RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780967|ref|YP_003065380.1| probable multidrug resistance
transporter protein [Candidatus Liberibacter asiaticus str. psy62]
(398 letters)
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 168 bits (429), Expect = 2e-42
Identities = 97/387 (25%), Positives = 191/387 (49%), Gaps = 17/387 (4%)
Query: 9 MLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRK 68
MLM L ID+ LP LP I+ +S + Q +S Y++G+ I Q+FYGP++D FGRK
Sbjct: 1 MLM---PLAIDMYLPALPVIAADFGVSAGSV-QMTLSAYILGFAIGQLFYGPMADSFGRK 56
Query: 69 IVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKV 128
V++ G ++ ++ + ++ MR + G+ AA ++ +++RD++ + +++
Sbjct: 57 PVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRM 116
Query: 129 LSIAMMIFMIMPILAPSIGQATVALSGGWIGIF---VCMGVITTFITLWYYIRFPETLDP 185
+S ++ I P+LAP IG + + W IF ++ + + PETL
Sbjct: 117 MSFVTLVMTIAPLLAPIIGGW-LLVWFSWHAIFWVLALAAILAAALVFF---FIPETLPK 172
Query: 186 RDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLG-NLF 244
+P +L + +F+ +F+H+ Y +A+ + + F+ + +Y+ + + F
Sbjct: 173 ERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNF 232
Query: 245 PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWL-LVQITSNHPIHLL 303
FA+ + + + INSR V + G + + L I F I G WL + + L+
Sbjct: 233 GYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQF-IMGIWLVVSALLDLGFWALV 291
Query: 304 IFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNG 363
+ +A F +I+SN ++ ++ F H+AGTASS+ G + I I+G ++ +
Sbjct: 292 VGVAAFV---GCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSLAPFT 348
Query: 364 TTYPITIGFFGIAVSSFICILIVEKNQ 390
+ +P+ ++ S + L + +
Sbjct: 349 SAWPMVWSMAFCSILSILFYLYASRPK 375
>gnl|CDD|162006 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 166 bits (423), Expect = 7e-42
Identities = 99/380 (26%), Positives = 191/380 (50%), Gaps = 7/380 (1%)
Query: 3 FVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLS 62
F +++ L + LGID+ LP P+I+ L Q ++ YL+G+ Q+ +GPLS
Sbjct: 6 FALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIV-QMTLTLYLLGFAAGQLLWGPLS 64
Query: 63 DRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDG 122
DR+GR+ V++ GL I +S+ + N+ +L +R +Q G +A +I+ +++RDIY G
Sbjct: 65 DRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPG 124
Query: 123 RDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPET 182
+++++ SI M + + P +AP +G + + W IF + + ++ + PET
Sbjct: 125 EELSRIYSILMPVLALAPAVAPLLG-GYILVWLSWHAIFAFLSLAGILLSALIFFILPET 183
Query: 183 LDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGN 242
L ++ Y +F L+ K + Y + + G F + + +Y+ I +
Sbjct: 184 LPYEARIQISTYF--ETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSP 241
Query: 243 L-FPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIH 301
F + FA+ AM F+N R ++K+G + + L++F ++ L +
Sbjct: 242 SVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFA-VSAVLLEITAILGLGSW 300
Query: 302 LLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSF 361
+I F+ +I+S + ++E F H+AGTAS++FG + V+ I+G ++
Sbjct: 301 AMIIGPMMFVG-IGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLIH 359
Query: 362 NGTTYPITIGFFGIAVSSFI 381
T +P+++ +AV S +
Sbjct: 360 GNTAWPMSLSCLVLAVVSVL 379
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
Length = 394
Score = 114 bits (287), Expect = 6e-26
Identities = 93/356 (26%), Positives = 170/356 (47%), Gaps = 39/356 (10%)
Query: 3 FVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLS 62
+ ++ +L+A+ + I +P + ++ L++ E Q +++ YL+ YG++Q+FYGPLS
Sbjct: 9 LLFMLVLLVAVGQMAQTIYVPAIADMARDLNVR-EGAVQAVMAAYLLTYGLSQLFYGPLS 67
Query: 63 DRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDG 122
DR GR+ V++ G+ I I+ T + + +S T ++ IQG+G ++ ++ RD+Y+G
Sbjct: 68 DRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG 127
Query: 123 RDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPET 182
+ S+ M ++ P+LAP IG L GW ++ + ++ +T PET
Sbjct: 128 TQLRHANSLLNMGILVSPLLAPLIGGLLTTLF-GWRACYLFLLLLGAGVTFSMARWMPET 186
Query: 183 LDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGN 242
P D R + L S+ + +R Y + T+ I F S + + L +
Sbjct: 187 R-PADARRTRV---LASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSS 242
