Query gi|254780965|ref|YP_003065378.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 229
No_of_seqs 4 out of 6
Neff 2.0
Searched_HMMs 33803
Date Wed Jun 1 19:41:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780965.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3b42_A GSU0935, methyl-accept 28.1 34 0.001 15.6 2.0 35 170-204 42-84 (91)
2 >3i4a_A N(G),N(G)-dimethylargi 24.0 21 0.00063 16.9 0.3 63 40-109 25-89 (113)
3 >2dyi_A Probable 16S rRNA-proc 23.2 15 0.00045 17.8 -0.6 52 86-138 14-65 (75)
4 >1nh2_D Transcription initiati 22.7 12 0.00035 18.5 -1.3 22 37-58 2-23 (66)
5 >1xrs_B D-lysine 5,6-aminomuta 19.4 64 0.0019 13.9 4.4 50 74-135 44-93 (94)
6 >2con_A RUH-035 protein, NIN o 19.3 21 0.00062 16.9 -0.5 39 170-209 2-55 (79)
7 >3kvc_A Retinoid isomerohydrol 16.2 16 0.00048 17.6 -1.7 70 124-193 28-101 (113)
8 >2fsj_A Hypothetical protein T 16.2 26 0.00078 16.3 -0.6 29 101-129 26-54 (66)
9 >1nvp_D Transcription initiati 16.1 20 0.0006 17.0 -1.3 20 38-57 2-21 (56)
10 >1b4u_B LIGA, LIGB, protocatec 13.2 48 0.0014 14.7 -0.0 41 49-92 5-48 (54)
No 1
>>3b42_A GSU0935, methyl-accepting chemotaxis protein, putative; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 1.90A {Geobacter sulfurreducens} (A:45-135)
Probab=28.12 E-value=34 Score=15.55 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=24.5
Q ss_pred CCCCCEEEEEEEEECC-C--CCCCH-----HHHHHHEEEEECC
Q ss_conf 6877807899996227-7--53314-----4103110021078
Q gi|254780965|r 170 SHKDGLIELIFSYPLR-S--CHGCE-----DIGFMDIAYKFTT 204 (229)
Q Consensus 170 T~e~Ggqrl~F~yPLR-d--CHaC~-----d~G~a~iAyDFd~ 204 (229)
+-++|..-|-+..|+. . |+.|- ++|-++|.++.+.
T Consensus 42 ~~~~g~~~l~~~~Pi~ne~~C~~CH~~~~~VLGvl~v~~sl~~ 84 (91)
T 3b42_A 42 ETLDGKRTLSLVLPFPNEQRCQSCHDAGAAYLGGLLVTTSIEE 84 (91)
T ss_dssp EEETTEEEEEEEEEEECCGGGGGTSCTTCSEEEEEEEEEECC-
T ss_pred EECCCCEEEEEEEEECCCHHHHHHCCCCCEEEEEEEEEEEHHH
T ss_conf 9439955999998613852358636998805789999974368
No 2
>>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* (A:1-96,A:292-308)
Probab=24.04 E-value=21 Score=16.86 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=41.0
Q ss_pred EECCCHHHHHCCCCHHHCC--CCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 0127456763130021101--335789999997338888998799985105741377758641770258999
Q gi|254780965|r 40 VWKGDSETYFQCKRAHEFD--ENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQ 109 (229)
Q Consensus 40 vw~gd~~~~~q~~~a~~~d--~~~~~Cl~~~m~~tGat~eAl~aa~~L~~~~e~gYV~sf~E~g~vdvatV~ 109 (229)
.|-+....++|.++|-.|. +.+.+|+-+. ...+.++.-.|.+|-+ .||.+.+...+++|+++.
