RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate
reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
         (352 letters)



>gnl|CDD|30557 COG0208, NrdF, Ribonucleotide reductase, beta subunit [Nucleotide
           transport and metabolism].
          Length = 348

 Score =  316 bits (810), Expect = 7e-87
 Identities = 117/335 (34%), Positives = 172/335 (51%), Gaps = 7/335 (2%)

Query: 14  EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
            K   +++ ++ N    +     P+KY WA E Y     N W+P E+ + +D+  WK   
Sbjct: 8   TKNDELEEPKIFNGNPTNAINWNPIKYPWALELYKKLTANFWLPEEIDLSNDIKDWKK-- 65

Query: 73  GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
            L+DDE+ +I R L F    +S+ ANN V A+   ++ PE    L  QAF EA+H+ ++ 
Sbjct: 66  -LSDDEKDLIIRVLAFLTLLDSIQANNGVPALSPLVTTPEEEAVLTNQAFMEAIHARSYS 124

Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
           YI  +LG  E E       V +       A    +            D  +EFL  L V 
Sbjct: 125 YIFDTLGPTEDEDEVFDDWVATNEILQEKAEIILRYYDDLGDDP--DDPLEEFLLKLVVA 182

Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
            V+ EG+ FY+GFA  L L R  KM G AE  + I+RDE+LHL F   +I ++  ENP L
Sbjct: 183 SVILEGILFYSGFAYPLYLARRGKMPGTAEIIRLIIRDEALHLYFIGYLIQRLVAENPEL 242

Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
           WT E + +   +  EA  LE  YA    P    GL     +QY+++ AN+R   +GLEPL
Sbjct: 243 WTAELKDEIYDLFKEAVELEKEYAEYLYPGIL-GLTEDLVKQYIRYNANKRLQNLGLEPL 301

Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
           +   ENP PW+   +   ++ +FFE RV+ YQ+G+
Sbjct: 302 YPAEENPIPWIELSLSADEKTDFFEGRVSSYQKGS 336


>gnl|CDD|153108 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit,
           ferritin-like diiron-binding domain.  Ribonucleotide
           Reductase, R2/beta subunit (RNRR2) is a member of a
           broad superfamily of ferritin-like diiron-carboxylate
           proteins. The RNR protein catalyzes the conversion of
           ribonucleotides to deoxyribonucleotides and is found in
           all eukaryotes, many prokaryotes, several viruses, and
           few archaea. The catalytically active form of RNR is a
           proposed alpha2-beta2 tetramer. The homodimeric alpha
           subunit (R1) contains the active site and redox active
           cysteines as well as the allosteric binding sites. The
           beta subunit (R2) contains a diiron cluster that, in its
           reduced state, reacts with dioxygen to form a stable
           tyrosyl radical and a diiron(III) cluster. This
           essential tyrosyl radical is proposed to generate a
           thiyl radical, located on a cysteine residue in the R1
           active site that initiates ribonucleotide reduction. The
           beta subunit is composed of 10-13 helices, the 8 longest
           helices form an alpha-helical bundle; some have 2
           addition beta strands. Yeast is unique in that it
           assembles both homodimers and heterodimers of RNRR2. The
           yeast heterodimer, Y2Y4, contains R2 (Y2) and a R2
           homolog (Y4) that lacks the diiron center and is
           proposed to only assist in cofactor assembly, and
           perhaps stabilize R1 (Y1) in its active conformation.
          Length = 288

 Score =  306 bits (787), Expect = 5e-84
 Identities = 118/300 (39%), Positives = 172/300 (57%), Gaps = 15/300 (5%)

Query: 32  NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
             L P+KY WAWE Y  A  N W P E+ +  DL  W+    LT+ ER  IKR L F A+
Sbjct: 1   FNLNPIKYPWAWELYKKAEANFWTPEEIDLSKDLKDWEK---LTEAERHFIKRVLAFLAA 57

