HHsearch alignment for GI: 254780968 and conserved domain: TIGR03143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.12 E-value=0.019 Score=35.65 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 98689999999964489799944899989983179999999974-----9965899711440379999997347877638
Q gi|254780968|r 1 MNSSVNSIIQNEIKKNDVVLFMKGTPTSPRCGFSGKVVQVLDSL-----GVSYKGIDVLADDALRQSIKEYSNWPTIPQL 75 (106)
Q Consensus 1 m~~~~~~~i~~~i~~~~Vvifskgt~~~p~C~~c~~ak~lL~~~-----~i~y~~~dv~~d~~~~~~l~~~sg~~TvPqI 75 (106)
T Consensus 463 ~~~~~~~~i~~~~~~~~~~~~vs-----lsC~~CPdvV~a~~~~a~~np~i~~~~id~----~~f~~~~~~~~im~VP~~ 533 (555)
T TIGR03143 463 LGEELLEKIKKITKPVNIKIGVS-----LSCTLCPDVVLAAQRIASLNPNVEAEMIDV----SHFPDLKDEYGIMSVPAI 533 (555)
T ss_pred CCHHHHHHHHHCCCCEEEEEEEE-----CCCCCCHHHHHHHHHHHHHCCCCEEEEEEH----HHCHHHHHHCCCCCCCEE
T ss_conf 89899999984589726999997-----678898699999999997399951999863----638888986396537769
Q ss_pred EECCEEECCH
Q ss_conf 9899894276
Q gi|254780968|r 76 YVKGDFIGGC 85 (106)
Q Consensus 76 Fv~G~~IGG~ 85 (106)
T Consensus 534 ~~n~~~~~~g 543 (555)
T TIGR03143 534 VVDDQQVYFG 543 (555)
T ss_pred EECCEECCCC
T ss_conf 9999351036