HHsearch alignment for GI: 254780968 and conserved domain: cd02951
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=94.83 E-value=0.18 Score=30.11 Aligned_cols=73 Identities=12% Similarity=0.290 Sum_probs=39.1
Q ss_pred HHHHHHHHHHC--CEEEEECCCCCCCCCCHHHHHHHHH-HH------CCCCEE--EEECCCCHHH---------HHHHHH
Q ss_conf 99999996448--9799944899989983179999999-97------499658--9971144037---------999999
Q gi|254780968|r 6 NSIIQNEIKKN--DVVLFMKGTPTSPRCGFSGKVVQVL-DS------LGVSYK--GIDVLADDAL---------RQSIKE 65 (106)
Q Consensus 6 ~~~i~~~i~~~--~Vvifskgt~~~p~C~~c~~ak~lL-~~------~~i~y~--~~dv~~d~~~---------~~~l~~ 65 (106)
T Consensus 3 ~e~l~~A~~~~~Kpvlv~f~----~~~C~~C~~m~~~~~~~~~v~~~l~~~f~~v~vd~~~~~~~~~f~g~~~~~~~la~ 78 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFS----QPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELAR 78 (125)
T ss_pred HHHHHHHHHCCCCEEEEEEE----CCCCHHHHHHHHHHCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf 89999998638984999997----89897089999984399999999961814788761567530034556443999999
Q ss_pred HHCCCCCCEEE-E--C-CEEE
Q ss_conf 73478776389-8--9-9894
Q gi|254780968|r 66 YSNWPTIPQLY-V--K-GDFI 82 (106)
Q Consensus 66 ~sg~~TvPqIF-v--~-G~~I 82 (106)
T Consensus 79 ~~~v~~tPT~~fld~~gg~~i 99 (125)
T cd02951 79 KYRVRFTPTVIFLDPEGGKEI 99 (125)
T ss_pred HCCCCCCCEEEEECCCCCEEE
T ss_conf 869876777999869998677