T Consensus 25 a~M~~~~~~~~FthAIVR~pp~Sl~~g~lt~--~d~g~vD~e~A~~QHe-----~YV~aLR~~lGleVieLP 89 (113)
T 3i4a_A 25 AGLGHPAAFGRATHAVVRALPESLGQHALRS--AKGEEVDVARAERQHQ-----LYVGVLGSKLGLQVVELP 89 (113)
T ss_dssp ------CCTTCCSEEEEECCCTTHHHHSCCS--SCCCCCCHHHHHHHHH-----HHHHHHHTTTCCEEEEEC
T ss_pred CCCCCCCCCCCCEEEEECCCCHHHHHHHHHC--CCCCCCCHHHHHHHHH-----HHHHHHHHHCCCEEEEEC
T ss_conf 2678865347600799925997787555412--4679989999999999-----999999871698899928
No 3
>>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, structural genomics, NPPSFA; 2.00A {Thermus thermophilus HB8} PDB: 2dog_A (A:88-162)
Probab=23.21 E-value=15 Score=17.78 Aligned_cols=52 Identities=10% Similarity=0.099 Sum_probs=40.1
Q ss_pred HCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEECCCCCEECHHHHHH
Q ss_conf 10574137775864177025899975533888603897527762116435127
Q gi|254780965|r 86 EKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSV 138 (229)
Q Consensus 86 ~~~~e~gYV~sf~E~g~vdvatV~YPyRANeN~gT~Lvpt~gssiIdv~d~~l 138 (229)
+.+-+.|-|..-.+.|.-++.+|+.+-.+.....+.|+|...+. ||.++-.+
T Consensus 14 deg~~iG~V~~V~~~ga~dvl~I~~~~~~~~~~k~~lIP~vV~~-Vd~~~~~i 65 (75)
T 2dyi_A 14 VEGRQVGEVVDILDAGAQDVLIIRGVGERLRDRAERLVPLQAPY-VRVEEGSI 65 (75)
T ss_dssp ETTEEEEEEEEEEEETTEEEEEEEECCSSGGGSTTEEEETTCTT-EEECSSCE
T ss_pred CCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEECCCCE-EECCCCEE
T ss_conf 24444458989711599509999758755779968995454888-95669999
No 4
>>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} (D:56-121)
Probab=22.74 E-value=12 Score=18.46 Aligned_cols=22 Identities=32% Similarity=0.438 Sum_probs=18.0
Q ss_pred EEEEECCCHHHHHCCCCHHHCC
Q ss_conf 1000127456763130021101
Q gi|254780965|r 37 EKAVWKGDSETYFQCKRAHEFD 58 (229)
Q Consensus 37 e~~vw~gd~~~~~q~~~a~~~d 58 (229)
.++..||+|.|||-|.|--||=
T Consensus 2 sKltfKG~L~TYRFCDnVWTFi 23 (66)
T 1nh2_D 2 SKLTVKGNLDTYGFCDDVWTFI 23 (66)
T ss_dssp CEEEEEEEEEEEEEETTEEEEE
T ss_pred CCEEEEEEECCCCCCCCEEEEE
T ss_conf 3247988513110137579999
No 5
>>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} (B:1-94)
Probab=19.35 E-value=64 Score=13.87 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEECCCCCEECHHH
Q ss_conf 88899879998510574137775864177025899975533888603897527762116435
Q gi|254780965|r 74 GTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDIND 135 (229)
Q Consensus 74 at~eAl~aa~~L~~~~e~gYV~sf~E~g~vdvatV~YPyRANeN~gT~Lvpt~gssiIdv~d 135 (229)
...+|-.||.+|-+ +||+-+ ++|.+.-......||++|-...++.||.++
T Consensus 44 ~~~~AeeAA~~la~-----------KMGle~-p~Vv~~~~l~~~~t~fVvyG~v~~~Vd~~~ 93 (94)
T 1xrs_B 44 NNERSAEAAKQIAL-----------KMGLEE-PSVVMQQSLDEEFTFFVVYGNFVQSVNYNE 93 (94)
T ss_dssp SSHHHHHHHHHHHH-----------TTSSCC-CEEEEEEEEETTEEEEEEEEC---------
T ss_pred CHHHHHHHHHHHHH-----------HCCCCC-CHHHHHHHHHHCCCEEEEEEEEEEEEEHHH
T ss_conf 72889999999999-----------738855-314898754223606899886206861666
No 6
>>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=19.29 E-value=21 Score=16.87 Aligned_cols=39 Identities=28% Similarity=0.528 Sum_probs=23.6
Q ss_pred CCCCCEEEEEEEEECCCCCCCHHH------------H---HHHEEEEECCCCCEE
Q ss_conf 687780789999622775331441------------0---311002107877510
Q gi|254780965|r 170 SHKDGLIELIFSYPLRSCHGCEDI------------G---FMDIAYKFTTKGAFI 209 (229)
Q Consensus 170 T~e~Ggqrl~F~yPLRdCHaC~d~------------G---~a~iAyDFd~dGnFI 209 (229)
|+.+=.|+-+=+|.|| ||||-.+ | -.++|.-.|.||++.
