RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780965|ref|YP_003065378.1| hypothetical protein
CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62]
         (229 letters)



>gnl|CDD|30435 COG0086, RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD
           subunit [Transcription].
          Length = 808

 Score = 30.2 bits (68), Expect = 0.53
 Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 155 NPGVFPYSAGHFVKSSHKDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTTKG 206
              V    A    +SS  +GL E  +        G    G +D A K    G
Sbjct: 703 EVTVKHLEAEGPGESSFLEGLTENEYFG---HPIGGRT-GLVDTALKTADSG 750


>gnl|CDD|147383 pfam05170, AsmA, AsmA family.  The AsmA gene, whose product is
          involved in the assembly of outer membrane proteins in
          Escherichia coli. AsmA mutations were isolated as
          extragenic suppressors of an OmpF assembly mutant. AsmA
          may have a role in LPS biogenesis.
          Length = 537

 Score = 27.8 bits (62), Expect = 2.5
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 1  MKY--KIAIIILLVLVGVILAFYF 22
          MK   KI +IIL+VL+ +I+A   
Sbjct: 1  MKKALKILLIILIVLLLLIIALIA 24


>gnl|CDD|35669 KOG0448, KOG0448, KOG0448, Mitofusin 1 GTPase, involved in
           mitochondrila biogenesis [Posttranslational
           modification, protein turnover, chaperones].
          Length = 749

 Score = 26.5 bits (58), Expect = 5.8
 Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 53  RAHEFD--ENFDNCIITSIKKTGGTQEALRAAQYLEK 87
           R  EF   E F+ CI  S  KT   Q   RA QYL K
Sbjct: 335 RFIEFQDFEKFEECISQSALKTKFEQHLHRAKQYLSK 371


>gnl|CDD|146406 pfam03748, FliL, Flagellar basal body-associated protein FliL.
          This FliL protein controls the rotational direction of
          the flagella during chemotaxis. FliL is a cytoplasmic
          membrane protein associated with the basal body.
          Length = 145

 Score = 26.0 bits (58), Expect = 9.3
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 1  MKYKIAIIILLVLVGVIL--AFYFQQSSTP 28
           K  I +I+ L+L+       FYF     P
Sbjct: 1  KKKLILLILGLLLLAAGGGGGFYFLLKGGP 30


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.324    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,891,596
Number of extensions: 150615
Number of successful extensions: 415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 414
Number of HSP's successfully gapped: 9
Length of query: 229
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 138
Effective length of database: 4,297,318
Effective search space: 593029884
Effective search space used: 593029884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.5 bits)