RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780965|ref|YP_003065378.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62] (229 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 41.9 bits (98), Expect = 1e-04 Identities = 36/237 (15%), Positives = 66/237 (27%), Gaps = 112/237 (47%) Query: 17 ILAFYF-------QQSSTPQNHLLFFSEK-------AVW--KGDSETYFQCKRAHEFDEN 60 ++ Y + N LF + A++ +G+++ YF+ E + Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-----ELRDL 176 Query: 61 FD--NCIITSIKKTGGT--QEALRAAQYLEKY----------LE-----PG--YVSSYRK 99 + + ++ + K E +R EK LE P Y+ S Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS--- 233 Query: 100 EA-----LIGIVE-VQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVL 153 LIG+++ Y V + ++ Sbjct: 234 -IPISCPLIGVIQLAHY--------------VVTAKLLGF-------------------- 258 Query: 154 RNPGVF-PY---SAGH------------------FVKSSHKDGLIELIFSYPLRSCH 188 PG Y + GH F S K I ++F +R C+ Sbjct: 259 -TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK--AITVLFFIGVR-CY 311 >3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B Length = 407 Score = 28.4 bits (62), Expect = 1.3 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%) Query: 1 MKYKIAIIILLVLVGVILA---FYFQQSSTP 28 MK KIA+II ++ G I++ F + + P Sbjct: 1 MK-KIALIIGSMIAGGIISAAGFTWVAKAEP 30 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 28.0 bits (61), Expect = 1.9 Identities = 7/16 (43%), Positives = 12/16 (75%), Gaps = 4/16 (25%) Query: 136 SSVHQLY--DSSP-IA 148 +S+ +LY DS+P +A Sbjct: 27 ASL-KLYADDSAPALA 41 >1n7v_A Adsorption protein P2; bacteriophage PRD1, viral receptor-binding, beta-propeller, proline-rich, antibiotic-resistance, viral protein; 2.20A {Enterobacteria phage PRD1} SCOP: b.126.1.1 PDB: 1n7u_A Length = 555 Score = 27.7 bits (61), Expect = 2.3 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 26/100 (26%) Query: 128 SHIIDINDSSV-HQLYDSSPIA--------KDFVLRNPGVFPYSAGHFVKSSHKDGLIEL 178 S ++ + D+SV LY S P++ ++V N G+FP S G K L+E+ Sbjct: 377 SALVQLQDNSVLDVLYYSLPLSLGGSKAAIDEWVANNCGLFPMSGG-----LDKTTLLEI 431 Query: 179 IFSYPLRSCH--------GCEDIGFMDIAYKFTTKGAFIG 210 P R G D+ +D + + + +FIG Sbjct: 432 ----PRRQLEAINPQDGPGQYDLFILDDSGAYASFSSFIG 467 >1ihp_A Phytase; phosphomonoesterase, hydrolase, glycoprotein, signal; 2.50A {Aspergillus ficuum} SCOP: c.60.1.2 Length = 438 Score = 26.6 bits (58), Expect = 4.9 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 10/51 (19%) Query: 134 NDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPL 184 +D+S + DSSP FP ++ + SH +G+I ++F+ L Sbjct: 305 DDTSSNHTLDSSP----------ATFPLNSTLYADFSHDNGIISILFALGL 345 >3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain 1, antiport, calcium transport, calmodulin-binding, cell membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A* 2fws_A Length = 160 Score = 26.3 bits (57), Expect = 5.8 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 112 YRANENSGTLLIPTVGSHIIDINDSSVH-QLYDSSPIAKDFVLRNPGVFPYSAGHFVKS 169 Y+ EN GT+ + + N V + D + A G + G K Sbjct: 32 YQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGETQKE 90 >1v04_A Serum paraoxonase/arylesterase 1; hydrolase, directed evolution, antioxidant, israel structural proteomics center, ISPC, structural genomics; 2.2A {Homo sapiens} SCOP: b.68.6.2 Length = 355 Score = 26.2 bits (57), Expect = 6.6 Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 6 AIIILLVLVGVILAFYFQQSSTPQNHLLFFSE 37 A + L L+G+ LA + +Q S+ Q E Sbjct: 2 AKLTALTLLGMGLALFDRQKSSFQTRFNVHRE 33 >1gxy_A T-cell ECTO-ADP-ribosyltransferase 2; immuno-regulation; 1.71A {Rattus norvegicus} SCOP: d.166.1.3 PDB: 1gxz_A* 1gy0_A 1og1_A* 1og4_A* 1og3_A* Length = 226 Score = 26.2 bits (57), Expect = 7.2 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 12/57 (21%) Query: 110 YPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHF 166 YP N+ GT L+ GS +D N + ++F NPG F Y A H+ Sbjct: 63 YPKGFNDFHGTALVAYTGSIAVDFNRA-----------VREFK-ENPGQFHYKAFHY 107 >2w2g_A Non-structural protein 3; thiol protease, RNA replication, viral replicase, RNA-binding, zinc-finger, metal-binding, transmembrane; 2.22A {Sars coronavirus} PDB: 2wct_A 2jwi_A 2jwj_A 2jzf_A 2rnk_A 2jzd_A 2jze_A Length = 264 Score = 25.8 bits (56), Expect = 8.4 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Query: 64 CIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIG 104 C++ KK GGT E L ++ L+K Y+++Y + G Sbjct: 68 CVVIPSKKAGGTTEML--SRALKKVPVDEYITTYPGQGCAG 106 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.324 0.140 0.423 Gapped Lambda K H 0.267 0.0424 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,038,739 Number of extensions: 92168 Number of successful extensions: 255 Number of sequences better than 10.0: 1 Number of HSP's gapped: 255 Number of HSP's successfully gapped: 11 Length of query: 229 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 140 Effective length of database: 3,535,514 Effective search space: 494971960 Effective search space used: 494971960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 55 (25.7 bits)