RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate
reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
         (352 letters)



>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia
           trachomatis [TaxId: 813]}
          Length = 317

 Score =  280 bits (717), Expect = 1e-76
 Identities = 172/315 (54%), Positives = 237/315 (75%), Gaps = 3/315 (0%)

Query: 10  IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
           +   +KRVN++ KR++N  + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM  D+ LW
Sbjct: 5   LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 64

Query: 69  KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
           KS + L++DER +I  NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 65  KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 123

Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
           HTF YI  SLGLDE E+FN Y E  +I AK ++ ++ T  +  P+F T + +  QEF+++
Sbjct: 124 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 183

Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
           L  +Y++ EG++FY+GF  ILS  R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 184 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 243

Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
           NP +WT E QQ+   ++  A  LEI YA + +P+G +GL A     Y+Q IA+RR  +IG
Sbjct: 244 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 303

Query: 309 LEPLFKYTENPFPWM 323
           L+P++  T+NPFPWM
Sbjct: 304 LKPIYH-TKNPFPWM 317


>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli
           [TaxId: 562]}
          Length = 339

 Score =  207 bits (528), Expect = 9e-55
 Identities = 70/317 (22%), Positives = 128/317 (40%), Gaps = 26/317 (8%)

Query: 31  VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
           V +    KY    +      +  W P EV +  D   +++   L + E+ +   NL +  
Sbjct: 25  VARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQT 81

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             +S+   +  +A+   +S PE   ++   AF E +HS ++ +II ++  D   +F+   
Sbjct: 82  LLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIV 141

Query: 151 EVPSITAKANWALQY-----------------TQTLSSPSFTTGTKDADQEFLQDLFVFY 193
               I  +A     Y                 T T++  + T   ++  ++    L    
Sbjct: 142 TNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSV- 200

Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
              E + FY  FA   +      M G A+  + I RDE+LHL     ++N ++       
Sbjct: 201 NALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPE 260

Query: 254 TK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIG 308
                 E +Q+   +  +A   E  +A      G  +GLN     QY+++I N R   +G
Sbjct: 261 MAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVG 320

Query: 309 LEPLFKYTENPFPWMSE 325
           L+  F+   NP PW++ 
Sbjct: 321 LDLPFQTRSNPIPWINT 337


>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
           (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
          Length = 334

 Score =  202 bits (515), Expect = 4e-53
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 26/306 (8%)

Query: 21  DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
           ++ +LN   +   L P+KY   W+ Y  A  + W   E+ +  D+  W ++  + ++ER 
Sbjct: 50  EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNR--MNENERF 107

Query: 81  MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
            I R L FFA+S+ +V  N+V      +  PE + +   Q   E +HS T+  +I +   
Sbjct: 108 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 167

Query: 141 DEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
           D      LFN    +P I  KA WAL++ Q                    +  V +   E
Sbjct: 168 DPKESEFLFNAIHTIPEIGEKAEWALRWIQD-------------ADALFGERLVAFASIE 214

Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
           G++F   FA I  L +   M G+    + I RDE LH +F   +   +K +      ++ 
Sbjct: 215 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEK- 273

Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
                 ++ EA  +E  Y  + +P   +G+NA    QY++F+A+R     G +  +K  E
Sbjct: 274 ------IVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VE 326

Query: 318 NPFPWM 323
           NPF +M
Sbjct: 327 NPFDFM 332


>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 281

 Score =  178 bits (453), Expect = 4e-46
 Identities = 78/305 (25%), Positives = 134/305 (43%), Gaps = 27/305 (8%)

Query: 19  VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
           V+D+ +L        + P++Y   W+ Y  A  + W   EV +  D+  W++   L  DE
Sbjct: 1   VEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPDE 57

Query: 79  RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
           R  I   L FFA+S+ +V  N+V    + +   E R +   Q   E +HS  +  +I + 
Sbjct: 58  RHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTY 117

Query: 139 GLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
             D      LFN    +P +  KA+WAL++                 +    +  V +  
Sbjct: 118 IKDPKEREYLFNAIETMPCVKKKADWALRWIGD-------------KEATYGERVVAFAA 164

Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
            EG++F   FA I  L +   M G+    + I RDE LH +F   +   +  +       
Sbjct: 165 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRV- 223

Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
                 R ++  A  +E  +  E +P   +G+N    +QY++F+A+R   ++G   +F+ 
Sbjct: 224 ------REIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFR- 276

Query: 316 TENPF 320
            ENPF
Sbjct: 277 VENPF 281


>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast
           (Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
          Length = 285

 Score =  176 bits (448), Expect = 2e-45
 Identities = 56/282 (19%), Positives = 110/282 (39%), Gaps = 25/282 (8%)

Query: 34  LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
           + P+KY   W  Y     + W   E+ +  D   ++    LTDD++  I   L    SS+
Sbjct: 27  MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSD 83

Query: 94  SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYRE 151
           +LV   ++      L NPE + +   Q   E ++S  +  ++ +   D     LF     
Sbjct: 84  NLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIAN 143

Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
           +P +  KA +  ++                D     +  V +   EG++    +A +  L
Sbjct: 144 LPEVKHKAAFIERWI-------------SNDDSLYAERLVAFAAKEGIFQAGNYASMFWL 190

Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
                M G+A   + I RD   + +F   +   ++ +      ++       ++ EA  +
Sbjct: 191 TDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEK-------IITEAVEI 243

Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
           E  Y   ++P    G++  S   Y++F+A+      G E  +
Sbjct: 244 EKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYY 285