Query: 92  SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMY 149
            +S+V  N+V    RH+  PE R +   QAF E +HS ++ YI+ +LG DE   ELF   
Sbjct: 58  LDSIVGENLVELFSRHVQIPEARAFYGFQAFMENIHSESYSYILDTLGKDEERDELFEAI 117

Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
              P++  KA+W L++   L   +         + F + L  F ++ EG++FY+GFA I 
Sbjct: 118 ETDPALKKKADWILRWYDNLDDNT--------KESFAERLVAFAIL-EGIFFYSGFAAIF 168

Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
            L R  KM G+AE  + I RDESLH +F   +I ++  ENP L+T+EF+++   ++ EA 
Sbjct: 169 WLARRGKMPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAV 228

Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID 328
            LE  +A + +P G +GLN    +QY++++ANRR   +GLE LF    +NPF WM  + D
Sbjct: 229 ELEKEFARDLLPDGILGLNKEDMKQYIEYVANRRLENLGLEKLFNVEDKNPFDWMELISD 288


>gnl|CDD|36780 KOG1567, KOG1567, KOG1567, Ribonucleotide reductase, beta subunit
           [Nucleotide transport and metabolism].
          Length = 344

 Score =  157 bits (398), Expect = 4e-39
 Identities = 103/328 (31%), Positives = 156/328 (47%), Gaps = 28/328 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           D+ +L        + P+KY   W+ Y  A  + W   EV +  DL  W+    L DDER 
Sbjct: 24  DEPLLMENPRRFVMFPIKYHDIWQMYKKAEASFWTAEEVDLSKDLDDWEK---LNDDERH 80

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I   L FFA+S+ +V  N+V    + +  PE R +   Q   E +HS  +  +I +   
Sbjct: 81  FISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIAIENIHSEMYSLLIDTYIR 140

Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D  E   LFN    +P +  KA+WAL++              D D  F + L  F  V E
Sbjct: 141 DPKEREFLFNAIETIPEVKKKADWALRWIS------------DKDSLFAERLVAFAAV-E 187

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F         +   HL  K  
Sbjct: 188 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC-------LLFSHLKKKPN 240

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
           +++   ++ EA  +E  +  E +P   +G+N     QY++F+A+R   ++G E  +   E
Sbjct: 241 EERIEEIITEAVEIEQEFLTEALPVNLIGMNCDLMSQYIEFVADRLLVELGNEKYYN-AE 299

Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
           NPF +M E I L  + NFFE RV+EYQ+
Sbjct: 300 NPFDFM-ENISLAGKTNFFEKRVSEYQK 326


>gnl|CDD|144013 pfam00268, Ribonuc_red_sm, Ribonucleotide reductase, small chain. 
          Length = 281

 Score =  140 bits (355), Expect = 5e-34
 Identities = 77/292 (26%), Positives = 123/292 (42%), Gaps = 26/292 (8%)

Query: 36  PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
           P+++   WE Y  A  N W+  EV +  D+  W+    L + ER        F A+++ +
Sbjct: 13  PIQHPDIWELYKKAEANRWLAEEVDLSKDIPDWEK---LNEAEREFYSFVFAFLAAADGI 69

Query: 96  VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREV 152
           V  N+   +       +   Y   Q   E VHS  +  I  +L  DE E    FN     
Sbjct: 70  VNENLAERLSAEFQQKDILHYYGEQIAIENVHSEVYSLIQLTLFNDEKERDAYFNAIETD 129

Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
           P+I  KA W L+                 D E L +  + + + EG++F + FA I  L 
Sbjct: 130 PAIQRKAQWLLR--------------WVRDAESLAEKLIAFALVEGIFFSSSFASIAYLR 175

Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
           +   M G  +  + I RDE+LH +    + N           K   ++   +  EA  +E
Sbjct: 176 KRGLMPGTCQSNELISRDEALHTDAACLLYNNYLGLE-----KPEPKRIYKLFREAVEIE 230

Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
           I +     P    G+N  + +QY++F A+R    IG +PLF    NPF  ++
Sbjct: 231 IEFIEAAAPVDVHGMNVRAIKQYIEFSADRLLVAIGYKPLFN-VPNPFFPLA 281


>gnl|CDD|153120 cd07911, RNRR2_Rv0233_like, Ribonucleotide Reductase R2-like
           protein, Mn/Fe-binding domain.  Rv0233 is a
           Mycobacterium tuberculosis ribonucleotide reductase R2
           protein with a  heterodinuclear
           manganese/iron-carboxylate cofactor located in its metal
           center. The Rv0233-like family may represent a
           structural/functional counterpart of the evolutionary
           ancestor of the RNRR2's (Ribonucleotide Reductase,
           R2/beta subunit) and the bacterial multicomponent
           monooxygenases.  RNRR2s belong to a broad superfamily of
           ferritin-like diiron-carboxylate proteins. The RNR
           protein catalyzes the conversion of ribonucleotides to
           deoxyribonucleotides and is found in prokaryotes and
           archaea. The catalytically active form of RNR is a
           proposed alpha2-beta2 tetramer. The homodimeric alpha
           subunit (R1) contains the active site and redox active
           cysteines as well as the allosteric binding sites.
          Length = 280

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 51/272 (18%), Positives = 96/272 (35%), Gaps = 41/272 (15%)

Query: 54  WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111
           W P ++    D   W     L+++ER +  R    F + E  V  ++  ++         
Sbjct: 22  WNPADIDFSQDREDW---EQLSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMAAEGRL 78

Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG----------ELFNMYREVPSITAKANW 161
           E   YL +  FEEA H+  F+  + ++G+ +           E F  Y  +P        
Sbjct: 79  EEEMYLTQFLFEEAKHTDFFRRWLDAVGVSDDLSDLHTAVYREPF--YEALPY------- 129

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG---FAQILSLGRANKMV 218
                  L           +    ++    + ++ EG+   TG   +  I    +   + 
Sbjct: 130 ---AELRLY-------LDASPAAQVRASVTYNMIVEGVLAETGYYAWRTICE--KRGILP 177

Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
           G+ E  + +  DES H+ +G     ++   +   W   F+++   ++  A  L I    E
Sbjct: 178 GMQEGIRRLGDDESRHIAWGTFTCRRLVAADDANWDV-FEERMNELVPHALGL-IDEIFE 235

Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
              +   GL+     QY      RR   I   
Sbjct: 236 LYDEMPFGLDPDELMQYAVDQFQRRLGYIERA 267


>gnl|CDD|176707 cd08359, Glo_EDI_BRP_like_22, This conserved domain belongs to a
           superfamily including the bleomycin resistance protein,
           glyoxalase I, and type I ring-cleaving dioxygenases.
           This protein family belongs to a conserved domain
           superfamily that is found in a variety of structurally
           related metalloproteins, including the bleomycin
           resistance protein, glyoxalase I, and type I
           ring-cleaving dioxygenases. A bound metal ion is
           required for protein activities for the members of this
           superfamily. A variety of metal ions have been found in
           the catalytic centers of these proteins including
           Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The
           structures of this family demonstrate  domain swapping,
           which is shared by glyoxalase I and antibiotic
           resistance proteins.
          Length = 119

 Score = 31.8 bits (73), Expect = 0.28
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 7/51 (13%)

Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
            P   T       +F    F F VVF+  W+       +SL   +  V +A
Sbjct: 4   YPVIVTDDLAETADFYVRHFGFTVVFDSDWY-------VSLRSPDGGVELA 47


