HHsearch alignment for GI: 254780968 and conserved domain: cd05295
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.99 E-value=0.66 Score=26.79 Aligned_cols=65 Identities=23% Similarity=0.460 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHCC--C-CEEEEECCCCHHH----HHHHHHHHCC--CCCCEEEE-------CCEEECCHHHHHHHHH
Q ss_conf 9831799999999749--9-6589971144037----9999997347--87763898-------9989427699999998
Q gi|254780968|r 30 RCGFSGKVVQVLDSLG--V-SYKGIDVLADDAL----RQSIKEYSNW--PTIPQLYV-------KGDFIGGCDIVCEMFE 93 (106)
Q Consensus 30 ~C~~c~~ak~lL~~~~--i-~y~~~dv~~d~~~----~~~l~~~sg~--~TvPqIFv-------~G~~IGG~d~l~~l~~ 93 (106)
T Consensus 3 dCP~yakaellAD~L~~nLpdF~vhKI~~~p~~W~~wl~~~c~~n~W~h~~SPiIWREL~drGGkg~liGg~neFlE~a~ 82 (452)
T cd05295 3 DCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYAE 82 (452)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHCCCCEEEECCCHHHHHHHH
T ss_conf 99427899999999971089846887057866899999999986697467897249999736797567358179999999
Q ss_pred C
Q ss_conf 8
Q gi|254780968|r 94 S 94 (106)
Q Consensus 94 ~ 94 (106)
T Consensus 83 ~ 83 (452)
T cd05295 83 S 83 (452)
T ss_pred H
T ss_conf 8