>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 283

 Score =  173 bits (440), Expect = 2e-44
 Identities = 53/295 (17%), Positives = 107/295 (36%), Gaps = 28/295 (9%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           ++     E +    +N W+P +VP+ +D+  W++   L+  E+ +  R        +++ 
Sbjct: 9   IQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQ 65

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154
                 ++      P     L   +F EAVH+ ++  I ++L   +     +    E P 
Sbjct: 66  NIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPP 125

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  KA   L +                  +      +  V  E   FY+GF   +     
Sbjct: 126 LQRKAQIILAHY---------------VSDEPLKKKIASVFLESFLFYSGFWLPMYFSSR 170

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            K+   A+  + I+RDE++H  +          +   +  +E +  +  +L E    EI 
Sbjct: 171 GKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIR 230

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP--FPWMS 324
           Y      +          + ++ + AN+    +G E LF       NP     +S
Sbjct: 231 YTEALYAE---TGWVNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 282


>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2
           {Corynebacterium ammoniagenes [TaxId: 1697]}
          Length = 284

 Score =  172 bits (436), Expect = 4e-44
 Identities = 53/289 (18%), Positives = 107/289 (37%), Gaps = 24/289 (8%)

Query: 37  LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
           +      E +     N W+P ++P+ +D+  W     +T  E+L   R        +++ 
Sbjct: 11  IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQ 67

Query: 97  ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154
                +++                AF E+VH+ ++  I  +L       E F    E  +
Sbjct: 68  GTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENEN 127

Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
           +  KA   + Y                  +      V   + E   FY+GF   + L   
Sbjct: 128 LQRKAKIIMSYYN---------------GDDPLKKKVASTLLESFLFYSGFYLPMYLSSR 172

Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
            K+   A+  + I+RDES+H  +      Q   +      +E++  +  ++++    EI 
Sbjct: 173 AKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIE 232

Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PW 322
           Y  +      +G      ++++++ AN+  + +G E LF   E    P 
Sbjct: 233 YTEDIYDD--LGWTE-DVKRFLRYNANKALNNLGYEGLFPTDETKVSPA 278


>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase
           oxygenase subunit TouA {Pseudomonas stutzeri [TaxId:
           316]}
          Length = 491

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 42/221 (19%), Positives = 66/221 (29%), Gaps = 24/221 (10%)

Query: 42  AWEKYLSACNNHWMPTEVPMQDD---------LALWKSKNGLTDDERLM--IKRNLGFFA 90
           AWEKY         P  V +Q +          AL +       D   +  ++ + G  A
Sbjct: 42  AWEKY-DEPYKITYPEYVSIQREKDSGAYSIKAALERDGFVDRADPGWVSTMQLHFGAIA 100

Query: 91  SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
             E   A+     + R    P  R        +E  H     Y   +      +    ++
Sbjct: 101 LEE-YAASTAEARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDWAHK 159

Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
            +        WA    ++       T   D+    +   F F   F  M  + G A   +
Sbjct: 160 AIH----TNEWAAIAARSFFDDMMMTR--DSVAVSIMLTFAFETGFTNM-QFLGLAADAA 212

Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
              A      A     I  DES H   G   + +I +EN  
Sbjct: 213 --EAGDHT-FASLISSIQTDESRHAQQGGPSL-KILVENGK 249


>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit
           {Methylococcus capsulatus [TaxId: 414]}
          Length = 512

 Score = 28.7 bits (64), Expect = 0.73
 Identities = 32/220 (14%), Positives = 57/220 (25%), Gaps = 24/220 (10%)

Query: 54  WMPTEVPMQD----------DLALWKSKNGLTDDERLM--IKRNLGFFASSESLVANNIV 101
                  M+            +AL +   G+    +    +K    F    E   A    
Sbjct: 49  IAKEYARMEAVKDERQFGSLQVALTRLNAGVRVHPKWNETMKVVSNFLEVGE-YNAIAAT 107

Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
             ++      E +   L Q  +E  H+H   Y+      +  +           T     
Sbjct: 108 GMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDA--RRTRTIGP 165

Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
             +  + + S  F +G  DA +  L    V    F                 AN      
Sbjct: 166 LWKGMKRVFSDGFISG--DAVECSLNLQLVGEACFTNP-LIVAVT---EWAAANGDEITP 219

Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
             +  I  DE  H+  G   +  I  +       ++    
Sbjct: 220 TVFLSIETDELRHMANGYQTVVSIANDPAS---AKYLNTD 256


>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit,
           NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}
          Length = 150

 Score = 25.6 bits (55), Expect = 5.9
 Identities = 13/115 (11%), Positives = 27/115 (23%), Gaps = 10/115 (8%)

Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
           +F   W +     ++          +      + R     +   ++V         H   
Sbjct: 30  IFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEA 89

Query: 255 KEFQQK-----SRTMLHEATLLEIAYAHETMPKGF----VGLNA-PSCEQYMQFI 299
              +                L  + +  E          +GL   P  E +  FI
Sbjct: 90  GNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFI 144


>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
          Length = 967

 Score = 25.3 bits (55), Expect = 7.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 88  FFASSESLVANNIVLAIYRHLSN 110
           FFA  E ++   ++ A+Y  LSN
Sbjct: 613 FFAGGEDILILQLIRAVYDTLSN 635


>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231
           {Prochlorococcus marinus [TaxId: 1219]}
          Length = 222

 Score = 25.1 bits (55), Expect = 9.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)

Query: 227 IMRDESLHLNFG 238
           +++DE  HLN+G
Sbjct: 134 VVKDEYTHLNYG 145


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0511    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,325,204
Number of extensions: 60992
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 16
Length of query: 352
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,226,816
Effective search space: 326333056
Effective search space used: 326333056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)