HHsearch alignment for GI: 254780968 and conserved domain: cd02951

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=94.83  E-value=0.18  Score=30.11  Aligned_cols=73  Identities=12%  Similarity=0.290  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHC--CEEEEECCCCCCCCCCHHHHHHHHH-HH------CCCCEE--EEECCCCHHH---------HHHHHH
Q ss_conf             99999996448--9799944899989983179999999-97------499658--9971144037---------999999
Q gi|254780968|r    6 NSIIQNEIKKN--DVVLFMKGTPTSPRCGFSGKVVQVL-DS------LGVSYK--GIDVLADDAL---------RQSIKE   65 (106)
Q Consensus         6 ~~~i~~~i~~~--~Vvifskgt~~~p~C~~c~~ak~lL-~~------~~i~y~--~~dv~~d~~~---------~~~l~~   65 (106)
T Consensus         3 ~e~l~~A~~~~~Kpvlv~f~----~~~C~~C~~m~~~~~~~~~v~~~l~~~f~~v~vd~~~~~~~~~f~g~~~~~~~la~   78 (125)
T cd02951           3 YEDLAEAAADGKKPLLLLFS----QPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELAR   78 (125)
T ss_pred             HHHHHHHHHCCCCEEEEEEE----CCCCHHHHHHHHHHCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf             89999998638984999997----89897089999984399999999961814788761567530034556443999999


Q ss_pred             HHCCCCCCEEE-E--C-CEEE
Q ss_conf             73478776389-8--9-9894
Q gi|254780968|r   66 YSNWPTIPQLY-V--K-GDFI   82 (106)
Q Consensus        66 ~sg~~TvPqIF-v--~-G~~I   82 (106)
T Consensus        79 ~~~v~~tPT~~fld~~gg~~i   99 (125)
T cd02951          79 KYRVRFTPTVIFLDPEGGKEI   99 (125)
T ss_pred             HCCCCCCCEEEEECCCCCEEE
T ss_conf             869876777999869998677