Query gi|254780966|ref|YP_003065379.1| hypothetical protein CLIBASIA_04335 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 53
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 19:33:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780966.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2j3t_D Trafficking protein pa 24.2 34 0.001 16.9 1.3 17 33-49 53-69 (77)
2 >2f5g_A Transposase, putative; 13.1 52 0.0015 16.0 0.1 15 7-21 61-75 (100)
3 >2fyx_A Transposase, putative; 9.8 77 0.0023 15.1 0.1 15 7-21 61-75 (121)
4 >2vjv_A Transposase ORFA; DNA- 9.8 73 0.0022 15.2 0.0 15 7-21 61-75 (139)
5 >1mpz_A Obtustatin; disintegri 8.1 73 0.0022 15.2 -0.6 13 7-19 22-34 (41)
6 >1qh4_A Creatine kinase; cance 6.8 2.2E+02 0.0065 12.7 1.4 16 19-34 79-94 (110)
7 >2r4f_A 3-hydroxy-3-methylglut 6.6 67 0.002 15.4 -1.3 23 28-50 9-31 (105)
8 >3gh1_A Predicted nucleotide-b 6.3 85 0.0025 14.9 -0.9 28 21-48 37-64 (82)
9 >3huf_A DNA repair and telomer 6.0 2.4E+02 0.007 12.5 1.2 20 29-50 84-103 (104)
10 >1j5s_A Uronate isomerase; TM0 5.9 2.2E+02 0.0065 12.7 1.0 13 35-47 10-22 (72)
No 1
>>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport, alternative splicing, golgi apparatus; HET: P1L; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A (D:26-102)
Probab=24.20 E-value=34 Score=16.91 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=13.6
Q ss_pred HHCCHHHHHCCHHCCCC
Q ss_conf 75269998500305865
Q gi|254780966|r 33 ECLDFKEIVEDKENFPS 49 (53)
Q Consensus 33 ecldfkeivedkenfps 49 (53)
.--|..|..++++|||-
T Consensus 53 dG~dv~e~l~~~~NyPl 69 (77)
T 2j3t_D 53 DGKEVLEYLGNPANYPV 69 (77)
T ss_dssp TSSBHHHHTTCGGGCSE
T ss_pred CCCCCCCCCCCCCCCCC
T ss_conf 76442223566666766
No 2
>>2f5g_A Transposase, putative; dimer, stem-loop binding, gene regulation; 1.70A {Sulfolobus solfataricus} (A:13-112)
Probab=13.05 E-value=52 Score=15.98 Aligned_cols=15 Identities=47% Similarity=0.616 Sum_probs=12.0
Q ss_pred HHHHHHHHHCCCCHH
Q ss_conf 532256550642046
Q gi|254780966|r 7 KSRTMHYLKGKSSRK 21 (53)
Q Consensus 7 ksrtmhylkgkssrk 21 (53)
-|..|.++||.|||.
T Consensus 61 is~~v~~lKg~SS~~ 75 (100)
T 2f5g_A 61 PSYLANYFKGKSARL 75 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHH
T ss_conf 899822004322678
No 3
>>2fyx_A Transposase, putative; 6457846, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 1.90A {Deinococcus radiodurans R1} (A:23-143)
Probab=9.77 E-value=77 Score=15.07 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=11.8
Q ss_pred HHHHHHHHHCCCCHH
Q ss_conf 532256550642046
Q gi|254780966|r 7 KSRTMHYLKGKSSRK 21 (53)
Q Consensus 7 ksrtmhylkgkssrk 21 (53)
-|..+.++||.|||.
T Consensus 61 is~~i~~lKg~Ssr~ 75 (121)
T 2fyx_A 61 IPDFVKALKGASARR 75 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHH
T ss_conf 189999870237889
No 4
>>2vjv_A Transposase ORFA; DNA-binding protein, protein-DNA complex, HUH motif, DNA stem loop, transposition; 1.90A {Helicobacter pylori} (A:21-159)
Probab=9.75 E-value=73 Score=15.19 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=12.1
Q ss_pred HHHHHHHHHCCCCHH
Q ss_conf 532256550642046
Q gi|254780966|r 7 KSRTMHYLKGKSSRK 21 (53)
Q Consensus 7 ksrtmhylkgkssrk 21 (53)
-|.-|.++||.|||.
