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFN 147 + S L N + I PE L + E++ + + Y+I L ++ N Sbjct: 64 SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNTAKDVIN 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + P + K + Q + V+ E +++GF Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKK---------------AANVILETALYHSGFYA 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L L KMV AE + +R S + + E ++ + Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDV 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 E + E M KG + Y+ + N+ +G + T NP Sbjct: 229 LIDNEKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281 >gi|300362937|ref|ZP_07059107.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus gasseri JV-V03] gi|300352987|gb|EFJ68865.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus gasseri JV-V03] Length = 314 Score = 96.2 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 92/286 (32%), Gaps = 26/286 (9%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P VP+ D + + L E+ M+ + G A S +L + I + N E Sbjct: 34 PRRVPIHKDRDEF---SHLPKAEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 90 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSP 172 + E++++ + + ++ E FN + P + K Q+ Sbjct: 91 VYNALQYLESINNKAYGHALSEFSTSDEQRDEAFNWANQNPYLQKKMRLLNTVYQS---- 146 Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 E +V +++ F L L +K+ AE +Y +R + Sbjct: 147 -----------ENAIQKKAAHVFLSTGLYHSSFFGPLYLFGQHKLPRTAELIKYALRITT 195 Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292 L+ + + + + + E+ + H + Sbjct: 196 LNGIYTGIKFRRDYFKLSKEEQENVHNWVYGLCDRLYANELNHIHLLYEDTGLE---DKV 252 Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFF 336 E Y+ + N+ +G EP + + +++ ++FF Sbjct: 253 EHYIHYTLNKALMNLGQEPKYPENVETLDPTLTTGLMESAMIEDFF 298 >gi|269861752|ref|XP_002650564.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220065950|gb|EED43491.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 106 Score = 96.2 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 ++ EA +E + E++P +G+N QY++F+A+R +G + ++ + NPF Sbjct: 7 IEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPF 65 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346 +M E I L+ + NFFE R YQ+G Sbjct: 66 DFM-ENISLQGKTNFFERREANYQKG 90 >gi|297724673|ref|NP_001174700.1| Os06g0257450 [Oryza sativa Japonica Group] gi|255676900|dbj|BAH93428.1| Os06g0257450 [Oryza sativa Japonica Group] Length = 162 Score = 96.2 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%) Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 +N QY++F+A+R +G + ++ NPF WM E+I L+ + NFFE RV +YQ+ Sbjct: 83 MNGDLMSQYIEFVADRLLMALGCKKMYNVA-NPFDWM-ELISLQGKTNFFEKRVGDYQKA 140 Query: 347 AELK 350 + + Sbjct: 141 SVMS 144 >gi|116630259|ref|YP_815456.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus gasseri ATCC 33323] gi|116095841|gb|ABJ60993.1| ribonucleoside-diphosphate reductase class Ib beta subunit [Lactobacillus gasseri ATCC 33323] Length = 320 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 94/286 (32%), Gaps = 26/286 (9%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P VP+ +D + + L E+ M+ + G A S +L + I + N E Sbjct: 40 PRRVPIHEDRDEF---SHLPKTEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 96 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSP 172 + E++++ + + +T E FN + P + K Q+ ++ Sbjct: 97 VYNALQYLESINNKAYGHALTEFSTSNEQRDEAFNWANQNPYLQKKMRLLNTVYQSDNAI 156 Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 +V +++ F L L +K+ AE +Y +R + Sbjct: 157 QKK---------------AAHVFISTGLYHSSFFGPLYLFGQHKLPRTAELIKYALRITT 201 Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292 L+ + + K + + E+ + H + Sbjct: 202 LNGIYTGIKFRRDFFNLSKEEQKNIHKWVYDLCDRLYANELNHIHLLYEDTGLE---DKV 258 Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFF 336 E Y+ + N+ +G EP + + +++ ++FF Sbjct: 259 EHYIHYTLNKALMNLGQEPKYPENVETLDPTLTTGLMESAMIEDFF 304 >gi|329667981|gb|AEB93929.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus johnsonii DPC 6026] Length = 313 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 98/283 (34%), Gaps = 21/283 (7%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P VP+ D K L +E+ +I + G S +L + I + N E Sbjct: 34 PRRVPIYKDQ---KEFLHLPKNEQTVILHSFGSLTLSSTLQMKVALSEIKKDAENSEEVA 90 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT 175 + E++++ + Y++ D + + Y A N LQ L + + Sbjct: 91 VYNALQYLESINNKAYSYVLAEF-SDSKKQEDAYE-----WANQNPYLQKKMKLLNTVYQ 144 Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 +GT + +V +++ F L L +K+ AE +Y +R +L+ Sbjct: 145 SGTTIQKK-------AAHVFLSTGLYHSSFFGPLYLFGQHKLPRTAELIKYALRITTLNG 197 Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295 + + + P K+ + + E+ + + E Y Sbjct: 198 IYTGIKFRRDFFKLPKKEQKKVHDWVYDLCDKLYDNELRHIKLLYKHTDLE---DKIEHY 254 Query: 296 MQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFF 336 + + N+ +G EP + + +++ ++FF Sbjct: 255 IHYTLNKALMNLGQEPKYPENVETLDPILTTGLMESAMIEDFF 297 >gi|42519734|ref|NP_965664.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus johnsonii NCC 533] gi|41584023|gb|AAS09630.1| hypothetical protein LJ_0591 [Lactobacillus johnsonii NCC 533] Length = 313 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 40/285 (14%), Positives = 94/285 (32%), Gaps = 25/285 (8%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P VP+ D K L +E+ +I + G S +L + I + N E Sbjct: 34 PRRVPIYKDQ---KEFLHLPKNEQTVILHSFGSLTLSSTLQMKVALSEIKKDAENSEEVA 90 Query: 116 YLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + E++++ + Y++ + + + + P + K Q+ ++ Sbjct: 91 VYNALQYLESINNKAYSYVLAEFSDSKKQEDAYEWANQNPYLQKKMKLLNTVYQSGNTIQ 150 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 +V +++ F L L +K+ AE +Y +R +L Sbjct: 151 KK---------------AAHVFLSTGLYHSSFFGPLYLFGQHKLPRTAELIKYALRITTL 195 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293 + + + + P K+ + + E+ + + E Sbjct: 196 NGIYTGIKFRRDFFKLPKKEQKKVHDWVYDLCDKLYDNELRHIKLLYKHTDLE---DKVE 252 Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFF 336 Y+ + N+ +G EP + + +++ ++FF Sbjct: 253 HYIHYTLNKALMNLGQEPKYPENVETLDPILTTGLMESAMIEDFF 297 >gi|269862477|ref|XP_002650854.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220065515|gb|EED43201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 122 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 3/97 (3%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118 IK L FFA+S+ +V N+V + E + + Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYG 119 >gi|238853136|ref|ZP_04643525.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 202-4] gi|238834244|gb|EEQ26492.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 202-4] Length = 330 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 91/286 (31%), Gaps = 26/286 (9%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P VP+ D + + L E+ M+ + G A S +L + I + N E Sbjct: 34 PRRVPIHKDRDEF---SHLPKAEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 90 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSP 172 + E++++ + + ++ E FN + P + K Q+ Sbjct: 91 VYNALQYLESINNKAYGHALSEFSTSDEQRDEAFNWANQNPYLQKKMRLLNTVYQS---- 146 Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 E +V +++ F L L +K+ AE +Y +R + Sbjct: 147 -----------ENAIQKKAAHVFLSTGLYHSSFFGPLYLFGQHKLPRTAELIKYALRITT 195 Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292 L+ + + + + + E+ + H Sbjct: 196 LNGIYTGIKFRRDYFKLSKEEQENVHNWVYGLCDRLYANELNHIHLLYEDTGFE---DKV 252 Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFF 336 E Y+ + N+ +G EP + + +++ ++FF Sbjct: 253 EHYIHYTLNKALMNLGQEPKYPENVETLDPTLTTGLMESAMIEDFF 298 >gi|311110156|ref|ZP_07711553.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri MV-22] gi|311065310|gb|EFQ45650.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri MV-22] Length = 332 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 94/286 (32%), Gaps = 26/286 (9%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P VP+ +D + + L E+ M+ + G A S +L + I + N E Sbjct: 34 PRRVPIHEDRDEF---SHLPKTEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 90 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSP 172 + E++++ + + +T E FN + P + K Q+ ++ Sbjct: 91 VYNALQYLESINNKAYGHALTEFSTSNEQRDEAFNWANQNPYLQKKMRLLNTVYQSDNAI 150 Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 +V +++ F L L +K+ AE +Y +R + Sbjct: 151 QKK---------------AAHVFISTGLYHSSFFGPLYLFGQHKLPRTAELIKYALRITT 195 Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292 L+ + + K + + E+ + H + Sbjct: 196 LNGIYTGIKFRRDFFNLSKEEQKNIHKWVYDLCDRLYANELNHIHLLYEDTGLE---DKV 252 Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFF 336 E Y+ + N+ +G EP + + +++ ++FF Sbjct: 253 EHYIHYTLNKALMNLGQEPKYPENVETLDPTLTTGLMESAMIEDFF 298 >gi|268320098|ref|YP_003293754.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus johnsonii FI9785] gi|262398473|emb|CAX67487.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus johnsonii FI9785] Length = 313 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 44/320 (13%), Positives = 103/320 (32%), Gaps = 28/320 (8%) Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80 +KR ++ N + AW + P VP+ D K L +E+ Sbjct: 2 NKRPYYKANNWNTVEEQVDHSAWARLNDIVY---EPRRVPIYKDQ---KEFLHLPKNEQT 55 Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG- 139 +I + G S +L + I + N E + E++++ + Y++ Sbjct: 56 VILHSFGSLTLSSTLQMKVALSEIKKDAENSEEVAVYNALQYLESINNKAYSYVLAEFSD 115 Query: 140 -LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 + + + + P + K + Q+ ++ +V Sbjct: 116 SKKQEDAYEWANQNPYLQKKMKFLNTVYQSGNAIQKK---------------AAHVFLST 160 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 +++ F L L +K+ AE +Y +R +L+ + + + + Sbjct: 161 GLYHSSFFGPLYLFGQHKLPRTAELIKYALRITTLNGIYTGIKFRRDFFKLSKKEQNKVH 220 Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318 + E+++ + E Y+ + N+ +G EP + Sbjct: 221 DWVYDLCDNLYDNELSHIKLLYQNTDLE---DKVEHYIHYTLNKALMNLGQEPKYPENVE 277 Query: 319 PFP--WMSEVIDLKKEKNFF 336 + +++ K+FF Sbjct: 278 TLDPILTTGLMESAMIKDFF 297 >gi|269866968|ref|XP_002652448.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220062479|gb|EED41609.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 100 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 + ++ EA +E + E++P +G+N QY++F+A+R +G + ++ + NPF Sbjct: 1 MKDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPF 59 Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346 +M E I L+ + NFFE R YQ+G Sbjct: 60 DFM-ENISLQGKTNFFERREANYQKG 84 >gi|227878195|ref|ZP_03996169.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus crispatus JV-V01] gi|256844086|ref|ZP_05549573.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] gi|256850509|ref|ZP_05555936.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus crispatus MV-1A-US] gi|312976830|ref|ZP_07788579.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus CTV-05] gi|227862226|gb|EEJ69771.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus crispatus JV-V01] gi|256613991|gb|EEU19193.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] gi|256712714|gb|EEU27708.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus crispatus MV-1A-US] gi|310896158|gb|EFQ45223.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus CTV-05] Length = 311 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 90/296 (30%), Gaps = 29/296 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + AW + W P VP+++D K L + + G Sbjct: 10 NWNDMEDRVDKSAWSRLNDII---WEPRNVPVREDK---KEFLQLDKPVQDALLHAFGAL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 + S L N + I PE L + E++ + + Y+I L ++ N Sbjct: 64 SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNIAKDVIN 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + P + K + Q + V+ E +++ F Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKKV---------------ANVILETALYHSAFYA 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L L KMV AE + +R S + + E ++ + Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDV 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 E + E M KG + Y+ + N+ +G + T NP Sbjct: 229 LIDNEKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281 >gi|70607897|ref|YP_256767.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus acidocaldarius DSM 639] gi|68568545|gb|AAY81474.1| ribonucleoside-diphosphate reductase [Sulfolobus acidocaldarius DSM 639] Length = 314 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 19/240 (7%) Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88 D N P+K Y W P ++ D WK L+ DE+ + + Sbjct: 25 YDWNT-FPMK------LYQIGKRLFWDPAKIDFSKDKEDWK---KLSKDEKNYLLNIVSL 74 Query: 89 FASSESLVANNIVLAIYRHLSNPECR--QYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146 F + E VA +I I ++ YL + AFEEA H+ F+ SL +++ Sbjct: 75 FMAGEEAVAVDITPLISTMINEGRVEDVIYLEQFAFEEAKHAEAFRRFCDSLEINDDLTI 134 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 P + + L S + + + + + + EG+ +G+ Sbjct: 135 FTTEYNPWYQK------IFYEELPSVMWKLRVDPSPENLAVAVTTYNLYVEGVAAESGYK 188 Query: 207 QI-LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 N M G+++ I DES H+ +G +I ++ +EN ++ ++ ++ Sbjct: 189 TFKHIFNSLNIMPGLSKTVNLIATDESRHIAYGTYLITRLIVENGESIYRKAIEQFNKLV 248 >gi|284174067|ref|ZP_06388036.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus solfataricus 98/2] gi|261600997|gb|ACX90600.1| ribonucleotide reductase [Sulfolobus solfataricus 98/2] Length = 308 Score = 93.5 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 18/225 (8%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K Y W P + + D WK N L E++ I FA+ E Sbjct: 25 LFPMK------LYQLGKRLFWDPANIDLSKDAEDWKKLNDL---EKMFIINVGSKFAAGE 75 Query: 94 SLVANNIVLAIYRHLS--NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 VA ++ I + E YL + +EE+ H F+ ++ + E + Y + Sbjct: 76 EAVALDLHPLIVTLVKEGKVEEVMYLEQFVYEESKHVEAFRRFFDAV--NVIEDLSAYTK 133 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 S N+ + + L + + + ++ + + +V EG+ G+ + Sbjct: 134 DLSP----NYRKIFYEELPKAMWNLSKDPSPENQVKAVVTYNLVVEGIAAEGGYNIFRRI 189 Query: 212 -GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 + G+A+ I DES H+ FG+ +I ++ E+ K Sbjct: 190 TNTRKILPGLAKMINLIATDESRHIAFGVYLIARLVKEHGEGIYK 234 >gi|213609160|ref|ZP_03368986.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 144 Score = 93.5 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 9/137 (6%) Query: 225 QYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I RDE+LHL ++N ++ ++P + +E +Q+ + +A E +A Sbjct: 1 RLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLF 60 Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FET 338 G +GLN QY+++I N R +GL+ F+ NP PW++ + + E Sbjct: 61 RDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEV 120 Query: 339 RVTEY---QQGAELKWD 352 V+ Y Q +E+ D Sbjct: 121 EVSSYLVGQIDSEVDTD 137 >gi|15899238|ref|NP_343843.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus solfataricus P2] gi|227829337|ref|YP_002831116.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus L.S.2.15] gi|229578110|ref|YP_002836508.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus Y.G.57.14] gi|229583322|ref|YP_002841721.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus Y.N.15.51] gi|284996696|ref|YP_003418463.1| ribonucleotide reductase [Sulfolobus islandicus L.D.8.5] gi|13815800|gb|AAK42633.1| Ribonuleotide reductase small subunit, probable (nrdB) [Sulfolobus solfataricus P2] gi|227455784|gb|ACP34471.1| ribonucleotide reductase [Sulfolobus islandicus L.S.2.15] gi|228008824|gb|ACP44586.1| ribonucleotide reductase [Sulfolobus islandicus Y.G.57.14] gi|228014038|gb|ACP49799.1| ribonucleotide reductase [Sulfolobus islandicus Y.N.15.51] gi|284444591|gb|ADB86093.1| ribonucleotide reductase [Sulfolobus islandicus L.D.8.5] Length = 308 Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 96/278 (34%), Gaps = 18/278 (6%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K Y W P + + D WK N L E++ I FA+ E Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKKLNDL---EKMFIINVGSKFAAGE 75 Query: 94 SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 VA ++ I + E YL + +EE+ H F+ ++ E + Y + Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFD--IVNVMEDLSAYTK 133 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LS 210 S N+ + + L + + + ++ + + ++ EG+ G+ Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQI 189 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A+ I DES H+ FGI +I ++ E K + A Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKAAMDHINYLAPYAIG 249 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 + + L Y + + N R I Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287 >gi|327440682|dbj|BAK17047.1| ribonucleotide reductase, beta subunit [Solibacillus silvestris StLB046] Length = 294 Score = 92.4 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 79/218 (36%), Gaps = 18/218 (8%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP-- 111 W P ++ D WK L ++++L + F E V +I+ I Sbjct: 30 WNPVDIDFTQDKEDWK---KLNEEQQLEVLTQFAQFIGGEEAVTQDILPMIMAVSKKGWF 86 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 E YL FEEA H+ F + +G+ + + P + L Sbjct: 87 EEESYLTTFLFEEAKHAEFFSLFLEEIGVKDDLTHLL---TPGYRKLFDETLPAVMG--- 140 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRD 230 + + + + + EG+ TG+ +L AN G + + RD Sbjct: 141 ---RLIEDQSPEAMIDAAVTYNIFAEGVLAETGYWFFHEALSSANLFPGFISGIRNVKRD 197 Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268 E H+ FG +I ++ ENP L E ++ + L E Sbjct: 198 EGRHIGFGTFLIQRLISENPEL---ELFERVQQRLQEL 232 >gi|323476430|gb|ADX81668.1| ribonucleotide reductase [Sulfolobus islandicus HVE10/4] Length = 308 Score = 92.4 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 96/278 (34%), Gaps = 18/278 (6%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K Y W P + + D WK N L E++ I FA+ E Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKKLNDL---EKMFIINVGSKFAAGE 75 Query: 94 SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 VA ++ I + E YL + +EE+ H F+ ++ E + Y + Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFD--IVNVMEDLSAYTK 133 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LS 210 S N+ + + L + + + ++ + + ++ EG+ G+ Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPKNQVRAVVTYNLIVEGVAAEGGYNIFRQI 189 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A+ I DES H+ FGI +I ++ E K + A Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKTAMDHINYLAPYAIG 249 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 + + L Y + + N R I Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287 >gi|323473782|gb|ADX84388.1| ribonucleotide reductase [Sulfolobus islandicus REY15A] Length = 308 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 96/278 (34%), Gaps = 18/278 (6%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K Y W P + + D WK N L E++ I FA+ E Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKKLNDL---EKMFIINVGSKFAAGE 75 Query: 94 SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 VA ++ I + E YL + +EE+ H F+ ++ E + Y + Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFD--IVNVMEDLSAYTK 133 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LS 210 S N+ + + L + + + ++ + + ++ EG+ G+ Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQI 189 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A+ I DES H+ FGI +I ++ E K + A Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKTAMDHINYLAPYAIG 249 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 + + L Y + + N R I Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287 >gi|227826697|ref|YP_002828476.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus M.14.25] gi|229583861|ref|YP_002842362.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus M.16.27] gi|227458492|gb|ACP37178.1| ribonucleotide reductase [Sulfolobus islandicus M.14.25] gi|228018910|gb|ACP54317.1| ribonucleotide reductase [Sulfolobus islandicus M.16.27] Length = 308 Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 93/278 (33%), Gaps = 18/278 (6%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K Y W P + + D WK N L E++ I FA+ E Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKKLNDL---EKMFIINVGSKFAAGE 75 Query: 94 SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 VA ++ I + E YL + +EE+ H F+ ++ + E Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFDAVNVMEDLSTYTKDL 135 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LS 210 P+ + + L + + + ++ + + ++ EG+ G+ Sbjct: 136 SPNYKK------IFYEELPKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQI 189 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A+ I DES H+ FGI +I ++ E K + A Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKAAMDHINYLAPYAIG 249 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 + + L Y + + N R I Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287 >gi|238618784|ref|YP_002913609.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus islandicus M.16.4] gi|238379853|gb|ACR40941.1| ribonucleotide reductase [Sulfolobus islandicus M.16.4] Length = 308 Score = 91.6 bits (226), Expect = 2e-16, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 96/278 (34%), Gaps = 18/278 (6%) Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93 L P+K Y W P + + D WK N L E++ I FA+ E Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWKKLNDL---EKMFIINVGSKFAAGE 75 Query: 94 SLVANNIVLAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 VA ++ I + E YL + +EE+ H F+ ++ + E + Y + Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFDAV--NVMEDLSAYTK 133 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LS 210 S N+ + + L + + + + + + ++ EG+ G+ Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPENQVGAVVTYNLIVEGVAAEGGYNIFRQI 189 Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270 + G+A+ I DES H+ FGI +I ++ E K + A Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKAAMDHINYLAPYAIG 249 Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 + + L Y + + N R I Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287 >gi|70921511|ref|XP_734071.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56506464|emb|CAH78308.1| hypothetical protein PC000956.02.0 [Plasmodium chabaudi chabaudi] Length = 87 Score = 91.2 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 2/75 (2%) Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334 + ++P +G+N+ QY++F+A+R +G +F +++NPF WM +I L+ + N Sbjct: 1 FLVWSLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HSKNPFSWMD-LISLQGKTN 58 Query: 335 FFETRVTEYQQGAEL 349 FFE RV +YQ+ + Sbjct: 59 FFEKRVADYQKSGVM 73 >gi|328480216|gb|EGF49142.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus MTCC 5462] Length = 115 Score = 90.8 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 51/112 (45%), Gaps = 6/112 (5%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + WEK W+ T +P+ +DL W+S L+ DE+ ++ G Sbjct: 9 NWNAIEDEVDKATWEKL---TEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGL 62 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 ++L + + + ++ +++ + L F E+VH+ ++ I ++L Sbjct: 63 TLLDTLQSQDGMASLRQNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTP 114 >gi|293380498|ref|ZP_06626562.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 214-1] gi|290922932|gb|EFD99870.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus crispatus 214-1] Length = 311 Score = 90.5 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 89/296 (30%), Gaps = 29/296 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + AW + W P VP+++D K L + + G Sbjct: 10 NWNDMEDRVDKSAWSRLNDII---WEPRNVPVREDK---KEFLQLDKPVQDALLHAFGAL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147 + S L N + I PE L + E++ + + Y+I L ++ N Sbjct: 64 SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNIAKDVIN 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + P + K + Q + V+ E +++ F Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKKV---------------ANVILETALYHSAFYA 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L L KMV AE + +R S + + E ++ + Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDV 228 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320 + E M KG + Y+ + N+ +G + T NP Sbjct: 229 LIDNAKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281 >gi|189490606|ref|YP_001957176.1| hypothetical ribonucleotide reductase beta subunit [Pseudomonas phage 201phi2-1] gi|164609671|gb|ABY63280.1| hypothetical ribonucleotide reductase beta subunit [Pseudomonas phage 201phi2-1] Length = 386 Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 62/347 (17%), Positives = 122/347 (35%), Gaps = 31/347 (8%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69 I K + +L + + + ++ Y + W E P D L ++ Sbjct: 11 IFNNTKTDYNSPEIILGQEPGLFDSIHNHHPALFDLYKRLRSMDWDENEFPYGDCLHEFE 70 Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 + + M+ + L + +++ + IV + L++ +R E +H+ Sbjct: 71 TCDK---QFYDMMIKTLAWQWEADATASRAIVNILGPVLTDSRVWAGYVRINDNENLHAL 127 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAK--ANWALQYTQTLSSPSFTTGTKDADQEFLQ 187 T+ I+ + D + V + + +S ++ T DQ Sbjct: 128 TYSEIVRNSFKDPQVILEEILRVEEAQQRLVTVAKIMGEAHDASHAYACRTIPNDQALYN 187 Query: 188 DLFVFYVV---FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES-LHLNFGIDVIN 243 +F F++ E + F FA +LG+ I Q I +DE +H FG +VI Sbjct: 188 KIFKFFMALYYLERIQFMASFAVTFALGKLGMFQPIVMGVQKIAQDEYEIHAQFGQEVIK 247 Query: 244 Q-IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIA 300 +K E + ++ + + + E + E+ + +G G+ Q++ F Sbjct: 248 ALLKTERGLIAYEDTKAECIKLFWEILMSEVNWLIYLFSEGRELPGVTLKKMVQWVLFNC 307 Query: 301 NRR------------------CHQIGLEPLFKYTENPFPWMSEVIDL 329 N G E F +NP P+M E +DL Sbjct: 308 NAAGTFTGHKDGITDEMRAEFLATTGFELEFP-DKNPLPYMVEYLDL 353 >gi|227894062|ref|ZP_04011867.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus ultunensis DSM 16047] gi|227864144|gb|EEJ71565.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus ultunensis DSM 16047] Length = 269 Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 97/284 (34%), Gaps = 28/284 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + AW + W P VP+++D K L ++ + R G Sbjct: 10 NWNDMEDRVDRSAWARLNDII---WEPRHVPVKEDQ---KEFLKLDKPKQTAVLRAFGSL 63 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147 A + L + I + PE L + E++ + + Y+I LG+D+ E F+ Sbjct: 64 ALASGLQMRIGLDQIKQDAITPEESAVLNALQYLESIANKGYSYVIHELGIDDDVQETFD 123 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 + K + + Q+ DA Q+ D VV E ++ F Sbjct: 124 WANNNYYLQRKIHILNKIYQS----------GDALQKKAAD-----VVLETALYHADFYA 168 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 L L KMV AE + +R S + + + ++ + + Sbjct: 169 PLLLFGEGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGFQKLGKEEKSKLKKWIDNLFSK 228 Query: 268 ATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLE 310 +E + G++ + Y+ + N+ +GL Sbjct: 229 LVTIEEKHIEAMYKDTGWI----DDAKHYLYYSTNKAYLNLGLP 268 >gi|294955280|ref|XP_002788462.1| ribonucleoside-diphosphate reductase small chain, putative [Perkinsus marinus ATCC 50983] gi|239903931|gb|EER20258.1| ribonucleoside-diphosphate reductase small chain, putative [Perkinsus marinus ATCC 50983] Length = 157 Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 5/91 (5%) Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 TK Q + A +E + + +P G +G+NA +Y++F+A+R +G Sbjct: 24 ETLTKNEQHFIKN---SAVNVEREFITDALPVGLIGMNAELMGRYIEFVADRLLVALGYA 80 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341 ++ + NPF WM+ +I L+ + NFFE RV Sbjct: 81 KIYN-SANPFDWMT-MISLQGKTNFFEKRVG 109 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84 Y + W E+ + DL W++ LT +E+ IK Sbjct: 1 YKQHEASFWTAEEIDLGQDLRDWET---LTKNEQHFIKN 36 >gi|227889328|ref|ZP_04007133.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus johnsonii ATCC 33200] gi|227850130|gb|EEJ60216.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus johnsonii ATCC 33200] Length = 313 Score = 89.7 bits (221), Expect = 7e-16, Method: Composition-based stats. Identities = 38/307 (12%), Positives = 96/307 (31%), Gaps = 39/307 (12%) Query: 51 NNHW--MPTEVPMQ-----DDL----------ALWKSKNGLTDDERLMIKRNLGFFASSE 93 N+W + +V +D+ K L +E+ +I + G S Sbjct: 9 ANNWNTVEEQVDRSAWARLNDIVYEPCRVPIYKDQKEFLHLPRNEQTVILHSFGSLTLSS 68 Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYRE 151 +L + I + N E + E++++ + Y++ + + + + Sbjct: 69 TLQMKVALSEIKKDAENSEEVAVYNALQYLESINNKAYSYVLAEFSDSKKQEDAYEWANQ 128 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 P + K Q+ ++ +V +++ F L L Sbjct: 129 NPYLQKKMKLLNTVYQSGNAIQKK---------------AAHVFLSTGLYHSSFFGPLYL 173 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 +K+ AE +Y +R +L+ + + + + + Sbjct: 174 FGQHKLPRTAELIKYALRITTLNGIYTGIKFRRDFFKLSKKEQNKVHDWVYDLCDNLYDN 233 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDL 329 E+++ + E Y+ + N+ +G EP + + +++ Sbjct: 234 ELSHIKLLYQNTDLENK---VEHYIHYTLNKALMNLGQEPKYPENVETLDPILTTGLMES 290 Query: 330 KKEKNFF 336 ++FF Sbjct: 291 AMIEDFF 297 >gi|60416882|emb|CAD71202.1| ribonucleoside-diphosphate reductase small subunit [Bacillus subtilis] Length = 140 Score = 88.9 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 6/117 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + I Sbjct: 26 FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPII 82 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAK 158 H+ + + L A E VH+ ++ I +L E E+F + + K Sbjct: 83 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKK 139 >gi|295398338|ref|ZP_06808380.