HHsearch alignment for GI: 254780967 and conserved domain: cd06174
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=100.00 E-value=1.1e-38 Score=229.75 Aligned_cols=328 Identities=20% Similarity=0.366 Sum_probs=254.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999886576699999999998199988999999999999999999999999865082899999999999999985
Q gi|254780967|r 6 VIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM 85 (398)
Q Consensus 6 ~l~~~~~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~ 85 (398)
T Consensus 3 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~i~~~~~g~l~D~~grk~~~~~~~~~~~i~~i~~ 81 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAG-LIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999793999999-99999999999999999999998096999999999999999999
Q ss_pred HCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 10011011100223210011111110001233210001111221223310001111111111222211111101456788
Q gi|254780967|r 86 VTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMG 165 (398)
Q Consensus 86 ~~a~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~ 165 (398)
T Consensus 82 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~i~~~l~-~~~~~~~~~~~~~ 160 (352)
T cd06174 82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA-ESLGWRWLFLILA 160 (352)
T ss_pred HHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHH
T ss_conf 976329999999999862210010799999860489999999999989887567899999999999-8644899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC-CCH
Q ss_conf 8887777888761678864022101111112333100000000025677788763100146888765455431531-101
Q gi|254780967|r 166 VITTFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLG-NLF 244 (398)
Q Consensus 166 ~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 244 (398)
T Consensus 161 ~~~~~~~i~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (352)
T cd06174 161 ILGLLLALLLLFLL---------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA 213 (352)
T ss_pred HHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999999999---------------------------999999999999999999999999999998248987777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58899886576778899999850015651246887788899999999873257776403799899899999999999999
Q gi|254780967|r 245 PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFS 324 (398)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (398)
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~ 287 (352)
T cd06174 214 GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLL--LAALGLLLLALAP----SLALLLVALLLLGFGLGFAFPALL 287 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7888999999999999999999982738999999999--9999999999886----599999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99985346-676999999999999999999999999983117999
Q gi|254780967|r 325 SISMEPFS-HLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPI 368 (398)
Q Consensus 325 ~~~~~~~~-~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 368 (398)
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~g~i~~~~g~~~ 332 (352)
T cd06174 288 TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGG 332 (352)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 999998796079999999999999999999999999999878999