>gnl|CDD|176781 cd08803, Death_ank3, Death domain of Ankyrin-3.  Death Domain (DD)
           of the human protein ankyrin-3 (ANK-3) and related
           proteins. Ankyrins are modular proteins comprising three
           conserved domains, an N-terminal membrane-binding domain
           containing ANK repeats, a spectrin-binding domain and a
           C-terminal DD. ANK-3, also called anykyrin-G (for
           general or giant), is found in neurons and at least one
           splice variant has been shown to be essential for
           propagation of action potentials as a binding partner to
           neurofascin and voltage-gated sodium channels. It is
           required for maintaining axo-dendritic polarity, and may
           be a genetic risk factor associated with bipolar
           disorder. ANK-3 may also play roles in other cell types.
           Mutations affecting ANK-3 pathways for Na channel
           localization are associated with Brugada syndrome, a
           potentially fata arrythmia. In general, DDs are
           protein-protein interaction domains found in a variety
           of domain architectures. Their common feature is that
           they form homodimers by self-association or heterodimers
           by associating with other members of the DD superfamily
           including CARD (Caspase activation and recruitment
           domain), DED (Death Effector Domain), and PYRIN. They
           serve as adaptors in signaling pathways and can recruit
           other proteins into signaling complexes.
          Length = 84

 Score = 29.6 bits (66), Expect = 1.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
           +M  +A+       + +  LNF +D INQI++ENP+    +
Sbjct: 6   RMAIVADHLGLSWTELARELNFSVDEINQIRVENPNSLIAQ 46


>gnl|CDD|39857 KOG4658, KOG4658, KOG4658, Apoptotic ATPase [Signal transduction
           mechanisms].
          Length = 889

 Score = 29.1 bits (65), Expect = 2.1
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 12/85 (14%)

Query: 47  LSACNNHWMPTEVPMQD---DLALWKSKNGLTDDERLMIKRNLGFFASSESL-------- 95
           L    +      V M D   ++ALW + +    +E  ++   +G     +          
Sbjct: 469 LIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRM 528

Query: 96  -VANNIVLAIYRHLSNPECRQYLLR 119
            + NN +  I     NP+ R  LL+
Sbjct: 529 SLMNNKIEHIAGSSENPKLRTLLLQ 553


>gnl|CDD|33462 COG3664, XynB, Beta-xylosidase [Carbohydrate transport and
           metabolism].
          Length = 428

 Score = 28.8 bits (64), Expect = 2.3
 Identities = 11/56 (19%), Positives = 26/56 (46%)

Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
            + +  ++    S+ L  G+L+N++ E+ +       +L Y Q  + P+ T+    
Sbjct: 347 PLKTGRYKDGSFSIDLTNGDLYNVWAEMGARYGPDKSSLDYLQEATQPAPTSEKIT 402


>gnl|CDD|176783 cd08805, Death_ank1, Death domain of Ankyrin-1.  Death Domain (DD)
           of the human protein ankyrin-1 (ANK-1) and related
           proteins. Ankyrins are modular proteins comprising three
           conserved domains, an N-terminal membrane-binding domain
           containing ANK repeats, a spectrin-binding domain and a
           C-terminal DD. ANK-1, also called ankyrin-R (for
           restricted), is found in brain, muscle, and erythrocytes
           and is thought to function in linking integral membrane
           proteins to the underlying cytoskeleton. It plays a
           critical nonredundant role in erythroid development and
           is associated with hereditary spherocytosis (HS), a
           common disorder of the red cell membrane. The small
           alternatively-spliced variant, sANK-1, found in striated
           muscle and concentrated in the sarcoplasmic reticulum
           (SR) binds obscurin and titin, which facilitates the
           anchoring of the network SR to the contractile
           apparatus. In general, DDs are protein-protein
           interaction domains found in a variety of domain
           architectures. Their common feature is that they form
           homodimers by self-association or heterodimers by
           associating with other members of the DD superfamily
           including CARD (Caspase activation and recruitment
           domain), DED (Death Effector Domain), and PYRIN. They
           serve as adaptors in signaling pathways and can recruit
           other proteins into signaling complexes.
          Length = 84

 Score = 28.4 bits (63), Expect = 3.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
           KM  I E       + +  L F ++ IN+I++ENP+
Sbjct: 6   KMAVIREHLGLSWAELARELQFSVEDINRIRVENPN 41