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] gi|294973477|gb|EFG49262.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus viridans ATCC 11563] Length = 332 Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 106/303 (34%), Gaps = 30/303 (9%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + WE A + W+ T VP+++D + W + L E+ + R L Sbjct: 27 NWNVIEDELDNVVWE---RATSLFWLDTRVPIENDRSKWAN---LQLQEQEQLNRLLILL 80 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EGELFN 147 + + +N + I + + + F E VH+ + I++ D + F+ Sbjct: 81 TNIATYQSNELGEIIRDSARSQQEIAIINNFQFTEMVHTKAYNRILSIFNQDIGSQKAFD 140 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT--GF 205 P + Q+ + L+ F+ + EG+ YT + Sbjct: 141 WVDTNPQVRDYIEKIHMTYQS--------------ADPLKKRFMA-ICVEGILNYTYLSY 185 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 L L R + + + I+R+ESLH + +N + E +F+ ++ Sbjct: 186 LFELWLDRN--FLNLGSMLKMIVRNESLHCYYLNYKVNLLLKEASSKQVAQFKSWGMEIV 243 Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325 + +L G A + AN IGL ++ + + ++ Sbjct: 244 DDFVVLADQLIDTFYTIGSSKTVAFNLVMQE---ANHILAGIGLNEIYAFNQENIAAINT 300 Query: 326 VID 328 +D Sbjct: 301 QLD 303 >gi|311992719|ref|YP_004009587.1| NrdB ribonucleotide reductase beta subunit [Acinetobacter phage Ac42] gi|298684502|gb|ADI96463.1| NrdB ribonucleotide reductase beta subunit [Acinetobacter phage Ac42] Length = 372 Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 61/324 (18%), Positives = 113/324 (34%), Gaps = 21/324 (6%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ W+ Y W + L +K D + N+ + ++S+ + Sbjct: 36 RFDKIWDLYKEMKALDWDEQDFDFAQCLTDFKRVPKKVAD---TMIYNIMWQWETDSVAS 92 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + I + E LR E VH T+ I+ E+ Sbjct: 93 QVPFVLIAPYDPCSEIVAAELRINDNETVHGATYSEIVKLSFDMPKEVLKELLAKTEAHR 152 Query: 158 KANWALQYTQTLS----SPSFTTGTKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILS 210 + + L ++ T +++E D+ +FY V E + F F + Sbjct: 153 RLHVVGTELAALKRRSVELAYHGSTHFSEEEKTIDMMLFYYLMYVLERVQFMISFGVTFT 212 Query: 211 LGRANKMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEA 268 + + I + I +DE +H + ++V+ ++ E+ + + K +L E Sbjct: 213 ICESGVFQAIGSAVKKICQDEFEIHCEYRLEVLKELLASEHGQAAFAKLRPKMIKILKEV 272 Query: 269 TLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEP-----LFKYTENPFP 321 EI +A G VG+NA Q+ F A G +F ENP P Sbjct: 273 IESEITWAKFLFEDGQAIVGMNADVLIQWALFNAKAVAQNFGFTEEELGFVFPE-ENPMP 331 Query: 322 WMSEVIDLKKEKNF-FETRVTEYQ 344 + I++ K +N ET Y+ Sbjct: 332 HLESWININKTQNANQETVNGAYK 355 >gi|6782388|emb|CAB70099.1| ribonucleotide reductase R2 subunit [Plasmodium yoelii] Length = 111 Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 17/125 (13%) Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPS 154 N+ R + E +++ Q E +HS T+ +I + DE E F+ +P+ Sbjct: 1 ENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPA 60 Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 I KA WA ++ D + V EG+ + F Q + Sbjct: 61 IKNKALWAAKWIN--------------DTNSFAERIVANACVEGILYSGSFLQFFGFKKQ 106 Query: 215 NKMVG 219 NK+ G Sbjct: 107 NKLHG 111 >gi|226311199|ref|YP_002771093.1| hypothetical protein BBR47_16120 [Brevibacillus brevis NBRC 100599] gi|226094147|dbj|BAH42589.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 297 Score = 88.1 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 85/204 (41%), Gaps = 15/204 (7%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--P 111 W P ++ D + + N +E L R GF E V +++ I Sbjct: 34 WNPQDIDFTQDREDYANMNPEQKEETL--GRIAGFL-GGEEAVTLDLLPLIMVIAEEGRL 90 Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171 E +L FEEA H+ F+ ++ ++G E +++ + + + + L + Sbjct: 91 EEEMFLTTFLFEEAKHTEFFRLVLDNIG----ESGDLHHFHDDVYKRI-----FHEILPN 141 Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQYIMRD 230 T + + + V+ + EG+ TG+ +L + M G+ + Y+ D Sbjct: 142 ALHRLLTDKSPEAIAEASTVYNMFVEGVLAETGYYAFYEALSKTGLMPGLMQGIGYLKTD 201 Query: 231 ESLHLNFGIDVINQIKIENPHLWT 254 ES H+++G ++ ++ E+ H++ Sbjct: 202 ESRHISYGTFLLQRLICEHRHIYD 225 >gi|291570483|dbj|BAI92755.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira platensis NIES-39] Length = 131 Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 11/140 (7%) Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF--NMY 149 +S+ NI I ++ PE + Q +E +H+ ++QY+I ++ E + + + Sbjct: 1 MDSIQTCNIPY-IKNSVTAPEVSLCMAEQISQEGMHNQSYQYMIETIIPSERRNYVYDFW 59 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 R + + + Q D E + + EGM+FY GF Sbjct: 60 RTDKVLRDRCEFIAGLYQQYVD--------DPTPENYFVSLMADYLLEGMYFYNGFIFFY 111 Query: 210 SLGRANKMVGIAEQYQYIMR 229 +L M G A+ ++ I R Sbjct: 112 NLASRMLMPGSADIFKMINR 131 >gi|47200896|emb|CAF87761.1| unnamed protein product [Tetraodon nigroviridis] Length = 441 Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMYREVPSITA 157 V + + E R + Q E +HS + +I + + E FN +P + Sbjct: 234 VERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIETLPCVKK 293 Query: 158 KANWALQYTQTLSSPS 173 KA+WAL + + + Sbjct: 294 KADWALNWIGNQKAST 309 >gi|171779596|ref|ZP_02920552.1| hypothetical protein STRINF_01433 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281698|gb|EDT47132.1| hypothetical protein STRINF_01433 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 144 Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 9/141 (6%) Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 M IAE + I+RDES+H + E + + +L++ E Y Sbjct: 1 MANIAEIIKLIIRDESVHGTYIGYKFQLGFNELSEKEQDDLRDWMYDLLYQLYENEENYT 60 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEK 333 + VG ++++ AN+ +G +PLF T NP M+ + Sbjct: 61 KTLYDQ--VGWT-EEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MNGISTGTSNH 116 Query: 334 NFFETRVTEYQQGA--ELKWD 352 +FF Y G+ ++ D Sbjct: 117 DFFSQVGNGYLLGSVEAMQDD 137 >gi|213159370|ref|YP_002321413.1| rr2 [Oryctes rhinoceros virus] gi|202073556|gb|ACH96232.1| rr2 [Oryctes rhinoceros virus] Length = 400 Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 114/323 (35%), Gaps = 41/323 (12%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE-RLMIKRNLGFFASSESLV 96 K+ ++ +L + W E D +++ +T E + ++ +G A +S+V Sbjct: 55 KFKDTYDLWLKHQSCFWSVHENDPSVDRDRFET---MTPKEFQEILLCTVGCIAIGDSIV 111 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 + I + +++ E + Q E +H + ++ D N YR Sbjct: 112 LDRIANGLKERVTSIELKAMFSDQEAREFIHKKMYSNML-----DVSHRANYYRSEEFK- 165 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216 N + +TL+ D ++Q F ++ E + F F I Sbjct: 166 ---NEYMSVLETLADKY--------DIGYVQVQMFFIMMCEIILFTPMFQTICYAACKGY 214 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAY 275 + + +MRDE +H ++++ TK ++ +RT+L E + L + Sbjct: 215 CPKLCDLNLLVMRDEYIH-------YENARLQSFKFKTKLDRKFARTVLAEFSELTLQLF 267 Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL----------EPLFKYTENPFPWMSE 325 A N E++ + + + + GL + L+ T P + Sbjct: 268 AKIIGDYDDGVYNFKHVERHFKHVVHGFMSENGLYSSSDEFNESDALYGTT--PAQFYMS 325 Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348 + + + N E T Y + Sbjct: 326 LPKCESKINRMEANSTIYSVPGD 348 >gi|308183792|ref|YP_003927924.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047718|gb|ADO00261.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 308 Score = 86.6 bits (213), Expect = 6e-15, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 89/284 (31%), Gaps = 28/284 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 +K + + N W+ +P+ +D W+ L+D ++ I R L + Sbjct: 10 NWDDIKDNFDKYMWERLTTNFWLDIRIPITNDQTAWQQ---LSDTQQQAITRMLAGTSML 66 Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-DEGELFNMYRE 151 + AI + L F ++VH+ + I +L + GE F + Sbjct: 67 AVYQSEVGAPAIRHDRRTQQEESVLNTITFMKSVHAKSCTTIFRALIPGNGGESFTWADD 126 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 ++ A+ + Q LQ +F + G+ F + ++ Sbjct: 127 NANLQAEIDQLAQM--------------STSDMALQKKALFILTETGL----SFGKYWTI 168 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 + +V + I+R +L + E E Q T + Sbjct: 169 LQTQALVNTYQMLANILRGSALFSAYIGYKFRLRFEELTVSDQTELQYWINTQFDQLMQT 228 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315 E + + +N S + AN +G +++ Sbjct: 229 EKDFLEANLDDATEAINLAS------YGANHALMSLGFNAVYEV 266 >gi|269863385|ref|XP_002651202.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|269865188|ref|XP_002651836.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220063788|gb|EED42221.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220064957|gb|EED42855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 111 Score = 85.8 bits (211), Expect = 9e-15, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + +L+ + P++Y WE Y + W EV M D + + LT +E+ Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSN 110 IK L FFA+S+ +V N+V + Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQI 111 >gi|229172094|ref|ZP_04299659.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus MM3] gi|228611437|gb|EEK68694.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus MM3] Length = 133 Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 ++DES+H F + Q+ +E +E Q++++ +L E +E+AY E + Sbjct: 3 VKDESIHGVFVGILAQQLFVELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTSIGL-- 60 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 +++++ AN+ +GLEP F+ E NP ++ + K +FF + Y + Sbjct: 61 -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKA 118 Query: 347 AELK 350 ++ Sbjct: 119 TNVE 122 >gi|228957728|ref|ZP_04119472.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801971|gb|EEM48844.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus thuringiensis serovar pakistani str. T13001] Length = 133 Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 5/124 (4%) Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 ++DES+H F + QI E +E Q++++ +L E +E+AY E + Sbjct: 3 VKDESIHGVFVGILAQQIFAELSTEEQQEVQKETQELLMELYEIEMAYTEEIYTSIGL-- 60 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 +++++ AN+ +GLEP F+ E NP ++ + K +FF + Y + Sbjct: 61 -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKA 118 Query: 347 AELK 350 ++ Sbjct: 119 TNVE 122 >gi|196040733|ref|ZP_03108032.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus NVH0597-99] gi|206977638|ref|ZP_03238531.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus H3081.97] gi|217958931|ref|YP_002337479.1| ribonucleoside-diphosphate reductase, subunit beta [Bacillus cereus AH187] gi|222095088|ref|YP_002529148.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus Q1] gi|229138142|ref|ZP_04266740.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus BDRD-ST26] gi|229195652|ref|ZP_04322418.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus m1293] gi|196028523|gb|EDX67131.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus NVH0597-99] gi|206744211|gb|EDZ55625.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus H3081.97] gi|217064629|gb|ACJ78879.1| ribonucleoside-diphosphate reductase, subunit beta [Bacillus cereus AH187] gi|221239146|gb|ACM11856.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus Q1] gi|228587901|gb|EEK45953.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus m1293] gi|228645487|gb|EEL01721.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus BDRD-ST26] Length = 133 Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 5/124 (4%) Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 ++DES+H F + QI E +E Q++++ +L E +E+AY E + Sbjct: 3 VKDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIYTSIGL-- 60 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 +++++ AN+ +GLEP F+ E NP ++ + K +FF + Y + Sbjct: 61 -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKA 118 Query: 347 AELK 350 ++ Sbjct: 119 TNVE 122 >gi|206968346|ref|ZP_03229302.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH1134] gi|228951834|ref|ZP_04113932.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069005|ref|ZP_04202298.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus F65185] gi|206737266|gb|EDZ54413.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus AH1134] gi|228714117|gb|EEL65999.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus F65185] gi|228807757|gb|EEM54278.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 133 Score = 84.3 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 5/124 (4%) Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 ++DES+H F + QI E +E Q++++ +L E +E+AY E + Sbjct: 3 VKDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIYTSIGL-- 60 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 +++++ AN+ +GLEP F+ E NP ++ + K +FF + Y + Sbjct: 61 -VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKA 118 Query: 347 AELK 350 ++ Sbjct: 119 TNVE 122 >gi|257057366|ref|YP_003135198.1| ribonucleotide-diphosphate reductase subunit beta [Saccharomonospora viridis DSM 43017] gi|256587238|gb|ACU98371.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis DSM 43017] Length = 328 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 50/258 (19%), Positives = 98/258 (37%), Gaps = 19/258 (7%) Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W P ++ D W+ LTD +RL FA+ E V +I + + Sbjct: 39 FWDPADIDFSVDARDWE---KLTDRQRLSATYLCAQFAAGEEAVTEDIQPFLRAMAAEGR 95 Query: 113 C--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 YL + FEEA H+ F+ + ++GL + P + ++ + + L Sbjct: 96 LGDEMYLAQFCFEEAKHTEAFRRWMDAVGLTDDL-------HPFVAENPHYRKLFYEELP 148 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMR 229 + + ++ + V EG TG+ L + G+ E + + Sbjct: 149 ESLGVLAEDPSPRNQVRASVTYNHVIEGSLALTGYYAWQKLCVSRGILPGMRELVRRVSD 208 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE H+ +G + + LW + QQ+ +L A + I + + + G NA Sbjct: 209 DERRHMAWGTFTCRRHVAADDSLW-EVVQQRMDELLPHALGM-IEWVNRQFDESSDGDNA 266 Query: 290 PSCEQYMQFIANRRCHQI 307 ++++ A+R ++ Sbjct: 267 E----FVRYAADRAQRRL 280 >gi|282852893|ref|ZP_06262234.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 224-1] gi|282556001|gb|EFB61622.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus gasseri 224-1] Length = 277 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 83/261 (31%), Gaps = 23/261 (8%) Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140 M+ + G A S +L + I + N E + E++++ + + +T Sbjct: 1 MLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAAVYNALQYLESINNKAYGHALTEFST 60 Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 E FN + P + K Q+ ++ +V Sbjct: 61 SNEQRDEAFNWANQNPYLQKKMRLLNTVYQSDNAIQKK---------------AAHVFIS 105 Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257 +++ F L L +K+ AE +Y +R +L+ + + K Sbjct: 106 TGLYHSSFFGPLYLFGQHKLPRTAELIKYALRITTLNGIYTGIKFRRDFFNLSKEEQKNI 165 Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317 + + E+ + H + E Y+ + N+ +G EP + Sbjct: 166 HKWVYDLCDRLYANELNHIHLLYEDTGLE---DKVEHYIHYTLNKALMNLGQEPKYPENV 222 Query: 318 NPFP--WMSEVIDLKKEKNFF 336 + +++ ++FF Sbjct: 223 ETLDPTLTTGLMESAMIEDFF 243 >gi|291570484|dbj|BAI92756.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira platensis NIES-39] Length = 123 Score = 83.5 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 + +I E ++ Q + M A E + + + +G+ S EQY +++A Sbjct: 3 LFQKIIPEAMAIFPH-SQDRIYEMFDAAVQHECRWTNHIVGNNILGITEHSTEQYTKYLA 61 Query: 301 NRRCHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 N R IGLE L+ KY ++P+ + D KK + NFFE VT Y + + WD Sbjct: 62 NIRLRSIGLESLYSDPKYQKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVSGWD 121 >gi|213855387|ref|ZP_03383627.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 160 Score = 83.1 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 Y E+ +T+ + + T T++ + ++ ++ L E + FY FA Sbjct: 20 AYYDELIEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNA-LEAIRFYVSFA 78 Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSR 262 + M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ Sbjct: 79 CSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECY 138 Query: 263 TMLHEATLLEI 273 + +A E Sbjct: 139 DLFVQAAQQEK 149 >gi|312865062|ref|ZP_07725290.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] gi|311099173|gb|EFQ57389.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus downei F0415] Length = 318 Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 88/266 (33%), Gaps = 23/266 (8%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A + W+ T +P+++D W+ GL+ E+ + R+L A + + I Sbjct: 25 WERATSLFWLDTRIPIEEDKPKWE---GLSKKEQDQLNRSLLLLAQEATYQSIEAGQIIR 81 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL--FNMYREVPSITAKANWAL 163 + + L F E V + + I+ + + + + Sbjct: 82 NSQRSQQEIAILNNLQFTEMVATKAYNRILRVFNDERDLQVWLDWVDGQEFLQKRLKTID 141 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + ++ L F + EG+ Y+ A L L ++ + Sbjct: 142 AIYNS--------------KDPLAKRF-AAICLEGLMNYSLLAYPLYLWQSKGFTSLGLM 186 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + ++R+ESLH + + + E K+F+ +R + + E + Sbjct: 187 LEMVIRNESLHCYYLGHKVKLLLTEVDQDEAKDFENWARDFVDKLVQQEEDLIEDYF--- 243 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGL 309 + + + AN GL Sbjct: 244 LLDDAKSLAKDLLHQEANHILENFGL 269 >gi|226349643|ref|YP_002776757.1| hypothetical protein ROP_pROB01-04060 [Rhodococcus opacus B4] gi|226245558|dbj|BAH55905.1| hypothetical protein [Rhodococcus opacus B4] Length = 326 Score = 82.8 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 95/269 (35%), Gaps = 15/269 (5%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 A + + W P + D + GL+D+E+ + F + E VA ++ Sbjct: 29 AMKLFRKGNKKFWDPEAIDFSQDAQDFA---GLSDEEKRLTCILAAHFIAGEESVAQDLQ 85 Query: 102 LAIYRHLSNPEC--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 + + YL + FEEA H F+ ++GL + Y + + Sbjct: 86 PFMSAMAAEGRLADEAYLTQFTFEEAKHMQAFRLWFDAVGLSSD--LHEYVDYSEPYQRI 143 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMV 218 +T+ L + T + ++ + V EG TG+ + N + Sbjct: 144 -----FTEELPKSLYALTTDPSPAAQIRASVTYNHVVEGCLALTGYYAWAKVCKSRNILP 198 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 G+ E ++I DE H+ +G + + W ++ + +L A L + + Sbjct: 199 GMQEVIKHIGDDERRHMAWGTFTCRRHVAADDRNWD-VVDERMQELLEPALQLIVR-IFD 256 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 T + G+ Y NRR I Sbjct: 257 TFDEIPFGITIDEMTDYGMDKLNRRLESI 285 >gi|209523562|ref|ZP_03272116.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima CS-328] gi|209495967|gb|EDZ96268.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima CS-328] Length = 112 Score = 82.8 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 8/103 (7%) Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---K 314 Q + M A E + + + +G+ S EQY +++AN R IGLE L+ K Sbjct: 8 QDRIYEMFDAAVQHECRWTNHIVGNNILGITEHSTEQYTKYLANIRLRSIGLESLYSDPK 67 Query: 315 YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352 Y ++P+ + D KK + NFFE VT Y + + WD Sbjct: 68 YQKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVSGWD 110 >gi|240168452|ref|ZP_04747111.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium kansasii ATCC 12478] Length = 314 Score = 82.4 bits (202), Expect = 9e-14, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 101/262 (38%), Gaps = 19/262 (7%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHL 108 W P ++ + W + LTD ER R F + E V +I +A R Sbjct: 29 AKFWDPADIDFSREREDW---DRLTDTERDYAIRLCAQFVAGEEAVTEDIQPFMAAMRAE 85 Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 YL + AFEEA H+ F+ + S+G+ G+L ++PS + Sbjct: 86 GRLADEMYLTQFAFEEAKHTQVFRMWLDSVGV-TGDLHGYLDDLPSYR------QMFYDE 138 Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYI 227 L T + ++ + + EGM TG+ + + G+ ++I Sbjct: 139 LPECLSALTTDPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERGILPGMQRLVRHI 198 Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYAHETMPKGFVG 286 DE H+ +G + N WT F+++ ++ A L + +A P F Sbjct: 199 SDDERRHMAWGTFTCRRHVAANDANWT-VFEERMNELIPLALQLTQDGFALYGDPMPFDL 257 Query: 287 LNAPSCEQYMQFIANRRCHQIG 308 S E++M + +++ + G Sbjct: 258 ----SVEEFMTYSSDKGMRRFG 275 >gi|60416874|emb|CAD71197.1| ribonucleoside-diphosphate reductase small subunit [Bacillus subtilis] Length = 123 Score = 82.0 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 6/106 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77 Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFN 147 H+ + + L A E VH+ ++ I +L E E+F Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEKINEVFE 123 >gi|293556438|ref|ZP_06675016.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] gi|291601402|gb|EFF31676.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E1039] Length = 317 Score = 81.2 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 56/307 (18%), Positives = 106/307 (34%), Gaps = 26/307 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N + WE A + W+ T +P+++D W+ L+ ER + R L F Sbjct: 12 NWNVIEDELDNVVWE---RATSLFWLDTRIPIEEDREKWE---KLSLQERKQLNRLLLFL 65 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147 A+ + + V I + + L F E V++ + I+ D E F+ Sbjct: 66 ANLSTYQSIESVEVIRNSERSQQEIAILNNLQFTEMVNTKAYNRILRVFNKEIDLQEEFD 125 Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207 P + Q GT + F+ V EG+ Y + Sbjct: 126 WIDTEPLVREYLEKIDTIYQ---------GTNPMKKRFMV------VCVEGLLNYAYLSY 170 Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + L V + I+R+ESLH + I + E KEF+ ++ Sbjct: 171 LFELWIEKGFVNLGSMLGMIVRNESLHCYYLNHKIRLLLRETKLEQVKEFKNWGVYIVDY 230 Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327 L I ++ + + ++ AN IGL ++ E ++ + Sbjct: 231 FVELAIRLINDFYN---LENSKTVAINLVKQEANHILTGIGLNKAYQIDEKKLVTINRYL 287 Query: 328 DLKKEKN 334 + ++ + Sbjct: 288 NELRKHD 294 >gi|312140626|ref|YP_004007962.1| ribonucleoside-diphosphate reductase nrdb [Rhodococcus equi 103S] gi|325675746|ref|ZP_08155430.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] gi|311889965|emb|CBH49283.1| ribonucleoside-diphosphate reductase NrdB [Rhodococcus equi 103S] gi|325553717|gb|EGD23395.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi ATCC 33707] Length = 323 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 98/269 (36%), Gaps = 22/269 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 ++ W P ++ D W S LT +E+ F + E V +I Sbjct: 28 LFVKGNAKFWNPADIDFTQDAEDWAS---LTSEEKRSSTYLCTQFIAGEEAVTEDIQP-F 83 Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + + E R YL + FEEA H F+ + ++GLD P + + Sbjct: 84 MKAM-AAEGRFNDEMYLTQFCFEEAKHVQVFRRWMDAVGLDGDL-------HPFVAENPH 135 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMVG 219 + + + L T + ++ + V EG TG+ + G Sbjct: 136 YRTLFYEELPRSLRILETDPSPANQIRASVTYNHVIEGSLALTGYYAWQRVCTERGIFPG 195 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + E + I DE H+ +G + + W QQ+ +L A + I + ++ Sbjct: 196 MQELVRRIGDDERRHMAWGTFTCRRHVAADDSNWD-LVQQRMGELLPHALDM-IQWVNDQ 253 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 + G++ Y+++ A+R ++G Sbjct: 254 FEEPPFGIDPA---VYLEYAADRAQRRLG 279 >gi|289804144|ref|ZP_06534773.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 130 Score = 80.8 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 53/125 (42%), Gaps = 5/125 (4%) Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +T+ + + T T++ + ++ ++ L E + FY FA + Sbjct: 2 IEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNA-LEAIRFYVSFACSFAFA 60 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI--ENPHL--WTKEFQQKSRTMLHEA 268 M G A+ + I RDE+LHL ++N ++ ++P + +E +Q+ + +A Sbjct: 61 ERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQA 120 Query: 269 TLLEI 273 E Sbjct: 121 AQQEK 125 >gi|320450740|ref|YP_004202836.1| ribonucleoside-diphosphate reductase subunit beta [Thermus scotoductus SA-01] gi|320150909|gb|ADW22287.1| ribonucleoside-diphosphate reductase, subunit beta [Thermus scotoductus SA-01] Length = 299 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 102/275 (37%), Gaps = 22/275 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + Y A W P + +++D K+ L+ +++ F + E V +++ Sbjct: 20 KLYHKAKRYFWDPQTIDLEEDQ---KTFQKLSPEQKEASLHLASLFVAGEEAVTLDLLPL 76 Query: 104 IYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + E +L +EA H F ++ + +N+ Sbjct: 77 VQVIAREGRLEEEMFLTTFLVDEAKHVEFFSLLLQA---------TAGEANLERFHGSNY 127 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS----LGRANK- 216 + + L + + ++ + ++ EG+ TG+ L Sbjct: 128 RKIFYEELPQAMGRLLNDPSPEAQVEAAVTYNMIVEGVLAETGYYAYYRSAELLNAQGFA 187 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 + G E ++I RDES H+ +GI +I + NP L+ +++ T+L A + + Sbjct: 188 LPGTLEGIRHIQRDESRHIAYGIYLIARHVAANPELF-PVVERRMSTLLPYALGV-VQDI 245 Query: 277 HETMPKGF-VGLNAPSCEQYMQFIANRRCHQIGLE 310 + P+GF + L+ QY +R ++ L Sbjct: 246 FQAYPEGFPLKLDMNEFIQYAMGQFQKRYRRLELA 280 >gi|70937204|ref|XP_739440.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56516443|emb|CAH87750.1| hypothetical protein PC302623.00.0 [Plasmodium chabaudi chabaudi] Length = 72 Score = 80.4 bits (197), Expect = 4e-13, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%) Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 QY++F+A+R +G +F +++NPF WM +I L+ + NFFE RV +YQ+ + Sbjct: 2 LMSQYIEFVADRLLECLGCSKVF-HSKNPFSWMD-LISLQGKTNFFEKRVADYQKSGVM 58 >gi|289824705|ref|ZP_06544204.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 141 Score = 80.1 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 3/113 (2%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123 L + E+ + NL + +S+ + +A+ +S PE ++ AF Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFS 115 >gi|56410463|ref|YP_145837.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus kaustophilus HTA426] gi|56378360|dbj|BAD74269.1| ribonuleotide reductase small subunit [Geobacillus kaustophilus HTA426] Length = 292 Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 101/276 (36%), Gaps = 24/276 (8%) Query: 42 AWEKYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 AW+ Y A W P E+ + +D +K L + R + F ++E VA Sbjct: 32 AWKLYQMAIRFGTWNPQEIDLSEDKKHFKQ---LDEQRRAYLIHFCTGFWNAEENVALKF 88 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 I + E + +L Q +E H+ F + + E+ + ++ +A Sbjct: 89 CPWIM-IAPSIEQQAFLSTQLVDEFKHTEFFIRYFAEVLQTDREVKVLNLVHDTLDERAR 147 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVG 219 L G ++ + L+ L + V EG+ G+ G+ G Sbjct: 148 QLLS--------VLDKGPEEREIAMLEGLVHYQGVIEGIQAMVGYEVFEAVYGQYGLFPG 199 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHE 278 + E ++ I RDE H+ +G+ ++ + + ++ + + E + + Y E Sbjct: 200 LKEGFKQIKRDEGRHVGYGLRMMKYLSK------NPSYAKRIKELFEEFLPKILVRYDQE 253 Query: 279 TMPKGFVGLNAPSC--EQYMQFIANRRCHQI-GLEP 311 + G ++ + + RR I GLE Sbjct: 254 IVVNGKRYDIPAEVNGKERLTRMYQRRLKDIFGLEA 289 >gi|229544146|ref|ZP_04433205.1| ribonucleotide reductase [Bacillus coagulans 36D1] gi|229325285|gb|EEN90961.1| ribonucleotide reductase [Bacillus coagulans 36D1] Length = 301 Score = 80.1 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 89/231 (38%), Gaps = 16/231 (6%) Query: 43 WEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 ++ Y A N W P ++ D + L ++ER+ + F++ E V +I+ Sbjct: 20 YKLYEKAKRNGGWNPADIDFSQDREDF---LQLREEERIASLPLISSFSAGEEAVTLDIL 76 Query: 102 LAIYRHLSNPECR--QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 ++ +L +EA H+ F ++G+ + +L + + Sbjct: 77 PMLHAMARQGRLEDTMFLTTFLHDEAKHTEMFSRWQQAVGVGDLDLSAYHNDS------- 129 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LSLGRANKMV 218 + + + L T D+ + ++ V+ ++ EG+ +G+ +A Sbjct: 130 -YKRIFYEALPEAMERLYTDDSPEAVIRAATVYNMIVEGVLAESGYYSFRQIYKKAGLFP 188 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269 GI + Y+ DE H+ FGI I ++ + N + K F + A Sbjct: 189 GILQGIDYLNMDEGRHIQFGIYTIQRLVVGNEERF-KLFHDYMDELWMHAY 238 >gi|284033796|ref|YP_003383727.1| ribonucleotide reductase [Kribbella flavida DSM 17836] gi|283813089|gb|ADB34928.1| ribonucleotide reductase [Kribbella flavida DSM 17836] Length = 319 Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 94/266 (35%), Gaps = 15/266 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W P ++ D W+ LT +E+ F + E V ++ + Sbjct: 30 LFDKGNRKFWNPRDLDFSQDAEDWQ---RLTPNEKDNAMMLCAQFIAGEEAVTEDLQPFL 86 Query: 105 YRHLSNPEC--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 + YL + FEEA H+ F+ + ++G+ E L P A Sbjct: 87 QAMAAEGRFGDEMYLTQFCFEEAKHTAVFRLWLDAVGVTED-LHRYVENNPGYRA----- 140 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIA 221 + + L + + ++ + V EG TG+ A L + G+ Sbjct: 141 -IFYEALPVALKSLADDPSPANQVRASVTYNHVVEGTLALTGYHAWNLLCTGRRILPGMQ 199 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281 E ++I DE H+ +G + + W K +L A L++I +A E P Sbjct: 200 ELIRHIGDDERRHMAWGTFTCRRHVAADAANW-KVVTDTMEDLLPHA-LVQIQWAMENSP 257 Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQI 307 + ++ + Y A RR I Sbjct: 258 ELPPEIDPTALMTYAGDRATRRLGAI 283 >gi|297529069|ref|YP_003670344.1| ribonucleotide reductase [Geobacillus sp. C56-T3] gi|297252321|gb|ADI25767.1| ribonucleotide reductase [Geobacillus sp. C56-T3] Length = 315 Score = 79.3 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 97/276 (35%), Gaps = 24/276 (8%) Query: 43 WEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 ++ Y A N W P ++ D + LT +E++ + F++ E V +I+ Sbjct: 34 YKLYEKAKRNGKWNPADIDFSQDKEDFA---RLTSEEKIAALPLVAGFSAGEEAVTLDIL 90 Query: 102 LAIYRHLSNPECR--QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 +L +EA H F +G+ +L S+ Sbjct: 91 PMTNALARQGRLEDVMFLTTFMHDEAKHVEMFSRWQQEVGIGAMDL--------SVFHND 142 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LSLGRANKMV 218 ++ + + L T D+ + ++ V+ ++ EG +G+ +A Sbjct: 143 HYKRIFYEALPEAMNRLYTDDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKAGLFP 202 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 G+ + Y+ DE H+ FG+ I ++ EN + F Q + +AY E Sbjct: 203 GLLQGIDYLNMDEGRHIQFGLYTIQRLVNEN-ERYYDLFIQYMDELWPHVVGY-VAYLTE 260 Query: 279 TMPKGF-------VGLNAPSCEQYMQFIANRRCHQI 307 + + ++ Y+ N R QI Sbjct: 261 LGKRQQQLARTYALEIDYDMLNNYVVKQFNIRKKQI 296 >gi|309805905|ref|ZP_07699937.