T Consensus 61 is~ii~~lKg~Ssr~ 75 (139)
T 2vjv_A 61 VMKFIKTAKGRSSRI 75 (139)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHH
T ss_conf 455515103520799
No 5
>>1mpz_A Obtustatin; disintegrin, hydrolase; NMR {Macrovipera lebetina obtusa} (A:)
Probab=8.07 E-value=73 Score=15.21 Aligned_cols=13 Identities=54% Similarity=0.659 Sum_probs=10.7
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 5322565506420
Q gi|254780966|r 7 KSRTMHYLKGKSS 19 (53)
Q Consensus 7 ksrtmhylkgkss 19 (53)
.|++-||-.|||-
T Consensus 22 ts~tshyctgksc 34 (41)
T 1mpz_A 22 TSLTSHYCTGKSC 34 (41)
T ss_dssp CSSSCCSSCSSSC
T ss_pred CCCCCCCCCCCCC
T ss_conf 5688756279686
No 6
>>1qh4_A Creatine kinase; cancer, cellular energy metabolism, guanidino kinase, neurodegenerative disorders, transferase; 1.41A {Gallus gallus} (A:1-110)
Probab=6.75 E-value=2.2e+02 Score=12.73 Aligned_cols=16 Identities=38% Similarity=0.671 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 0468899998889975
Q gi|254780966|r 19 SRKECFLAIFNPLIEC 34 (53)
Q Consensus 19 srkecflaifnpliec 34 (53)
.--+-|..+|+|+|+-
T Consensus 79 esY~vF~~lFdpVI~d 94 (110)
T 1qh4_A 79 ESYEVFKELFDPVIED 94 (110)
T ss_dssp THHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8999999998999999
No 7
>>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... (A:154-258)
Probab=6.59 E-value=67 Score=15.41 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=14.7
Q ss_pred HHHHHHHCCHHHHHCCHHCCCCC
Q ss_conf 88899752699985003058651
Q gi|254780966|r 28 FNPLIECLDFKEIVEDKENFPSL 50 (53)
Q Consensus 28 fnpliecldfkeivedkenfpsl 50 (53)
|.-+.+...|+.-+++.|||..+
T Consensus 9 f~s~~~A~~f~~wi~~~e~~~~i 31 (105)
T 2r4f_A 9 LPRACDSAEVKAWLETSEGFAVI 31 (105)
T ss_dssp CSSHHHHHHHHHHHHSHHHHHHH
T ss_pred ECCHHHHHHHHHHHHCHHHHHHH
T ss_conf 48768899999987463568999
No 8
>>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A (A:1-82)
Probab=6.34 E-value=85 Score=14.85 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHCCHHHHHCCHHCCC
Q ss_conf 6889999888997526999850030586
Q gi|254780966|r 21 KECFLAIFNPLIECLDFKEIVEDKENFP 48 (53)
Q Consensus 21 kecflaifnpliecldfkeivedkenfp 48 (53)
+.|-||+.|.-..-=|-+++.|.-.+|-
T Consensus 37 R~CsLAVLNsGs~tDd~~~lle~y~dFd 64 (82)
T 3gh1_A 37 RNCSLAVLNSGSHTDNSKELLDKYKNFD 64 (82)
T ss_dssp HHHHHHHHCC---CCSSSCTTTTTTTCE
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHCCCCC
T ss_conf 7416764137898878899998668975
No 9
>>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosphoserine binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* (A:116-219)
Probab=6.01 E-value=2.4e+02 Score=12.55 Aligned_cols=20 Identities=40% Similarity=0.926 Sum_probs=15.6
Q ss_pred HHHHHHCCHHHHHCCHHCCCCC
Q ss_conf 8899752699985003058651
Q gi|254780966|r 29 NPLIECLDFKEIVEDKENFPSL 50 (53)
Q Consensus 29 npliecldfkeivedkenfpsl 50 (53)
....|| ||.|+.....|||-
T Consensus 84 pdalec--fkniiknndqfpss 103 (104)
T 3huf_A 84 PDALEC--FKNIIKNNDQFPSS 103 (104)
T ss_dssp HHHHHH--HHHHHTTCTTCCSC
T ss_pred CCHHHC--CCCCCCCCCCCCCC
T ss_conf 765650--89766665457654
No 10
>>1j5s_A Uronate isomerase; TM0064, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.85A {Thermotoga maritima} (A:36-56,A:146-196)
Probab=5.87 E-value=2.2e+02 Score=12.72 Aligned_cols=13 Identities=54% Similarity=0.672 Sum_probs=0.0
Q ss_pred CCHHHHHCCHHCC
Q ss_conf 2699985003058
Q gi|254780966|r 35 LDFKEIVEDKENF 47 (53)
Q Consensus 35 ldfkeivedkenf 47 (53)
||-|.|||.|.-|
T Consensus 10 ~~~~~~~~~~~~f 22 (72)
T 1j5s_A 10 LDAKDIVENKPWM 22 (72)
T ss_dssp CCHHHHHHTCCCC
T ss_pred CCHHHHCCCCCCC
T ss_conf 7967742067995
Done!