HHsearch alignment for GI: 254780967 and conserved domain: pfam03209
>pfam03209 PUCC PUCC protein. This protein is required for high-level transcription of the PUC operon.
Probab=99.81 E-value=2.4e-17 Score=112.10 Aligned_cols=352 Identities=14% Similarity=0.091 Sum_probs=192.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHH-HHHHHHHHHHHHHHHHCC-----CC------
Q ss_conf 999819998899999999999999999999999986508-----2899-999999999999985100-----11------
Q gi|254780967|r 28 ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFG-----RKIV-MMFGLVIHIISTFIMVTI-----NS------ 90 (398)
Q Consensus 28 i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~G-----rr~~-l~~g~~~~~i~~~~~~~a-----~~------ 90 (398)
T Consensus 6 MIvEL~~pA~lv~-~lval~~lv-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~a~~a~~~l~~~~~~~~~ 83 (402)
T pfam03209 6 MIVELAVPASLVG-IMIALPLLV-APFRALIGFRSDTHRSALGWKRTPYIWLGTLLQAGGLAIMPFALIVLSGQGEAVGA 83 (402)
T ss_pred HHHHHCHHHHHHH-HHHHHHHHH-HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 7997122789999-999999999-99999975452577666878862678998999999999999999998567422333
Q ss_pred -HH----HHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHH-
Q ss_conf -01----110022321001111111000123321000111122122331000111111111122221111110145678-
Q gi|254780967|r 91 -FT----GMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCM- 164 (398)
Q Consensus 91 -~~----~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~- 164 (398)
T Consensus 84 ~~~~g~~~a~laF~l~Glgv~a~~T~~lALlad~t~e~~R~~~v~i~w~Mli~G~ivtA~i~g~lL~~fs~~rLi~v~~~ 163 (402)
T pfam03209 84 PTWAGLILAALAFLLVGLGVHMSQTVGLALATDLADEEDRPKVVGLMYVMLLVGIIVSAITVGWLLADFSPARLIQVIQG 163 (402)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 15999999999999996566275578999998538865669999999999999999999999997564699999999999
Q ss_pred -HHHHHHHHHHHHHHCCCCCCHHHH--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
Q ss_conf -888877778887616788640221--01111112333100000000025677788763100146888765455431531
Q gi|254780967|r 165 -GVITTFITLWYYIRFPETLDPRDV--RPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLG 241 (398)
Q Consensus 165 -~~~~~~~~~~~~~~~pet~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (398)
T Consensus 164 ~a~i~~~l~~~A~wg~-E~r~~~~~~~~~~~~~~f~~a~~~~~~~p~ar~F~~fv~l~~la~~mQD~iLEPygg~VFGms 242 (402)
T pfam03209 164 VALATMVLNVIALWKQ-EARRPSRPREEPRPEPSFLEAWLLFVAEPQARRFLFFLGLGTLAFFMQDVLLEPYGGEVFGLT 242 (402)
T ss_pred HHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC
T ss_conf 9999999999998356-667755456777789659999999983987300277999999999842012476402560778
Q ss_pred C-CHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1-01588998865767788999998-500156512468877888999999998732577764037998998999999999
Q gi|254780967|r 242 N-LFPIAFAVGGFAMSIASFINSRL-VEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLI 319 (398)
Q Consensus 242 ~-~~~~~~~~~~~~~~~~~~~~~~l-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
T Consensus 243 v~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~~li~a~~~----~~~~~l~~~v~l~G~g~G~f 318 (402)
T pfam03209 243 VGETTKLTAFFAGGTLVGFGLAGRVLSRGLDPFRMAGWGCAVGLPAFLALIFSALL----GNVALFVAGTLLIGFGAGLF 318 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHCCHHH
T ss_conf 65769999999889999999999998657775889999999999999999998743----65138999999999702188
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998534-6676999999999999999999999999983-------117999999999999999999999
Q gi|254780967|r 320 NSNFSSISMEPF-SHLAGTASSIFGFINTVISTILGIIIGQSFN-------GTTYPITIGFFGIAVSSFICILIV 386 (398)
Q Consensus 320 ~~~~~~~~~~~~-~~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 386 (398)
T Consensus 319 ~v~al~~mM~la~~~~aG~~mG~WGaaQA~A~Glg~~~Gg~~~Dl~~~l~~~~~~aY~~VF~lEa~l~~~a~~ll 393 (402)
T pfam03209 319 GHATLTAMMDLAPEERAGTALGAWGAAQATAAGLAILLGGVLRDLVRALAGNPATAYGLVFALEALLLIITIFVL 393 (402)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998168876415898797999999979999999999999998616975278999999999999999997