Query: 243 -----LF----PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLL------IFFMITG 287
LF P AF FA R ++F + S++ + I G
Sbjct: 243 MTVSILFILPIPAAFFGAWFA--------GRPNKRF--STLMWQSVICCLLAGLLMWIPG 292
Query: 288 SWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFG 343
+ ++ + + LL+ A FF + G++ +S +MEPF +LAGTA ++ G
Sbjct: 293 WFGVMNVWT-----LLVPAALFFFGA---GMLFPLATSGAMEPFPYLAGTAGALLG 340
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 89.3 bits (222), Expect = 2e-18
Identities = 97/350 (27%), Positives = 148/350 (42%), Gaps = 55/350 (15%)
Query: 16 LGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGL 75
GID+ L LP+I+ L+ S E S YL G A +F G ++DR GRK V + G
Sbjct: 17 AGIDMYLVGLPRIAADLNAS-EAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGA 75
Query: 76 VIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMI 135
+ II++ + + + L R +QGIG ++ +I+RD D R AKVLS+ I
Sbjct: 76 ALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGI 135
Query: 136 FMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETLDPRDVRPLNLYA 195
I+P+LAP +G + L W +F M + + L ET R +
Sbjct: 136 TCIIPVLAPVLGH-LIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAASSK-P 193
Query: 196 ILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIAFAVGGFAM 255
+S SL+ + S L + +L++ IL FVN+S + + Q+G F+ G +A+
Sbjct: 194 RENSESLLNRFFLSRL--VITTLSVTVILTFVNTSPVLLME--QMG------FSRGEYAI 243
Query: 256 SIA---------SFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFI 306
+A SF + F R + S ++F L
Sbjct: 244 IMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLF--------------------LAAG 283
Query: 307 AFFFLASFQ------FGLINSNFS-------SISMEPFSHLAGTASSIFG 343
L+ LI + FS S ++ PFS AG ASS G
Sbjct: 284 ITLALSPSHAVSLFGITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLG 333
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 84.9 bits (211), Expect = 3e-17
Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 2/166 (1%)
Query: 3 FVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLS 62
F++ +A L + L D+ LP I L S L S +L G+ + Q+ +GPLS
Sbjct: 7 FLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASL-SLFLAGFALGQLLWGPLS 65
Query: 63 DRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDG 122
DR+GRK V++ GL + + + M+ + S +L +R +Q +G + +I +++ D Y
Sbjct: 66 DRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA 125
Query: 123 RDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVIT 168
+ +V + M + + P LAP +G A + GW IF + IT
Sbjct: 126 QKANRVFATIMPLVALSPALAPLLG-AWLLNHFGWQAIFATLFAIT 170
>gnl|CDD|148990 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 345
Score = 84.0 bits (208), Expect = 6e-17
Identities = 73/348 (20%), Positives = 147/348 (42%), Gaps = 7/348 (2%)
Query: 7 IAMLMAINSLGIDIILPCLPK-ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRF 65
+ + + LG ++ P LP +++ L +S G L++ + +GY +AQ G LSDRF
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIG-LLLTAFSLGYALAQPLAGRLSDRF 59
Query: 66 GRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDM 125
GR+ V++ GL++ + +++ +S +L +R++QG+GG A ++I D + +
Sbjct: 60 GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119
Query: 126 AKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETLDP 185
+ L + F + L P +G +A GW F+ + ++ + + P
Sbjct: 120 GRALGLLSAGFGLGAALGPLLG-GLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPE 178
Query: 186 RDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNL-F 244
A R L+ + L G + + +Y + L L
Sbjct: 179 SKRPKPAEEAPAPLVPWKLLLRDPVLWLLLALLLFGFAFFALFTYLPLYQEVLGLSALLA 238
Query: 245 PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLI 304
+ + G +I + RL ++ G RR +LL+ + L+ +T + L+
Sbjct: 239 GLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVA 298
Query: 305 FIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTI 352
+ F A F +N+ S ++ + GTAS ++ ++ +
Sbjct: 299 LLLLGFGAGLVFPALNALASDLAPK---EERGTASGLYNTAGSLGGAL 343
>gnl|CDD|162085 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 76.9 bits (190), Expect = 9e-15
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 45 SFYLIGYGIAQIFYGPLS----DRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLI 100
L GY + Q+ Y PLS DRFGRK V++ GL I ++ST + ++ T ++ R +