T Consensus 2 s~~G~~Ik~~r~~iLr-C~aCf~~t~~~~k~FCp~CGn~TL~rv~vsvd~~G~~~ 55 (79)
T 2con_A 2 SSGSSGVREARSYILR-CHGCFKTTSDMNRVFCGHCGNKTLKKVSVTINDDGTLH 55 (79)
T ss_dssp CCCCCCCCCCCCEEEE-CSSSCCEESCSSCCSCSSSCCSCCEEEECBCCSSCCCB
T ss_pred CCCCCHHHHHHHHHEE-EEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEE
T ss_conf 8754224777541226-42335586887666274369881058999989998599
No 7
>>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A (A:121-233)
Probab=16.17 E-value=16 Score=17.58 Aligned_cols=70 Identities=6% Similarity=-0.169 Sum_probs=43.8
Q ss_pred ECCCCCEECHHHHHHHHHHCCCHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEE--EECCC-CCCCHHH
Q ss_conf 52776211643512767630384379-99960888411267631234687780789999--62277-5331441
Q gi|254780965|r 124 PTVGSHIIDINDSSVHQLYDSSPIAK-DFVLRNPGVFPYSAGHFVKSSHKDGLIELIFS--YPLRS-CHGCEDI 193 (229)
Q Consensus 124 pt~gssiIdv~d~~la~~~~aDPty~-~fikanP~i~P~gag~sav~T~e~Ggqrl~F~--yPLRd-CHaC~d~ 193 (229)
.++.+.+||++.+.--...+=++... ....|||.+-|.|+-..-+-....+....+.. .|-.. .|+|..-
T Consensus 28 E~g~p~~lDp~TLeT~G~~~~~~~l~~~~~tAHpk~dptG~~~~~~~~~~~~~~~~~~v~~~~~~~~~HdfaiT 101 (113)
T 3kvc_A 28 ETNFITKVNPETLETIKQVDLCNYVSVNGATAHPHIENDGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPIS 101 (113)
T ss_dssp SSSEEEEECTTTCCEEEEEEHHHHSSCSCCCSCCEECTTSCEEEEEEECC---CCEEEEEEECCCCTTCCCGGG
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCEEEEECCCC
T ss_conf 58987687452113456445567747777666741899997784110027665421011026750575204667
No 8
>>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural protein; 1.90A {Thermoplasma acidophilum dsm 1728} (A:186-226,A:295-319)
Probab=16.17 E-value=26 Score=16.26 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=23.0
Q ss_pred CCCCEEEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 77025899975533888603897527762
Q gi|254780965|r 101 ALIGIVEVQYPYRANENSGTLLIPTVGSH 129 (229)
Q Consensus 101 g~vdvatV~YPyRANeN~gT~Lvpt~gss 129 (229)
+.--+++.+|+..++-+.+|-|+|-+|-|
T Consensus 26 ~mepiie~sfs~q~gidrvtslipvgggs 54 (66)
T 2fsj_A 26 DMEPVVELSFSLQIGVDRVTSLIPVGGGS 54 (66)
T ss_dssp TTEECGGGCEEESCCHGGEEEEEEESTTH
T ss_pred CCEEEEEEECCCCHHHHHCCEEEEECCHH
T ss_conf 82599776167436897689899989279
No 9
>>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} (D:53-108)
Probab=16.08 E-value=20 Score=16.98 Aligned_cols=20 Identities=25% Similarity=0.597 Sum_probs=16.0
Q ss_pred EEEECCCHHHHHCCCCHHHC
Q ss_conf 00012745676313002110
Q gi|254780965|r 38 KAVWKGDSETYFQCKRAHEF 57 (229)
Q Consensus 38 ~~vw~gd~~~~~q~~~a~~~ 57 (229)
++-.||.|+|||-|.|--||
T Consensus 2 k~tfKG~L~TYRfCDnVWTF 21 (56)
T 1nvp_D 2 RVNFRGSLNTYRFCDNVWTF 21 (56)
T ss_dssp EEEEEEEEEEEEEETTEEEE
T ss_pred CEEEEEEECEEEEECCEEEE
T ss_conf 15899974301344658999
No 10
>>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Pseudomonas paucimobilis} (B:193-246)
Probab=13.23 E-value=48 Score=14.68 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=24.7
Q ss_pred HCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHH---HHHHHHCCCCHH
Q ss_conf 31300211013357899999973388889987---999851057413
Q gi|254780965|r 49 FQCKRAHEFDENFDNCIITSIKKTGGTQEALR---AAQYLEKYLEPG 92 (229)
Q Consensus 49 ~q~~~a~~~d~~~~~Cl~~~m~~tGat~eAl~---aa~~L~~~~e~g 92 (229)
-||+||---...||+-..+.+-. .||+|+ .++|+..+|-+|
T Consensus 5 l~GeRAGfiN~ewD~~flD~l~~---dPe~l~~~~~~ey~~~~GseG 48 (54)
T 1b4u_B 5 LQGPRAGLINKEFDLNFIDKLIS---DPEELSKMPHIQYLRESGSEG 48 (54)
T ss_dssp CSSTTTTBCCHHHHHHHHHHHHH---CHHHHTTCCHHHHHHHHCTTG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHC---CHHHHHHCCCHHHHHHCCCCH
T ss_conf 99877888998999999999845---957665168899999705343
Done!