Query gi|254780966|ref|YP_003065379.1| hypothetical protein CLIBASIA_04335 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 53
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:50:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780966.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fyxa1 d.58.57.1 (A:1-130) Pu 9.0 35 0.0026 14.8 0.1 15 7-21 71-85 (130)
2 d2f5ga1 d.58.57.1 (A:2-131) Pu 8.7 37 0.0027 14.7 0.1 16 7-22 72-87 (130)
3 d2vjva1 d.58.57.1 (A:6-130) IS 6.5 54 0.0039 13.8 0.1 15 7-21 72-86 (125)
4 d2axtk1 f.23.36.1 (K:10-46) Ph 4.9 77 0.0056 13.1 0.1 12 25-36 6-17 (37)
5 d1tqga_ a.24.10.3 (A:) Chemota 4.5 75 0.0054 13.1 -0.1 13 8-20 42-54 (105)
6 d1emsa2 d.160.1.1 (A:10-280) N 4.4 1.3E+02 0.0092 11.9 1.0 21 33-53 251-271 (271)
7 d1vbka1 c.26.2.6 (A:176-307) H 4.2 84 0.0061 12.8 -0.1 19 25-44 109-127 (132)
8 d1x4ka2 g.39.1.3 (A:8-34) Four 3.8 44 0.0032 14.3 -1.8 17 7-24 11-27 (27)
9 d1qk1a1 a.83.1.1 (A:1-102) Cre 3.8 1.4E+02 0.01 11.7 1.9 18 16-33 72-89 (102)
10 d1m15a1 a.83.1.1 (A:2-95) Argi 3.7 1.5E+02 0.011 11.6 1.9 18 16-33 69-86 (94)
No 1
>d2fyxa1 d.58.57.1 (A:1-130) Putative transposase DR0177 {Deinococcus radiodurans [TaxId: 1299]}
Probab=9.00 E-value=35 Score=14.82 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=12.0
Q ss_pred HHHHHHHHHCCCCHH
Q ss_conf 532256550642046
Q gi|254780966|r 7 KSRTMHYLKGKSSRK 21 (53)
Q Consensus 7 ksrtmhylkgkssrk 21 (53)
-|.-|..|||.|||.
T Consensus 71 vs~~v~~lKg~Ssr~ 85 (130)
T d2fyxa1 71 IPDFVKALKGASARR 85 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHH
T ss_conf 688863633536888
No 2
>d2f5ga1 d.58.57.1 (A:2-131) Putative transposase SSO1474 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=8.74 E-value=37 Score=14.73 Aligned_cols=16 Identities=44% Similarity=0.522 Sum_probs=12.5
Q ss_pred HHHHHHHHHCCCCHHH
Q ss_conf 5322565506420468
Q gi|254780966|r 7 KSRTMHYLKGKSSRKE 22 (53)
Q Consensus 7 ksrtmhylkgkssrke 22 (53)
-|..|..+||.|||.-
T Consensus 72 is~~v~~lKg~SSr~i 87 (130)
T d2f5ga1 72 PSYLANYFKGKSARLI 87 (130)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHH
T ss_conf 8998435303127999
No 3
>d2vjva1 d.58.57.1 (A:6-130) ISHP608 transposase {Helicobacter pylori [TaxId: 210]}
Probab=6.48 E-value=54 Score=13.85 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=11.8
Q ss_pred HHHHHHHHHCCCCHH
Q ss_conf 532256550642046
Q gi|254780966|r 7 KSRTMHYLKGKSSRK 21 (53)
Q Consensus 7 ksrtmhylkgkssrk 21 (53)
-|.-|..|||.|||.