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 101 QGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGI 160
QG G A + ++I DIY + L + + P+L P +G +A GW
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLG-GVLAQFLGWRAP 119
Query: 161 FVCMGVITTFITLWYYIRFPET 182
F+ + ++ + PET
Sbjct: 120 FLFLAILALAAFILLAFLLPET 141
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 71.1 bits (175), Expect = 5e-13
Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 7/194 (3%)
Query: 16 LGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGL 75
+ D+I P + + + + E + ++ YL G Q GPLSDR GR+ VM+ G+
Sbjct: 27 IANDMIQPGMLAVVEDFNAGAE-WVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV 85
Query: 76 VIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMI 135
I++ ++ S +R +QGIG + + I++ ++ D K+ ++ +
Sbjct: 86 AFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANV 145
Query: 136 FMIMPILAPSIGQATVALSGGWIGIFVCMGVIT--TFITLWYYIRFPETLDPRDVRPLNL 193
++ P+L P +G A + + W G+FV + +F LW + PET L+L
Sbjct: 146 ALLAPLLGPLVGAALIHV-LPWRGMFVLFAALAALSFFGLWRAM--PETAGRVG-EKLSL 201
Query: 194 YAILHSFSLIFKHR 207
+ + L+ K+R
Sbjct: 202 KELGRDYKLVLKNR 215
>gnl|CDD|185301 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 58.3 bits (141), Expect = 4e-09
Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 9/228 (3%)
Query: 44 ISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGI 103
+S YL G Q GPLSDR GR+ V++ G +I ++ + S T L R IQG
Sbjct: 57 VSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGT 116
Query: 104 GGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVC 163
+ +++ + K+++I I ++ PI+ P G A + W +F
Sbjct: 117 SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV-HWKVLFAI 175
Query: 164 MGVITTFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAI 223
+ V+ + + PET+ R P + ++L F +F++R SL+ +
Sbjct: 176 IAVMGLIAFVGLLLAMPETVK-RGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPM 234
Query: 224 LGFVNSSQQIYVGIYQLGNLFPIAFA---VGGF-AMSIASFINSRLVE 267
+ +V S I + G + FA V F A+ +A+ I +R V+
Sbjct: 235 MSWVAVSPVILI---DAGGMTTSQFAWTQVPVFGAVIVANAIVARFVK 279
>gnl|CDD|162090 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
Length = 366
Score = 54.7 bits (132), Expect = 4e-08
Identities = 71/338 (21%), Positives = 127/338 (37%), Gaps = 28/338 (8%)
Query: 28 ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVT 87
I D L LS G L++ ++ + +I G L D+FG + L++ I
Sbjct: 28 IKDDLGLSTAQLGN-LVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL 86
Query: 88 IN-SFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIA--------MMIFMI 138
S++ +L +RL GI G + + I + + L +A + +
Sbjct: 87 AVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFV 145
Query: 139 MPILAPSIGQAT---VALSGGWIGIFVCMGVI--TTFITLWYYIRFP------ETLDPRD 187
MP + S+ L+ GW + V G++ + + P L +
Sbjct: 146 MPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKG 205
Query: 188 VRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIA 247
R L +F+ R + + + S+T G+ LG + + + L + A
Sbjct: 206 ARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGA 265
Query: 248 FA-VGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFI 306
+A +GG S+A + + ++ G R L+ F + LV + P+ L +FI
Sbjct: 266 YASLGGLLGSLARPLGGAISDRLGGARK---LLMSFLGVAMGAFLVVLGLVSPLSLAVFI 322
Query: 307 AFFFLASFQFGLIN-SNFSSISMEPFSHLAGTASSIFG 343
F F G N S F+ + F G S + G
Sbjct: 323 VLFVALFFFSGAGNGSTFALVPHI-FRRATGAVSGLVG 359
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli.
Length = 485
Score = 48.1 bits (115), Expect = 4e-06
Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 11/178 (6%)
Query: 1 MEFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP 60
+ V+++ MA+ L I+ +P I+ L S Q +I+ Y++ I+ G
Sbjct: 3 LTIVLMLGTFMAV--LDSTIVNVAIPTIAGDLGSSLSQ-VQWVITSYMLANAISIPLTGW 59
Query: 61 LSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIY 120
L+ RFG + + + + + + + M+ R+IQG GG ++ S + +IY
Sbjct: 60 LAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY 119
Query: 121 DGRDMAKVLSIAMMIFMIMPILAPSI-GQATVALSGGW-------IGIFVCMGVITTF 170
+ ++I + ++ P L P++ G W IGI V +
Sbjct: 120 PPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFIL 177
>gnl|CDD|162095 TIGR00895, 2A0115, benzoate transport.
