HHsearch alignment for GI: 254780968 and conserved domain: cd02975
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=92.49 E-value=1 Score=25.66 Aligned_cols=69 Identities=19% Similarity=0.296 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHH-HHH--CC--EEEEECCCCCCCCCCHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 986899999999-644--89--799944899989983179999999974-----99658997114403799999973478
Q gi|254780968|r 1 MNSSVNSIIQNE-IKK--ND--VVLFMKGTPTSPRCGFSGKVVQVLDSL-----GVSYKGIDVLADDALRQSIKEYSNWP 70 (106)
Q Consensus 1 m~~~~~~~i~~~-i~~--~~--Vvifskgt~~~p~C~~c~~ak~lL~~~-----~i~y~~~dv~~d~~~~~~l~~~sg~~ 70 (106)
T Consensus 3 l~~~~r~~l~e~fl~~l~~pV~ivvF~~~----~~c~yc~~t~~ll~ela~lsdKi~~~~~~~~~d~e~a----~k~gVe 74 (113)
T cd02975 3 LSDEDRKALKEEFFKEMKNPVDLVVFSSK----EGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKA----EKYGVE 74 (113)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEECC----CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH----HHHCCE
T ss_conf 88889999999999857998699999579----8871169999999999974885389996676697999----983981
Q ss_pred CCCEEEE
Q ss_conf 7763898
Q gi|254780968|r 71 TIPQLYV 77 (106)
Q Consensus 71 TvPqIFv 77 (106)
T Consensus 75 r~Pti~i 81 (113)
T cd02975 75 RVPTTIF 81 (113)
T ss_pred ECCEEEE
T ss_conf 4657999