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 03V1-b] gi|308167681|gb|EFO69828.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus iners LactinV 03V1-b] Length = 145 Score = 78.9 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 17/153 (11%) Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169 + AF AVH+ ++ I ++L + E N ++ A+A + Y Sbjct: 1 HEQAIYANFAFMVAVHARSYGTIFSTLCNSDQIDEAHNWVINNEALQARAKALIPYY--- 57 Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 TG + + G Y GF L NK+ A+ + I+R Sbjct: 58 ------TGNDPLKSKVAAAMMP------GFLLYGGFYLPFYLSSRNKLPNTADIIRLILR 105 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262 D+ +H + Q + E + Sbjct: 106 DKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFVF 138 >gi|229489433|ref|ZP_04383296.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus erythropolis SK121] gi|229323530|gb|EEN89288.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus erythropolis SK121] Length = 318 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 95/267 (35%), Gaps = 17/267 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W PT++ D W+ LT +++ F + E V +I Sbjct: 28 LFTKGNAKFWNPTDLDFSQDARDWQ---ELTSEQQRSATFLCAQFIAGEEAVTEDIQP-F 83 Query: 105 YRHLSNPEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + +S YL + FEEA H+ F+ + +GL +L + + P Sbjct: 84 MKAMSTEGRFGDEMYLTQFCFEEAKHTQVFRLWMDEVGL-TSDLHSYVADNPYYR----- 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMVGI 220 + + L S T + ++ + V EG TG+ + + G+ Sbjct: 138 -QLFYEELPSSLRILETDPSPVNQVRASVTYNHVIEGSLALTGYYAWQKVCATRGILPGM 196 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + + I DE H+ +G + + H W QQ+ ++ A + I + ++ Sbjct: 197 QQLVRKIGDDERRHMAWGTFTCRRHVAADDHNWD-VVQQRMGELMPMALGM-INWVNDQF 254 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQI 307 GL+ +Y A RR I Sbjct: 255 EVQPFGLDNQEFLEYAADRAQRRLSAI 281 >gi|294994707|ref|ZP_06800398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 210] Length = 317 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 24/277 (8%) Query: 40 GWA---WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA + + W P ++ D A W+ L+DDER R F + E V Sbjct: 15 NWASLPLKLFAGGNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAV 71 Query: 97 ANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +I + YL + AFEEA H+ F+ + ++G+ E +++R + Sbjct: 72 TEDIQP-FMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLD 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG- 212 + A + L + ++ + + EGM TG+ + Sbjct: 127 DLPAYRQI---FYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICV 183 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LL 271 + G+ E + I DE H+ +G + + WT F+ + ++ A L+ Sbjct: 184 ERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLI 242 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 E +A F ++Q+ ++ + G Sbjct: 243 EEGFALYGDQPPFDLSKDD----FLQYSTDKGMRRFG 275 >gi|306806029|ref|ZP_07442697.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu007] gi|306970425|ref|ZP_07483086.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu009] gi|308347482|gb|EFP36333.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu007] gi|308352109|gb|EFP40960.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu009] Length = 323 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 24/277 (8%) Query: 40 GWA---WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA + + W P ++ D A W+ L+DDER R F + E V Sbjct: 15 NWASLPLKLFAGGNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAV 71 Query: 97 ANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +I + YL + AFEEA H+ F+ + ++G+ E +++R + Sbjct: 72 TEDIQP-FMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLD 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG- 212 + A + L + ++ + + EGM TG+ + Sbjct: 127 DLPAYRQI---FYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICV 183 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LL 271 + G+ E + I DE H+ +G + + WT F+ + ++ A L+ Sbjct: 184 ERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLI 242 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 E +A F ++Q+ ++ + G Sbjct: 243 EEGFALYGDQPPFDLSKDD----FLQYSTDKGMRRFG 275 >gi|226305446|ref|YP_002765406.1| hypothetical protein RER_19590 [Rhodococcus erythropolis PR4] gi|226184563|dbj|BAH32667.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 318 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 95/267 (35%), Gaps = 17/267 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W PT++ D W+ LT +++ F + E V +I Sbjct: 28 LFTKGNAKFWNPTDLDFSQDARDWQ---ELTSEQQRSATFLCAQFIAGEEAVTEDIQP-F 83 Query: 105 YRHLSNPEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + +S YL + FEEA H+ F+ + +GL +L + + P Sbjct: 84 MKAMSTEGRFGDEMYLTQFCFEEAKHTQVFRLWMDEVGL-TSDLHSYVADNPYYR----- 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMVGI 220 + + L S T + ++ + V EG TG+ + + G+ Sbjct: 138 -QLFYEELPSSLRILETDPSPVNQVRASVTYNHVIEGSLALTGYYAWQKVCATRGILPGM 196 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + + I DE H+ +G + + H W QQ+ ++ A + I + ++ Sbjct: 197 QQLVRKIGDDERRHMAWGTFTCRRHVAADDHNWD-VVQQRMGELMPMALGM-INWVNDQF 254 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQI 307 GL+ +Y A RR I Sbjct: 255 EVQPFGLDNQEFLEYAADRAQRRLSAI 281 >gi|261418216|ref|YP_003251898.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus sp. Y412MC61] gi|319767824|ref|YP_004133325.1| ribonucleotide reductase [Geobacillus sp. Y412MC52] gi|261374673|gb|ACX77416.1| ribonucleotide reductase [Geobacillus sp. Y412MC61] gi|317112690|gb|ADU95182.1| ribonucleotide reductase [Geobacillus sp. Y412MC52] Length = 302 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 98/276 (35%), Gaps = 24/276 (8%) Query: 43 WEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 ++ Y A N W P ++ D + LT +E++ + F++ E V +I+ Sbjct: 21 YKLYEKAKRNGKWNPADIDFSQDKEDFA---RLTSEEKIAALPLVAGFSAGEEAVTLDIL 77 Query: 102 LAIYRHLSNPECR--QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 + +L +EA H F +G+ +L S+ Sbjct: 78 PMAHALARQGRLEDVMFLTTFMHDEAKHVEMFSRWQQEVGIGAMDL--------SVFHND 129 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LSLGRANKMV 218 ++ + + L T D+ + ++ V+ ++ EG +G+ +A Sbjct: 130 HYKRIFYEALPEAMNRLYTDDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKAGLFP 189 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 G+ + Y+ DE H+ FG+ I ++ EN + F Q + +AY E Sbjct: 190 GLLQGIDYLNMDEGRHIQFGLYTIQRLVNEN-ERYYDLFIQYMDELWPHVVGY-VAYLTE 247 Query: 279 TMPKGF-------VGLNAPSCEQYMQFIANRRCHQI 307 + + ++ Y+ N R QI Sbjct: 248 LGKRQQQLARTYALEIDYDMLNNYVVKQFNIRKKQI 283 >gi|254233615|ref|ZP_04926941.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis C] gi|124603408|gb|EAY61683.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis C] Length = 321 Score = 78.5 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 24/277 (8%) Query: 40 GWA---WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA + + W P ++ D A W+ L+DDER R F + E V Sbjct: 15 NWASLPLKLFAGGNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAV 71 Query: 97 ANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +I + YL + AFEEA H+ F+ + ++G+ E +++R + Sbjct: 72 TEDIQP-FMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLD 126 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG- 212 + A + L + ++ + + EGM TG+ + Sbjct: 127 DLPAYRQI---FYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICV 183 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LL 271 + G+ E + I DE H+ +G + + WT F+ + ++ A L+ Sbjct: 184 ERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLI 242 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 E +A F ++Q+ ++ + G Sbjct: 243 EEGFALYGDQPPFDLSKDD----FLQYSTDKGMRRFG 275 >gi|296167463|ref|ZP_06849862.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897211|gb|EFG76818.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 305 Score = 78.1 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 98/263 (37%), Gaps = 22/263 (8%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D A W+ LT+DER R F + E V +I + Sbjct: 21 AKFWNPADIDFSRDRADWEQ---LTEDERHYAIRLCAEFIAGEEAVTEDIQP-FMSAMRV 76 Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H F+ + ++G+ E L ++P+ + + Sbjct: 77 EGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTED-LHQYLDDIPTYRT------IFYE 129 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + ++ + + EGM TG+ + + G+ E + Sbjct: 130 ELPDCLNALSVDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVRR 189 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY-AHETMPKGFV 285 I DE H+ +G + + W + + M L+E + ++ MP G Sbjct: 190 IGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFSLYDPMPFGL- 248 Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308 S +++MQ+ A++ + G Sbjct: 249 -----SVDEFMQYAADKGMRRFG 266 >gi|15839613|ref|NP_334650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CDC1551] gi|31791410|ref|NP_853903.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis AF2122/97] gi|121636145|ref|YP_976368.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148821426|ref|YP_001286180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis F11] gi|215406230|ref|ZP_03418411.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|215414101|ref|ZP_03422758.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|215425440|ref|ZP_03423359.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T92] gi|215433154|ref|ZP_03431073.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|215448517|ref|ZP_03435269.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|218755972|ref|ZP_03534768.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis GM 1503] gi|224988618|ref|YP_002643305.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253797156|ref|YP_003030157.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 1435] gi|260199231|ref|ZP_05766722.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T46] gi|260203377|ref|ZP_05770868.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis K85] gi|289441609|ref|ZP_06431353.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T46] gi|289552485|ref|ZP_06441695.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 605] gi|289572811|ref|ZP_06453038.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis K85] gi|289748002|ref|ZP_06507380.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289748709|ref|ZP_06508087.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T92] gi|289756298|ref|ZP_06515676.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289760339|ref|ZP_06519717.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|289764349|ref|ZP_06523727.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis GM 1503] gi|297632713|ref|ZP_06950493.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN 4207] gi|297729687|ref|ZP_06958805.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN R506] gi|298527626|ref|ZP_07015035.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis 94_M4241A] gi|306779065|ref|ZP_07417402.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu002] gi|306782854|ref|ZP_07421176.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu003] gi|306787222|ref|ZP_07425544.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu004] gi|306791778|ref|ZP_07430080.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu005] gi|306801818|ref|ZP_07438486.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu008] gi|313657013|ref|ZP_07813893.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis KZN V2475] gi|81422934|sp|Q7U2I1|RIR2H_MYCBO RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|238055305|sp|A1KF53|RIR2H_MYCBP RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|13879730|gb|AAK44464.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Mycobacterium tuberculosis CDC1551] gi|31616995|emb|CAD93102.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB (RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium bovis AF2122/97] gi|121491792|emb|CAL70254.1| Probable ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148719953|gb|ABR04578.1| ribonucleoside-diphosphate reductase beta subunit nrdB [Mycobacterium tuberculosis F11] gi|224771731|dbj|BAH24537.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|253318659|gb|ACT23262.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 1435] gi|289414528|gb|EFD11768.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T46] gi|289437117|gb|EFD19610.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 605] gi|289537242|gb|EFD41820.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis K85] gi|289688530|gb|EFD56018.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis 02_1987] gi|289689296|gb|EFD56725.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T92] gi|289696885|gb|EFD64314.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis EAS054] gi|289711855|gb|EFD75871.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis GM 1503] gi|289715903|gb|EFD79915.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T85] gi|298497420|gb|EFI32714.1| ribonucleoside-diphosphate reductase (beta chain) nrdB [Mycobacterium tuberculosis 94_M4241A] gi|308327916|gb|EFP16767.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu002] gi|308332374|gb|EFP21225.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu003] gi|308336125|gb|EFP24976.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu004] gi|308339757|gb|EFP28608.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu005] gi|308351381|gb|EFP40232.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu008] gi|323717223|gb|EGB26432.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis CDC1551A] gi|326905988|gb|EGE52921.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis W-148] gi|328456943|gb|AEB02366.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis KZN 4207] Length = 314 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 97/263 (36%), Gaps = 21/263 (7%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D A W+ L+DDER R F + E V +I + Sbjct: 29 AKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMSAMRA 84 Query: 111 ---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H+ F+ + ++G+ E +++R + + A + Sbjct: 85 EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLDDLPAYRQI---FYA 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + ++ + + EGM TG+ + + G+ E + Sbjct: 138 ELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRR 197 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHETMPKGFV 285 I DE H+ +G + + WT F+ + ++ A L+E +A F Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLIEEGFALYGDQPPFD 256 Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308 ++Q+ ++ + G Sbjct: 257 LSKDD----FLQYSTDKGMRRFG 275 >gi|306795820|ref|ZP_07434122.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu006] gi|308343762|gb|EFP32613.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu006] Length = 314 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 97/263 (36%), Gaps = 21/263 (7%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D A W+ L+DDER R F + E V +I + Sbjct: 29 AKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMSAMRA 84 Query: 111 ---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H+ F+ + ++G+ E +++R + + A + Sbjct: 85 EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLDDLPAYRQI---FYA 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + ++ + + EGM TG+ + + G+ E + Sbjct: 138 ELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRR 197 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHETMPKGFV 285 I DE H+ +G + + WT F+ + ++ A L+E +A F Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLIEEGFALYGDQPPFD 256 Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308 ++Q+ ++ + G Sbjct: 257 LSKDD----FLQYSTDKGMRRFG 275 >gi|260185097|ref|ZP_05762571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis CPHL_A] gi|289445765|ref|ZP_06435509.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis CPHL_A] gi|289418723|gb|EFD15924.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis CPHL_A] Length = 314 Score = 77.7 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 97/263 (36%), Gaps = 21/263 (7%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D A W+ L+DDER R F + E V +I + Sbjct: 29 AKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMSAMRA 84 Query: 111 ---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H+ F+ + ++G+ E +++R + + A + Sbjct: 85 EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLDDLPAYRQI---FYA 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + ++ + + EGM TG+ + + G+ E + Sbjct: 138 ELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRR 197 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHETMPKGFV 285 I DE H+ +G + + WT F+ + ++ A L+E +A F Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLIEEGFALYGDQPPFD 256 Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308 ++Q+ ++ + G Sbjct: 257 LSKDD----FLQYSTDKGMRRFG 275 >gi|284167352|ref|YP_003405630.1| ribonucleotide reductase [Haloterrigena turkmenica DSM 5511] gi|284017007|gb|ADB62957.1| ribonucleotide reductase [Haloterrigena turkmenica DSM 5511] Length = 296 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 51/317 (16%), Positives = 118/317 (37%), Gaps = 39/317 (12%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 M+ + +SP+++ +N KR++ + ++Y HW P + Sbjct: 9 MSEESPVSPLES--SGLNEHPKRLVRSA--------IEY-------------HWDPAAID 45 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 + A ++ + L+ E ++ L F + E V ++ + L + ++Y+ Q Sbjct: 46 V---RADQEAVSELSRVEFTRLRGLLAQFGAGERAVTTDLAP-LAVVLDGSDEQRYIATQ 101 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVP-SITAKANWALQYTQTLSSPSFTTGTK 179 ++EA H+ F + E E + P + + + S+ + Sbjct: 102 LYDEARHTELFDRYWKRVIRPEEESRGLIPTEPMADRWSHDDYRELFDRTSNAMARLLER 161 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFA-----QILSLGRANKMVGIAEQYQYIMRDESLH 234 D + + +++ EG+ T + L ++ G+ ++Y+ RDE H Sbjct: 162 DTSETRARAFCHYHLTVEGILAQTAYRWVETRYSGELEAVPELPGLVNGFRYLRRDEGRH 221 Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 ++FG+ + ++ + T + E L + + G +G + Sbjct: 222 VSFGVTKVRKLVDKGVDPET------IVETIDELVPLVETTIDQMVRDGSIGADRNGILN 275 Query: 295 YMQFIANRRCHQIGLEP 311 + +RR Q+G+ P Sbjct: 276 RIDTARDRRLEQVGVVP 292 >gi|297563117|ref|YP_003682091.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847565|gb|ADH69585.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 331 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 95/275 (34%), Gaps = 29/275 (10%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + + W P ++ + D W+ GL + R I R FF + E V +I Sbjct: 35 KLFAKGNARFWNPADIDLSRDAEDWE---GLGEGARARILRLCAFFVAGEEAVTEDIQPF 91 Query: 104 IYRHLSNPEC--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + + YL + AFEEA H F+ + +LG+ E + A + Sbjct: 92 LRAMAAEGRLGDEMYLTQFAFEEARHVQAFRLWLDALGVHEDL-------HGYVDANPGY 144 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGI 220 + + L S + + ++ + V EG TG+ L A + G+ Sbjct: 145 RTLFYEELPSSLEALLEDPSPRNQVRASVTYNHVIEGSLALTGYYAWNHLCTALDVFPGM 204 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 + I DE H+ +G + + W R L E T+ Sbjct: 205 RRIVRMIGDDERRHMAWGTFTCRRHVAADDANW-----DVVRDRLDELLPH----VTSTV 255 Query: 281 PKGFVGLNAPSCEQY-------MQFIANRRCHQIG 308 +G P+ +Y +++ +R ++G Sbjct: 256 ERGEEPSGDPATRRYELPPGELVRYAGDRALRRLG 290 >gi|254549173|ref|ZP_05139620.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 311 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 97/263 (36%), Gaps = 21/263 (7%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D A W+ L+DDER R F + E V +I + Sbjct: 29 AKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMSAMRA 84 Query: 111 ---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H+ F+ + ++G+ E +++R + + A + Sbjct: 85 EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLDDLPAYRQI---FYA 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + ++ + + EGM TG+ + + G+ E + Sbjct: 138 ELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRR 197 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHETMPKGFV 285 I DE H+ +G + + WT F+ + ++ A L+E +A F Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLIEEGFALYGDQPPFD 256 Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308 ++Q+ ++ + G Sbjct: 257 LSKDD----FLQYSTDKGMRRFG 275 >gi|134097201|ref|YP_001102862.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|291005341|ref|ZP_06563314.1| ribonucleotide-diphosphate reductase subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|238055312|sp|A4F7B2|RIR2H_SACEN RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|133909824|emb|CAL99936.1| ribonucleoside-diphosphate reductase beta chain [Saccharopolyspora erythraea NRRL 2338] Length = 317 Score = 77.7 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 95/264 (35%), Gaps = 16/264 (6%) Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107 W P ++ D W+ GLT++ER + F + E V ++ + Sbjct: 31 KGNAKFWDPADIDFTRDAEDWQ---GLTEEERRSVAMLCSQFIAGEEAVTQDLQPFMAAM 87 Query: 108 LSNPEC--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 + YL + FEEA H+ F+ + ++GL G+L + E P A + Sbjct: 88 AAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGL-TGDLHSHVAENPGYRA------IF 140 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQY 224 + L + ++ + V EG TG+ + R + G+ E Sbjct: 141 YEELPRSLNALHDDPSPANQVRASVTYNHVVEGTLALTGYFAWQKICRSRGILPGMQEVV 200 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284 + I DE H+ +G + + W Q++ + +L A I + E P+ Sbjct: 201 RRIGDDERRHMAWGTFTCRRHVAADESNWD-VVQEQMQHLLPLAVTQ-IQWRPEDAPEET 258 Query: 285 V-GLNAPSCEQYMQFIANRRCHQI 307 L+ Y A RR I Sbjct: 259 PFRLDIDELAAYASDRAGRRLGAI 282 >gi|226438223|pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS Length = 323 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 24/277 (8%) Query: 40 GWA---WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 WA + + W P ++ D A W+ L+DDER R F + E V Sbjct: 24 NWASLPLKLFAGGNAKFWHPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAV 80 Query: 97 ANNIVLAIYRHLSN---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153 +I + YL + AFEEA H+ F+ + ++G+ E +++R + Sbjct: 81 TEDIQP-FMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLD 135 Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG- 212 + A + L + ++ + + EGM TG+ + Sbjct: 136 DLPAYRQI---FYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICV 192 Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LL 271 + G+ E + I DE H+ +G + + WT F+ + ++ A L+ Sbjct: 193 ERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLI 251 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 E +A F ++Q+ ++ + G Sbjct: 252 EEGFALYGDQPPFDLSKDD----FLQYSTDKGMRRFG 284 >gi|15607374|ref|NP_214747.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Rv] gi|148659997|ref|YP_001281520.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|167968770|ref|ZP_02551047.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis H37Ra] gi|306774323|ref|ZP_07412660.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu001] gi|306974656|ref|ZP_07487317.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu010] gi|307082365|ref|ZP_07491535.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu011] gi|307082709|ref|ZP_07491822.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu012] gi|81556745|sp|P96416|RIR2H_MYCTU RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|238055310|sp|A5TYV8|RIR2H_MYCTA RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|1871607|emb|CAB07000.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB (RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium tuberculosis H37Rv] gi|148504149|gb|ABQ71958.1| ribonucleoside-diphosphate reductase subunit beta NrdB [Mycobacterium tuberculosis H37Ra] gi|308217156|gb|EFO76555.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu001] gi|308356059|gb|EFP44910.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu010] gi|308360014|gb|EFP48865.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu011] gi|308367580|gb|EFP56431.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis SUMu012] Length = 314 Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 97/263 (36%), Gaps = 21/263 (7%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D A W+ L+DDER R F + E V +I + Sbjct: 29 AKFWHPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMSAMRA 84 Query: 111 ---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H+ F+ + ++G+ E +++R + + A + Sbjct: 85 EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLDDLPAYRQI---FYA 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + ++ + + EGM TG+ + + G+ E + Sbjct: 138 ELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRR 197 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT-LLEIAYAHETMPKGFV 285 I DE H+ +G + + WT F+ + ++ A L+E +A F Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWT-VFETRMNELIPLALRLIEEGFALYGDQPPFD 256 Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308 ++Q+ ++ + G Sbjct: 257 LSKDD----FLQYSTDKGMRRFG 275 >gi|134303461|ref|YP_001111330.1| ribonucleotide reductase small subunit [Gryllus bimaculatus nudivirus] gi|134022847|gb|ABO45396.1| ribonucleotide reductase small subunit [Gryllus bimaculatus nudivirus] Length = 371 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 51/314 (16%), Positives = 106/314 (33%), Gaps = 31/314 (9%) Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 + +L W P E+ + D A + + + + LG A +++V N+ Sbjct: 72 YNFWLKQVALAWSPEEISLSKDKATFH---RAPEQLKKISACMLGMLAIGDNIVLQNL-S 127 Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 + ++N + RQ E HS + + L ++ + Sbjct: 128 DVSEIITNNYVLNAISRQEDVEKTHSDFYSRSLDVLNDVGKSVYYKSEHFINNELY---- 183 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 +K L + F ++ E ++F F + LG A Sbjct: 184 ----------DIQQFSKKHSTNNLNKIAFFIMICERLYFLPAFVTVAYLGITGYAPHTAL 233 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI---AYAHET 279 +Y+MRDE+LH N + + + K +Q++ +L+E + + Sbjct: 234 GNRYVMRDENLH-------YNLWRNISANFEYKMNKQEALNILNEFEYILKCTIKNIFKN 286 Query: 280 MPKGFVGLNAPSCEQYMQFIA-NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFET 338 + ++F + R GL P +K + P + + + + N E+ Sbjct: 287 YSSKDSKFSLDIMLDILRFAFEDFRITN-GLIP-YKENKKPKTDLLNYLSYETDFNLMES 344 Query: 339 RVTEYQQGAELKWD 352 Y+ E++ D Sbjct: 345 TSVNYKTELEIEAD 358 >gi|213024643|ref|ZP_03339090.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 119 Score = 77.0 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 3/112 (2%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122 L + E+ + NL + +S+ + +A+ +S PE ++ AF Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAF 114 >gi|121730673|ref|ZP_01682814.1| ATP-dependent Zn proteases [Vibrio cholerae V52] gi|121627739|gb|EAX60372.1| ATP-dependent Zn proteases [Vibrio cholerae V52] Length = 129 Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEP 311 +E +Q+S + EA E +A G +GLN QY+++I N R +GLEP Sbjct: 17 VAEECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEP 76 Query: 312 LFK-YTENPFPWMSEVIDLK 330 + T NP PW++ + Sbjct: 77 AYPAATNNPIPWINAWLSSD 96 >gi|120404438|ref|YP_954267.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium vanbaalenii PYR-1] gi|238055311|sp|A1TAR1|RIR2H_MYCVP RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|119957256|gb|ABM14261.1| ribonucleotide reductase [Mycobacterium vanbaalenii PYR-1] Length = 312 Score = 76.2 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 101/264 (38%), Gaps = 24/264 (9%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D A W+S LTD ER R F + E V +I + Sbjct: 29 AKFWDPADIDFSRDRADWES---LTDLERDWATRLCAEFIAGEEAVTQDIQP-FMAAMRA 84 Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H+ F+ + ++G+ E E+P+ + + + Sbjct: 85 EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGITEDLQ-GYLDELPA------YCQMFYE 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + T + ++ + V EGM TG+ + + G+ E + Sbjct: 138 ELPASLDALATDPSPAAQVRASVTYNHVIEGMMALTGYYAWHRICVDRGILPGMQELVRR 197 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYA-HETMPKGF 284 I DE H+ +G + + W F+ + ++ A E +A ++ +P G Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANW-AVFETRMNELIPLALRNTEDGFALYDEVPFGL 256 Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308 E++ Q+ A++ + G Sbjct: 257 T------MEEFQQYAADKGMRRFG 274 >gi|56421306|ref|YP_148624.