Length = 398
Score = 46.6 bits (111), Expect = 1e-05
Identities = 38/181 (20%), Positives = 78/181 (43%), Gaps = 2/181 (1%)
Query: 4 VIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSD 63
+I+ ++M ++ + + P IS L G L S LIG +F+GPL+D
Sbjct: 19 IILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLG-FLFSAGLIGMAFGALFFGPLAD 77
Query: 64 RFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGR 123
R GRK V+++ +++ + T + + T +L +R + G+G +++ + R
Sbjct: 78 RIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR 137
Query: 124 DMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETL 183
+ + + I + + + + GW +F G+ + L PE++
Sbjct: 138 FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GWRSLFYVGGIAPLLLLLLLMRFLPESI 196
Query: 184 D 184
D
Sbjct: 197 D 197
Score = 32.3 bits (74), Expect = 0.23
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 53 IAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGI 103
I I +G L+DR G ++ + L+ + + + T+ S T +L + I G
Sbjct: 300 IGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGF 350
>gnl|CDD|162086 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
Length = 379
Score = 44.3 bits (105), Expect = 6e-05
Identities = 62/360 (17%), Positives = 120/360 (33%), Gaps = 36/360 (10%)
Query: 25 LPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFI 84
+P + + + LS + G L SF I YGI++ G +SDR ++ + GL++ I
Sbjct: 18 MPYLVEEIGLSKTDLGLLLSSFS-IAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF 76
Query: 85 MVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAP 144
S M + + GI + + + +S + L P
Sbjct: 77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136
Query: 145 SIGQATVALSGGWIGIFV---CMGVITTFITLWYY--------------IRFPETLDPRD 187
+ +A W +F+ + +I + I + E +
Sbjct: 137 PLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAE 196
Query: 188 VRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYV----GIYQL-GN 242
+ L + ++ ++ G ++ S +Y+ G + +
Sbjct: 197 KKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWS-PLYLTQEKGFSKEKAS 255
Query: 243 LFPIAFAVGGFAMSIASFINSRLVEKFGIRRVS---HYSLLIFFMITGSWLLVQITSNHP 299
+ +GG ++ + S + F RR + LI + WL +N
Sbjct: 256 WAFTLYELGGLVGTLLAGWLSDKL--FNGRRGPLAVFFMALIIVSLLVYWLNP--AANPL 311
Query: 300 IHLLIFIAFFFLASFQFGLINSNFSSISME-PFSHLAGTASSIFGFINTVISTILGIIIG 358
+ L I F L +G I+ E AGTA+ GF + + G+ +G
Sbjct: 312 MDL---ICLFALGFLVYGPQML-IGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLG 367
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
pfam model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 43.4 bits (102), Expect = 1e-04
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 5/148 (3%)
Query: 6 VIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRF 65
V+ + + + + + ++ LP L + + G L +G + F+G L+D+
Sbjct: 171 VLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGM-LGLIVYLGMMVGAFFWGGLADKL 229
Query: 66 GRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQ--GIGGAAPRIITISIIRDIYDGR 123
GRK ++ L ++ F + + L RL+ GIGGA P I S +
Sbjct: 230 GRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIP--IVFSYFAEFLAQE 287
Query: 124 DMAKVLSIAMMIFMIMPILAPSIGQATV 151
+ LS M +MI I A ++ A +
Sbjct: 288 KRGEHLSWLCMFWMIGGIYAAAMAWAII 315
>gnl|CDD|162097 TIGR00898, 2A0119, cation transport protein.
Length = 505
Score = 42.7 bits (101), Expect = 2e-04
Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
Query: 44 ISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGI 103
S + +G + +G LSDRFGRK V++ ++ +S + ++T L RL+ G+
Sbjct: 133 QSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGM 192
Query: 104 GGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVC 163
G + + + + + A V ++ + F + +L P + W + +
Sbjct: 193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLA 248
Query: 164 MGVITTFITLWYYIRFPE 181
+ + TF+ PE
Sbjct: 249 VSL-PTFLFFLLSWFVPE 265
>gnl|CDD|177665 PLN00028, PLN00028, nitrate transmembrane transporter; Provisional.