>gnl|CDD|176732 cd08317, Death_ank, Death domain associated with Ankyrins.  Death
           Domain (DD) associated with Ankyrins. Ankyrins are
           modular proteins comprising three conserved domains, an
           N-terminal membrane-binding domain containing ANK
           repeats, a spectrin-binding domain and a C-terminal DD.
           Ankyrins function as adaptor proteins and they interact,
           through ANK repeats, with structurally diverse membrane
           proteins, including ion channels/pumps, calcium release
           channels, and cell adhesion molecules. They play
           critical roles in the proper expression and membrane
           localization of these proteins. In mammals, this family
           includes ankyrin-R for restricted (or ANK1), ankyrin-B
           for broadly expressed (or ANK2) and ankyrin-G for
           general or giant (or ANK3). They are expressed in
           different combinations in many tissues and play
           non-overlapping functions. In general, DDs are
           protein-protein interaction domains found in a variety
           of domain architectures. Their common feature is that
           they form homodimers by self-association or heterodimers
           by associating with other members of the DD superfamily
           including CARD (Caspase activation and recruitment
           domain), DED (Death Effector Domain), and PYRIN. They
           serve as adaptors in signaling pathways and can recruit
           other proteins into signaling complexes.
          Length = 84

 Score = 28.0 bits (63), Expect = 3.6
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
            L      I+ IK ENP+       Q+++ ML 
Sbjct: 24  ELGVSETDIDLIKAENPN----SLAQQAQAMLK 52


>gnl|CDD|36427 KOG1213, KOG1213, KOG1213, Sister chromatid cohesion complex
           Cohesin, subunit RAD21/SCC1 [Cell cycle control, cell
           division, chromosome partitioning].
          Length = 614

 Score = 28.1 bits (62), Expect = 4.0
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 4/94 (4%)

Query: 8   SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
             I   +++++VD   +L+      QL                    MP E    + L  
Sbjct: 305 DSILRRKRKLSVDGVTLLSEEEFKEQLADFSDILTSLDLAPPTRVLMMPKETGRVEKLFS 364

Query: 68  WKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
               +   +      +     F S ESL   + V
Sbjct: 365 SPEPDLFANRLLFTGR----LFLSLESLKPEDSV 394


>gnl|CDD|40030 KOG4833, KOG4833, KOG4833, Uncharacterized conserved protein
           [Function unknown].
          Length = 573

 Score = 27.8 bits (61), Expect = 5.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           A  RH    E    ++ +AFE A+  + F+ +   L
Sbjct: 256 AEERHFLMDEDHSSVVHKAFEAAILLNFFEILQRLL 291


>gnl|CDD|36693 KOG1480, KOG1480, KOG1480, Netrin transmembrane receptor unc-5
           [Signal transduction mechanisms].
          Length = 909

 Score = 27.3 bits (60), Expect = 5.7
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 78  ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
           ++L + R L +FA+  S  A  ++L ++     P+     L  A EE         + + 
Sbjct: 842 QKLHLDRYLSYFATKPSPTA--VILDLWEARHQPDGDLSSLAAALEEMGRPDAVLSLASE 899

Query: 138 LGLDE 142
                
Sbjct: 900 GQCFP 904


>gnl|CDD|34330 COG4714, COG4714, Uncharacterized membrane-anchored protein
           conserved in bacteria [Function unknown].
          Length = 303

 Score = 26.9 bits (59), Expect = 9.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 280 MPKGFVGLNAPSCEQYMQFIANR 302
           +P G + + A    QYM+ I N 
Sbjct: 67  LPAGMIFIPAEEANQYMELIGNN 89


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0780    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,353,728
Number of extensions: 226991
Number of successful extensions: 487
Number of sequences better than 10.0: 1
Number of HSP's gapped: 470
Number of HSP's successfully gapped: 22
Length of query: 352
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 257
Effective length of database: 4,210,882
Effective search space: 1082196674
Effective search space used: 1082196674
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)