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus kaustophilus HTA426] gi|10800082|dbj|BAB16601.1| unnamed protein product [Geobacillus thermoleovorans] gi|56381148|dbj|BAD77056.1| ribonuleotide reductase small subunit [Geobacillus kaustophilus HTA426] Length = 302 Score = 76.2 bits (186), Expect = 7e-12, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 97/283 (34%), Gaps = 29/283 (10%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 ++ + N W P ++ D + S LT +E++ + F++ E V Sbjct: 17 EHPMFKLYEKAKRNGKWNPADIDFSQDQKDFAS---LTSEEKISALPLVAGFSAGEEAVT 73 Query: 98 NNIVLAIYRHLSNPECR--QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 +I+ + +L +EA H F ++G+ + +L S+ Sbjct: 74 LDILPMAHALARQGRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDL--------SV 125 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI-LSLGRA 214 ++ + + L D+ + ++ V+ ++ EG +G+ +A Sbjct: 126 FHNDHYKRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKA 185 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 G+ + Y+ DE H+ FGI I +I E + + + + E I Sbjct: 186 GLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNE-----DERYYELFIRYMDELWPHVIG 240 Query: 275 YAHETMPKG----------FVGLNAPSCEQYMQFIANRRCHQI 307 Y G + ++ Y+ N R QI Sbjct: 241 YVDYLTELGKRQQQLARTYALEIDYDLLRHYVIKQFNLRKKQI 283 >gi|331699199|ref|YP_004335438.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia dioxanivorans CB1190] gi|326953888|gb|AEA27585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia dioxanivorans CB1190] Length = 324 Score = 76.2 bits (186), Expect = 8e-12, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 97/277 (35%), Gaps = 20/277 (7%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++ + HW P ++ D +TDDER F + E Sbjct: 26 FPMR------LFAKGNARHWNPADIDFSQDARD---IAAMTDDERWWTFALAAQFMAGEE 76 Query: 95 LVANNIVLAIYRHLSNPEC--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V ++ + + YL + FEEA H+ F+ ++G+ E Sbjct: 77 SVTQDLQPFVAAMAAEGRLADEMYLTQFVFEEAKHTDAFRRWFDAVGMTEDL-------H 129 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL- 211 P I ++ +TQ L + + + + ++ + + EG TG+ + Sbjct: 130 PFIEFNEHYMQIFTQELPASLYALAADPSPRNQVRASVTYNHIVEGTLALTGYFTWAKIC 189 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271 + G+ + ++I DE H+ +G + + ++ ++ M+ ++ Sbjct: 190 TSRGILPGMQQVIKHIGDDERRHMAWGTFTCRRHVAADDAMFDVVDERMQELMVPSMGVV 249 Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 + G V + + ++ ++ ++G Sbjct: 250 TGTFEKVEADGGQVPFDV-DMNELAEYAMDKLGRRLG 285 >gi|284046663|ref|YP_003397003.1| ribonucleotide reductase [Conexibacter woesei DSM 14684] gi|283950884|gb|ADB53628.1| ribonucleotide reductase [Conexibacter woesei DSM 14684] Length = 306 Score = 75.8 bits (185), Expect = 1e-11, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 94/270 (34%), Gaps = 9/270 (3%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 E Y HW ++ D W + ++ER L F E VA + Sbjct: 38 ELYSLWERQHWAVQDLDFTQDKLDWHERFD--EEERFARMYGLSAFFIGEQRVAAELGP- 94 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 + R + R +L Q +EA H F + + + E S + + Sbjct: 95 LMRAAPQEDMRLFLCTQIADEARHVAFFDRFYSEVDVLGVEGLEEKLAATSEHLNPEFGV 154 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFV-FYVVFEGMWFYTGFAQILSLGRA-NKMVGIA 221 + + L S T+ D E L + +++V EGM TG I+ + G Sbjct: 155 LFDEMLKSRVDRLATEPEDLETLVEAITIYHMVIEGMLALTGQHFIIDYNEREGTLPGFV 214 Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM--LHEATLLEIAYAHET 279 E + + RDE H+ FG + + +P Q+ + + E L+ +A + Sbjct: 215 EGFINVARDEHRHVAFGARFLRDMARSDPRHV-AAIQRTLGEIAPVAEGV-LKPKWAPDD 272 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 G++ + RR IGL Sbjct: 273 DDFEIFGISVTETRAFAFRALERRMKVIGL 302 >gi|328861691|gb|EGG10794.1| hypothetical protein MELLADRAFT_93450 [Melampsora larici-populina 98AG31] Length = 130 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 W E+ D+ W+ N L +DE+ IK L F A+S+ +V N++ + E Sbjct: 60 FWTAGEIDPSKDMHNWE--NRLKNDEKHFIKHILAFLATSDRIVNQNLIKRYSGEVQAAE 117 Query: 113 CRQYLLRQAFE 123 + + Q Sbjct: 118 AQCFYGFQIMI 128 >gi|213646444|ref|ZP_03376497.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 141 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 3/109 (2%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 L + E+ + NL + +S+ + +A+ +S PE ++ Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVET 111 >gi|330861132|emb|CBX71395.1| hypothetical protein YEW_EY21270 [Yersinia enterocolitica W22703] Length = 90 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 3/79 (3%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + N W+P +VP+ +D+ W LT DE+ + R Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWA---KLTADEQQLTIRVFTGLTLL 70 Query: 93 ESLVANNIVLAIYRHLSNP 111 +++ A+ + P Sbjct: 71 DTIQNTLGAPALIKDAITP 89 >gi|302530556|ref|ZP_07282898.1| ribonucleotide-diphosphate reductase subunit beta [Streptomyces sp. AA4] gi|302439451|gb|EFL11267.1| ribonucleotide-diphosphate reductase subunit beta [Streptomyces sp. AA4] Length = 323 Score = 74.3 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 96/267 (35%), Gaps = 17/267 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 ++ W P ++ + W + LT +++ + F + E V +I Sbjct: 29 LFVKGNKKFWNPADLDFSKEREGW---DSLTPEQQRSTTYLVAQFIAGEEAVTEDIQP-F 84 Query: 105 YRHLSNPEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 R +S YL + FEEA H F+ + ++GLD +L + E P Sbjct: 85 MRAMSATGRFGDEMYLTQFCFEEAKHVEVFRRWMDAVGLD-DDLHSYVAENPHYRK---- 139 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVGI 220 + + L + ++ + V EG TG+ + N+ + G+ Sbjct: 140 --LFYEELPQSLRALEDDPSPLNQIRASVTYNHVIEGSLALTGYYSWQLICTQNQILPGM 197 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 E ++I DE H+ +G + + +W Q++ +L A + I + + Sbjct: 198 QELVRHIGDDERRHMAWGTFTCRRHVAADDAMWDA-VQERMGELLPHALGM-IQWVQDQF 255 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQI 307 + + QY A RR I Sbjct: 256 EEVPFDNDPEELLQYAADRAQRRLGAI 282 >gi|118465897|ref|YP_884058.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium 104] gi|254777375|ref|ZP_05218891.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. avium ATCC 25291] gi|238055303|sp|A0QMC0|RIR2H_MYCA1 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|118167184|gb|ABK68081.1| ribonucleotide-diphosphate reductase beta subunit [Mycobacterium avium 104] Length = 311 Score = 73.5 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 98/263 (37%), Gaps = 22/263 (8%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D A W+ LTDDER R F + E V +I + Sbjct: 29 AKFWNPADIDFSRDRADWE---RLTDDERSYATRLCAEFIAGEESVTQDIQP-FMAAMRA 84 Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H F+ + ++G+ +L + +VPS + + Sbjct: 85 EGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGV-TDDLHHFLDDVPSYRT------IFYE 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + ++ + + EGM TG+ + + G+ E + Sbjct: 138 ELPDCLNALTIDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVRR 197 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA-HETMPKGFV 285 I DE H+ +G + + W + + M L+E +A ++ MP Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFALYDPMPFDL- 256 Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308 S +++M + +++ + G Sbjct: 257 -----SVDEFMAYASDKGMRRFG 274 >gi|41409770|ref|NP_962606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium avium subsp. paratuberculosis K-10] gi|81413257|sp|Q73TP6|RIR2H_MYCPA RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|41398602|gb|AAS06222.1| NrdB [Mycobacterium avium subsp. paratuberculosis K-10] Length = 311 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 98/263 (37%), Gaps = 22/263 (8%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D A W+ LTDDER R F + E V +I + Sbjct: 29 AKFWNPADIDFSRDRADWE---RLTDDERSYATRLCAEFIAGEESVTQDIQP-FMAAMRA 84 Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H F+ + ++G+ +L + +VPS + + Sbjct: 85 EGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGV-TDDLHHFLDDVPSYRT------IFYE 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + ++ + + EGM TG+ + + G+ E + Sbjct: 138 ELPDCLNALTIDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVRR 197 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA-HETMPKGFV 285 I DE H+ +G + + W + + M L+E +A ++ MP Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFALYDPMPFDL- 256 Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308 S +++M + +++ + G Sbjct: 257 -----SVDEFMAYASDKGMRRFG 274 >gi|145223648|ref|YP_001134326.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium gilvum PYR-GCK] gi|315443974|ref|YP_004076853.1| ribonucleotide reductase subunit beta [Mycobacterium sp. Spyr1] gi|238055306|sp|A4TB76|RIR2H_MYCGI RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|145216134|gb|ABP45538.1| putative ribonucleoside-diphosphate reductase (beta chain) [Mycobacterium gilvum PYR-GCK] gi|315262277|gb|ADT99018.1| ribonucleotide reductase, beta subunit [Mycobacterium sp. Spyr1] Length = 312 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 103/264 (39%), Gaps = 24/264 (9%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D A W+S L+ ER R F + E V +I + Sbjct: 29 AKFWDPADIDFSRDRADWES---LSTMERDWATRLCAEFIAGEEAVTQDIQP-FMAAMRA 84 Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H+ F+ + ++G+ E ++P+ + + Sbjct: 85 EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGITEDLQ-GYLDDLPAYR------QMFYE 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + T + Q ++ + V EGM TG+ + + + G+ E + Sbjct: 138 ELPASLDALATDPSPQAQVRASVTYNHVIEGMMALTGYYAWHRICVDRHILPGMQELVRR 197 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYA-HETMPKGF 284 I DE H+ +G + + WT F+ + ++ A + A+A ++ +P G Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWT-VFEDRMNELIPLALQNTDDAFALYDEIPFGL 256 Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308 E++ Q+ A++ + G Sbjct: 257 T------IEEFQQYAADKGMRRFG 274 >gi|254823272|ref|ZP_05228273.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium intracellulare ATCC 13950] Length = 313 Score = 73.5 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 99/263 (37%), Gaps = 22/263 (8%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D W+ LT+DER R F + E V +I + Sbjct: 29 AKFWNPADIDFSRDREDWE---RLTEDERSYATRLCAEFIAGEESVTQDIQP-FMAAMRA 84 Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H F+ + ++G+ E + +VP+ + + Sbjct: 85 EGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGITEDLHY-FLDDVPTYRT------IFYE 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + + ++ + + EGM TG+ + + G+ E + Sbjct: 138 ELPACLNALTLDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVRR 197 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA-HETMPKGFV 285 I DE H+ +G + + W + + M L+E +A ++ MP G Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFALYDPMPFGL- 256 Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308 S +++MQ+ +++ + G Sbjct: 257 -----SVDEFMQYASDKGMRRFG 274 >gi|284176152|ref|YP_003406429.1| Ribonucleotide reductase beta subunit-like protein [Haloterrigena turkmenica DSM 5511] gi|284017809|gb|ADB63756.1| Ribonucleotide reductase beta subunit-like protein [Haloterrigena turkmenica DSM 5511] Length = 302 Score = 73.1 bits (178), Expect = 6e-11, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 85/227 (37%), Gaps = 11/227 (4%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y +A HW P E+ ++ D + L D +K++L F + E V ++ + Sbjct: 22 YYRNAVEKHWDPHEIDLEADR---EGATDLPDPAFEGLKQSLALFGAGEESVTEDLAP-L 77 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW-AL 163 L + E + ++ Q +EE+ H+ F + E E P+ N Sbjct: 78 AVVLEDIEDQLFITTQLYEESKHTDFFDRYWREVIHAEEERRGQELSSPADEKWFNEPYD 137 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-QILSLGRAN----KMV 218 + + +D + + +++ EG+ TG+ L+ G + Sbjct: 138 ELFERNERAMVQLLEEDTPKNRAKAHCHYHLTIEGILAQTGYYGLTLAYGEQEPDLPDLP 197 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 G+ E + + DE H+ FG+ + + I+ + + ++ Sbjct: 198 GLVEGLKLVRSDEGRHVGFGMAQLKSLVIDG-EVDPDVLRDTVDELV 243 >gi|168702485|ref|ZP_02734762.1| ribonucleotide-diphosphate reductase small chain [Gemmata obscuriglobus UQM 2246] Length = 70 Score = 73.1 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343 GL+ Y ++ A+RR +G+ P+F T+NPF +M + D+++ NFFE RV+ Y Sbjct: 1 MAGLSCRDLRSYPEYAADRRLESLGIAPVFG-TKNPFGFMD-LQDVQELTNFFERRVSAY 58 Query: 344 QQG 346 Q G Sbjct: 59 QLG 61 >gi|169631086|ref|YP_001704735.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium abscessus ATCC 19977] gi|238055304|sp|B1MHK0|RIR2H_MYCA9 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|169243053|emb|CAM64081.1| Ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium abscessus] Length = 313 Score = 73.1 bits (178), Expect = 7e-11, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 93/262 (35%), Gaps = 19/262 (7%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P + D A W+S LT+ ER R F + E V +I + Sbjct: 29 AKFWDPAGIDFSRDRADWES---LTERERDYATRLCAQFIAGEESVTQDIQP-FMSAMRA 84 Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H+ F+ + ++G+ E L ++P+ + Sbjct: 85 EGRLGDEMYLTQFAFEEAKHTQVFRLWLDAVGVSED-LHGYLDDLPAYRE------IFFD 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + ++ + V EGM TG+ + + G+ E Sbjct: 138 RLPDALGMLAADPSPAAQVRASVTYNHVVEGMLALTGYFAWHKICVDRGILPGMQELVHR 197 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 I DE H+ +G + + W+ F+ + ++ A L E Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANWS-VFEARMNELIPIALRL-TEEGFELYGDDTPF 255 Query: 287 LNAPSCEQYMQFIANRRCHQIG 308 S +++MQ+ A++ + G Sbjct: 256 --GLSLDEFMQYSADKGMRRFG 275 >gi|118470345|ref|YP_884771.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium smegmatis str. MC2 155] gi|238055307|sp|A0QPD3|RIR2H_MYCS2 RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|118171632|gb|ABK72528.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium smegmatis str. MC2 155] Length = 320 Score = 72.7 bits (177), Expect = 8e-11, Method: Composition-based stats. Identities = 50/262 (19%), Positives = 98/262 (37%), Gaps = 19/262 (7%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D A W+ LT+ ER R F + E V +I + Sbjct: 29 AKFWDPADIDFSRDRADWE---ALTEREREYATRLCAEFIAGEEAVTKDIQP-FMSAMRA 84 Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H+ F+ + ++G+ +L ++ EVP+ + + + Sbjct: 85 EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGV-TDDLHSLIEEVPA------YVQIFCE 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + + + ++ V+ V EGM TG+ + + G+ E + Sbjct: 138 ELPAALEALTSDPSPAAQVRASVVYNHVVEGMLALTGYYAWHRICVDRGILPGMQELVRR 197 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286 I DE H+ +G + + W F+ ++ A L + + Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANW-AVFETHMNELIPVALRLTQE--GFALYGDDIP 254 Query: 287 LNAPSCEQYMQFIANRRCHQIG 308 +++Q+ ++R + G Sbjct: 255 FGLEE-GEFLQYSSDRGMRRFG 275 >gi|70607921|ref|YP_256791.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus acidocaldarius DSM 639] gi|68568569|gb|AAY81498.1| ribonucleotide reductase, small chain [Sulfolobus acidocaldarius DSM 639] Length = 330 Score = 72.7 bits (177), Expect = 9e-11, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 94/260 (36%), Gaps = 21/260 (8%) Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71 E ++ + + D N P++ EK+ W E+ D WK Sbjct: 10 TKEGKILHNKFKSTVEGLDWNT-FPMRLFEIGEKF------RWTAYELDFSKDREDWK-- 60 Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVL--AIYRHLSNPECRQYLLRQAFEEAVHSH 129 L +R K +F + E VA +I+ L E YL + A +EA H+ Sbjct: 61 -KLKPSDRTQNKIISSYFLAGEECVARDILPLANAMEELGLIEEALYLTQFARDEANHTV 119 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 F+ S+G EG Y+ P + + + + + + ++ + Sbjct: 120 AFRKWFESVGETEGIYDFTYKNEPYRR-------LFYEIIPTDMRRLYNDPSPENIVRAV 172 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 + V EG+ TG+ + + G+ + + I RDE+ H++FG V + Sbjct: 173 VSYNFVAEGILAETGYYGYVKGYEKILPALPGLYKMVKLITRDEARHISFGAYVAALMIS 232 Query: 248 ENPHLWTKEFQQKSRTMLHE 267 + EF + + E Sbjct: 233 MHGDSVLNEFNRYFGQLTQE 252 >gi|46309416|ref|YP_006306.1| ORF38 [Agrotis segetum granulovirus] gi|46200633|gb|AAS82700.1| ORF38 [Agrotis segetum granulovirus] Length = 369 Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 83/258 (32%), Gaps = 16/258 (6%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74 R+ D N+ + V ++ P Y +W Y N+W TE + L L Sbjct: 19 PRLEEDLPEYNNSETLVLKIWPPTYAPSWHYYQLHQANYWSATE---HEPLEDVSGFIKL 75 Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR-QAFEEAVHSHTFQY 133 + + + A + V I EC Q++ + Q E +H + Sbjct: 76 DSQWQKAVLHSFAILAIGDDAVMQFIDENDLEW---EECTQWMFKDQGARETIHKIVYNK 132 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 ++ D F + + N+ L L + + + +F Sbjct: 133 MLH--LADHSSEFTT--SMLTSKKYINYILHNNSDLKLQKYKLEDEVMKKAAFLIKMIFC 188 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253 E F T F I +G + + +M+DE +H + + +K ++ + Sbjct: 189 ---ERYLFATPFLVINLMGESGFLNNCVRINMQVMKDEHVHYLHAVQLFRDLKPKSDQI- 244 Query: 254 TKEFQQKSRTMLHEATLL 271 E + M E + Sbjct: 245 -DEINKLFFDMAQEFVEI 261 >gi|207108882|ref|ZP_03243044.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter pylori HPKX_438_CA4C1] Length = 79 Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE-KN 334 +GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++ N Sbjct: 2 GDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYGV-QHPIKWVESFSSFNEQRSN 60 Query: 335 FFETRVTEYQQGAELKWD 352 FFE RV+ Y +G+ D Sbjct: 61 FFEARVSNYAKGSVSFDD 78 >gi|300790300|ref|YP_003770591.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis mediterranei U32] gi|299799814|gb|ADJ50189.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis mediterranei U32] Length = 322 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 93/267 (34%), Gaps = 17/267 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 ++ W P ++ + W + L +++ + F + E V +I Sbjct: 29 LFVKGNKKFWNPADIDFSREREGWDT---LNPEQQRSTTYLVAQFIAGEEAVTEDIQP-F 84 Query: 105 YRHLSNPEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 R +S YL + FEEA H+ F+ + ++GL E P + ++ Sbjct: 85 MRAMSATGRFGDEMYLTQFCFEEAKHTEVFRRWMDAVGLTEDL-------HPFVAENPHY 137 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ-ILSLGRANKMVGI 220 + + L + ++ + V EG TG+ L + + + G+ Sbjct: 138 RKLFYEELPQSLRALEDDPSPLNQIRASVTYNHVIEGSLALTGYYSWQLICTQHDILPGM 197 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280 E + I DE H+ +G + + LW Q+ +L A + I + + Sbjct: 198 QELVRRIGDDERRHMAWGTFTCRRHVAADDSLWDAVL-QRMGELLPHALNM-IQWVQDQF 255 Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQI 307 + + QY A RR I Sbjct: 256 EELPFDNDPQEIVQYAADRAQRRLGAI 282 >gi|171779438|ref|ZP_02920402.1| hypothetical protein STRINF_01283 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282055|gb|EDT47486.1| hypothetical protein STRINF_01283 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 317 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 91/278 (32%), Gaps = 23/278 (8%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A + W+ T +P+++D W L +E+ +KR L + + + + + Sbjct: 25 WERATSLFWLDTRIPIENDFTNW---VKLNLEEQEQLKRLLILLTNLSTNQSIEVGEIVR 81 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163 + + L F E V++ + I+ + + + F + N Sbjct: 82 NGKCSQQEVAILNNIQFIEMVNTKAYNRILLTFDKEINLKKSFEWVDNESRVLEYLNDIN 141 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + + L + EG+ Y A + L + + Sbjct: 142 TVYR---------------ESSLVKKRFIALCIEGLLNYAYLAYLFELWINKEFNNLGSM 186 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + I+R+ESLH + I + E+ + F+ ++ L I + Sbjct: 187 LEMIIRNESLHCFYFSHKIKLLLKESDLQEVERFKAWGYETVNHFVKLGINLIGDFY--- 243 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 ++ + + + AN IGL+ F + Sbjct: 244 YLKESKIIAKNLILQEANNILMGIGLKEQFNFNAEVLK 281 >gi|296169397|ref|ZP_06851020.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895947|gb|EFG75639.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 313 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 91/258 (35%), Gaps = 16/258 (6%) Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113 W P + D A W+ L+D ER+ + R F + E V +I + Sbjct: 32 WDPANIDFSRDSADWE---ALSDRERVYVTRLCAGFIAGEEAVTQDIQP-FMAAMRAEGR 87 Query: 114 ---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 YL + AFEEA H+ F+ + ++G+ +L + + P+ + + L Sbjct: 88 LGDEMYLTQFAFEEAKHTQAFRLWLDAVGV-RDDLHSFLDQTPAYRQLFD------EELH 140 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMR 229 T + ++ + + EGM TG+ + + G+ + ++I Sbjct: 141 ESLNTLYVDPSPAAQVRASVTYNHIIEGMLALTGYYAWHKICVEHGILPGMQQLIRHIGD 200 Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289 DE H+ +G + + WT F+ + ++ L + L+ Sbjct: 201 DERRHMAWGTFTCRRHVAADDTNWT-VFETRMNELIPLGQRLIDEGSALYGDDIPFNLSI 259 Query: 290 PSCEQYMQFIANRRCHQI 307 Y RR I Sbjct: 260 DEMRTYATDKGMRRFSTI 277 >gi|323508655|dbj|BAJ77221.1| cgd6_700 [Cryptosporidium parvum] Length = 285 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 32/239 (13%), Positives = 72/239 (30%), Gaps = 26/239 (10%) Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE-------------LF 146 + + + PE R Y E ++ F + + ++ + Sbjct: 38 LTCELLGQVQVPEARGYFSFTMCMENIYKELFMNYVEMIRKNKEKIERTDEVEKKDENNL 97 Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206 N L + + G + + ++YV+ + ++ + Sbjct: 98 NSKISKEEYEYNLEKKLNELEDFTKMKELVGNFYDEDTLFSEKLIYYVIIKKIFSSSIHL 157 Query: 207 QILSLGRAN-----KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 LS N + + I RDE + F + + +K TK + Sbjct: 158 LRLSFSMRNISESELPTQLCDGLDRIRRDEQYQVEFCLSIAKSMK-------TKPSNDQV 210 Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320 +L +A +LE + + + + ++ F A+ + F + NPF Sbjct: 211 VNLLEQAIMLEKNFIFSIVDPQVLQIEREDIVAFLLFNADEILVDLKYPRQFNVS-NPF 268 >gi|300710888|ref|YP_003736702.1| Ribonucleotide reductase beta subunit-like protein [Halalkalicoccus jeotgali B3] gi|299124571|gb|ADJ14910.1| Ribonucleotide reductase beta subunit-like protein [Halalkalicoccus jeotgali B3] Length = 297 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 77/202 (38%), Gaps = 16/202 (7%) Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112 HW P E+ + D + + L ++R L F + E+ V ++ + L E Sbjct: 28 HWDPAEIDLSVDR---ERLSQLDGATFTDLRRTLALFGAGEAAVTEDLAP-LAVVLEGIE 83 Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL--- 169 + ++ Q +EEA H+ F ++ E + R P W + L Sbjct: 84 DQMFVTTQLYEEAKHADFFDRYWRAVIHPAEEDRGLERTSPLDDR---WFFEAYHDLFER 140 Query: 170 -SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-----LGRANKMVGIAEQ 223 +D + + L +++ EG+ TG+ + + + + G+ + Sbjct: 141 NERAMDRVLKEDTPENRARALCHYHLTIEGVIAQTGYYAVQTSYSGEIPELPLLPGLVDG 200 Query: 224 YQYIMRDESLHLNFGIDVINQI 245 + I DE H+ FG+ + ++ Sbjct: 201 FTEIRGDEGRHVGFGMAKLKEL 222 >gi|121729792|ref|ZP_01682228.1| conserved hypothetical protein [Vibrio cholerae V52] gi|121628467|gb|EAX60957.1| conserved hypothetical protein [Vibrio cholerae V52] Length = 107 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 3/78 (3%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 KY + + W P EV + D + L D E+ + NL + +S+ Sbjct: 33 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 89 Query: 98 NNIVLAIYRHLSNPECRQ 115 + +A+ +S PE Sbjct: 90 RSPNVALLPLVSLPELET 107 >gi|126437012|ref|YP_001072703.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. JLS] gi|238055308|sp|A3Q4Y5|RIR2H_MYCSJ RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|126236812|gb|ABO00213.1| putative ribonucleotide reductase small chain [Mycobacterium sp. JLS] Length = 312 Score = 70.8 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 102/264 (38%), Gaps = 24/264 (9%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D A W+S + L ER R F + E V +I + Sbjct: 29 AKFWDPADIDFSKDRADWESLSNL---ERDWATRLCAQFIAGEEAVTQDIQP-FMAAMRA 84 Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H+ F+ + ++G+ + ++PS + + Sbjct: 85 EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGMTDDLQ-CYLDDLPSYR------QMFYE 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + T + ++ + V EGM TG+ + + G+ E + Sbjct: 138 ELPASLEALATDPSPAAQVRASATYNHVIEGMMALTGYYAWHRICVDRKVLPGMQELVRR 197 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYA-HETMPKGF 284 I DE H+ +G + + W + F+ + ++ A + ++A ++ +P GF Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANW-EVFENRMNELIPLALSNTDDSFALYDEIPFGF 256 Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308 E++ Q+ A++ + G Sbjct: 257 AK------EEFQQYAADKGMRRFG 274 >gi|70607929|ref|YP_256799.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus acidocaldarius DSM 639] gi|68568577|gb|AAY81506.1| hypothetical protein Saci_2220 [Sulfolobus acidocaldarius DSM 639] Length = 345 Score = 70.4 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 86/219 (39%), Gaps = 14/219 (6%) Query: 45 KYLSACNNHWMPTEVP--MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102 + + W P + +Q D W++ +++ ER + + F++ E V+ + Sbjct: 34 LWAKSNELFWSPLQFKELIQQDKQDWET---MSESEREISEYIATAFSAGEEAVSRYLAE 90 Query: 103 AI--YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + L E +L + EE H+ F+ + S+G+D+ PS Sbjct: 91 LVIALDELGYTEEVLFLNQFQQEETRHTDAFRRWMDSIGMDKDTEKWTTEINPSYYE--- 147 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVG 219 + L S ++ + + L+ + EG+ TGF ++ + + G Sbjct: 148 ---LFYVALPSAAYGVKANPSPESILRFTATYMFSIEGIAAETGFYFWRTMWERGRHLKG 204 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 I E + + DES HL FG + + E+ L+ K + Sbjct: 205 IYEIVKRVAADESRHLAFGTYLTTMLIGEDQSLYDKFLE 243 >gi|209523560|ref|ZP_03272114.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima CS-328] gi|209495965|gb|EDZ96266.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima CS-328] Length = 107 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 6/113 (5%) Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176 + Q +E +H+ ++QY+I ++ E R + + L+ + + Sbjct: 1 MAEQISQEGMHNQSYQYMIETIIPSER------RNYVYDFWRTDKVLRDRCEFIAGLYQE 54 Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229 D E + + EGM+FY GF +L M G A+ ++ I R Sbjct: 55 YVDDPTPENYFVSLMADYLLEGMYFYNGFIFFYNLASRMLMPGSADIFKMINR 107 >gi|146322251|ref|YP_001174720.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis] gi|145968742|gb|ABQ00020.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis] Length = 317 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 92/278 (33%), Gaps = 23/278 (8%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A + W+ T +P+++D W N + + L ++++S+ IV Sbjct: 25 WERATSLFWLDTRIPIENDFTNWIKLNLEEQGQLKCLLILLTNLSTNQSIEVGEIVRN-- 82 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163 S E L F E V++ + I+ + + + F + N Sbjct: 83 GKCSQQEV-AILNNIQFIEMVNTKAYNRILLTFDKEINLEKSFEWVDNDSRVLEYLNDIN 141 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + + L + EG+ Y + + L + + Sbjct: 142 TVYR---------------ESSLIKKRFIALCVEGLLNYAYLSHLFELWINKEFNNLGTM 186 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + I+R+ESLH + + + E+ + F+ S ++ L + + Sbjct: 187 LEMIIRNESLHCFYFSHKVKLLLKESDPKEVERFKAWSYETVNHFVKLGLNIIDDFY--- 243 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321 ++ + + + AN IGL+ F + + Sbjct: 244 YLKESKKIAKNLILQEANNILMGIGLKEQFGFNDEVLK 281 >gi|108801178|ref|YP_641375.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. MCS] gi|119870310|ref|YP_940262.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium sp. KMS] gi|123069734|sp|Q1B465|RIR2H_MYCSS RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|238055309|sp|A1UKW4|RIR2H_MYCSK RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|108771597|gb|ABG10319.1| putative ribonucleoside-diphosphate reductase (beta chain) NrdB (ribonucleotide reductase small chain) [Mycobacterium sp. MCS] gi|119696399|gb|ABL93472.1| putative ribonucleoside-diphosphate reductase [Mycobacterium sp. KMS] Length = 312 Score = 70.0 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 102/264 (38%), Gaps = 24/264 (9%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D A W+S + L ER R F + E V +I + Sbjct: 29 AKFWDPADIDFSRDRADWESLSNL---ERDWATRLCAQFIAGEEAVTQDIQP-FMAAMRA 84 Query: 111 PEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H+ F+ + ++G+ + ++PS + + Sbjct: 85 EGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGMTDDLQ-CYLDDLPSYR------QMFYE 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQY 226 L + T + ++ + V EGM TG+ + + G+ E + Sbjct: 138 ELPASLEALATDPSPAAQVRASATYNHVIEGMMALTGYYAWHRICVDRKVLPGMQELVRR 197 Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL-EIAYA-HETMPKGF 284 I DE H+ +G + + W + F+ + ++ A + ++A ++ +P GF Sbjct: 198 IGDDERRHMAWGTFTCRRHVAADDANW-EVFENRMNELIPLALSNTDDSFALYDEIPFGF 256 Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308 E++ Q+ A++ + G Sbjct: 257 AK------EEFQQYAADKGMRRFG 274 >gi|325003309|ref|ZP_08124421.