Length = 476
Score = 41.5 bits (98), Expect = 4e-04
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 23 PCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIIST 82
P LP I D+L+L+ + G I + G +++ GP+ D +G + F L++ +
Sbjct: 57 PLLPIIRDNLNLTKSDIGNAGI-ASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAV 115
Query: 83 FIMVTINSFTGMLCMRLIQGIGGAA 107
F M ++S TG + +R G A
Sbjct: 116 FCMSLVSSATGFIAVRFFIGFSLAT 140
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 41.2 bits (96), Expect = 5e-04
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 45 SFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIG 104
+ + +G ++ + G L+DRFGR+ ++ +I ++ + T N F +L + G+
Sbjct: 85 TLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLAAMTLLGV- 143
Query: 105 GAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIF--- 161
A P + I ++ + L I + M P GQ +A+ G W IF
Sbjct: 144 AAGPAGASPLFIGELMSNKTKFLGLLIVSAPTIAMNGAGPYFGQ-RLAIQGNWRWIFYIY 202
Query: 162 -VCMGVITTFITLWYY 176
+ + I +WY+
Sbjct: 203 IIMSAIAVLLIIIWYH 218
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein.
Length = 365
Score = 38.1 bits (89), Expect = 0.004
Identities = 47/288 (16%), Positives = 96/288 (33%), Gaps = 25/288 (8%)
Query: 47 YLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTG-----MLCMRLIQ 101
++ Y + G L+DR+ RK VM+ +I + ++ + G + + I
Sbjct: 43 GMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGIL 102
Query: 102 GIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIF 161
I A +++ D+ + + S++ + + I+ P IG A G I+
Sbjct: 103 AIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW 162
Query: 162 VCMGVITTFITLWYYIRFPE-TLDPRDVRPLNLYA-ILHSFSLIFKHR-------ASTLY 212
V L +R PE + + K+ + L+
Sbjct: 163 VDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLF 222
Query: 213 NIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIAFAVGGFAMSIASFINSRLVEKFGIR 272
N+ + + A+ +V Q Y+G + A G + + + + G
Sbjct: 223 NLVFAPAIVALFPYV---QSKYLGRGST--HYGWVLAAFGLGALLGALL----LGLLGRY 273
Query: 273 RVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLIN 320
+ + G +LV + L + + F +G IN
Sbjct: 274 FKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFA--IGVGYGPIN 319
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 35.8 bits (83), Expect = 0.020
Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 3/160 (1%)
Query: 25 LPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFI 84
L ++ L+ LIS I + G + DR+GR++ M+ +V+ + T
Sbjct: 43 LTEVQGEFGLTTVQ-AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLA 101
Query: 85 MVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAP 144
+ + RL+ G+G A + + + + + K + F I ++A
Sbjct: 102 CGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAA 161
Query: 145 SIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETLD 184
+ + V GW +F +G++ LW PE D
Sbjct: 162 QV-YSLVVPVWGWRALFF-IGILPIIFALWLRKNLPEAED 199
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 35.8 bits (83), Expect = 0.020
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 28 ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRK---IVMMFGLVIHIISTFI 84
+S +LH S E++G +I +IG Q G LSDRFGR+ I+ L + I FI
Sbjct: 277 LSHNLHYS-EDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFI 335
Query: 85 MVTINS----FTGMLCMRLI 100
++ N F G+L + +I
Sbjct: 336 LINSNVIGLIFAGLLMLAVI 355
Score = 30.4 bits (69), Expect = 0.83
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 56 IFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSF 91
+F+G L D++GR+ ++ +VI ISTF + I S+
Sbjct: 75 LFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSY 110
>gnl|CDD|162092 TIGR00891, 2A0112, putative sialic acid transporter.
Length = 405
Score = 34.9 bits (80), Expect = 0.043
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 43 LISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQG 102
LIS LI + +G DR+GR++ M+ +V+ T + M RL+ G
Sbjct: 52 LISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIG 111
Query: 103 IG 104
IG
Sbjct: 112 IG 113
Score = 28.7 bits (64), Expect = 2.7
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 3 FVIVIAMLMAIN--SLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP 60
FV ++ +++ N S I +LP K L + + +++ F IG + +G
Sbjct: 240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGL---SPHTVANIVVFSNIGAIVGGCVFGF 296
Query: 61 LSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCM------RLIQGIGGAAPRIIT 112
L D GR+ + L+ + + I + +L + L+QGI G P+ +
Sbjct: 297 LGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLG 354
>gnl|CDD|162040 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
GPH:cation symporters catalyze uptake of sugars in
symport with a monovalent cation (H+ or Na+). Members of
this family includes transporters for melibiose,
lactose, raffinose, glucuronides, pentosides and
isoprimeverose. Mutants of two groups of these
symporters (the melibiose permeases of enteric bacteria,
and the lactose permease of Streptococcus thermophilus)
have been isolated in which altered cation specificity
is observed or in which sugar transport is uncoupled
from cation symport (i.e., uniport is catalyzed). The
various members of the family can use Na+, H+ or Li, Na+
or Li+, H+ or Li+, or only H+ as the symported cation.
