RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780966|ref|YP_003065379.1| hypothetical protein
CLIBASIA_04335 [Candidatus Liberibacter asiaticus str. psy62]
         (53 letters)



>gnl|CDD|130111 TIGR01039, atpD, ATP synthase, F1 beta subunit.  The sequences of
           ATP synthase F1 alpha and beta subunits are related and
           both contain a nucleotide-binding site for ATP and ADP.
           They have a common amino terminal domain but vary at the
           C-terminus. The beta chain has catalytic activity, while
           the alpha chain is a regulatory subunit. Proton
           translocating ATP synthase, F1 beta subunit is
           homologous to proton translocating ATP synthase
           archaeal/vacuolar(V1), A subunit.
          Length = 461

 Score = 25.1 bits (55), Expect = 3.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 27  IFNPLIECLDFKEIVEDKENFP 48
           IFN L E +D K  +  KE +P
Sbjct: 88  IFNVLGEPIDEKGPIPAKERWP 109


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.328    0.143    0.431 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 826,172
Number of extensions: 33767
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 4
Length of query: 53
Length of database: 5,994,473
Length adjustment: 26
Effective length of query: 27
Effective length of database: 5,432,665
Effective search space: 146681955
Effective search space used: 146681955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.1 bits)