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia sp. P1] Length = 326 Score = 69.3 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 79/223 (35%), Gaps = 19/223 (8%) Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94 P++ + HW P+ + D + +TDDER F + E Sbjct: 29 FPMR------LFSKGNGKHWDPSAIDFTQDAEDFA---AMTDDERWQTCALAAQFMAGEE 79 Query: 95 LVANNIVLAIYRHLSNPEC--RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 V ++ + + YL + +EEA H+ F+ ++G+ G+L + Sbjct: 80 SVTQDLQPFVAAMAAEGRLGDEMYLTQFVYEEAKHTQAFRLWFDAVGM-TGDLHSYIEHN 138 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL- 211 ++ +T+ L + + L+ + V EG TG+ + Sbjct: 139 E------HYLEIFTRALPESLYALADDPSPANQLRASVTYNHVVEGTLALTGYFTWHKIC 192 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 + G+ + ++I DE H+ +G + + LW Sbjct: 193 AERGILPGMQKVIKHIGDDERRHMAWGTFTCRRHVAADDALWD 235 >gi|111023180|ref|YP_706152.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus jostii RHA1] gi|123045538|sp|Q0S392|RIR2H_RHOSR RecName: Full=R2-like ligand binding oxidase; AltName: Full=Ribonucleotide reductase R2 subunit homolog; AltName: Full=Ribonucleotide reductase small subunit homolog gi|110822710|gb|ABG97994.1| probable ribonucleoside-diphosphate reductase [Rhodococcus jostii RHA1] Length = 324 Score = 69.3 bits (168), Expect = 9e-10, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 19/268 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W PT++ D W+ GL +++ + F + E V +I Sbjct: 34 LFTKGNAKFWNPTDLDFSRDAEDWE---GLNSEQQRNSTYLVAQFIAGEEAVTEDIQP-F 89 Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + + E R YL + FEEA H+ F+ + ++GL P + Sbjct: 90 MKAM-AAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGLTRDL-------HPFVAENPY 141 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMVG 219 + + + L T + ++ + V EG TG+ + + G Sbjct: 142 YRQLFYEELPGSLKVLETDPSPVNQVRASVTYNHVIEGSLALTGYYAWQKVCTTRGILPG 201 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + E + I DE H+ +G + + W Q++ ++ A + I + ++ Sbjct: 202 MQELVRRIGDDERRHMAWGTFTCRRHVAADDSNWG-VVQERMAELMPLALGM-IDWVNKQ 259 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQI 307 GL+ Y A RR I Sbjct: 260 FEVQPYGLDDQEFIAYAADRAQRRLGAI 287 >gi|256378482|ref|YP_003102142.1| ribonucleotide reductase [Actinosynnema mirum DSM 43827] gi|255922785|gb|ACU38296.1| ribonucleotide reductase [Actinosynnema mirum DSM 43827] Length = 320 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 90/276 (32%), Gaps = 17/276 (6%) Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97 K + Y + W ++ D W++ +TD ER F +E V Sbjct: 38 KLPEYIDLYKRYFTHRWNAYDLDFSQDAVDWRT--KMTDVERKAFTEIAAAFHHAERQVE 95 Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + I+ + E + YL Q +EA H+ F + G+ Sbjct: 96 VELP--IFMLTGSEEAKMYLCTQLEDEARHTLFFDRFYREVVGLPGDSVEELLASSFPHV 153 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANK 216 + + + + ++ +++ EG+ T L+ R Sbjct: 154 PETFVGAFGLLSYLADDLRVDPENPAKRVRYATAYFMWIEGVLALTIMKLTLTYCRTKGY 213 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY- 275 + G + RDE+ H+ FG+ + E+P L + +HE E+A Sbjct: 214 LPGYYTGFIASCRDEARHVQFGMRFLRDSVQEDPRLLHE---------IHETLRTELAMN 264 Query: 276 --AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309 A P +G + +M N + +G+ Sbjct: 265 GGASVPAPLEPLGFSEEEVVHFMIRQVNNKLSDVGI 300 >gi|221309908|ref|ZP_03591755.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|221314231|ref|ZP_03596036.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319154|ref|ZP_03600448.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. JH642] gi|221323427|ref|ZP_03604721.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus subtilis subsp. subtilis str. SMY] Length = 123 Score = 68.1 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 48/109 (44%), Gaps = 5/109 (4%) Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 + +I + KE + +L E E+ Y + + + AP ++++++ A Sbjct: 2 LAQEIYKKQTPQKQKELYAWALNLLQELYENELEYTEDVYDQVGL---APDVKKFIRYNA 58 Query: 301 NRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 N+ + +G + F+ + NP ++ + K +FF T+ Y++ Sbjct: 59 NKALNNLGFDHWFEEEDVNPIV-INGLNTKTKSHDFFSTKGNGYKKATV 106 >gi|293570202|ref|ZP_06681272.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] gi|291609715|gb|EFF38975.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus faecium E980] Length = 317 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 23/270 (8%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 + A + W+ T +P+++D W N + + L ++++S+ IV Sbjct: 25 WERATSLFWLDTRIPIENDFTNWIKLNLEEQGQLKCLLILLTNLSTNQSIEVGEIVRN-- 82 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163 S E L F E V++ + I+ + + + F + N Sbjct: 83 GKCSQQEV-AILNNIQFIEMVNTKAYNRILLTFDKEINLEKSFEWVDNDSRVLEYLNDIN 141 Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223 + + L + EG+ Y + + L + + Sbjct: 142 TVYR---------------ESSLIKKRFIALCVEGLLNYAYLSHLFELWINKEFNNLGTM 186 Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283 + I+R+ESLH + + + E+ + F+ S ++ L + + Sbjct: 187 LEMIIRNESLHCFYFSHKVKLLLKESDPKEVERFKAWSYETVNHFVKLGLNIIGDFY--- 243 Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 ++ + + + AN IGL+ F Sbjct: 244 YLKESKKIAKNLILQEANNILMGIGLKEQF 273 >gi|226365685|ref|YP_002783468.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus opacus B4] gi|226244175|dbj|BAH54523.1| hypothetical protein [Rhodococcus opacus B4] Length = 324 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 19/268 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W PT++ D W+ GL +++ + F + E V +I Sbjct: 34 LFTKGNAKFWNPTDLDFSRDAEDWE---GLNSEQQRNSTYLVAQFIAGEEAVTEDIQP-F 89 Query: 105 YRHLSNPECR----QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + + E R YL + FEEA H+ F+ + ++GL P + Sbjct: 90 MKAM-AAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGLTRDL-------HPFVADNPF 141 Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMVG 219 + + + L T + ++ + V EG TG+ + + G Sbjct: 142 YRQLFYEELPGSLKVLETDPSPANQVRASVTYNHVIEGSLALTGYYAWQKVCTTRGILPG 201 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + E + I DE H+ +G + + W Q++ ++ A + I + ++ Sbjct: 202 MQELVRRIGDDERRHMAWGTFTCRRHVAADDGNWG-VVQERMAELMPLALGM-IDWVNKQ 259 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQI 307 GL+ Y A RR I Sbjct: 260 FEVQPYGLDDQEFIAYAADRAQRRLGAI 287 >gi|270614678|ref|ZP_06221723.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae HK1212] gi|270317993|gb|EFA29282.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus influenzae HK1212] Length = 103 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 3/101 (2%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111 L + E+ + NL + +S+ + +A+ +S P Sbjct: 65 --ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIP 103 >gi|284046710|ref|YP_003397050.1| sterol-binding domain protein [Conexibacter woesei DSM 14684] gi|283950931|gb|ADB53675.1| Sterol-binding domain protein [Conexibacter woesei DSM 14684] Length = 419 Score = 67.7 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 81/232 (34%), Gaps = 13/232 (5%) Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96 + Y + ++ W TE+ D W+ + ER N F E V Sbjct: 10 ISYEDLYARWERGN---WRATEIDFTADSEQWQERFD--AFERRAALWNYSLFFHGEDAV 64 Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 A+N+ I E + +L Q +EA H+ F+ + + Sbjct: 65 ADNLSPYI-DAAPLEEQKYFLTTQQVDEARHAVFFKRFMHEVCDVGDGTMAGGLAAIQPD 123 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FAQILSLGRAN 215 + + L + + + + L +++++ E +G L + + Sbjct: 124 LTWGFRRVF-DRLDTMADELRRDRSKPKLAAALALYHLIVEATLAQSGQHFITGYLEQRD 182 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 + G + + DE H+ FG+ ++ ++ E+P E ++ +L E Sbjct: 183 VLPGFYGGMRNVEFDEQRHIGFGVKLLYDLQREDP-----ECKEAVAELLRE 229 >gi|145637995|ref|ZP_01793631.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittHH] gi|145268805|gb|EDK08772.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittHH] Length = 115 Score = 67.3 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%) Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHL--WTKEFQQKSRTMLHEATLLE 272 M G A+ ++I RDE+LHL ++N + ++P + +E +Q++ + A E Sbjct: 1 MEGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQE 60 Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIA 300 A+A G +GLN QY+++I Sbjct: 61 KAWADYLFKDGSMIGLNRDILVQYVEYIT 89 >gi|326383562|ref|ZP_08205248.1| ribonucleotide-diphosphate reductase subunit beta [Gordonia neofelifaecis NRRL B-59395] gi|326197646|gb|EGD54834.1| ribonucleotide-diphosphate reductase subunit beta [Gordonia neofelifaecis NRRL B-59395] Length = 297 Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 89/270 (32%), Gaps = 23/270 (8%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 + W P + D W GLTDD+R + F + E V +I Sbjct: 10 LFTKGNAKTWDPASIDFSQDALDWA---GLTDDQRRSATYLVSQFVAGEEAVTEDIRP-F 65 Query: 105 YRHLSNPEC---RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 +S + YL + +EA H+ F+ + ++GL E L E P Sbjct: 66 MNAMSAEDRFGDEMYLAQFCLDEAKHAQGFRLWMDAVGLTED-LHPYVAENPFYRE---- 120 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGI 220 + + L T + ++ + V EG TG+ + + + G+ Sbjct: 121 --LFYEQLPQALRILNTDPSPVNQVRASVTYNHVIEGSLALTGYYAWRRICVESEILPGM 178 Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE---IAYAH 277 + I DE+ H+ +G + + LW Q E L I + Sbjct: 179 QQLIGSIAEDETRHMAWGTFTCRRHVAADDSLW-----QVVTDRFGELVPLAMGMIKWVD 233 Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307 + G++ Y A RR H I Sbjct: 234 GQFDEAPFGIDNDVFLTYAADRAQRRLHAI 263 >gi|289583058|ref|YP_003481524.1| ribonucleotide reductase subunit beta [Natrialba magadii ATCC 43099] gi|289532611|gb|ADD06962.1| Ribonucleotide reductase beta subunit-like protein [Natrialba magadii ATCC 43099] Length = 309 Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 87/298 (29%), Gaps = 28/298 (9%) Query: 36 PLKY---GWAWEKYLS-ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91 P+ Y ++E Y W P + + D W+ ++ E+ F Sbjct: 2 PIDYSNREKSYELYRKGKREGTWDPDDYDLTQDREDWEQF---SEAEQHRFLATCSGFYD 58 Query: 92 SESLVANNIVLAIYRHLSNP---------ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142 E V + + + P + YL +Q +EEA H+ F + + Sbjct: 59 GEEDVTRTLAPYMMALDALPNDELPFDTVQEEMYLAQQVYEEAKHTDLFSRYFEEVFGTQ 118 Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202 + L + + + + + + E Sbjct: 119 NTAPYREGGYQEQGYSTDDLYDTADDLLAAVNSGDRTELVYSLGEAYLNYMGIVEAQLAR 178 Query: 203 TGFAQI--------LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254 G+ +GR + + + + +DE+ H+ G V+ Q+ I P + Sbjct: 179 GGYLSFDQMIELKATQMGRDSVLESFQQAIGKVRQDETRHIENGRWVMKQLAIAEPDIVA 238 Query: 255 KEFQQKSRTMLHEATLLEIAYAHETM----PKGFVGLNAPSCEQYMQFIANRRCHQIG 308 ++ + + L + Y + P + + +I R Q G Sbjct: 239 DVYEPRMEEYVENRLLSDPLYDDQPFEGYDPDRIGHQLVQYLQDTIDYIGAERFDQYG 296 >gi|219556030|ref|ZP_03535106.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium tuberculosis T17] gi|289568136|ref|ZP_06448363.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T17] gi|289541889|gb|EFD45538.1| ribonucleoside-diphosphate reductase subunit beta nrdB [Mycobacterium tuberculosis T17] Length = 210 Score = 66.6 bits (161), Expect = 6e-09, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 21/188 (11%) Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110 W P ++ D A W+ L+DDER R F + E V +I + Sbjct: 29 AKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMSAMRA 84 Query: 111 ---PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167 YL + AFEEA H+ F+ + ++G+ E +++R + + A + Sbjct: 85 EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISE----DLHRYLDDLPAYRQI---FYA 137 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA----NKMVGIAEQ 223 L + ++ + + EGM TG+ + R+ G+ E Sbjct: 138 ELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGY---YAWHRSVWNAQSFPGMQEL 194 Query: 224 YQYIMRDE 231 + I DE Sbjct: 195 VRRIGDDE 202 >gi|70946075|ref|XP_742789.1| ribonucleotide reductase small subunit [Plasmodium chabaudi chabaudi] gi|56521965|emb|CAH76799.1| ribonucleotide reductase small subunit, putative [Plasmodium chabaudi chabaudi] Length = 211 Score = 65.8 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 67/178 (37%), Gaps = 13/178 (7%) Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL-GRANKMV 218 + L+Y ++ +A+ F L + Y+ + F G + + S + Sbjct: 23 DQVLKYESVFKKQNWLYNEFEANIPFYNKLILLYISK--VLFNGGLSIVSSYCKENGILP 80 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 + Y I RDE L +F + N HL K + A LE + E Sbjct: 81 CLTSVYDKIQRDEYLQGDFSVMCCN-------HLNNKLKYENVLDYFKTAVDLEYNFCVE 133 Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW--MSEVIDLKKEKN 334 + + + +Q++Q++A+ + + ++ PF W S++I + KN Sbjct: 134 MLDFDSLKITKDQVKQFLQYLADTMLVNLKYSKHYN-SKYPFTWKEFSKIIVSENAKN 190 >gi|313116866|ref|YP_004037990.1| hypothetical protein Hbor_33300 [Halogeometricum borinquense DSM 11551] gi|312294818|gb|ADQ68854.1| hypothetical protein Hbor_33300 [Halogeometricum borinquense DSM 11551] Length = 317 Score = 65.4 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 86/224 (38%), Gaps = 22/224 (9%) Query: 45 KYLSACNNHWMPTE-VP---MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + +A HW P+E +P +++D + + L + + +++ + F + E V ++ Sbjct: 21 YFKNAVYRHWDPSEDIPQTLLKEDRTNLLTTDDLDEQQFDLLRSQIALFGAGEEAVTEDL 80 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + L + + + ++ Q +EEA H+ F + E P+ Sbjct: 81 AP-LALVLDDIDAQMFVASQIYEEAKHTQFFDRYWREVIRPVTEERGYEPTSPTDERY-- 137 Query: 161 WALQYTQTLSSPS---FTTGTKDADQEFLQDLFVFYVVFEGMW---FYTGFAQILSLGRA 214 ++ QY + T D + + +++V E + Y GF S R+ Sbjct: 138 FSDQYIELFDRTETAMKRLVTDDTPENRAKAFCHYHLVIESVLAQTAYYGFTARYSESRS 197 Query: 215 NK---------MVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 + G+ E YI DE H+ FG+ + + E+ Sbjct: 198 EIHNTTDAMPHLPGLLEGISYIRADEGRHVGFGMHSVRTLIHED 241 >gi|289580515|ref|YP_003478981.1| ribonucleoside-diphosphate reductase subunit beta 2 [Natrialba magadii ATCC 43099] gi|289530068|gb|ADD04419.1| ribonucleoside-diphosphate reductase, beta subunit 2 [Natrialba magadii ATCC 43099] Length = 310 Score = 65.0 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 79/217 (36%), Gaps = 11/217 (5%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI----KRNLGFFASSESLVANNI 100 Y +A HW P E+ ++ D+ + +D+ + F + E V ++ Sbjct: 20 YYRNAVERHWDPGEIELEQDVENLLAHIEASDEYDQSYWDRTLNGIAKFGAGEDAVTEDL 79 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP-SITAKA 159 + L N + + +L Q +EEA H+ F + + R P + Sbjct: 80 AP-LATVLDNIDDQLFLTTQLYEEAKHADFFDRYWREVIWTVEDELGWERSNPRNDKWFN 138 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-----LGRA 214 + ++ + D + + +++ EG+ TG+ + + Sbjct: 139 DPYVELFDRNRKAQYRLLEDDTPENRAKAYCHYHLTVEGILAQTGYYGMQTSYGGEFEEL 198 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 + G+ E + I DE H+ FG++ + ++ E Sbjct: 199 PHLPGLVEGFTKIRSDEGRHVGFGMNQLKKLIAEGVD 235 >gi|213028365|ref|ZP_03342812.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 73 Score = 65.0 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLVA 97 +++ Sbjct: 67 DTIQN 71 >gi|289606667|emb|CBI61081.1| unnamed protein product [Sordaria macrospora] Length = 59 Score = 64.6 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 Q P +Y WA++ + HWMP EVP+ +D W LT ER ++ + Sbjct: 7 RKQYKPFEYPWAFDFWKRQQQIHWMPEEVPLGEDCRDWAQ--KLTPHERNLLTQI 59 >gi|260662380|ref|ZP_05863275.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum 28-3-CHN] gi|260553071|gb|EEX26014.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum 28-3-CHN] Length = 306 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 14/185 (7%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 +L NN W+ T VP+ DD W LT ++ + L A + + ++ Sbjct: 23 WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 + L F E+VH+ I L +E + A WA Sbjct: 80 AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEE-----------TTAAYYAWANGQ 128 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 ++ + T + D + LF+ F +L + N+M+ Sbjct: 129 APLQAALTDLTKGIEGDDLMRRGLFLIADTVLCAGFDWAVLTQPALAQTNQMLKNILTGN 188 Query: 226 YIMRD 230 I RD Sbjct: 189 LIFRD 193 >gi|184156149|ref|YP_001844489.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum IFO 3956] gi|183227493|dbj|BAG28009.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum IFO 3956] Length = 306 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 14/185 (7%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 +L NN W+ T VP+ DD W LT ++ + L A + + ++ Sbjct: 23 WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 + L F E+VH+ I L +E + A WA Sbjct: 80 AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEE-----------TTAAYYAWADGQ 128 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 ++ + T + D + LF+ F +L + N+M+ Sbjct: 129 APLQAALTDLTKGIEGDDLMRRGLFLIADTVLCAGFDWAVLTQPALAQTNQMLKNILTGN 188 Query: 226 YIMRD 230 I RD Sbjct: 189 LIFRD 193 >gi|213621399|ref|ZP_03374182.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 70 Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 ++ E + +N W+P +VP+ +D+ W++ L+ E+ + R Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66 Query: 93 ESLV 96 +++ Sbjct: 67 DTIQ 70 >gi|227515316|ref|ZP_03945365.1| ribonucleoside-diphosphate reductase, subunit beta [Lactobacillus fermentum ATCC 14931] gi|227086330|gb|EEI21642.1| ribonucleoside-diphosphate reductase, subunit beta [Lactobacillus fermentum ATCC 14931] Length = 306 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 64/218 (29%), Gaps = 20/218 (9%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 +L NN W+ T VP+ DD W LT ++ + L A + + ++ Sbjct: 23 WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 + L F E+VH+ I L +E + A A+ Sbjct: 80 AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEE--------TTAAYYAWADGQAPL 131 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 L + D + L + + GF ++ + + + Sbjct: 132 QAALIDLTKGIEGDDLMRRGLFLIADTVLC-------AGF--DWAVLTQPALAQTNQMLK 182 Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 I+ + ++ Q E P + + Sbjct: 183 NILTGNLIFRDYLAYKFRQGIAELPFAKQEALVAQLTK 220 >gi|299783626|gb|ADJ41624.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus fermentum CECT 5716] Length = 306 Score = 63.9 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 14/185 (7%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105 +L NN W+ T VP+ DD W LT ++ + L A + + ++ Sbjct: 23 WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79 Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165 + L F E+VH+ I L +E + A WA Sbjct: 80 AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEE-----------TTAAYYAWADGQ 128 Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225 ++ T + D + LF+ F +L + N+M+ Sbjct: 129 APLQAALXDLTKGIEGDDLMRRGLFLIADTVLCAGFDWAVLTQPALAQTNQMLKNILTGN 188 Query: 226 YIMRD 230 I RD Sbjct: 189 LIFRD 193 >gi|76803161|ref|YP_331256.1| ribonucleoside-diphosphate reductase, beta subunit 2 [Natronomonas pharaonis DSM 2160] gi|76559026|emb|CAI50624.1| probable ribonucleoside-diphosphate reductase, beta subunit 2 [Natronomonas pharaonis DSM 2160] Length = 306 Score = 63.5 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 99/275 (36%), Gaps = 18/275 (6%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD-ERLM--IKRNLGFFASSESLVANNIV 101 Y +A HW P ++ + D K+ TD E + ++ + F + E V ++ Sbjct: 20 YYRNAVERHWDPHDIELDTDRENLKAFLDSTDTPETYLDGLRSGVARFGAGEQAVTEDLA 79 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + L + + + ++ Q +EEA H+ F + + + P+ N Sbjct: 80 P-LATALGSIDDQMFVTTQIYEEAKHTDFFDRYWREVIHPVEDALGLDPSSPTDETWFND 138 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFV-FYVVFEGMWFYTGFAQILSLGRANK---- 216 A + + + E + +++V EG+ TG+ + A+ Sbjct: 139 AYEELFDRNEEAMERLLAAPTAEQFAKAYCHYHLVIEGILAQTGYYGMQQSYSADSYPEL 198 Query: 217 --MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 + G+ + + I +DE H+ FG+ + + + K Q ++ E L Sbjct: 199 PHLPGLCDGFTKIRQDEGRHVGFGMAKLKALVGDG-----KVDPQLLDDIVGELLPLVDD 253 Query: 275 YAHETMPKGF--VGLNAPSCEQYMQFIANRRCHQI 307 + + F VG+ E + R QI Sbjct: 254 ITTDVGDESFDDVGIPPEELEAFAAEKHTERMEQI 288 >gi|328553050|gb|AEB23542.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus amyloliquefaciens TA208] Length = 93 Score = 63.1 bits (152), Expect = 6e-08, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPW 322 ML E E+ Y + + + AP ++++++ AN+ + +G + F+ + NP Sbjct: 1 MLQELYENELEYTEDVYDQVGL---APDVKKFIRYNANKALNNLGFDHWFEEEDVNPIV- 56 Query: 323 MSEVIDLKKEKNFFETRVTEYQQGAE 348 ++ + K +FF + Y++ Sbjct: 57 INGLSTKTKSHDFFSMKGVGYKKATV 82 >gi|9631114|ref|NP_047784.1| ribonucleotide reductase small subunit homolog [Lymantria dispar MNPV] gi|3822382|gb|AAC70333.1| ribonucleotide reductase small subunit homolog [Lymantria dispar MNPV] Length = 359 Score = 62.7 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 75/245 (30%), Gaps = 20/245 (8%) Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85 + Q+ P KYG +W Y N+W E DD+ + L + + R+ Sbjct: 28 GPTGNALQIWPPKYGLSWSFYKDHQANYWSAEEHDPLDDINGF---VKLPREWQNAALRS 84 Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 A + V I + + E Q E VH + ++ + Sbjct: 85 FAVLAIGDDAVMKFIDESGLEWEESTE--WLFKDQGARETVHKIVYNKMLQLANHSRDYV 142 Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205 N + + + Y LS + + FL + E F F Sbjct: 143 MNSFTS--------DDFVSYM--LSGETLEFRSDLRKACFLIKMIFC----ERYLFAVPF 188 Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 I LG N + + +M+DE LH + ++N IK E + Sbjct: 189 LIINILGETNAINTCVKINMQVMKDEHLHYLHAVALLNDIKGGR-EAEIAELFCRVGEQF 247 Query: 266 HEATL 270 + Sbjct: 248 VKIVE 252 >gi|329575047|gb|EGG56599.1| hypothetical protein HMPREF9520_01787 [Enterococcus faecalis TX1467] Length = 116 Score = 62.7 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 7/89 (7%) Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312 + + +L+E E Y E +G + ++++ AN+ +G++PL Sbjct: 7 EQDKLKDWMYNLLYELYENEERYTEELYDD--LGWT-EEVKTFLRYNANKALMNLGMDPL 63 Query: 313 FKYTE---NPFPWMSEVIDLKKEKNFFET 338 F T NP M+ + +FF Sbjct: 64 FADTANDVNPIV-MNGISTGTSNHDFFSQ 91 >gi|213852447|ref|ZP_03381979.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 105 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 6/99 (6%) Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314 +E + + +L E EI Y + + ++ + AN+ +G E LF Sbjct: 2 EELKLFALDLLMELYDNEICYTEALYAE---TGWVNDVKAFLCYNANKALMNLGYEALFP 58 Query: 315 ---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 NP + + + +FF + Y G ++ Sbjct: 59 PEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVE 97 >gi|257388581|ref|YP_003178354.1| ribonucleoside-diphosphate reductase subunit beta 2 [Halomicrobium mukohataei DSM 12286] gi|257170888|gb|ACV48647.1| ribonucleoside-diphosphate reductase, beta subunit 2 [Halomicrobium mukohataei DSM 12286] Length = 300 Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 85/260 (32%), Gaps = 19/260 (7%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y +A HW P + + DD + ++ + F + E V ++ + Sbjct: 20 YYRNAVERHWDPAAIDLDDDR---EPLVEAHPATFDHLRSTVAKFGAGERAVTEDLAP-L 75 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164 L + + YL Q +EEA H F+ T++ ++ P+ N A Sbjct: 76 SVVLDDAADQAYLSTQLYEEARHLDFFERYWTAVINPVERERDLPVSSPTEDRWVNDAYD 135 Query: 165 YTQTLSSPSFTTGTKDADQEF-LQDLFVFYVVFEGMWFYTGFAQILSLGRANK-----MV 218 + + D E L +++ EG+ T + + ++ + Sbjct: 136 ELLARTDAAMHRLLDDDTPEHRAIALCHYHLTIEGILAQTAYWGLQQSYGPSEPDLPTLP 195 Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278 G + I DE H+ FG+ + ++ E Q + E L + Sbjct: 196 GFTTGLERIRSDEGRHVGFGMSKLRELVAEGVD------PQLLHDTVTELLGLVQQTTTD 249 Query: 279 TMPKGFVGL---NAPSCEQY 295 + G +A + Y Sbjct: 250 GLGDGSEETPGPSADDLQNY 269 >gi|289811146|ref|ZP_06541775.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 68 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168 S PE ++ AF E +HS ++ +II ++ D +F+ I +A Y Sbjct: 1 SIPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDE 60 Query: 169 LSSPS 173 L + Sbjct: 61 LIEMT 65 >gi|328480213|gb|EGF49140.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus MTCC 5462] Length = 87 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 29/70 (41%) Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 V E FY+GF L NK+ +AE + I+RDES+H + E P Sbjct: 18 ASVFLETFLFYSGFFTPLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPE 77 Query: 252 LWTKEFQQKS 261 ++ Q Sbjct: 78 AEQQQLQDWM 87 >gi|327197769|ref|YP_004301467.1| gp134 [Brochothrix phage A9] gi|299810369|gb|ADJ53168.1| gp134 [Brochothrix phage A9] Length = 132 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 7/106 (6%) Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303 + E E Q + +L++ E+ Y + +G A + ++++ N+ Sbjct: 1 MLTREYTQKQRDELQTFAIELLYKLYTNEMKYTEYLYDE--IGWTA-DVKAFVRYNLNKA 57 Query: 304 CHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 +G++ ++ NP M+ + +FF Y G Sbjct: 58 LANLGMDAIYPERAQDVNPIV-MTGLSTESSNHDFFSQVGNSYIMG 102 >gi|148688624|gb|EDL20571.1| mCG140327 [Mus musculus] Length = 65 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 +F+A+ ++G +F ENPF +M E I L+ + NFFE RV EYQ+ + Sbjct: 1 EFVADMLMLELGFNKIF-RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 52 >gi|60416888|emb|CAD71206.1| ribonucleoside-diphospate reductase small subunit [Bacillus subtilis] Length = 98 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%) Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104 Y W+P E+ + DL WK L +E+ + L ++ N + + Sbjct: 26 FYNQNVKQFWLPEEIALNGDLLTWKY---LGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 82 Query: 105 YRHLSNPECRQYLLRQ 120 H+ + + L Sbjct: 83 AEHVDGHQRKAVLNFM 98 >gi|256389757|ref|YP_003111321.1| hypothetical protein Caci_0537 [Catenulispora acidiphila DSM 44928] gi|256355983|gb|ACU69480.1| hypothetical protein Caci_0537 [Catenulispora acidiphila DSM 44928] Length = 353 Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 77/196 (39%), Gaps = 8/196 (4%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 + Y + W + + D + L R I L ES V + A Sbjct: 50 DLYNRWESRQWSVAGLDLARDRRRFA---ELRPFARREILSALAELEIGESCVTRTL-SA 105 Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWAL 163 + H + R YL Q +EA H FQ ++ + E ++ ++ + + Sbjct: 106 LADHAPDEADRLYLCTQMADEARHVRFFQSYLSDVAGIAAEQL---EPHGAMGGESGFGV 162 Query: 164 QYTQTLSSPSFTTGTKDADQEFL-QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 Y L+ + T+ D+ + ++++ EG+ G + +L ++ ++ ++E Sbjct: 163 VYDPLLTRHTAAVRTRPDDRRVWHVAVVSYHLLAEGLLAVAGLRALRALAKSCELTALSE 222 Query: 223 QYQYIMRDESLHLNFG 238 ++RDE+ H+ FG Sbjct: 223 GLANVVRDEARHVTFG 238 >gi|9629972|ref|NP_046190.1| ribonucleotide reductase small subunit [Orgyia pseudotsugata MNPV] gi|1911280|gb|AAC59033.1| ribonucleotide reductase small subunit [Orgyia pseudotsugata MNPV] Length = 349 Score = 60.4 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 80/249 (32%), Gaps = 19/249 (7%) Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81 + A + Q+ P KYG ++ Y N+W E DD+ + L + + Sbjct: 28 EPHNEATGNALQIWPPKYGLSYAFYKDHQANYWSAEEHDPLDDINGF---VKLPREWQNA 84 Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 + R+ A + V I + + + E Q E VH + ++ Sbjct: 85 VLRSFAVLAIGDDAVMKFIDESGLKWEESTE--WLFKDQGARETVHKIVYNKML------ 136 Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201 +L N + + ++ + Y L + + FL + E F Sbjct: 137 --QLANYSTDYVMSSFTSDDFVSYM--LGGEALEFYSDHRKACFLIKMIFC----ERYLF 188 Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261 F I LG N + + +M+DE +H + ++N IK E Sbjct: 189 AVPFLIINILGETNAINTCVKINMQVMKDEHVHYLHAVALLNDIKESANTTAINELFCHI 248 Query: 262 RTMLHEATL 270 + Sbjct: 249 GDQFVKIVE 257 >gi|15211865|emb|CAC51101.1| ribonucleotide reductase small subunit [Bacillus sp. M1918] Length = 86 Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 9/87 (10%) Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 + KA + +++ K D L V V E FY+GF L Sbjct: 4 LQKKARTIVSVYKSI---------KKNDDISLFKGMVASVFLESFLFYSGFYYPLYFYGQ 54 Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDV 241 K++ E I+RDE++H + + Sbjct: 55 GKLMQSGEIVNLIIRDEAIHGVYVGLL 81 >gi|15211879|emb|CAC51109.1| ribonucleotide reductase small subunit [Bacillus sp. BSG40] Length = 86 Score = 60.4 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 29/73 (39%) Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232 S + D L V V E FY+GF L K++ E I+RDE+ Sbjct: 13 SIYKAVEKNDDISLFKAMVASVFLESFLFYSGFYYPLYFYGQGKLMQSGEIVNLIIRDEA 72 Query: 233 LHLNFGIDVINQI 245 +H + + +I Sbjct: 73 IHGVYVGLLAQEI 85 >gi|47830|emb|CAA36920.1| unnamed protein product [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 101 Score = 59.6 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%) Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP 319 +L E EI Y + + ++ + AN+ +G E LF NP Sbjct: 6 DLLMELYDNEIRYTEALYAE---TGWVNDVKAFLCYNANKALMNLGYEALFPPEMADVNP 62 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + + + +FF + Y G ++ Sbjct: 63 AILAALSPNADENHDFFSGSGSSYVMGKTVE 93 >gi|262204313|ref|YP_003275521.1| ribonucleotide reductase subunit beta-like protein [Gordonia bronchialis DSM 43247] gi|262087660|gb|ACY23628.1| Ribonucleotide