T Consensus 72 is~~v~~lKg~Ssr~ 86 (125)
T d2vjva1 72 VMKFIKTAKGRSSRI 86 (125)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHCHHCCCCHHH
T ss_conf 667634103621688
No 4
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.87 E-value=77 Score=13.05 Aligned_cols=12 Identities=50% Similarity=1.007 Sum_probs=8.2
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999888997526
Q gi|254780966|r 25 LAIFNPLIECLD 36 (53)
Q Consensus 25 laifnpliecld 36 (53)
.++|+|++..+-
T Consensus 6 y~~f~PivdvlP 17 (37)
T d2axtk1 6 YAIFDPLVDVLP 17 (37)
T ss_dssp GGGCHHHHHHGG
T ss_pred HHHHCHHHHHHC
T ss_conf 642120887722
No 5
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=4.54 E-value=75 Score=13.12 Aligned_cols=13 Identities=38% Similarity=0.593 Sum_probs=9.8
Q ss_pred HHHHHHHHCCCCH
Q ss_conf 3225655064204
Q gi|254780966|r 8 SRTMHYLKGKSSR 20 (53)
Q Consensus 8 srtmhylkgkssr 20 (53)
.|.+|-|||-+.-
T Consensus 42 ~R~~HTLKG~a~~ 54 (105)
T d1tqga_ 42 FRALHTLKGMAGT 54 (105)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHH
T ss_conf 9999987474131
No 6
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=4.44 E-value=1.3e+02 Score=11.94 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=13.1
Q ss_pred HHCCHHHHHCCHHCCCCCCCC
Q ss_conf 752699985003058651009
Q gi|254780966|r 33 ECLDFKEIVEDKENFPSLTIR 53 (53)
Q Consensus 33 ecldfkeivedkenfpsltir 53 (53)
.-+|+++|.+-+.++|++.-|
T Consensus 251 adiDl~~i~~~R~~~~~~~~r 271 (271)
T d1emsa2 251 AEIDLSYVDTLREMQPVFSHR 271 (271)
T ss_dssp EEEEHHHHHHHHHHSCGGGSC
T ss_pred EEECHHHHHHHHHHCCCCCCC
T ss_conf 997189999999848731039
No 7
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.20 E-value=84 Score=12.85 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=12.6
Q ss_pred HHHHHHHHHHCCHHHHHCCH
Q ss_conf 99988899752699985003
Q gi|254780966|r 25 LAIFNPLIECLDFKEIVEDK 44 (53)
Q Consensus 25 laifnpliecldfkeivedk 44 (53)
+.||.||| ++|=.||++-.
T Consensus 109 ~pIlRPLi-~~DK~EIi~~A 127 (132)
T d1vbka1 109 VPVYYPLI-ALPEEYIKSVK 127 (132)
T ss_dssp SCEECHHH-HSCHHHHHHHH
T ss_pred CCCCCCCC-CCCHHHHHHHH
T ss_conf 62102867-89999999999
No 8
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.85 E-value=44 Score=14.33 Aligned_cols=17 Identities=47% Similarity=0.915 Sum_probs=9.8
Q ss_pred HHHHHHHHHCCCCHHHHH
Q ss_conf 532256550642046889
Q gi|254780966|r 7 KSRTMHYLKGKSSRKECF 24 (53)
Q Consensus 7 ksrtmhylkgkssrkecf 24 (53)
-||.|.| ||.|-...||
T Consensus 11 GsrKme~-kG~~WHEtCF 27 (27)
T d1x4ka2 11 GTRKMEY-KGSSWHETCF 27 (27)
T ss_dssp SSCEEEE-TTEEEETTTT
T ss_pred CCEEECC-CCCCCCCCCC
T ss_conf 8502002-4772331329
No 9
>d1qk1a1 a.83.1.1 (A:1-102) Creatine kinase, N-domain {Human (Homo sapiens), mitochondria [TaxId: 9606]}
Probab=3.83 E-value=1.4e+02 Score=11.67 Aligned_cols=18 Identities=33% Similarity=0.767 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 642046889999888997
Q gi|254780966|r 16 GKSSRKECFLAIFNPLIE 33 (53)
Q Consensus 16 gkssrkecflaifnplie 33 (53)
|...--+.|-.+|+|+|+
T Consensus 72 gD~esY~vF~~lFdpvI~ 89 (102)
T d1qk1a1 72 GDEETYEVFADLFDPVIQ 89 (102)
T ss_dssp SSTTHHHHTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 877999999999989999
No 10
>d1m15a1 a.83.1.1 (A:2-95) Arginine kinase, N-domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Probab=3.67 E-value=1.5e+02 Score=11.59 Aligned_cols=18 Identities=22% Similarity=0.552 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 642046889999888997
Q gi|254780966|r 16 GKSSRKECFLAIFNPLIE 33 (53)
Q Consensus 16 gkssrkecflaifnplie 33 (53)
|...--+-|-.+|+|+|+
T Consensus 69 gD~esY~vF~~lFdpvI~ 86 (94)
T d1m15a1 69 PDAESYRTFGPLFDPIID 86 (94)
T ss_dssp SSSTHHHHTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 878999999999879999
Done!