HHsearch alignment for GI: 254780968 and conserved domain: TIGR03143

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.12  E-value=0.019  Score=35.65  Aligned_cols=76  Identities=16%  Similarity=0.175  Sum_probs=48.8

Q ss_pred             CCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf             98689999999964489799944899989983179999999974-----9965899711440379999997347877638
Q gi|254780968|r    1 MNSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSL-----GVSYKGIDVLADDALRQSIKEYSNWPTIPQL   75 (106)
Q Consensus         1 m~~~~~~~i~~~i~~~~Vvifskgt~~~p~C~~c~~ak~lL~~~-----~i~y~~~dv~~d~~~~~~l~~~sg~~TvPqI   75 (106)
T Consensus       463 ~~~~~~~~i~~~~~~~~~~~~vs-----lsC~~CPdvV~a~~~~a~~np~i~~~~id~----~~f~~~~~~~~im~VP~~  533 (555)
T TIGR03143       463 LGEELLEKIKKITKPVNIKIGVS-----LSCTLCPDVVLAAQRIASLNPNVEAEMIDV----SHFPDLKDEYGIMSVPAI  533 (555)
T ss_pred             CCHHHHHHHHHCCCCEEEEEEEE-----CCCCCCHHHHHHHHHHHHHCCCCEEEEEEH----HHCHHHHHHCCCCCCCEE
T ss_conf             89899999984589726999997-----678898699999999997399951999863----638888986396537769


Q ss_pred             EECCEEECCH
Q ss_conf             9899894276
Q gi|254780968|r   76 YVKGDFIGGC   85 (106)
Q Consensus        76 Fv~G~~IGG~   85 (106)
T Consensus       534 ~~n~~~~~~g  543 (555)
T TIGR03143       534 VVDDQQVYFG  543 (555)
T ss_pred             EECCEECCCC
T ss_conf             9999351036