reductase beta subunit-like protein [Gordonia bronchialis DSM 43247] Length = 324 Score = 59.6 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 87/272 (31%), Gaps = 23/272 (8%) Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103 +++ W P + D W+ + DDER + + + E V + Sbjct: 36 HLFVTGNARFWDPRGIDFSTDALDWR---EMRDDERRFVTYLVAQICAGEEAVTRD---- 88 Query: 104 IYRHLSNPEC------RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157 + YL + AFE+A H+ F+ + + GL +L + P Sbjct: 89 VQPFGQAAAADGRLGDEMYLSQVAFEKAKHTEVFRLWMDAAGL-VDDLNPVLDTNPFYRQ 147 Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANK 216 + L + T + + ++ + F+ V G TG + + Sbjct: 148 LI------VEELPAALRRMETDPSPENQIRAVITFHQVIGGTLACTGHRMLQRICSAYGI 201 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 + G+ + I DE H+ +G ++ + L + S M ++ + Sbjct: 202 LPGMRTLIRMISTDERRHMAWGTYTCRRLVAADDALADVAVTRMSELMPLALGMI--NWL 259 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308 L+ Y + RR IG Sbjct: 260 DGEFAPLPFDLSTAEFIAYAADRSRRRLDAIG 291 >gi|309806472|ref|ZP_07700477.1| hypothetical protein HMPREF9212_1388 [Lactobacillus iners LactinV 03V1-b] gi|308167145|gb|EFO69319.1| hypothetical protein HMPREF9212_1388 [Lactobacillus iners LactinV 03V1-b] Length = 103 Score = 59.6 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + N++ K W N W+P ++P+ +DL W N L+ D + +I R Sbjct: 28 NWNKIDDDKDLEVWN---RVTQNFWLPEKIPVSNDLPSW---NSLSKDWQQLITRTFTGL 81 Query: 90 ASSESLVA 97 +++ A Sbjct: 82 TLLDTIQA 89 >gi|325002633|ref|ZP_08123745.1| ribonucleotide reductase [Pseudonocardia sp. P1] Length = 255 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 92/271 (33%), Gaps = 27/271 (9%) Query: 43 WEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 ++ +++ + W TE+ +D A W LT+ E + + F +E+ VA + Sbjct: 7 YDHFVTLAASLQWDETEIDFSEDRAAW---PALTEWEHERVLGLIAGFCIAETSVAGQL- 62 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + QA +EA H+ F + + + G ++V A Sbjct: 63 GSYQAAAREDSMEAAFRAQARDEARHARFFDRVASDVAGIPGANPAARQDVLRAQVGAEL 122 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG-MWFYTGFAQILSLGRANK-MVG 219 + L + + A L+ +V EG + A + +L ++ + G Sbjct: 123 VDLFEHRLPATARQLAEDPAGLTGAVGLYH--MVIEGVVLLAGQHAMLDTLEGLSRPLPG 180 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279 + + + ++RDE H+ FG ++ ++ + +L + + Sbjct: 181 VRKGMELVLRDERWHIGFGSRIVQ---------CADIGREDADALLEQGENAAKVWGDLI 231 Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 P+ RR G++ Sbjct: 232 TPEAIDTAVRQH---------RRRLKAAGIK 253 >gi|1196947|gb|AAA88620.1| unknown protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 101 Score = 59.3 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%) Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP 319 +L E EI Y + + ++ + AN+ +G E LF NP Sbjct: 6 DLLMELYDNEIRYTEALYAE---TGWVNDVKAFLCYNANKALMNLGYEALFPPEMADVNP 62 Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350 + + + +FF + Y G ++ Sbjct: 63 AILAAVSPNADENHDFFSGSGSSYVMGKTVE 93 >gi|147800139|emb|CAN68817.1| hypothetical protein VITISV_036653 [Vitis vinifera] Length = 924 Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344 + +Y + + + E + ENPF WM E I L+ NFF+ R+ +YQ Sbjct: 726 LEFLIEDLYKYQSYKWDX-TVALXYERKYNV-ENPFDWM-EFISLQGNANFFQRRMGDYQ 782 Query: 345 QGAELK 350 + + + Sbjct: 783 KASIMS 788 >gi|313125821|ref|YP_004036091.1| hypothetical protein Hbor_10540 [Halogeometricum borinquense DSM 11551] gi|312292186|gb|ADQ66646.1| hypothetical protein Hbor_10540 [Halogeometricum borinquense DSM 11551] Length = 297 Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 89/238 (37%), Gaps = 11/238 (4%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101 A + A HW P E+ + D A + + L ++ + F + E V ++V Sbjct: 24 AERYFRHATERHWSPYEIDLAADRA---AISDLGRSAFTQLRATIAMFGAGEENVTEDLV 80 Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161 + +N ++++ +EEA H+ F+ + + + P+ Sbjct: 81 P-LAATTTNKTDQRFVASHIYEEAKHAAFFERYWKDVIRPAEDARGLDPTDPTADRWFTA 139 Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFV-FYVVFEGMWFYTGFAQILSL----GRANK 216 A + + + D + + +++ EG++ TGF I + Sbjct: 140 AYEEIFNRTETAMNQLLDDDTPTNRANAYCHYHLTVEGVFGQTGFHAIEATFDPETDGPS 199 Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274 + G+ E ++ +DE H+ +G++ + ++ + F +++ L E + Sbjct: 200 LPGLVEGISHVRQDEGRHVGYGMNQLAELL--QRTAVERSFVEETVETLAEPVDAVVE 255 >gi|167837964|ref|ZP_02464823.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia thailandensis MSMB43] Length = 70 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 26/41 (63%), Positives = 32/41 (78%) Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLS 48 S A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ Sbjct: 29 SAAVASEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLA 69 >gi|213621705|ref|ZP_03374488.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 52 Score = 57.7 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 +++ ++ P L +F EAVH+ ++ I ++L Sbjct: 2 LTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLC 52 >gi|169838797|ref|ZP_02871985.1| ribonucleotide-diphosphate reductase subunit beta [candidate division TM7 single-cell isolate TM7a] Length = 71 Score = 57.3 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87 D QL P++Y WA+ Y A N W P EV + DLA +K+ L R+++K+ L Sbjct: 16 DGLQLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFKN---LQKTRRMLLKQLLA 70 >gi|213581345|ref|ZP_03363171.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 90 Score = 56.9 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%) Query: 275 YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333 +A G +GLN QY+++I N R +GL+ F+ NP PW++ + + Sbjct: 1 WADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQ 60 Query: 334 NF-FETRVTEY---QQGAELKWD 352 E V+ Y Q +E+ D Sbjct: 61 VAPQEVEVSSYLVGQIDSEVDTD 83 >gi|21686785|ref|NP_663285.1| ribonucleotide reductase 2a [Phthorimaea operculella granulovirus] gi|21637101|gb|AAM70318.1| ribonucleotide reductase 2a [Phthorimaea operculella granulovirus] Length = 345 Score = 56.2 bits (134), Expect = 7e-06, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 21/229 (9%) Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92 Q+ P Y +W Y NHW E DDL+ ++ +T + + ++ A Sbjct: 35 QIWPPSYYPSWFYYQQHQANHWFANEHDPLDDLSGFE---KITPAWQNALLQSFAALAIG 91 Query: 93 ESLVANNIVLAIYRHLSNPE-CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151 + V I L E + QA E H + ++ L F Sbjct: 92 DDKVMCLISEN---ELQWEESTKWMFADQAARETTHKIAYNRMLE---LARVSTFFTTDT 145 Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211 + S AN+ + ++ + ++ E F F I + Sbjct: 146 LTSD-EYANYLMDKVDL----------DVSNVNAKAKFLITMMLCERYLFAAPFLIINLM 194 Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 G + + + +M+DE H + V++ +++ + + Sbjct: 195 GESGFINTCVKINMQVMKDEHSHYAHSVQVLHDSCQNFENIFNELCAKF 243 >gi|115754707|ref|XP_001199509.1| PREDICTED: similar to putative ribonucleotide reductase small subunit, partial [Strongylocentrotus purpuratus] Length = 44 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 16/41 (39%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 V + + E R + Q E +HS + +I + D Sbjct: 1 VERFSQEVQVAEARCFYGFQIAIENIHSEMYSLLIDTYIKD 41 >gi|226331041|ref|ZP_03806559.1| hypothetical protein PROPEN_04971 [Proteus penneri ATCC 35198] gi|225201836|gb|EEG84190.1| hypothetical protein PROPEN_04971 [Proteus penneri ATCC 35198] Length = 86 Score = 55.0 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 11/87 (12%) Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLK 330 Y + VG ++++ + AN+ +G E LF +P S D Sbjct: 2 KYTEDLY--DTVGWT-EDVKKFLHYNANKALMNLGYEALFPDEITDVSPAILSSLSPDAN 58 Query: 331 KEKNFFETRVTEYQQGAEL-----KWD 352 + +FF + Y G + WD Sbjct: 59 ENHDFFSGSGSSYVIGKTINTEDDDWD 85 >gi|76802850|ref|YP_330945.1| ribonucleoside-diphosphate reductase, beta subunit 3 [Natronomonas pharaonis DSM 2160] gi|76558715|emb|CAI50308.1| probable ribonucleoside-diphosphate reductase, beta subunit 3 [Natronomonas pharaonis DSM 2160] Length = 316 Score = 54.6 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 91/279 (32%), Gaps = 28/279 (10%) Query: 45 KYLSACNNHWMP-TEVP---MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100 + A NHW P ++ ++ D + + E + R L F + E V ++ Sbjct: 22 YFKHAVYNHWDPYEDIEKALIEQDRKRLIDADEFGETEFEDLMRTLALFGAGEEAVTEDL 81 Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + + + + ++ Q +EEA H+ F + + R P+ Sbjct: 82 AP-LMLVVDDINDQMFVSSQIYEEAKHTQFFDRYWREVIHPVADARGFERRAPTDQRF-- 138 Query: 161 WALQYTQTLSS-----PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRA 214 + Y +D ++ +++ E + TG+ + S+ Sbjct: 139 FVDGYVDLFDRTEAAMERLLEPGEDTPTNRVRAYCHYHLTVESVLAQTGYWGIVSSMSPR 198 Query: 215 NK----------MVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN--PHLWTKEFQQKSR 262 + G+ + +I DE H+ FG+ + E+ +E Q+ Sbjct: 199 GSEALREDGMPHLEGLVKGISFIRSDEGRHVGFGMQKVQSHLAEDGVDESVVRETLQELL 258 Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301 ++ E P+ V + + ++ I + Sbjct: 259 PLVAETVSATDEVTD---PEPLVEYASEKLTRRIEVITD 294 >gi|213420352|ref|ZP_03353418.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 88 Score = 53.5 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 5/81 (6%) Query: 277 HETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335 G +GLN QY+++I N R +GL+ F+ NP PW++ + + Sbjct: 1 DYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVA 60 Query: 336 -FETRVTEY---QQGAELKWD 352 E V+ Y Q +E+ D Sbjct: 61 PQEVEVSSYLVGQIDSEVDTD 81 >gi|213855386|ref|ZP_03383626.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 80 Score = 53.1 bits (126), Expect = 7e-05, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTE 342 +GLN QY+++I N R +GL+ F+ NP PW++ + + E V+ Sbjct: 1 MIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSS 60 Query: 343 Y---QQGAELKWD 352 Y Q +E+ D Sbjct: 61 YLVGQIDSEVDTD 73 >gi|555172|gb|AAA46037.1| herpesvirus saimiri gene 60 homologue (aa 177 to 258); putative [Bovine herpesvirus 4] Length = 82 Score = 52.3 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 9/86 (10%) Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQI--KIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 G+ YI RDE LH + N + + PH+ + EA +E + Sbjct: 3 GVCLANDYISRDELLHTRAAALLYNTMVSGADKPHML------WVHNLFKEAVEVEHEFI 56 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANR 302 G +N +++ A+R Sbjct: 57 -LVKSSGVSAVNVDDIRSFLEATADR 81 >gi|14602365|ref|NP_148912.1| ORF128 RR2A [Cydia pomonella granulovirus] gi|14591883|gb|AAK70788.1|U53466_128 ORF128 RR2A [Cydia pomonella granulovirus] Length = 362 Score = 51.9 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 61/218 (27%), Gaps = 13/218 (5%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89 + ++ P Y +W + NHW E + + + + + ++ Sbjct: 34 NRLKIWPPTYTPSWNYLVEHQINHWYANE---HKPMDDLNGFDKIDSAWQNALLQSFAVL 90 Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149 A + V + I + + QA E H + ++ + N Sbjct: 91 AIGDDKVMDLISNSDIEW--EESTKWMFADQAARETTHKIVYNRMLELACVSRSYTVNTL 148 Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209 Y + + ++ E F F I Sbjct: 149 TSGD--------FSHYIMDCRVLDEFQLPERNEVNDKVLFLSTMILCERYLFAAPFLIIN 200 Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247 +G + + + +M+DE +H + ++ +K Sbjct: 201 LMGESGFINKCVKINMQVMKDEHVHYKHAVQLLMDLKR 238 >gi|294669616|ref|ZP_06734683.1| hypothetical protein NEIELOOT_01517 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308529|gb|EFE49772.1| hypothetical protein NEIELOOT_01517 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 81 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK 330 +GLN QY+++I N R +GL F+ T+NP PW++ + Sbjct: 1 MIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSD 48 >gi|239934284|ref|ZP_04691237.1| hypothetical protein SghaA1_39154 [Streptomyces ghanaensis ATCC 14672] gi|291442734|ref|ZP_06582124.1| VlmB [Streptomyces ghanaensis ATCC 14672] gi|291345629|gb|EFE72585.1| VlmB [Streptomyces ghanaensis ATCC 14672] Length = 330 Score = 50.4 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 61/193 (31%), Gaps = 15/193 (7%) Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R + GF SE + + + PE + Q +EA H+ F+ + L Sbjct: 74 REALVLEFGFRGLSEEVATRILAPYVAVAPGIPELE-FYATQLIDEARHARVFRNHLVEL 132 Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 G+ E L E+ + FT + ++F + VF +V EG Sbjct: 133 GMPEATLLRDIEEMAVDYHR-------EVLQPVIDFTLDIVERQKDFAGGVAVFAIVIEG 185 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + E + DE HL ++ ++P E++ Sbjct: 186 VLAPAAELSERKWT--PLSPATGEISRGTAIDEIRHLTVASTILRDHVRDHP-----EYR 238 Query: 259 QKSRTMLHEATLL 271 + +L L Sbjct: 239 PRLMEILRAGVEL 251 >gi|45259565|dbj|BAD12265.1| p53-inducible ribonucleotide reductase small subunit 2 short form beta [Homo sapiens] Length = 66 Score = 50.0 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349 ENPF +M E I L+ + NFFE RV+EYQ+ A + Sbjct: 20 AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 52 >gi|296086891|emb|CBI33064.3| unnamed protein product [Vitis vinifera] Length = 301 Score = 50.0 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 16/41 (39%) Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 + + M G+ + I RDE LH +F + K Sbjct: 12 FCDIFWKKRGLMPGLTFSNELISRDEGLHCDFACLLYKNRK 52 >gi|225593124|gb|ACN96043.1| ribonucleoside-diphosphate reductase beta subunit [Fischerella sp. MV11] Length = 53 Score = 49.2 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 25/45 (55%) Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145 + +H+ +PE + Q F+EA+H+ ++QYII ++ + Sbjct: 1 MSTFKKHIPSPEIELCMAEQIFQEAMHNQSYQYIIETVVPSDRRT 45 >gi|289809666|ref|ZP_06540295.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 74 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF-FETRVTEY---QQ 345 QY+++I N R +GL+ F+ NP PW++ + + E V+ Y Q Sbjct: 1 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQI 60 Query: 346 GAELKWD 352 +E+ D Sbjct: 61 DSEVDTD 67 >gi|296086890|emb|CBI33063.3| unnamed protein product [Vitis vinifera] Length = 75 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329 +NA QY++F+A+ IG E + ENPF WM E I L Sbjct: 1 MNATLMSQYIKFVADHLLVAIGYERKYNV-ENPFDWM-EFISL 41 >gi|166367087|ref|YP_001659360.1| ribonucleoside-diphosphate reductase beta chain [Microcystis aeruginosa NIES-843] gi|166089460|dbj|BAG04168.1| ribonucleoside-diphosphate reductase beta chain [Microcystis aeruginosa NIES-843] Length = 64 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWM 55 +SPI ++++ + + ++ QL ++Y WA Y N W+ Sbjct: 14 ISPIFNPAGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWI 63 >gi|404605|gb|AAD10549.1| uncertain [Mycoplasma genitalium] Length = 107 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 6/98 (6%) Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313 TK + +++ LE Y E + ++ + A + +G + F Sbjct: 3 TKGDESICFELMYRLIELEKDYLKELYEGFGI---VDDAIKFSVYNAGKFLQNLGYDSPF 59 Query: 314 KYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348 E P + + +FF + Y G Sbjct: 60 TAAETRIKPEIFAQLSARADENHDFFSGNGSSYVMGVS 97 >gi|6581175|gb|AAF04633.2|AF099142_1 small subunit of ribonucleotide reductase [shrimp white spot syndrome virus] Length = 100 Score = 47.7 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 15/48 (31%) Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64 V+ + + P+ + WE Y W E+ + D Sbjct: 52 VDTFKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERD 99 >gi|209523559|ref|ZP_03272113.1| hypothetical protein AmaxDRAFT_0931 [Arthrospira maxima CS-328] gi|209495964|gb|EDZ96265.1| hypothetical protein AmaxDRAFT_0931 [Arthrospira maxima CS-328] gi|291570482|dbj|BAI92754.1| ribonucleoside-diphosphate reductase beta chain, fragment [Arthrospira platensis NIES-39] Length = 70 Score = 47.3 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 3 NNTGLSPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWM 55 N L+PI + +V + M +++ QL ++Y WA Y N W+ Sbjct: 16 NKMPLNPIFNPDGNDDVAHRSMWFGETTNLMQLNDVRYSWAVGLYKQMRENFWV 69 >gi|328480210|gb|EGF49138.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus rhamnosus MTCC 5462] Length = 101 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 6/69 (8%) Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345 ++++ AN+ +G E F T NP M+ + +FF Y+ Sbjct: 21 TDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MNGISTSTANHDFFSQVGNGYRL 79 Query: 346 GA--ELKWD 352 G ++ D Sbjct: 80 GQVEAMEDD 88 >gi|58700007|ref|ZP_00374568.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58533477|gb|EAL57915.1| ribonucleoside-diphosphate reductase, beta subunit, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 74 Score = 46.9 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 102 LAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160 + Y ++ P E L + E +H + Y++ ++G+ + E ++ + + ++ K Sbjct: 1 MRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPDSE-YHAFLKYDAMRKKYE 59 Query: 161 WALQYTQT 168 + L++ + Sbjct: 60 YMLEFEDS 67 >gi|284051982|ref|ZP_06382192.1| ribonucleoside-diphosphate reductase, beta subunit [Arthrospira platensis str. Paraca] Length = 53 Score = 46.2 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 7 LSPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWM 55 L+PI + +V + M +++ QL ++Y WA Y N W+ Sbjct: 3 LNPIFNPDGNDDVAHRSMWFGETTNLMQLNDVRYSWAVGLYKQMRENFWV 52 >gi|269128957|ref|YP_003302327.1| hypothetical protein Tcur_4771 [Thermomonospora curvata DSM 43183] gi|268313915|gb|ACZ00290.1| conserved hypothetical protein [Thermomonospora curvata DSM 43183] Length = 370 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 53/198 (26%), Gaps = 31/198 (15%) Query: 73 GLTDDERLMIKR---NLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 +T+ ER R + F N+ I + + + + + Y Q +EA H Sbjct: 84 KMTEAERKEFGRHNGSWLFSQFLHGEQGALNVSARIVQTVPDLDSKFYAATQCMDEARHV 143 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 + I Y + D + Sbjct: 144 EAYAKFI-----------------------HEKIGMYYPINQDLAKLLKEALDDSRWDLA 180 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V+ EG+ A + + Y+M+DE+ H+ FG + E Sbjct: 181 YLGMQVLIEGL----ALAAFGLYRDMATTPLVKQLLAYVMQDEARHVAFGRLALKDYYAE 236 Query: 249 NPHLWTKEFQQKSRTMLH 266 E ++ + Sbjct: 237 LTDKERAEREEFVIEGCY 254 >gi|94309487|ref|YP_582697.1| hypothetical protein Rmet_0542 [Cupriavidus metallidurans CH34] gi|93353339|gb|ABF07428.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 360 Score = 45.8 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 30/184 (16%) Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162 I + + + + Y Q +EA H + ++ K Sbjct: 118 RIVQMVPGMDAKFYAATQTMDEARHVEAYSRLL--------------------HEKVGLL 157 Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222 T L S TT T D + V+ EG+ A + K A Sbjct: 158 YPITPGLKSLLETTLT---DSRWDFCYLGMQVLVEGL----ALAAFQRIRDFAKNPLAAS 210 Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT---MLHEATLLEIAYAHET 279 Y+M+DES H+ FG + + +E + ++ E + + Sbjct: 211 INAYVMQDESRHVAFGRTALRGYYPQLTEAEQREREDFVIEACQLMRERFDQKEVWGRLG 270 Query: 280 MPKG 283 +P+ Sbjct: 271 LPED 274 >gi|209963746|ref|YP_002296661.1| hypothetical protein RC1_0409 [Rhodospirillum centenum SW] gi|209957212|gb|ACI97848.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 362 Score = 45.8 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 68/245 (27%), Gaps = 55/245 (22%) Query: 45 KYLSACNNHWMP-TEVPMQDDL------------------ALWKSKNGLTDDERLMIKR- 84 Y W + DL +W + +T+ ER + Sbjct: 41 LYDKGKRQQWDASDRIDWSQDLDPENPMQLPDESLLIFGTPMW---DRMTEAERRRFRHH 97 Query: 85 --NLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141 I A I + + + + + Y Q +EA H + ++ Sbjct: 98 AQAWQISQFLHGEQGALICTAKIVQTVPDIDSKFYAATQVADEARHVEAYSRLLR----- 152 Query: 142 EGELFN-MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200 E F Y P + + A+ D+ + ++ EG+ Sbjct: 153 --EKFELAYPINPHLKTLLDQAIS-----------------DRRWDFTYLAMQILIEGL- 192 Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260 A + ++ A Y+M+DE+ H+ FG + E ++ Sbjct: 193 ---ALAAFQRIRDYSQNPLSAAINAYVMQDEARHVAFGRLALRDYYPHLTQKERDEREEF 249 Query: 261 SRTML 265 + Sbjct: 250 VQEAC 254 >gi|197104688|ref|YP_002130065.1| ribonucleoside-diphosphate reductase beta chain [Phenylobacterium zucineum HLK1] gi|196478108|gb|ACG77636.1| ribonucleoside-diphosphate reductase beta chain [Phenylobacterium zucineum HLK1] Length = 367 Score = 45.4 bits (106), Expect = 0.014, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 56/206 (27%), Gaps = 34/206 (16%) Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL----SNPECRQYLLR 119 D WK L+ +++ R S+ L L + L + + Y Sbjct: 96 DHPKWK---ALSPEQKADFMRRTTAQTLSQFLHGEQGALMVASQLVSCAPTHDAKLYAAS 152 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179 Q F+EA H F + + F Sbjct: 153 QTFDEARHVEVFHRYL-----------------------MERCHMIYPINPNLKFLLDKV 189 Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239 D+ + ++ EG F I + + +MRDE H+ FG+ Sbjct: 190 LTDERWDLKFIGMQILIEG-LALAAFQTIHETTPDPLLK---QVVGLVMRDEGRHVAFGV 245 Query: 240 DVINQIKIENPHLWTKEFQQKSRTML 265 + + P +E Q + Sbjct: 246 NYLEDWIRALPQAEIEERAQFAYEAC 271 >gi|242069239|ref|XP_002449896.1| hypothetical protein SORBIDRAFT_05g025245 [Sorghum bicolor] gi|241935739|gb|EES08884.1| hypothetical protein SORBIDRAFT_05g025245 [Sorghum bicolor] Length = 79 Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332 + V +N QY+ FIA+ + + ++ NPF WM E+I L+ + Sbjct: 25 ICNALVRMNGRLMSQYIGFIADYLLMALEHKKMYDVA-NPFDWM-ELISLQGK 75 >gi|269861603|ref|XP_002650501.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] gi|220066034|gb|EED43552.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon bieneusi H348] Length = 53 Score = 45.0 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346 + NPF +M E I L+ + NFFE R YQ+G Sbjct: 7 HVSNPFDFM-ENISLQGKTNFFERREANYQKG 37 >gi|282861091|ref|ZP_06270156.1| conserved hypothetical protein [Streptomyces sp. ACTE] gi|282563749|gb|EFB69286.1| conserved hypothetical protein [Streptomyces sp. ACTE] Length = 370 Score = 44.6 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 49/202 (24%), Gaps = 28/202 (13%) Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124 W E + F I + + + + Y QA +E Sbjct: 80 PHWAKMTARDRGELRRHYTSWQFSQFLHGEQGAMVCAARIVEAVPDLDAKFYSATQAMDE 139 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A H+ + + + G D Sbjct: 140 ARHAEIYGRFL-----------------------HEKVGMLYPINDNLQGLLGDTLRDSR 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V+ EG+ A + + Y+M+DE+ H+ FG + Sbjct: 177 WDMPYLGMQVLIEGL----ALAAFGMIRDTTTRPLPKQILAYVMQDEARHVAFGRMALRD 232 Query: 245 IKIENPHLWTKEFQQKSRTMLH 266 + +E ++ H Sbjct: 233 YYKQLGDAELREREEFVIEGCH 254 >gi|70926559|ref|XP_735800.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56509782|emb|CAH82994.1| hypothetical protein PC300265.00.0 [Plasmodium chabaudi chabaudi] Length = 106 Score = 44.6 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316 + + A LE + E + + + +Q++Q++A+ + + + Sbjct: 7 LKYEVLDYFKTAVDLEYNFCVEMLDFDSLKITKDQVKQFLQYLADTMLVNLKYSKHYN-S 65 Query: 317 ENPFPW--MSEVIDLKKEKN 334 + PF W S++I + KN Sbjct: 66 KYPFTWKEFSKIIVSENAKN 85 >gi|311896139|dbj|BAJ28547.1| hypothetical protein KSE_27350 [Kitasatospora setae KM-6054] Length = 323 Score = 44.2 bits (103), Expect = 0.032, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 60/193 (31%), Gaps = 15/193 (7%) Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R + GF SE + + + PE + Q +EA H+ F+ + L Sbjct: 66 RDALVLEFGFRGLSEEIATRLLAHYVAIAPGIPELE-FYTTQLVDEARHARVFRNHLVEL 124 Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198 GL L ++ + + FT ++F+ + VF +V EG Sbjct: 125 GLPAATLLRDIDDMAADYRR-------RVLQPVEDFTLDIVRDQRDFIGGVAVFAIVIEG 177 Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258 + E + DE HL ++ +P E++ Sbjct: 178 VLAPAAELSERKWT--PLSPATGEISRGTAIDEIRHLTVASTILRDHVAAHP-----EYR 230 Query: 259 QKSRTMLHEATLL 271 + +L L Sbjct: 231 PRLLEILRAGVKL 243 >gi|297157269|gb|ADI06981.1| hypothetical protein SBI_03860 [Streptomyces bingchenggensis BCW-1] Length = 369 Score = 43.8 bits (102), Expect = 0.034, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 49/202 (24%), Gaps = 28/202 (13%) Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124 W E F I + + + + Y Q +E Sbjct: 80 RHWGKMTERDKGELRHHFAAWQFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A H+ + + + + + G D Sbjct: 140 ARHAEIYSRFLR-----------------------DKLGTLYPINDNLAALLGDTLRDSR 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V+ EG+ A + + Y+M+DE+ H+ FG + Sbjct: 177 WDMPYLGMQVLIEGL----ALAAFGLIRDTTDKPLPRQILTYVMQDEARHVAFGRMALRD 232 Query: 245 IKIENPHLWTKEFQQKSRTMLH 266 + +E ++ + Sbjct: 233 YYRQLTDAELREREEFVIEGCY 254 >gi|218673203|ref|ZP_03522872.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli GR56] Length = 50 Score = 43.8 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%) Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68 + N++ K W N W+P +VP+ +D+ W Sbjct: 15 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSW 50 >gi|114800441|ref|YP_760279.1| hypothetical protein HNE_1568 [Hyphomonas neptunium ATCC 15444] gi|114740615|gb|ABI78740.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444] Length = 370 Score = 43.8 bits (102), Expect = 0.035, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 79/273 (28%), Gaps = 60/273 (21%) Query: 39 YGWAWE--------KYLSACNNHWMPT-----EVPMQDD----------LALWKSKNGLT 75 Y W +E Y +W EVP L ++ Sbjct: 46 YNWDYESANAKIRRLYELGKRFNWNAELDVDWEVPFDKSKGPSQAGLNPLHDHPVYQAMS 105 Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHL----SNPECRQYLLRQAFEEAVHSHTF 131 +++R S+ L + + L + + Y Q F+EA H F Sbjct: 106 EEQRNEYAWRSLAQVLSQFLHGEQGAMMVASQLVSCAPTYDAKLYAASQTFDEARHVEVF 165 Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191 + + Y PS+ + L D + Sbjct: 166 NKYLRT------RCRVEYPVNPSLKLLLDKIL-----------------TDPRWDLKFIG 202 Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251 V+ EG F + R + + +MRDE H+ FG++ + P Sbjct: 203 MQVLIEG-LALAAFQTMSQTTRDPLLR---QILHLVMRDEGRHVAFGVNYLEDWIKALPE 258 Query: 252 LWTKEFQQKSRT---MLHE---ATLLEIAYAHE 278 +E Q + ++ E +T++E + + Sbjct: 259 EQIEERAQFAFEACAIMRERLFSTIVEEEFGFD 291 >gi|7258402|emb|CAB77448.1| aerobic ribonucleotide reductase small subunit [Pectobacterium carotovorum] Length = 94 Score = 43.8 bits (102), Expect = 0.037, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 16/94 (17%) Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--------- 182 ++ D +F+ I +A Y +L + GT + Sbjct: 1 NIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKTVTVNLH 60 Query: 183 --QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 ++ L + E + FY FA + Sbjct: 61 TLKKQLYICLMSVNALEAIRFYVSFACSFAFAER 94 >gi|7532771|emb|CAB87138.1| aerobic ribonucleotide reductase class Ib small subunit [Yersinia pestis] gi|7532775|emb|CAB87140.1| aerobic ribonucleotide reductase class Ia small subunit [Yersinia pseudotuberculosis] Length = 94 Score = 43.8 bits (102), Expect = 0.040, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 16/94 (17%) Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--------- 182 ++ D +F+ I +A Y L + GT + Sbjct: 1 NIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVVVKLR 60 Query: 183 --QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 ++ L + E + FY FA + Sbjct: 61 DLKKQLYLCLMSVNALEAIRFYVSFACSFAFAER 94 >gi|320008578|gb|ADW03428.1| hypothetical protein Sfla_1994 [Streptomyces flavogriseus ATCC 33331] Length = 370 Score = 43.5 bits (101), Expect = 0.044, Method: Composition-based stats. Identities = 24/202 (11%), Positives = 46/202 (22%), Gaps = 28/202 (13%) Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124 W E + F I + + + + Y Q +E Sbjct: 80 PHWAKMTERDRGELRKHYTSWQFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A H+ + + G D Sbjct: 140 ARHAEIYARFL-----------------------HEKVGMLYPINDHLQGLLGDTLRDSR 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V+ EG F I + Y+M+DE+ H+ FG + Sbjct: 177 WDMPYLGMQVLIEG-LALAAFGMIRDTTTQPLPK---QILAYVMQDEARHVAFGRMALRD 232 Query: 245 IKIENPHLWTKEFQQKSRTMLH 266 + +E ++ + Sbjct: 233 YYKQLSDAERREREEFVIEGCY 254 >gi|154252074|ref|YP_001412898.1| hypothetical protein Plav_1622 [Parvibaculum lavamentivorans DS-1] gi|154156024|gb|ABS63241.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1] Length = 366 Score = 43.5 bits (101), Expect = 0.054, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 74/237 (31%), Gaps = 38/237 (16%) Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVL----AIYRHLSNPECRQYLLRQAFEE 124 ++ E+ ++++ + S+ + L I + + + + Y Q +E Sbjct: 81 AQFEKMSRKEKANVRKHFQAWQLSQFMQGEQGALICTAKIVTQVPDMDSKFYASTQVIDE 140 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A H +++ ++ K A T+ L T D Sbjct: 141 ARHVESYKRLLE---------------------KFQLAYPMTKPLQDLIEQTLL---DSR 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + VV EG FAQ + + A Y+M+DES H+ FG + Sbjct: 177 WDMTYLGMQVVIEG-LALASFAQ---IRDNAQNPLAAAVNAYVMQDESRHVAFGRLALRD 232 Query: 245 IKIENPHLWTKEFQQKSRTMLH------EATLLEIAYAHETMPKGFVGLNAPSCEQY 295 + E ++ + +A + + + G N+ ++ Sbjct: 233 YYPQLTEKERDEREEFLLEASYLMRDRFDAVEVWKNLGLDPVACGEHMYNSGFMTKF 289 >gi|254387631|ref|ZP_05002870.