All of these proteins possess twelve putative
transmembrane a-helical spanners.
Length = 437
Score = 33.8 bits (78), Expect = 0.078
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 9/166 (5%)
Query: 156 GWIGIFVCMGVITTFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIA 215
+ + +GV++ I + E ++ F +FK+ + +A
Sbjct: 174 MFALVLALIGVVSLIIC---FFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLA 230
Query: 216 NSLTMGAILGFVNSSQQIYVGIYQLG--NLFPIAFAVGGFAMSIASFINSRLVEKFGIRR 273
A + + Q+Y Y LG LF ++ A I + RLV+KFG +
Sbjct: 231 YLFYNLAF--NIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI 288
Query: 274 VSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLI 319
+ +L+ M+ G + SN P+ L++ I F +F GL+
Sbjct: 289 LFAGGILL--MVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLV 332
>gnl|CDD|183191 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 33.0 bits (76), Expect = 0.12
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 56 IFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGI--GGAAPRIITI 113
+ G L+DR GRK +++ + + + + F +L RL+ G+ GGA P +I +
Sbjct: 68 LLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIAL 127
Query: 114 S 114
+
Sbjct: 128 T 128
>gnl|CDD|179633 PRK03699, PRK03699, putative transporter; Provisional.
Length = 394
Score = 33.0 bits (76), Expect = 0.14
Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 11/145 (7%)
Query: 28 ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVT 87
I++ +L + +F G I+ L + K ++FG + I++ ++
Sbjct: 33 IAEYFNLPVSSMSN-TFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF 91
Query: 88 INS-FTGMLCMRLIQGIGGAAPRIITISI----IRDIYDGRDMAKVLSIAMMIFMIMPIL 142
+S + M ++ + G IT+SI I +Y+G+ L F + ++
Sbjct: 92 SHSLALFSIAMFVLGVVSG-----ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI 146
Query: 143 APSIGQATVALSGGWIGIFVCMGVI 167
P I +A S W ++ C+G++
Sbjct: 147 FPIIAAYLLARSIEWYWVYACIGLV 171
>gnl|CDD|183424 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 33.0 bits (75), Expect = 0.15
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 2/135 (1%)
Query: 48 LIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAA 107
IG +G L+D+FGRK +MM+ +V + + T + + + R I G+G A
Sbjct: 63 FIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAG 122
Query: 108 PRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVI 167
+ + + +K + + F I I+A + A + GW F +G++
Sbjct: 123 EYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYF-MPSFAEAYGWRAAFF-VGLL 180
Query: 168 TTFITLWYYIRFPET 182
+ ++ R PE+
Sbjct: 181 PVLLVIYIRARAPES 195
>gnl|CDD|162087 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc.
Length = 394
Score = 32.6 bits (75), Expect = 0.16
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 17/135 (12%)
Query: 48 LIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTF----IMVTINSFTGMLCMRLIQGI 103
LI + I G LSDR GR+ V++ V+ + ++ SFT + L +
Sbjct: 265 LILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLAL 324
Query: 104 GGAAPRIITISIIRDI------YDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGW 157
G S + ++ Y G +A L+ A I AP I A VA++G W
Sbjct: 325 IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGA-----IFGGFAPYIAAALVAMTGDW 379
Query: 158 --IGIFVCMGVITTF 170
IG ++ +
Sbjct: 380 YAIGYYLAALALIGL 394
Score = 29.5 bits (67), Expect = 1.5
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 56 IFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTG--------MLCMRLIQGIG 104
I +G DR GRK ++ L++ I T ++ + S+ +L RLIQG
Sbjct: 53 IVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109
>gnl|CDD|182234 PRK10091, PRK10091, MFS transport protein AraJ; Provisional.
Length = 382
Score = 32.8 bits (75), Expect = 0.18
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 20 IILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHI 79
I+ L +++ + +S G H+IS+Y +G + S R+ K +++F + + +
Sbjct: 21 GIMGVLTELAHDVGISIPAAG-HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCV 79
Query: 80 ISTFIMVTINSFTGMLCMRLIQG 102
I + +S+ + RL+ G
Sbjct: 80 IGNAMFTLSSSYLMLAIGRLVSG 102
>gnl|CDD|147889 pfam05977, DUF894, Bacterial protein of unknown function (DUF894).
This family consists of several bacterial proteins, many
of which are annotated as putative transmembrane
transport proteins.
