HHsearch alignment for GI: 254780967 and conserved domain: TIGR00898

>TIGR00898 2A0119 cation transport protein; InterPro: IPR004749 Organic cation transport proteins belong to this group. The protein from human is a sodium-dependent, high affinity carnitine transporter that also transports organic cations without the involvement of sodium. It is involved in the active cellular uptake of carnitine.; GO: 0015075 ion transmembrane transporter activity, 0006811 ion transport, 0016021 integral to membrane.
Probab=98.55  E-value=7.2e-07  Score=54.38  Aligned_cols=116  Identities=12%  Similarity=0.095  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             58899886576778899999850015651246887788899999999873257776403799899899999999999999
Q gi|254780967|r  245 PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFS  324 (398)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (398)
T Consensus       143 ~L~~s~~~~G~L~Gs~~~G~lsDrfGRk~~L~~s~l~~~~~g~~~a-------~SP~~~~~~vfR~L~G~~~~g~~~~~~  215 (557)
T TIGR00898       143 DLTQSLFFVGVLLGSLVLGYLSDRFGRKKVLLLSTLVTAVSGVLTA-------FSPNYTVFLVFRLLVGMGIAGIWVVAV  215 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf             6889999999998688887786352048999999999988786512-------756899999999996131002025777


Q ss_pred             HHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99985346-6769999999-99999999999999999983117999
Q gi|254780967|r  325 SISMEPFS-HLAGTASSIF-GFINTVISTILGIIIGQSFNGTTYPI  368 (398)
Q Consensus       325 ~~~~~~~~-~~~G~a~~l~-~~~~~~~~~~~~~~~g~~~~~~~~~~  368 (398)
T Consensus       216 ~L~~E~~~~~~R~~~~-~lG~~~~~~~G~~~L~l~AY~~~~SgWR~  260 (557)
T TIGR00898       216 VLNTEFLPKKQRAIVG-ILGIQVFFSLGLLLLPLVAYFIPDSGWRW  260 (557)
T ss_pred             EEEEEECCCCCCEEEE-EEHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             7677532736615766-10358888876999877886537855899