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294814984|ref|ZP_06773627.1| Hypothetical protein SCLAV_4151 [Streptomyces clavuligerus ATCC 27064] gi|326443355|ref|ZP_08218089.1| hypothetical protein SclaA2_19918 [Streptomyces clavuligerus ATCC 27064] gi|197701357|gb|EDY47169.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|294327583|gb|EFG09226.1| Hypothetical protein SCLAV_4151 [Streptomyces clavuligerus ATCC 27064] Length = 373 Score = 43.1 bits (100), Expect = 0.073, Method: Composition-based stats. Identities = 28/213 (13%), Positives = 52/213 (24%), Gaps = 28/213 (13%) Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPEC 113 P E D W + + + F I + + Sbjct: 69 TPDEALAVHDTPYWTKMSARERADLHRHMASWQFSQFLHGEQGAMVCAARIVESAPDLDA 128 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + Y Q +EA H+ + + + + Sbjct: 129 KFYSATQTMDEARHAEIYARFL-----------------------QDKVGMVYPINDNLQ 165 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 G D + V+ EG F I L + Y+M+DE+ Sbjct: 166 GLLGDTLRDSRWDMPYLGMQVLIEG-LALAAFGLIRDLTDKPLPK---QILAYVMQDEAR 221 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 H+ FG + E +E ++ + Sbjct: 222 HVAFGRMALRDYYRELSDAELREREEFVIEGCY 254 >gi|68010653|ref|XP_670832.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56486449|emb|CAH96459.1| hypothetical protein PB000804.01.0 [Plasmodium berghei] Length = 65 Score = 42.7 bits (99), Expect = 0.079, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 19/42 (45%) Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56 ++ ++++LN S+ L P+ Y W Y A + W Sbjct: 24 QKTKESNEKILNKESNRFTLHPIIYPEVWNFYKKAEASFWTA 65 >gi|27357032|gb|AAN86693.1| ribonucleotide reductase small subunit [Red sea bream iridovirus] Length = 48 Score = 42.7 bits (99), Expect = 0.081, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 26/48 (54%) Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 + K Q + ++ +A +E A+ E + +G+N+ S + Y+QF+ Sbjct: 1 MANKPCQDDAHEIISDAVDIETAFFREALKTPLLGMNSDSMKLYIQFV 48 >gi|182436000|ref|YP_001823719.1| hypothetical protein SGR_2207 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464516|dbj|BAG19036.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 369 Score = 42.7 bits (99), Expect = 0.085, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 48/202 (23%), Gaps = 28/202 (13%) Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124 W E + F I + + + + Y Q +E Sbjct: 80 PHWAKMTERDRGELRTHYTSWQFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A H+ + + + G D Sbjct: 140 ARHAEIYGRFL-----------------------HEKVGMLYPVNDNLQGLLGDTLRDSR 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V+ EG+ A + + Y+M+DE+ H+ FG + Sbjct: 177 WDMPYLGMQVLIEGL----ALAAFGMIRDTTTKPLPKQILAYVMQDEARHVAFGRMALRD 232 Query: 245 IKIENPHLWTKEFQQKSRTMLH 266 + +E ++ + Sbjct: 233 YYGQLSDAELREREEFVIEGCY 254 >gi|326776624|ref|ZP_08235889.1| hypothetical protein SACT1_2457 [Streptomyces cf. griseus XylebKG-1] gi|326656957|gb|EGE41803.1| hypothetical protein SACT1_2457 [Streptomyces cf. griseus XylebKG-1] Length = 369 Score = 42.7 bits (99), Expect = 0.085, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 48/202 (23%), Gaps = 28/202 (13%) Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124 W E + F I + + + + Y Q +E Sbjct: 80 PHWAKMTERDRGELRTHYTSWQFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A H+ + + + G D Sbjct: 140 ARHAEIYGRFL-----------------------HEKVGMLYPVNDNLQGLLGDTLRDSR 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V+ EG+ A + + Y+M+DE+ H+ FG + Sbjct: 177 WDMPYLGMQVLIEGL----ALAAFGMIRDTTTKPLPKQILAYVMQDEARHVAFGRMALRD 232 Query: 245 IKIENPHLWTKEFQQKSRTMLH 266 + +E ++ + Sbjct: 233 YYGQLSDAELREREEFVIEGCY 254 >gi|194015851|ref|ZP_03054466.1| mannitol-1-phosphate 5-dehydrogenase [Bacillus pumilus ATCC 7061] gi|194012206|gb|EDW21773.1| mannitol-1-phosphate 5-dehydrogenase [Bacillus pumilus ATCC 7061] Length = 373 Score = 42.3 bits (98), Expect = 0.10, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 65/180 (36%), Gaps = 17/180 (9%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNH--WMPTEVPMQDDLALWKS---KNGLTDD-ERL 80 + V++++P+++ + + W+ E D+ LT ER Sbjct: 152 PNAAVDRIVPIQHHE--DILKVSVEPFFEWVIDETGFIGDVPQIDGATFVQDLTPYIERK 209 Query: 81 MIKRNLG-FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 + N G A+ V I + PE R+ + E A+H T Y+I + G Sbjct: 210 LFTVNTGHALAAYVGYQQ--GVQTIKEAVDTPEIRKVV-----EGALH-ETGSYLIDTYG 261 Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 ++ E +++ A + + T+ SP G D + + + +G+ Sbjct: 262 FEKEEHDAYIQKIIKRFENAFISDEVTRVARSPLRKLGADDRLIGPAKKIKQPVYLIKGI 321 >gi|302554117|ref|ZP_07306459.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces viridochromogenes DSM 40736] gi|302471735|gb|EFL34828.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces viridochromogenes DSM 40736] Length = 370 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 48/202 (23%), Gaps = 28/202 (13%) Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHLSNPECRQYLLRQAFEE 124 W E + F I I + + + + Y Q +E Sbjct: 80 RHWAKLTERDKGELRRHYASWQFSQFLHGEQGAMICAARIVESVPDLDAKFYSATQTMDE 139 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A H+ + + + G D Sbjct: 140 ARHAEIYGRFL-----------------------HEKIGLLYPINDNLQALLGDTLRDSR 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V+ EG F I + Y+M+DE+ H+ FG + Sbjct: 177 WDMPYLGMQVLIEG-LALAAFGMIRDTTDKPLPK---QILAYVMQDEARHVAFGRMALRD 232 Query: 245 IKIENPHLWTKEFQQKSRTMLH 266 + +E ++ + Sbjct: 233 YYKQLTDAELREREEFVIEGCY 254 >gi|297192107|ref|ZP_06909505.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151205|gb|EFH31021.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 369 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 24/202 (11%), Positives = 48/202 (23%), Gaps = 28/202 (13%) Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124 W E + F I + + + + Y Q +E Sbjct: 80 RHWAKMTERDKGELRKHYTSWQFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A H+ + + + G D Sbjct: 140 ARHAEIYGRFL-----------------------HEKIGMLYPINDNLQSLLGDTLRDSR 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V+ EG+ A + + YIM+DE+ H+ FG + Sbjct: 177 WDMPYLGMQVLIEGL----ALAAFGMIRDTTTKPLPKQILAYIMQDEARHVAFGRMALRD 232 Query: 245 IKIENPHLWTKEFQQKSRTMLH 266 + +E ++ + Sbjct: 233 YYQQLSDAELREREEFVIEGCY 254 >gi|7532769|emb|CAB87137.1| aerobic ribonucleotide reductase class Ia small subunit [Yersinia enterocolitica] Length = 94 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 16/94 (17%) Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDAD--------- 182 ++ D +F+ I +A Y L + GT + Sbjct: 1 NILNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKPVVVNLR 60 Query: 183 --QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214 ++ L + E + FY FA + Sbjct: 61 ELKKQLYLCLMSVNALEAIRFYVSFACTFAFAER 94 >gi|29828831|ref|NP_823465.1| hypothetical protein SAV_2289 [Streptomyces avermitilis MA-4680] gi|29605936|dbj|BAC70000.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 327 Score = 42.3 bits (98), Expect = 0.12, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 19/195 (9%) Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 R + GF SE + + + PE + Q +EA H+ F+ + L Sbjct: 70 RDALVLEFGFRGLSEEIATRLLGHYVAIAPGVPELE-FYATQLIDEARHARVFRNHLVEL 128 Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSP--SFTTGTKDADQEFLQDLFVFYVVF 196 G+ G L E+ A Y + + P FT +F + VF +V Sbjct: 129 GMPAGTLLKDIDEM---------AADYRKRVLDPVVDFTLDIVRDQADFPGGVAVFAIVI 179 Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256 EG E + DE HL ++ +E+P E Sbjct: 180 EGALAPAAELSERKWT--PLSPATGEISRGTAIDEIRHLTVASTILRDHAVEHP-----E 232 Query: 257 FQQKSRTMLHEATLL 271 ++ + +L L Sbjct: 233 YRPRLLEILRAGVRL 247 >gi|213855388|ref|ZP_03383628.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 108 Score = 41.9 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 3/70 (4%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D ++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ- 64 Query: 71 KNGLTDDERL 80 L + E+L Sbjct: 65 --ALPEHEKL 72 >gi|302542560|ref|ZP_07294902.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC 53653] gi|302460178|gb|EFL23271.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC 53653] Length = 380 Score = 41.9 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 50/208 (24%), Gaps = 40/208 (19%) Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124 W + E + F I + + + Y Q +E Sbjct: 91 PHWDRMSDRERGELRRHAASWQFSQFLHGEQGAMVCAARIVESAPDLDAKFYSATQTMDE 150 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A H+ + + + + G D Sbjct: 151 ARHAELYGRFLR-----------------------DKIGMLYPINDNLQELLGDTLRDSR 187 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA------EQYQYIMRDESLHLNFG 238 + V+ EG L+L + + Y+M+DE+ H+ FG Sbjct: 188 WDMAYLGMQVLIEG----------LALAAFGLIRDTTDKPLPKQLLAYVMQDEARHVAFG 237 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLH 266 + + +E ++ + Sbjct: 238 RMALRDYYRDLTDAELREREEFVIEGCY 265 >gi|114570180|ref|YP_756860.1| hypothetical protein Mmar10_1630 [Maricaulis maris MCS10] gi|114340642|gb|ABI65922.1| conserved hypothetical protein [Maricaulis maris MCS10] Length = 363 Score = 41.9 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 61/202 (30%), Gaps = 36/202 (17%) Query: 72 NGLTDDERLMIKRNLGFFASSESLVANN----IVLAIYRHLSNPECRQYLLRQAFEEAVH 127 + +T ER+ +R+ + S+ + I + + + + Y Q +EA H Sbjct: 84 DKMTKKERIEFRRHAQAWNISQFMQGEQAALICAAKIVESVPDLDAKFYAATQVMDEARH 143 Query: 128 SHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 ++ ++T G+ E + ++ ++ Q Sbjct: 144 VEAYKNLMTKFGVAYPMTEPLRQLVDQALRDSRWDFTYLAMQ------------------ 185 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 VV EG F I L + Y+M DE+ H+ FG + Sbjct: 186 --------VVIEG-LALAAFGTIRDLAQNPLAK---MVNAYVMEDEARHVAFGRLSLRDY 233 Query: 246 KIENPHLWTKEFQQKSRTMLHE 267 E ++ + Sbjct: 234 YPHLTQAERDEREEFLVEACYH 255 >gi|223954268|gb|ACN30264.1| UL40 [Anatid herpesvirus 1] Length = 46 Score = 41.5 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351 IGL PLF + + ++ NFFE R T Y G+ L Sbjct: 2 IGLAPLFDEPPPKHDFPLAFMATSQQTNFFERRNTTYA-GSVLND 45 >gi|328710829|ref|XP_003244373.1| PREDICTED: hypothetical protein LOC100575936 [Acyrthosiphon pisum] Length = 66 Score = 41.5 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR--VTEY 343 + Y+ A+R ++G + +PF E+ + + NFFE R T Y Sbjct: 8 KIYIGDFADRLLKELGFQQFTGRQTHPF---MELTPQQGKTNFFERRLSNTNY 57 >gi|239982288|ref|ZP_04704812.1| hypothetical protein SalbJ_22849 [Streptomyces albus J1074] gi|291454133|ref|ZP_06593523.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291357082|gb|EFE83984.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 368 Score = 41.5 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 48/202 (23%), Gaps = 28/202 (13%) Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHLSNPECRQYLLRQAFEE 124 W E + F I I + + + + Y Q +E Sbjct: 80 RHWARMTERDKAELRRHYASWQFSQFLHGEQGAMICAARIVESVPDMDAKFYSATQTMDE 139 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A H+ + + + G D Sbjct: 140 ARHAEIYGRFL-----------------------HEKIGMLYPVNDNLQSLLGDTLRDSR 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V+ EG F I + Y+M+DE+ H+ FG + Sbjct: 177 WDMPYLGMQVLIEG-LALAAFGMIRDTTDKPLPK---QILAYVMQDEARHVAFGRMALRD 232 Query: 245 IKIENPHLWTKEFQQKSRTMLH 266 + +E ++ + Sbjct: 233 YYRQLTDAELREREEFVIEGCY 254 >gi|157691164|ref|YP_001485626.1| mannitol-1-phosphate 5-dehydrogenase [Bacillus pumilus SAFR-032] gi|167017353|sp|A8F9Z9|MTLD_BACP2 RecName: Full=Mannitol-1-phosphate 5-dehydrogenase gi|157679922|gb|ABV61066.1| mannitol-1-phosphate 5-dehydrogenase [Bacillus pumilus SAFR-032] Length = 373 Score = 41.5 bits (96), Expect = 0.21, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 17/180 (9%) Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNH--WMPTEVPMQDDLALWKS---KNGLTDD-ERL 80 + V++++P+++ + + W+ E D+ LT ER Sbjct: 152 PNAAVDRIVPIQHHE--DILKVSVEPFFEWVIDETGFIGDVPQIDGATFVQDLTPYIERK 209 Query: 81 MIKRNLG-FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139 + N G A+ V I + PE R Q E A+H T Y+I + G Sbjct: 210 LFTVNTGHALAAYVGYQQ--GVQTIKEAVDTPEIR-----QVVEGALH-ETGSYLIDTYG 261 Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199 + E +++ + + T+ SP G D + + + +G+ Sbjct: 262 FKKEEHDAYIQKIIKRFENVFISDEVTRVARSPLRKLGADDRLIGPAKKMKQPVYLIKGI 321 >gi|110834277|ref|YP_693136.1| hypothetical protein ABO_1416 [Alcanivorax borkumensis SK2] gi|110647388|emb|CAL16864.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 370 Score = 41.2 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 31/253 (12%), Positives = 74/253 (29%), Gaps = 43/253 (16%) Query: 68 WKSKNGLTDDERLMIK-RNLGFFASSE---SLVANNIVLA-IYRHLSNPECRQYLLRQAF 122 W L+D+E+L NL + ++ +V + + + + + Y Q F Sbjct: 103 WSVFESLSDEEKLRFGWHNLAW-TLAQFVHGEQGALLVASQLASCAPSYDAKLYAASQTF 161 Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 +EA H F + + + +D Sbjct: 162 DEARHVEVFTRYL-----------------------QEKVGIFYPVNPNLKLLLDKILSD 198 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 + ++ EG+ A +L + + + ++RDE+ H+ FG++ + Sbjct: 199 PRWDLKFIGMQIIIEGL----ALAAFNTLQMTAQDPQLKQIIHLVIRDEARHVTFGVNYL 254 Query: 243 NQIKIENPHLWTKEFQQKSRT--------MLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294 +E Q + ++ E + + + + Q Sbjct: 255 ESFVETLTEEEKEERAQFAFEACVVMRERLISTEVFEEFGWNADEAREQVLSST--IMVQ 312 Query: 295 YMQFIANRRCHQI 307 + + R + Sbjct: 313 FRNLLFTRIMPNL 325 >gi|332529283|ref|ZP_08405246.1| hypothetical protein HGR_05216 [Hylemonella gracilis ATCC 19624] gi|332041293|gb|EGI77656.1| hypothetical protein HGR_05216 [Hylemonella gracilis ATCC 19624] Length = 411 Score = 41.2 bits (95), Expect = 0.23, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 86/285 (30%), Gaps = 52/285 (18%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES---LVAN 98 A E Y A N W P V W + I + + + +E+ LV Sbjct: 147 AAELYAQAVNAQWNPDTV------IDWDDAPEPPPEIEDAIVQVMTYMIENENAALLVPA 200 Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158 + ++ H E + L Q +EA H F I G + Sbjct: 201 RFLGQLHPHYR--ELQAALAIQVADEARHIDVFTRRIRRHGREPA--------------- 243 Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218 LS+ K E + F + G F +L + Sbjct: 244 ----------LSTAGGQASLKSLLDEPDFSVASFLLSVLG---EGSFVNLLQFLQTEAPD 290 Query: 219 GIAEQY-QYIMRDESLHLNFG-IDVINQIKIE--NPHLWTKEFQQKSRTMLHEATLLEIA 274 + Q + RDE+ H+ G ++ ++ E H + Q+ + A L E Sbjct: 291 PLTRQICRLAARDEARHVALGMSHLLYRLAREPGFQHRLAQSVAQRHDALAGTAGLNEEV 350 Query: 275 Y------AHETMPKGFVGLNAPSCEQYMQFIANRR---CHQIGLE 310 + A + + +Q M+ +A+ R ++G Sbjct: 351 FDALILVAAGELTPTAIARGYARVQQLMRDMADGRYAKLVRLGFA 395 >gi|239815757|ref|YP_002944667.1| hypothetical protein Vapar_2779 [Variovorax paradoxus S110] gi|239802334|gb|ACS19401.1| hypothetical protein Vapar_2779 [Variovorax paradoxus S110] Length = 302 Score = 41.2 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 63/225 (28%), Gaps = 35/225 (15%) Query: 37 LKYGWAWEKYLSACNNHWMP-TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95 ++Y W A + W P ++ DL K L + R A E Sbjct: 22 IEYPEVWRLCTQARDLAWNPIADIDYS-DLQ----KADLPPEVRKAGAEWWSLRAWMEHG 76 Query: 96 VANNIVLAIYRHLSNP---ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152 + + E +Q++ EE H I +L Sbjct: 77 ATPYGAERLREAIFQHQPFEVKQHITNFIAEEFRHHEASFRIADALA------------- 123 Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212 +Y S F E + F+ + + L Sbjct: 124 -----------EYEPMPRSDYFKDIIPRFHDESDEKAMSFFAGLSVNTLFEQLSGDLLQA 172 Query: 213 R--ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 R + I E + I+RDE+ H+ FG ++ + E P + Sbjct: 173 RYENARFDSIREVCRLILRDEARHIQFGRIIMRRFFSELPSEEKR 217 >gi|195391948|ref|XP_002054621.1| GJ22707 [Drosophila virilis] gi|194152707|gb|EDW68141.1| GJ22707 [Drosophila virilis] Length = 857 Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76 P K+ +W Y W+P +VP DD+ + L+D Sbjct: 732 FPFKHPDSWRAYPYHWA--WLPQAKVPFSDDIKD-QVLPQLSD 771 >gi|195062926|ref|XP_001996279.1| GH22280 [Drosophila grimshawi] gi|193899774|gb|EDV98640.1| GH22280 [Drosophila grimshawi] Length = 756 Score = 41.2 bits (95), Expect = 0.25, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76 P K+ +W Y W+P +VP DD+ + L+D Sbjct: 631 FPFKHPDSWRAYPYHWA--WLPQAKVPFSDDIKD-QVLPQLSD 670 >gi|302539431|ref|ZP_07291773.1| VlmB [Streptomyces sp. C] gi|302448326|gb|EFL20142.1| VlmB [Streptomyces sp. C] Length = 327 Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 17/198 (8%) Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172 +++ Q +EA H+ F+ + LG+ E L +E + YT+ + +P Sbjct: 103 EQEFFTTQVVDEARHAMIFRKHLVDLGVPEAGLLGFIKEQGA---------DYTRRVLNP 153 Query: 173 --SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM-VGIAEQYQYIMR 229 F TG + +F+ + VF +V EG+ A LS + + AE + Sbjct: 154 IAEFATGVVRDEGDFIGAVAVFTIVIEGVLAP---AAELSERKWTLLDPAAAEIARGASI 210 Query: 230 DESLHLNFGIDVINQIKIENPHLWTK--EFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 DE HL G ++ + NP + E ++ R + E E E + + + Sbjct: 211 DEIRHLTVGSSIVREHLARNPSYRPRLIELIRRGRRLWDELPSEEFVLEREELFQQGMFA 270 Query: 288 NAPSCEQYMQFIANRRCH 305 +A Y F R Sbjct: 271 HAELLRDYEVFPGCRLLE 288 >gi|309805923|ref|ZP_07699955.1| putative ribonucleoside-diphosphate reductase 2 subunit beta [Lactobacillus iners LactinV 03V1-b] gi|308167699|gb|EFO69846.1| putative ribonucleoside-diphosphate reductase 2 subunit beta [Lactobacillus iners LactinV 03V1-b] Length = 99 Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 6/88 (6%) Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPF 320 +L++ LE AY E + A ++ + A + +G + F E + Sbjct: 3 FALLYKLIDLEKAYLRELYKGFDI---AEDAIRFSIYNAGKFLQNLGYDSPFTEAETHIA 59 Query: 321 PWMSEVIDL--KKEKNFFETRVTEYQQG 346 P + + + +FF + Y G Sbjct: 60 PEVLAQLSARADENHDFFSGNGSSYVMG 87 >gi|157105736|ref|XP_001649004.1| phosphatidylinositol 4-kinase type-ii [Aedes aegypti] gi|108880035|gb|EAT44260.1| phosphatidylinositol 4-kinase type-ii [Aedes aegypti] Length = 556 Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 12/68 (17%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT-EV 59 M NT + +Q E R+ D + P K+ +W Y W+P ++ Sbjct: 403 MTENTDWNLVQLPEIRIAAIDNGLA---------FPFKHPDSWRAYPYHWA--WLPQAKI 451 Query: 60 PMQDDLAL 67 P D+ Sbjct: 452 PFSQDIKD 459 >gi|254429013|ref|ZP_05042720.1| hypothetical protein ADG881_2243 [Alcanivorax sp. DG881] gi|196195182|gb|EDX90141.1| hypothetical protein ADG881_2243 [Alcanivorax sp. DG881] Length = 372 Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 28/183 (15%), Positives = 60/183 (32%), Gaps = 33/183 (18%) Query: 68 WKSKNGLTDDERLMI---KRNLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFE 123 W + L++DE+L +V + + + + Y Q F+ Sbjct: 105 WDTFEALSEDEKLRFGWHNLAWMLAQFVHGEQGALLVASQLASCAPTYDAKLYAASQTFD 164 Query: 124 EAVHSHTFQ-YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182 EA H F Y+ +G+ +Y P++ + + L D Sbjct: 165 EARHVEVFTRYLQEKIGI-------LYPVNPNLKSLLDKILS-----------------D 200 Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242 + ++ EG F + + + + ++RDE+ H+ FG++ + Sbjct: 201 PRWDLKFIGMQIIIEG-LALAAFNTLKMTAQDPLLK---QIIHLVIRDEARHVTFGVNYL 256 Query: 243 NQI 245 Sbjct: 257 EDF 259 >gi|145638051|ref|ZP_01793677.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittHH] gi|145268754|gb|EDK08731.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittHH] Length = 73 Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 3/71 (4%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D + Sbjct: 6 FSQNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYA- 64 Query: 71 KNGLTDDERLM 81 L + E+ + Sbjct: 65 --ALPEHEKHI 73 >gi|195451115|ref|XP_002072774.1| GK13780 [Drosophila willistoni] gi|194168859|gb|EDW83760.1| GK13780 [Drosophila willistoni] Length = 838 Score = 40.8 bits (94), Expect = 0.36, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76 P K+ +W Y W+P +VP +D+ L+D Sbjct: 713 FPFKHPDSWRAYPYHWA--WLPQAKVPFSEDIKD-HVLPQLSD 752 >gi|294631375|ref|ZP_06709935.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292834708|gb|EFF93057.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 375 Score = 40.8 bits (94), Expect = 0.37, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 51/213 (23%), Gaps = 28/213 (13%) Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHLSNPEC 113 P E + W E + F I I + + Sbjct: 74 TPEEAMILHGTPYWSRMTDRDKGELRRHFASWQFSQFLHGEQGAMICAARIVESAPDLDA 133 Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173 + Y Q +EA H+ + + + Sbjct: 134 KFYSATQTMDEARHAEIYARFL-----------------------HEKIGLVYPIDDNLR 170 Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233 G D + V+ EG+ A + + Y+M+DE+ Sbjct: 171 SLLGDTLRDSRWDMPYLGMQVLIEGL----ALAAFGMIRDTTHKPLPRQILAYVMQDEAR 226 Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 H+ FG + + +E ++ H Sbjct: 227 HVAFGRMALRDYYKQLTDAELREREEFVIEGCH 259 >gi|254382285|ref|ZP_04997645.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194341190|gb|EDX22156.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 390 Score = 40.4 bits (93), Expect = 0.40, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 46/202 (22%), Gaps = 28/202 (13%) Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124 W E F I + + + + Y Q +E Sbjct: 80 RHWAKLTEKDKGELRRHYTAWNFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A H+ F + S G D Sbjct: 140 ARHAEIFGRFL-----------------------HEKVGMLYPVNDSLQGLLGDTLRDSR 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V+ EG F I + Y+M+DE+ H+ FG + Sbjct: 177 WDMPYLGMQVLIEG-LALAAFGMIRDTTDKPLPK---QILAYVMQDEARHVAFGRMALRD 232 Query: 245 IKIENPHLWTKEFQQKSRTMLH 266 + +E ++ H Sbjct: 233 YYKQLTDAELREREEFVIEGCH 254 >gi|29829495|ref|NP_824129.1| hypothetical protein SAV_2953 [Streptomyces avermitilis MA-4680] gi|29606603|dbj|BAC70664.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 368 Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 47/200 (23%), Gaps = 28/200 (14%) Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEEAV 126 W E + F I + + + + Y Q +EA Sbjct: 82 WAKLTDRDKGELRKHYASWQFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDEAR 141 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 H+ + + + G D + Sbjct: 142 HAEIYGRFL-----------------------HEKIGMLYPVNDNLQALLGDTLRDARWD 178 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 V+ EG F I + YIM+DE+ H+ FG + Sbjct: 179 MPYLGMQVLIEG-LALAAFGMIRDTTDKPLPK---QILAYIMQDEARHVAFGRMALRDYY 234 Query: 247 IENPHLWTKEFQQKSRTMLH 266 + +E ++ + Sbjct: 235 SQLSDAELREREEFVIEGCY 254 >gi|289643180|ref|ZP_06475308.1| conserved hypothetical protein [Frankia symbiont of Datisca glomerata] gi|289507011|gb|EFD27982.1| conserved hypothetical protein [Frankia symbiont of Datisca glomerata] Length = 377 Score = 40.0 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 23/197 (11%), Positives = 54/197 (27%), Gaps = 31/197 (15%) Query: 73 GLTDDERLMIKR---NLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128 L + ER+ ++R + + + + + + Y Q +EA H Sbjct: 81 RLPEAERITVRRHLAGWLYSQFLHGEQGALVCAAKVVQTVPDIASKFYAATQVVDEARHV 140 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 +Q ++ + + + T D + Sbjct: 141 EAYQRML-----------------------HDKIKVHYPISAGLRGLLETTIGDSRWDIT 177 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248 V+ EG+ A + Y+++DE+ H+ FG + + Sbjct: 178 YLGMQVMIEGL----ALASFSIQRDRMRDPLARALNAYVLQDEARHVAFGRLALRDYYGQ 233 Query: 249 NPHLWTKEFQQKSRTML 265 +E + + Sbjct: 234 LSTAELREREDFAVEAC 250 >gi|239944254|ref|ZP_04696191.1| hypothetical protein SrosN15_24850 [Streptomyces roseosporus NRRL 15998] gi|239990709|ref|ZP_04711373.1| hypothetical protein SrosN1_25607 [Streptomyces roseosporus NRRL 11379] gi|291447725|ref|ZP_06587115.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291350672|gb|EFE77576.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 370 Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats. Identities = 22/202 (10%), Positives = 48/202 (23%), Gaps = 28/202 (13%) Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124 W + + F I + + + + Y Q +E Sbjct: 80 PHWAKMTEKDRGQLRKHYTSWQFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A H+ + + + G D Sbjct: 140 ARHAEIYGRFL-----------------------HEKIGMLYPVNDNLRGLLGDTLRDSR 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V+ EG+ A + + Y+M+DE+ H+ FG + Sbjct: 177 WDMPYLGMQVLIEGL----ALAAFGMIRDTTTKPLPKQILAYVMQDEARHVAFGRMALRD 232 Query: 245 IKIENPHLWTKEFQQKSRTMLH 266 + +E ++ + Sbjct: 233 YYKQLSDAELREREEFVIEGCY 254 >gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62] gi|254040830|gb|ACT57626.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62] Length = 30 Score = 40.0 bits (92), Expect = 0.63, Method: Composition-based stats. Identities = 24/25 (96%), Positives = 25/25 (100%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRML 25 MANNTGLSPIQAGEKRVNVDDKR+L Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRIL 25 >gi|269126485|ref|YP_003299855.1| putative metal-dependent hydrolase [Thermomonospora curvata DSM 43183] gi|268311443|gb|ACY97817.1| putative metal-dependent hydrolase [Thermomonospora curvata DSM 43183] Length = 311 Score = 39.6 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 53/177 (29%), Gaps = 21/177 (11%) Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133 L + E+ I N V A ++++ RQ + +E VHS + Q Sbjct: 55 LPEGEKWFI----------------NCVKAAMPYITDERLRQEIKGFIGQEMVHSRSHQG 98 Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193 +I L L G + P+ A W + + + Y Sbjct: 99 VIDKLLLANG-IDATVVTKPAAQGNAEWPAKMEALKKRHPRLYKQRLLFELGAVAAIEHY 157 Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250 G W L A + + ++ +E H + DV + + P Sbjct: 158 TAVLGQW----VMDNDKLDAAGVDPTMLDLLRWHGAEEVEHRSVVFDVYRHLGGKYP 210 >gi|330835553|ref|YP_004410281.1| hypothetical protein Mcup_1694 [Metallosphaera cuprina Ar-4] gi|329567692|gb|AEB95797.1| conserved hypothetical protein [Metallosphaera cuprina Ar-4] Length = 335 Score = 39.6 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 79/223 (35%), Gaps = 12/223 (5%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE--SLVANN 99 AW+ Y A W ++ + + +GL +RL I ++ + + V Sbjct: 29 AWQLYRRAKREQWDEEDIDWNK---IKEIASGLDRKQRLAIAYWWSLLSNFDNATPVFAY 85 Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159 V+ + H + R L ++E H+ I S+ F + + + KA Sbjct: 86 AVIKGFEHHLDTAVRGILTTITYDENRHNMVCGLSIDSMMRGFPFQF---KPMDDLERKA 142 Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 +++T + + + + L LF +++ E ++ + +K+ Sbjct: 143 MLNVEWTWYNGARYWRAYLEAYSKYTLDVLFTSFMMGEA----AATTVFTTMSKGSKIEE 198 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262 + + ++ DE+ H F ++ K ++ R Sbjct: 199 MRKAFRNTAVDETRHYAFTHLIMTDGASRMTDEQRKLVTKQVR 241 >gi|52550536|gb|AAU84385.1| transposase [uncultured archaeon GZfos9E5] Length = 398 Score = 39.6 bits (91), Expect = 0.73, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 8/76 (10%) Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAW--------EKYLSACNNHWMPTEVPM 61 I+ G + + + + + R+ L L E Y A W +V + Sbjct: 81 IENGTEVLRLRKRGVPAPRTVRYHLEKLVIDDILSQFNGISEELYRIAKKQRWFVNKVDL 140 Query: 62 QDDLALWKSKNGLTDD 77 D+ W + D+ Sbjct: 141 SIDIHDWMYYGDIDDE 156 >gi|330718348|ref|ZP_08312948.1| ribonucleoside-diphosphate reductase beta subunit [Leuconostoc fallax KCTC 3537] Length = 94 Score = 39.6 bits (91), Expect = 0.79, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98 + N W+ T VP+ +D W+ L DE + ++L A+ ES + Sbjct: 24 WQQMVANFWLDTRVPVIEDKTGWE---ALAQDEHDALAQSLADLATLESFQSE 73 >gi|240173220|ref|ZP_04751878.1| hypothetical protein MkanA1_28156 [Mycobacterium kansasii ATCC 12478] Length = 366 Score = 39.6 bits (91), Expect = 0.82, Method: Composition-based stats. Identities = 30/257 (11%), Positives = 65/257 (25%), Gaps = 54/257 (21%) Query: 38 KYGWAWE--------KYLSACNNHWMPT-EVPMQDDL------------------ALWKS 70 ++ W ++ Y + W + D+ +W + Sbjct: 25 RFTWEYDDGRARLLSLYQKGKDKQWDAQSRIDWAQDVDPHNPVGLPDEFHPLFGSPMWDA 84 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 + E + F I + + + + Y Q +EA H Sbjct: 85 ADDARRAEMRQHFQAWQFSQFLHGEQGAMVCAAKIVEVVPDLDAKFYAATQTMDEARHVE 144 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 F + K + + L + G D + Sbjct: 145 AFSRFL--------------------QDKVDLVYPINKHL---TALLGDTLRDSRWDMPY 181 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 V+ EG F + + + + + Y+M+DE+ H+ FG + Sbjct: 182 LGMQVLIEG-LALAAFGVLRDMAPPDSLAK--QLLAYVMQDEARHVAFGRISLKDYYSAL 238 Query: 250 PHLWTKEFQQKSRTMLH 266 E ++ + Sbjct: 239 TEAERDEREEFVVDACY 255 >gi|302536897|ref|ZP_07289239.1| conserved hypothetical protein [Streptomyces sp. C] gi|302445792|gb|EFL17608.1| conserved hypothetical protein [Streptomyces sp. C] Length = 368 Score = 39.2 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 26/202 (12%), Positives = 46/202 (22%), Gaps = 28/202 (13%) Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124 W E F I + + + + Y Q +E Sbjct: 80 RHWAKMTERDKGELRRHYSAWNFSQFLHGEQGAMVCAARIVESVPDLDAKFYSATQTMDE 139 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A H+ F + S G D Sbjct: 140 ARHAEIFGRFL-----------------------HEKVGMLYPINDSLQGLLGDTLRDSR 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244 + V+ EG F I + Y+M+DE+ H+ FG + Sbjct: 177 WDMPYLGMQVLIEG-LALAAFGMIRDTTDKPLPK---QILAYVMQDEARHVAFGRMALRD 232 Query: 245 IKIENPHLWTKEFQQKSRTMLH 266 + +E ++ + Sbjct: 233 YYKQLTDAELREREEFVIEGCY 254 >gi|296170282|ref|ZP_06851873.