HHsearch alignment for GI: 254780968 and conserved domain: cd02950
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.40 E-value=0.016 Score=36.17 Aligned_cols=69 Identities=12% Similarity=0.183 Sum_probs=45.4
Q ss_pred HHHHC-CEEEEECCCCCCCCCCHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCE-EEE--CCEE
Q ss_conf 96448-9799944899989983179999999974------996589971144037999999734787763-898--9989
Q gi|254780968|r 12 EIKKN-DVVLFMKGTPTSPRCGFSGKVVQVLDSL------GVSYKGIDVLADDALRQSIKEYSNWPTIPQ-LYV--KGDF 81 (106)
Q Consensus 12 ~i~~~-~Vvifskgt~~~p~C~~c~~ak~lL~~~------~i~y~~~dv~~d~~~~~~l~~~sg~~TvPq-IFv--~G~~ 81 (106)
T Consensus 16 al~ngKPvlVdF----yA~WC~~Ck~maP~le~l~~~Y~dkv~fv~vNVDn~~w-~~~-~~~y~V~giPt~~~fd~~G~~ 89 (142)
T cd02950 16 ALSNGKPTLVEF----YADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW-LPE-IDRYRVDGIPHFVFLDREGNE 89 (142)
T ss_pred HHHCCCCEEEEE----ECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-HHH-HHHHCCCCCCEEEEECCCCCE
T ss_conf 971799789999----89989778877389999999958921499997888705-679-998197888769998689969
Q ss_pred ECCHH
Q ss_conf 42769
Q gi|254780968|r 82 IGGCD 86 (106)
Q Consensus 82 IGG~d 86 (106)
T Consensus 90 ~~~~i 94 (142)
T cd02950 90 EGQSI 94 (142)
T ss_pred EEEEC
T ss_conf 10353