Length = 524
Score = 32.3 bits (74), Expect = 0.20
Identities = 50/235 (21%), Positives = 87/235 (37%), Gaps = 29/235 (12%)
Query: 56 IFYGPLSDRFGRKIVMMFG-LVIHIISTFIMVTINSFTGM------LCMRLIQGIGGAAP 108
I G ++D F R+ VM+ G L++ I S + V + G+ L + GIG A
Sbjct: 63 IPAGAIADNFDRRKVMLAGQLLMAIASALLTVL--AALGLLSPWLLLAFTFLIGIGTALN 120
Query: 109 RIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVIT 168
+ + D+ RD+ +++ + + + + P++G VA G V ++
Sbjct: 121 DPAWQASVGDLVPRRDVPAAVALNSVGYNLARSVGPALGGLLVAAFGAATAFAV--NALS 178
Query: 169 TFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVN 228
F + R+ + P + NL+ L + L + S I + L A G
Sbjct: 179 YFAVIVAIARWKRDVPPSPLPRENLFGALRA-GLRYT-AMSR--EIRSVLVRAAAFGLSA 234
Query: 229 SS----------QQIYVGIYQLGNLFPIAFAVGGFAMSIASFINSRLVEKFGIRR 273
S+ + G L AF G + I SRL + R
Sbjct: 235 SAVWALLPLVARDLLGGDAGFYGILLG-AFGAGAVL---GALILSRLRRRLSSER 285
>gnl|CDD|163048 TIGR02865, spore_II_E, stage II sporulation protein E. Stage II
sporulation protein E (SpoIIE) is a multiple membrane
spanning protein with two separable functions. It plays
a role in the switch to polar cell division during
sporulation. By means of it protein phosphatase
activity, located in the C-terminal region, it activates
sigma-F. All proteins that score above the trusted
cutoff to this model are found in endospore-forming
Gram-positive bacteria. Surprisingly, a sequence from
the Cyanobacterium-like (and presumably
non-spore-forming) photosynthesizer Heliobacillus
mobilis is homologous, and scores between the trusted
and noise cutoffs.
Length = 764
Score = 31.2 bits (71), Expect = 0.47
Identities = 14/74 (18%), Positives = 28/74 (37%)
Query: 196 ILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIAFAVGGFAM 255
I L+ + + A + +G ILG N++ +G++ L F G
Sbjct: 181 IARLAVLLISYIGGSGAGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIG 240
Query: 256 SIASFINSRLVEKF 269
+ ++ L+ F
Sbjct: 241 TGIGYLVGFLILAF 254
Score = 31.2 bits (71), Expect = 0.53
Identities = 29/148 (19%), Positives = 45/148 (30%), Gaps = 25/148 (16%)
Query: 246 IAFAVGGFAMSIASFINSRLVEKFGI------RRVSHYSLLIFFMITGSWL-LVQITSNH 298
I F V F + A ++ + FGI FF G L + I H
Sbjct: 1 IIFFVIAFLLGRAVIVSP--MAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISIQPKH 58
Query: 299 PIHLLIFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIG 358
+ L+ +A L S+ N ++ P I F+ + I G
Sbjct: 59 SLKYLLLVAVIILLSYVLK--NLTDKKKTVVPP---------IVVFLEAAVYAIFGY--- 104
Query: 359 QSFNGTTYPITIGFFGIAVSSFICILIV 386
N P+ I +S +L
Sbjct: 105 -LQNKLVTPLDF-ILSIVEASLSFVLYY 130
>gnl|CDD|162084 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083).
Length = 481
Score = 31.2 bits (71), Expect = 0.52
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 44 ISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM--VTINSFTGMLCM-RLI 100
+S +L+G I +F G LSDRFGRK ++ ++ +I +M ML + R++
Sbjct: 77 VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVL 136
Query: 101 QGIG 104
GIG
Sbjct: 137 LGIG 140
>gnl|CDD|151127 pfam10599, Nup_retrotrp_bd, Retro-transposon transporting motif.
This is the highly conserved C-terminal motif
GRKIxxxxxRRKx of nucleoporins that plays a critical and
unique role in the nuclear import of retro-transposons
in both yeasts and higher organisms. It would appear
that the arginine residues at positions 2 and 9-10
constitute a bipartite nuclear localisation signal, with
two basic peptide motifs separated by an interchangeable
spacer sequence, that is crucial for the
retro-transposon activity.
Length = 101
Score = 30.9 bits (69), Expect = 0.56
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 312 ASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNGTTY 366
+ F G N+NF+ H + T S+ F F ST N +
Sbjct: 9 SVFGMGNSNTNFNFAGSNNQPHTSNTPSTPFTF-GASPSTPANAASPSGSNPPAF 62
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083).