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895005|gb|EFG74724.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 366 Score = 39.2 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 30/257 (11%), Positives = 66/257 (25%), Gaps = 54/257 (21%) Query: 38 KYGWAWE--------KYLSACNNHWMPT-EVPMQDDL------------------ALWKS 70 ++ W ++ Y + W + D+ +W + Sbjct: 25 RFTWEYDEGRARLLSLYQKGKDKQWDAQSRIDWAQDVDPMNPVGLPDEFHPLFGSPMWDA 84 Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129 + E + I + + + + Y Q +EA H Sbjct: 85 ADDARRAEMRQHFQAWQLSQFLHGEQGAMVCAAKIVEVVPDLDAKFYAATQTMDEARHVE 144 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 F ++ KA + L++ T D + Sbjct: 145 AFSRLL--------------------QEKAGLVYPINKHLTALLDDTL---RDSRWDMPY 181 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249 V+ EG F + + + + + Y+M+DE+ H+ FG + Sbjct: 182 LGMQVLIEG-LALAAFGVLRDMAAPDSLAK--QVLAYVMQDEARHVAFGRISLKDYYSAL 238 Query: 250 PHLWTKEFQQKSRTMLH 266 E ++ + Sbjct: 239 TEAERDEREEFVVDACY 255 >gi|297170371|gb|ADI21405.1| hypothetical protein [uncultured gamma proteobacterium HF0010_21A16] Length = 390 Score = 39.2 bits (90), Expect = 0.99, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 34/208 (16%) Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL----SNPECRQYL 117 ++L WK+ LTD+E++ R+ S+ L L + + + Y Sbjct: 98 HEELDAWKN---LTDEEKIEFDRHETAEVLSQFLHGEQGALLVASQIVSCAPTFNAKMYA 154 Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177 Q F+EA H F + + + Sbjct: 155 ASQTFDEARHVEVFNRYL-----------------------QEKVGFHYPINPNLKALLD 191 Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237 D+ + ++ EG+ + L + ++ Y++RDE+ H+ F Sbjct: 192 KILTDERWDLKFIGMQIIIEGLALAA--FTNMKLSARDSLLKT--LLHYVIRDEARHVTF 247 Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTML 265 GI+ + +E Q + Sbjct: 248 GINYLEDFVKTLSPEEIEERAQFAYEAC 275 >gi|240170482|ref|ZP_04749141.1| hypothetical protein MkanA1_14310 [Mycobacterium kansasii ATCC 12478] Length = 423 Score = 39.2 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 37/295 (12%), Positives = 79/295 (26%), Gaps = 65/295 (22%) Query: 39 YGWAWEKYLSACNNHW-----MPTEVPMQDDLALWKSKNG--------------LTD-DE 78 + ++ Y A + W +P E+ + D + LT +E Sbjct: 83 FAEMYDLYRRAVSKQWDGNADLPWELDVTPDNPDAQILPRSFVPFKEIEGFGVRLTALEE 142 Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSN----PECRQYLLRQAFEEAVHSHTFQYI 134 R + + S+ + L ++ + + Y Q +E H F Sbjct: 143 RNLTWDIAAWL-LSQFMHGEQGALFASAQVTECVHWTDAKLYGATQVMDEGRHLEVFLRY 201 Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194 + + K L T G D + Sbjct: 202 LDT-----------------KLEKIYTVNDNLFVLIDELMTDGRWD------FKFLGMQI 238 Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN-QIKIENPHLW 253 + EG F I R + + + +++DE+ H+++G+ + I Sbjct: 239 MIEG-LALGAFTTIFQQTREPLLK---QLLKMVIQDEARHVHYGVLALRDHITQNISEKE 294 Query: 254 TKEFQQKSRT---------MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299 +E + ++HE + +P ++F Sbjct: 295 RREREDWVYEVALLMRNRFLMHEVYE---EWFSHKVPLKVWDQQMLDSPSMVKFR 346 >gi|83859232|ref|ZP_00952753.1| hypothetical protein OA2633_12545 [Oceanicaulis alexandrii HTCC2633] gi|83852679|gb|EAP90532.1| hypothetical protein OA2633_12545 [Oceanicaulis alexandrii HTCC2633] Length = 374 Score = 39.2 bits (90), Expect = 1.0, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 56/200 (28%), Gaps = 29/200 (14%) Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL-AIYRHLSNPECRQYLLRQAFEEAV 126 W E ++ + A + I + + + + + Y Q +EA Sbjct: 83 WNKMTKKERIELRRHTQSWNISQFLQGEQAALLAASKIVQAVPDLDAKFYAATQVMDEAR 142 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 H ++ ++ G+ Y + N AL D + Sbjct: 143 HVEAYRKLLGKFGV-------AYPMTDPLQGLVNDALS-----------------DSRWD 178 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 VV EG F I L + Y+M DE+ H+ FG + Sbjct: 179 VTYLAMQVVIEG-LALAAFGTIRDLAQNPL---ARMVNAYVMEDEARHVAFGRLSLRDYY 234 Query: 247 IENPHLWTKEFQQKSRTMLH 266 + E ++ + Sbjct: 235 PQLTQKERDEREEFLVEACY 254 >gi|307327874|ref|ZP_07607056.1| conserved hypothetical protein [Streptomyces violaceusniger Tu 4113] gi|306886392|gb|EFN17396.1| conserved hypothetical protein [Streptomyces violaceusniger Tu 4113] Length = 371 Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 49/208 (23%), Gaps = 40/208 (19%) Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANN-IVLAIYRHLSNPECRQYLLRQAFEE 124 W E F I + + + Y Q +E Sbjct: 80 RHWDRMTERDKGELRHHVAAWQFSQFLHGEQGAMVCAARIVEAAPDLDAKFYSATQTMDE 139 Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184 A H+ + + + + + G D Sbjct: 140 ARHAELYSRFL-----------------------HDKLGTFYPINTDLRTLLGDTLRDSR 176 Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA------EQYQYIMRDESLHLNFG 238 + V+ EG L+L + + Y+M+DE+ H+ FG Sbjct: 177 WDMAYLGMQVLIEG----------LALAAFGLIRDTTDKPLPQQILAYVMQDEARHVAFG 226 Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLH 266 + + +E ++ + Sbjct: 227 RMALRDYYRQLSDAELREREEFVIEGCY 254 >gi|289810083|ref|ZP_06540712.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 102 Score = 38.8 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 4/74 (5%) Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70 + K + + +V + KY + + W P EV + D +++ Sbjct: 6 FSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA 65 Query: 71 KNGLTDDERLMIKR 84 ++R Sbjct: 66 L----PEQRKTYLH 75 >gi|256844765|ref|ZP_05550247.1| ribonucleotide-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] gi|256613113|gb|EEU18320.1| ribonucleotide-diphosphate reductase, beta subunit [Lactobacillus crispatus 125-2-CHN] Length = 64 Score = 38.5 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 8/63 (12%) Query: 298 FIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AEL 349 + A + +G + F E +P + + +FF + Y G + Sbjct: 1 YNAGKFLQNLGYDSPFTAEETYVSPEVFAQLSAQADENHDFFSGNGSSYVMGTGEETTDD 60 Query: 350 KWD 352 WD Sbjct: 61 DWD 63 >gi|297172511|gb|ADI23482.1| hypothetical protein [uncultured gamma proteobacterium HF0770_40P16] Length = 386 Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 61/199 (30%), Gaps = 31/199 (15%) Query: 71 KNGLTDDERLMIKR---NLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFEEAV 126 L +++RL R +V + + + + Y Q F+EA Sbjct: 96 LAALPEEDRLEYMRHDQAWALSQFLHGEQGALLVASQLVSCAPTYQAKLYAASQTFDEAR 155 Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186 H F + + K AL +TL+ P + Sbjct: 156 HVEVFARYL-----------QRIHGLEYPINKNLKALL-DKTLTDPRWDL---------- 193 Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246 +V EG+ A + + + + Y++RDE+ H+ FGI+ + + Sbjct: 194 -KFIGMQIVIEGL----ALAAFQTTKETSNCPLLRQLVHYVIRDEARHVTFGINYLTEFL 248 Query: 247 IENPHLWTKEFQQKSRTML 265 +E Q + Sbjct: 249 QTLSKEEIEERAQFAYEAC 267 >gi|154250479|ref|YP_001411303.1| hypothetical protein Plav_0023 [Parvibaculum lavamentivorans DS-1] gi|154154429|gb|ABS61646.1| hypothetical protein Plav_0023 [Parvibaculum lavamentivorans DS-1] Length = 373 Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 70/235 (29%), Gaps = 36/235 (15%) Query: 70 SKNGLTDDERLMI---KRNLGFFASSESLVAN-NIVLAIYRHLSNPECRQYLLRQAFEEA 125 S L++ E++ A N+ ++ L +P ++Y QA EEA Sbjct: 83 SFEKLSEKEKVRFVNETARWMMSAILHGEQGALNLSASLCHILLDPGAQEYAANQAREEA 142 Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 H F + + + +P AN + +E Sbjct: 143 RHVTAFAKYVQA---------RWGKPLPCGETLANLLAEMVNA--------------KEV 179 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI----DV 241 + + ++ EG FA + R +V + + M DE+ H FG Sbjct: 180 YKKIVGMQLLVEG-LAMGTFATFFNTARDPLLVKLCQ---LAMTDEAFHHKFGKIWADRT 235 Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET-MPKGFVGLNAPSCEQY 295 I ++ E + +T+L E + + A E Sbjct: 236 IPKLSQEERDIIEDWAASVFQTLLFNLVNPEQKKLIYADFGLDWKQVQAEMLEAV 290 >gi|186684872|ref|YP_001868068.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] gi|186467324|gb|ACC83125.1| multi-sensor signal transduction histidine kinase [Nostoc punctiforme PCC 73102] Length = 1102 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 16 RVNVDDKRMLNAR--SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65 R VD + + + SD QL P + W + A W E+ + D+ Sbjct: 357 RNEVDTETLWAGQYDSDQRQLYPRRSFEVWRESKKAQAQKWTVEEIELARDI 408 >gi|68076111|ref|XP_679975.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56500834|emb|CAI05073.1| conserved hypothetical protein [Plasmodium berghei] Length = 319 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 59/187 (31%), Gaps = 17/187 (9%) Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF--------EEAVHSHTFQYI 134 + + S +VA +L + + + ++ F E + + I Sbjct: 66 FKIIISLNSQCKMVALECLLNLSAQIPTELIERNIVEILFDMIKDEEKIEENYIDMYIMI 125 Query: 135 ITSL---------GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 I+++ LD E +Y S++ N L + +PS D Sbjct: 126 ISNITRCKEGIYKILDINEEGQIYHNTFSVSYYLNKLLFFYFQPITPSINKNMSDKYMHV 185 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245 L + E M F+ A + L ++ + + + SLH + + Sbjct: 186 SHILINISSIKESMPFFKNVAFLNKLSEQILILERCRTFLPFIMNLSLHKDIHDFIFQSD 245 Query: 246 KIENPHL 252 P+L Sbjct: 246 CNMFPYL 252 >gi|146303168|ref|YP_001190484.1| hypothetical protein Msed_0383 [Metallosphaera sedula DSM 5348] gi|145701418|gb|ABP94560.1| hypothetical protein Msed_0383 [Metallosphaera sedula DSM 5348] Length = 335 Score = 38.1 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 78/227 (34%), Gaps = 20/227 (8%) Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSK----NGLTDDERLMIKRNLGFFASSE--SL 95 AW+ Y A W ++ W +GL +RL I ++ + + Sbjct: 29 AWQLYRRAKREQWDEEDIN-------WDRVREIASGLDRKQRLAIAYWWSLLSNFDNATP 81 Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155 V + V+ + H + R L ++E H+ I S+ F + + Sbjct: 82 VFAHAVIKGFEHHLDTAVRGILTTITYDENRHNMVCGLAIDSMMRGFPFQF---KPQDDL 138 Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215 KA +++T + + + + L LF +++ E ++ R Sbjct: 139 ERKAMLNVEWTWYNGARYWKAYLEAYKKYTLDVLFTSFMMGEA----AATTVFTTMSRGA 194 Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262 K+ ++ ++ DE+ H F ++ Q + ++ R Sbjct: 195 KLEEFSKAFRNTAVDETRHYAFTHLIMTQGASRMNDEQKRLVTKQVR 241 >gi|271967782|ref|YP_003341978.1| hypothetical protein Sros_6522 [Streptosporangium roseum DSM 43021] gi|270510957|gb|ACZ89235.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 371 Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 56/211 (26%), Gaps = 46/211 (21%) Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI-VLAIYRHLSNPECRQYLLRQAFEE 124 LW + E + F I I + + + + Y Q +E Sbjct: 80 PLWDRMDARQRQEVRLHGAAWQFSQFLHGEQGAMICSARIVESVPDLDSKFYAATQTMDE 139 Query: 125 AVHSHTFQYIITS---LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 A H+ T+ + L E + ++ + Q Sbjct: 140 ARHAETYARFLQEKVGLAYPINEHLKALLDNTLSDSRWDMPYLGMQ-------------- 185 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA------EQYQYIMRDESLHL 235 V+ EG L+L M I + Y+M+DE+ H+ Sbjct: 186 ------------VLIEG----------LALAAFGVMRDITTKPLPKQILAYVMQDEARHV 223 Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266 FG + + +E + + Sbjct: 224 AFGRMALRDYYSQLTETELREREDFVIEGCY 254 >gi|330971158|gb|EGH71224.1| hypothetical protein PSYAR_11719 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 25 Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 17/21 (80%), Positives = 19/21 (90%) Query: 317 ENPFPWMSEVIDLKKEKNFFE 337 NPFPWMSE+I LKKE+NFFE Sbjct: 1 TNPFPWMSEIIALKKERNFFE 21 >gi|168044511|ref|XP_001774724.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673879|gb|EDQ60395.1| predicted protein [Physcomitrella patens subsp. patens] Length = 662 Score = 37.7 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 12/88 (13%) Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL-------E 310 Q++ M+ EA +A E S E Y+ + N+ ++G E Sbjct: 539 QEEIDRMVQEA----EEFAEEDKKVKERIDARNSLETYVYNMKNQLGDKLGEKISAEDKE 594 Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFET 338 + + W+ E +KE +F E Sbjct: 595 TIETAMKEALEWLDENQSAEKE-DFQEK 621 >gi|194767627|ref|XP_001965916.1| GF11648 [Drosophila ananassae] gi|190619759|gb|EDV35283.1| GF11648 [Drosophila ananassae] Length = 678 Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%) Query: 35 LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76 P K+ +W Y W+P ++P +D+ L+D Sbjct: 553 FPFKHPDSWRAYPYHWA--WLPQAKIPFSEDIKK-HVLPQLSD 592 >gi|295697256|ref|YP_003590494.1| hypothetical protein Btus_2700 [Bacillus tusciae DSM 2912] gi|295412858|gb|ADG07350.1| hypothetical protein Btus_2700 [Bacillus tusciae DSM 2912] Length = 374 Score = 37.7 bits (86), Expect = 3.0, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 5/67 (7%) Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNI---VLAIYRHLSNPECRQYLLRQAFEE 124 W+ L +D + +N E + + V I E + +L Q +E Sbjct: 132 WEKLKPLPEDLEKAVCQNCTLLTQVEFVAGDFPSKWVWRIPNDFF--EVKAFLSTQMMDE 189 Query: 125 AVHSHTF 131 A H+ F Sbjct: 190 ARHTEVF 196 >gi|256377693|ref|YP_003101353.1| hypothetical protein Amir_3618 [Actinosynnema mirum DSM 43827] gi|255921996|gb|ACU37507.1| conserved hypothetical protein [Actinosynnema mirum DSM 43827] Length = 315 Score = 37.3 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 18/193 (9%) Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ-YIITS 137 R + + F +E V + + N ++ Q +EA H+ F+ +II Sbjct: 69 RDALIQEFAFRTIAEEKVTRAL-GHLVAAAPNRVMTEFFSTQLLDEARHARVFRDHIIE- 126 Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSP--SFTTGTKDADQEFLQDLFVFYVV 195 +G+ E E+ ++ EV A + +T+ P +F +F + ++ Sbjct: 127 VGVPEAEVDDVITEV---------AGKAIETVLDPLEAFGVSVIRDQGDFYGGVITLTIL 177 Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255 EG+ G + AE + DE HL+ G VI + E P + Sbjct: 178 VEGVLAPFGELSERKWVELD--PAGAEIERGAGMDEIRHLSVGSSVIKRHLQEQPGERMR 235 Query: 256 --EFQQKSRTMLH 266 E Q+ R + Sbjct: 236 VLELIQRGRALWE 248 >gi|254515463|ref|ZP_05127523.1| conserved hypothetical protein [gamma proteobacterium NOR5-3] gi|219675185|gb|EED31551.1| conserved hypothetical protein [gamma proteobacterium NOR5-3] Length = 441 Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 62/221 (28%), Gaps = 38/221 (17%) Query: 54 WMPTEV---PMQDDLALWKSKNGL-----TDDERLMIKRNLGFFASSESLVANNIVLA-I 104 W P EV + + L ++ L T DE + +V + + Sbjct: 109 W-PEEVRSPELMN-LHDYEPYLDLAMDEKTKDEFWLHMNAWSLSQFLHGEQGALLVASQL 166 Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164 + Y Q F+EA H F + + + MY + + + L Sbjct: 167 CSCAPTLSAKLYAGSQTFDEARHVEVFNKYL------QKRIGVMYPINTHLKSIIDKIL- 219 Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224 D + +V EG + F + + Sbjct: 220 ----------------TDPRWDLKFIGMQIVIEG-LALSAFNTT---RETTPDPVLKDVV 259 Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265 + RDE+ H+ FG++ + +E Q + Sbjct: 260 YLVTRDEARHVTFGVNYLEDFLKTLSEEEIEERAQFAYEAC 300 >gi|149922477|ref|ZP_01910909.1| hypothetical protein PPSIR1_26928 [Plesiocystis pacifica SIR-1] gi|149816672|gb|EDM76164.1| hypothetical protein PPSIR1_26928 [Plesiocystis pacifica SIR-1] Length = 384 Score = 36.9 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 67/253 (26%), Gaps = 44/253 (17%) Query: 74 LTDDERL--MIKRNLGFFAS-SESLVANNIVLA-IYRHLSNPECRQYLLRQAFEEAVHSH 129 L+ E+ + A + + + + Y Q +E H Sbjct: 118 LSPKEQRELAYSVICWMLSQFLHGEQGALFAAAQVTEAVQFFDGKLYGATQVMDEGRHIE 177 Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189 F + + Q + + D + Sbjct: 178 VFTRYLD-----------------------QKLGRLYQINDNLFVILDSLMTDSRWDMKF 214 Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN-QIKIE 248 ++ EG F + + + E + +++DE+ H+++G+ + Sbjct: 215 LGTQIMIEG-LALGAFGVLYKVTGEPLLR---ELLRMVIQDEARHVHYGVLALREHFTKA 270 Query: 249 NPHLWTKEFQQKSRTML------HEATLLEIAYAHETMPKG---FVGLNAPSCEQYMQFI 299 +E + + + A + + M + AP + + Q + Sbjct: 271 LSERERQEREDWAFEVALLMRNRFMAYEVYEEWFEGRMSREQWRQFITRAPGMKMFRQVM 330 Query: 300 ANRR---CHQIGL 309 +R IGL Sbjct: 331 FSRLVPNLRAIGL 343 >gi|118383784|ref|XP_001025046.1| ARD/ARD' family protein [Tetrahymena thermophila] gi|89306813|gb|EAS04801.1| ARD/ARD' family protein [Tetrahymena thermophila SB210] Length = 400 Score = 36.9 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 58/185 (31%), Gaps = 22/185 (11%) Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185 +H+ + Y+ ++ + + R V S + W + ++ Sbjct: 188 IHAECYHYLFEAVVEMKKLGLEIPRTVSSSSQLRAWYIDENAIGQDGDIRESLHYRSYKW 247 Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE---SLHLNFGIDVI 242 + ++ + E ++ + +Q Y RD+ H ++ Sbjct: 248 VNPEYLATIGVEHWKLDGE-------ENNTELERVCKQRNYSSRDQIKCGNHCENYQQML 300 Query: 243 NQIKIENPHLWTKEFQQKSRTML-----HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297 + + E+ HL ++ R ++ + E + KG + + Y + Sbjct: 301 SNFRKEHIHLD-----EEIRYIIGGSGYFDVRDHEDKWIRIQSVKGDLIVLPEGI--YHR 353 Query: 298 FIANR 302 F ++ Sbjct: 354 FTTDK 358 >gi|262196415|ref|YP_003267624.1| hypothetical protein Hoch_3229 [Haliangium ochraceum DSM 14365] gi|262079762|gb|ACY15731.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365] Length = 408 Score = 36.5 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 32/254 (12%), Positives = 75/254 (29%), Gaps = 44/254 (17%) Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP----ECRQYLLRQAFEEAVHS 128 L++ ER + ++ + S+ L L ++ + + Y Q +E H Sbjct: 133 RLSERERRQLLHSMAAWMLSQFLHGEQGALMAAAQVTEAVQFFDGKLYGSTQVVDEGRHV 192 Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188 F + + + Q + D + Sbjct: 193 EVFHRYLDT-----------------------KLEKLYQINDNLFVIIDALMEDSRWDMK 229 Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN-QIKI 247 ++ EG F + R + E + +++DE+ H+++G+ + + Sbjct: 230 FLGMQIMVEG-LALGAFGVLYQNTREPLLK---ELLRMVIQDEARHVHYGVLALREHFRE 285 Query: 248 ENPHLWTKEFQQKSRTML------HEATLLEIAYAHETMPKGF---VGLNAPSCEQYMQF 298 E + + + A + + + + +P EQ+ Sbjct: 286 ALSERERIEREDWAFEVALLMRNRFMAYEVYEEWFEGSFSRDQWRRFVAASPGFEQFRHV 345 Query: 299 IANRR---CHQIGL 309 + NR +IGL Sbjct: 346 MFNRLVPNLREIGL 359 >gi|289642807|ref|ZP_06474944.1| conserved hypothetical protein [Frankia symbiont of Datisca glomerata] gi|289507376|gb|EFD28338.1| conserved hypothetical protein [Frankia symbiont of Datisca glomerata] Length = 348 Score = 36.5 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 16/164 (9%) Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITS----LGLDEGELFNMYREVPSITAKANWALQYTQ 167 E RQ+L+ F + +H I ++ D F + T A ++ + Sbjct: 73 ELRQHLMAWQFSQFLHGEQGAMICSARIVESVPDMDAKFYAATQTIDETRHAEIYSRFLR 132 Query: 168 TLSSPSFTTG--------TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219 + T +D + V+ EG+ A L A Sbjct: 133 EKIGLLYPINPELRSLLETTLSDSRWDMPYLGMQVLIEGL----ALAAFGVLRDAATAAL 188 Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263 + YIM+DE+ H+ FG + + E ++ Sbjct: 189 PKQILSYIMQDEARHVAFGRLALRDYYAQLSRRELDEREEFVVE 232 >gi|270158514|ref|ZP_06187171.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|289166651|ref|YP_003456789.1| hypothetical protein LLO_3344 [Legionella longbeachae NSW150] gi|269990539|gb|EEZ96793.1| conserved hypothetical protein [Legionella longbeachae D-4968] gi|288859824|emb|CBJ13805.1| hypothetical protein LLO_3344 [Legionella longbeachae NSW150] Length = 706 Score = 36.5 bits (83), Expect = 6.9, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 3/88 (3%) Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138 +L+ A E L + + + NPE ++ + Q +E H+ F II +L Sbjct: 53 KLLYLYVFSLMAQLEVL-GIQLPMRFEDEMHNPELKKRMRAQLVDEIYHAIVFTKIIFTL 111 Query: 139 GLD--EGELFNMYREVPSITAKANWALQ 164 +N E +A L+ Sbjct: 112 CAPYATPPAYNQEIERLCEFIRAQDCLK 139 >gi|170061542|ref|XP_001866278.1| phosphatidylinositol 4-kinase type-ii [Culex quinquefasciatus] gi|167879742|gb|EDS43125.1| phosphatidylinositol 4-kinase type-ii [Culex quinquefasciatus] Length = 501 Score = 36.1 bits (82), Expect = 7.1, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 12/68 (17%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT-EV 59 MA NT + +Q E ++ D + P K+ +W Y W+P + Sbjct: 374 MAENTDWNLVQLPEIKIAAIDNGLA---------FPFKHPDSWRAYPYHWA--WLPQAKN 422 Query: 60 PMQDDLAL 67 P D+ Sbjct: 423 PFSQDIKD 430 >gi|34498114|ref|NP_902329.1| phenylacetic acid degradation protein paaA [Chromobacterium violaceum ATCC 12472] gi|34103969|gb|AAQ60329.1| probable phenylacetic acid degradation protein paaA [Chromobacterium violaceum ATCC 12472] Length = 259 Score = 36.1 bits (82), Expect = 7.5, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 70/193 (36%), Gaps = 30/193 (15%) Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115 P EV + ++ + + D+ R + L E + + + Y + + R Sbjct: 22 PHEVSL-------ETIDSMPDEYRDTLIHQLLANGEGELSAGDTYIDSFYPLAPDADERY 74 Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT 175 + A EE H F ++ L +D KA + ++ S T Sbjct: 75 ICAQFAAEEVDHFRRFSRLLAELEVDTS--------HMLSQKKAE-----RRYFAAESMT 121 Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235 T + ++ + F F EG QI + ++ + AE + ++++E+ H Sbjct: 122 TDFRSWEE---RAAFSFLCELEG------HYQIKEMVSSSYLPLRAEA-EAVLKEEARHF 171 Query: 236 NFGIDVINQIKIE 248 + G ++ + + Sbjct: 172 SHGALLMRRAAKD 184 >gi|54401380|gb|AAV34474.1| predicted ribonucleotide reductase, beta subunit [uncultured proteobacterium RedeBAC7D11] Length = 382 Score = 36.1 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 64/202 (31%), Gaps = 31/202 (15%) Query: 68 WKSKNGLTDDERLMIK---RNLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFE 123 + N +++DE+ + G +V + + + + Y Q F+ Sbjct: 95 YPEYNDMSEDEKREVSWHASAWGLSQFLHGEQGALLVASQLVSCAPTYQAKLYAASQCFD 154 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA H F + + + Y PS+ A + L D Sbjct: 155 EARHVEVFNRYL------QDVMGMSYPISPSLKALLDKGL-----------------TDP 191 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + ++ EG+ A S + + + Y++RDE+ H+ FGI+ + Sbjct: 192 RWDLKFIAMQIIIEGL----ALAAFQSTKMSTSCPLLRDLTHYVIRDEARHVTFGINYLE 247 Query: 244 QIKIENPHLWTKEFQQKSRTML 265 ++ + + Sbjct: 248 DFNKTLSEDEIEDRARFAYEAC 269 >gi|242017167|ref|XP_002429063.1| phosphatidylinositol 4-kinase type-II, putative [Pediculus humanus corporis] gi|212513927|gb|EEB16325.1| phosphatidylinositol 4-kinase type-II, putative [Pediculus humanus corporis] Length = 464 Score = 36.1 bits (82), Expect = 7.7, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%) Query: 35 LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLAL 67 P K+ +W Y W+P ++P D+ Sbjct: 362 FPFKHPDSWRAYPYYWA--WLPQAKIPFSSDIRQ 393 >gi|310779320|ref|YP_003967653.1| Rubrerythrin [Ilyobacter polytropus DSM 2926] gi|309748643|gb|ADO83305.1| Rubrerythrin [Ilyobacter polytropus DSM 2926] Length = 183 Score = 36.1 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 12/150 (8%) Query: 57 TEVPMQDDLALWKSKNGLTD-----DERLMIKRNLGFFASSESLVANNIVL-AIYRHLSN 110 E+ D+ W +++ L + DE+ +I F+ + V + + + Sbjct: 31 EEIKETGDMI-WATEHILGEGLACGDEQ-IIGDLRAHFSGECTEVGMYLAMSRVADREGY 88 Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQ 167 PE + R AFEEA H+ F ++ + D E + E + + K + A + Q Sbjct: 89 PEVAEAYKRIAFEEAEHAAKFAELLGEVVTDSTEENLRRRVEAEYGATSGKFDIAKRAKQ 148 Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197 T + ++ + F + E Sbjct: 149 LGFDAIHDT-VHEMAKDEARHGKAFKGLLE 177 >gi|157361605|gb|ABV44760.1| microvilli-like protein [Phlebotomus papatasi] Length = 225 Score = 36.1 bits (82), Expect = 8.7, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 15/107 (14%) Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119 + DL + +I L + + + V +Y + + E ++ R Sbjct: 35 DLHQDLQDFADLIPTNQ----VIGIVLSYIIT-DREVQE-----LYGYARSDEFKKLYER 84 Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMY---REVPSITAKANWAL 163 EAVH ++ S L + N +P + + Sbjct: 85 AITSEAVHDLV--LLLESYNLPVIQTVNQIASLLSLPEYEPRNEDVI 129 >gi|222099571|ref|YP_002534139.1| Rubrerythrin [Thermotoga neapolitana DSM 4359] gi|221571960|gb|ACM22772.1| Rubrerythrin [Thermotoga neapolitana DSM 4359] Length = 156 Score = 36.1 bits (82), Expect = 8.9, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 9/108 (8%) Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156 + P+ +++ A +EA H+ TF+ I LG+DE ++ Sbjct: 18 GEEFYRKLAERFEKPDIKEFFSYMARQEAEHARTFESIGEELGVDE-------ETYLNLE 70 Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF--EGMWFY 202 + + + P T K + +++ F + E + FY Sbjct: 71 DAEEYLKSFVEGRFFPDAATMEKYLKERSVEEAIDFSISVEKETIIFY 118 >gi|82752473|ref|XP_727315.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23483100|gb|EAA18880.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 329 Score = 36.1 bits (82), Expect = 9.1, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 17/191 (8%) Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF--------EEAVHSHT 130 + K S +VA +L + + + ++ F E + Sbjct: 32 KKCFKIITSGLNSQCKMVALECLLNLSAQIPTELIERNIVEILFDMIKEEEKNEENYIDM 91 Query: 131 FQYIITSL---------GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181 + II+++ LD + +Y S++ N L + +PS D Sbjct: 92 YIMIISNITRCKEGIYKILDISDEGQIYHNTFSVSYYLNKLLFFYFQPITPSINKNMSDK 151 Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241 L + E M F+ A + L ++ + + + SLH + + Sbjct: 152 YMHISHILINISSIKESMPFFKNVAFLNKLSEQILILERCRTFLPFIMNLSLHKDIHDFI 211 Query: 242 INQIKIENPHL 252 P+L Sbjct: 212 FQSDCNMFPYL 222 >gi|328713560|ref|XP_003245116.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like [Acyrthosiphon pisum] Length = 62 Score = 35.8 bits (81), Expect = 9.4, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339 + +++ A+ + G +PF E+ + + NFFE R Sbjct: 8 KIHIEDFADGLLKESGFLQFTGRQTHPF---MELTSQQGKTNFFERR 51 >gi|297170317|gb|ADI21353.1| hypothetical protein [uncultured gamma proteobacterium HF0010_10D20] Length = 383 Score = 35.8 bits (81), Expect = 9.5, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 57/202 (28%), Gaps = 28/202 (13%) Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFE 123 L WK+ + E + +V + I + Y Q F+ Sbjct: 96 LDAWKNLSDEEKIEFDRHETAELLCQFLHGEQGALLVASQIASCAPTYNAKLYAASQTFD 155 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA H F + + ++ D+ Sbjct: 156 EARHVEVFNRYL-----------------------QEKIGFHYPVNANLKALLDKILTDE 192 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + V+ EG+ A +L V + + Y++RDE+ H+ FGI+ + Sbjct: 193 RWDLKFIGMQVIIEGL----ALAAFTNLKLDTNCVLLKQLLHYVIRDEARHVTFGINYLE 248 Query: 244 QIKIENPHLWTKEFQQKSRTML 265 + ++ Q + Sbjct: 249 EYIKTLSPEEVEDRAQFAYEAC 270 >gi|297170339|gb|ADI21374.1| hypothetical protein [uncultured gamma proteobacterium HF0010_20H22] Length = 382 Score = 35.8 bits (81), Expect = 9.7, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 31/202 (15%) Query: 68 WKSKNGLTDDERLMIK---RNLGFFASSESLVANNIVLA-IYRHLSNPECRQYLLRQAFE 123 + N ++D+E+ + G +V + + + + Y Q F+ Sbjct: 95 YPEYNDMSDEEKREVSWHASAWGLSQFLHGEQGALLVASQLVSCAPTYQAKLYAASQCFD 154 Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183 EA H F + + + Y PS+ A + L D Sbjct: 155 EARHVEVFNRYL------QDVMGMSYPISPSLKALLDKGL-----------------TDP 191 Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243 + ++ EG+ A S + + Y++RDE+ H+ FGI+ + Sbjct: 192 RWDLKFIAMQIIIEGL----ALAAFQSTKMTTSCPLLRDLTHYVIRDEARHVTFGINYLE 247 Query: 244 QIKIENPHLWTKEFQQKSRTML 265 ++ + + Sbjct: 248 DFNKTLSEDEIEDRARFAYEAC 269 >gi|118370720|ref|XP_001018560.1| conserved hypothetical protein [Tetrahymena thermophila] gi|89300327|gb|EAR98315.1| conserved hypothetical protein [Tetrahymena thermophila SB210] Length = 1319 Score = 35.8 bits (81), Expect = 9.7, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 60/199 (30%), Gaps = 6/199 (3%) Query: 112 ECRQYLLRQAF-EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170 E + L F A++ + + SL + + A + QTL Sbjct: 787 EATIFFLIIGFWLNAIYVQKLLFYLLSLFNPTKNRYGCKQAYEQFFADLLLVSKIFQTLQ 846 Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230 K L V + G +++ V ++ + + + Sbjct: 847 ICKKGVDFKHFSDFQLFSYIVNGINNAGFFYFFSLEHSYKTLYVQGWVAVSFISLFAILN 906 Query: 231 ESLHLNFGIDVINQIKIE--NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288 L + + I + K Q +++L + E Y E + + Sbjct: 907 VFYQLYNLKRIFDFIFKDIHKNQFPQKNNQSPDQSILRKTLNQEQLYGIENIQDEIIQQA 966 Query: 289 APSCEQYMQFIANRRCHQI 307 + Y++F+ N+R ++ Sbjct: 967 D---KNYLEFLKNQRLQKL 982 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.314 0.139 0.408 Lambda K H 0.267 0.0424 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,343,259,136 Number of Sequences: 14124377 Number of extensions: 253915020 Number of successful extensions: 659379 Number of sequences better than 10.0: 2942 Number of HSP's better than 10.0 without gapping: 4098 Number of HSP's successfully gapped in prelim test: 1374 Number of HSP's that attempted gapping in prelim test: 638818 Number of HSP's gapped (non-prelim): 5787 length of query: 352 length of database: 4,842,793,630 effective HSP length: 140 effective length of query: 212 effective length of database: 2,865,380,850 effective search space: 607460740200 effective search space used: 607460740200 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 82 (36.1 bits)