HHsearch alignment for GI: 254780968 and conserved domain: cd02953
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=95.35 E-value=0.093 Score=31.72 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=38.3
Q ss_pred HHHHHHHHHCC-EEEEECCCCCCCCCCHHHHHHHHH-------HHC--CCCEEEEECCCCHHHHHHHHHHHCCCCCCEE-
Q ss_conf 99999964489-799944899989983179999999-------974--9965899711440379999997347877638-
Q gi|254780968|r 7 SIIQNEIKKND-VVLFMKGTPTSPRCGFSGKVVQVL-------DSL--GVSYKGIDVLADDALRQSIKEYSNWPTIPQL- 75 (106)
Q Consensus 7 ~~i~~~i~~~~-Vvifskgt~~~p~C~~c~~ak~lL-------~~~--~i~y~~~dv~~d~~~~~~l~~~sg~~TvPqI- 75 (106)
T Consensus 2 ~al~~a~~~gKpVlvdf----~A~WC~~Ck~m~~~~~~~~~v~~~~~~~~v~vkvD~t~~~~~~~~l~~~~~v~g~Pt~~ 77 (104)
T cd02953 2 AALAQALAQGKPVFVDF----TADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHHHCCCCEEEEE----ECCCCHHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 78999998299199999----86758888851142048899999972477357636778998999999983995567799
Q ss_pred EEC
Q ss_conf 989
Q gi|254780968|r 76 YVK 78 (106)
Q Consensus 76 Fv~ 78 (106)
T Consensus 78 f~~ 80 (104)
T cd02953 78 FYG 80 (104)
T ss_pred EEC
T ss_conf 987