Length = 502
Score = 30.9 bits (70), Expect = 0.68
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 49 IGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVT------INSFTGMLCMRLIQG 102
IG Q+F+G L+D+ GRK V L+I II+T + + R G
Sbjct: 67 IGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLG 126
Query: 103 IGG 105
+G
Sbjct: 127 VGI 129
>gnl|CDD|181510 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 29.5 bits (67), Expect = 1.7
Identities = 42/192 (21%), Positives = 82/192 (42%), Gaps = 27/192 (14%)
Query: 4 VIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSD 63
+I ++ I+ L + L L N Q+L++ IG GI + G LS
Sbjct: 238 IIGLSYFWFISQL---AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLS- 293
Query: 64 RFGRKIVMMFGLV----IHI-ISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRD 118
GR I GLV + + +S F++ T S +L + + G + ++I+
Sbjct: 294 --GRHI--ELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQF 349
Query: 119 IYDGRDMAKVLS-------IAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFI 171
+++ KVL+ + M++F+ + L +G + G+F + ++T
Sbjct: 350 RAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPA-------GLFYLIALVTLIG 402
Query: 172 TLWYYIRFPETL 183
TL+ + P++L
Sbjct: 403 TLYTLLLLPDSL 414
>gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional.
Length = 471
Score = 29.3 bits (66), Expect = 2.0
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 59 GPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGA----APRIITIS 114
G L+DR G + + +V+ + + + +L R++QG+GGA R+ +
Sbjct: 66 GWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMK 125
Query: 115 II-RDIYDGRDMAKVLSIAMMIFM-----IMPILAPSIGQATVALSGGWIGIFVC---MG 165
I+ R+ Y +A M F+ + P+L P++G V + W IF+ +G
Sbjct: 126 IVPREQY----------MAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHWIFLINIPVG 174
Query: 166 VITTFITLW 174
+I TL
Sbjct: 175 IIGAIATLM 183
>gnl|CDD|182718 PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase; Reviewed.
Length = 453
Score = 29.2 bits (66), Expect = 2.1
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 212 YNIANSLTMGAILGFVNSS-QQIYVGIYQL----GNLFPIAFAVG 251
+NIAN+L A+ V ++ + G+ L G LFPI A G
Sbjct: 282 HNIANALAAAALAMSVGATLDAVKAGLANLKAVPGRLFPIQLAEG 326
>gnl|CDD|162094 TIGR00893, 2A0114, d-galactonate transporter.
Length = 399
Score = 28.8 bits (65), Expect = 2.8
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Query: 26 PKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM 85
P + + L LS YG ++ S + GY + Q G L DRFG + + +VI + T +
Sbjct: 18 PMLQEDLGLSAAQYG-YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ 76
Query: 86 VTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAM-MIFMIMPILAP 144
++ + +R++ G A I I+ + + A +SI + I P
Sbjct: 77 AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGP 136
Query: 145 SIGQATVALSGGWIGIFVCMGVITTFI 171
+G + S W F+ GV+
Sbjct: 137 LVGWILIHFS--WQWAFIIEGVLGIIW 161
>gnl|CDD|162091 TIGR00890, 2A0111, Oxalate/Formate Antiporter.
Length = 377
Score = 27.8 bits (62), Expect = 4.5
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 47 YLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGA 106
LIG ++ G L+D+FG + V M G +++ + +S + L G+ A
Sbjct: 47 LLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALY---LTYGLASA 103
Query: 107 APRIITISII 116
I +
Sbjct: 104 GVGIAYGIAL 113
Score = 27.4 bits (61), Expect = 6.6
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 13/131 (9%)
Query: 39 YGQHLI----------SFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTI 88
YGQ L S I G + F G LSD+ GR+ M I + M+ I
Sbjct: 231 YGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI 290
Query: 89 NSFTGMLCMRLIQGIGGAAPRIITI--SIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSI 146
+L + + + I++ S++ DI+ + A + I +
Sbjct: 291 PMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFG-GL 349
Query: 147 GQATVALSGGW 157
+ G+
Sbjct: 350 IASHALTEIGF 360
>gnl|CDD|180708 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 26.9 bits (60), Expect = 9.1
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 334 LAGTASSIFGFINTVISTILGIIIGQSFNGT----TYPITIGFFGIAVSSFIC 382
LA S F + V+ + L ++ ++ G T + + G+AV SF+
Sbjct: 229 LAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLA 281
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.333 0.146 0.437
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,596,795
Number of extensions: 452344
Number of successful extensions: 1696
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1616
Number of HSP's successfully gapped: 212
Length of query: 398
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 303
Effective length of database: 3,941,713
Effective search space: 1194339039
Effective search space used: 1194339039
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.1 bits)