RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780965|ref|YP_003065378.1| hypothetical protein
CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62]
         (229 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 36/237 (15%), Positives = 66/237 (27%), Gaps = 112/237 (47%)

Query: 17  ILAFYF-------QQSSTPQNHLLFFSEK-------AVW--KGDSETYFQCKRAHEFDEN 60
           ++  Y        +      N  LF +         A++  +G+++ YF+     E  + 
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-----ELRDL 176

Query: 61  FD--NCIITSIKKTGGT--QEALRAAQYLEKY----------LE-----PG--YVSSYRK 99
           +   + ++  + K       E +R     EK           LE     P   Y+ S   
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS--- 233

Query: 100 EA-----LIGIVE-VQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVL 153
                  LIG+++   Y               V + ++                      
Sbjct: 234 -IPISCPLIGVIQLAHY--------------VVTAKLLGF-------------------- 258

Query: 154 RNPGVF-PY---SAGH------------------FVKSSHKDGLIELIFSYPLRSCH 188
             PG    Y   + GH                  F  S  K   I ++F   +R C+
Sbjct: 259 -TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK--AITVLFFIGVR-CY 311


>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta
          barrel, copper, copper transport, ION transport,
          transport, transport protein; 3.40A {Escherichia coli
          k-12} PDB: 3h94_A 3h9t_B
          Length = 407

 Score = 28.4 bits (62), Expect = 1.3
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)

Query: 1  MKYKIAIIILLVLVGVILA---FYFQQSSTP 28
          MK KIA+II  ++ G I++   F +   + P
Sbjct: 1  MK-KIALIIGSMIAGGIISAAGFTWVAKAEP 30


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.0 bits (61), Expect = 1.9
 Identities = 7/16 (43%), Positives = 12/16 (75%), Gaps = 4/16 (25%)

Query: 136 SSVHQLY--DSSP-IA 148
           +S+ +LY  DS+P +A
Sbjct: 27  ASL-KLYADDSAPALA 41


>1n7v_A Adsorption protein P2; bacteriophage PRD1, viral receptor-binding,
           beta-propeller, proline-rich, antibiotic-resistance,
           viral protein; 2.20A {Enterobacteria phage PRD1} SCOP:
           b.126.1.1 PDB: 1n7u_A
          Length = 555

 Score = 27.7 bits (61), Expect = 2.3
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 26/100 (26%)

Query: 128 SHIIDINDSSV-HQLYDSSPIA--------KDFVLRNPGVFPYSAGHFVKSSHKDGLIEL 178
           S ++ + D+SV   LY S P++         ++V  N G+FP S G       K  L+E+
Sbjct: 377 SALVQLQDNSVLDVLYYSLPLSLGGSKAAIDEWVANNCGLFPMSGG-----LDKTTLLEI 431

Query: 179 IFSYPLRSCH--------GCEDIGFMDIAYKFTTKGAFIG 210
               P R           G  D+  +D +  + +  +FIG
Sbjct: 432 ----PRRQLEAINPQDGPGQYDLFILDDSGAYASFSSFIG 467


>1ihp_A Phytase; phosphomonoesterase, hydrolase, glycoprotein, signal;
           2.50A {Aspergillus ficuum} SCOP: c.60.1.2
          Length = 438

 Score = 26.6 bits (58), Expect = 4.9
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 10/51 (19%)

Query: 134 NDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPL 184
           +D+S +   DSSP            FP ++  +   SH +G+I ++F+  L
Sbjct: 305 DDTSSNHTLDSSP----------ATFPLNSTLYADFSHDNGIISILFALGL 345


>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain
           1, antiport, calcium transport, calmodulin-binding, cell
           membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A*
           2fws_A
          Length = 160

 Score = 26.3 bits (57), Expect = 5.8
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 112 YRANENSGTLLIPTVGSHIIDINDSSVH-QLYDSSPIAKDFVLRNPGVFPYSAGHFVKS 169
           Y+  EN GT+ +  +       N   V  +  D +  A        G   +  G   K 
Sbjct: 32  YQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGETQKE 90


>1v04_A Serum paraoxonase/arylesterase 1; hydrolase, directed evolution,
          antioxidant, israel structural proteomics center, ISPC,
          structural genomics; 2.2A {Homo sapiens} SCOP: b.68.6.2
          Length = 355

 Score = 26.2 bits (57), Expect = 6.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 6  AIIILLVLVGVILAFYFQQSSTPQNHLLFFSE 37
          A +  L L+G+ LA + +Q S+ Q       E
Sbjct: 2  AKLTALTLLGMGLALFDRQKSSFQTRFNVHRE 33


>1gxy_A T-cell ECTO-ADP-ribosyltransferase 2; immuno-regulation; 1.71A
           {Rattus norvegicus} SCOP: d.166.1.3 PDB: 1gxz_A* 1gy0_A
           1og1_A* 1og4_A* 1og3_A*
          Length = 226

 Score = 26.2 bits (57), Expect = 7.2
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 12/57 (21%)

Query: 110 YPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHF 166
           YP   N+  GT L+   GS  +D N +            ++F   NPG F Y A H+
Sbjct: 63  YPKGFNDFHGTALVAYTGSIAVDFNRA-----------VREFK-ENPGQFHYKAFHY 107


>2w2g_A Non-structural protein 3; thiol protease, RNA replication, viral
           replicase, RNA-binding, zinc-finger, metal-binding,
           transmembrane; 2.22A {Sars coronavirus} PDB: 2wct_A
           2jwi_A 2jwj_A 2jzf_A 2rnk_A 2jzd_A 2jze_A
          Length = 264

 Score = 25.8 bits (56), Expect = 8.4
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 64  CIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIG 104
           C++   KK GGT E L  ++ L+K     Y+++Y  +   G
Sbjct: 68  CVVIPSKKAGGTTEML--SRALKKVPVDEYITTYPGQGCAG 106


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.324    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0424    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,038,739
Number of extensions: 92168
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 11
Length of query: 229
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 140
Effective length of database: 3,535,514
Effective search space: 494971960
Effective search space used: 494971960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.7 bits)